GeneSeqer. Version of March 12, 2006. Date run: Mon Aug 28 20:40:04 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 34829 Total sequence length: 35392868 Minimum sequence length: 63 Maximum sequence length: 5381 Length distribution (number of sequences of specified length): < 100: 4 < 200: 53 < 300: 143 < 400: 353 < 500: 791 < 600: 1674 < 700: 2583 < 800: 4023 < 900: 6481 < 1000: 5706 >=1000: 13018 Input file : /tmp/bac-submission-temp-lfB6K/C04HBa0127E11/C04HBa0127E11.seq.screen ________________________________________________________________________________ Sequence 1: C04HBa0127E11.1, from 1 to 95845, both strands analyzed. ... started at: Mon Aug 28 20:53:23 2006 EST library file: /tmp/cxgn-bacpublish-resources-rY9f4u/lycopersicum_combined_unigene_seqs; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 21 EST library file: /tmp/cxgn-bacpublish-resources-rY9f4u/lycopersicum_combined_unigene_seqs; matching gDNA -strand ... ... found all matches, elapsed seconds = 2 ... matches indexed, elapsed seconds = 2 HitsTableSize = 30 ******************************************************************************** EST sequence 44 +strand 1628 n (File: SGN-U319645+) 1 TTATATTATA ACTGGCCTGA GATGGAAAAC TTTGAGGATG TTGACAGGAT GTTCGGAAGT 61 TGTGATTCAA CATTTGGAGT TGGAGCTAGT ATCGAAGATG ACCTTGGTTG GTTTTCGTCA 121 TCTGGTGTTA TTGAAGGATC TGGAGGTGGA TTGAGGTCAG ATTTGGAGTT TGCCTTCTCA 181 ACATCCAGTG CACTTGAAAA TATCTCTGGA ATGCAGGAAG CTTCCAGGTC AAAGGAAACA 241 GGCAATTCAA TTAATGATTC TGGCACTAAA GATCAACTCT TCAGTCAGAC TGGCAGTTCA 301 ATGCCATCAG AGGATGAATC AGCCGTTCTG AGTCATCTAT CTTTTACAAA TGGTTCAAGT 361 GATTCAGATT TCAAGATAGT GCCCATAAAG AAGATTAATC TTCACAAAAT TAACTCTAAG 421 CTCCAGAATC AATCTGAGGG AAAAAGAAAA CATGTTTACG TGGAAAATGG GGAGACATTC 481 AACTATATTG ATAGCCTTCC AGAAGAGAGA AACCATCCTA CTGCAATCAC TGGATCTCAG 541 GCTCTCACAT CCACAGGTAT TCAGCAGCAC AAGCAAGTTG ATGGATCTGA TTTTGGGTAT 601 TTTCAGGATG GCTTTTCTTA CTTATCTTCA GATTACAGTC ATTCAGATCA GACTACGGTT 661 TGTCCAACCC TATCCACAAT TAAATCTAAA AAAAGCTGTC TCGTGACTCT TTCTGCTAAG 721 GACTCCTGTG CGACAAATCA GATGCAGTTG ATGGAAAGCT TACCTGATCC TTCTTTTCAG 781 GTGGCTGGTA TAGGAACAAA TGAAAATATG GTGGACAAGC TACTTCAACG TTCTGTAATT 841 AAGCATGAAA ACAACAGGGA TCTTGAAAGT GTCAGCACGG GAATTCCAGC AGAAGTAGGT 901 TCCTCTATTG TAAAGGAGAG CTCTTGCACA AGTTCTGGGT TGAATGAAAT TTCTGAGGAG 961 GCAGATAGTT TTCATCAGCT TGAACATGTC ATGGAACGGT TGGATGTAAG AACAAAGCTA 1021 CGGATAAGGG ATAGCTTGTA TCGGTTGGCT CAGAGTGCTG AACAAAGGCT TAGACATGCT 1081 AATCTCAATA ATGGATCTGG TGATGATAGT CACACAAGCA GAGCATTTGA TGATGATGGA 1141 GCATACAGAT GCACAGGATA TTTGGACACG GAGACAGACA CTAACTCTAT AGATCGATCT 1201 ATTGCTCACT TACTCTTCCA CAGGCCTTCA AACTCATCAG TGATGGCTGA TTCTTTGGCT 1261 TTGGAGTCAC CTTCCACGAT TTTCGAGACA TTACTCAGCC CACCAATGAT TGATGAGAAC 1321 TTGATTTCTG CTGGAGAAAA TGCAGCCGAA CCAGATAAAG GCACGAAATA TTAAACAGGC 1381 TTCTATACAA ATGGGTTGTG TTTATTTCAA TTTATGTCGC ATGGACTCGC CTACATGTAT 1441 GTGCATGTAA GTATCTGCTA TGGATACTTA TATACTCTTT TGTTGTTTAG TGTAATTCGA 1501 AGAATCTAAA CAGTATGAGA ATGAGGATCT ATGTCAAATA GCTTACAGTT ACTCGTGTGT 1561 TTGTGTATGA GAATTATCAA GAATCTCAAA TGAGAAATTA TTTCATGTAA AAAAAAAAAA 1621 AAAAAAAA Predicted gene structure (within gDNA segment 8712 to 2228): Exon 1 8112 8057 ( 56 n); cDNA 1 56 ( 56 n); score: 1.000 Intron 1 8056 7957 ( 100 n); Pd: 0.991 (s: 1.00), Pa: 0.894 (s: 1.00) Exon 2 7956 7620 ( 337 n); cDNA 57 393 ( 337 n); score: 1.000 Intron 2 7619 5559 (2061 n); Pd: 0.989 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 3 5558 4953 ( 606 n); cDNA 394 999 ( 606 n); score: 1.000 Intron 3 4952 3991 ( 962 n); Pd: 0.994 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 4 3990 3842 ( 149 n); cDNA 1000 1148 ( 149 n); score: 1.000 Intron 4 3841 3564 ( 278 n); Pd: 0.986 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 5 3563 3434 ( 130 n); cDNA 1149 1278 ( 130 n); score: 1.000 Intron 5 3433 3350 ( 84 n); Pd: 0.930 (s: 1.00), Pa: 0.814 (s: 1.00) Exon 6 3349 3019 ( 331 n); cDNA 1279 1609 ( 331 n); score: 1.000 PPA cDNA 1610 1628 MATCH C04HBa0127E11.1- SGN-U319645+ 1.000 1609 0.988 C PGS_C04HBa0127E11.1-_SGN-U319645+ (8112 8057,7956 7620,5558 4953,3990 3842,3563 3434,3349 3019) Alignment (genomic DNA sequence = upper lines): TTATATTATA ACTGGCCTGA GATGGAAAAC TTTGAGGATG TTGACAGGAT GTTCGGGTAA 8053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTATATTATA ACTGGCCTGA GATGGAAAAC TTTGAGGATG TTGACAGGAT GTTCGG.... 56 TTGTTGTCTC TAGTGTTTTT CATGTGATTT TCTTTTTTTA TTCAGAGGAG ACTGACTAAT 7993 .......... .......... .......... .......... .......... .......... 56 ACTTTATGAT TGCTCACTGT TTATAATATC TTCCAGAAGT TGTGATTCAA CATTTGGAGT 7933 |||| |||||||||| |||||||||| .......... .......... .......... ......AAGT TGTGATTCAA CATTTGGAGT 80 TGGAGCTAGT ATCGAAGATG ACCTTGGTTG GTTTTCGTCA TCTGGTGTTA TTGAAGGATC 7873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGCTAGT ATCGAAGATG ACCTTGGTTG GTTTTCGTCA TCTGGTGTTA TTGAAGGATC 140 TGGAGGTGGA TTGAGGTCAG ATTTGGAGTT TGCCTTCTCA ACATCCAGTG CACTTGAAAA 7813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGGTGGA TTGAGGTCAG ATTTGGAGTT TGCCTTCTCA ACATCCAGTG CACTTGAAAA 200 TATCTCTGGA ATGCAGGAAG CTTCCAGGTC AAAGGAAACA GGCAATTCAA TTAATGATTC 7753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCTCTGGA ATGCAGGAAG CTTCCAGGTC AAAGGAAACA GGCAATTCAA TTAATGATTC 260 TGGCACTAAA GATCAACTCT TCAGTCAGAC TGGCAGTTCA ATGCCATCAG AGGATGAATC 7693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCACTAAA GATCAACTCT TCAGTCAGAC TGGCAGTTCA ATGCCATCAG AGGATGAATC 320 AGCCGTTCTG AGTCATCTAT CTTTTACAAA TGGTTCAAGT GATTCAGATT TCAAGATAGT 7633 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCGTTCTG AGTCATCTAT CTTTTACAAA TGGTTCAAGT GATTCAGATT TCAAGATAGT 380 GCCCATAAAG AAGGTAAATT ATTAATTTAG TGTACATCGG GCTTTCTGTT TAGCCTTTTA 7573 |||||||||| ||| GCCCATAAAG AAG....... .......... .......... .......... .......... 393 TTCCACCTCA GCTTAACCTT TAAGGTGTTC TATTTGAAGA TTGTTGAATT CAATGGAGGG 7513 .......... .......... .......... .......... .......... .......... 393 ATCAGGTTGA GATTTTGTCT AACATGCACA CATGAACTAG TGATAGAGTG TTATTGGCGT 7453 .......... .......... .......... .......... .......... .......... 393 TCAGCATGTT CATCTAATTT AAAATCTTAA GCTGATAGAG AGAACACACT TTTATTTACT 7393 .......... .......... .......... .......... .......... .......... 393 TAATTATGTT TCCAACATGT CCTTTACATT TGGACTTGAT TCTTTTTCAT GGGCCAAGCA 7333 .......... .......... .......... .......... .......... .......... 393 TATGTAGATT CTTTTTTGTT AATGGGTAGC AATGAATTCC AAACCCAGTA CATGTGGCTG 7273 .......... .......... .......... .......... .......... .......... 393 CGGTAATACC GTGTTGACTC TGTCATCATC TCATCTAAAA ACTCATGTTA TATCTTTCAT 7213 .......... .......... .......... .......... .......... .......... 393 AAGCACTCTT TCTTTTCCAA AATCTTGTCT TAAGCAAGGA AATACATGCA TTGATGAGGT 7153 .......... .......... .......... .......... .......... .......... 393 GCACTGTCGC CGGCACCAAT GGTTTTGACT CTATTTTTAT GCGTGAAACT TCTCAAGAAA 7093 .......... .......... .......... .......... .......... .......... 393 CATATATGAA CAAAGTGGCT CCCCTCATGT AAAGGGACAA CTGGGTGCAC TGTTTCATCT 7033 .......... .......... .......... .......... .......... .......... 393 AAGATATTCT GGTAATGAAC ACAGTTGAAG CAATTTTTTT CATTTGTTCC TCACCTCAGT 6973 .......... .......... .......... .......... .......... .......... 393 CTGATCTCTG TTTCTTTAGT TTCTTTGTTG TTTCTGATTC TTCACTTGTT TTTACTCTTT 6913 .......... .......... .......... .......... .......... .......... 393 AAAAACAAAT CTTCACAGCA AAATTAGGAA AGGATGACTA GGTGAGCAAT TTGTAGCACT 6853 .......... .......... .......... .......... .......... .......... 393 TTTTTTTTTT TGAAATGTTC ACAATTTTAT ATATCAGTGC ATAAAAATTG AGCCAACAAC 6793 .......... .......... .......... .......... .......... .......... 393 CATAATTTGA GACATGACAA CCTGATCAAA TACTATCCTA TACACTTATA TATATTCTAA 6733 .......... .......... .......... .......... .......... .......... 393 ACACACTAAG ATAGATTCAG TAGCCAGTGT GAGTTCTTTT TTACACAAAC AAAAAAATAA 6673 .......... .......... .......... .......... .......... .......... 393 GAAAAGTGAA TTCATCTTGA TCTACTGAGT CGGACTATCC TTGCTTGAAA GAAATCTCTG 6613 .......... .......... .......... .......... .......... .......... 393 ATTCCTTTCC CTACAGACAG ACCACCATAT CTGAAATGGT ATCCTTTTTC ATCTCCTTTA 6553 .......... .......... .......... .......... .......... .......... 393 TGCCTGGGTA TAAGATGACT CCTCTATTCC GGCATGTCAC TCTTTCCCCT ACTCCCCCTG 6493 .......... .......... .......... .......... .......... .......... 393 GCCTCCGCGT CAATTTTTCT TCTAGAAATG AATCTTTAGA AGCAAAATCA TGAGTTGGTG 6433 .......... .......... .......... .......... .......... .......... 393 AAACAGGGAA AGGTGCTATT TGCAACATTG TATACACAAA TTTGCCTTCC TTTTTTTCCA 6373 .......... .......... .......... .......... .......... .......... 393 TGTATAAATG TTACTCTTCT TTGTTTCATT TTATGTGATG CAGTTTAATT GGGCACAAAA 6313 .......... .......... .......... .......... .......... .......... 393 TTTGAAAGGG AGAGTAAGAC TTTTGAAATT TGTGGTCTAA AACAAGTCTT AGATATCTGT 6253 .......... .......... .......... .......... .......... .......... 393 GTGACTGCGG TAAGATGAGA ATTTTAAAGT TAAATACAGA ACGACATTAT TGCTTTTGGG 6193 .......... .......... .......... .......... .......... .......... 393 ACAACTAAAA ACTAAAATGC ATCACATAAG TTGGGACAGG TGGAGTAGTT TGGAAAATTG 6133 .......... .......... .......... .......... .......... .......... 393 TAATTTGTAA TCCATCTTTG AAGAACGCAC TTTTTTCTTG TCTTGTTGGT TGGATTATGG 6073 .......... .......... .......... .......... .......... .......... 393 TTCCTGCATT GAAAATGTAA ATTTGTTTCT ATTATTGATT AATGAGGTGT GGTTCGAACT 6013 .......... .......... .......... .......... .......... .......... 393 GACAACATTT ATTTTGCTTG TATTATTGAT ACTGATGTGT ACTCATGAAT TGGTTGTGAG 5953 .......... .......... .......... .......... .......... .......... 393 TATAGGATAT CTCTTAATTA ATACAATTTG AACCTTAAAG ATATAAAAAG CGAATTCATC 5893 .......... .......... .......... .......... .......... .......... 393 GTCCAACTGG TTTATTATCT TCAAATTTGA AAACAATATA AATTGAATAG AATTAACCCA 5833 .......... .......... .......... .......... .......... .......... 393 AAATATCTAA ACATGAATCT AATTAAGCCA AAAGCAATAG AACAAAACAA ATATATGTCC 5773 .......... .......... .......... .......... .......... .......... 393 CTCTTTGGAC TTTCTAGGCG TTACCACCAT TTTACGTTAA AAGGCAATGG TGCACCCGTC 5713 .......... .......... .......... .......... .......... .......... 393 ACCTTAAAAC CCTGGTATGA TTCTGGTGTT GAGTAAGGTA AATGTGTTCT AGAGTTCCTA 5653 .......... .......... .......... .......... .......... .......... 393 ACTCTCTGGA TGTGCACATT CTACTTGATG CATTCATCCT GATATTAGTG TTCACAATGA 5593 .......... .......... .......... .......... .......... .......... 393 TCTGCTTCTT TCTAATCTGT TTATGGGGTT GCAGATTAAT CTTCACAAAA TTAACTCTAA 5533 |||||| |||||||||| |||||||||| .......... .......... .......... ....ATTAAT CTTCACAAAA TTAACTCTAA 419 GCTCCAGAAT CAATCTGAGG GAAAAAGAAA ACATGTTTAC GTGGAAAATG GGGAGACATT 5473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCCAGAAT CAATCTGAGG GAAAAAGAAA ACATGTTTAC GTGGAAAATG GGGAGACATT 479 CAACTATATT GATAGCCTTC CAGAAGAGAG AAACCATCCT ACTGCAATCA CTGGATCTCA 5413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACTATATT GATAGCCTTC CAGAAGAGAG AAACCATCCT ACTGCAATCA CTGGATCTCA 539 GGCTCTCACA TCCACAGGTA TTCAGCAGCA CAAGCAAGTT GATGGATCTG ATTTTGGGTA 5353 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTCTCACA TCCACAGGTA TTCAGCAGCA CAAGCAAGTT GATGGATCTG ATTTTGGGTA 599 TTTTCAGGAT GGCTTTTCTT ACTTATCTTC AGATTACAGT CATTCAGATC AGACTACGGT 5293 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCAGGAT GGCTTTTCTT ACTTATCTTC AGATTACAGT CATTCAGATC AGACTACGGT 659 TTGTCCAACC CTATCCACAA TTAAATCTAA AAAAAGCTGT CTCGTGACTC TTTCTGCTAA 5233 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTCCAACC CTATCCACAA TTAAATCTAA AAAAAGCTGT CTCGTGACTC TTTCTGCTAA 719 GGACTCCTGT GCGACAAATC AGATGCAGTT GATGGAAAGC TTACCTGATC CTTCTTTTCA 5173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACTCCTGT GCGACAAATC AGATGCAGTT GATGGAAAGC TTACCTGATC CTTCTTTTCA 779 GGTGGCTGGT ATAGGAACAA ATGAAAATAT GGTGGACAAG CTACTTCAAC GTTCTGTAAT 5113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGGCTGGT ATAGGAACAA ATGAAAATAT GGTGGACAAG CTACTTCAAC GTTCTGTAAT 839 TAAGCATGAA AACAACAGGG ATCTTGAAAG TGTCAGCACG GGAATTCCAG CAGAAGTAGG 5053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGCATGAA AACAACAGGG ATCTTGAAAG TGTCAGCACG GGAATTCCAG CAGAAGTAGG 899 TTCCTCTATT GTAAAGGAGA GCTCTTGCAC AAGTTCTGGG TTGAATGAAA TTTCTGAGGA 4993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTCTATT GTAAAGGAGA GCTCTTGCAC AAGTTCTGGG TTGAATGAAA TTTCTGAGGA 959 GGCAGATAGT TTTCATCAGC TTGAACATGT CATGGAACGG GTATAAAATC TCAATGAAAA 4933 |||||||||| |||||||||| |||||||||| |||||||||| GGCAGATAGT TTTCATCAGC TTGAACATGT CATGGAACGG .......... .......... 999 CTAATATGCA TTTTTGATAT TGTTTGGTGA TGAGTTTCAT CAAGGTTTGT TTTAAGTGAG 4873 .......... .......... .......... .......... .......... .......... 999 TGATTTGACT AAACAAATTT GGCACACCTT ATTTGTGTAG GTCAATAGCT CAAACGACAT 4813 .......... .......... .......... .......... .......... .......... 999 GTGCAATGCT TTTAGATGGT TCTCAGCTGG ATTAAGATAG TTTTTTAGTC GAGGGACAAT 4753 .......... .......... .......... .......... .......... .......... 999 ATTAATGACA AACATATTAT ACAAATTCCT ATATTCTGGG AAGGTTAATG ATGTGCAGCT 4693 .......... .......... .......... .......... .......... .......... 999 ACACACTCTT GTAGCTTCAC GCAGTCATAG AGAACTATTC TATTTTGTCA GGAAGTTGTC 4633 .......... .......... .......... .......... .......... .......... 999 ACACAGCATG CTGTAGCATT GTGCATACAT CTGACTTTTT CTAACCATTC TAAATTAGAG 4573 .......... .......... .......... .......... .......... .......... 999 ATCTTTGTTA TTTAATTGAG ACATGTGAAG ATGCTGAGTA AATAGGAACT CATTTGGTCC 4513 .......... .......... .......... .......... .......... .......... 999 TCTTATTCAT TATTTATATT TATACAGATC ACATATTAAA TTATTTTTTG TGTTAGAATA 4453 .......... .......... .......... .......... .......... .......... 999 ATTCATATTA GTGATGGCGT TTTACTAAGA CTTATTTAGA AAAATCTTTG TTCATGTATA 4393 .......... .......... .......... .......... .......... .......... 999 TCTATAGTAA CCTATATCAT ACTATTGCCT ATAGCTACAG AATATAGATA TAGAAAAGAG 4333 .......... .......... .......... .......... .......... .......... 999 TATTTGTCTC TTAGTGCATG TTTGTGTTGC AGATAGCAAT GCAGAGAGCT GATTGCTTAT 4273 .......... .......... .......... .......... .......... .......... 999 TTAGTACAAC AGACAGCCTT AATATAAAAG CTGTTCCTCA TCATCTTGCT GCTTGCTTAT 4213 .......... .......... .......... .......... .......... .......... 999 TTTAAATTAT TAATCAGCGG ATGTGCAAAA GCCTTCCAAA GTCTGACTTA TCGTTGAGTG 4153 .......... .......... .......... .......... .......... .......... 999 TCTTGAAACT ATCTTTGTGT TAATCCTGTA AACTTGGGCT AGGAAGGGGC AGTTAGCAGA 4093 .......... .......... .......... .......... .......... .......... 999 TTTGGTATGT GGTTCTTCAA GTTTATACAT TTAGTTGGAA ATCAACTTTC TTTTCAGTAC 4033 .......... .......... .......... .......... .......... .......... 999 ATGCATGTTT GTTAGCTCAC TCTGTTGAGC CTTCTGGTTT AGTTGGATGT AAGAACAAAG 3973 |||||||| |||||||||| .......... .......... .......... .......... ..TTGGATGT AAGAACAAAG 1017 CTACGGATAA GGGATAGCTT GTATCGGTTG GCTCAGAGTG CTGAACAAAG GCTTAGACAT 3913 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACGGATAA GGGATAGCTT GTATCGGTTG GCTCAGAGTG CTGAACAAAG GCTTAGACAT 1077 GCTAATCTCA ATAATGGATC TGGTGATGAT AGTCACACAA GCAGAGCATT TGATGATGAT 3853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAATCTCA ATAATGGATC TGGTGATGAT AGTCACACAA GCAGAGCATT TGATGATGAT 1137 GGAGCATACA GGTTGGTATC GTTTCTTGAT GCCTTGGTCT ACATGCATAC TTCCCATATA 3793 |||||||||| | GGAGCATACA G......... .......... .......... .......... .......... 1148 GGCCGTATCA TAGTTTGCAT ACTTCAAGCA CACGGTATGT TTGGTTTAGT TAGTGAAGAT 3733 .......... .......... .......... .......... .......... .......... 1148 CTTATGAAGC ACATTTCTCA CCCTTCGAGT TTGGAAAGTA AGTAGGTCTA GTCAGTCACA 3673 .......... .......... .......... .......... .......... .......... 1148 CCTTGAATAA GCACTTTTCT TTTCTTGATA CCAGTAATCA TACTGGTAAT GTGATAGATT 3613 .......... .......... .......... .......... .......... .......... 1148 CTGTTGGCTT CCTTTCTGTG GTCTTAACAT CTATTGGCTT GTTTTTCAGA TGCACAGGAT 3553 | |||||||||| .......... .......... .......... .......... .........A TGCACAGGAT 1159 ATTTGGACAC GGAGACAGAC ACTAACTCTA TAGATCGATC TATTGCTCAC TTACTCTTCC 3493 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGACAC GGAGACAGAC ACTAACTCTA TAGATCGATC TATTGCTCAC TTACTCTTCC 1219 ACAGGCCTTC AAACTCATCA GTGATGGCTG ATTCTTTGGC TTTGGAGTCA CCTTCCACGG 3433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACAGGCCTTC AAACTCATCA GTGATGGCTG ATTCTTTGGC TTTGGAGTCA CCTTCCACG. 1278 TAGGTGTTTC TGCATATGCT TCCAAAAATT TCATGTTCAA CACCCTGTAT CTCAAACACA 3373 .......... .......... .......... .......... .......... .......... 1278 CCCTGCAACT TGTCAATGAA CAGATTTTCG AGACATTACT CAGCCCACCA ATGATTGATG 3313 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...ATTTTCG AGACATTACT CAGCCCACCA ATGATTGATG 1315 AGAACTTGAT TTCTGCTGGA GAAAATGCAG CCGAACCAGA TAAAGGCACG AAATATTAAA 3253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAACTTGAT TTCTGCTGGA GAAAATGCAG CCGAACCAGA TAAAGGCACG AAATATTAAA 1375 CAGGCTTCTA TACAAATGGG TTGTGTTTAT TTCAATTTAT GTCGCATGGA CTCGCCTACA 3193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGCTTCTA TACAAATGGG TTGTGTTTAT TTCAATTTAT GTCGCATGGA CTCGCCTACA 1435 TGTATGTGCA TGTAAGTATC TGCTATGGAT ACTTATATAC TCTTTTGTTG TTTAGTGTAA 3133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATGTGCA TGTAAGTATC TGCTATGGAT ACTTATATAC TCTTTTGTTG TTTAGTGTAA 1495 TTCGAAGAAT CTAAACAGTA TGAGAATGAG GATCTATGTC AAATAGCTTA CAGTTACTCG 3073 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGAAGAAT CTAAACAGTA TGAGAATGAG GATCTATGTC AAATAGCTTA CAGTTACTCG 1555 TGTGTTTGTG TATGAGAATT ATCAAGAATC TCAAATGAGA AATTATTTCA TGTA 3019 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| TGTGTTTGTG TATGAGAATT ATCAAGAATC TCAAATGAGA AATTATTTCA TGTA 1609 hqPGS_C04HBa0127E11.1-_SGN-U319645+ (8112 8057,7956 7620,5558 4953,3990 3842,3563 3434,3349 3019) ******************************************************************************** EST sequence 43 +strand 795 n (File: SGN-U319644+) 1 CTGGAGGTGG ATTGAGGTCA GATTTGGAGT TTGCCTTCTC AACATCCAGT GCACTTGAAA 61 ATATCTCTGG AATGCAGGAA GCTTCCAGGT CAAAGGAAAC AGGCAATTCA ATTAATGATT 121 CTGGCACTAA AGATCAACTC TTCAGTCAGA CTGGCAGTTC AATGCCATCA GAGGATGAAT 181 CAGCCGTTCT GAGTCATCTA TCTTTTACAA ATGGTTCAAG TGATTCAGAT TTCAAGATAG 241 TGCCCATAAA GAAGATTAAT CTTCACAAAA TTAACTCTAA GCTCCAGAAT CAATCTGAGG 301 GAAAAAGAAA ACATGTTTAC GTGGAAAATG GGGAGACATT CAACTATATT GATAGCCTTC 361 CAGAAGAGAG AAACCATCCT ACTGCAATCA CTGGATCTCA GGCTCTCACA TCCACAGGTG 421 GCTGGTATAG GAACAAATGA AAATATGGTG GACAAGCTAC TTCAACGTTC TGTAATTAAG 481 CATGAAAACA ACAGGGATCT TGAAAGTGTC AGCACGGGAA TTCCAGCAGA AGTAGGTTCC 541 TCTATTGTAA AGGAGAGCTC TTGCACAAGT TCTGGGTTGA ATGAAATTTC TGAGGAGGCA 601 GATAGTTTTC ATCAGCTTGA ACATGTCATG GAACGGTTGG ATGTAAGAAC AAAGCTACGG 661 ATAAGGGATA GCTTGTATCG GTTGGCTCAG AGTGCTGAAC AAAGGCTTAG ACATGCTAAT 721 CTCAATAATG GATCTGGTGA TGATAGTCAC ACAAGCAGAG CATTTGATGA TGATGGAGCA 781 TACAGATGCA CAGGA Predicted gene structure (within gDNA segment 8473 to 3132): Exon 1 7873 7620 ( 254 n); cDNA 1 254 ( 254 n); score: 1.000 Intron 1 7619 5559 (2061 n); Pd: 0.989 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 2 5558 5396 ( 163 n); cDNA 255 417 ( 163 n); score: 1.000 Intron 2 5395 5172 ( 224 n); Pd: 0.373 (s: 1.00), Pa: 0.747 (s: 1.00) Exon 3 5171 4953 ( 219 n); cDNA 418 636 ( 219 n); score: 1.000 Intron 3 4952 3991 ( 962 n); Pd: 0.994 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 4 3990 3842 ( 149 n); cDNA 637 785 ( 149 n); score: 1.000 Intron 4 3841 3564 ( 278 n); Pd: 0.986 (s: 1.00), Pa: 0.997 (s: 0) Exon 5 3563 3554 ( 10 n); cDNA 786 795 ( 10 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-U319644+ 1.000 795 1.000 C PGS_C04HBa0127E11.1-_SGN-U319644+ (7873 7620,5558 5396,5171 4953,3990 3842,3563 3554) Alignment (genomic DNA sequence = upper lines): CTGGAGGTGG ATTGAGGTCA GATTTGGAGT TTGCCTTCTC AACATCCAGT GCACTTGAAA 7814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGAGGTGG ATTGAGGTCA GATTTGGAGT TTGCCTTCTC AACATCCAGT GCACTTGAAA 60 ATATCTCTGG AATGCAGGAA GCTTCCAGGT CAAAGGAAAC AGGCAATTCA ATTAATGATT 7754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCTCTGG AATGCAGGAA GCTTCCAGGT CAAAGGAAAC AGGCAATTCA ATTAATGATT 120 CTGGCACTAA AGATCAACTC TTCAGTCAGA CTGGCAGTTC AATGCCATCA GAGGATGAAT 7694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCACTAA AGATCAACTC TTCAGTCAGA CTGGCAGTTC AATGCCATCA GAGGATGAAT 180 CAGCCGTTCT GAGTCATCTA TCTTTTACAA ATGGTTCAAG TGATTCAGAT TTCAAGATAG 7634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCCGTTCT GAGTCATCTA TCTTTTACAA ATGGTTCAAG TGATTCAGAT TTCAAGATAG 240 TGCCCATAAA GAAGGTAAAT TATTAATTTA GTGTACATCG GGCTTTCTGT TTAGCCTTTT 7574 |||||||||| |||| TGCCCATAAA GAAG...... .......... .......... .......... .......... 254 ATTCCACCTC AGCTTAACCT TTAAGGTGTT CTATTTGAAG ATTGTTGAAT TCAATGGAGG 7514 .......... .......... .......... .......... .......... .......... 254 GATCAGGTTG AGATTTTGTC TAACATGCAC ACATGAACTA GTGATAGAGT GTTATTGGCG 7454 .......... .......... .......... .......... .......... .......... 254 TTCAGCATGT TCATCTAATT TAAAATCTTA AGCTGATAGA GAGAACACAC TTTTATTTAC 7394 .......... .......... .......... .......... .......... .......... 254 TTAATTATGT TTCCAACATG TCCTTTACAT TTGGACTTGA TTCTTTTTCA TGGGCCAAGC 7334 .......... .......... .......... .......... .......... .......... 254 ATATGTAGAT TCTTTTTTGT TAATGGGTAG CAATGAATTC CAAACCCAGT ACATGTGGCT 7274 .......... .......... .......... .......... .......... .......... 254 GCGGTAATAC CGTGTTGACT CTGTCATCAT CTCATCTAAA AACTCATGTT ATATCTTTCA 7214 .......... .......... .......... .......... .......... .......... 254 TAAGCACTCT TTCTTTTCCA AAATCTTGTC TTAAGCAAGG AAATACATGC ATTGATGAGG 7154 .......... .......... .......... .......... .......... .......... 254 TGCACTGTCG CCGGCACCAA TGGTTTTGAC TCTATTTTTA TGCGTGAAAC TTCTCAAGAA 7094 .......... .......... .......... .......... .......... .......... 254 ACATATATGA ACAAAGTGGC TCCCCTCATG TAAAGGGACA ACTGGGTGCA CTGTTTCATC 7034 .......... .......... .......... .......... .......... .......... 254 TAAGATATTC TGGTAATGAA CACAGTTGAA GCAATTTTTT TCATTTGTTC CTCACCTCAG 6974 .......... .......... .......... .......... .......... .......... 254 TCTGATCTCT GTTTCTTTAG TTTCTTTGTT GTTTCTGATT CTTCACTTGT TTTTACTCTT 6914 .......... .......... .......... .......... .......... .......... 254 TAAAAACAAA TCTTCACAGC AAAATTAGGA AAGGATGACT AGGTGAGCAA TTTGTAGCAC 6854 .......... .......... .......... .......... .......... .......... 254 TTTTTTTTTT TTGAAATGTT CACAATTTTA TATATCAGTG CATAAAAATT GAGCCAACAA 6794 .......... .......... .......... .......... .......... .......... 254 CCATAATTTG AGACATGACA ACCTGATCAA ATACTATCCT ATACACTTAT ATATATTCTA 6734 .......... .......... .......... .......... .......... .......... 254 AACACACTAA GATAGATTCA GTAGCCAGTG TGAGTTCTTT TTTACACAAA CAAAAAAATA 6674 .......... .......... .......... .......... .......... .......... 254 AGAAAAGTGA ATTCATCTTG ATCTACTGAG TCGGACTATC CTTGCTTGAA AGAAATCTCT 6614 .......... .......... .......... .......... .......... .......... 254 GATTCCTTTC CCTACAGACA GACCACCATA TCTGAAATGG TATCCTTTTT CATCTCCTTT 6554 .......... .......... .......... .......... .......... .......... 254 ATGCCTGGGT ATAAGATGAC TCCTCTATTC CGGCATGTCA CTCTTTCCCC TACTCCCCCT 6494 .......... .......... .......... .......... .......... .......... 254 GGCCTCCGCG TCAATTTTTC TTCTAGAAAT GAATCTTTAG AAGCAAAATC ATGAGTTGGT 6434 .......... .......... .......... .......... .......... .......... 254 GAAACAGGGA AAGGTGCTAT TTGCAACATT GTATACACAA ATTTGCCTTC CTTTTTTTCC 6374 .......... .......... .......... .......... .......... .......... 254 ATGTATAAAT GTTACTCTTC TTTGTTTCAT TTTATGTGAT GCAGTTTAAT TGGGCACAAA 6314 .......... .......... .......... .......... .......... .......... 254 ATTTGAAAGG GAGAGTAAGA CTTTTGAAAT TTGTGGTCTA AAACAAGTCT TAGATATCTG 6254 .......... .......... .......... .......... .......... .......... 254 TGTGACTGCG GTAAGATGAG AATTTTAAAG TTAAATACAG AACGACATTA TTGCTTTTGG 6194 .......... .......... .......... .......... .......... .......... 254 GACAACTAAA AACTAAAATG CATCACATAA GTTGGGACAG GTGGAGTAGT TTGGAAAATT 6134 .......... .......... .......... .......... .......... .......... 254 GTAATTTGTA ATCCATCTTT GAAGAACGCA CTTTTTTCTT GTCTTGTTGG TTGGATTATG 6074 .......... .......... .......... .......... .......... .......... 254 GTTCCTGCAT TGAAAATGTA AATTTGTTTC TATTATTGAT TAATGAGGTG TGGTTCGAAC 6014 .......... .......... .......... .......... .......... .......... 254 TGACAACATT TATTTTGCTT GTATTATTGA TACTGATGTG TACTCATGAA TTGGTTGTGA 5954 .......... .......... .......... .......... .......... .......... 254 GTATAGGATA TCTCTTAATT AATACAATTT GAACCTTAAA GATATAAAAA GCGAATTCAT 5894 .......... .......... .......... .......... .......... .......... 254 CGTCCAACTG GTTTATTATC TTCAAATTTG AAAACAATAT AAATTGAATA GAATTAACCC 5834 .......... .......... .......... .......... .......... .......... 254 AAAATATCTA AACATGAATC TAATTAAGCC AAAAGCAATA GAACAAAACA AATATATGTC 5774 .......... .......... .......... .......... .......... .......... 254 CCTCTTTGGA CTTTCTAGGC GTTACCACCA TTTTACGTTA AAAGGCAATG GTGCACCCGT 5714 .......... .......... .......... .......... .......... .......... 254 CACCTTAAAA CCCTGGTATG ATTCTGGTGT TGAGTAAGGT AAATGTGTTC TAGAGTTCCT 5654 .......... .......... .......... .......... .......... .......... 254 AACTCTCTGG ATGTGCACAT TCTACTTGAT GCATTCATCC TGATATTAGT GTTCACAATG 5594 .......... .......... .......... .......... .......... .......... 254 ATCTGCTTCT TTCTAATCTG TTTATGGGGT TGCAGATTAA TCTTCACAAA ATTAACTCTA 5534 ||||| |||||||||| |||||||||| .......... .......... .......... .....ATTAA TCTTCACAAA ATTAACTCTA 279 AGCTCCAGAA TCAATCTGAG GGAAAAAGAA AACATGTTTA CGTGGAAAAT GGGGAGACAT 5474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCCAGAA TCAATCTGAG GGAAAAAGAA AACATGTTTA CGTGGAAAAT GGGGAGACAT 339 TCAACTATAT TGATAGCCTT CCAGAAGAGA GAAACCATCC TACTGCAATC ACTGGATCTC 5414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACTATAT TGATAGCCTT CCAGAAGAGA GAAACCATCC TACTGCAATC ACTGGATCTC 399 AGGCTCTCAC ATCCACAGGT ATTCAGCAGC ACAAGCAAGT TGATGGATCT GATTTTGGGT 5354 |||||||||| |||||||| AGGCTCTCAC ATCCACAG.. .......... .......... .......... .......... 417 ATTTTCAGGA TGGCTTTTCT TACTTATCTT CAGATTACAG TCATTCAGAT CAGACTACGG 5294 .......... .......... .......... .......... .......... .......... 417 TTTGTCCAAC CCTATCCACA ATTAAATCTA AAAAAAGCTG TCTCGTGACT CTTTCTGCTA 5234 .......... .......... .......... .......... .......... .......... 417 AGGACTCCTG TGCGACAAAT CAGATGCAGT TGATGGAAAG CTTACCTGAT CCTTCTTTTC 5174 .......... .......... .......... .......... .......... .......... 417 AGGTGGCTGG TATAGGAACA AATGAAAATA TGGTGGACAA GCTACTTCAA CGTTCTGTAA 5114 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GTGGCTGG TATAGGAACA AATGAAAATA TGGTGGACAA GCTACTTCAA CGTTCTGTAA 475 TTAAGCATGA AAACAACAGG GATCTTGAAA GTGTCAGCAC GGGAATTCCA GCAGAAGTAG 5054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGCATGA AAACAACAGG GATCTTGAAA GTGTCAGCAC GGGAATTCCA GCAGAAGTAG 535 GTTCCTCTAT TGTAAAGGAG AGCTCTTGCA CAAGTTCTGG GTTGAATGAA ATTTCTGAGG 4994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCCTCTAT TGTAAAGGAG AGCTCTTGCA CAAGTTCTGG GTTGAATGAA ATTTCTGAGG 595 AGGCAGATAG TTTTCATCAG CTTGAACATG TCATGGAACG GGTATAAAAT CTCAATGAAA 4934 |||||||||| |||||||||| |||||||||| |||||||||| | AGGCAGATAG TTTTCATCAG CTTGAACATG TCATGGAACG G......... .......... 636 ACTAATATGC ATTTTTGATA TTGTTTGGTG ATGAGTTTCA TCAAGGTTTG TTTTAAGTGA 4874 .......... .......... .......... .......... .......... .......... 636 GTGATTTGAC TAAACAAATT TGGCACACCT TATTTGTGTA GGTCAATAGC TCAAACGACA 4814 .......... .......... .......... .......... .......... .......... 636 TGTGCAATGC TTTTAGATGG TTCTCAGCTG GATTAAGATA GTTTTTTAGT CGAGGGACAA 4754 .......... .......... .......... .......... .......... .......... 636 TATTAATGAC AAACATATTA TACAAATTCC TATATTCTGG GAAGGTTAAT GATGTGCAGC 4694 .......... .......... .......... .......... .......... .......... 636 TACACACTCT TGTAGCTTCA CGCAGTCATA GAGAACTATT CTATTTTGTC AGGAAGTTGT 4634 .......... .......... .......... .......... .......... .......... 636 CACACAGCAT GCTGTAGCAT TGTGCATACA TCTGACTTTT TCTAACCATT CTAAATTAGA 4574 .......... .......... .......... .......... .......... .......... 636 GATCTTTGTT ATTTAATTGA GACATGTGAA GATGCTGAGT AAATAGGAAC TCATTTGGTC 4514 .......... .......... .......... .......... .......... .......... 636 CTCTTATTCA TTATTTATAT TTATACAGAT CACATATTAA ATTATTTTTT GTGTTAGAAT 4454 .......... .......... .......... .......... .......... .......... 636 AATTCATATT AGTGATGGCG TTTTACTAAG ACTTATTTAG AAAAATCTTT GTTCATGTAT 4394 .......... .......... .......... .......... .......... .......... 636 ATCTATAGTA ACCTATATCA TACTATTGCC TATAGCTACA GAATATAGAT ATAGAAAAGA 4334 .......... .......... .......... .......... .......... .......... 636 GTATTTGTCT CTTAGTGCAT GTTTGTGTTG CAGATAGCAA TGCAGAGAGC TGATTGCTTA 4274 .......... .......... .......... .......... .......... .......... 636 TTTAGTACAA CAGACAGCCT TAATATAAAA GCTGTTCCTC ATCATCTTGC TGCTTGCTTA 4214 .......... .......... .......... .......... .......... .......... 636 TTTTAAATTA TTAATCAGCG GATGTGCAAA AGCCTTCCAA AGTCTGACTT ATCGTTGAGT 4154 .......... .......... .......... .......... .......... .......... 636 GTCTTGAAAC TATCTTTGTG TTAATCCTGT AAACTTGGGC TAGGAAGGGG CAGTTAGCAG 4094 .......... .......... .......... .......... .......... .......... 636 ATTTGGTATG TGGTTCTTCA AGTTTATACA TTTAGTTGGA AATCAACTTT CTTTTCAGTA 4034 .......... .......... .......... .......... .......... .......... 636 CATGCATGTT TGTTAGCTCA CTCTGTTGAG CCTTCTGGTT TAGTTGGATG TAAGAACAAA 3974 ||||||| |||||||||| .......... .......... .......... .......... ...TTGGATG TAAGAACAAA 653 GCTACGGATA AGGGATAGCT TGTATCGGTT GGCTCAGAGT GCTGAACAAA GGCTTAGACA 3914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTACGGATA AGGGATAGCT TGTATCGGTT GGCTCAGAGT GCTGAACAAA GGCTTAGACA 713 TGCTAATCTC AATAATGGAT CTGGTGATGA TAGTCACACA AGCAGAGCAT TTGATGATGA 3854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTAATCTC AATAATGGAT CTGGTGATGA TAGTCACACA AGCAGAGCAT TTGATGATGA 773 TGGAGCATAC AGGTTGGTAT CGTTTCTTGA TGCCTTGGTC TACATGCATA CTTCCCATAT 3794 |||||||||| || TGGAGCATAC AG........ .......... .......... .......... .......... 785 AGGCCGTATC ATAGTTTGCA TACTTCAAGC ACACGGTATG TTTGGTTTAG TTAGTGAAGA 3734 .......... .......... .......... .......... .......... .......... 785 TCTTATGAAG CACATTTCTC ACCCTTCGAG TTTGGAAAGT AAGTAGGTCT AGTCAGTCAC 3674 .......... .......... .......... .......... .......... .......... 785 ACCTTGAATA AGCACTTTTC TTTTCTTGAT ACCAGTAATC ATACTGGTAA TGTGATAGAT 3614 .......... .......... .......... .......... .......... .......... 785 TCTGTTGGCT TCCTTTCTGT GGTCTTAACA TCTATTGGCT TGTTTTTCAG ATGCACAGGA 3554 |||||||||| .......... .......... .......... .......... .......... ATGCACAGGA 795 hqPGS_C04HBa0127E11.1-_SGN-U319644+ (7873 7620,5558 5396,5171 4953,3990 3842,3563 3554) ******************************************************************************** EST sequence 40 +strand 1101 n (File: SGN-U326880+) 1 ACAAGTAATT TTGGAAGTTG ATTTTGATTG TTTGTAAATG AGTTCCTTCT TTGTTGTTGT 61 TTTGTTGCTG TATGAATATA AGGAGGAGTG CTTTCAGCTA ATGAATTTTT TAATTTTATT 121 TTTTGCTGTA AAAAAAAAAA GAGTAACTTT GGAAAATGGA TGTTTACTTA AGGTGAGAAG 181 AGTTTTAAGC TTATGAACTG ATTTTGCTTG TTGAAAAATG AAAGAGAAGA AATAAATTTG 241 GAAATTGAAT TTTAGTTAAG GAGAAGATTT TCAGCTTATG AAACGGATTT TTAGTGAAGG 301 AGAGGAATTT ATTTGTCAAA TACATTGATA GCCTTAAAAA GAGCAGAACT TTCGTATCTC 361 TAACGGTGGA AATAATCTTA CCTTAATCCA AACTATGATG ATTTCAATTT AAAGAAACAA 421 ATTCTGTGTT CTATTTTTGA TTTACTCATT TTAAGGAAGC ATCCTCTCTA GTTGTTTACA 481 GCTAAAATTC TGTAACTGAT GCTATAGCTT AAAGATGTAG CTTTGGATGA AGTTTGCATT 541 AGCGATGATC ATATAGTGCC ACATCCTAGT TGTGAACATG CCAATGAAGT TTCTCTCCCA 601 GACTGATAGC CGTAAGAAAC CCCGGTGTGA AATAATTGGT TTATTAAGAA CCATAGGAGC 661 AATCTTCTCT TAAATATAAT AATCAGCAAA AGGGCAAAGA AGTTCCTCCT TTATATAGTA 721 CAATGATGGA GAAGGACTCG AGGGCTGGTA GGCTTGATTG CGTGTTCCCT TCTAAACATG 781 ATAAGGACTC TGTTGAAGAA GTTTCAAGTT TATCATCTGA AAATACTAGG ACATCAAATG 841 ATTGCTCCAG AAGTAACAAT ATAGACTCCA TTAGCGGTGA GGTCCAGCCC AATAACCCCA 901 TTCTGGATGA CAAGAATTCT GCAGTTAGGG ACAACTTGCA TAGCTATCCT CTTGGTCCCG 961 TTTCTCAGGC AGATGATGAT CTTGGTTTTC TTGATAGTAA TCATGAGGAT AAAAAGTAGT 1021 ACCGAGCTCT TATATTATAA CTGGCCTGAG ATGGAAAACT TTGAGGATGT TGACAGGATG 1081 TTCNGAAAGT TGTGATTCAA C Predicted gene structure (within gDNA segment 9740 to 7269): Exon 1 9140 8057 (1084 n); cDNA 1 1085 (1085 n); score: 0.996 Intron 1 8056 7957 ( 100 n); Pd: 0.991 (s: 0.98), Pa: 0.894 (s: 0) Exon 2 7956 7942 ( 15 n); cDNA 1086 1101 ( 16 n); score: 0.833 MATCH C04HBa0127E11.1- SGN-U326880+ 0.996 1099 0.998 C PGS_C04HBa0127E11.1-_SGN-U326880+ (9140 8057,7956 7942) Alignment (genomic DNA sequence = upper lines): ACAAGTAATT TTGGAAGTTG ATTTTGATTG TTTGTAAATG AGTTCCTTCT TTGTTGTTGT 9081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGTAATT TTGGAAGTTG ATTTTGATTG TTTGTAAATG AGTTCCTTCT TTGTTGTTGT 60 TTTGTTGCTG TATGAATATA AGGAGGAGTG CTTTCAGCTA ATGAATTTTT TAATTTTATT 9021 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTGCTG TATGAATATA AGGAGGAGTG CTTTCAGCTA ATGAATTTTT TAATTTTATT 120 TTTTGCTGTA AAAAAAAAAA GAGTAACTTT GGAAAATGGA TGTTTACTTA AGGTGAGAAG 8961 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGCTGTA AAAAAAAAAA GAGTAACTTT GGAAAATGGA TGTTTACTTA AGGTGAGAAG 180 AGTTTTAAGC TTATGAACTG ATTTTGTTTG TTGAAAAATG AAAGAGAAGA AATAAATTTG 8901 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| AGTTTTAAGC TTATGAACTG ATTTTGCTTG TTGAAAAATG AAAGAGAAGA AATAAATTTG 240 GAAATTGAAT TTTAGTTAAG GAGAAGATTT TCAGCTTATG AAACGGATTT TTAGTGAAGG 8841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATTGAAT TTTAGTTAAG GAGAAGATTT TCAGCTTATG AAACGGATTT TTAGTGAAGG 300 AGAGGAATTT ATTTGTCAAA TACATTGATA GCCTTAAAAA GAGCAGAACT TTCGTATCTC 8781 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGAATTT ATTTGTCAAA TACATTGATA GCCTTAAAAA GAGCAGAACT TTCGTATCTC 360 TAACGGTGGA AATAATCTTA CCTTAATCCA AACTATGATG ATTTCAATTT AAAGAAACAA 8721 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACGGTGGA AATAATCTTA CCTTAATCCA AACTATGATG ATTTCAATTT AAAGAAACAA 420 ATTCTGTGTT CTATTTTTGA TTTACTCATT TTAAGGAAGC ATCCTCTCTA GTTGTTTACA 8661 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTGTGTT CTATTTTTGA TTTACTCATT TTAAGGAAGC ATCCTCTCTA GTTGTTTACA 480 GCTAAAATTC TGTAACTGAT GCTATAGCTT AAAGATGTAG CTTTGGATGA AGTTTGCATT 8601 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAAAATTC TGTAACTGAT GCTATAGCTT AAAGATGTAG CTTTGGATGA AGTTTGCATT 540 AGCGATGATC ATATAGTGCC ACATCCTAGT TGTGAACATG CCAATGAAGT TTCTCTCCCA 8541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCGATGATC ATATAGTGCC ACATCCTAGT TGTGAACATG CCAATGAAGT TTCTCTCCCA 600 GACTGATAGC CGTAAGAAAC CCCGGTGTGA AATAATTGGT TTATTAAGAA CCATAGGAGC 8481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTGATAGC CGTAAGAAAC CCCGGTGTGA AATAATTGGT TTATTAAGAA CCATAGGAGC 660 AATCTTCTCT TAAATATAAT AATCAGCAAA AGGGCAAAGA AGTTCCTCCT TTATATAGTA 8421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTTCTCT TAAATATAAT AATCAGCAAA AGGGCAAAGA AGTTCCTCCT TTATATAGTA 720 CAATGATGGA GAAGGACTCG AGGGCTGGTA GGCTTGATTG CGTGTTCCCT TCTAAACATG 8361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGATGGA GAAGGACTCG AGGGCTGGTA GGCTTGATTG CGTGTTCCCT TCTAAACATG 780 ATAAGGACTC TGTTGAAGAA GTTTCAAGTT TATCATCTGA AAATACTAGG ACATCAAATG 8301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGGACTC TGTTGAAGAA GTTTCAAGTT TATCATCTGA AAATACTAGG ACATCAAATG 840 ATTGCTCCAG AAGTAACAAT ATAGACTCCA TTAGCGGTGA GGTCCAGCCC AATAACCCCA 8241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCTCCAG AAGTAACAAT ATAGACTCCA TTAGCGGTGA GGTCCAGCCC AATAACCCCA 900 TTCTGGATGA CAAGAATTCT GCAGTTAGGG ACAACTTGCA TAGCTATCCT CTTGGTCCCG 8181 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGGATGA CAAGAATTCT GCAGTTAGGG ACAACTTGCA TAGCTATCCT CTTGGTCCCG 960 TTTCTCAGGC AGATGATGAT CTTGGTTTTC TTGATAGTAA TCATGAGGAT -AAAAGTAGT 8122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTTCTCAGGC AGATGATGAT CTTGGTTTTC TTGATAGTAA TCATGAGGAT AAAAAGTAGT 1020 ACCGAGCTCT TATATTATAA CTGGCCTGAG ATGGAAAACT TTGAGGATGT TGACAGGATG 8062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCGAGCTCT TATATTATAA CTGGCCTGAG ATGGAAAACT TTGAGGATGT TGACAGGATG 1080 TTCGGGTAAT TGTTGTCTCT AGTGTTTTTC ATGTGATTTT CTTTTTTTAT TCAGAGGAGA 8002 ||| | TTCNG..... .......... .......... .......... .......... .......... 1085 CTGACTAATA CTTTATGATT GCTCACTGTT TATAATATCT TCCAG-AAGT TGTGATTCAA 7943 |||| |||||||||| .......... .......... .......... .......... .....AAAGT TGTGATTCAA 1100 C 7942 | C 1101 hqPGS_C04HBa0127E11.1-_SGN-U326880+ (9140 8057,7956 7942) ******************************************************************************** EST sequence 8 +strand 906 n (File: SGN-U334276+) 1 AAAGCTGGAG CTCACCGCGG TGGCGGCCGC TCTAGAACTA GTGGATCCCC CGGGCTGCAG 61 GCTCAGCTTA AACCAGTTTT TTTCGATTCG ATGTTCGATA TATATAACGA AGTCAAATCT 121 CATATATTAT TAAAGACATA AATATAGATA AAGGTGACAG AGTTAGTTTA TCAACCTAAC 181 ATGTCTAATC CACCTAAGTT TGGGAAATTA AAGTTATTGA CCTACTCATT TATTAGTTTA 241 CTGGGTAAGA AATTAAAAAT AATATATAGT CTAAATTAAT TTATGAGAAT TTTTGTCAGA 301 ATATTTTCTT ATTTAGGGCC CGTTTGGATG GGCTTAATAA AAACAGCTTT AAAAAAGTAC 361 TTTTGAAAGT GCTGAAACTT ATTTCTAAAA TAAACAGTTA TGCATTTGGA TAAAAGTGCT 421 GAAGTTGTTA TGCCAAACGT GAAAAGCGAA AAATGGAAGA AAGAGATGTT AGGGTTATAT 481 GTGTAACTTG GAAATTGTAT AAAAATATTA AGGGCAAAAA GATAAAGATG TGATCAACTT 541 AAAACAGCTT ATAAGCTAAA AAAAAAAAAA AAAAACTCGA GGGGGGGCCC GGTACCCAAT 601 TCGCCCTATA GTGAGTCGTA TTACAATTCA CTGGCCGTCG TTTTACAACG TCGTGACTGG 661 GAAAACCCTG GCGTTACCCA ACTTAATCGC CTTGCAGCAC ATCCCCCTTT CGCCAGCTGG 721 CGTAATAGCG AAGAGGCCCG CACCGATCGC CCTTCCCAAC AGTTGCGCAG CCTGAATGGC 781 GAATGGCAAA TTGTAAGCGT TAATATTTTG TTAAAATTCG CGTTTAATTT TTTGTAAATC 841 AGCTCATTTT TTAACCATAG GGCGAAATCN GCAAAATCCC TTATAAATCA AAGATAGACC 901 GAGATC Predicted gene structure (within gDNA segment 8171 to 19108): Exon 1 9019 9034 ( 16 n); cDNA 250 265 ( 16 n); score: 0.750 Intron 1 9035 9157 ( 123 n); Pd: 0.000 (s: 0), Pa: 0.978 (s: 0) Exon 2 9158 9179 ( 22 n); cDNA 266 287 ( 22 n); score: 0.591 Intron 2 9180 13545 (4366 n); Pd: 0.843 (s: 0), Pa: 0.894 (s: 0) Exon 3 13546 13568 ( 23 n); cDNA 288 309 ( 22 n); score: 0.609 Intron 3 13569 14304 ( 736 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 4 14305 14428 ( 124 n); cDNA 310 432 ( 123 n); score: 0.895 Intron 4 14429 14883 ( 455 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.86) Exon 5 14884 15019 ( 136 n); cDNA 433 568 ( 136 n); score: 0.868 Intron 5 15020 15810 ( 791 n); Pd: 0.000 (s: 0.84), Pa: 0.672 (s: 0) Exon 6 15811 15817 ( 7 n); cDNA 569 575 ( 7 n); score: 0.714 MATCH C04HBa0127E11.1+ SGN-U334276+ 0.881 328 0.362 C PGS_C04HBa0127E11.1+_SGN-U334276+ (9019 9034,9158 9179,13546 13568,14305 14428,14884 15019,15811 15817) Alignment (genomic DNA sequence = upper lines): AAAATAAAAT TAAAAAATTC ATTAGCTGAA AGCACTCCTC CTTATATTCA TACAGCAACA 9078 ||| ||||| ||| | AAATTAAAAA TAATAT.... .......... .......... .......... .......... 265 AAACAACAAC AAAGAAGGAA CTCATTTACA AACAATCAAA ATCAACTTCC AAAATTACTT 9138 .......... .......... .......... .......... .......... .......... 265 GTTTTCCTTC ATTTTACAGC AAAACAAAAT CAGTTCATAA GGTGAAAACA CTCCTCCTCA 9198 | | |||| | || || | | .......... .........A TAGTCTAAAT TAATTTATGA G......... .......... 287 AATTCACAAA GCAATAAAAC TAAACCAAAA AAAAAAAAAA GTGTACATAA ATTGAGATCT 9258 .......... .......... .......... .......... .......... .......... 287 CACCACAAAA ACTCTCTGAA TCAAAACAGT ACCTCGCCGG AAAGTGATGA ATTCGCTTCG 9318 .......... .......... .......... .......... .......... .......... 287 CCGGATAATA AACAGTTGAG CTATACAACC CTAATTTGAT TGCTTTGAAA ATGAAAACCA 9378 .......... .......... .......... .......... .......... .......... 287 AAAAAACAAT AAAAATACTT TAAATTGAAT AAGTTAATGA AATTTTTTAA ATATATAGCA 9438 .......... .......... .......... .......... .......... .......... 287 GATGATGACA CGTCGATTTG TGTGGGAAAA GGGGGAGAAT CAAATTCGTG GACGAGAAAA 9498 .......... .......... .......... .......... .......... .......... 287 AACGGTTGAG ATGAGATCTG TTTCTGCAAT CTAATTGGTC CACGTATGAT GAAAACCGAC 9558 .......... .......... .......... .......... .......... .......... 287 ACGTGTCAGT TAATTTATAT GTTTATTACC GGTGGCTCAA TGTTTAGTGT TAATCCACCT 9618 .......... .......... .......... .......... .......... .......... 287 TTGGGATTGC GGAGTCCATT GAAATTTTTA TTTTGATTTG ATATTAAGTT TAAGAAAGTA 9678 .......... .......... .......... .......... .......... .......... 287 AAATGAATTT TTTAAATTTT ATTGCTTTAA GTTAAAGATC GTAATGAAAA AATAGATTAT 9738 .......... .......... .......... .......... .......... .......... 287 TTTTTTTTAA AACAAAAAAA AAAGTATGAT TAATAAATTG AAATGGAAGA AATAATATTG 9798 .......... .......... .......... .......... .......... .......... 287 TATTTTATGT TTGGTTATAC ATAGTTAATT AGTTGTAGAA TTACTTTATC TCAATATTTT 9858 .......... .......... .......... .......... .......... .......... 287 TATATAAACG AGATGAATTA TGTACTTTAT TACTCTTTAT CTCAATATTT TTATATAAAC 9918 .......... .......... .......... .......... .......... .......... 287 GAGATGAATT ATGTACTTTA TTACTTTTCA TCTAGTAAAC TAGTACAAAA AAAAATTTGG 9978 .......... .......... .......... .......... .......... .......... 287 GAAGAATTTA ATAAAATTAC TAGAAGTAGG GTAGGCCACG TAAATTGAAT TGTTGATTGT 10038 .......... .......... .......... .......... .......... .......... 287 TAAATATCAA CACTCGGGTA ATTTTCATAA TTAGAAAAAA TAATCATCAA GTATTACATT 10098 .......... .......... .......... .......... .......... .......... 287 TTTATTATCA AAAAACTTAC ACGAATCCTT TGTTTCTTGT CAATTTTAGA AAGGAAAAAT 10158 .......... .......... .......... .......... .......... .......... 287 ATTCATGAAC TATTCGAAAA TCGAAATAGG TTAACTTAAC CCTCTATCAT GTTTTCAACT 10218 .......... .......... .......... .......... .......... .......... 287 TCAAAATATC AGACCAAAGA GGTCAACGGT TCAAACCGTG AAAACAACCT CTTGCAGAGA 10278 .......... .......... .......... .......... .......... .......... 287 TTTTGTAACG CTACGCACAA TACACCCTTG TAATTCGTCA ACAGAAGTTA TAGTGCACTA 10338 .......... .......... .......... .......... .......... .......... 287 CACTGCCTTT TCTTTTCAGT CATATCACAA ATAGAACTTA AGAAACAAAT AGACAACAAT 10398 .......... .......... .......... .......... .......... .......... 287 TTTACAGTTC GAGAGGCACT GAAAACTAGC AGCATTTTGT AGTCTATCAC CACAAGATAC 10458 .......... .......... .......... .......... .......... .......... 287 AAGAAACAAG TTTTGTCTTC TCAAACGTGC TATGAATCCA CTGTACACCT GCTTGTACGT 10518 .......... .......... .......... .......... .......... .......... 287 AAACGAAAAA TATATCATCG CAACCATGAT GTTTGCACTG AGCACTGGGC AGAAAGCAAA 10578 .......... .......... .......... .......... .......... .......... 287 AAGCATTTCT CAAATACGCT GTGTTTCCAA AGGTTGAGAT TCAGTAAGTT AGAGAAATGC 10638 .......... .......... .......... .......... .......... .......... 287 AGCAAAGCCG TCAACCTCTG TCAAAGAAAA CTATCAGTAA GTTTGACAAA TGCAGCAAAG 10698 .......... .......... .......... .......... .......... .......... 287 CTGTGGACCT CTGTCAAAGA AAACTACCGC CAGGACCATC ACTCCTCTGT ATAAGAACTC 10758 .......... .......... .......... .......... .......... .......... 287 GGTCTCTTTC AATTGGCGTC AGATGTAGCT TGTGGCACCT CTTGGTATAT GCCCGATTCA 10818 .......... .......... .......... .......... .......... .......... 287 TCATTATATG AGTACCTACA TTTGATACAT CAATGAAAAA CAGTTAACAA AAGTACTATT 10878 .......... .......... .......... .......... .......... .......... 287 TGCGACAGTT CAAATCACAC TACTACAATT GGGTCCACAC AAATTGCGAG GAACCAATCG 10938 .......... .......... .......... .......... .......... .......... 287 AAAATAGGAA GATCAATATC CCGATTTTGT CCAGTTAAAA CAGTTGAGTG TCATTACCAT 10998 .......... .......... .......... .......... .......... .......... 287 TGTCCTGATG ATGCATTGCA ATACAGTCCA GATGATGGAT CATAATAGTA GCCCAAACTG 11058 .......... .......... .......... .......... .......... .......... 287 CTGCTGTAGT AATAACTGAG ACGAAAAATA CAAAAAGAGT GTAAGAAGTT TAAGACAGAA 11118 .......... .......... .......... .......... .......... .......... 287 ATACAAAAAG AAATGCCCGA CATTAATGAC TGATTTCAAC TTTGGAGGCG CAGTTCGTCA 11178 .......... .......... .......... .......... .......... .......... 287 AACAATGGAA TTGAAGTTCC TAGACAGATA GAACATATGA ACCTTTCATG TCACTCTCAA 11238 .......... .......... .......... .......... .......... .......... 287 CATCCCATAT CTGCTCTTAT CAAGTCAATG TAGAAAGATT AGACAAGCAG GAAACCCATG 11298 .......... .......... .......... .......... .......... .......... 287 GTTATTTGGT AGTCCCTGCT ACTGCTAAAC AAAGGTGGAT ATCATATCGA GCAAACAAAC 11358 .......... .......... .......... .......... .......... .......... 287 TAGCATACAT GAACTTCCAA AATCAGTATG TGGGCAGAAA CTGACAATGG AATGGCAACC 11418 .......... .......... .......... .......... .......... .......... 287 CGACAGGAAC ACTTCTGCCA ATATTAGCTT GAAAAGAATG TTGAAAGAGT ATAAATTGGA 11478 .......... .......... .......... .......... .......... .......... 287 ACGGAAAACT CCGAAAGAAC TATGTTCAAA TAAATTTCAT AGGATCCTCT TCCTTTAGAA 11538 .......... .......... .......... .......... .......... .......... 287 CTACAACATT GGGTGATTCT TTGATTGAAC AAGGAAGATC CCTACAATAA TCTGCGCTCC 11598 .......... .......... .......... .......... .......... .......... 287 CACTTGAATC CAGTGGAATT TCAAAATGAG ACGGTTTGAT TTCTTATTTA CTAGGATGTC 11658 .......... .......... .......... .......... .......... .......... 287 TGCACTCTAT GAGCAGGAGG AGAAAAGTAG TACAATGAGC TAAAAGGTAG AAAACATACC 11718 .......... .......... .......... .......... .......... .......... 287 CAGAGGACTC ATCAAAGATA TAATCACCAC TTGAATCCAG TGGAATTTCA AAATGAGACG 11778 .......... .......... .......... .......... .......... .......... 287 GTTTAATTTC TTATTTACTA GGATGTCTGC ACACTATGAG CAGAAGGAGA AAAGTAGTGC 11838 .......... .......... .......... .......... .......... .......... 287 GATGAGCTAA AAGGTAGAAA ACATACCCAG AGGACTCATC AAAGACATAA TCACCATGCT 11898 .......... .......... .......... .......... .......... .......... 287 GATCACCTAC AGTTTACATT GAGTGGGAGT CACGTATGTG GAAAGGGGAA TATGCTTAAA 11958 .......... .......... .......... .......... .......... .......... 287 AAGAAACTTT TAATCTTATC TCACATAAAA TAATGGACTA AATTTGTCAA TAATGTCAAT 12018 .......... .......... .......... .......... .......... .......... 287 TGTAGATGTG TTTAGAGATC AAATTACCTC CATTAGGGGC AGGATTAGCT GGAGTATTTT 12078 .......... .......... .......... .......... .......... .......... 287 CATCGTCTTC ACCAAACATG TCAAATGCAT CATCGCTCTT GCTAGCTGAG TTATATGAAT 12138 .......... .......... .......... .......... .......... .......... 287 TAGATGAAGC CACATCTGTC TTATGCATAG GATGTCCTTC TGCAGTAGCA GTTGACCCAC 12198 .......... .......... .......... .......... .......... .......... 287 TGGGGAGGAA ACCTTCATCG AGAATACTAT AGGGCTTAGG CTGCATTGAT TCACTGGATT 12258 .......... .......... .......... .......... .......... .......... 287 TACCCTGTCT TGCTTGAGCT AACTTCTCGT ATCCCTCTGG ATCAACACAA AATGCAAATA 12318 .......... .......... .......... .......... .......... .......... 287 AGATAATACC GTCACTCATG CAGCTCAACA GAAATGTCAG CGCATGCAAG TGAAAATTAA 12378 .......... .......... .......... .......... .......... .......... 287 TTGTTCTTTA CTTCAGAACC CTAGCATAAA ACTTAAGTCA CCAATATCAT CCTTATAGTA 12438 .......... .......... .......... .......... .......... .......... 287 GAAAAAAGGC GAAGCCAGTA ACCAGGGGAA ATACTACTTC CTGTTTTTCT GTATATTTCC 12498 .......... .......... .......... .......... .......... .......... 287 CCTCCACGGC CCCCTTCCCC CCCCCCCCCC CCCCCCCTAA AAAAAAAGAA AGTTTTAACC 12558 .......... .......... .......... .......... .......... .......... 287 AGTTTGGTTA GGGAAAAGAC AAGAATGTAA TGGGAAAGAG ACAAGACTGC CATCATATAT 12618 .......... .......... .......... .......... .......... .......... 287 TTTCCACTTC CTTGAGTTGT GGTCATGGTG GATATAATGT CAGAGAAAAG AGGGAATAAC 12678 .......... .......... .......... .......... .......... .......... 287 ACAATGATAA GTACCTGCTT CCCGCTGGAA ACTCTCTTGC TTTTCTTCAT ACACATCTGT 12738 .......... .......... .......... .......... .......... .......... 287 GAAACAAGAA ATAGACTAAA AGATTAGAAC CGTCCTTGGT ATTCTATTCA ACTATTACCT 12798 .......... .......... .......... .......... .......... .......... 287 TTCAATACAG TTATTATGCA AACACACTTA ACTGTAATCT CCATTCTCCA TTAGCTTCAT 12858 .......... .......... .......... .......... .......... .......... 287 AGCATCTTCT GTTAGCTGAT CAAACAGCTG CTTAGTTTCT CCAGACATTT TGCCCTTGTT 12918 .......... .......... .......... .......... .......... .......... 287 ATTGTTTGAG GTACCTTTCA ATCTCCTTAA ACCTCGCAAA ACCTGTTGGA AGTAAGTTCT 12978 .......... .......... .......... .......... .......... .......... 287 TCCCATGAGT CCCAAAGCAA TAGAGAACAA CATCAACTTC ATAGCACAAA GATTCTTGGC 13038 .......... .......... .......... .......... .......... .......... 287 AGAAGTATTC AAACATAACA AGTGGATAAC TTTATCGTAC AAGGCCTGCC AGGTTCATAT 13098 .......... .......... .......... .......... .......... .......... 287 GAGGCAGCTA ATACAGGAAT AAAAACTAAA TGGTCTATGG TCTAAATTAA CAATAATGTC 13158 .......... .......... .......... .......... .......... .......... 287 GAGAGAACTA GCTGCAAAGC AAATCCGCTG TGAGCAAATT GCAAATAGGC AGCACGATTT 13218 .......... .......... .......... .......... .......... .......... 287 GTTTGGTTGG AAATGAAGGG ACAAAAATCA ACCAGCTTCT CAGTTACCAT TATCAAAAAA 13278 .......... .......... .......... .......... .......... .......... 287 AAAAAAATCA ACCAGCTTCC AGAAATTATC AAAAACAAAA TGATTGATCA CAGCTCTGAT 13338 .......... .......... .......... .......... .......... .......... 287 ACCCTAAATG CTAAACATGG TAATAAAACA AAAGAGTGAT ACATACTGAA AATAAGAGAG 13398 .......... .......... .......... .......... .......... .......... 287 AAGGGTATCC TGGTGTTCTT AAACACCACA CCAGATTCAG ATATTAACCT TCCAAGCAAA 13458 .......... .......... .......... .......... .......... .......... 287 TAGGCAAAGC CTTCTCTCAA ACAAAATCTA CTACCGTCTT CCTTTAATTG AATAGCATGT 13518 .......... .......... .......... .......... .......... .......... 287 ACCCTCAAAG CAACCTATGT TTAACAGATT TTTTGTAGAG AATAGAGAGA GTGACCTGCC 13578 | | |||||| || |||| .......... .......... .......AAT TTTTGT-CAG AATATTTTCT .......... 309 AGCACCCCCA ATGGACTGGA TGCCAGATGA CACACCTCTG CCGTGCAGGC ATCAGGAACT 13638 .......... .......... .......... .......... .......... .......... 309 TTTGGGTGAA GGCCTTACAC TTGAATATCC TGATTGACAA GGATAGATGA CCAAGGGAGG 13698 .......... .......... .......... .......... .......... .......... 309 GAAGGGGAAA AGAATAAATG GTGTGGTTTA CCAGTATGCT GGTCTGATGC AAAGCATCTT 13758 .......... .......... .......... .......... .......... .......... 309 ATCATTAACT TATTCATATT TGGAGAGAGG AAAGCTGTCA GAGGAAGCAA GCAAGTAACT 13818 .......... .......... .......... .......... .......... .......... 309 GACTGAGCAA TACAGCAAAC AATATGTTAA ATTTACTTGT TATTGAATGG ATGGCTGTGT 13878 .......... .......... .......... .......... .......... .......... 309 TTAGAGGAAG TATTTGTAGT GGAAATAAGT GGAGTTGTCA AAATATCAGA TGCAAAGTTG 13938 .......... .......... .......... .......... .......... .......... 309 ATGGTGCCAA TGTCTAACTA CCATGATGAA ATTTAATGAT GAACATAGCT CCTACAGGGT 13998 .......... .......... .......... .......... .......... .......... 309 GCGCAAAATT TTCGAAAGGA TGTGCTGTTC TGACGGGTAC CAAAAGTTCT CCTTCAGAAA 14058 .......... .......... .......... .......... .......... .......... 309 AGCCAATGAG GTATTTATTA TATTGCGGTG ATTCTAAAGT TTTAACCTAC ATATTTCTGG 14118 .......... .......... .......... .......... .......... .......... 309 AATTGGCTTT AACATGCACA AGTGCACACG ACTGTTAAAT TCAAATATTA AATGCCTTGG 14178 .......... .......... .......... .......... .......... .......... 309 GAATGAGCCC CCATAAAATC CACCTAGTTC TTTTTTAACT ACTCCAATTC TAATATGATT 14238 .......... .......... .......... .......... .......... .......... 309 CAAGAAACAT GCCTTGACTC ATTCATTTGT GTTCAACCAA AATTTGACAA AAAGTTGTGA 14298 .......... .......... .......... .......... .......... .......... 309 AATAACAATG TAAGGGCCCG TTTGGATGGG CTTAATAAAA GCAGCTTTAA AAAAGTACTT 14358 || | |||||||| |||||||||| |||||||||| ||||||||| |||||||||| ......TAT- TTAGGGCCCG TTTGGATGGG CTTAATAAAA ACAGCTTTAA AAAAGTACTT 362 TTGAAAGTGC TGAAACTTAT TTTTAAAATA AGCAGTTATG CGTTTGGATA AAAGTGATGA 14418 |||||||||| |||||||||| || ||||||| | |||||||| | |||||||| |||||| ||| TTGAAAGTGC TGAAACTTAT TTCTAAAATA AACAGTTATG CATTTGGATA AAAGTGCTGA 422 AGTTAAAAAA GCTTGATGTG TTTGGCAAAT AAGTGCTGAT AAACACCTTT TTAAATCAAA 14478 |||| | AGTTGTTATG .......... .......... .......... .......... .......... 432 ATGTCTTAAA TGCTCTTAAA AGCTGTTAAC ATAATAAAAG TTAATTTATT TATATTTTAC 14538 .......... .......... .......... .......... .......... .......... 432 AGCCATAAAT AATTATATTT TGCTATCATT CACATATTTC TTTCTCATCA CAAATTATTT 14598 .......... .......... .......... .......... .......... .......... 432 ATAAGAGGAA TATAAACTTA TTATAGATTT AAAAGATATA TAATTTGAAT AGATTAAAGA 14658 .......... .......... .......... .......... .......... .......... 432 ACGATTTAAG ATTTTATTTT AGTTTCATCC ATAGGTAATA ATAATTGTCT ATCATTCACA 14718 .......... .......... .......... .......... .......... .......... 432 TATTTCTTTA TTATCACAAA TTATTTATAA GAGGAATATA ATTTTTTATT TAAGTTATAT 14778 .......... .......... .......... .......... .......... .......... 432 GTGCAACTTA TTTTACATTT AAATAATATA TAATTTGAAT AGATCACTTG AAAGATTTAA 14838 .......... .......... .......... .......... .......... .......... 432 GATTTATTTT ATTTTCATTC ATTAGTAATA GTAATTGTCT ATCATCCACA CGTGAAAAGG 14898 ||| | ||||||||| .......... .......... .......... .......... .....CCAAA CGTGAAAAGC 447 AAAAAATAGA AGAAAGAGAT GTTAGGATTA TGTGGGTAAT TTGAAGATTG TATAAAAATA 14958 |||||| || |||||||||| |||||| ||| | || |||| ||| | |||| |||||||||| GAAAAATGGA AGAAAGAGAT GTTAGGGTTA TATGTGTAAC TTGGAAATTG TATAAAAATA 507 TTAAGGGCAA ACAGGTAAAA ATGTGGTCAA CTTAAAACAG CTTATAAGCT GGGGAAAAAA 15018 |||||||||| | || |||| ||||| |||| |||||||||| |||||||||| |||||| TTAAGGGCAA AAAGATAAAG ATGTGATCAA CTTAAAACAG CTTATAAGCT AAAAAAAAAA 567 AGCACCCCTA CCCCAGCTTT TAACTTTTGA CTTAAAATAA GTTTTTTTTA ACTTAAAATA 15078 | A......... .......... .......... .......... .......... .......... 568 AGTTGTTTTG AGTATTGTCA AACAGCTAAA TAAGTCAAAA ACCAGCTTTT AAGTCAGTTT 15138 .......... .......... .......... .......... .......... .......... 568 GACCAGCTTT TAAGCTGAGC CAAACAGGCT CTAAATCTTA ACAGCTCAAC CATAGCCTCT 15198 .......... .......... .......... .......... .......... .......... 568 CCATTTCTCA TTTGAAAACA ACAGCAAAAA GCCACAAAGA ACTTTGCTTG GACAATGAAG 15258 .......... .......... .......... .......... .......... .......... 568 AAAATATAAT ATGCAAGCAA CAGCAAACAC AGTATCAATA TGCAACCATT AGTACGAGAT 15318 .......... .......... .......... .......... .......... .......... 568 AATACATGAG GGAAAAGCAG ATAAGATTCA TGTTGAAACC ACCACTGAAG GAACCAGAAA 15378 .......... .......... .......... .......... .......... .......... 568 TGAGAGCACA TAAAATATTT AGAAGATATT AAAAAAAATC TACAAGCAAA TGCCATCAAC 15438 .......... .......... .......... .......... .......... .......... 568 AGTATTTATC CATTAAAAAA AATTAACAAA AAAAAACTAG AAAACACGAG GTGGGAATAG 15498 .......... .......... .......... .......... .......... .......... 568 TTACTGTTTC TCCTGGTTCG AGCACATCAG CAATTCGCCT CTTCATCTTT CCTAGTTGTT 15558 .......... .......... .......... .......... .......... .......... 568 CTGATGTAAG GTCTTGAATC TCATCTTCAT TTGATATCTT GATAGCTTTC TTCCCAGAAT 15618 .......... .......... .......... .......... .......... .......... 568 ATGTTTTCTC AGTATCAACA CTATCAAGCC ATGCATCCTG TACACTTACT AAGATCAGGA 15678 .......... .......... .......... .......... .......... .......... 568 AAAGATGCAA GGAATGGGGC CTGGGGTAGA AAATGTTTGA TGTAAGACTA GCACCTTTAT 15738 .......... .......... .......... .......... .......... .......... 568 CTCATTTTCA TTTAAATATT CAACATAGTT TCCTGATGCA TCAAAATAAC CTTCTTCTCT 15798 .......... .......... .......... .......... .......... .......... 568 CTCTTTATTC AGATTAAAA 15817 | |||| .......... ..AAAAAAA 575 hqPGS_C04HBa0127E11.1+_SGN-U334276+ (14305 14428,14884 15019) ******************************************************************************** EST sequence 6 +strand 1289 n (File: SGN-U313328+) 1 AACACTTCAT TACACATCAA AGACATGGCC AATTGTTCAA GATTTCTCTT ATTGTTATTA 61 CCTCTACTTC TTCACATTCA TAATGTAAAA AGTGAGCTCC AATTAAATTA CTACACAAAG 121 AGTTGCCCAA GAGCTGAAGA TATCATCAAA GAACAAGTGG CAACATTGTA CCACAAACAT 181 GGGAACACAG CAGTTTCTTG GATTAGAAAT CTTTTTCATG ATGGTCTTCT TTGGTTAGGA 241 GGGCCAATAA AAATTGAAAT GAAAACAGGA AGGAAAGATA GCAAGGAAAC TTACTTTTCA 301 GAAGTTGAGA AGTACCTCCC TAATCACAAC GATTCAATCT CATCTGTGCT TTCAAGATTT 361 CAATCAATTG GTGTTGATAC TGAAGGAACT GTTGCTCTAC TTGGTAATCA ACTCTCTAAA 421 CTCTCGTTTA ATCATAAATT TTTTAAAAAT AATTAATTAT ACAAAATTAT GTTTATTTTG 481 ATCGAAAAAT TCATGTAGAG TTCATTCTTA GGGCCCGTTT GGATGGACTT AGCTTTAAAA 541 AAGTACTTTT AAAAGTTATG CATTTGGATA AAAGTGTTGA AGTTGCTATG CCAAACGTGA 601 AAATGGAAAA ATGGAAGAAA GAGATGTTAG AGTTATGTGG ATAATTTGGA GATTGTATAA 661 AAATATTAAG GGCAAAAAGA TAAAAATGTG GTCAACTTAA AACAGCTTAT AAGCTAAAAA 721 AAAAGCACCC CTACCCCAGC TTTTAACTTT TGGCTTAAAA TAAGTTTTTT TTTTTAACTT 781 AAAATAAGTT ATTTTGAGTA TTGCCAAACA ACTAAATAAG TCAAAAATCA GTTTTTAAGT 841 CAGTTTGATC AGCTTTTAAG CTGAACTAAA CAAGCTCTTA GACAATAATT TTTTCTTTTA 901 CGTATCTCCA CTTAAATAGT AGACATTATA AGTTTGAGGC AGTTCTCAAC CATGTAACCT 961 AAGTCACAAA TTTATGAGTT TCCAATTTAT GCACTTTGGT TAAAAAAATA ACTATTCATA 1021 TAAATTTCTT TTTTTATTAT TTTAATCGAA AAAAATCATC TAGAGTCGAT TGTTAGAAAT 1081 AGTTGCAACT TGCAACTATG TAACACAGAG ATAATAATTT TGTCTTTTTA CGTATCTCCA 1141 CTTAAATACC AGACATCACT AACTTAAGTC ACAAACCCCT TGACCTTCCC AATTATATTT 1201 AAGCACTAGA AAACTTATAT ATAAAAAATC GAATTTAACG CTTAATATTT ATCAACTAAC 1261 ACCTAATTGT CTTTTGTTTC ATTTGGAAA Predicted gene structure (within gDNA segment 7574 to 20760): Exon 1 9166 9179 ( 14 n); cDNA 451 463 ( 13 n); score: 0.643 Intron 1 9180 9436 ( 257 n); Pd: 0.843 (s: 0), Pa: 0.991 (s: 0) Exon 2 9437 9442 ( 6 n); cDNA 464 468 ( 5 n); score: 0.500 Intron 2 9443 12023 (2581 n); Pd: 0.000 (s: 0), Pa: 0.994 (s: 0) Exon 3 12024 12042 ( 19 n); cDNA 469 487 ( 19 n); score: 0.632 Intron 3 12043 13545 (1503 n); Pd: 0.000 (s: 0), Pa: 0.894 (s: 0) Exon 4 13546 13559 ( 14 n); cDNA 488 501 ( 14 n); score: 0.714 Intron 4 13560 14302 ( 743 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.58) Exon 5 14303 14352 ( 50 n); cDNA 502 552 ( 51 n); score: 0.590 Intron 5 14353 14390 ( 38 n); Pd: 0.408 (s: 0.60), Pa: 0.000 (s: 0) Exon 6 14391 14428 ( 38 n); cDNA 553 590 ( 38 n); score: 0.789 Intron 6 14429 14883 ( 455 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.88) Exon 7 14884 15165 ( 282 n); cDNA 591 873 ( 283 n); score: 0.888 Intron 7 15166 16224 (1059 n); Pd: 0.889 (s: 0.88), Pa: 0.000 (s: 0) Exon 8 16225 16251 ( 27 n); cDNA 874 898 ( 25 n); score: 0.704 Intron 8 16252 20094 (3843 n); Pd: 0.188 (s: 0), Pa: 0.236 (s: 0) Exon 9 20095 20107 ( 13 n); cDNA 899 910 ( 12 n); score: 0.615 MATCH C04HBa0127E11.1+ SGN-U313328+ 0.843 463 0.359 C PGS_C04HBa0127E11.1+_SGN-U313328+ (9166 9179,9437 9442,12024 12042,13546 13559,14303 14352,14391 14428,14884 15165,16225 16251,20095 20107) Alignment (genomic DNA sequence = upper lines): AATCAGTTCA TAAGGTGAAA ACACTCCTCC TCAAATTCAC AAAGCAATAA AACTAAACCA 9225 ||| | || | || AATTAATT-A TACA...... .......... .......... .......... .......... 463 AAAAAAAAAA AAAGTGTACA TAAATTGAGA TCTCACCACA AAAACTCTCT GAATCAAAAC 9285 .......... .......... .......... .......... .......... .......... 463 AGTACCTCGC CGGAAAGTGA TGAATTCGCT TCGCCGGATA ATAAACAGTT GAGCTATACA 9345 .......... .......... .......... .......... .......... .......... 463 ACCCTAATTT GATTGCTTTG AAAATGAAAA CCAAAAAAAC AATAAAAATA CTTTAAATTG 9405 .......... .......... .......... .......... .......... .......... 463 AATAAGTTAA TGAAATTTTT TAAATATATA GCAGATGATG ACACGTCGAT TTGTGTGGGA 9465 | || .......... .......... .......... .AA-ATT... .......... .......... 468 AAAGGGGGAG AATCAAATTC GTGGACGAGA AAAAACGGTT GAGATGAGAT CTGTTTCTGC 9525 .......... .......... .......... .......... .......... .......... 468 AATCTAATTG GTCCACGTAT GATGAAAACC GACACGTGTC AGTTAATTTA TATGTTTATT 9585 .......... .......... .......... .......... .......... .......... 468 ACCGGTGGCT CAATGTTTAG TGTTAATCCA CCTTTGGGAT TGCGGAGTCC ATTGAAATTT 9645 .......... .......... .......... .......... .......... .......... 468 TTATTTTGAT TTGATATTAA GTTTAAGAAA GTAAAATGAA TTTTTTAAAT TTTATTGCTT 9705 .......... .......... .......... .......... .......... .......... 468 TAAGTTAAAG ATCGTAATGA AAAAATAGAT TATTTTTTTT TAAAACAAAA AAAAAAGTAT 9765 .......... .......... .......... .......... .......... .......... 468 GATTAATAAA TTGAAATGGA AGAAATAATA TTGTATTTTA TGTTTGGTTA TACATAGTTA 9825 .......... .......... .......... .......... .......... .......... 468 ATTAGTTGTA GAATTACTTT ATCTCAATAT TTTTATATAA ACGAGATGAA TTATGTACTT 9885 .......... .......... .......... .......... .......... .......... 468 TATTACTCTT TATCTCAATA TTTTTATATA AACGAGATGA ATTATGTACT TTATTACTTT 9945 .......... .......... .......... .......... .......... .......... 468 TCATCTAGTA AACTAGTACA AAAAAAAATT TGGGAAGAAT TTAATAAAAT TACTAGAAGT 10005 .......... .......... .......... .......... .......... .......... 468 AGGGTAGGCC ACGTAAATTG AATTGTTGAT TGTTAAATAT CAACACTCGG GTAATTTTCA 10065 .......... .......... .......... .......... .......... .......... 468 TAATTAGAAA AAATAATCAT CAAGTATTAC ATTTTTATTA TCAAAAAACT TACACGAATC 10125 .......... .......... .......... .......... .......... .......... 468 CTTTGTTTCT TGTCAATTTT AGAAAGGAAA AATATTCATG AACTATTCGA AAATCGAAAT 10185 .......... .......... .......... .......... .......... .......... 468 AGGTTAACTT AACCCTCTAT CATGTTTTCA ACTTCAAAAT ATCAGACCAA AGAGGTCAAC 10245 .......... .......... .......... .......... .......... .......... 468 GGTTCAAACC GTGAAAACAA CCTCTTGCAG AGATTTTGTA ACGCTACGCA CAATACACCC 10305 .......... .......... .......... .......... .......... .......... 468 TTGTAATTCG TCAACAGAAG TTATAGTGCA CTACACTGCC TTTTCTTTTC AGTCATATCA 10365 .......... .......... .......... .......... .......... .......... 468 CAAATAGAAC TTAAGAAACA AATAGACAAC AATTTTACAG TTCGAGAGGC ACTGAAAACT 10425 .......... .......... .......... .......... .......... .......... 468 AGCAGCATTT TGTAGTCTAT CACCACAAGA TACAAGAAAC AAGTTTTGTC TTCTCAAACG 10485 .......... .......... .......... .......... .......... .......... 468 TGCTATGAAT CCACTGTACA CCTGCTTGTA CGTAAACGAA AAATATATCA TCGCAACCAT 10545 .......... .......... .......... .......... .......... .......... 468 GATGTTTGCA CTGAGCACTG GGCAGAAAGC AAAAAGCATT TCTCAAATAC GCTGTGTTTC 10605 .......... .......... .......... .......... .......... .......... 468 CAAAGGTTGA GATTCAGTAA GTTAGAGAAA TGCAGCAAAG CCGTCAACCT CTGTCAAAGA 10665 .......... .......... .......... .......... .......... .......... 468 AAACTATCAG TAAGTTTGAC AAATGCAGCA AAGCTGTGGA CCTCTGTCAA AGAAAACTAC 10725 .......... .......... .......... .......... .......... .......... 468 CGCCAGGACC ATCACTCCTC TGTATAAGAA CTCGGTCTCT TTCAATTGGC GTCAGATGTA 10785 .......... .......... .......... .......... .......... .......... 468 GCTTGTGGCA CCTCTTGGTA TATGCCCGAT TCATCATTAT ATGAGTACCT ACATTTGATA 10845 .......... .......... .......... .......... .......... .......... 468 CATCAATGAA AAACAGTTAA CAAAAGTACT ATTTGCGACA GTTCAAATCA CACTACTACA 10905 .......... .......... .......... .......... .......... .......... 468 ATTGGGTCCA CACAAATTGC GAGGAACCAA TCGAAAATAG GAAGATCAAT ATCCCGATTT 10965 .......... .......... .......... .......... .......... .......... 468 TGTCCAGTTA AAACAGTTGA GTGTCATTAC CATTGTCCTG ATGATGCATT GCAATACAGT 11025 .......... .......... .......... .......... .......... .......... 468 CCAGATGATG GATCATAATA GTAGCCCAAA CTGCTGCTGT AGTAATAACT GAGACGAAAA 11085 .......... .......... .......... .......... .......... .......... 468 ATACAAAAAG AGTGTAAGAA GTTTAAGACA GAAATACAAA AAGAAATGCC CGACATTAAT 11145 .......... .......... .......... .......... .......... .......... 468 GACTGATTTC AACTTTGGAG GCGCAGTTCG TCAAACAATG GAATTGAAGT TCCTAGACAG 11205 .......... .......... .......... .......... .......... .......... 468 ATAGAACATA TGAACCTTTC ATGTCACTCT CAACATCCCA TATCTGCTCT TATCAAGTCA 11265 .......... .......... .......... .......... .......... .......... 468 ATGTAGAAAG ATTAGACAAG CAGGAAACCC ATGGTTATTT GGTAGTCCCT GCTACTGCTA 11325 .......... .......... .......... .......... .......... .......... 468 AACAAAGGTG GATATCATAT CGAGCAAACA AACTAGCATA CATGAACTTC CAAAATCAGT 11385 .......... .......... .......... .......... .......... .......... 468 ATGTGGGCAG AAACTGACAA TGGAATGGCA ACCCGACAGG AACACTTCTG CCAATATTAG 11445 .......... .......... .......... .......... .......... .......... 468 CTTGAAAAGA ATGTTGAAAG AGTATAAATT GGAACGGAAA ACTCCGAAAG AACTATGTTC 11505 .......... .......... .......... .......... .......... .......... 468 AAATAAATTT CATAGGATCC TCTTCCTTTA GAACTACAAC ATTGGGTGAT TCTTTGATTG 11565 .......... .......... .......... .......... .......... .......... 468 AACAAGGAAG ATCCCTACAA TAATCTGCGC TCCCACTTGA ATCCAGTGGA ATTTCAAAAT 11625 .......... .......... .......... .......... .......... .......... 468 GAGACGGTTT GATTTCTTAT TTACTAGGAT GTCTGCACTC TATGAGCAGG AGGAGAAAAG 11685 .......... .......... .......... .......... .......... .......... 468 TAGTACAATG AGCTAAAAGG TAGAAAACAT ACCCAGAGGA CTCATCAAAG ATATAATCAC 11745 .......... .......... .......... .......... .......... .......... 468 CACTTGAATC CAGTGGAATT TCAAAATGAG ACGGTTTAAT TTCTTATTTA CTAGGATGTC 11805 .......... .......... .......... .......... .......... .......... 468 TGCACACTAT GAGCAGAAGG AGAAAAGTAG TGCGATGAGC TAAAAGGTAG AAAACATACC 11865 .......... .......... .......... .......... .......... .......... 468 CAGAGGACTC ATCAAAGACA TAATCACCAT GCTGATCACC TACAGTTTAC ATTGAGTGGG 11925 .......... .......... .......... .......... .......... .......... 468 AGTCACGTAT GTGGAAAGGG GAATATGCTT AAAAAGAAAC TTTTAATCTT ATCTCACATA 11985 .......... .......... .......... .......... .......... .......... 468 AAATAATGGA CTAAATTTGT CAATAATGTC AATTGTAGAT GTGTTTAGAG ATCAAATTAC 12045 || || | | | ||| || .......... .......... .......... ........AT GTTTATTTTG ATCGAAA... 487 CTCCATTAGG GGCAGGATTA GCTGGAGTAT TTTCATCGTC TTCACCAAAC ATGTCAAATG 12105 .......... .......... .......... .......... .......... .......... 487 CATCATCGCT CTTGCTAGCT GAGTTATATG AATTAGATGA AGCCACATCT GTCTTATGCA 12165 .......... .......... .......... .......... .......... .......... 487 TAGGATGTCC TTCTGCAGTA GCAGTTGACC CACTGGGGAG GAAACCTTCA TCGAGAATAC 12225 .......... .......... .......... .......... .......... .......... 487 TATAGGGCTT AGGCTGCATT GATTCACTGG ATTTACCCTG TCTTGCTTGA GCTAACTTCT 12285 .......... .......... .......... .......... .......... .......... 487 CGTATCCCTC TGGATCAACA CAAAATGCAA ATAAGATAAT ACCGTCACTC ATGCAGCTCA 12345 .......... .......... .......... .......... .......... .......... 487 ACAGAAATGT CAGCGCATGC AAGTGAAAAT TAATTGTTCT TTACTTCAGA ACCCTAGCAT 12405 .......... .......... .......... .......... .......... .......... 487 AAAACTTAAG TCACCAATAT CATCCTTATA GTAGAAAAAA GGCGAAGCCA GTAACCAGGG 12465 .......... .......... .......... .......... .......... .......... 487 GAAATACTAC TTCCTGTTTT TCTGTATATT TCCCCTCCAC GGCCCCCTTC CCCCCCCCCC 12525 .......... .......... .......... .......... .......... .......... 487 CCCCCCCCCC TAAAAAAAAA GAAAGTTTTA ACCAGTTTGG TTAGGGAAAA GACAAGAATG 12585 .......... .......... .......... .......... .......... .......... 487 TAATGGGAAA GAGACAAGAC TGCCATCATA TATTTTCCAC TTCCTTGAGT TGTGGTCATG 12645 .......... .......... .......... .......... .......... .......... 487 GTGGATATAA TGTCAGAGAA AAGAGGGAAT AACACAATGA TAAGTACCTG CTTCCCGCTG 12705 .......... .......... .......... .......... .......... .......... 487 GAAACTCTCT TGCTTTTCTT CATACACATC TGTGAAACAA GAAATAGACT AAAAGATTAG 12765 .......... .......... .......... .......... .......... .......... 487 AACCGTCCTT GGTATTCTAT TCAACTATTA CCTTTCAATA CAGTTATTAT GCAAACACAC 12825 .......... .......... .......... .......... .......... .......... 487 TTAACTGTAA TCTCCATTCT CCATTAGCTT CATAGCATCT TCTGTTAGCT GATCAAACAG 12885 .......... .......... .......... .......... .......... .......... 487 CTGCTTAGTT TCTCCAGACA TTTTGCCCTT GTTATTGTTT GAGGTACCTT TCAATCTCCT 12945 .......... .......... .......... .......... .......... .......... 487 TAAACCTCGC AAAACCTGTT GGAAGTAAGT TCTTCCCATG AGTCCCAAAG CAATAGAGAA 13005 .......... .......... .......... .......... .......... .......... 487 CAACATCAAC TTCATAGCAC AAAGATTCTT GGCAGAAGTA TTCAAACATA ACAAGTGGAT 13065 .......... .......... .......... .......... .......... .......... 487 AACTTTATCG TACAAGGCCT GCCAGGTTCA TATGAGGCAG CTAATACAGG AATAAAAACT 13125 .......... .......... .......... .......... .......... .......... 487 AAATGGTCTA TGGTCTAAAT TAACAATAAT GTCGAGAGAA CTAGCTGCAA AGCAAATCCG 13185 .......... .......... .......... .......... .......... .......... 487 CTGTGAGCAA ATTGCAAATA GGCAGCACGA TTTGTTTGGT TGGAAATGAA GGGACAAAAA 13245 .......... .......... .......... .......... .......... .......... 487 TCAACCAGCT TCTCAGTTAC CATTATCAAA AAAAAAAAAA TCAACCAGCT TCCAGAAATT 13305 .......... .......... .......... .......... .......... .......... 487 ATCAAAAACA AAATGATTGA TCACAGCTCT GATACCCTAA ATGCTAAACA TGGTAATAAA 13365 .......... .......... .......... .......... .......... .......... 487 ACAAAAGAGT GATACATACT GAAAATAAGA GAGAAGGGTA TCCTGGTGTT CTTAAACACC 13425 .......... .......... .......... .......... .......... .......... 487 ACACCAGATT CAGATATTAA CCTTCCAAGC AAATAGGCAA AGCCTTCTCT CAAACAAAAT 13485 .......... .......... .......... .......... .......... .......... 487 CTACTACCGT CTTCCTTTAA TTGAATAGCA TGTACCCTCA AAGCAACCTA TGTTTAACAG 13545 .......... .......... .......... .......... .......... .......... 487 ATTTTTTGTA GAGAATAGAG AGAGTGACCT GCCAGCACCC CCAATGGACT GGATGCCAGA 13605 | || |||| ||| AATTCATGTA GAGT...... .......... .......... .......... .......... 501 TGACACACCT CTGCCGTGCA GGCATCAGGA ACTTTTGGGT GAAGGCCTTA CACTTGAATA 13665 .......... .......... .......... .......... .......... .......... 501 TCCTGATTGA CAAGGATAGA TGACCAAGGG AGGGAAGGGG AAAAGAATAA ATGGTGTGGT 13725 .......... .......... .......... .......... .......... .......... 501 TTACCAGTAT GCTGGTCTGA TGCAAAGCAT CTTATCATTA ACTTATTCAT ATTTGGAGAG 13785 .......... .......... .......... .......... .......... .......... 501 AGGAAAGCTG TCAGAGGAAG CAAGCAAGTA ACTGACTGAG CAATACAGCA AACAATATGT 13845 .......... .......... .......... .......... .......... .......... 501 TAAATTTACT TGTTATTGAA TGGATGGCTG TGTTTAGAGG AAGTATTTGT AGTGGAAATA 13905 .......... .......... .......... .......... .......... .......... 501 AGTGGAGTTG TCAAAATATC AGATGCAAAG TTGATGGTGC CAATGTCTAA CTACCATGAT 13965 .......... .......... .......... .......... .......... .......... 501 GAAATTTAAT GATGAACATA GCTCCTACAG GGTGCGCAAA ATTTTCGAAA GGATGTGCTG 14025 .......... .......... .......... .......... .......... .......... 501 TTCTGACGGG TACCAAAAGT TCTCCTTCAG AAAAGCCAAT GAGGTATTTA TTATATTGCG 14085 .......... .......... .......... .......... .......... .......... 501 GTGATTCTAA AGTTTTAACC TACATATTTC TGGAATTGGC TTTAACATGC ACAAGTGCAC 14145 .......... .......... .......... .......... .......... .......... 501 ACGACTGTTA AATTCAAATA TTAAATGCCT TGGGAATGAG CCCCCATAAA ATCCACCTAG 14205 .......... .......... .......... .......... .......... .......... 501 TTCTTTTTTA ACTACTCCAA TTCTAATATG ATTCAAGAAA CATGCCTTGA CTCATTCATT 14265 .......... .......... .......... .......... .......... .......... 501 TGTGTTCAAC CAAAATTTGA CAAAAAGTTG TGAAATAACA ATGTAAGGGC CCGTTTGGAT 14325 || | | ||||| |||||||||| .......... .......... .......... .......TCA TTCTTAGGGC CCGTTTGGAT 524 GGGCTTA-AT AAAAGCAGCT TTAAAAAAGT ACTTTTGAAA GTGCTGAAAC TTATTTTTAA 14384 || |||| | || | | || GGACTTAGCT TTAAAAAAGT ACTTTTAA.. .......... .......... .......... 552 AATAAGCAGT TATGCGTTTG GATAAAAGTG ATGAAGTTAA AAAAGCTTGA TGTGTTTGGC 14444 ||| ||||| |||| |||||||||| ||||||| | ......AAGT TATGCATTTG GATAAAAGTG TTGAAGTTGC TATG...... .......... 590 AAATAAGTGC TGATAAACAC CTTTTTAAAT CAAAATGTCT TAAATGCTCT TAAAAGCTGT 14504 .......... .......... .......... .......... .......... .......... 590 TAACATAATA AAAGTTAATT TATTTATATT TTACAGCCAT AAATAATTAT ATTTTGCTAT 14564 .......... .......... .......... .......... .......... .......... 590 CATTCACATA TTTCTTTCTC ATCACAAATT ATTTATAAGA GGAATATAAA CTTATTATAG 14624 .......... .......... .......... .......... .......... .......... 590 ATTTAAAAGA TATATAATTT GAATAGATTA AAGAACGATT TAAGATTTTA TTTTAGTTTC 14684 .......... .......... .......... .......... .......... .......... 590 ATCCATAGGT AATAATAATT GTCTATCATT CACATATTTC TTTATTATCA CAAATTATTT 14744 .......... .......... .......... .......... .......... .......... 590 ATAAGAGGAA TATAATTTTT TATTTAAGTT ATATGTGCAA CTTATTTTAC ATTTAAATAA 14804 .......... .......... .......... .......... .......... .......... 590 TATATAATTT GAATAGATCA CTTGAAAGAT TTAAGATTTA TTTTATTTTC ATTCATTAGT 14864 .......... .......... .......... .......... .......... .......... 590 AATAGTAATT GTCTATCATC CACACGTGAA AAGGAAAAAA TAGAAGAAAG AGATGTTAGG 14924 | || ||||||| || | ||||| | |||||||| ||||||||| .......... .........C CAAACGTGAA AATGGAAAAA TGGAAGAAAG AGATGTTAGA 631 ATTATGTGGG TAATTTGAAG ATTGTATAAA AATATTAAGG GCAAACAGGT AAAAATGTGG 14984 |||||||| ||||||| || |||||||||| |||||||||| ||||| || | |||||||||| GTTATGTGGA TAATTTGGAG ATTGTATAAA AATATTAAGG GCAAAAAGAT AAAAATGTGG 691 TCAACTTAAA ACAGCTTATA AGCTGGGGAA AAAAAGCACC CCTACCCCAG CTTTTAACTT 15044 |||||||||| |||||||||| |||| || |||||||||| |||||||||| |||||||||| TCAACTTAAA ACAGCTTATA AGCT--AAAA AAAAAGCACC CCTACCCCAG CTTTTAACTT 749 TTGACTTAAA ATAAG---TT TTTTTTAACT TAAAATAAGT TGTTTTGAGT ATTGTCAAAC 15101 ||| |||||| ||||| || |||||||||| |||||||||| | |||||||| |||| ||||| TTGGCTTAAA ATAAGTTTTT TTTTTTAACT TAAAATAAGT TATTTTGAGT ATTGCCAAAC 809 AGCTAAATAA GTCAAAAACC AGCTTTTAAG TCAGTTTGAC CAGCTTTTAA GCTGAGCCAA 15161 | |||||||| |||||||| | || ||||||| ||||||||| |||||||||| ||||| | || AACTAAATAA GTCAAAAATC AGTTTTTAAG TCAGTTTGAT CAGCTTTTAA GCTGAACTAA 869 ACAGGCTCTA AATCTTAACA GCTCAACCAT AGCCTCTCCA TTTCTCATTT GAAAACAACA 15221 ||| ACAA...... .......... .......... .......... .......... .......... 873 GCAAAAAGCC ACAAAGAACT TTGCTTGGAC AATGAAGAAA ATATAATATG CAAGCAACAG 15281 .......... .......... .......... .......... .......... .......... 873 CAAACACAGT ATCAATATGC AACCATTAGT ACGAGATAAT ACATGAGGGA AAAGCAGATA 15341 .......... .......... .......... .......... .......... .......... 873 AGATTCATGT TGAAACCACC ACTGAAGGAA CCAGAAATGA GAGCACATAA AATATTTAGA 15401 .......... .......... .......... .......... .......... .......... 873 AGATATTAAA AAAAATCTAC AAGCAAATGC CATCAACAGT ATTTATCCAT TAAAAAAAAT 15461 .......... .......... .......... .......... .......... .......... 873 TAACAAAAAA AAACTAGAAA ACACGAGGTG GGAATAGTTA CTGTTTCTCC TGGTTCGAGC 15521 .......... .......... .......... .......... .......... .......... 873 ACATCAGCAA TTCGCCTCTT CATCTTTCCT AGTTGTTCTG ATGTAAGGTC TTGAATCTCA 15581 .......... .......... .......... .......... .......... .......... 873 TCTTCATTTG ATATCTTGAT AGCTTTCTTC CCAGAATATG TTTTCTCAGT ATCAACACTA 15641 .......... .......... .......... .......... .......... .......... 873 TCAAGCCATG CATCCTGTAC ACTTACTAAG ATCAGGAAAA GATGCAAGGA ATGGGGCCTG 15701 .......... .......... .......... .......... .......... .......... 873 GGGTAGAAAA TGTTTGATGT AAGACTAGCA CCTTTATCTC ATTTTCATTT AAATATTCAA 15761 .......... .......... .......... .......... .......... .......... 873 CATAGTTTCC TGATGCATCA AAATAACCTT CTTCTCTCTC TTTATTCAGA TTAAAAGGTT 15821 .......... .......... .......... .......... .......... .......... 873 CTATTGCAAT CCCATCATCA ATGAATGTTT CATTTTCCTG CAACCAGAGA TATTCCATTA 15881 .......... .......... .......... .......... .......... .......... 873 GTTACACCAG AAAGGAATAC AAGAAATACA AAGTTTAGCC ATAGAGCAAT TAGAATATGC 15941 .......... .......... .......... .......... .......... .......... 873 AAAATTTGAC ATTAATGATA ATTCCAAGTA CTTCAGTTTG TTTATAGGCT GGAGAGCCGA 16001 .......... .......... .......... .......... .......... .......... 873 ACCAAAGAAC AAATAACAAT ATAATTCCAC GAATTTAATG TGACAGCACA TGAAGCAGAA 16061 .......... .......... .......... .......... .......... .......... 873 ATAATGAAAT TTAATTAACA TTTATGTTTT GAGAGTTTAA GTAAAAGAAA TAAAATGCTC 16121 .......... .......... .......... .......... .......... .......... 873 GGAAAATAAA ACAGAAGGAA ACAAAGGAAG TAAAGCTACA AATTTTATTT CCATTGTTTC 16181 .......... .......... .......... .......... .......... .......... 873 ATTGGCGAGG GAATTATGAA GAACAGGAAA AATTTATTCA AGGGAACTCA GATAAATTCT 16241 | || | || ||| | .......... .......... .......... .......... ...GCTCTTA GA-CAATAAT 889 TTTCTTCTTT GTAATCCTAT TCTCATCTCT ATGCAAATTA AAGTACGTGC AGAATTTAAA 16301 ||| |||||| TTT-TTCTTT .......... .......... .......... .......... .......... 898 TCTTACCCAT TTTCTATTTG TAAAGTTCAA AAACCCACAG TTCATAAAGT CCAAGGAAGA 16361 .......... .......... .......... .......... .......... .......... 898 ACTCTACATA AGATAGAATG AGACAAGCCT ATTGGACACA GAAACAACGA TTCATGCTCA 16421 .......... .......... .......... .......... .......... .......... 898 GTGAATTTAA AAGTGAAAAG TGCAAAAAAA GCGTCTGCGA GGCTTGAAAT GAATAGGAGA 16481 .......... .......... .......... .......... .......... .......... 898 GAAGTAAGGC ACATGCTTTA TTAAGTGAAG CGCACAATTA TTTGATGATG ATTCCTTTAC 16541 .......... .......... .......... .......... .......... .......... 898 ACATGGCATG CAACCTTATG CTATTCCTTT TGATGAGCCG CTATATGCTA AGAAAAAACA 16601 .......... .......... .......... .......... .......... .......... 898 CCATTCTGTC TCCTTGACCT TTGTTTCAAG AGCATAAGGA TTGATATGTA TTAGTGGGGT 16661 .......... .......... .......... .......... .......... .......... 898 TTTTAAAATG AAGTTACAGA TGGTCCCTAT TTTGCTTACG TTACTACTTA CTACTTGGGG 16721 .......... .......... .......... .......... .......... .......... 898 AATATAATTA GCAATCATGA TTATTTATGG TTTTCAATTG TGCATGAGTA CCCATATCTC 16781 .......... .......... .......... .......... .......... .......... 898 AGCTCTTTTA AAGAAGATTA CCCATATCTA AGTTGTTCTA GCTAAACACG CAGCACAAAT 16841 .......... .......... .......... .......... .......... .......... 898 CATGCCAAGC CCCAAAAAAG TTTGTAATAA TCCTAGTATC ACTTCCTTAT CAAGAGATAT 16901 .......... .......... .......... .......... .......... .......... 898 GAAGTAGACA TCAGATATCC ACAAAGTACC TAACTACAAT CAAACAATTA TGGAATAACA 16961 .......... .......... .......... .......... .......... .......... 898 GATATTGGAA GGACAAACCT CATATTCCAC TTCTGCCCGC GATATGTCAG CTATTTCACC 17021 .......... .......... .......... .......... .......... .......... 898 TTCGTTTTCT TCATCAAGGA GTTCCGCTGT TATTTGATTC CGCCGTGCCG AACGCTCTTT 17081 .......... .......... .......... .......... .......... .......... 898 GGCTGCATTG CGAGGATCTG TCCGCCCACT AGGTTTATCT TCACACCCAT CAATCGTGGT 17141 .......... .......... .......... .......... .......... .......... 898 ATCGCCCTGC TTTGCCTTCT TACCCTTTGG GAACCTTACA CGCTTCTGCC TGTGATGTTG 17201 .......... .......... .......... .......... .......... .......... 898 AGGAAGAAAG CAACATGTCA ATGCAAACAT CCTTAAAATC CAGCATCATA AATGAAACTA 17261 .......... .......... .......... .......... .......... .......... 898 TTTTGAACCC AACAAATGAG GTTGTCATAG AGCATGGCAG ACGTCACATG GAAAAAAAAA 17321 .......... .......... .......... .......... .......... .......... 898 ACGCTATTTG AAGTTGTATT ACTTGCTATT GCTGTCTCAT GAAACACATT ATCTTTACAA 17381 .......... .......... .......... .......... .......... .......... 898 GGAAAATAAC AGTAGGTAAA AAAGATCTAT TTTTTCTCGT ACTAAACTCA TGACAGTCTC 17441 .......... .......... .......... .......... .......... .......... 898 AACAACAAAA TACAACCTCT AATCTGAAAA AGAAAGCAGT CTACTTTATC TTCAAAGACA 17501 .......... .......... .......... .......... .......... .......... 898 AACTATTGAG CACTGGAATG AAATGATCAC AGTTAGAGTA AATAGATATA GAGATTACAT 17561 .......... .......... .......... .......... .......... .......... 898 ATAACTAATC CAATTAGTTT GGGCATGAGG CATAGTCACT GTATAATTCC TTAAATCTCC 17621 .......... .......... .......... .......... .......... .......... 898 AACAAATAAA GTATTTTCTT GCATAGTTCT CTCAAGGCCA AACACACCCT TCTTTATTAG 17681 .......... .......... .......... .......... .......... .......... 898 ACATTTTCTA GGTACTAAGA ATACACAATC CACCCATTCC CACTAGATTT TTGCTCCAGG 17741 .......... .......... .......... .......... .......... .......... 898 TTCACATCAT ATATGAAATC AACGGTAATT CAGATTAGGA AAAAACAAGC TAATAGAATC 17801 .......... .......... .......... .......... .......... .......... 898 TGGGCGCATT TGCAGAATAA CAAAAATAGA TAGCAGCTGA AAGAAAGCAA ATCCAAGTAC 17861 .......... .......... .......... .......... .......... .......... 898 ATACTCCTGA ACTCCTCTGG GAAGCTCCTA AAATTCTTAC AATAATGACA TAATAAATCA 17921 .......... .......... .......... .......... .......... .......... 898 ATCCCAGCAG AAGCAAAAAA TACTATGTGT ATTCTCCCTA TCTATTTAAG CCTCAATTGA 17981 .......... .......... .......... .......... .......... .......... 898 CACAGTAAAG TGATATCTAT GTGGATGGGA GGTAGTAGAG ATCCCATAGG ATAGAATTAA 18041 .......... .......... .......... .......... .......... .......... 898 TTGAGTTATA AAAACAAAAA TGAGCTTCCT TACTTATTTA TCTATTTTTA TCTTTCTATT 18101 .......... .......... .......... .......... .......... .......... 898 GATACAAAAT ACTCCCCCTA GTTCACTTCT TTCGTTTTTT AGACAACTGT AGTTACTAGA 18161 .......... .......... .......... .......... .......... .......... 898 CCAGCTTATG CGCACCTTAA CTAATTACAT AGATATCTGT CGCTCCCCAC CAAAACAGCT 18221 .......... .......... .......... .......... .......... .......... 898 ATAAAGTAAC TCTATCCTCA AGGCTAGGAC AGGTAGAAAG AAATCACTTT TCTTCTCTAT 18281 .......... .......... .......... .......... .......... .......... 898 GTTGGAATTT GAACCTTAGA CCTCATGGTT CTCAACTCAC TTCATTAACC ACTAGATCAC 18341 .......... .......... .......... .......... .......... .......... 898 ACCCTTCCTT ATTCACTTTT TTATGAAATC AATGTCATTA AATTTCAATG GTAAAATAAA 18401 .......... .......... .......... .......... .......... .......... 898 TTGGTTTCCT TTCGCATTAT GTTTTTATTA TGATTGTGGT GTTCACGCCA GTTTTCCCAC 18461 .......... .......... .......... .......... .......... .......... 898 ACCTCAACTA ATTCCACCTC TCACCATTAA CAACTATCAG GTAACTCTGT CCACCAAAAC 18521 .......... .......... .......... .......... .......... .......... 898 TAGGACAAAT AGAAAAAAAT CATCTAGCAT TTTTGTCTCT ACTAGAAATT GAACATTAGA 18581 .......... .......... .......... .......... .......... .......... 898 CCTCATGATG CTCAACCCAC CTCCCTTGAC CACTAAGCCA CACCCTTTGA GAAGTTTTTT 18641 .......... .......... .......... .......... .......... .......... 898 GTTAATTTTA ATGACCTTGG TATCCAAATA CATTGGATAC GTCCCACCTC CCACCAAATA 18701 .......... .......... .......... .......... .......... .......... 898 ACTTTGTTGT CTTCCCTGAG TTTTATAAGA CCTCAGAATT CTCAACCACT TCATTAATCA 18761 .......... .......... .......... .......... .......... .......... 898 CTAAGCCACA CCCTTGGGGT TTCACCACTA TGTTTCAAAC ATATACAAAA TATTATTTAC 18821 .......... .......... .......... .......... .......... .......... 898 TAAGAAATCA CAAACTTACA GCTCAAATTT TATATTCCGA AATCAATATA ACAAATGAAT 18881 .......... .......... .......... .......... .......... .......... 898 ATGAGCTTTC ATCTGTGCAG AATCCCTAAG TATGTTCAGA ATAAATTAGG GCACAAAATC 18941 .......... .......... .......... .......... .......... .......... 898 ACATGAAATT TTTCAAAAAT AAAAAATAAA AAGAAAGAAG GAAGGAAATA GTTACTCTGG 19001 .......... .......... .......... .......... .......... .......... 898 AGCTTTATTG GAGTCATCGT CCTCAACGAA GGGACGTTTG GCACGTCGCG ATGAACCTTC 19061 .......... .......... .......... .......... .......... .......... 898 TTCCATGGCG TAATCGGCAA TTGATATGAA GGATTCAGAA AGGAAAAAAA ATGAAGGGGC 19121 .......... .......... .......... .......... .......... .......... 898 AAAGTGAAGA GAGAGCGGTG GTACTGGTAA ACATCAAAAA AAATAATAAT AATAAATTCT 19181 .......... .......... .......... .......... .......... .......... 898 ATCTTACAAA CTATAATACC TTTTTTAAAT TGATAAATAT CTAAAATTAA CATTACCAAT 19241 .......... .......... .......... .......... .......... .......... 898 ATTAATCTTA TTGGATAAAT TCAAATAAGT TATTGATAAT ATAGAAAAAT AATATTATAA 19301 .......... .......... .......... .......... .......... .......... 898 ATTATTAGTT GAGAAATGTG ACAACACAAA AAATATACTA ATAGCTGAGA TAATTTGTAA 19361 .......... .......... .......... .......... .......... .......... 898 AATAAAATTA TCATTTTACT TTATTATGGA TATTCATGTC TACTAGTCAT TTTTATCATT 19421 .......... .......... .......... .......... .......... .......... 898 AATTAATATT TAGGATGATG ATTATTATTA TTATTATTAT ATATATATAT ATATATATAT 19481 .......... .......... .......... .......... .......... .......... 898 ATATATATAT ATAAAAGAGA TAAAAATGTA AGATCAAATT GTTTCATAAA TATATAGAAT 19541 .......... .......... .......... .......... .......... .......... 898 AAATTACAAT TTACAAATAT TAATATTTTT TTAATTTAAT CACTCTGTCA CAGTTTTGCA 19601 .......... .......... .......... .......... .......... .......... 898 TAGATAAAAA TGATCGATAA ATTATTTCGT TCGACATTTG CACAAGGATT TTACTTTTAT 19661 .......... .......... .......... .......... .......... .......... 898 AAAAATGATA TTTCAAAAAA ATTGTATAAC TAATTATTTT CATAAATAAA TTACTTATGT 19721 .......... .......... .......... .......... .......... .......... 898 TGAATAGTTT AATTTGGTTA TTAGTTCACT AACTCCTTGT TATAAAGATA CAATTTATTT 19781 .......... .......... .......... .......... .......... .......... 898 CATTTTAATG GTATTATTGA ATAAGTAGTA TTATAGGATT GTTTTGGTAT TTCAATTTTT 19841 .......... .......... .......... .......... .......... .......... 898 ATTTTTTTTT TGTTTAACTC AATATTATAG GATTATTTGG TATTTCAAAT ATAATTTTTT 19901 .......... .......... .......... .......... .......... .......... 898 GTTTAAGTCA ATATTCAAAT TTTGTGTATA AAAAGTACAT AAATTTGGTA TAAAATATGT 19961 .......... .......... .......... .......... .......... .......... 898 ATATAACTAT ATAAAATTTG TATGAAGCTC ATGTTAGATA CTATTGCATA CAACATTCAT 20021 .......... .......... .......... .......... .......... .......... 898 ATCAAACTAA ATACAACTAC AATACCAACA AATGATATGT TGCAGTAGAT GAGTTACTCC 20081 .......... .......... .......... .......... .......... .......... 898 TGTCGGGTTT CAGATTCGAA TCATCA 20107 | || | || || .......... ...-TACGTA TCTCCA 910 hqPGS_C04HBa0127E11.1+_SGN-U313328+ (14391 14428,14884 15165,16225 16251) ******************************************************************************** EST sequence 22 -strand 661 n (File: SGN-U313322-) 1 TTATGCGTTT GGATAAAAGT GTTGAAGTTG TTATGCCAAA CGTGAAAAGG GAAAAATAGA 61 AGAAAGAGAA GTTAGTGTTA TATGGGTAAT TTGGAGATTG TATAAAAATA TTAAGGGAAA 121 AAACATAAAA ATATGGTCAA CTTAAAACAG CTTATAAGCT AAAAAAAAAA AGCACACTTT 181 TGGCTTAAAA TAAGTTTTTT TAACTTAAAA TAAGCTATTT TGAGTATTGC CAAACATTTA 241 AATAAGTCAA AAACCAGCTT TTAAGTCAGT TTGACCAGCT TTTAAGCTGA GCCAAACAGG 301 CTCTAAAGCT CGAGATAGTG AAACTCTAAG ATGATCAATT AAGGAACTGG TGTTGGTTGT 361 TTTTAGTAGA TCTCTTACTT GTTCAAATGC AGGCATGAGG AAGAGGAGTC CAGTTTGAAA 421 GTAGTCAATT TGAAGCTCAA GAATGTCCCA TGGTGTCAAC TCAATAATCT TACAATTATC 481 TGTATGGTGC TGACTTTTTC CCTCAGCTTT AACCGTCCAT TTTGAAATGA TGGATACCTT 541 GGAAGCCATA GCTTTCAATC ACCTCTGTAT TGGGTAAATC TGAAGTTAAA TCAGTGTGCT 601 CAGCGGCGGA ACAGCTTAAT AACCGGAAAA GTTGCCGGAA ACGGGACTTG AACTGGTAAC 661 C Predicted gene structure (within gDNA segment 13393 to 19913): Exon 1 14394 14428 ( 35 n); cDNA 1 35 ( 35 n); score: 0.829 Intron 1 14429 14883 ( 455 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.88) Exon 2 14884 15173 ( 290 n); cDNA 36 307 ( 272 n); score: 0.866 Intron 2 15174 15988 ( 815 n); Pd: 0.000 (s: 1.00), Pa: 0.979 (s: 0) Exon 3 15989 15995 ( 7 n); cDNA 308 314 ( 7 n); score: 0.857 Intron 3 15996 16962 ( 967 n); Pd: 0.000 (s: 0), Pa: 0.950 (s: 0) Exon 4 16963 16968 ( 6 n); cDNA 315 320 ( 6 n); score: 0.833 Intron 4 16969 18901 (1933 n); Pd: 0.000 (s: 0), Pa: 0.914 (s: 0) Exon 5 18902 18925 ( 24 n); cDNA 321 342 ( 22 n); score: 0.750 MATCH C04HBa0127E11.1+ SGN-U313322- 0.866 362 0.548 C PGS_C04HBa0127E11.1+_SGN-U313322- (14394 14428,14884 15173,15989 15995,16963 16968,18902 18925) Alignment (genomic DNA sequence = upper lines): TTATGCGTTT GGATAAAAGT GATGAAGTTA AAAAAGCTTG ATGTGTTTGG CAAATAAGTG 14453 |||||||||| |||||||||| | ||||||| | TTATGCGTTT GGATAAAAGT GTTGAAGTTG TTATG..... .......... .......... 35 CTGATAAACA CCTTTTTAAA TCAAAATGTC TTAAATGCTC TTAAAAGCTG TTAACATAAT 14513 .......... .......... .......... .......... .......... .......... 35 AAAAGTTAAT TTATTTATAT TTTACAGCCA TAAATAATTA TATTTTGCTA TCATTCACAT 14573 .......... .......... .......... .......... .......... .......... 35 ATTTCTTTCT CATCACAAAT TATTTATAAG AGGAATATAA ACTTATTATA GATTTAAAAG 14633 .......... .......... .......... .......... .......... .......... 35 ATATATAATT TGAATAGATT AAAGAACGAT TTAAGATTTT ATTTTAGTTT CATCCATAGG 14693 .......... .......... .......... .......... .......... .......... 35 TAATAATAAT TGTCTATCAT TCACATATTT CTTTATTATC ACAAATTATT TATAAGAGGA 14753 .......... .......... .......... .......... .......... .......... 35 ATATAATTTT TTATTTAAGT TATATGTGCA ACTTATTTTA CATTTAAATA ATATATAATT 14813 .......... .......... .......... .......... .......... .......... 35 TGAATAGATC ACTTGAAAGA TTTAAGATTT ATTTTATTTT CATTCATTAG TAATAGTAAT 14873 .......... .......... .......... .......... .......... .......... 35 TGTCTATCAT CCACACGTGA AAAGGAAAAA ATAGAAGAAA GAGATGTTAG GATTATGTGG 14933 ||| |||||| ||||| |||| |||||||||| |||| ||||| |||| ||| .......... CCAAACGTGA AAAGGGAAAA ATAGAAGAAA GAGAAGTTAG TGTTATATGG 85 GTAATTTGAA GATTGTATAA AAATATTAAG GGCAAACAGG TAAAAATGTG GTCAACTTAA 14993 |||||||| | |||||||||| |||||||||| || ||| | ||||||| || |||||||||| GTAATTTGGA GATTGTATAA AAATATTAAG GGAAAAAACA TAAAAATATG GTCAACTTAA 145 AACAGCTTAT AAGCTGGGGA AAAAAAGCAC CCCTACCCCA GCTTTTAACT TTTGACTTAA 15053 |||||||||| ||||| | |||||| | | | || ||| |||| ||||| AACAGCTTAT AAGCT----A AAAAAA--A- ----A---AA GC---ACACT TTTGGCTTAA 188 AATAAGTTTT TTTTAACTTA AAATAAGTTG TTTTGAGTAT TGTCAAACAG CTAAATAAGT 15113 |||||| ||| |||||||||| ||||||| | |||||||||| || |||||| ||||||||| AATAAG-TTT TTTTAACTTA AAATAAGCTA TTTTGAGTAT TGCCAAACAT TTAAATAAGT 247 CAAAAACCAG CTTTTAAGTC AGTTTGACCA GCTTTTAAGC TGAGCCAAAC AGGCTCTAAA 15173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAACCAG CTTTTAAGTC AGTTTGACCA GCTTTTAAGC TGAGCCAAAC AGGCTCTAAA 307 TCTTAACAGC TCAACCATAG CCTCTCCATT TCTCATTTGA AAACAACAGC AAAAAGCCAC 15233 .......... .......... .......... .......... .......... .......... 307 AAAGAACTTT GCTTGGACAA TGAAGAAAAT ATAATATGCA AGCAACAGCA AACACAGTAT 15293 .......... .......... .......... .......... .......... .......... 307 CAATATGCAA CCATTAGTAC GAGATAATAC ATGAGGGAAA AGCAGATAAG ATTCATGTTG 15353 .......... .......... .......... .......... .......... .......... 307 AAACCACCAC TGAAGGAACC AGAAATGAGA GCACATAAAA TATTTAGAAG ATATTAAAAA 15413 .......... .......... .......... .......... .......... .......... 307 AAATCTACAA GCAAATGCCA TCAACAGTAT TTATCCATTA AAAAAAATTA ACAAAAAAAA 15473 .......... .......... .......... .......... .......... .......... 307 ACTAGAAAAC ACGAGGTGGG AATAGTTACT GTTTCTCCTG GTTCGAGCAC ATCAGCAATT 15533 .......... .......... .......... .......... .......... .......... 307 CGCCTCTTCA TCTTTCCTAG TTGTTCTGAT GTAAGGTCTT GAATCTCATC TTCATTTGAT 15593 .......... .......... .......... .......... .......... .......... 307 ATCTTGATAG CTTTCTTCCC AGAATATGTT TTCTCAGTAT CAACACTATC AAGCCATGCA 15653 .......... .......... .......... .......... .......... .......... 307 TCCTGTACAC TTACTAAGAT CAGGAAAAGA TGCAAGGAAT GGGGCCTGGG GTAGAAAATG 15713 .......... .......... .......... .......... .......... .......... 307 TTTGATGTAA GACTAGCACC TTTATCTCAT TTTCATTTAA ATATTCAACA TAGTTTCCTG 15773 .......... .......... .......... .......... .......... .......... 307 ATGCATCAAA ATAACCTTCT TCTCTCTCTT TATTCAGATT AAAAGGTTCT ATTGCAATCC 15833 .......... .......... .......... .......... .......... .......... 307 CATCATCAAT GAATGTTTCA TTTTCCTGCA ACCAGAGATA TTCCATTAGT TACACCAGAA 15893 .......... .......... .......... .......... .......... .......... 307 AGGAATACAA GAAATACAAA GTTTAGCCAT AGAGCAATTA GAATATGCAA AATTTGACAT 15953 .......... .......... .......... .......... .......... .......... 307 TAATGATAAT TCCAAGTACT TCAGTTTGTT TATAGGCTGG AGAGCCGAAC CAAAGAACAA 16013 ||| | || .......... .......... .......... .....GCTCG AG........ .......... 314 ATAACAATAT AATTCCACGA ATTTAATGTG ACAGCACATG AAGCAGAAAT AATGAAATTT 16073 .......... .......... .......... .......... .......... .......... 314 AATTAACATT TATGTTTTGA GAGTTTAAGT AAAAGAAATA AAATGCTCGG AAAATAAAAC 16133 .......... .......... .......... .......... .......... .......... 314 AGAAGGAAAC AAAGGAAGTA AAGCTACAAA TTTTATTTCC ATTGTTTCAT TGGCGAGGGA 16193 .......... .......... .......... .......... .......... .......... 314 ATTATGAAGA ACAGGAAAAA TTTATTCAAG GGAACTCAGA TAAATTCTTT TCTTCTTTGT 16253 .......... .......... .......... .......... .......... .......... 314 AATCCTATTC TCATCTCTAT GCAAATTAAA GTACGTGCAG AATTTAAATC TTACCCATTT 16313 .......... .......... .......... .......... .......... .......... 314 TCTATTTGTA AAGTTCAAAA ACCCACAGTT CATAAAGTCC AAGGAAGAAC TCTACATAAG 16373 .......... .......... .......... .......... .......... .......... 314 ATAGAATGAG ACAAGCCTAT TGGACACAGA AACAACGATT CATGCTCAGT GAATTTAAAA 16433 .......... .......... .......... .......... .......... .......... 314 GTGAAAAGTG CAAAAAAAGC GTCTGCGAGG CTTGAAATGA ATAGGAGAGA AGTAAGGCAC 16493 .......... .......... .......... .......... .......... .......... 314 ATGCTTTATT AAGTGAAGCG CACAATTATT TGATGATGAT TCCTTTACAC ATGGCATGCA 16553 .......... .......... .......... .......... .......... .......... 314 ACCTTATGCT ATTCCTTTTG ATGAGCCGCT ATATGCTAAG AAAAAACACC ATTCTGTCTC 16613 .......... .......... .......... .......... .......... .......... 314 CTTGACCTTT GTTTCAAGAG CATAAGGATT GATATGTATT AGTGGGGTTT TTAAAATGAA 16673 .......... .......... .......... .......... .......... .......... 314 GTTACAGATG GTCCCTATTT TGCTTACGTT ACTACTTACT ACTTGGGGAA TATAATTAGC 16733 .......... .......... .......... .......... .......... .......... 314 AATCATGATT ATTTATGGTT TTCAATTGTG CATGAGTACC CATATCTCAG CTCTTTTAAA 16793 .......... .......... .......... .......... .......... .......... 314 GAAGATTACC CATATCTAAG TTGTTCTAGC TAAACACGCA GCACAAATCA TGCCAAGCCC 16853 .......... .......... .......... .......... .......... .......... 314 CAAAAAAGTT TGTAATAATC CTAGTATCAC TTCCTTATCA AGAGATATGA AGTAGACATC 16913 .......... .......... .......... .......... .......... .......... 314 AGATATCCAC AAAGTACCTA ACTACAATCA AACAATTATG GAATAACAGA TATTGGAAGG 16973 | || || .......... .......... .......... .......... .........A TAGTG..... 320 ACAAACCTCA TATTCCACTT CTGCCCGCGA TATGTCAGCT ATTTCACCTT CGTTTTCTTC 17033 .......... .......... .......... .......... .......... .......... 320 ATCAAGGAGT TCCGCTGTTA TTTGATTCCG CCGTGCCGAA CGCTCTTTGG CTGCATTGCG 17093 .......... .......... .......... .......... .......... .......... 320 AGGATCTGTC CGCCCACTAG GTTTATCTTC ACACCCATCA ATCGTGGTAT CGCCCTGCTT 17153 .......... .......... .......... .......... .......... .......... 320 TGCCTTCTTA CCCTTTGGGA ACCTTACACG CTTCTGCCTG TGATGTTGAG GAAGAAAGCA 17213 .......... .......... .......... .......... .......... .......... 320 ACATGTCAAT GCAAACATCC TTAAAATCCA GCATCATAAA TGAAACTATT TTGAACCCAA 17273 .......... .......... .......... .......... .......... .......... 320 CAAATGAGGT TGTCATAGAG CATGGCAGAC GTCACATGGA AAAAAAAAAC GCTATTTGAA 17333 .......... .......... .......... .......... .......... .......... 320 GTTGTATTAC TTGCTATTGC TGTCTCATGA AACACATTAT CTTTACAAGG AAAATAACAG 17393 .......... .......... .......... .......... .......... .......... 320 TAGGTAAAAA AGATCTATTT TTTCTCGTAC TAAACTCATG ACAGTCTCAA CAACAAAATA 17453 .......... .......... .......... .......... .......... .......... 320 CAACCTCTAA TCTGAAAAAG AAAGCAGTCT ACTTTATCTT CAAAGACAAA CTATTGAGCA 17513 .......... .......... .......... .......... .......... .......... 320 CTGGAATGAA ATGATCACAG TTAGAGTAAA TAGATATAGA GATTACATAT AACTAATCCA 17573 .......... .......... .......... .......... .......... .......... 320 ATTAGTTTGG GCATGAGGCA TAGTCACTGT ATAATTCCTT AAATCTCCAA CAAATAAAGT 17633 .......... .......... .......... .......... .......... .......... 320 ATTTTCTTGC ATAGTTCTCT CAAGGCCAAA CACACCCTTC TTTATTAGAC ATTTTCTAGG 17693 .......... .......... .......... .......... .......... .......... 320 TACTAAGAAT ACACAATCCA CCCATTCCCA CTAGATTTTT GCTCCAGGTT CACATCATAT 17753 .......... .......... .......... .......... .......... .......... 320 ATGAAATCAA CGGTAATTCA GATTAGGAAA AAACAAGCTA ATAGAATCTG GGCGCATTTG 17813 .......... .......... .......... .......... .......... .......... 320 CAGAATAACA AAAATAGATA GCAGCTGAAA GAAAGCAAAT CCAAGTACAT ACTCCTGAAC 17873 .......... .......... .......... .......... .......... .......... 320 TCCTCTGGGA AGCTCCTAAA ATTCTTACAA TAATGACATA ATAAATCAAT CCCAGCAGAA 17933 .......... .......... .......... .......... .......... .......... 320 GCAAAAAATA CTATGTGTAT TCTCCCTATC TATTTAAGCC TCAATTGACA CAGTAAAGTG 17993 .......... .......... .......... .......... .......... .......... 320 ATATCTATGT GGATGGGAGG TAGTAGAGAT CCCATAGGAT AGAATTAATT GAGTTATAAA 18053 .......... .......... .......... .......... .......... .......... 320 AACAAAAATG AGCTTCCTTA CTTATTTATC TATTTTTATC TTTCTATTGA TACAAAATAC 18113 .......... .......... .......... .......... .......... .......... 320 TCCCCCTAGT TCACTTCTTT CGTTTTTTAG ACAACTGTAG TTACTAGACC AGCTTATGCG 18173 .......... .......... .......... .......... .......... .......... 320 CACCTTAACT AATTACATAG ATATCTGTCG CTCCCCACCA AAACAGCTAT AAAGTAACTC 18233 .......... .......... .......... .......... .......... .......... 320 TATCCTCAAG GCTAGGACAG GTAGAAAGAA ATCACTTTTC TTCTCTATGT TGGAATTTGA 18293 .......... .......... .......... .......... .......... .......... 320 ACCTTAGACC TCATGGTTCT CAACTCACTT CATTAACCAC TAGATCACAC CCTTCCTTAT 18353 .......... .......... .......... .......... .......... .......... 320 TCACTTTTTT ATGAAATCAA TGTCATTAAA TTTCAATGGT AAAATAAATT GGTTTCCTTT 18413 .......... .......... .......... .......... .......... .......... 320 CGCATTATGT TTTTATTATG ATTGTGGTGT TCACGCCAGT TTTCCCACAC CTCAACTAAT 18473 .......... .......... .......... .......... .......... .......... 320 TCCACCTCTC ACCATTAACA ACTATCAGGT AACTCTGTCC ACCAAAACTA GGACAAATAG 18533 .......... .......... .......... .......... .......... .......... 320 AAAAAAATCA TCTAGCATTT TTGTCTCTAC TAGAAATTGA ACATTAGACC TCATGATGCT 18593 .......... .......... .......... .......... .......... .......... 320 CAACCCACCT CCCTTGACCA CTAAGCCACA CCCTTTGAGA AGTTTTTTGT TAATTTTAAT 18653 .......... .......... .......... .......... .......... .......... 320 GACCTTGGTA TCCAAATACA TTGGATACGT CCCACCTCCC ACCAAATAAC TTTGTTGTCT 18713 .......... .......... .......... .......... .......... .......... 320 TCCCTGAGTT TTATAAGACC TCAGAATTCT CAACCACTTC ATTAATCACT AAGCCACACC 18773 .......... .......... .......... .......... .......... .......... 320 CTTGGGGTTT CACCACTATG TTTCAAACAT ATACAAAATA TTATTTACTA AGAAATCACA 18833 .......... .......... .......... .......... .......... .......... 320 AACTTACAGC TCAAATTTTA TATTCCGAAA TCAATATAAC AAATGAATAT GAGCTTTCAT 18893 .......... .......... .......... .......... .......... .......... 320 CTGTGCAGAA TCCCTAAGTA TGTTCAGAAT AA 18925 || | ||||| | || ||| | | || ........AA ACTCTAAG-A TGATCA-ATT AA 342 hqPGS_C04HBa0127E11.1+_SGN-U313322- (14394 14428,14884 15173,15989 15995,16963 16968,18902 18925) ******************************************************************************** EST sequence 23 -strand 1397 n (File: SGN-U313325-) 1 TTTTTTTTTT TTTTTTTTTT TTAAAAAGGT AAAAATGTGG TCAACTTAAA ATAGTTTATA 61 AGTTGAAAAA AAGAAGCACT CTTACCCCAG CTTTTAACTT TTGGCTTAAA ATAAGTTTTT 121 TTTAAAACTT AAAATAAGTT ATTTTGAGGA TTGCCAAACA ACTAAATAAG TCAAAAATTA 181 GCTTTTAAGT TAGTTTGACC AGCTTTTAAG CTGAACCAAA CAAGTTCTTT ATCTCCTACT 241 TCTGCCTTTT GTATATCTTT GCCAAGAATG ACTTCAGAAC TGCTTGCACT GCTTTGCTTG 301 GTTGAGCTTC AATGGAGTTG ATCAGCTTTT CATATGTACT CCTCTCATAT TCCAGGTACA 361 CATCCTCAAG TTTGAGATCA TTGTAGAGCG CCTTTACTTT AGCAACACAA GCAGGGTCAT 421 CTTTTCCATA GTTTTCATGT AATAACTTTT TTTGCTCATC ATTGCAGTGT TCTAGGGCTT 481 TCACTACCAA CCAAGAGCAC TTGAAATCTT GAATATCCGT GCCAATCTTA CCCAATACCT 541 CTGGATCAGC AAAGCAGTCC AAGTAATCAT CCTGAACTTG GAAATATATT CCCATTTCGA 601 GTAGTATGTT CTTGACATTA ACATGATTGT CAAGATTCTC TCCTGCCATA AGAAGTGCAC 661 ATGCCACTGG GAGATAAAAT GAATAATAAG CAGTTTTATA CTGGACAATC CGCCTATGAA 721 TAGGCAACGA GTATTTTGAT AAATCTTTCT CTCCAGAATG TGTGGTAATC AAATCTATCA 781 TTTGTCCAGA GGCAGTCTGA AATTCCACCT CATTAAACAA TTCAAGAAGA TCAACATAAT 841 AAGGCTTTCC TCTAAAGTGC TTCTTAAGAA TTCTTGGTAT GTGGTTGCGA AGAAGTATGC 901 CGTCATTAGC AGCAATCATG CCAACCTTGG GTAATCTGAA CCAGCATTTT TGACCTCGGC 961 GTGTATGAGA CCCATCCATC ATATCATCAA GAACAAGGAA ATATGCTTGA AGCCATTCAA 1021 TGCACCAGCC AAGGGAAGAT GTTTGAAAGA TTTCCTCACT GGTTAGTTCT TTCCCTTCTT 1081 TCAACAAACT GTAGCTATCA ATAACAGAGA GCCCACGGTT CAGCTTTCCT CCAGGTACAT 1141 TGTAGTCCAA CATCCGTTCG ACCCATTGAC GACCATCATC AGTAAACTCA AAATCTGGAT 1201 CATTAAGAAG CTCAGATTTC AGTATTTTGT AAACATCCAA GAACTTCGAC TTCAAATCAC 1261 TCATTTTCCC ACTGAAAAAA CTGTTGTTTT CGTTAATTTC TGATAAAGAT GAGAATTTTT 1321 GGGATTTTTG AATGCAATGC TTCTCTTCTT TCTCATATAT AGGATCCAAA TAGCTATGTA 1381 TTTGGTTGAG AAGTGAC Predicted gene structure (within gDNA segment 13597 to 27586): Exon 1 14973 15165 ( 193 n); cDNA 29 222 ( 194 n); score: 0.876 Intron 1 15166 22948 (7783 n); Pd: 0.889 (s: 0.90), Pa: 0.970 (s: 0) Exon 2 22949 22965 ( 17 n); cDNA 223 239 ( 17 n); score: 0.647 Intron 2 22966 26560 (3595 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 26561 26581 ( 21 n); cDNA 240 259 ( 20 n); score: 0.714 PPA cDNA 22 1 MATCH C04HBa0127E11.1+ SGN-U313325- 0.876 231 0.165 C PGS_C04HBa0127E11.1+_SGN-U313325- (14973 15165,22949 22965,26561 26581) Alignment (genomic DNA sequence = upper lines): GTAAAAATGT GGTCAACTTA AAACAGCTTA TAAGCTGGGG AAAAAAAGCA CCCCTACCCC 15032 |||||||||| |||||||||| ||| || ||| |||| || |||| ||||| | | |||||| GTAAAAATGT GGTCAACTTA AAATAGTTTA TAAGTTGAAA AAAAGAAGCA CTCTTACCCC 88 AGCTTTTAAC TTTTGACTTA AAATAAGTTT TTTTT--AAC TTAAAATAAG TTGTTTTGAG 15090 |||||||||| ||||| |||| |||||||||| ||||| ||| |||||||||| || ||||||| AGCTTTTAAC TTTTGGCTTA AAATAAGTTT TTTTTAAAAC TTAAAATAAG TTATTTTGAG 148 TATTGTCAAA CAGCTAAATA AGTCAAAAAC CAGCTTTTAA GTCAGTTTGA CCAGCTTTTA 15150 |||| |||| || ||||||| ||||||||| ||||||||| || ||||||| |||||||||| GATTGCCAAA CAACTAAATA AGTCAAAAAT TAGCTTTTAA GTTAGTTTGA CCAGCTTTTA 208 AGCTGAGCCA AACAGGCTCT AAATCTTAAC AGCTCAACCA TAGCCTCTCC ATTTCTCATT 15210 |||||| ||| |||| AGCTGAACCA AACA-..... .......... .......... .......... .......... 222 TGAAAACAAC AGCAAAAAGC CACAAAGAAC TTTGCTTGGA CAATGAAGAA AATATAATAT 15270 .......... .......... .......... .......... .......... .......... 222 GCAAGCAACA GCAAACACAG TATCAATATG CAACCATTAG TACGAGATAA TACATGAGGG 15330 .......... .......... .......... .......... .......... .......... 222 AAAAGCAGAT AAGATTCATG TTGAAACCAC CACTGAAGGA ACCAGAAATG AGAGCACATA 15390 .......... .......... .......... .......... .......... .......... 222 AAATATTTAG AAGATATTAA AAAAAATCTA CAAGCAAATG CCATCAACAG TATTTATCCA 15450 .......... .......... .......... .......... .......... .......... 222 TTAAAAAAAA TTAACAAAAA AAAACTAGAA AACACGAGGT GGGAATAGTT ACTGTTTCTC 15510 .......... .......... .......... .......... .......... .......... 222 CTGGTTCGAG CACATCAGCA ATTCGCCTCT TCATCTTTCC TAGTTGTTCT GATGTAAGGT 15570 .......... .......... .......... .......... .......... .......... 222 CTTGAATCTC ATCTTCATTT GATATCTTGA TAGCTTTCTT CCCAGAATAT GTTTTCTCAG 15630 .......... .......... .......... .......... .......... .......... 222 TATCAACACT ATCAAGCCAT GCATCCTGTA CACTTACTAA GATCAGGAAA AGATGCAAGG 15690 .......... .......... .......... .......... .......... .......... 222 AATGGGGCCT GGGGTAGAAA ATGTTTGATG TAAGACTAGC ACCTTTATCT CATTTTCATT 15750 .......... .......... .......... .......... .......... .......... 222 TAAATATTCA ACATAGTTTC CTGATGCATC AAAATAACCT TCTTCTCTCT CTTTATTCAG 15810 .......... .......... .......... .......... .......... .......... 222 ATTAAAAGGT TCTATTGCAA TCCCATCATC AATGAATGTT TCATTTTCCT GCAACCAGAG 15870 .......... .......... .......... .......... .......... .......... 222 ATATTCCATT AGTTACACCA GAAAGGAATA CAAGAAATAC AAAGTTTAGC CATAGAGCAA 15930 .......... .......... .......... .......... .......... .......... 222 TTAGAATATG CAAAATTTGA CATTAATGAT AATTCCAAGT ACTTCAGTTT GTTTATAGGC 15990 .......... .......... .......... .......... .......... .......... 222 TGGAGAGCCG AACCAAAGAA CAAATAACAA TATAATTCCA CGAATTTAAT GTGACAGCAC 16050 .......... .......... .......... .......... .......... .......... 222 ATGAAGCAGA AATAATGAAA TTTAATTAAC ATTTATGTTT TGAGAGTTTA AGTAAAAGAA 16110 .......... .......... .......... .......... .......... .......... 222 ATAAAATGCT CGGAAAATAA AACAGAAGGA AACAAAGGAA GTAAAGCTAC AAATTTTATT 16170 .......... .......... .......... .......... .......... .......... 222 TCCATTGTTT CATTGGCGAG GGAATTATGA AGAACAGGAA AAATTTATTC AAGGGAACTC 16230 .......... .......... .......... .......... .......... .......... 222 AGATAAATTC TTTTCTTCTT TGTAATCCTA TTCTCATCTC TATGCAAATT AAAGTACGTG 16290 .......... .......... .......... .......... .......... .......... 222 CAGAATTTAA ATCTTACCCA TTTTCTATTT GTAAAGTTCA AAAACCCACA GTTCATAAAG 16350 .......... .......... .......... .......... .......... .......... 222 TCCAAGGAAG AACTCTACAT AAGATAGAAT GAGACAAGCC TATTGGACAC AGAAACAACG 16410 .......... .......... .......... .......... .......... .......... 222 ATTCATGCTC AGTGAATTTA AAAGTGAAAA GTGCAAAAAA AGCGTCTGCG AGGCTTGAAA 16470 .......... .......... .......... .......... .......... .......... 222 TGAATAGGAG AGAAGTAAGG CACATGCTTT ATTAAGTGAA GCGCACAATT ATTTGATGAT 16530 .......... .......... .......... .......... .......... .......... 222 GATTCCTTTA CACATGGCAT GCAACCTTAT GCTATTCCTT TTGATGAGCC GCTATATGCT 16590 .......... .......... .......... .......... .......... .......... 222 AAGAAAAAAC ACCATTCTGT CTCCTTGACC TTTGTTTCAA GAGCATAAGG ATTGATATGT 16650 .......... .......... .......... .......... .......... .......... 222 ATTAGTGGGG TTTTTAAAAT GAAGTTACAG ATGGTCCCTA TTTTGCTTAC GTTACTACTT 16710 .......... .......... .......... .......... .......... .......... 222 ACTACTTGGG GAATATAATT AGCAATCATG ATTATTTATG GTTTTCAATT GTGCATGAGT 16770 .......... .......... .......... .......... .......... .......... 222 ACCCATATCT CAGCTCTTTT AAAGAAGATT ACCCATATCT AAGTTGTTCT AGCTAAACAC 16830 .......... .......... .......... .......... .......... .......... 222 GCAGCACAAA TCATGCCAAG CCCCAAAAAA GTTTGTAATA ATCCTAGTAT CACTTCCTTA 16890 .......... .......... .......... .......... .......... .......... 222 TCAAGAGATA TGAAGTAGAC ATCAGATATC CACAAAGTAC CTAACTACAA TCAAACAATT 16950 .......... .......... .......... .......... .......... .......... 222 ATGGAATAAC AGATATTGGA AGGACAAACC TCATATTCCA CTTCTGCCCG CGATATGTCA 17010 .......... .......... .......... .......... .......... .......... 222 GCTATTTCAC CTTCGTTTTC TTCATCAAGG AGTTCCGCTG TTATTTGATT CCGCCGTGCC 17070 .......... .......... .......... .......... .......... .......... 222 GAACGCTCTT TGGCTGCATT GCGAGGATCT GTCCGCCCAC TAGGTTTATC TTCACACCCA 17130 .......... .......... .......... .......... .......... .......... 222 TCAATCGTGG TATCGCCCTG CTTTGCCTTC TTACCCTTTG GGAACCTTAC ACGCTTCTGC 17190 .......... .......... .......... .......... .......... .......... 222 CTGTGATGTT GAGGAAGAAA GCAACATGTC AATGCAAACA TCCTTAAAAT CCAGCATCAT 17250 .......... .......... .......... .......... .......... .......... 222 AAATGAAACT ATTTTGAACC CAACAAATGA GGTTGTCATA GAGCATGGCA GACGTCACAT 17310 .......... .......... .......... .......... .......... .......... 222 GGAAAAAAAA AACGCTATTT GAAGTTGTAT TACTTGCTAT TGCTGTCTCA TGAAACACAT 17370 .......... .......... .......... .......... .......... .......... 222 TATCTTTACA AGGAAAATAA CAGTAGGTAA AAAAGATCTA TTTTTTCTCG TACTAAACTC 17430 .......... .......... .......... .......... .......... .......... 222 ATGACAGTCT CAACAACAAA ATACAACCTC TAATCTGAAA AAGAAAGCAG TCTACTTTAT 17490 .......... .......... .......... .......... .......... .......... 222 CTTCAAAGAC AAACTATTGA GCACTGGAAT GAAATGATCA CAGTTAGAGT AAATAGATAT 17550 .......... .......... .......... .......... .......... .......... 222 AGAGATTACA TATAACTAAT CCAATTAGTT TGGGCATGAG GCATAGTCAC TGTATAATTC 17610 .......... .......... .......... .......... .......... .......... 222 CTTAAATCTC CAACAAATAA AGTATTTTCT TGCATAGTTC TCTCAAGGCC AAACACACCC 17670 .......... .......... .......... .......... .......... .......... 222 TTCTTTATTA GACATTTTCT AGGTACTAAG AATACACAAT CCACCCATTC CCACTAGATT 17730 .......... .......... .......... .......... .......... .......... 222 TTTGCTCCAG GTTCACATCA TATATGAAAT CAACGGTAAT TCAGATTAGG AAAAAACAAG 17790 .......... .......... .......... .......... .......... .......... 222 CTAATAGAAT CTGGGCGCAT TTGCAGAATA ACAAAAATAG ATAGCAGCTG AAAGAAAGCA 17850 .......... .......... .......... .......... .......... .......... 222 AATCCAAGTA CATACTCCTG AACTCCTCTG GGAAGCTCCT AAAATTCTTA CAATAATGAC 17910 .......... .......... .......... .......... .......... .......... 222 ATAATAAATC AATCCCAGCA GAAGCAAAAA ATACTATGTG TATTCTCCCT ATCTATTTAA 17970 .......... .......... .......... .......... .......... .......... 222 GCCTCAATTG ACACAGTAAA GTGATATCTA TGTGGATGGG AGGTAGTAGA GATCCCATAG 18030 .......... .......... .......... .......... .......... .......... 222 GATAGAATTA ATTGAGTTAT AAAAACAAAA ATGAGCTTCC TTACTTATTT ATCTATTTTT 18090 .......... .......... .......... .......... .......... .......... 222 ATCTTTCTAT TGATACAAAA TACTCCCCCT AGTTCACTTC TTTCGTTTTT TAGACAACTG 18150 .......... .......... .......... .......... .......... .......... 222 TAGTTACTAG ACCAGCTTAT GCGCACCTTA ACTAATTACA TAGATATCTG TCGCTCCCCA 18210 .......... .......... .......... .......... .......... .......... 222 CCAAAACAGC TATAAAGTAA CTCTATCCTC AAGGCTAGGA CAGGTAGAAA GAAATCACTT 18270 .......... .......... .......... .......... .......... .......... 222 TTCTTCTCTA TGTTGGAATT TGAACCTTAG ACCTCATGGT TCTCAACTCA CTTCATTAAC 18330 .......... .......... .......... .......... .......... .......... 222 CACTAGATCA CACCCTTCCT TATTCACTTT TTTATGAAAT CAATGTCATT AAATTTCAAT 18390 .......... .......... .......... .......... .......... .......... 222 GGTAAAATAA ATTGGTTTCC TTTCGCATTA TGTTTTTATT ATGATTGTGG TGTTCACGCC 18450 .......... .......... .......... .......... .......... .......... 222 AGTTTTCCCA CACCTCAACT AATTCCACCT CTCACCATTA ACAACTATCA GGTAACTCTG 18510 .......... .......... .......... .......... .......... .......... 222 TCCACCAAAA CTAGGACAAA TAGAAAAAAA TCATCTAGCA TTTTTGTCTC TACTAGAAAT 18570 .......... .......... .......... .......... .......... .......... 222 TGAACATTAG ACCTCATGAT GCTCAACCCA CCTCCCTTGA CCACTAAGCC ACACCCTTTG 18630 .......... .......... .......... .......... .......... .......... 222 AGAAGTTTTT TGTTAATTTT AATGACCTTG GTATCCAAAT ACATTGGATA CGTCCCACCT 18690 .......... .......... .......... .......... .......... .......... 222 CCCACCAAAT AACTTTGTTG TCTTCCCTGA GTTTTATAAG ACCTCAGAAT TCTCAACCAC 18750 .......... .......... .......... .......... .......... .......... 222 TTCATTAATC ACTAAGCCAC ACCCTTGGGG TTTCACCACT ATGTTTCAAA CATATACAAA 18810 .......... .......... .......... .......... .......... .......... 222 ATATTATTTA CTAAGAAATC ACAAACTTAC AGCTCAAATT TTATATTCCG AAATCAATAT 18870 .......... .......... .......... .......... .......... .......... 222 AACAAATGAA TATGAGCTTT CATCTGTGCA GAATCCCTAA GTATGTTCAG AATAAATTAG 18930 .......... .......... .......... .......... .......... .......... 222 GGCACAAAAT CACATGAAAT TTTTCAAAAA TAAAAAATAA AAAGAAAGAA GGAAGGAAAT 18990 .......... .......... .......... .......... .......... .......... 222 AGTTACTCTG GAGCTTTATT GGAGTCATCG TCCTCAACGA AGGGACGTTT GGCACGTCGC 19050 .......... .......... .......... .......... .......... .......... 222 GATGAACCTT CTTCCATGGC GTAATCGGCA ATTGATATGA AGGATTCAGA AAGGAAAAAA 19110 .......... .......... .......... .......... .......... .......... 222 AATGAAGGGG CAAAGTGAAG AGAGAGCGGT GGTACTGGTA AACATCAAAA AAAATAATAA 19170 .......... .......... .......... .......... .......... .......... 222 TAATAAATTC TATCTTACAA ACTATAATAC CTTTTTTAAA TTGATAAATA TCTAAAATTA 19230 .......... .......... .......... .......... .......... .......... 222 ACATTACCAA TATTAATCTT ATTGGATAAA TTCAAATAAG TTATTGATAA TATAGAAAAA 19290 .......... .......... .......... .......... .......... .......... 222 TAATATTATA AATTATTAGT TGAGAAATGT GACAACACAA AAAATATACT AATAGCTGAG 19350 .......... .......... .......... .......... .......... .......... 222 ATAATTTGTA AAATAAAATT ATCATTTTAC TTTATTATGG ATATTCATGT CTACTAGTCA 19410 .......... .......... .......... .......... .......... .......... 222 TTTTTATCAT TAATTAATAT TTAGGATGAT GATTATTATT ATTATTATTA TATATATATA 19470 .......... .......... .......... .......... .......... .......... 222 TATATATATA TATATATATA TATAAAAGAG ATAAAAATGT AAGATCAAAT TGTTTCATAA 19530 .......... .......... .......... .......... .......... .......... 222 ATATATAGAA TAAATTACAA TTTACAAATA TTAATATTTT TTTAATTTAA TCACTCTGTC 19590 .......... .......... .......... .......... .......... .......... 222 ACAGTTTTGC ATAGATAAAA ATGATCGATA AATTATTTCG TTCGACATTT GCACAAGGAT 19650 .......... .......... .......... .......... .......... .......... 222 TTTACTTTTA TAAAAATGAT ATTTCAAAAA AATTGTATAA CTAATTATTT TCATAAATAA 19710 .......... .......... .......... .......... .......... .......... 222 ATTACTTATG TTGAATAGTT TAATTTGGTT ATTAGTTCAC TAACTCCTTG TTATAAAGAT 19770 .......... .......... .......... .......... .......... .......... 222 ACAATTTATT TCATTTTAAT GGTATTATTG AATAAGTAGT ATTATAGGAT TGTTTTGGTA 19830 .......... .......... .......... .......... .......... .......... 222 TTTCAATTTT TATTTTTTTT TTGTTTAACT CAATATTATA GGATTATTTG GTATTTCAAA 19890 .......... .......... .......... .......... .......... .......... 222 TATAATTTTT TGTTTAAGTC AATATTCAAA TTTTGTGTAT AAAAAGTACA TAAATTTGGT 19950 .......... .......... .......... .......... .......... .......... 222 ATAAAATATG TATATAACTA TATAAAATTT GTATGAAGCT CATGTTAGAT ACTATTGCAT 20010 .......... .......... .......... .......... .......... .......... 222 ACAACATTCA TATCAAACTA AATACAACTA CAATACCAAC AAATGATATG TTGCAGTAGA 20070 .......... .......... .......... .......... .......... .......... 222 TGAGTTACTC CTGTCGGGTT TCAGATTCGA ATCATCAGTA TGTAAAAATT CTTGATAGAG 20130 .......... .......... .......... .......... .......... .......... 222 TGTGTTTTCC CTCAAATGAC CCTACGTGAC ATGAATTTGG GAAAGTCAAG CTTCAGTGGA 20190 .......... .......... .......... .......... .......... .......... 222 TACTTAACAC TTAGTGAGAG ACTAGAAAAA AAAATACAAC TATTATAAAT ATACCAAACT 20250 .......... .......... .......... .......... .......... .......... 222 TAAAAAATAA TTTACTCATA ACTCATCCGC CATATTATGA TTATCATTTG ATTTTTGATA 20310 .......... .......... .......... .......... .......... .......... 222 CAATTGTATG TAATTTTGAA TTTAAACGAA GTAAAATCAA AATTTCAATT CGAAACTAAT 20370 .......... .......... .......... .......... .......... .......... 222 TCGAATTTTA CCCAAATAAT CTCAAATTTT ATATTATTAG TCTCCTCGAA ATTCCATTTC 20430 .......... .......... .......... .......... .......... .......... 222 TTTGGAGAAA TCACCAATTG AAACGAAAGT TTTCCTATAG ATTCCCCAAA CAAGGAAAAT 20490 .......... .......... .......... .......... .......... .......... 222 TAAAAAGAAA TCCTTAATTA TAATCTGATT TCGTTCGATA AAACTTTTAA AATAATGTTT 20550 .......... .......... .......... .......... .......... .......... 222 GTTCTAGGAA GACTTGTTGT TGAGTTTCTT TCTGAAATAG TCTATCTGCC TCCACGAGGT 20610 .......... .......... .......... .......... .......... .......... 222 ACTCGTACGA TCTACATACG CTTTAGCTTT TAATTTTTGT CTAAAGACAC AACTTGTGTC 20670 .......... .......... .......... .......... .......... .......... 222 ACTGAATTTA TAAAGTATAA CTCGTGTCAT GCAATTTTAA ATTCTTGCCT CAACACTTAC 20730 .......... .......... .......... .......... .......... .......... 222 CAGAGAATAT ATACTTTTCT TTACTATTAA CCTTAACTCT TTCTGCTTTA AGACTTTTTC 20790 .......... .......... .......... .......... .......... .......... 222 TAATGTTGGA TTTTCTTAAG CTTTAAATAC TCATTTCCAT CATAACAATT ATCAAACTCT 20850 .......... .......... .......... .......... .......... .......... 222 CAATCTACTG CTATACTTGA GACTTACAAC TTTGAGGCTG GTAAATGTGC TAGTCGTCTC 20910 .......... .......... .......... .......... .......... .......... 222 AAGGCTTGCG TTTGCATATA TAGGAAGGAG AAGAAATTAT AGTATGTGGC AGAGGAGATT 20970 .......... .......... .......... .......... .......... .......... 222 CAATCACTCA AGCAACGAAT CATGGATATC TCTCGCAAAC GAGAGACTTA TCGTATTACA 21030 .......... .......... .......... .......... .......... .......... 222 AATATCAATT CAGGAGATCA AGGGCCAAGT AATCAGGTTA CAATATTGAG GAGAACTACC 21090 .......... .......... .......... .......... .......... .......... 222 TCATATGTGG ATGACCGCGG TTACATTTTT GTTGGATTTC AGGAATGTTG TACAAACATT 21150 .......... .......... .......... .......... .......... .......... 222 GCTAGTTGAA ATTCTCAAAC CAGAGCCTTG TCGAAGTGTC CTCTGCATTT ATGGCATGGG 21210 .......... .......... .......... .......... .......... .......... 222 CGGTGTAGGC AAGACCACTC TTGCGAGAAA CCTCTACAGA AGTCCTAGTA TATAGTCAAT 21270 .......... .......... .......... .......... .......... .......... 222 ACCTTCCCTA CACGTGTGTC GATATGTGTT TCTCAAGAGT GCAACACAAT GGATCTTCTT 21330 .......... .......... .......... .......... .......... .......... 222 AAGACTATCA TAAAATCCAT CCAAGTTTGC ACCAACGAAA CTCTTGATTT GTTGGAAAGG 21390 .......... .......... .......... .......... .......... .......... 222 ATGGCAGAAA GAGATCTAGA AATTTACCTT CGTAAGCTAT TAACAAAACA CAAATACCTT 21450 .......... .......... .......... .......... .......... .......... 222 TTGGTGGTTG ATGGTGTGTG GCTAATAGAA GCATGGAAGA GTTTGAAAAG AGCATTTCCG 21510 .......... .......... .......... .......... .......... .......... 222 GATAACAATA ATGGCAGCAG AGTTGTTATT ACCACACGCA AAGTGGATGT CGCTGAAAGA 21570 .......... .......... .......... .......... .......... .......... 222 GCAGACGACA GAGGTTTTGT CCATGAACTT CGTTTCCTAA GCCAAGAAGA AAGTTGGGAT 21630 .......... .......... .......... .......... .......... .......... 222 TCTTTTGTAG GAAACTACTT GATGTTCGAT CAATGGTTAC AGCAATGGAA AGTCTAGCTA 21690 .......... .......... .......... .......... .......... .......... 222 AGGATATGGT GGAAAAGTGT AGAGGCTTAC CTCTTGCAAT TGTTGTATTG AGCGGATTGT 21750 .......... .......... .......... .......... .......... .......... 222 TGTTCATCTT GTATTCCAAA CATACTTAGA ACAAAACTTT GAACATCTTT GTAAGAAAAC 21810 .......... .......... .......... .......... .......... .......... 222 AAAGTTTAAG AACATTTTCA CAACTAGAAA ATTAAAACTA GTAGCGAAAC TAGAATCAGA 21870 .......... .......... .......... .......... .......... .......... 222 AACAGATTTT AAAAAAAATA TACGAAATAT TTTTCTTAAA GAGGAATTGT TGTTAATATG 21930 .......... .......... .......... .......... .......... .......... 222 TGTCTAAAGA ATCTTACTGA TTCCAACAAA CTTTGCAGAA ACACGAAGTT ACCAAGTTTA 21990 .......... .......... .......... .......... .......... .......... 222 ATGAACCAGT GAAGAATAGA AGAATAGAAG AACTGAAATT AATTCACAAA TCTAAAATTT 22050 .......... .......... .......... .......... .......... .......... 222 GTAAAACACG TACCAGAATC TGAAAAAAAA TTTAATAGGA AAAAGATCAA GTCCACTGAA 22110 .......... .......... .......... .......... .......... .......... 222 TTCACAGTGT CCCCTTAAGG AAATTATTCC CCTCTAGTAT CCGAGGTTTG ATTTGGAATA 22170 .......... .......... .......... .......... .......... .......... 222 TGACCTCCTA GGGTAAAATG ATCTCAATCA CCAGAGTATA GATACCAAAA ACTCCGGTGT 22230 .......... .......... .......... .......... .......... .......... 222 CAGCGAACCA CTCAACGGCA GTAAAGTACA CTTAGAATAC TAAATTTAGT AGTTGAAGAA 22290 .......... .......... .......... .......... .......... .......... 222 GAAGTCCATT AATTCTTTTT TTAAAATGAG AGGAAATCCC TCAATTTATA GAAGACAAAG 22350 .......... .......... .......... .......... .......... .......... 222 GGTGGTGCGA AAAGGTTCTT ATTGTGCCTT ACCGGAAAGG TCACAAACCT TTGGAAAAGT 22410 .......... .......... .......... .......... .......... .......... 222 CACAATCTTT CAGAATGATC GTCACCTTTC ATAAAACTCA CAACTTTCCA TAAAAGTCAC 22470 .......... .......... .......... .......... .......... .......... 222 AATTTTTCAT AAAAATTGCA ACTTTTCATA AAAGTCACCA CTTTTCATCA AAGTCGCAAC 22530 .......... .......... .......... .......... .......... .......... 222 ATTTCATAAA AGTCACAACT CTTCATAAAA GTCGCAACTC TTCATTTTCC ATTCACGCCT 22590 .......... .......... .......... .......... .......... .......... 222 TTTTTAAAAT CCAACACGGA TTACTTTCGC ATAAAATGGG GCTAGACGAA TGGCAAAAGG 22650 .......... .......... .......... .......... .......... .......... 222 TGAAAGACTG CCTTTGGAAG AACATTGAAG ATGACTCTAT TGAAATCTCC TATATACTAT 22710 .......... .......... .......... .......... .......... .......... 222 CATTGAGCTA TAATGATTTG TCAATTGTGC TCAAGCAATG TTTTCTGTAC TTTGATATTT 22770 .......... .......... .......... .......... .......... .......... 222 TTCCAGAAGA TCAAGTGGTC GATGTTGAGA ACATAATATG GTTGTGGATG GCCGAGGGTT 22830 .......... .......... .......... .......... .......... .......... 222 TCATACCAAA TGGAGAAGAA AGAATGGAGG ATGTCGCTGA ATGCTACTTG AATGAGCTGA 22890 .......... .......... .......... .......... .......... .......... 222 TAAGACGAAG CTTGATACAA GTGGTAAATA CATCTTGAGA AAAAGTTACT TTATGCAGGG 22950 | .......... .......... .......... .......... .......... ........AG 224 TTCATGATTT ACTTCGTGAT CTTGCAATAC AAAAGGCATC GGAGATAAAC TTCTTTAACA 23010 ||| | || | || | TTCTTTATCT CCTAC..... .......... .......... .......... .......... 239 TTTATGATCC AAGAAATCAC TCCATATCCT CTTCATGTAT TAGACATGCC ATTCATAGTC 23070 .......... .......... .......... .......... .......... .......... 239 AAGGAAAAAG GTACCTCTAA CCTGATCTTT CTAATTTAAA GTTGAGGTCA ATTATGTTCT 23130 .......... .......... .......... .......... .......... .......... 239 TCGATCCAGA TTTTCATAAT CTGTTTGAAC TTACAGATGT GTTCCGACGT TTATATGTGT 23190 .......... .......... .......... .......... .......... .......... 239 TGTAAATTGG CAACCTCAAG AATCTACAGA CACTTTGTGT TGTAAATGAA ACTGGACGCT 23250 .......... .......... .......... .......... .......... .......... 239 TATACCAACT ACCCCACGAG ACAGCTGACC TAATAAATCT AAGACATTTA GTTGCTCGGT 23310 .......... .......... .......... .......... .......... .......... 239 ATTGAGAACC TCTGGTACGT ATAAACAAAC TCACTAGTCT TCATGTTCTT AAAGACATCT 23370 .......... .......... .......... .......... .......... .......... 239 CTTGTGATCA GTGGGAAGAT ATTGACCCTG CTTATTTAAT CAATCTTCGA GAATTAACCA 23430 .......... .......... .......... .......... .......... .......... 239 TGCGTAATAT TTGGAATTAT TACTCCCTAA ACAACATTAG CAGCTTGACA AACCTAAGCA 23490 .......... .......... .......... .......... .......... .......... 239 CTCTCACATT GTTTTCTGAA GAAGTAATAT CATTCCCATC CCTTCAATTT GTTAATCGTT 23550 .......... .......... .......... .......... .......... .......... 239 GTGAAAAGCT CCAGAAATTG TATTTAAATG GGAGAATAGA GAAATTGTCT CCGTTTCCAA 23610 .......... .......... .......... .......... .......... .......... 239 ATTCCATCAC AATGATTGTT CTGAGGGACT CAGTACTGAC AGAAGATCCG ATGCCTATTT 23670 .......... .......... .......... .......... .......... .......... 239 TGGGAATGTT GCCAAACCTA AGGAATCTCG AATTGTGTAG AGCTTATGAA GGAGAAGAAA 23730 .......... .......... .......... .......... .......... .......... 239 TAACGAGCAA TGATAACAGC TTCAGTCAAC TAAAGTTCAT TTATCTTGGT TTTCTTTCAA 23790 .......... .......... .......... .......... .......... .......... 239 AGCTAGAAAG ATGGAATTTA AGCACAAACG CGATGCCTCT CATTAAAGCT CTTCATATCG 23850 .......... .......... .......... .......... .......... .......... 239 ATCATTGTCC GAAGCTCATG GAGATTCCAG AGAGAATGAA AGGCGTGAAG CGTATTTGAT 23910 .......... .......... .......... .......... .......... .......... 239 TATAGCAAAG GTAAATATAC AAACAAATCC TAATCTTACA TAATTTTGTA GAAAAATCAC 23970 .......... .......... .......... .......... .......... .......... 239 CTATAGGAGT TTTTTTTCCA AACATATATG AAATCTCGTG TATGAAAACA GCGTAAAATT 24030 .......... .......... .......... .......... .......... .......... 239 CATATGAAAT ATATCTATCT CACTTAGAGC TTAGAATTTC GTTCATAATT TTTGTGTATG 24090 .......... .......... .......... .......... .......... .......... 239 AACAATATAT AAACTTTGTA TAAAGTTCAT TACTGAAAAT CTCATACAAC TACAACAACA 24150 .......... .......... .......... .......... .......... .......... 239 TTGTATACAA TATTCATATC AAACTAAATA CAACTACAAT ACCAGCAAAA GATATGTTGC 24210 .......... .......... .......... .......... .......... .......... 239 AGACTGCAGT GGATGAAGTT GCTCCTTCCA GGTCTCGGGT TTAAATCCTC GGTATGGAAA 24270 .......... .......... .......... .......... .......... .......... 239 AATTATTGGT ATGGAGCACT CTCCTCAAAT GGCCCCTACG TGGCGTGAAT TCGGGATAGT 24330 .......... .......... .......... .......... .......... .......... 239 CAGGCTCCCA CGGATACCAG ACACCAAATG GGAGATCAGA AAAAAATACA ACTATGATAA 24390 .......... .......... .......... .......... .......... .......... 239 CATAGTAAAC TTAAAAACAA TTTACATATA ACTCATCCGG CATTATATGA TTTTTGATAC 24450 .......... .......... .......... .......... .......... .......... 239 AATTCGTCTG TAGTTTTGAA TTTGAATGAA CTAAAATTAC AATAATCTCA AATTTTATGT 24510 .......... .......... .......... .......... .......... .......... 239 GTTTCTCAAG AGTACAACAC AATGAATCTT CTTAAAACTA TCATAAAATC CATCCAAGGT 24570 .......... .......... .......... .......... .......... .......... 239 TACAACACAA AAACTCTAGA TTTGTCGGAA AAGATGGCAG AAAGAGATCT AGAAAATCAC 24630 .......... .......... .......... .......... .......... .......... 239 CTTCGTAAGC TAATAACAAA ACACAAATAC CTTGTGGTGA TTGATGATAT GTGGCAGCGA 24690 .......... .......... .......... .......... .......... .......... 239 GAAGCGTGGA AGAGTTTGAA AAGAGCATTC TCGGATAGCA ATAATGCCAG CAGAGTTATT 24750 .......... .......... .......... .......... .......... .......... 239 ATTACCACTC GCAAAGTGGG TGTCGCTGAA AGAGCAGACA ACAGAGGTTT TGTCCATGAA 24810 .......... .......... .......... .......... .......... .......... 239 CTTTGTTTCC TAAGACAAGA AGAAAGTTGG GAACTCTTTT GTAGGAAACT AGTTGATGTT 24870 .......... .......... .......... .......... .......... .......... 239 CGAGCAATGA TTCCAGCGAT GGTAAGTCTA GTTAAGGATA TGATGGAAAC TATAGAGGCC 24930 .......... .......... .......... .......... .......... .......... 239 TACCTCTTGC AATTGTTGTA TTGAGTGGAC TACTTTAGCA TGAAAGGGGA CAAGACGAAT 24990 .......... .......... .......... .......... .......... .......... 239 GGCAAAAAGT TAAAGACTGC CTTTGGAAGG ACATTGAAGA AGACTCTATT GAAATCTCCT 25050 .......... .......... .......... .......... .......... .......... 239 ACATACTATC ATTAAGCTTC AACGATTTTT GTCAGCTACG CTCAAGCGGT ATTTTCTGTA 25110 .......... .......... .......... .......... .......... .......... 239 CTTTGGTATT TTTCCAGAAG ATCAAGTGGT CGAGGCCAAT AACATAATAC GGATGTGGAT 25170 .......... .......... .......... .......... .......... .......... 239 GGCAGAGGGT TTCACCATAC CAAGAGGAGA AGAAAGAATG GAAAATGTCG CTGAAGGCTT 25230 .......... .......... .......... .......... .......... .......... 239 GTTGAATGAG CTGATAAGAC GAAGCTTGGT TCAAGTGGCT AAAACATTTT GGAAAAAAGT 25290 .......... .......... .......... .......... .......... .......... 239 TACTGAAAAT GTAGGGTTCA TGATTTACTC CGTGATCTTG CGATATAAAA GGCATCCGAC 25350 .......... .......... .......... .......... .......... .......... 239 ATAAACCTCT TTGACATTTA TCATCCAACC ATTCTTAGTC AAGGAGAAAG GTACCACTCA 25410 .......... .......... .......... .......... .......... .......... 239 CTTGATCTTT CTAATTTGAA GTTGAGGTCA ATTATGTTCT TCGATCCAAA TATTTGTAAT 25470 .......... .......... .......... .......... .......... .......... 239 GTGTTCCAAC ATATAGATGT GTTTTGATAT CTATATGTGT TGTACTTGGA AATTAAGAAG 25530 .......... .......... .......... .......... .......... .......... 239 GTGTTATACC TTTGTGTTAA TATTTCTAGA GAAGAAGTTG TACATGAAGA CATTCAAGTT 25590 .......... .......... .......... .......... .......... .......... 239 CATCAACTTG GCTTCTGCAA CACTTGGATT GTTTCAACTT TCTCCTGTTT TTTTTTTTTT 25650 .......... .......... .......... .......... .......... .......... 239 TTTTTTGCTT GTTTTTAGTG TGGGGAATTG GTTCAAACAA TTATTTTTTT TGGGATTCTA 25710 .......... .......... .......... .......... .......... .......... 239 TTCTAAAATG ATTTTGTGAT GATTTAATTA AGGAAAAAAA GGCTCAAATA TGTCGTCAAA 25770 .......... .......... .......... .......... .......... .......... 239 CTATTATAAA CGACTCATTC ATGTCATTCG CCATTACAAA ACAGGTTTCA TCTTATGCAA 25830 .......... .......... .......... .......... .......... .......... 239 CTCTTGCAAA AACAGCTGAA TCTAAGAAGT CGTTAAACTT GAACATTAAC AAAACTCATT 25890 .......... .......... .......... .......... .......... .......... 239 TTCGCCATCG GTCGTTGAAA GTTTGATTCA TCTATGTCAT TTTACCTAAC AGGATTCTGA 25950 .......... .......... .......... .......... .......... .......... 239 TGTCATCTTC TTGAACTTTT GATAAAAAAT GATCGTTCAA GTTTCATAAG CTCCAAAAAT 26010 .......... .......... .......... .......... .......... .......... 239 ACTAAAGCTC ACACAACAAT CAACGAACGA CCAGGTGATC GATCTGTCAG TCTCAGCAAG 26070 .......... .......... .......... .......... .......... .......... 239 TCATAAATGA CTTGGGATCG CTATAGGAAT GCTCTAAACG ATGCACAGAA GATAAAATAC 26130 .......... .......... .......... .......... .......... .......... 239 TAAAAATGAC AAGAAGGGTC ATTACAAAAT CACATGAATA AGTCGTTTCT CAAACGAAAT 26190 .......... .......... .......... .......... .......... .......... 239 TGATATAGAA GAAACAAACT TTTAAATTTT GGTGACACTA AATTATGGAT CAGTAAATTT 26250 .......... .......... .......... .......... .......... .......... 239 TATTAAAGGG AATAAAATTG TCACTAAAGC TTTGAAGGGT ATTTTCTTTC ATATAAATTT 26310 .......... .......... .......... .......... .......... .......... 239 TATGCAACTA CAACAACATA CAACACAATT TTTATATAAC TCATCAATCA TTATACAATT 26370 .......... .......... .......... .......... .......... .......... 239 ATCAAATTAC TTTAATATAA TTTTGAATTC CAACGAAATA AAACTAAAAT TCAATACAAA 26430 .......... .......... .......... .......... .......... .......... 239 AGTTGCTCAA TTTTTACTAA ATAAATTTCA TTTTGAGAAA TCACTAAAAA TTAATTTTGA 26490 .......... .......... .......... .......... .......... .......... 239 GAACTTGAAC TTCAAGTTCT AACAAAATCT TTTATGGAAT AACCTCCATG GATGAATTCG 26550 .......... .......... .......... .......... .......... .......... 239 AATTAATTTG TGCTGACTTA TCGAATATTT T 26581 | ||| ||| | | |||| | | .......... TTCTGCCTT- TTGTATATCT T 259 hqPGS_C04HBa0127E11.1+_SGN-U313325- (14973 15165,22949 22965,26561 26581) ******************************************************************************** EST sequence 27 -strand 785 n (File: SGN-U334277-) 1 ACTCAACCCT ATCTCGTTCT TTCTTTTATT TATAAGGGAT TTGCCGATTT CGGCCTATTG 61 GTTAAAAATG AGCTGGTTTA ACAAAAATGA AACGCGAATT TTACAAAATA TTAACGCTTA 121 CAATTTGCCA TTCGCCATTC AGGATGCGCA ACTGTTGGGA AGAGCGATCG GTGCGGGCCT 181 CTTCGCTATT ACGCCAGCTG GCGAAAGGGG GATGTGCTGC AAGGCGATTA AGTTGGGTAA 241 CGCCAGGGTT TTCCCAGTCA CGACGTTGTA AAACGACGGC CAGTGAATTG TAATACGACT 301 CACTATAGGG CGAATTGGGT ACCGGGCCCC CCCTCGAGTT TTTTTTAACT TAAAATAAGC 361 TGTTTTGAGT ATTGCCAAAC AGTTAAATAA GTCAAAAACC AGCTTTTAAG TCAGTTTGAC 421 CAGCTTTTAA GCTGAGCCAA ACAGGCTCTA AGTTGCTCAA AAGTGGTTTT TGGAGCCTTT 481 GGGAGCTTCG AGTGTCGGAA TAAAGTTCCA TCAATACCAT CAGTACCGGA ATGTGGAATC 541 TGAGTTGTGA GAGTTGTTCG TTTCGTATTC TGAGTCTTTT TGAGGATTTG AGGTCCTAAG 601 TTGTGAAATT GTGGGCTTTT GGGTTGACTT TGGTGAACAT TCGGGGTTTG GATGCTCGGC 661 TCAGAATTTC CGAGTGTTTT GTTGAATTTG GGGGATGATT TTTGAGAGGT TTCGAGCTTG 721 TTTTACACTT TTGCCTGCAG CCCGGGGGAT CCACTAGTTC TAGAGCGGCC GCAACCGCGG 781 TGGAG Predicted gene structure (within gDNA segment 10665 to 19112): Exon 1 15058 15176 ( 119 n); cDNA 337 455 ( 119 n); score: 0.950 Intron 1 15177 15810 ( 634 n); Pd: 0.000 (s: 0.94), Pa: 0.672 (s: 0) Exon 2 15811 15818 ( 8 n); cDNA 456 463 ( 8 n); score: 0.750 MATCH C04HBa0127E11.1+ SGN-U334277- 0.950 127 0.162 C PGS_C04HBa0127E11.1+_SGN-U334277- (15058 15176,15811 15818) Alignment (genomic DNA sequence = upper lines): AGTTTTTTTT AACTTAAAAT AAGTTGTTTT GAGTATTGTC AAACAGCTAA ATAAGTCAAA 15117 |||||||||| |||||||||| ||| |||||| |||||||| | |||||| ||| |||||||||| AGTTTTTTTT AACTTAAAAT AAGCTGTTTT GAGTATTGCC AAACAGTTAA ATAAGTCAAA 396 AACCAGCTTT TAAGTCAGTT TGACCAGCTT TTAAGCTGAG CCAAACAGGC TCTAAATCTT 15177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| | AACCAGCTTT TAAGTCAGTT TGACCAGCTT TTAAGCTGAG CCAAACAGGC TCTAAGTTG. 455 AACAGCTCAA CCATAGCCTC TCCATTTCTC ATTTGAAAAC AACAGCAAAA AGCCACAAAG 15237 .......... .......... .......... .......... .......... .......... 455 AACTTTGCTT GGACAATGAA GAAAATATAA TATGCAAGCA ACAGCAAACA CAGTATCAAT 15297 .......... .......... .......... .......... .......... .......... 455 ATGCAACCAT TAGTACGAGA TAATACATGA GGGAAAAGCA GATAAGATTC ATGTTGAAAC 15357 .......... .......... .......... .......... .......... .......... 455 CACCACTGAA GGAACCAGAA ATGAGAGCAC ATAAAATATT TAGAAGATAT TAAAAAAAAT 15417 .......... .......... .......... .......... .......... .......... 455 CTACAAGCAA ATGCCATCAA CAGTATTTAT CCATTAAAAA AAATTAACAA AAAAAAACTA 15477 .......... .......... .......... .......... .......... .......... 455 GAAAACACGA GGTGGGAATA GTTACTGTTT CTCCTGGTTC GAGCACATCA GCAATTCGCC 15537 .......... .......... .......... .......... .......... .......... 455 TCTTCATCTT TCCTAGTTGT TCTGATGTAA GGTCTTGAAT CTCATCTTCA TTTGATATCT 15597 .......... .......... .......... .......... .......... .......... 455 TGATAGCTTT CTTCCCAGAA TATGTTTTCT CAGTATCAAC ACTATCAAGC CATGCATCCT 15657 .......... .......... .......... .......... .......... .......... 455 GTACACTTAC TAAGATCAGG AAAAGATGCA AGGAATGGGG CCTGGGGTAG AAAATGTTTG 15717 .......... .......... .......... .......... .......... .......... 455 ATGTAAGACT AGCACCTTTA TCTCATTTTC ATTTAAATAT TCAACATAGT TTCCTGATGC 15777 .......... .......... .......... .......... .......... .......... 455 ATCAAAATAA CCTTCTTCTC TCTCTTTATT CAGATTAAAA G 15818 | |||| | .......... .......... .......... ...CTCAAAA G 463 hqPGS_C04HBa0127E11.1+_SGN-U334277- (15058 15176) ******************************************************************************** EST sequence 42 -strand 1842 n (File: SGN-U317986-) 1 TTTTTTTTTT TTTTTTTTTT GGCTTAAAAT AAGTTTTTTT TAACTTAAAA TAAACCATTT 61 TGAGTATTGT CAAACAGTTA AATAAGTTAA AAAAAACTAT TTTGAGTATT GCCAAACAGT 121 TAAATAAGTC AAAAACCAGC TTTTAAGCTG AGCCAAACAG GCTCTAAGTA TCTCTGCTTA 181 AAATAACTGT GACATCTTTG CTTTTCTGGG AGTTTGAAAC CCAAAATCAG GTATCCTCAG 241 TCCTTTATCT GCCAATTGAT GCTAGTCAAG AAGACTTCAT GAATTTTCAG CATCCATCCG 301 TTCAATCACA CGACGTGCTT CTTCCTCTGT ACCAGGGACG ACATTCCTAA CTCGTGCACC 361 ATTTTTCAGT GAATCTTGTT GGACAGTGAA AGTGAAATAG AAATTGTTTG AAACCTCGCT 421 AGACCGCAAC TCAGGTCTCA TGACATGAGC TACCACTTCT ACATTGATCA GAGGCTTAGA 481 TAAATTCTCT AGTTCTGTGT ACAAAACACA TGATTTGAGG CGGAGGAAAT TTCCAACATC 541 AACAGGTTTC AAGAAATCAA CATGATCAAC TTCCACAAAG CAAGGTGCAC TGCCTGCAAA 601 TGCATAAGCT GTTGCATAAG CCAGCTCAAA AGCTCTCCGC ATTAAGAATC CTCCAAAGAT 661 TCGACCATGG ATATTTCGCT GCTGTGGCTG GCAAATCAAA GAGTTCTGAA GACATGTATC 721 TTTTATTAAA ATGCTGTCTC TATCTGCTAA AGCAGGCATA TCGCAAAAGA TTCGGCTCTC 781 AGCCAACAAT TCGTTTAGCC TATTCACTTC CTCACCCTGA ATTTCCTTCT TCCGTTCTCC 841 CCTTTTAACC TTTCTCATTT TGTTTCTTTC TTCAGCTTCT TCCCAGAGAA GCTTTTCTGT 901 TTCAGTTTTG GGAGATATCT GATTAATTGG AGCTGATTTT CCGGTCTTAG AATCTCGGGC 961 CACAAAAGTG AAGTTTGCAG TTAGAGCTAA TGACTCCGAT GTACTGGATA CTTCTGGTGA 1021 AGATTGCATT ACTTCTAGTT GAATCTCCAT AGATGAACGA CCAACCCATG TAACAGCACC 1081 CTCTATTTTC AGATCAGTAT CAACACGAAT AGGTTTCTTT AAAAGCATCT TGTCCACAGA 1141 AGCAGTAACT AGTATCAAGG GCCTAGTAGT ACCATCATTA CTGGAACAAT GCTTAAAGGA 1201 TATAGTTCCT GCCAAAGCAT CAAGGTCTTC CAGCAACTTC CCCATCCTAA TCTCATTCCA 1261 GGGGTTCCTA TACTGCTCTC TCAGCACATA ATCAGAAGAG AATTTGTAAA GAACACTAGT 1321 CCTACTCTTA GATGGGGTTT TAGCAATCAA ATCATTTTGT GGAGTAGGAT CAATTGTGGC 1381 ATCTGAAAAC CTCTCAAAAA TACTTGATCT TGCTTCCCAC AATGCATTTG TCACAGGCGA 1441 ATGGTACATA CCTGGCCACA AACTGATCGG CTTTCTAATT GAAGAACCTG CATCAATTGT 1501 AGGAGAGCTA TCTAGCGGTG ACCTAGCAGT AGCCACAACA GGGATCGGAT CACTAAAAGT 1561 ATCGTTTGCT CCAACTGAAA ATTGCTTTGT TTGAGAAAAA GGAGACCGAG ACACATTCTG 1621 ATCGCAAAAT GCAGTGTTGA AAATGGGTTT TTCATCTTTG GCTAAACCAA GCAAGAAATG 1681 GGGTTTTCTA TAAAAATTGG GACACCTTTT GATCAAAAAA TGCAATCTTG ATGATGGGTT 1741 ACCCATTCTT GCTGTAAGGA ATATGGATTT TGAGATGAAA AGTTCAATAT GAGAGTTGTT 1801 ATTGAGTTCT GGAGATGAAA CTGCACCAAA AAGATAACTT TT Predicted gene structure (within gDNA segment 14264 to 29266): Exon 1 15067 15134 ( 68 n); cDNA 83 150 ( 68 n); score: 0.853 Intron 1 15135 15810 ( 676 n); Pd: 0.000 (s: 0.90), Pa: 0.672 (s: 0) Exon 2 15811 15818 ( 8 n); cDNA 151 158 ( 8 n); score: 0.500 Intron 2 15819 18901 (3083 n); Pd: 0.743 (s: 0), Pa: 0.914 (s: 0) Exon 3 18902 18914 ( 13 n); cDNA 159 171 ( 13 n); score: 0.769 Intron 3 18915 27814 (8900 n); Pd: 0.000 (s: 0), Pa: 0.866 (s: 0) Exon 4 27815 27824 ( 10 n); cDNA 172 181 ( 10 n); score: 0.600 Intron 4 27825 27990 ( 166 n); Pd: 0.862 (s: 0), Pa: 0.670 (s: 0) Exon 5 27991 27999 ( 9 n); cDNA 182 188 ( 7 n); score: 0.667 Intron 5 28000 29249 (1250 n); Pd: 0.139 (s: 0), Pa: 0.214 (s: 0) Exon 6 29250 29262 ( 13 n); cDNA 189 200 ( 12 n); score: 0.769 PPA cDNA 20 1 MATCH C04HBa0127E11.1+ SGN-U317986- 0.853 121 0.066 C PGS_C04HBa0127E11.1+_SGN-U317986- (15067 15134,15811 15818,18902 18914,27815 27824,27991 27999,29250 29262) Alignment (genomic DNA sequence = upper lines): TAACTTAAAA TAAGTTGTTT TGAGTATTGT CAAACAGCTA AATAAGTCAA AAACCAGCTT 15126 ||| |||||| || | ||| ||||||||| ||||||| || |||||||||| |||||||||| TAAGTTAAAA AAAACTATTT TGAGTATTGC CAAACAGTTA AATAAGTCAA AAACCAGCTT 142 TTAAGTCAGT TTGACCAGCT TTTAAGCTGA GCCAAACAGG CTCTAAATCT TAACAGCTCA 15186 ||||| TTAAGCTG.. .......... .......... .......... .......... .......... 150 ACCATAGCCT CTCCATTTCT CATTTGAAAA CAACAGCAAA AAGCCACAAA GAACTTTGCT 15246 .......... .......... .......... .......... .......... .......... 150 TGGACAATGA AGAAAATATA ATATGCAAGC AACAGCAAAC ACAGTATCAA TATGCAACCA 15306 .......... .......... .......... .......... .......... .......... 150 TTAGTACGAG ATAATACATG AGGGAAAAGC AGATAAGATT CATGTTGAAA CCACCACTGA 15366 .......... .......... .......... .......... .......... .......... 150 AGGAACCAGA AATGAGAGCA CATAAAATAT TTAGAAGATA TTAAAAAAAA TCTACAAGCA 15426 .......... .......... .......... .......... .......... .......... 150 AATGCCATCA ACAGTATTTA TCCATTAAAA AAAATTAACA AAAAAAAACT AGAAAACACG 15486 .......... .......... .......... .......... .......... .......... 150 AGGTGGGAAT AGTTACTGTT TCTCCTGGTT CGAGCACATC AGCAATTCGC CTCTTCATCT 15546 .......... .......... .......... .......... .......... .......... 150 TTCCTAGTTG TTCTGATGTA AGGTCTTGAA TCTCATCTTC ATTTGATATC TTGATAGCTT 15606 .......... .......... .......... .......... .......... .......... 150 TCTTCCCAGA ATATGTTTTC TCAGTATCAA CACTATCAAG CCATGCATCC TGTACACTTA 15666 .......... .......... .......... .......... .......... .......... 150 CTAAGATCAG GAAAAGATGC AAGGAATGGG GCCTGGGGTA GAAAATGTTT GATGTAAGAC 15726 .......... .......... .......... .......... .......... .......... 150 TAGCACCTTT ATCTCATTTT CATTTAAATA TTCAACATAG TTTCCTGATG CATCAAAATA 15786 .......... .......... .......... .......... .......... .......... 150 ACCTTCTTCT CTCTCTTTAT TCAGATTAAA AGGTTCTATT GCAATCCCAT CATCAATGAA 15846 | || | .......... .......... ....AGCCAA AC........ .......... .......... 158 TGTTTCATTT TCCTGCAACC AGAGATATTC CATTAGTTAC ACCAGAAAGG AATACAAGAA 15906 .......... .......... .......... .......... .......... .......... 158 ATACAAAGTT TAGCCATAGA GCAATTAGAA TATGCAAAAT TTGACATTAA TGATAATTCC 15966 .......... .......... .......... .......... .......... .......... 158 AAGTACTTCA GTTTGTTTAT AGGCTGGAGA GCCGAACCAA AGAACAAATA ACAATATAAT 16026 .......... .......... .......... .......... .......... .......... 158 TCCACGAATT TAATGTGACA GCACATGAAG CAGAAATAAT GAAATTTAAT TAACATTTAT 16086 .......... .......... .......... .......... .......... .......... 158 GTTTTGAGAG TTTAAGTAAA AGAAATAAAA TGCTCGGAAA ATAAAACAGA AGGAAACAAA 16146 .......... .......... .......... .......... .......... .......... 158 GGAAGTAAAG CTACAAATTT TATTTCCATT GTTTCATTGG CGAGGGAATT ATGAAGAACA 16206 .......... .......... .......... .......... .......... .......... 158 GGAAAAATTT ATTCAAGGGA ACTCAGATAA ATTCTTTTCT TCTTTGTAAT CCTATTCTCA 16266 .......... .......... .......... .......... .......... .......... 158 TCTCTATGCA AATTAAAGTA CGTGCAGAAT TTAAATCTTA CCCATTTTCT ATTTGTAAAG 16326 .......... .......... .......... .......... .......... .......... 158 TTCAAAAACC CACAGTTCAT AAAGTCCAAG GAAGAACTCT ACATAAGATA GAATGAGACA 16386 .......... .......... .......... .......... .......... .......... 158 AGCCTATTGG ACACAGAAAC AACGATTCAT GCTCAGTGAA TTTAAAAGTG AAAAGTGCAA 16446 .......... .......... .......... .......... .......... .......... 158 AAAAAGCGTC TGCGAGGCTT GAAATGAATA GGAGAGAAGT AAGGCACATG CTTTATTAAG 16506 .......... .......... .......... .......... .......... .......... 158 TGAAGCGCAC AATTATTTGA TGATGATTCC TTTACACATG GCATGCAACC TTATGCTATT 16566 .......... .......... .......... .......... .......... .......... 158 CCTTTTGATG AGCCGCTATA TGCTAAGAAA AAACACCATT CTGTCTCCTT GACCTTTGTT 16626 .......... .......... .......... .......... .......... .......... 158 TCAAGAGCAT AAGGATTGAT ATGTATTAGT GGGGTTTTTA AAATGAAGTT ACAGATGGTC 16686 .......... .......... .......... .......... .......... .......... 158 CCTATTTTGC TTACGTTACT ACTTACTACT TGGGGAATAT AATTAGCAAT CATGATTATT 16746 .......... .......... .......... .......... .......... .......... 158 TATGGTTTTC AATTGTGCAT GAGTACCCAT ATCTCAGCTC TTTTAAAGAA GATTACCCAT 16806 .......... .......... .......... .......... .......... .......... 158 ATCTAAGTTG TTCTAGCTAA ACACGCAGCA CAAATCATGC CAAGCCCCAA AAAAGTTTGT 16866 .......... .......... .......... .......... .......... .......... 158 AATAATCCTA GTATCACTTC CTTATCAAGA GATATGAAGT AGACATCAGA TATCCACAAA 16926 .......... .......... .......... .......... .......... .......... 158 GTACCTAACT ACAATCAAAC AATTATGGAA TAACAGATAT TGGAAGGACA AACCTCATAT 16986 .......... .......... .......... .......... .......... .......... 158 TCCACTTCTG CCCGCGATAT GTCAGCTATT TCACCTTCGT TTTCTTCATC AAGGAGTTCC 17046 .......... .......... .......... .......... .......... .......... 158 GCTGTTATTT GATTCCGCCG TGCCGAACGC TCTTTGGCTG CATTGCGAGG ATCTGTCCGC 17106 .......... .......... .......... .......... .......... .......... 158 CCACTAGGTT TATCTTCACA CCCATCAATC GTGGTATCGC CCTGCTTTGC CTTCTTACCC 17166 .......... .......... .......... .......... .......... .......... 158 TTTGGGAACC TTACACGCTT CTGCCTGTGA TGTTGAGGAA GAAAGCAACA TGTCAATGCA 17226 .......... .......... .......... .......... .......... .......... 158 AACATCCTTA AAATCCAGCA TCATAAATGA AACTATTTTG AACCCAACAA ATGAGGTTGT 17286 .......... .......... .......... .......... .......... .......... 158 CATAGAGCAT GGCAGACGTC ACATGGAAAA AAAAAACGCT ATTTGAAGTT GTATTACTTG 17346 .......... .......... .......... .......... .......... .......... 158 CTATTGCTGT CTCATGAAAC ACATTATCTT TACAAGGAAA ATAACAGTAG GTAAAAAAGA 17406 .......... .......... .......... .......... .......... .......... 158 TCTATTTTTT CTCGTACTAA ACTCATGACA GTCTCAACAA CAAAATACAA CCTCTAATCT 17466 .......... .......... .......... .......... .......... .......... 158 GAAAAAGAAA GCAGTCTACT TTATCTTCAA AGACAAACTA TTGAGCACTG GAATGAAATG 17526 .......... .......... .......... .......... .......... .......... 158 ATCACAGTTA GAGTAAATAG ATATAGAGAT TACATATAAC TAATCCAATT AGTTTGGGCA 17586 .......... .......... .......... .......... .......... .......... 158 TGAGGCATAG TCACTGTATA ATTCCTTAAA TCTCCAACAA ATAAAGTATT TTCTTGCATA 17646 .......... .......... .......... .......... .......... .......... 158 GTTCTCTCAA GGCCAAACAC ACCCTTCTTT ATTAGACATT TTCTAGGTAC TAAGAATACA 17706 .......... .......... .......... .......... .......... .......... 158 CAATCCACCC ATTCCCACTA GATTTTTGCT CCAGGTTCAC ATCATATATG AAATCAACGG 17766 .......... .......... .......... .......... .......... .......... 158 TAATTCAGAT TAGGAAAAAA CAAGCTAATA GAATCTGGGC GCATTTGCAG AATAACAAAA 17826 .......... .......... .......... .......... .......... .......... 158 ATAGATAGCA GCTGAAAGAA AGCAAATCCA AGTACATACT CCTGAACTCC TCTGGGAAGC 17886 .......... .......... .......... .......... .......... .......... 158 TCCTAAAATT CTTACAATAA TGACATAATA AATCAATCCC AGCAGAAGCA AAAAATACTA 17946 .......... .......... .......... .......... .......... .......... 158 TGTGTATTCT CCCTATCTAT TTAAGCCTCA ATTGACACAG TAAAGTGATA TCTATGTGGA 18006 .......... .......... .......... .......... .......... .......... 158 TGGGAGGTAG TAGAGATCCC ATAGGATAGA ATTAATTGAG TTATAAAAAC AAAAATGAGC 18066 .......... .......... .......... .......... .......... .......... 158 TTCCTTACTT ATTTATCTAT TTTTATCTTT CTATTGATAC AAAATACTCC CCCTAGTTCA 18126 .......... .......... .......... .......... .......... .......... 158 CTTCTTTCGT TTTTTAGACA ACTGTAGTTA CTAGACCAGC TTATGCGCAC CTTAACTAAT 18186 .......... .......... .......... .......... .......... .......... 158 TACATAGATA TCTGTCGCTC CCCACCAAAA CAGCTATAAA GTAACTCTAT CCTCAAGGCT 18246 .......... .......... .......... .......... .......... .......... 158 AGGACAGGTA GAAAGAAATC ACTTTTCTTC TCTATGTTGG AATTTGAACC TTAGACCTCA 18306 .......... .......... .......... .......... .......... .......... 158 TGGTTCTCAA CTCACTTCAT TAACCACTAG ATCACACCCT TCCTTATTCA CTTTTTTATG 18366 .......... .......... .......... .......... .......... .......... 158 AAATCAATGT CATTAAATTT CAATGGTAAA ATAAATTGGT TTCCTTTCGC ATTATGTTTT 18426 .......... .......... .......... .......... .......... .......... 158 TATTATGATT GTGGTGTTCA CGCCAGTTTT CCCACACCTC AACTAATTCC ACCTCTCACC 18486 .......... .......... .......... .......... .......... .......... 158 ATTAACAACT ATCAGGTAAC TCTGTCCACC AAAACTAGGA CAAATAGAAA AAAATCATCT 18546 .......... .......... .......... .......... .......... .......... 158 AGCATTTTTG TCTCTACTAG AAATTGAACA TTAGACCTCA TGATGCTCAA CCCACCTCCC 18606 .......... .......... .......... .......... .......... .......... 158 TTGACCACTA AGCCACACCC TTTGAGAAGT TTTTTGTTAA TTTTAATGAC CTTGGTATCC 18666 .......... .......... .......... .......... .......... .......... 158 AAATACATTG GATACGTCCC ACCTCCCACC AAATAACTTT GTTGTCTTCC CTGAGTTTTA 18726 .......... .......... .......... .......... .......... .......... 158 TAAGACCTCA GAATTCTCAA CCACTTCATT AATCACTAAG CCACACCCTT GGGGTTTCAC 18786 .......... .......... .......... .......... .......... .......... 158 CACTATGTTT CAAACATATA CAAAATATTA TTTACTAAGA AATCACAAAC TTACAGCTCA 18846 .......... .......... .......... .......... .......... .......... 158 AATTTTATAT TCCGAAATCA ATATAACAAA TGAATATGAG CTTTCATCTG TGCAGAATCC 18906 | | .......... .......... .......... .......... .......... .....AGGCT 163 CTAAGTATGT TCAGAATAAA TTAGGGCACA AAATCACATG AAATTTTTCA AAAATAAAAA 18966 |||||||| CTAAGTAT.. .......... .......... .......... .......... .......... 171 ATAAAAAGAA AGAAGGAAGG AAATAGTTAC TCTGGAGCTT TATTGGAGTC ATCGTCCTCA 19026 .......... .......... .......... .......... .......... .......... 171 ACGAAGGGAC GTTTGGCACG TCGCGATGAA CCTTCTTCCA TGGCGTAATC GGCAATTGAT 19086 .......... .......... .......... .......... .......... .......... 171 ATGAAGGATT CAGAAAGGAA AAAAAATGAA GGGGCAAAGT GAAGAGAGAG CGGTGGTACT 19146 .......... .......... .......... .......... .......... .......... 171 GGTAAACATC AAAAAAAATA ATAATAATAA ATTCTATCTT ACAAACTATA ATACCTTTTT 19206 .......... .......... .......... .......... .......... .......... 171 TAAATTGATA AATATCTAAA ATTAACATTA CCAATATTAA TCTTATTGGA TAAATTCAAA 19266 .......... .......... .......... .......... .......... .......... 171 TAAGTTATTG ATAATATAGA AAAATAATAT TATAAATTAT TAGTTGAGAA ATGTGACAAC 19326 .......... .......... .......... .......... .......... .......... 171 ACAAAAAATA TACTAATAGC TGAGATAATT TGTAAAATAA AATTATCATT TTACTTTATT 19386 .......... .......... .......... .......... .......... .......... 171 ATGGATATTC ATGTCTACTA GTCATTTTTA TCATTAATTA ATATTTAGGA TGATGATTAT 19446 .......... .......... .......... .......... .......... .......... 171 TATTATTATT ATTATATATA TATATATATA TATATATATA TATATATAAA AGAGATAAAA 19506 .......... .......... .......... .......... .......... .......... 171 ATGTAAGATC AAATTGTTTC ATAAATATAT AGAATAAATT ACAATTTACA AATATTAATA 19566 .......... .......... .......... .......... .......... .......... 171 TTTTTTTAAT TTAATCACTC TGTCACAGTT TTGCATAGAT AAAAATGATC GATAAATTAT 19626 .......... .......... .......... .......... .......... .......... 171 TTCGTTCGAC ATTTGCACAA GGATTTTACT TTTATAAAAA TGATATTTCA AAAAAATTGT 19686 .......... .......... .......... .......... .......... .......... 171 ATAACTAATT ATTTTCATAA ATAAATTACT TATGTTGAAT AGTTTAATTT GGTTATTAGT 19746 .......... .......... .......... .......... .......... .......... 171 TCACTAACTC CTTGTTATAA AGATACAATT TATTTCATTT TAATGGTATT ATTGAATAAG 19806 .......... .......... .......... .......... .......... .......... 171 TAGTATTATA GGATTGTTTT GGTATTTCAA TTTTTATTTT TTTTTTGTTT AACTCAATAT 19866 .......... .......... .......... .......... .......... .......... 171 TATAGGATTA TTTGGTATTT CAAATATAAT TTTTTGTTTA AGTCAATATT CAAATTTTGT 19926 .......... .......... .......... .......... .......... .......... 171 GTATAAAAAG TACATAAATT TGGTATAAAA TATGTATATA ACTATATAAA ATTTGTATGA 19986 .......... .......... .......... .......... .......... .......... 171 AGCTCATGTT AGATACTATT GCATACAACA TTCATATCAA ACTAAATACA ACTACAATAC 20046 .......... .......... .......... .......... .......... .......... 171 CAACAAATGA TATGTTGCAG TAGATGAGTT ACTCCTGTCG GGTTTCAGAT TCGAATCATC 20106 .......... .......... .......... .......... .......... .......... 171 AGTATGTAAA AATTCTTGAT AGAGTGTGTT TTCCCTCAAA TGACCCTACG TGACATGAAT 20166 .......... .......... .......... .......... .......... .......... 171 TTGGGAAAGT CAAGCTTCAG TGGATACTTA ACACTTAGTG AGAGACTAGA AAAAAAAATA 20226 .......... .......... .......... .......... .......... .......... 171 CAACTATTAT AAATATACCA AACTTAAAAA ATAATTTACT CATAACTCAT CCGCCATATT 20286 .......... .......... .......... .......... .......... .......... 171 ATGATTATCA TTTGATTTTT GATACAATTG TATGTAATTT TGAATTTAAA CGAAGTAAAA 20346 .......... .......... .......... .......... .......... .......... 171 TCAAAATTTC AATTCGAAAC TAATTCGAAT TTTACCCAAA TAATCTCAAA TTTTATATTA 20406 .......... .......... .......... .......... .......... .......... 171 TTAGTCTCCT CGAAATTCCA TTTCTTTGGA GAAATCACCA ATTGAAACGA AAGTTTTCCT 20466 .......... .......... .......... .......... .......... .......... 171 ATAGATTCCC CAAACAAGGA AAATTAAAAA GAAATCCTTA ATTATAATCT GATTTCGTTC 20526 .......... .......... .......... .......... .......... .......... 171 GATAAAACTT TTAAAATAAT GTTTGTTCTA GGAAGACTTG TTGTTGAGTT TCTTTCTGAA 20586 .......... .......... .......... .......... .......... .......... 171 ATAGTCTATC TGCCTCCACG AGGTACTCGT ACGATCTACA TACGCTTTAG CTTTTAATTT 20646 .......... .......... .......... .......... .......... .......... 171 TTGTCTAAAG ACACAACTTG TGTCACTGAA TTTATAAAGT ATAACTCGTG TCATGCAATT 20706 .......... .......... .......... .......... .......... .......... 171 TTAAATTCTT GCCTCAACAC TTACCAGAGA ATATATACTT TTCTTTACTA TTAACCTTAA 20766 .......... .......... .......... .......... .......... .......... 171 CTCTTTCTGC TTTAAGACTT TTTCTAATGT TGGATTTTCT TAAGCTTTAA ATACTCATTT 20826 .......... .......... .......... .......... .......... .......... 171 CCATCATAAC AATTATCAAA CTCTCAATCT ACTGCTATAC TTGAGACTTA CAACTTTGAG 20886 .......... .......... .......... .......... .......... .......... 171 GCTGGTAAAT GTGCTAGTCG TCTCAAGGCT TGCGTTTGCA TATATAGGAA GGAGAAGAAA 20946 .......... .......... .......... .......... .......... .......... 171 TTATAGTATG TGGCAGAGGA GATTCAATCA CTCAAGCAAC GAATCATGGA TATCTCTCGC 21006 .......... .......... .......... .......... .......... .......... 171 AAACGAGAGA CTTATCGTAT TACAAATATC AATTCAGGAG ATCAAGGGCC AAGTAATCAG 21066 .......... .......... .......... .......... .......... .......... 171 GTTACAATAT TGAGGAGAAC TACCTCATAT GTGGATGACC GCGGTTACAT TTTTGTTGGA 21126 .......... .......... .......... .......... .......... .......... 171 TTTCAGGAAT GTTGTACAAA CATTGCTAGT TGAAATTCTC AAACCAGAGC CTTGTCGAAG 21186 .......... .......... .......... .......... .......... .......... 171 TGTCCTCTGC ATTTATGGCA TGGGCGGTGT AGGCAAGACC ACTCTTGCGA GAAACCTCTA 21246 .......... .......... .......... .......... .......... .......... 171 CAGAAGTCCT AGTATATAGT CAATACCTTC CCTACACGTG TGTCGATATG TGTTTCTCAA 21306 .......... .......... .......... .......... .......... .......... 171 GAGTGCAACA CAATGGATCT TCTTAAGACT ATCATAAAAT CCATCCAAGT TTGCACCAAC 21366 .......... .......... .......... .......... .......... .......... 171 GAAACTCTTG ATTTGTTGGA AAGGATGGCA GAAAGAGATC TAGAAATTTA CCTTCGTAAG 21426 .......... .......... .......... .......... .......... .......... 171 CTATTAACAA AACACAAATA CCTTTTGGTG GTTGATGGTG TGTGGCTAAT AGAAGCATGG 21486 .......... .......... .......... .......... .......... .......... 171 AAGAGTTTGA AAAGAGCATT TCCGGATAAC AATAATGGCA GCAGAGTTGT TATTACCACA 21546 .......... .......... .......... .......... .......... .......... 171 CGCAAAGTGG ATGTCGCTGA AAGAGCAGAC GACAGAGGTT TTGTCCATGA ACTTCGTTTC 21606 .......... .......... .......... .......... .......... .......... 171 CTAAGCCAAG AAGAAAGTTG GGATTCTTTT GTAGGAAACT ACTTGATGTT CGATCAATGG 21666 .......... .......... .......... .......... .......... .......... 171 TTACAGCAAT GGAAAGTCTA GCTAAGGATA TGGTGGAAAA GTGTAGAGGC TTACCTCTTG 21726 .......... .......... .......... .......... .......... .......... 171 CAATTGTTGT ATTGAGCGGA TTGTTGTTCA TCTTGTATTC CAAACATACT TAGAACAAAA 21786 .......... .......... .......... .......... .......... .......... 171 CTTTGAACAT CTTTGTAAGA AAACAAAGTT TAAGAACATT TTCACAACTA GAAAATTAAA 21846 .......... .......... .......... .......... .......... .......... 171 ACTAGTAGCG AAACTAGAAT CAGAAACAGA TTTTAAAAAA AATATACGAA ATATTTTTCT 21906 .......... .......... .......... .......... .......... .......... 171 TAAAGAGGAA TTGTTGTTAA TATGTGTCTA AAGAATCTTA CTGATTCCAA CAAACTTTGC 21966 .......... .......... .......... .......... .......... .......... 171 AGAAACACGA AGTTACCAAG TTTAATGAAC CAGTGAAGAA TAGAAGAATA GAAGAACTGA 22026 .......... .......... .......... .......... .......... .......... 171 AATTAATTCA CAAATCTAAA ATTTGTAAAA CACGTACCAG AATCTGAAAA AAAATTTAAT 22086 .......... .......... .......... .......... .......... .......... 171 AGGAAAAAGA TCAAGTCCAC TGAATTCACA GTGTCCCCTT AAGGAAATTA TTCCCCTCTA 22146 .......... .......... .......... .......... .......... .......... 171 GTATCCGAGG TTTGATTTGG AATATGACCT CCTAGGGTAA AATGATCTCA ATCACCAGAG 22206 .......... .......... .......... .......... .......... .......... 171 TATAGATACC AAAAACTCCG GTGTCAGCGA ACCACTCAAC GGCAGTAAAG TACACTTAGA 22266 .......... .......... .......... .......... .......... .......... 171 ATACTAAATT TAGTAGTTGA AGAAGAAGTC CATTAATTCT TTTTTTAAAA TGAGAGGAAA 22326 .......... .......... .......... .......... .......... .......... 171 TCCCTCAATT TATAGAAGAC AAAGGGTGGT GCGAAAAGGT TCTTATTGTG CCTTACCGGA 22386 .......... .......... .......... .......... .......... .......... 171 AAGGTCACAA ACCTTTGGAA AAGTCACAAT CTTTCAGAAT GATCGTCACC TTTCATAAAA 22446 .......... .......... .......... .......... .......... .......... 171 CTCACAACTT TCCATAAAAG TCACAATTTT TCATAAAAAT TGCAACTTTT CATAAAAGTC 22506 .......... .......... .......... .......... .......... .......... 171 ACCACTTTTC ATCAAAGTCG CAACATTTCA TAAAAGTCAC AACTCTTCAT AAAAGTCGCA 22566 .......... .......... .......... .......... .......... .......... 171 ACTCTTCATT TTCCATTCAC GCCTTTTTTA AAATCCAACA CGGATTACTT TCGCATAAAA 22626 .......... .......... .......... .......... .......... .......... 171 TGGGGCTAGA CGAATGGCAA AAGGTGAAAG ACTGCCTTTG GAAGAACATT GAAGATGACT 22686 .......... .......... .......... .......... .......... .......... 171 CTATTGAAAT CTCCTATATA CTATCATTGA GCTATAATGA TTTGTCAATT GTGCTCAAGC 22746 .......... .......... .......... .......... .......... .......... 171 AATGTTTTCT GTACTTTGAT ATTTTTCCAG AAGATCAAGT GGTCGATGTT GAGAACATAA 22806 .......... .......... .......... .......... .......... .......... 171 TATGGTTGTG GATGGCCGAG GGTTTCATAC CAAATGGAGA AGAAAGAATG GAGGATGTCG 22866 .......... .......... .......... .......... .......... .......... 171 CTGAATGCTA CTTGAATGAG CTGATAAGAC GAAGCTTGAT ACAAGTGGTA AATACATCTT 22926 .......... .......... .......... .......... .......... .......... 171 GAGAAAAAGT TACTTTATGC AGGGTTCATG ATTTACTTCG TGATCTTGCA ATACAAAAGG 22986 .......... .......... .......... .......... .......... .......... 171 CATCGGAGAT AAACTTCTTT AACATTTATG ATCCAAGAAA TCACTCCATA TCCTCTTCAT 23046 .......... .......... .......... .......... .......... .......... 171 GTATTAGACA TGCCATTCAT AGTCAAGGAA AAAGGTACCT CTAACCTGAT CTTTCTAATT 23106 .......... .......... .......... .......... .......... .......... 171 TAAAGTTGAG GTCAATTATG TTCTTCGATC CAGATTTTCA TAATCTGTTT GAACTTACAG 23166 .......... .......... .......... .......... .......... .......... 171 ATGTGTTCCG ACGTTTATAT GTGTTGTAAA TTGGCAACCT CAAGAATCTA CAGACACTTT 23226 .......... .......... .......... .......... .......... .......... 171 GTGTTGTAAA TGAAACTGGA CGCTTATACC AACTACCCCA CGAGACAGCT GACCTAATAA 23286 .......... .......... .......... .......... .......... .......... 171 ATCTAAGACA TTTAGTTGCT CGGTATTGAG AACCTCTGGT ACGTATAAAC AAACTCACTA 23346 .......... .......... .......... .......... .......... .......... 171 GTCTTCATGT TCTTAAAGAC ATCTCTTGTG ATCAGTGGGA AGATATTGAC CCTGCTTATT 23406 .......... .......... .......... .......... .......... .......... 171 TAATCAATCT TCGAGAATTA ACCATGCGTA ATATTTGGAA TTATTACTCC CTAAACAACA 23466 .......... .......... .......... .......... .......... .......... 171 TTAGCAGCTT GACAAACCTA AGCACTCTCA CATTGTTTTC TGAAGAAGTA ATATCATTCC 23526 .......... .......... .......... .......... .......... .......... 171 CATCCCTTCA ATTTGTTAAT CGTTGTGAAA AGCTCCAGAA ATTGTATTTA AATGGGAGAA 23586 .......... .......... .......... .......... .......... .......... 171 TAGAGAAATT GTCTCCGTTT CCAAATTCCA TCACAATGAT TGTTCTGAGG GACTCAGTAC 23646 .......... .......... .......... .......... .......... .......... 171 TGACAGAAGA TCCGATGCCT ATTTTGGGAA TGTTGCCAAA CCTAAGGAAT CTCGAATTGT 23706 .......... .......... .......... .......... .......... .......... 171 GTAGAGCTTA TGAAGGAGAA GAAATAACGA GCAATGATAA CAGCTTCAGT CAACTAAAGT 23766 .......... .......... .......... .......... .......... .......... 171 TCATTTATCT TGGTTTTCTT TCAAAGCTAG AAAGATGGAA TTTAAGCACA AACGCGATGC 23826 .......... .......... .......... .......... .......... .......... 171 CTCTCATTAA AGCTCTTCAT ATCGATCATT GTCCGAAGCT CATGGAGATT CCAGAGAGAA 23886 .......... .......... .......... .......... .......... .......... 171 TGAAAGGCGT GAAGCGTATT TGATTATAGC AAAGGTAAAT ATACAAACAA ATCCTAATCT 23946 .......... .......... .......... .......... .......... .......... 171 TACATAATTT TGTAGAAAAA TCACCTATAG GAGTTTTTTT TCCAAACATA TATGAAATCT 24006 .......... .......... .......... .......... .......... .......... 171 CGTGTATGAA AACAGCGTAA AATTCATATG AAATATATCT ATCTCACTTA GAGCTTAGAA 24066 .......... .......... .......... .......... .......... .......... 171 TTTCGTTCAT AATTTTTGTG TATGAACAAT ATATAAACTT TGTATAAAGT TCATTACTGA 24126 .......... .......... .......... .......... .......... .......... 171 AAATCTCATA CAACTACAAC AACATTGTAT ACAATATTCA TATCAAACTA AATACAACTA 24186 .......... .......... .......... .......... .......... .......... 171 CAATACCAGC AAAAGATATG TTGCAGACTG CAGTGGATGA AGTTGCTCCT TCCAGGTCTC 24246 .......... .......... .......... .......... .......... .......... 171 GGGTTTAAAT CCTCGGTATG GAAAAATTAT TGGTATGGAG CACTCTCCTC AAATGGCCCC 24306 .......... .......... .......... .......... .......... .......... 171 TACGTGGCGT GAATTCGGGA TAGTCAGGCT CCCACGGATA CCAGACACCA AATGGGAGAT 24366 .......... .......... .......... .......... .......... .......... 171 CAGAAAAAAA TACAACTATG ATAACATAGT AAACTTAAAA ACAATTTACA TATAACTCAT 24426 .......... .......... .......... .......... .......... .......... 171 CCGGCATTAT ATGATTTTTG ATACAATTCG TCTGTAGTTT TGAATTTGAA TGAACTAAAA 24486 .......... .......... .......... .......... .......... .......... 171 TTACAATAAT CTCAAATTTT ATGTGTTTCT CAAGAGTACA ACACAATGAA TCTTCTTAAA 24546 .......... .......... .......... .......... .......... .......... 171 ACTATCATAA AATCCATCCA AGGTTACAAC ACAAAAACTC TAGATTTGTC GGAAAAGATG 24606 .......... .......... .......... .......... .......... .......... 171 GCAGAAAGAG ATCTAGAAAA TCACCTTCGT AAGCTAATAA CAAAACACAA ATACCTTGTG 24666 .......... .......... .......... .......... .......... .......... 171 GTGATTGATG ATATGTGGCA GCGAGAAGCG TGGAAGAGTT TGAAAAGAGC ATTCTCGGAT 24726 .......... .......... .......... .......... .......... .......... 171 AGCAATAATG CCAGCAGAGT TATTATTACC ACTCGCAAAG TGGGTGTCGC TGAAAGAGCA 24786 .......... .......... .......... .......... .......... .......... 171 GACAACAGAG GTTTTGTCCA TGAACTTTGT TTCCTAAGAC AAGAAGAAAG TTGGGAACTC 24846 .......... .......... .......... .......... .......... .......... 171 TTTTGTAGGA AACTAGTTGA TGTTCGAGCA ATGATTCCAG CGATGGTAAG TCTAGTTAAG 24906 .......... .......... .......... .......... .......... .......... 171 GATATGATGG AAACTATAGA GGCCTACCTC TTGCAATTGT TGTATTGAGT GGACTACTTT 24966 .......... .......... .......... .......... .......... .......... 171 AGCATGAAAG GGGACAAGAC GAATGGCAAA AAGTTAAAGA CTGCCTTTGG AAGGACATTG 25026 .......... .......... .......... .......... .......... .......... 171 AAGAAGACTC TATTGAAATC TCCTACATAC TATCATTAAG CTTCAACGAT TTTTGTCAGC 25086 .......... .......... .......... .......... .......... .......... 171 TACGCTCAAG CGGTATTTTC TGTACTTTGG TATTTTTCCA GAAGATCAAG TGGTCGAGGC 25146 .......... .......... .......... .......... .......... .......... 171 CAATAACATA ATACGGATGT GGATGGCAGA GGGTTTCACC ATACCAAGAG GAGAAGAAAG 25206 .......... .......... .......... .......... .......... .......... 171 AATGGAAAAT GTCGCTGAAG GCTTGTTGAA TGAGCTGATA AGACGAAGCT TGGTTCAAGT 25266 .......... .......... .......... .......... .......... .......... 171 GGCTAAAACA TTTTGGAAAA AAGTTACTGA AAATGTAGGG TTCATGATTT ACTCCGTGAT 25326 .......... .......... .......... .......... .......... .......... 171 CTTGCGATAT AAAAGGCATC CGACATAAAC CTCTTTGACA TTTATCATCC AACCATTCTT 25386 .......... .......... .......... .......... .......... .......... 171 AGTCAAGGAG AAAGGTACCA CTCACTTGAT CTTTCTAATT TGAAGTTGAG GTCAATTATG 25446 .......... .......... .......... .......... .......... .......... 171 TTCTTCGATC CAAATATTTG TAATGTGTTC CAACATATAG ATGTGTTTTG ATATCTATAT 25506 .......... .......... .......... .......... .......... .......... 171 GTGTTGTACT TGGAAATTAA GAAGGTGTTA TACCTTTGTG TTAATATTTC TAGAGAAGAA 25566 .......... .......... .......... .......... .......... .......... 171 GTTGTACATG AAGACATTCA AGTTCATCAA CTTGGCTTCT GCAACACTTG GATTGTTTCA 25626 .......... .......... .......... .......... .......... .......... 171 ACTTTCTCCT GTTTTTTTTT TTTTTTTTTT GCTTGTTTTT AGTGTGGGGA ATTGGTTCAA 25686 .......... .......... .......... .......... .......... .......... 171 ACAATTATTT TTTTTGGGAT TCTATTCTAA AATGATTTTG TGATGATTTA ATTAAGGAAA 25746 .......... .......... .......... .......... .......... .......... 171 AAAAGGCTCA AATATGTCGT CAAACTATTA TAAACGACTC ATTCATGTCA TTCGCCATTA 25806 .......... .......... .......... .......... .......... .......... 171 CAAAACAGGT TTCATCTTAT GCAACTCTTG CAAAAACAGC TGAATCTAAG AAGTCGTTAA 25866 .......... .......... .......... .......... .......... .......... 171 ACTTGAACAT TAACAAAACT CATTTTCGCC ATCGGTCGTT GAAAGTTTGA TTCATCTATG 25926 .......... .......... .......... .......... .......... .......... 171 TCATTTTACC TAACAGGATT CTGATGTCAT CTTCTTGAAC TTTTGATAAA AAATGATCGT 25986 .......... .......... .......... .......... .......... .......... 171 TCAAGTTTCA TAAGCTCCAA AAATACTAAA GCTCACACAA CAATCAACGA ACGACCAGGT 26046 .......... .......... .......... .......... .......... .......... 171 GATCGATCTG TCAGTCTCAG CAAGTCATAA ATGACTTGGG ATCGCTATAG GAATGCTCTA 26106 .......... .......... .......... .......... .......... .......... 171 AACGATGCAC AGAAGATAAA ATACTAAAAA TGACAAGAAG GGTCATTACA AAATCACATG 26166 .......... .......... .......... .......... .......... .......... 171 AATAAGTCGT TTCTCAAACG AAATTGATAT AGAAGAAACA AACTTTTAAA TTTTGGTGAC 26226 .......... .......... .......... .......... .......... .......... 171 ACTAAATTAT GGATCAGTAA ATTTTATTAA AGGGAATAAA ATTGTCACTA AAGCTTTGAA 26286 .......... .......... .......... .......... .......... .......... 171 GGGTATTTTC TTTCATATAA ATTTTATGCA ACTACAACAA CATACAACAC AATTTTTATA 26346 .......... .......... .......... .......... .......... .......... 171 TAACTCATCA ATCATTATAC AATTATCAAA TTACTTTAAT ATAATTTTGA ATTCCAACGA 26406 .......... .......... .......... .......... .......... .......... 171 AATAAAACTA AAATTCAATA CAAAAGTTGC TCAATTTTTA CTAAATAAAT TTCATTTTGA 26466 .......... .......... .......... .......... .......... .......... 171 GAAATCACTA AAAATTAATT TTGAGAACTT GAACTTCAAG TTCTAACAAA ATCTTTTATG 26526 .......... .......... .......... .......... .......... .......... 171 GAATAACCTC CATGGATGAA TTCGAATTAA TTTGTGCTGA CTTATCGAAT ATTTTATATC 26586 .......... .......... .......... .......... .......... .......... 171 TTTCTCTTCA AAGTTACAAA ATGCATCTTC AAATTGAAAA GTCATGCTCC TATTTTTCCC 26646 .......... .......... .......... .......... .......... .......... 171 TATAGATTCC CCAAACAAGG AAAATTATCA TTTAAAGATT AAATTTGGAA TTTCTTATTT 26706 .......... .......... .......... .......... .......... .......... 171 GACTATTAAT AATATAATTT TTTAACCACT ATGAAATTTT TAAAATCATA AATTTTAAAA 26766 .......... .......... .......... .......... .......... .......... 171 ATCTTTCGTT CCTAGTTAAA ATGTCGTAAC TAGTCTTTCC ATAAAACAGA TGTACAATTA 26826 .......... .......... .......... .......... .......... .......... 171 ATTAATTAGC TAATTAAGTG ATTTAGGTGG AGGAACAATT AAACAAACTC TTCTAATCTG 26886 .......... .......... .......... .......... .......... .......... 171 AATATTTAAA TGCCTTTAGT CTAATATGAG ATATCTTTTT AAATAGAGGG AAAAGGGTCT 26946 .......... .......... .......... .......... .......... .......... 171 GATATACCCC TCAACTTTGT CATTTGGAGT TGATATACCC CTCGTTATAA AAGTGGCTCA 27006 .......... .......... .......... .......... .......... .......... 171 TATATGCCCT TACCGTTATA TAAACGGCTC ACATATACCC CTACCGTTAC AAAATGGCTC 27066 .......... .......... .......... .......... .......... .......... 171 ACATATATCC TTCATTTCAC GAAAGCTAAA AAATTAGTTT TAAATTTATA TTTATTACTT 27126 .......... .......... .......... .......... .......... .......... 171 CTAAAAAAAA TTTAAAAATT ATTTAGGGGT ATATATGATT CTTCTATCAA AGTTCAAGGT 27186 .......... .......... .......... .......... .......... .......... 171 ATATTTTAAT TTTTTTTCAT ATATTAATTA TTTTTTGACT TCTTTTATTA TAATTATTTG 27246 .......... .......... .......... .......... .......... .......... 171 AATTTCTTAT TCTTATTTTG TTTTTTCTTT CATTCCTTAG TTTAAAGAAT AAAAAATTAA 27306 .......... .......... .......... .......... .......... .......... 171 ACTATTTTTT TTGTGTGTAT TGTAATTTAA TTTCGTATTT GAAGAAAAAA TTTGGTCATC 27366 .......... .......... .......... .......... .......... .......... 171 TACAATAAGT TTTACAAGAA TATTAGTGAA ACATAAATAA ATTTGATTAT CAAAATAATA 27426 .......... .......... .......... .......... .......... .......... 171 ATTATAAACT AGTCATTGAA ACAAAAAAAA AAGTCAAAGA AAATATGTTT GACGAGGATT 27486 .......... .......... .......... .......... .......... .......... 171 GGGATTATAT TTTTTAGAAA AAAAATAATA AAAATTTAGA TTAAAATTAT TTTTTTTTCA 27546 .......... .......... .......... .......... .......... .......... 171 TTTCCGTTAG AGGAAAAGAG TATATCTGAG TCATTTGTTT ACAAGTAGGG GTATATATGA 27606 .......... .......... .......... .......... .......... .......... 171 GTCACTTTCA TAATAAGGGG TATATCAGCT CTAAATGACA AAGTTGAGGG GTATATCAGA 27666 .......... .......... .......... .......... .......... .......... 171 CCCTTTTCCC TTAAATAAAT AATAGTTTTT GGAAATGTAT AAGGCCAAAA TCATTAGCAC 27726 .......... .......... .......... .......... .......... .......... 171 AAATACCCTA ATTTTGGGGT GAGTTTTAAG CTTCATATAA ATGTGTTTTA ACTTGATCTC 27786 .......... .......... .......... .......... .......... .......... 171 ATTTCACATT TATGCCCTTC AATTTTAGGT CTGCACAGGT AGATACTTAA ACTTGTATAA 27846 | |||| | .......... .......... ........CT CTGCTTAA.. .......... .......... 181 AACTGAACAT GTAGACACGT GAGTCCTACG CGCCATAATA CACACAGGAC ATAAATTGTC 27906 .......... .......... .......... .......... .......... .......... 181 ATGTAGGATA CCACATATGA CGTGCGTGTC TATTTCATCA AATTTATAAA TCAAGTGTCT 27966 .......... .......... .......... .......... .......... .......... 181 ACTTGTGCGC ACTCAAAGTT GCAGGGCATA ACTGCAAGTA TGACATAATA TATAAATATG 28026 ||| ||| .......... .......... ....--AATA ACT....... .......... .......... 188 ACTCTTAACT CGACGTCAGT TGACAATTAT GACATTTAAC TTTAGGTGTG CACAAATAGA 28086 .......... .......... .......... .......... .......... .......... 188 TATTTAAACT TATATAAAGT TGAACAAGTA GACACATTCG TCCTACATGG CACCCTACAT 28146 .......... .......... .......... .......... .......... .......... 188 GGAACTTTTG TGTCCTACAT AGCGTTCTAC GTGTATTATG TCATGTAAGA CATGTGTGTC 28206 .......... .......... .......... .......... .......... .......... 188 TGCTTGTTCA ATTTTATAGA AGTTTAAGTG CTTACTTGTG CACAGTCAAT GTTGTTAATT 28266 .......... .......... .......... .......... .......... .......... 188 GACGTTAAGT TAAGAGTCAT GTTTATATAT TATGACACAA AAATATGTTG ATTAAAATAT 28326 .......... .......... .......... .......... .......... .......... 188 CCTTAGTTAC AATCTAATTT TGATGGACAT AACTTTATAG ATAACGTTTG CCTTGTCGGA 28386 .......... .......... .......... .......... .......... .......... 188 CTTATTGCCA AGAGTCTTTC TGAAACAACC AGTCTATCTT TACGAGATAG TGATAAAATC 28446 .......... .......... .......... .......... .......... .......... 188 GATCGACATA ATATCTTGTG CCTTTAGAGC ATAACTTGTG TCATGCAATT TTAAATTCTT 28506 .......... .......... .......... .......... .......... .......... 188 GCCTTGCACT TAGTAGAGAA TATATACTTC TCTTTATCAT TTACCTCAAC TCTATCAACT 28566 .......... .......... .......... .......... .......... .......... 188 TTCTACTTTT ATTACTTTTT ACTCTGTTGG ATTTTTTATG CTTTAAATAC TCAGTTCCAT 28626 .......... .......... .......... .......... .......... .......... 188 CATAACAATT ATCAAACACT CAAACTACTG CTTCCAATAT TAATTTTTCA CATAGAGACT 28686 .......... .......... .......... .......... .......... .......... 188 TTACCTTTTG CAAACAAAAA AGTGTTAAAT TTCCATACAG CTACCCCTTT TTTCAATCAA 28746 .......... .......... .......... .......... .......... .......... 188 AAGTAATAGT AGTATTCCTA AAGATGACTG ATGCATTTGT GTCATTTGCA GTTCAAAAAT 28806 .......... .......... .......... .......... .......... .......... 188 TGGGTGATTT CCTCGTACAA CAAGTTTCGC TGCGTAAAAA TCTGAGAAAG GAAGTTGACT 28866 .......... .......... .......... .......... .......... .......... 188 CGCTGAGAAA TGAGCTACTC TTCATGCAGT CTTTCCTCAG AGAGGCAGAA CAAAAGCAAA 28926 .......... .......... .......... .......... .......... .......... 188 GTGGTGATCA AAGAGTTCAA CAGTGGGTGT TTGAGATCAA CGCTATTGCT AATGACGCTG 28986 .......... .......... .......... .......... .......... .......... 188 TTGCTATACT CGAGAGTTTC AGCTTCGAGG CTGGTAAAGG TGATGATGAT AGATTTGTTA 29046 .......... .......... .......... .......... .......... .......... 188 GTCGTCTCAA GGCTTGCGCT TGCATATGTA GGAAGGAGAA GAAATTATAC AATGTAGCTG 29106 .......... .......... .......... .......... .......... .......... 188 AGGAGATCCA ATCACTCAAG CAACGAATCA TGGATATCTC TCGCAAACGA GAGACTTATG 29166 .......... .......... .......... .......... .......... .......... 188 GTATTACAAA TATCAATTCA GGAGAAGGGA CAAGTAATCA GGTTAGAACA ATGAGGAGAA 29226 .......... .......... .......... .......... .......... .......... 188 CTACCTCATA TGTGGATGAG CAGGATAACA TTTTTG 29262 | | ||| | |||| .......... .......... ...G-TGACA TCTTTG 200 hqPGS_C04HBa0127E11.1+_SGN-U317986- (15067 15134) ******************************************************************************** EST sequence 13 +strand 858 n (File: SGN-U345977+) 1 CCCCGCGGTG GCGGCCGCTC TAGAACTAGT GGATCCCCCG GGCTGCAGGC AAAAACCAGC 61 TTTTAAGTCA GTTTGACCAG CTTTTAAGCT GAGCCAAACA GGCTCTTAAA ATGTCTGCTT 121 AGATGTGCTA TATATATTTG AGCTTTTTTT GAAGTAGTAT ATTATCCTTA AGTTCAACAT 181 AAAAATACAT GCTTTAACAT AGCACATATA GTTAATCAAA AGACGAAATG ATGAATAATT 241 TTGCGAATTT GATTATTCAC AAGAAAAGGG ATAGTTCAAA GTGTACATTT CAAGTAATTG 301 AAGATATCAT AAAGACTAAA ATTAGAAGAA CTAATAATTG AGGGATCAAA AATGTTATTA 361 CCTTATTAAA ATACTATTCC ATTTTCATAT TAAATTAACT AATTAAGAGT GTTTTATAAT 421 CTAATAAAAC ATGCAATAAT TATTGACGAA ATGTGGTTTT GGTACCTATA ATCTTTCTGA 481 ATATTTGCTC TTATTTTTTC TCTTTTTATT TTTCCATGGA TTAGTATTGG AAGCTTAGGA 541 TCTGGAAATT CAGAAGCTTA TGTGTCTAAT GTTACTGTAA ATGAAGCCAA AATTATCGGT 601 GCCGAAAATG GAGTTAGGAT CAAGACTTGG CANGGAGGAT CTGGACAAGC TAGCAACATC 661 AAAATTCTGA ATGTGGAAAT GCAAGACGTT AAGTTTCCCA TATTATAGAC CAAAACTATT 721 GTGATCGAGT TGGAACCTGT ATTCCACAGT TTTTCAGCAG TTAAAGGGAA AAAAGGTGGG 781 GTTTGAGAAA TTTCAAGGGC ACCAGGTGCC ACCAAAGGTG GGCCTTAAAA TTTGGTTGGC 841 GGCCCAAAAT TTTCCTTT Predicted gene structure (within gDNA segment 14024 to 24500): Exon 1 15114 15171 ( 58 n); cDNA 50 107 ( 58 n); score: 0.983 Intron 1 15172 15707 ( 536 n); Pd: 0.000 (s: 0.98), Pa: 0.000 (s: 0) Exon 2 15708 15719 ( 12 n); cDNA 108 119 ( 12 n); score: 0.833 Intron 2 15720 20066 (4347 n); Pd: 0.979 (s: 0), Pa: 0.686 (s: 0) Exon 3 20067 20073 ( 7 n); cDNA 120 126 ( 7 n); score: 0.857 Intron 3 20074 20557 ( 484 n); Pd: 0.000 (s: 0), Pa: 0.936 (s: 0.60) Exon 4 20558 20608 ( 51 n); cDNA 127 174 ( 48 n); score: 0.588 Intron 4 20609 21968 (1360 n); Pd: 0.963 (s: 0.58), Pa: 0.993 (s: 0) Exon 5 21969 21990 ( 22 n); cDNA 175 196 ( 22 n); score: 0.591 Intron 5 21991 23053 (1063 n); Pd: 0.000 (s: 0), Pa: 0.110 (s: 0) Exon 6 23054 23080 ( 27 n); cDNA 197 222 ( 26 n); score: 0.667 Intron 6 23081 23724 ( 644 n); Pd: 0.990 (s: 0), Pa: 0.000 (s: 0) Exon 7 23725 23736 ( 12 n); cDNA 223 234 ( 12 n); score: 0.750 MATCH C04HBa0127E11.1+ SGN-U345977+ 0.798 189 0.220 C PGS_C04HBa0127E11.1+_SGN-U345977+ (15114 15171,15708 15719,20067 20073,20558 20608,21969 21990,23054 23080,23725 23736) Alignment (genomic DNA sequence = upper lines): CAAAAACCAG CTTTTAAGTC AGTTTGACCA GCTTTTAAGC TGAGCCAAAC AGGCTCTAAA 15173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CAAAAACCAG CTTTTAAGTC AGTTTGACCA GCTTTTAAGC TGAGCCAAAC AGGCTCTT.. 107 TCTTAACAGC TCAACCATAG CCTCTCCATT TCTCATTTGA AAACAACAGC AAAAAGCCAC 15233 .......... .......... .......... .......... .......... .......... 107 AAAGAACTTT GCTTGGACAA TGAAGAAAAT ATAATATGCA AGCAACAGCA AACACAGTAT 15293 .......... .......... .......... .......... .......... .......... 107 CAATATGCAA CCATTAGTAC GAGATAATAC ATGAGGGAAA AGCAGATAAG ATTCATGTTG 15353 .......... .......... .......... .......... .......... .......... 107 AAACCACCAC TGAAGGAACC AGAAATGAGA GCACATAAAA TATTTAGAAG ATATTAAAAA 15413 .......... .......... .......... .......... .......... .......... 107 AAATCTACAA GCAAATGCCA TCAACAGTAT TTATCCATTA AAAAAAATTA ACAAAAAAAA 15473 .......... .......... .......... .......... .......... .......... 107 ACTAGAAAAC ACGAGGTGGG AATAGTTACT GTTTCTCCTG GTTCGAGCAC ATCAGCAATT 15533 .......... .......... .......... .......... .......... .......... 107 CGCCTCTTCA TCTTTCCTAG TTGTTCTGAT GTAAGGTCTT GAATCTCATC TTCATTTGAT 15593 .......... .......... .......... .......... .......... .......... 107 ATCTTGATAG CTTTCTTCCC AGAATATGTT TTCTCAGTAT CAACACTATC AAGCCATGCA 15653 .......... .......... .......... .......... .......... .......... 107 TCCTGTACAC TTACTAAGAT CAGGAAAAGA TGCAAGGAAT GGGGCCTGGG GTAGAAAATG 15713 |||||| .......... .......... .......... .......... .......... ....AAAATG 113 TTTGATGTAA GACTAGCACC TTTATCTCAT TTTCATTTAA ATATTCAACA TAGTTTCCTG 15773 | || | TCTGCT.... .......... .......... .......... .......... .......... 119 ATGCATCAAA ATAACCTTCT TCTCTCTCTT TATTCAGATT AAAAGGTTCT ATTGCAATCC 15833 .......... .......... .......... .......... .......... .......... 119 CATCATCAAT GAATGTTTCA TTTTCCTGCA ACCAGAGATA TTCCATTAGT TACACCAGAA 15893 .......... .......... .......... .......... .......... .......... 119 AGGAATACAA GAAATACAAA GTTTAGCCAT AGAGCAATTA GAATATGCAA AATTTGACAT 15953 .......... .......... .......... .......... .......... .......... 119 TAATGATAAT TCCAAGTACT TCAGTTTGTT TATAGGCTGG AGAGCCGAAC CAAAGAACAA 16013 .......... .......... .......... .......... .......... .......... 119 ATAACAATAT AATTCCACGA ATTTAATGTG ACAGCACATG AAGCAGAAAT AATGAAATTT 16073 .......... .......... .......... .......... .......... .......... 119 AATTAACATT TATGTTTTGA GAGTTTAAGT AAAAGAAATA AAATGCTCGG AAAATAAAAC 16133 .......... .......... .......... .......... .......... .......... 119 AGAAGGAAAC AAAGGAAGTA AAGCTACAAA TTTTATTTCC ATTGTTTCAT TGGCGAGGGA 16193 .......... .......... .......... .......... .......... .......... 119 ATTATGAAGA ACAGGAAAAA TTTATTCAAG GGAACTCAGA TAAATTCTTT TCTTCTTTGT 16253 .......... .......... .......... .......... .......... .......... 119 AATCCTATTC TCATCTCTAT GCAAATTAAA GTACGTGCAG AATTTAAATC TTACCCATTT 16313 .......... .......... .......... .......... .......... .......... 119 TCTATTTGTA AAGTTCAAAA ACCCACAGTT CATAAAGTCC AAGGAAGAAC TCTACATAAG 16373 .......... .......... .......... .......... .......... .......... 119 ATAGAATGAG ACAAGCCTAT TGGACACAGA AACAACGATT CATGCTCAGT GAATTTAAAA 16433 .......... .......... .......... .......... .......... .......... 119 GTGAAAAGTG CAAAAAAAGC GTCTGCGAGG CTTGAAATGA ATAGGAGAGA AGTAAGGCAC 16493 .......... .......... .......... .......... .......... .......... 119 ATGCTTTATT AAGTGAAGCG CACAATTATT TGATGATGAT TCCTTTACAC ATGGCATGCA 16553 .......... .......... .......... .......... .......... .......... 119 ACCTTATGCT ATTCCTTTTG ATGAGCCGCT ATATGCTAAG AAAAAACACC ATTCTGTCTC 16613 .......... .......... .......... .......... .......... .......... 119 CTTGACCTTT GTTTCAAGAG CATAAGGATT GATATGTATT AGTGGGGTTT TTAAAATGAA 16673 .......... .......... .......... .......... .......... .......... 119 GTTACAGATG GTCCCTATTT TGCTTACGTT ACTACTTACT ACTTGGGGAA TATAATTAGC 16733 .......... .......... .......... .......... .......... .......... 119 AATCATGATT ATTTATGGTT TTCAATTGTG CATGAGTACC CATATCTCAG CTCTTTTAAA 16793 .......... .......... .......... .......... .......... .......... 119 GAAGATTACC CATATCTAAG TTGTTCTAGC TAAACACGCA GCACAAATCA TGCCAAGCCC 16853 .......... .......... .......... .......... .......... .......... 119 CAAAAAAGTT TGTAATAATC CTAGTATCAC TTCCTTATCA AGAGATATGA AGTAGACATC 16913 .......... .......... .......... .......... .......... .......... 119 AGATATCCAC AAAGTACCTA ACTACAATCA AACAATTATG GAATAACAGA TATTGGAAGG 16973 .......... .......... .......... .......... .......... .......... 119 ACAAACCTCA TATTCCACTT CTGCCCGCGA TATGTCAGCT ATTTCACCTT CGTTTTCTTC 17033 .......... .......... .......... .......... .......... .......... 119 ATCAAGGAGT TCCGCTGTTA TTTGATTCCG CCGTGCCGAA CGCTCTTTGG CTGCATTGCG 17093 .......... .......... .......... .......... .......... .......... 119 AGGATCTGTC CGCCCACTAG GTTTATCTTC ACACCCATCA ATCGTGGTAT CGCCCTGCTT 17153 .......... .......... .......... .......... .......... .......... 119 TGCCTTCTTA CCCTTTGGGA ACCTTACACG CTTCTGCCTG TGATGTTGAG GAAGAAAGCA 17213 .......... .......... .......... .......... .......... .......... 119 ACATGTCAAT GCAAACATCC TTAAAATCCA GCATCATAAA TGAAACTATT TTGAACCCAA 17273 .......... .......... .......... .......... .......... .......... 119 CAAATGAGGT TGTCATAGAG CATGGCAGAC GTCACATGGA AAAAAAAAAC GCTATTTGAA 17333 .......... .......... .......... .......... .......... .......... 119 GTTGTATTAC TTGCTATTGC TGTCTCATGA AACACATTAT CTTTACAAGG AAAATAACAG 17393 .......... .......... .......... .......... .......... .......... 119 TAGGTAAAAA AGATCTATTT TTTCTCGTAC TAAACTCATG ACAGTCTCAA CAACAAAATA 17453 .......... .......... .......... .......... .......... .......... 119 CAACCTCTAA TCTGAAAAAG AAAGCAGTCT ACTTTATCTT CAAAGACAAA CTATTGAGCA 17513 .......... .......... .......... .......... .......... .......... 119 CTGGAATGAA ATGATCACAG TTAGAGTAAA TAGATATAGA GATTACATAT AACTAATCCA 17573 .......... .......... .......... .......... .......... .......... 119 ATTAGTTTGG GCATGAGGCA TAGTCACTGT ATAATTCCTT AAATCTCCAA CAAATAAAGT 17633 .......... .......... .......... .......... .......... .......... 119 ATTTTCTTGC ATAGTTCTCT CAAGGCCAAA CACACCCTTC TTTATTAGAC ATTTTCTAGG 17693 .......... .......... .......... .......... .......... .......... 119 TACTAAGAAT ACACAATCCA CCCATTCCCA CTAGATTTTT GCTCCAGGTT CACATCATAT 17753 .......... .......... .......... .......... .......... .......... 119 ATGAAATCAA CGGTAATTCA GATTAGGAAA AAACAAGCTA ATAGAATCTG GGCGCATTTG 17813 .......... .......... .......... .......... .......... .......... 119 CAGAATAACA AAAATAGATA GCAGCTGAAA GAAAGCAAAT CCAAGTACAT ACTCCTGAAC 17873 .......... .......... .......... .......... .......... .......... 119 TCCTCTGGGA AGCTCCTAAA ATTCTTACAA TAATGACATA ATAAATCAAT CCCAGCAGAA 17933 .......... .......... .......... .......... .......... .......... 119 GCAAAAAATA CTATGTGTAT TCTCCCTATC TATTTAAGCC TCAATTGACA CAGTAAAGTG 17993 .......... .......... .......... .......... .......... .......... 119 ATATCTATGT GGATGGGAGG TAGTAGAGAT CCCATAGGAT AGAATTAATT GAGTTATAAA 18053 .......... .......... .......... .......... .......... .......... 119 AACAAAAATG AGCTTCCTTA CTTATTTATC TATTTTTATC TTTCTATTGA TACAAAATAC 18113 .......... .......... .......... .......... .......... .......... 119 TCCCCCTAGT TCACTTCTTT CGTTTTTTAG ACAACTGTAG TTACTAGACC AGCTTATGCG 18173 .......... .......... .......... .......... .......... .......... 119 CACCTTAACT AATTACATAG ATATCTGTCG CTCCCCACCA AAACAGCTAT AAAGTAACTC 18233 .......... .......... .......... .......... .......... .......... 119 TATCCTCAAG GCTAGGACAG GTAGAAAGAA ATCACTTTTC TTCTCTATGT TGGAATTTGA 18293 .......... .......... .......... .......... .......... .......... 119 ACCTTAGACC TCATGGTTCT CAACTCACTT CATTAACCAC TAGATCACAC CCTTCCTTAT 18353 .......... .......... .......... .......... .......... .......... 119 TCACTTTTTT ATGAAATCAA TGTCATTAAA TTTCAATGGT AAAATAAATT GGTTTCCTTT 18413 .......... .......... .......... .......... .......... .......... 119 CGCATTATGT TTTTATTATG ATTGTGGTGT TCACGCCAGT TTTCCCACAC CTCAACTAAT 18473 .......... .......... .......... .......... .......... .......... 119 TCCACCTCTC ACCATTAACA ACTATCAGGT AACTCTGTCC ACCAAAACTA GGACAAATAG 18533 .......... .......... .......... .......... .......... .......... 119 AAAAAAATCA TCTAGCATTT TTGTCTCTAC TAGAAATTGA ACATTAGACC TCATGATGCT 18593 .......... .......... .......... .......... .......... .......... 119 CAACCCACCT CCCTTGACCA CTAAGCCACA CCCTTTGAGA AGTTTTTTGT TAATTTTAAT 18653 .......... .......... .......... .......... .......... .......... 119 GACCTTGGTA TCCAAATACA TTGGATACGT CCCACCTCCC ACCAAATAAC TTTGTTGTCT 18713 .......... .......... .......... .......... .......... .......... 119 TCCCTGAGTT TTATAAGACC TCAGAATTCT CAACCACTTC ATTAATCACT AAGCCACACC 18773 .......... .......... .......... .......... .......... .......... 119 CTTGGGGTTT CACCACTATG TTTCAAACAT ATACAAAATA TTATTTACTA AGAAATCACA 18833 .......... .......... .......... .......... .......... .......... 119 AACTTACAGC TCAAATTTTA TATTCCGAAA TCAATATAAC AAATGAATAT GAGCTTTCAT 18893 .......... .......... .......... .......... .......... .......... 119 CTGTGCAGAA TCCCTAAGTA TGTTCAGAAT AAATTAGGGC ACAAAATCAC ATGAAATTTT 18953 .......... .......... .......... .......... .......... .......... 119 TCAAAAATAA AAAATAAAAA GAAAGAAGGA AGGAAATAGT TACTCTGGAG CTTTATTGGA 19013 .......... .......... .......... .......... .......... .......... 119 GTCATCGTCC TCAACGAAGG GACGTTTGGC ACGTCGCGAT GAACCTTCTT CCATGGCGTA 19073 .......... .......... .......... .......... .......... .......... 119 ATCGGCAATT GATATGAAGG ATTCAGAAAG GAAAAAAAAT GAAGGGGCAA AGTGAAGAGA 19133 .......... .......... .......... .......... .......... .......... 119 GAGCGGTGGT ACTGGTAAAC ATCAAAAAAA ATAATAATAA TAAATTCTAT CTTACAAACT 19193 .......... .......... .......... .......... .......... .......... 119 ATAATACCTT TTTTAAATTG ATAAATATCT AAAATTAACA TTACCAATAT TAATCTTATT 19253 .......... .......... .......... .......... .......... .......... 119 GGATAAATTC AAATAAGTTA TTGATAATAT AGAAAAATAA TATTATAAAT TATTAGTTGA 19313 .......... .......... .......... .......... .......... .......... 119 GAAATGTGAC AACACAAAAA ATATACTAAT AGCTGAGATA ATTTGTAAAA TAAAATTATC 19373 .......... .......... .......... .......... .......... .......... 119 ATTTTACTTT ATTATGGATA TTCATGTCTA CTAGTCATTT TTATCATTAA TTAATATTTA 19433 .......... .......... .......... .......... .......... .......... 119 GGATGATGAT TATTATTATT ATTATTATAT ATATATATAT ATATATATAT ATATATATAT 19493 .......... .......... .......... .......... .......... .......... 119 AAAAGAGATA AAAATGTAAG ATCAAATTGT TTCATAAATA TATAGAATAA ATTACAATTT 19553 .......... .......... .......... .......... .......... .......... 119 ACAAATATTA ATATTTTTTT AATTTAATCA CTCTGTCACA GTTTTGCATA GATAAAAATG 19613 .......... .......... .......... .......... .......... .......... 119 ATCGATAAAT TATTTCGTTC GACATTTGCA CAAGGATTTT ACTTTTATAA AAATGATATT 19673 .......... .......... .......... .......... .......... .......... 119 TCAAAAAAAT TGTATAACTA ATTATTTTCA TAAATAAATT ACTTATGTTG AATAGTTTAA 19733 .......... .......... .......... .......... .......... .......... 119 TTTGGTTATT AGTTCACTAA CTCCTTGTTA TAAAGATACA ATTTATTTCA TTTTAATGGT 19793 .......... .......... .......... .......... .......... .......... 119 ATTATTGAAT AAGTAGTATT ATAGGATTGT TTTGGTATTT CAATTTTTAT TTTTTTTTTG 19853 .......... .......... .......... .......... .......... .......... 119 TTTAACTCAA TATTATAGGA TTATTTGGTA TTTCAAATAT AATTTTTTGT TTAAGTCAAT 19913 .......... .......... .......... .......... .......... .......... 119 ATTCAAATTT TGTGTATAAA AAGTACATAA ATTTGGTATA AAATATGTAT ATAACTATAT 19973 .......... .......... .......... .......... .......... .......... 119 AAAATTTGTA TGAAGCTCAT GTTAGATACT ATTGCATACA ACATTCATAT CAAACTAAAT 20033 .......... .......... .......... .......... .......... .......... 119 ACAACTACAA TACCAACAAA TGATATGTTG CAGTAGATGA GTTACTCCTG TCGGGTTTCA 20093 |||||| .......... .......... .......... ...TAGATGT .......... .......... 126 GATTCGAATC ATCAGTATGT AAAAATTCTT GATAGAGTGT GTTTTCCCTC AAATGACCCT 20153 .......... .......... .......... .......... .......... .......... 126 ACGTGACATG AATTTGGGAA AGTCAAGCTT CAGTGGATAC TTAACACTTA GTGAGAGACT 20213 .......... .......... .......... .......... .......... .......... 126 AGAAAAAAAA ATACAACTAT TATAAATATA CCAAACTTAA AAAATAATTT ACTCATAACT 20273 .......... .......... .......... .......... .......... .......... 126 CATCCGCCAT ATTATGATTA TCATTTGATT TTTGATACAA TTGTATGTAA TTTTGAATTT 20333 .......... .......... .......... .......... .......... .......... 126 AAACGAAGTA AAATCAAAAT TTCAATTCGA AACTAATTCG AATTTTACCC AAATAATCTC 20393 .......... .......... .......... .......... .......... .......... 126 AAATTTTATA TTATTAGTCT CCTCGAAATT CCATTTCTTT GGAGAAATCA CCAATTGAAA 20453 .......... .......... .......... .......... .......... .......... 126 CGAAAGTTTT CCTATAGATT CCCCAAACAA GGAAAATTAA AAAGAAATCC TTAATTATAA 20513 .......... .......... .......... .......... .......... .......... 126 TCTGATTTCG TTCGATAAAA CTTTTAAAAT AATGTTTGTT CTAGGAAGAC TTGTTGTTGA 20573 | | | | |||| .......... .......... .......... .......... ....G-CTAT ATATATTTGA 141 GTTTCTTTCT GAAATAGTCT ATCTGCCTCC ACGAGGTACT CGTACGATCT ACATACGCTT 20633 | || ||| | ||| |||| | || ||| | | GCTT-TTTTT GAAGTAGTAT ATTATCCT-T AAGTT..... .......... .......... 174 TAGCTTTTAA TTTTTGTCTA AAGACACAAC TTGTGTCACT GAATTTATAA AGTATAACTC 20693 .......... .......... .......... .......... .......... .......... 174 GTGTCATGCA ATTTTAAATT CTTGCCTCAA CACTTACCAG AGAATATATA CTTTTCTTTA 20753 .......... .......... .......... .......... .......... .......... 174 CTATTAACCT TAACTCTTTC TGCTTTAAGA CTTTTTCTAA TGTTGGATTT TCTTAAGCTT 20813 .......... .......... .......... .......... .......... .......... 174 TAAATACTCA TTTCCATCAT AACAATTATC AAACTCTCAA TCTACTGCTA TACTTGAGAC 20873 .......... .......... .......... .......... .......... .......... 174 TTACAACTTT GAGGCTGGTA AATGTGCTAG TCGTCTCAAG GCTTGCGTTT GCATATATAG 20933 .......... .......... .......... .......... .......... .......... 174 GAAGGAGAAG AAATTATAGT ATGTGGCAGA GGAGATTCAA TCACTCAAGC AACGAATCAT 20993 .......... .......... .......... .......... .......... .......... 174 GGATATCTCT CGCAAACGAG AGACTTATCG TATTACAAAT ATCAATTCAG GAGATCAAGG 21053 .......... .......... .......... .......... .......... .......... 174 GCCAAGTAAT CAGGTTACAA TATTGAGGAG AACTACCTCA TATGTGGATG ACCGCGGTTA 21113 .......... .......... .......... .......... .......... .......... 174 CATTTTTGTT GGATTTCAGG AATGTTGTAC AAACATTGCT AGTTGAAATT CTCAAACCAG 21173 .......... .......... .......... .......... .......... .......... 174 AGCCTTGTCG AAGTGTCCTC TGCATTTATG GCATGGGCGG TGTAGGCAAG ACCACTCTTG 21233 .......... .......... .......... .......... .......... .......... 174 CGAGAAACCT CTACAGAAGT CCTAGTATAT AGTCAATACC TTCCCTACAC GTGTGTCGAT 21293 .......... .......... .......... .......... .......... .......... 174 ATGTGTTTCT CAAGAGTGCA ACACAATGGA TCTTCTTAAG ACTATCATAA AATCCATCCA 21353 .......... .......... .......... .......... .......... .......... 174 AGTTTGCACC AACGAAACTC TTGATTTGTT GGAAAGGATG GCAGAAAGAG ATCTAGAAAT 21413 .......... .......... .......... .......... .......... .......... 174 TTACCTTCGT AAGCTATTAA CAAAACACAA ATACCTTTTG GTGGTTGATG GTGTGTGGCT 21473 .......... .......... .......... .......... .......... .......... 174 AATAGAAGCA TGGAAGAGTT TGAAAAGAGC ATTTCCGGAT AACAATAATG GCAGCAGAGT 21533 .......... .......... .......... .......... .......... .......... 174 TGTTATTACC ACACGCAAAG TGGATGTCGC TGAAAGAGCA GACGACAGAG GTTTTGTCCA 21593 .......... .......... .......... .......... .......... .......... 174 TGAACTTCGT TTCCTAAGCC AAGAAGAAAG TTGGGATTCT TTTGTAGGAA ACTACTTGAT 21653 .......... .......... .......... .......... .......... .......... 174 GTTCGATCAA TGGTTACAGC AATGGAAAGT CTAGCTAAGG ATATGGTGGA AAAGTGTAGA 21713 .......... .......... .......... .......... .......... .......... 174 GGCTTACCTC TTGCAATTGT TGTATTGAGC GGATTGTTGT TCATCTTGTA TTCCAAACAT 21773 .......... .......... .......... .......... .......... .......... 174 ACTTAGAACA AAACTTTGAA CATCTTTGTA AGAAAACAAA GTTTAAGAAC ATTTTCACAA 21833 .......... .......... .......... .......... .......... .......... 174 CTAGAAAATT AAAACTAGTA GCGAAACTAG AATCAGAAAC AGATTTTAAA AAAAATATAC 21893 .......... .......... .......... .......... .......... .......... 174 GAAATATTTT TCTTAAAGAG GAATTGTTGT TAATATGTGT CTAAAGAATC TTACTGATTC 21953 .......... .......... .......... .......... .......... .......... 174 CAACAAACTT TGCAGAAACA CGAAGTTACC AAGTTTAATG AACCAGTGAA GAATAGAAGA 22013 |||| || ||| |||| .......... .....CAACA TAAAAATACA TGCTTTA... .......... .......... 196 ATAGAAGAAC TGAAATTAAT TCACAAATCT AAAATTTGTA AAACACGTAC CAGAATCTGA 22073 .......... .......... .......... .......... .......... .......... 196 AAAAAAATTT AATAGGAAAA AGATCAAGTC CACTGAATTC ACAGTGTCCC CTTAAGGAAA 22133 .......... .......... .......... .......... .......... .......... 196 TTATTCCCCT CTAGTATCCG AGGTTTGATT TGGAATATGA CCTCCTAGGG TAAAATGATC 22193 .......... .......... .......... .......... .......... .......... 196 TCAATCACCA GAGTATAGAT ACCAAAAACT CCGGTGTCAG CGAACCACTC AACGGCAGTA 22253 .......... .......... .......... .......... .......... .......... 196 AAGTACACTT AGAATACTAA ATTTAGTAGT TGAAGAAGAA GTCCATTAAT TCTTTTTTTA 22313 .......... .......... .......... .......... .......... .......... 196 AAATGAGAGG AAATCCCTCA ATTTATAGAA GACAAAGGGT GGTGCGAAAA GGTTCTTATT 22373 .......... .......... .......... .......... .......... .......... 196 GTGCCTTACC GGAAAGGTCA CAAACCTTTG GAAAAGTCAC AATCTTTCAG AATGATCGTC 22433 .......... .......... .......... .......... .......... .......... 196 ACCTTTCATA AAACTCACAA CTTTCCATAA AAGTCACAAT TTTTCATAAA AATTGCAACT 22493 .......... .......... .......... .......... .......... .......... 196 TTTCATAAAA GTCACCACTT TTCATCAAAG TCGCAACATT TCATAAAAGT CACAACTCTT 22553 .......... .......... .......... .......... .......... .......... 196 CATAAAAGTC GCAACTCTTC ATTTTCCATT CACGCCTTTT TTAAAATCCA ACACGGATTA 22613 .......... .......... .......... .......... .......... .......... 196 CTTTCGCATA AAATGGGGCT AGACGAATGG CAAAAGGTGA AAGACTGCCT TTGGAAGAAC 22673 .......... .......... .......... .......... .......... .......... 196 ATTGAAGATG ACTCTATTGA AATCTCCTAT ATACTATCAT TGAGCTATAA TGATTTGTCA 22733 .......... .......... .......... .......... .......... .......... 196 ATTGTGCTCA AGCAATGTTT TCTGTACTTT GATATTTTTC CAGAAGATCA AGTGGTCGAT 22793 .......... .......... .......... .......... .......... .......... 196 GTTGAGAACA TAATATGGTT GTGGATGGCC GAGGGTTTCA TACCAAATGG AGAAGAAAGA 22853 .......... .......... .......... .......... .......... .......... 196 ATGGAGGATG TCGCTGAATG CTACTTGAAT GAGCTGATAA GACGAAGCTT GATACAAGTG 22913 .......... .......... .......... .......... .......... .......... 196 GTAAATACAT CTTGAGAAAA AGTTACTTTA TGCAGGGTTC ATGATTTACT TCGTGATCTT 22973 .......... .......... .......... .......... .......... .......... 196 GCAATACAAA AGGCATCGGA GATAAACTTC TTTAACATTT ATGATCCAAG AAATCACTCC 23033 .......... .......... .......... .......... .......... .......... 196 ATATCCTCTT CATGTATTAG ACATGCCATT CATAGTCAAG GAAAAAGGTA CCTCTAACCT 23093 |||| || ||||| || ||||| .......... .......... ACATAGCACA TATAGTTAA- TCAAAAG... .......... 222 GATCTTTCTA ATTTAAAGTT GAGGTCAATT ATGTTCTTCG ATCCAGATTT TCATAATCTG 23153 .......... .......... .......... .......... .......... .......... 222 TTTGAACTTA CAGATGTGTT CCGACGTTTA TATGTGTTGT AAATTGGCAA CCTCAAGAAT 23213 .......... .......... .......... .......... .......... .......... 222 CTACAGACAC TTTGTGTTGT AAATGAAACT GGACGCTTAT ACCAACTACC CCACGAGACA 23273 .......... .......... .......... .......... .......... .......... 222 GCTGACCTAA TAAATCTAAG ACATTTAGTT GCTCGGTATT GAGAACCTCT GGTACGTATA 23333 .......... .......... .......... .......... .......... .......... 222 AACAAACTCA CTAGTCTTCA TGTTCTTAAA GACATCTCTT GTGATCAGTG GGAAGATATT 23393 .......... .......... .......... .......... .......... .......... 222 GACCCTGCTT ATTTAATCAA TCTTCGAGAA TTAACCATGC GTAATATTTG GAATTATTAC 23453 .......... .......... .......... .......... .......... .......... 222 TCCCTAAACA ACATTAGCAG CTTGACAAAC CTAAGCACTC TCACATTGTT TTCTGAAGAA 23513 .......... .......... .......... .......... .......... .......... 222 GTAATATCAT TCCCATCCCT TCAATTTGTT AATCGTTGTG AAAAGCTCCA GAAATTGTAT 23573 .......... .......... .......... .......... .......... .......... 222 TTAAATGGGA GAATAGAGAA ATTGTCTCCG TTTCCAAATT CCATCACAAT GATTGTTCTG 23633 .......... .......... .......... .......... .......... .......... 222 AGGGACTCAG TACTGACAGA AGATCCGATG CCTATTTTGG GAATGTTGCC AAACCTAAGG 23693 .......... .......... .......... .......... .......... .......... 222 AATCTCGAAT TGTGTAGAGC TTATGAAGGA GAAGAAATAA CGA 23736 | ||||| | || .......... .......... .......... .ACGAAATGA TGA 234 hqPGS_C04HBa0127E11.1+_SGN-U345977+ (15114 15171) ******************************************************************************** EST sequence 45 -strand 640 n (File: SGN-U330601-) 1 CAAAACTGTT TCTCCTGGTT CGAGCACATC AGCAATTCGC CTCTTCATCT TTCCTAGTTG 61 TTCTGATGTA AGGTCTTGAA TCTCATCTTC ATTTGATATC TTGATAGCTT TCTTCCCAGA 121 ATATGTTTTC TCAGTATCAA CACTATCAAG CCATGCATCC TTTATCTCAT TTTCATTTAA 181 ATATTCAACA TAGTTTCCTG ATGCATCAAA ATAACCTTCT TCTCTCTCTT TATTCAGATT 241 AAAAGGTTCT ATTGCAATCC CATCATCAAT GAATGTTTCA TTTTCCTCAT ATTCCACTTC 301 TGCCCGCGAT ATGTCAGCTA TTTCACCTTC GTTTTCTTCA TCAAGGAGTT CCGCTGTTAT 361 TTGATTCCGC CGTGCCGAAC GCTCTTTGGC TGCATTGCGA GGATCTGTCC GCCCACTAGG 421 TTTATCTTCA CACCCATCAA TCGTGGTATC GCCCTGCTTT GCCTTCTTAC CCTTTGGGAA 481 CCTTACACGC TTCTGCTCTG GAGCTTTATT GGAGTCATCG TCCTCAACGA AGGGACGTTT 541 GGCACGTCGC GATGAACCTT CTTCCATGGC GTAATCGGCA ATTGATATGA AGGATTCAGA 601 AAGGAAAAAA AATGAAGGGG CAAATTGAAG AGAGAGCGGT Predicted gene structure (within gDNA segment 14851 to 19884): Exon 1 15501 15657 ( 157 n); cDNA 5 161 ( 157 n); score: 1.000 Intron 1 15658 15734 ( 77 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 2 15735 15858 ( 124 n); cDNA 162 285 ( 124 n); score: 1.000 Intron 2 15859 16979 (1121 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 3 16980 17190 ( 211 n); cDNA 286 496 ( 211 n); score: 1.000 Intron 3 17191 18996 (1806 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 4 18997 19140 ( 144 n); cDNA 497 640 ( 144 n); score: 0.993 MATCH C04HBa0127E11.1+ SGN-U330601- 0.998 636 0.994 C PGS_C04HBa0127E11.1+_SGN-U330601- (15501 15657,15735 15858,16980 17190,18997 19140) Alignment (genomic DNA sequence = upper lines): ACTGTTTCTC CTGGTTCGAG CACATCAGCA ATTCGCCTCT TCATCTTTCC TAGTTGTTCT 15560 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTTTCTC CTGGTTCGAG CACATCAGCA ATTCGCCTCT TCATCTTTCC TAGTTGTTCT 64 GATGTAAGGT CTTGAATCTC ATCTTCATTT GATATCTTGA TAGCTTTCTT CCCAGAATAT 15620 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTAAGGT CTTGAATCTC ATCTTCATTT GATATCTTGA TAGCTTTCTT CCCAGAATAT 124 GTTTTCTCAG TATCAACACT ATCAAGCCAT GCATCCTGTA CACTTACTAA GATCAGGAAA 15680 |||||||||| |||||||||| |||||||||| ||||||| GTTTTCTCAG TATCAACACT ATCAAGCCAT GCATCCT... .......... .......... 161 AGATGCAAGG AATGGGGCCT GGGGTAGAAA ATGTTTGATG TAAGACTAGC ACCTTTATCT 15740 |||||| .......... .......... .......... .......... .......... ....TTATCT 167 CATTTTCATT TAAATATTCA ACATAGTTTC CTGATGCATC AAAATAACCT TCTTCTCTCT 15800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTTCATT TAAATATTCA ACATAGTTTC CTGATGCATC AAAATAACCT TCTTCTCTCT 227 CTTTATTCAG ATTAAAAGGT TCTATTGCAA TCCCATCATC AATGAATGTT TCATTTTCCT 15860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CTTTATTCAG ATTAAAAGGT TCTATTGCAA TCCCATCATC AATGAATGTT TCATTTTC.. 285 GCAACCAGAG ATATTCCATT AGTTACACCA GAAAGGAATA CAAGAAATAC AAAGTTTAGC 15920 .......... .......... .......... .......... .......... .......... 285 CATAGAGCAA TTAGAATATG CAAAATTTGA CATTAATGAT AATTCCAAGT ACTTCAGTTT 15980 .......... .......... .......... .......... .......... .......... 285 GTTTATAGGC TGGAGAGCCG AACCAAAGAA CAAATAACAA TATAATTCCA CGAATTTAAT 16040 .......... .......... .......... .......... .......... .......... 285 GTGACAGCAC ATGAAGCAGA AATAATGAAA TTTAATTAAC ATTTATGTTT TGAGAGTTTA 16100 .......... .......... .......... .......... .......... .......... 285 AGTAAAAGAA ATAAAATGCT CGGAAAATAA AACAGAAGGA AACAAAGGAA GTAAAGCTAC 16160 .......... .......... .......... .......... .......... .......... 285 AAATTTTATT TCCATTGTTT CATTGGCGAG GGAATTATGA AGAACAGGAA AAATTTATTC 16220 .......... .......... .......... .......... .......... .......... 285 AAGGGAACTC AGATAAATTC TTTTCTTCTT TGTAATCCTA TTCTCATCTC TATGCAAATT 16280 .......... .......... .......... .......... .......... .......... 285 AAAGTACGTG CAGAATTTAA ATCTTACCCA TTTTCTATTT GTAAAGTTCA AAAACCCACA 16340 .......... .......... .......... .......... .......... .......... 285 GTTCATAAAG TCCAAGGAAG AACTCTACAT AAGATAGAAT GAGACAAGCC TATTGGACAC 16400 .......... .......... .......... .......... .......... .......... 285 AGAAACAACG ATTCATGCTC AGTGAATTTA AAAGTGAAAA GTGCAAAAAA AGCGTCTGCG 16460 .......... .......... .......... .......... .......... .......... 285 AGGCTTGAAA TGAATAGGAG AGAAGTAAGG CACATGCTTT ATTAAGTGAA GCGCACAATT 16520 .......... .......... .......... .......... .......... .......... 285 ATTTGATGAT GATTCCTTTA CACATGGCAT GCAACCTTAT GCTATTCCTT TTGATGAGCC 16580 .......... .......... .......... .......... .......... .......... 285 GCTATATGCT AAGAAAAAAC ACCATTCTGT CTCCTTGACC TTTGTTTCAA GAGCATAAGG 16640 .......... .......... .......... .......... .......... .......... 285 ATTGATATGT ATTAGTGGGG TTTTTAAAAT GAAGTTACAG ATGGTCCCTA TTTTGCTTAC 16700 .......... .......... .......... .......... .......... .......... 285 GTTACTACTT ACTACTTGGG GAATATAATT AGCAATCATG ATTATTTATG GTTTTCAATT 16760 .......... .......... .......... .......... .......... .......... 285 GTGCATGAGT ACCCATATCT CAGCTCTTTT AAAGAAGATT ACCCATATCT AAGTTGTTCT 16820 .......... .......... .......... .......... .......... .......... 285 AGCTAAACAC GCAGCACAAA TCATGCCAAG CCCCAAAAAA GTTTGTAATA ATCCTAGTAT 16880 .......... .......... .......... .......... .......... .......... 285 CACTTCCTTA TCAAGAGATA TGAAGTAGAC ATCAGATATC CACAAAGTAC CTAACTACAA 16940 .......... .......... .......... .......... .......... .......... 285 TCAAACAATT ATGGAATAAC AGATATTGGA AGGACAAACC TCATATTCCA CTTCTGCCCG 17000 | |||||||||| |||||||||| .......... .......... .......... .........C TCATATTCCA CTTCTGCCCG 306 CGATATGTCA GCTATTTCAC CTTCGTTTTC TTCATCAAGG AGTTCCGCTG TTATTTGATT 17060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATGTCA GCTATTTCAC CTTCGTTTTC TTCATCAAGG AGTTCCGCTG TTATTTGATT 366 CCGCCGTGCC GAACGCTCTT TGGCTGCATT GCGAGGATCT GTCCGCCCAC TAGGTTTATC 17120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCCGTGCC GAACGCTCTT TGGCTGCATT GCGAGGATCT GTCCGCCCAC TAGGTTTATC 426 TTCACACCCA TCAATCGTGG TATCGCCCTG CTTTGCCTTC TTACCCTTTG GGAACCTTAC 17180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACACCCA TCAATCGTGG TATCGCCCTG CTTTGCCTTC TTACCCTTTG GGAACCTTAC 486 ACGCTTCTGC CTGTGATGTT GAGGAAGAAA GCAACATGTC AATGCAAACA TCCTTAAAAT 17240 |||||||||| ACGCTTCTGC .......... .......... .......... .......... .......... 496 CCAGCATCAT AAATGAAACT ATTTTGAACC CAACAAATGA GGTTGTCATA GAGCATGGCA 17300 .......... .......... .......... .......... .......... .......... 496 GACGTCACAT GGAAAAAAAA AACGCTATTT GAAGTTGTAT TACTTGCTAT TGCTGTCTCA 17360 .......... .......... .......... .......... .......... .......... 496 TGAAACACAT TATCTTTACA AGGAAAATAA CAGTAGGTAA AAAAGATCTA TTTTTTCTCG 17420 .......... .......... .......... .......... .......... .......... 496 TACTAAACTC ATGACAGTCT CAACAACAAA ATACAACCTC TAATCTGAAA AAGAAAGCAG 17480 .......... .......... .......... .......... .......... .......... 496 TCTACTTTAT CTTCAAAGAC AAACTATTGA GCACTGGAAT GAAATGATCA CAGTTAGAGT 17540 .......... .......... .......... .......... .......... .......... 496 AAATAGATAT AGAGATTACA TATAACTAAT CCAATTAGTT TGGGCATGAG GCATAGTCAC 17600 .......... .......... .......... .......... .......... .......... 496 TGTATAATTC CTTAAATCTC CAACAAATAA AGTATTTTCT TGCATAGTTC TCTCAAGGCC 17660 .......... .......... .......... .......... .......... .......... 496 AAACACACCC TTCTTTATTA GACATTTTCT AGGTACTAAG AATACACAAT CCACCCATTC 17720 .......... .......... .......... .......... .......... .......... 496 CCACTAGATT TTTGCTCCAG GTTCACATCA TATATGAAAT CAACGGTAAT TCAGATTAGG 17780 .......... .......... .......... .......... .......... .......... 496 AAAAAACAAG CTAATAGAAT CTGGGCGCAT TTGCAGAATA ACAAAAATAG ATAGCAGCTG 17840 .......... .......... .......... .......... .......... .......... 496 AAAGAAAGCA AATCCAAGTA CATACTCCTG AACTCCTCTG GGAAGCTCCT AAAATTCTTA 17900 .......... .......... .......... .......... .......... .......... 496 CAATAATGAC ATAATAAATC AATCCCAGCA GAAGCAAAAA ATACTATGTG TATTCTCCCT 17960 .......... .......... .......... .......... .......... .......... 496 ATCTATTTAA GCCTCAATTG ACACAGTAAA GTGATATCTA TGTGGATGGG AGGTAGTAGA 18020 .......... .......... .......... .......... .......... .......... 496 GATCCCATAG GATAGAATTA ATTGAGTTAT AAAAACAAAA ATGAGCTTCC TTACTTATTT 18080 .......... .......... .......... .......... .......... .......... 496 ATCTATTTTT ATCTTTCTAT TGATACAAAA TACTCCCCCT AGTTCACTTC TTTCGTTTTT 18140 .......... .......... .......... .......... .......... .......... 496 TAGACAACTG TAGTTACTAG ACCAGCTTAT GCGCACCTTA ACTAATTACA TAGATATCTG 18200 .......... .......... .......... .......... .......... .......... 496 TCGCTCCCCA CCAAAACAGC TATAAAGTAA CTCTATCCTC AAGGCTAGGA CAGGTAGAAA 18260 .......... .......... .......... .......... .......... .......... 496 GAAATCACTT TTCTTCTCTA TGTTGGAATT TGAACCTTAG ACCTCATGGT TCTCAACTCA 18320 .......... .......... .......... .......... .......... .......... 496 CTTCATTAAC CACTAGATCA CACCCTTCCT TATTCACTTT TTTATGAAAT CAATGTCATT 18380 .......... .......... .......... .......... .......... .......... 496 AAATTTCAAT GGTAAAATAA ATTGGTTTCC TTTCGCATTA TGTTTTTATT ATGATTGTGG 18440 .......... .......... .......... .......... .......... .......... 496 TGTTCACGCC AGTTTTCCCA CACCTCAACT AATTCCACCT CTCACCATTA ACAACTATCA 18500 .......... .......... .......... .......... .......... .......... 496 GGTAACTCTG TCCACCAAAA CTAGGACAAA TAGAAAAAAA TCATCTAGCA TTTTTGTCTC 18560 .......... .......... .......... .......... .......... .......... 496 TACTAGAAAT TGAACATTAG ACCTCATGAT GCTCAACCCA CCTCCCTTGA CCACTAAGCC 18620 .......... .......... .......... .......... .......... .......... 496 ACACCCTTTG AGAAGTTTTT TGTTAATTTT AATGACCTTG GTATCCAAAT ACATTGGATA 18680 .......... .......... .......... .......... .......... .......... 496 CGTCCCACCT CCCACCAAAT AACTTTGTTG TCTTCCCTGA GTTTTATAAG ACCTCAGAAT 18740 .......... .......... .......... .......... .......... .......... 496 TCTCAACCAC TTCATTAATC ACTAAGCCAC ACCCTTGGGG TTTCACCACT ATGTTTCAAA 18800 .......... .......... .......... .......... .......... .......... 496 CATATACAAA ATATTATTTA CTAAGAAATC ACAAACTTAC AGCTCAAATT TTATATTCCG 18860 .......... .......... .......... .......... .......... .......... 496 AAATCAATAT AACAAATGAA TATGAGCTTT CATCTGTGCA GAATCCCTAA GTATGTTCAG 18920 .......... .......... .......... .......... .......... .......... 496 AATAAATTAG GGCACAAAAT CACATGAAAT TTTTCAAAAA TAAAAAATAA AAAGAAAGAA 18980 .......... .......... .......... .......... .......... .......... 496 GGAAGGAAAT AGTTACTCTG GAGCTTTATT GGAGTCATCG TCCTCAACGA AGGGACGTTT 19040 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......TCTG GAGCTTTATT GGAGTCATCG TCCTCAACGA AGGGACGTTT 540 GGCACGTCGC GATGAACCTT CTTCCATGGC GTAATCGGCA ATTGATATGA AGGATTCAGA 19100 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCACGTCGC GATGAACCTT CTTCCATGGC GTAATCGGCA ATTGATATGA AGGATTCAGA 600 AAGGAAAAAA AATGAAGGGG CAAAGTGAAG AGAGAGCGGT 19140 |||||||||| |||||||||| |||| ||||| |||||||||| AAGGAAAAAA AATGAAGGGG CAAATTGAAG AGAGAGCGGT 640 hqPGS_C04HBa0127E11.1+_SGN-U330601- (15501 15657,15735 15858,16980 17190,18997 19140) ******************************************************************************** EST sequence 34 -strand 725 n (File: SGN-U326781-) 1 GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG TATAGTCAAT ACCTGGCCTA 61 CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 121 TAAAATCCAT CCAAGGTTGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 181 GAGATCTAGA AAATCACCTT CGTGATCTAC TGAAAGAACG CAAATACCTT GTAGTGGTTG 241 ATGATATATG GCAAAGAGAA GCATGGGAAA GTTTGAAAAG AGCATTCCCG GATGACAAGA 301 ATGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATAT CGCTGAAAGA GCAGCCGACA 361 GAGGTTTTGT TCATAAACTT CGTTTCCTAA GTCAAGAAGA AAGTTGGGAT CTCTTTCTTA 421 GGAAACTACT TGATGTTCGA GCAATGGTTG CAGAAATGGA AAGTCTAGCT AAGGATATGG 481 TGGAAAAGTG TAGAGGTTTA CCTCTTGCAA TTGTTGTATT GAGCGGACTA CTTTCGCATA 541 AAAAGGATCT AGATGAATGG CAAAAGGTGA AAGATCACCT TTGGAAGAGC ATTAAAGAAG 601 ATAAATCTGT TGAAATCTCC AACATACTAT CACTAAGCTA CAATGATTTG TCAATTGAGC 661 TCAAGCAGTG TTTTCTCTAC TTTGGTATGT TTCCAGAAGA TCGAGTGGTC AAGGCTGAAA 721 ACACA Predicted gene structure (within gDNA segment 19981 to 24326): Exon 1 21219 21748 ( 530 n); cDNA 1 529 ( 529 n); score: 0.888 Intron 1 21749 22612 ( 864 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0.86) Exon 2 22613 22803 ( 191 n); cDNA 530 723 ( 194 n); score: 0.825 MATCH C04HBa0127E11.1+ SGN-U326781- 0.871 721 0.994 C PGS_C04HBa0127E11.1+_SGN-U326781- (21219 21748,22613 22803) Alignment (genomic DNA sequence = upper lines): GCAAGACCAC TCTTGCGAGA AACCTCTACA GAAGTCCTAG TATATAGTCA ATACCTTCCC 21278 |||||||||| |||||| ||| |||||||||| |||||||| | |||||||| |||||| || GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG --TATAGTCA ATACCTGGCC 58 TACACGTGTG TCGATATGTG TTTCTCAAGA GTGCAACACA ATGGATCTTC TTAAGACTAT 21338 |||||||| | |||||||| |||||||||| || ||||||| |||||||||| |||||||||| TACACGTGCT TGGATATGTG TTTCTCAAGA GTACAACACA ATGGATCTTC TTAAGACTAT 118 CATAAAATCC ATCCAAGTTT GCACCAACGA AACTCTTGAT TTGTTGGAAA GGATGGCAGA 21398 |||||||||| ||||||| || |||||| | |||||| | |||||||||| ||||| || CATAAAATCC ATCCAAGGTT GCACCATGGG AACTCTAGGA TTGTTGGAAA AGATGGATGA 178 AAGAGATCTA GAAATTTACC TTCGTAAGCT ATTAACAAAA CACAAATACC TTTTGGTGGT 21458 |||||||||| |||| | ||| ||||| | || | | | | || | |||||||| || | ||||| AAGAGATCTA GAAAATCACC TTCGTGATCT ACTGAAAGAA CGCAAATACC TTGTAGTGGT 238 TGATGGTGTG TGGCTAATAG AAGCATGGAA GAGTTTGAAA AGAGCATTTC CGGATAACAA 21518 ||||| | | |||| || || |||||||| | ||||||||| |||||||| | ||||| |||| TGATGATATA TGGCAAAGAG AAGCATGGGA AAGTTTGAAA AGAGCATTCC CGGATGACAA 298 TAATGGCAGC AGAGTTGTTA TTACCACACG CAAAGTGGAT GTCGCTGAAA GAGCAGACGA 21578 ||||||||| ||||| ||| ||||||| || ||||| |||| ||||||||| |||||| ||| GAATGGCAGC AGAGTCATTA TTACCACGCG CAAAGAGGAT ATCGCTGAAA GAGCAGCCGA 358 CAGAGGTTTT GTCCATGAAC TTCGTTTCCT AAGCCAAGAA GAAAGTTGGG AT-TCTTTTG 21637 |||||||||| || ||| ||| |||||||||| ||| |||||| |||||||||| || ||||| CAGAGGTTTT GTTCATAAAC TTCGTTTCCT AAGTCAAGAA GAAAGTTGGG ATCTCTTTCT 418 TAGGAAACTA CTTGATGTTC GATCAATGGT TACAGCAATG GAAAGTCTAG CTAAGGATAT 21697 |||||||||| |||||||||| || ||||||| | ||| |||| |||||||||| |||||||||| TAGGAAACTA CTTGATGTTC GAGCAATGGT TGCAGAAATG GAAAGTCTAG CTAAGGATAT 478 GGTGGAAAAG TGTAGAGGCT TACCTCTTGC AATTGTTGTA TTGAGCGGAT TGTTGTTCAT 21757 |||||||||| |||||||| | |||||||||| |||||||||| ||||||||| | GGTGGAAAAG TGTAGAGGTT TACCTCTTGC AATTGTTGTA TTGAGCGGAC T......... 529 CTTGTATTCC AAACATACTT AGAACAAAAC TTTGAACATC TTTGTAAGAA AACAAAGTTT 21817 .......... .......... .......... .......... .......... .......... 529 AAGAACATTT TCACAACTAG AAAATTAAAA CTAGTAGCGA AACTAGAATC AGAAACAGAT 21877 .......... .......... .......... .......... .......... .......... 529 TTTAAAAAAA ATATACGAAA TATTTTTCTT AAAGAGGAAT TGTTGTTAAT ATGTGTCTAA 21937 .......... .......... .......... .......... .......... .......... 529 AGAATCTTAC TGATTCCAAC AAACTTTGCA GAAACACGAA GTTACCAAGT TTAATGAACC 21997 .......... .......... .......... .......... .......... .......... 529 AGTGAAGAAT AGAAGAATAG AAGAACTGAA ATTAATTCAC AAATCTAAAA TTTGTAAAAC 22057 .......... .......... .......... .......... .......... .......... 529 ACGTACCAGA ATCTGAAAAA AAATTTAATA GGAAAAAGAT CAAGTCCACT GAATTCACAG 22117 .......... .......... .......... .......... .......... .......... 529 TGTCCCCTTA AGGAAATTAT TCCCCTCTAG TATCCGAGGT TTGATTTGGA ATATGACCTC 22177 .......... .......... .......... .......... .......... .......... 529 CTAGGGTAAA ATGATCTCAA TCACCAGAGT ATAGATACCA AAAACTCCGG TGTCAGCGAA 22237 .......... .......... .......... .......... .......... .......... 529 CCACTCAACG GCAGTAAAGT ACACTTAGAA TACTAAATTT AGTAGTTGAA GAAGAAGTCC 22297 .......... .......... .......... .......... .......... .......... 529 ATTAATTCTT TTTTTAAAAT GAGAGGAAAT CCCTCAATTT ATAGAAGACA AAGGGTGGTG 22357 .......... .......... .......... .......... .......... .......... 529 CGAAAAGGTT CTTATTGTGC CTTACCGGAA AGGTCACAAA CCTTTGGAAA AGTCACAATC 22417 .......... .......... .......... .......... .......... .......... 529 TTTCAGAATG ATCGTCACCT TTCATAAAAC TCACAACTTT CCATAAAAGT CACAATTTTT 22477 .......... .......... .......... .......... .......... .......... 529 CATAAAAATT GCAACTTTTC ATAAAAGTCA CCACTTTTCA TCAAAGTCGC AACATTTCAT 22537 .......... .......... .......... .......... .......... .......... 529 AAAAGTCACA ACTCTTCATA AAAGTCGCAA CTCTTCATTT TCCATTCACG CCTTTTTTAA 22597 .......... .......... .......... .......... .......... .......... 529 AATCCAACAC GGATTACTTT CGCATAAAAT GGGGCTAGAC GAATGGCAAA AGGTGAAAGA 22657 ||||| ||||||||| || ||||| |||||||||| |||||||||| .......... .....ACTTT CGCATAAAAA GGATCTAGAT GAATGGCAAA AGGTGAAAGA 574 CTGCCTTTGG AAGAACATT- --GAAGATGA CTCTATTGAA ATCTCCTATA TACTATCATT 22714 ||||||| |||| |||| |||||| | ||| ||||| |||||| | | |||||||| | TCACCTTTGG AAGAGCATTA AAGAAGATAA ATCTGTTGAA ATCTCCAACA TACTATCACT 634 GAGCTATAAT GATTTGTCAA TTGTGCTCAA GCAATGTTTT CTGTACTTTG ATATTTTTCC 22774 ||||| ||| |||||||||| ||| |||||| ||| |||||| || ||||||| ||| ||||| AAGCTACAAT GATTTGTCAA TTGAGCTCAA GCAGTGTTTT CTCTACTTTG GTATGTTTCC 694 AGAAGATCAA GTGGTCGATG TTGAGAACA 22803 |||||||| | |||||| | | ||| |||| AGAAGATCGA GTGGTCAAGG CTGAAAACA 723 hqPGS_C04HBa0127E11.1+_SGN-U326781- (21219 21748,22613 22803) ******************************************************************************** EST sequence 3 +strand 1162 n (File: SGN-U323277+) 1 ATTATAATTG CAGACTTAAA GGAGTATAAA ATCACTAAGA TTTTTGTCTC CACCAAAAAT 61 ACAGATTTAA ATAATTTCCT TAAGATTGTT GCCAATCTGT GTTAAGAAAA TCAGAAATTA 121 CTGGTTGTGA TAAATCATTC AGAAACACGA AGTAACTGAG ATTTTTAGAA CCACTAAATA 181 AGATGAACAT AAATTTATTT GTAAAAATAA TTTAATCTGT AAAACTTACC AGAATCTTGA 241 ATACTCTTTT TGATAATTTA GGAAAAAAAT CAAGTCCACT GAATTCACAG TGTCCCCTTA 301 AGGAAATTAT TCCCCTGTAG TATCCGAGGT TTGATTTGGA ATATAACCTC CCAGGGTAAA 361 ATGATCTTAA TCAGTAGAGT ATAGATACCA AAAACTCTAC TGTCAGCGAA TCAATCCACA 421 GCAGGAAAGT ACACGAAGAA AAAATGTGTT TATTAATAAG TAGGAATATC AGAAAATTCG 481 TTAGTAAATA TTCTGAAGAC TGAATGGTAT TTATAAACAA GAATAATATA TTCTGAAAGG 541 CAACCCTTTC AGAATTGACA CAACCATTAA TGAAAGGTTG CAAACTTTCA AATGGTATTG 601 ACTGTTCCTG AAAGTTGCAA CCTTTCAGAA CAGTGGCGGG AATTTTTAAA ATTATCTCTC 661 GATCGATCAT TTGCCAAAGC CGAAGCCGAA GCCGAAGCGA GCGAGCGACG ACGACGACGG 721 CGCGAGGGGG GTTCCTCTTT CCAACCCTTT TAATAATTAA TAGGAGTGTT TATTTATTTA 781 AACTCTCTTA TTTTCATTTC CATTAACGAT GAGGGACTAT TGCCTTTTTT ATTAAAGCAT 841 TAGAGGACTT TTCAAGTTCC CAACCTTTCA AGTTCTAAAC TTTTCAAATT CCTCTCCTTC 901 CCTCTATTTC CCATCAATTC TTGCTACATA CCCAACAGTA ATTGTTTAAT CTTTGTTAAG 961 TCACTTTTTG TGTTGAAATT ATTTACTTTT CTCCCCAACT CCCAAAATCT CGTCTTTCCT 1021 CTTTCGTGTC ATTTTCAACC TGAGACGGAG TGGGTTAATC ATTTGACTAG TTCTAATACT 1081 CGGGCTTAGC ATTTAATTGC TACTTTGCTC TCTTTTGTGA AGATTTTGGC TTTGGAACTT 1141 TGGTTTTTTG AGCATAATGC TA Predicted gene structure (within gDNA segment 18816 to 31561): Exon 1 21641 21672 ( 32 n); cDNA 114 142 ( 29 n); score: 0.719 Intron 1 21673 21968 ( 296 n); Pd: 0.000 (s: 0), Pa: 0.993 (s: 0.59) Exon 2 21969 22266 ( 298 n); cDNA 143 439 ( 297 n); score: 0.752 Intron 2 22267 28304 (6038 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0) Exon 3 28305 28322 ( 18 n); cDNA 440 456 ( 17 n); score: 0.833 Intron 3 28323 28515 ( 193 n); Pd: 0.990 (s: 0), Pa: 0.000 (s: 0) Exon 4 28516 28527 ( 12 n); cDNA 457 467 ( 11 n); score: 0.833 Intron 4 28528 30662 (2135 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.62) Exon 5 30663 30747 ( 85 n); cDNA 468 548 ( 81 n); score: 0.624 MATCH C04HBa0127E11.1+ SGN-U323277+ 0.723 445 0.383 C PGS_C04HBa0127E11.1+_SGN-U323277+ (21641 21672,21969 22266,28305 28322,28516 28527,30663 30747) Alignment (genomic DNA sequence = upper lines): GAAACTACTT GATGTTCGAT CAATGGTTAC AGCAATGGAA AGTCTAGCTA AGGATATGGT 21700 |||| |||| | ||| ||| ||| || | || GAAATTACTG GTTGT--GAT AAATCATT-C AG........ .......... .......... 142 GGAAAAGTGT AGAGGCTTAC CTCTTGCAAT TGTTGTATTG AGCGGATTGT TGTTCATCTT 21760 .......... .......... .......... .......... .......... .......... 142 GTATTCCAAA CATACTTAGA ACAAAACTTT GAACATCTTT GTAAGAAAAC AAAGTTTAAG 21820 .......... .......... .......... .......... .......... .......... 142 AACATTTTCA CAACTAGAAA ATTAAAACTA GTAGCGAAAC TAGAATCAGA AACAGATTTT 21880 .......... .......... .......... .......... .......... .......... 142 AAAAAAAATA TACGAAATAT TTTTCTTAAA GAGGAATTGT TGTTAATATG TGTCTAAAGA 21940 .......... .......... .......... .......... .......... .......... 142 ATCTTACTGA TTCCAACAAA CTTTGCAGAA ACACGAAGTT ACCAAG-TTT AATGAACCAG 21999 || ||||||||| || || ||| |||||| .......... .......... ........AA ACACGAAGTA ACTGAGATTT TTAGAACCAC 174 TGAAGAATA- GAAGA-ATA- GAAGAACTGA AATTAATTCA CAAATCTAAA ATTTGTAAAA 22056 | || || | ||| | | | | | | || ||||| | | | |||| | || | | TAAATAAGAT GAACATAAAT TTATTTGTAA AAATAATTTA -ATCTGTAAA ACTTACCAGA 233 CACGTACCAG AATCTGAAAA AAAATTTAAT AGGAAAAAGA TCAAGTCCAC TGAATTCACA 22116 | | | | ||| | || || | |||||||| | |||||||||| |||||||||| ATCTT-GAAT ACTCTTTTTG ATAA-TT--T AGGAAAAAAA TCAAGTCCAC TGAATTCACA 289 GTGTCCCCTT AAGGAAATTA TTCCCCTCTA GTATCCGAGG TTTGATTTGG AATATGACCT 22176 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ||||| |||| GTGTCCCCTT AAGGAAATTA TTCCCCTGTA GTATCCGAGG TTTGATTTGG AATATAACCT 349 CCTAGGGTAA AATGATCTCA ATCACCAGAG TATAGATACC AAAAACTCCG GTGTCAGCGA 22236 || ||||||| |||||||| | |||| |||| |||||||||| |||||||| ||||||||| CCCAGGGTAA AATGATCTTA ATCAGTAGAG TATAGATACC AAAAACTCTA CTGTCAGCGA 409 ACCACTCAAC GGCAGTAAAG TACACTTAGA ATACTAAATT TAGTAGTTGA AGAAGAAGTC 22296 | || || || |||| |||| ||||| ||| ATCAATCCAC AGCAGGAAAG TACACGAAGA .......... .......... .......... 439 CATTAATTCT TTTTTTAAAA TGAGAGGAAA TCCCTCAATT TATAGAAGAC AAAGGGTGGT 22356 .......... .......... .......... .......... .......... .......... 439 GCGAAAAGGT TCTTATTGTG CCTTACCGGA AAGGTCACAA ACCTTTGGAA AAGTCACAAT 22416 .......... .......... .......... .......... .......... .......... 439 CTTTCAGAAT GATCGTCACC TTTCATAAAA CTCACAACTT TCCATAAAAG TCACAATTTT 22476 .......... .......... .......... .......... .......... .......... 439 TCATAAAAAT TGCAACTTTT CATAAAAGTC ACCACTTTTC ATCAAAGTCG CAACATTTCA 22536 .......... .......... .......... .......... .......... .......... 439 TAAAAGTCAC AACTCTTCAT AAAAGTCGCA ACTCTTCATT TTCCATTCAC GCCTTTTTTA 22596 .......... .......... .......... .......... .......... .......... 439 AAATCCAACA CGGATTACTT TCGCATAAAA TGGGGCTAGA CGAATGGCAA AAGGTGAAAG 22656 .......... .......... .......... .......... .......... .......... 439 ACTGCCTTTG GAAGAACATT GAAGATGACT CTATTGAAAT CTCCTATATA CTATCATTGA 22716 .......... .......... .......... .......... .......... .......... 439 GCTATAATGA TTTGTCAATT GTGCTCAAGC AATGTTTTCT GTACTTTGAT ATTTTTCCAG 22776 .......... .......... .......... .......... .......... .......... 439 AAGATCAAGT GGTCGATGTT GAGAACATAA TATGGTTGTG GATGGCCGAG GGTTTCATAC 22836 .......... .......... .......... .......... .......... .......... 439 CAAATGGAGA AGAAAGAATG GAGGATGTCG CTGAATGCTA CTTGAATGAG CTGATAAGAC 22896 .......... .......... .......... .......... .......... .......... 439 GAAGCTTGAT ACAAGTGGTA AATACATCTT GAGAAAAAGT TACTTTATGC AGGGTTCATG 22956 .......... .......... .......... .......... .......... .......... 439 ATTTACTTCG TGATCTTGCA ATACAAAAGG CATCGGAGAT AAACTTCTTT AACATTTATG 23016 .......... .......... .......... .......... .......... .......... 439 ATCCAAGAAA TCACTCCATA TCCTCTTCAT GTATTAGACA TGCCATTCAT AGTCAAGGAA 23076 .......... .......... .......... .......... .......... .......... 439 AAAGGTACCT CTAACCTGAT CTTTCTAATT TAAAGTTGAG GTCAATTATG TTCTTCGATC 23136 .......... .......... .......... .......... .......... .......... 439 CAGATTTTCA TAATCTGTTT GAACTTACAG ATGTGTTCCG ACGTTTATAT GTGTTGTAAA 23196 .......... .......... .......... .......... .......... .......... 439 TTGGCAACCT CAAGAATCTA CAGACACTTT GTGTTGTAAA TGAAACTGGA CGCTTATACC 23256 .......... .......... .......... .......... .......... .......... 439 AACTACCCCA CGAGACAGCT GACCTAATAA ATCTAAGACA TTTAGTTGCT CGGTATTGAG 23316 .......... .......... .......... .......... .......... .......... 439 AACCTCTGGT ACGTATAAAC AAACTCACTA GTCTTCATGT TCTTAAAGAC ATCTCTTGTG 23376 .......... .......... .......... .......... .......... .......... 439 ATCAGTGGGA AGATATTGAC CCTGCTTATT TAATCAATCT TCGAGAATTA ACCATGCGTA 23436 .......... .......... .......... .......... .......... .......... 439 ATATTTGGAA TTATTACTCC CTAAACAACA TTAGCAGCTT GACAAACCTA AGCACTCTCA 23496 .......... .......... .......... .......... .......... .......... 439 CATTGTTTTC TGAAGAAGTA ATATCATTCC CATCCCTTCA ATTTGTTAAT CGTTGTGAAA 23556 .......... .......... .......... .......... .......... .......... 439 AGCTCCAGAA ATTGTATTTA AATGGGAGAA TAGAGAAATT GTCTCCGTTT CCAAATTCCA 23616 .......... .......... .......... .......... .......... .......... 439 TCACAATGAT TGTTCTGAGG GACTCAGTAC TGACAGAAGA TCCGATGCCT ATTTTGGGAA 23676 .......... .......... .......... .......... .......... .......... 439 TGTTGCCAAA CCTAAGGAAT CTCGAATTGT GTAGAGCTTA TGAAGGAGAA GAAATAACGA 23736 .......... .......... .......... .......... .......... .......... 439 GCAATGATAA CAGCTTCAGT CAACTAAAGT TCATTTATCT TGGTTTTCTT TCAAAGCTAG 23796 .......... .......... .......... .......... .......... .......... 439 AAAGATGGAA TTTAAGCACA AACGCGATGC CTCTCATTAA AGCTCTTCAT ATCGATCATT 23856 .......... .......... .......... .......... .......... .......... 439 GTCCGAAGCT CATGGAGATT CCAGAGAGAA TGAAAGGCGT GAAGCGTATT TGATTATAGC 23916 .......... .......... .......... .......... .......... .......... 439 AAAGGTAAAT ATACAAACAA ATCCTAATCT TACATAATTT TGTAGAAAAA TCACCTATAG 23976 .......... .......... .......... .......... .......... .......... 439 GAGTTTTTTT TCCAAACATA TATGAAATCT CGTGTATGAA AACAGCGTAA AATTCATATG 24036 .......... .......... .......... .......... .......... .......... 439 AAATATATCT ATCTCACTTA GAGCTTAGAA TTTCGTTCAT AATTTTTGTG TATGAACAAT 24096 .......... .......... .......... .......... .......... .......... 439 ATATAAACTT TGTATAAAGT TCATTACTGA AAATCTCATA CAACTACAAC AACATTGTAT 24156 .......... .......... .......... .......... .......... .......... 439 ACAATATTCA TATCAAACTA AATACAACTA CAATACCAGC AAAAGATATG TTGCAGACTG 24216 .......... .......... .......... .......... .......... .......... 439 CAGTGGATGA AGTTGCTCCT TCCAGGTCTC GGGTTTAAAT CCTCGGTATG GAAAAATTAT 24276 .......... .......... .......... .......... .......... .......... 439 TGGTATGGAG CACTCTCCTC AAATGGCCCC TACGTGGCGT GAATTCGGGA TAGTCAGGCT 24336 .......... .......... .......... .......... .......... .......... 439 CCCACGGATA CCAGACACCA AATGGGAGAT CAGAAAAAAA TACAACTATG ATAACATAGT 24396 .......... .......... .......... .......... .......... .......... 439 AAACTTAAAA ACAATTTACA TATAACTCAT CCGGCATTAT ATGATTTTTG ATACAATTCG 24456 .......... .......... .......... .......... .......... .......... 439 TCTGTAGTTT TGAATTTGAA TGAACTAAAA TTACAATAAT CTCAAATTTT ATGTGTTTCT 24516 .......... .......... .......... .......... .......... .......... 439 CAAGAGTACA ACACAATGAA TCTTCTTAAA ACTATCATAA AATCCATCCA AGGTTACAAC 24576 .......... .......... .......... .......... .......... .......... 439 ACAAAAACTC TAGATTTGTC GGAAAAGATG GCAGAAAGAG ATCTAGAAAA TCACCTTCGT 24636 .......... .......... .......... .......... .......... .......... 439 AAGCTAATAA CAAAACACAA ATACCTTGTG GTGATTGATG ATATGTGGCA GCGAGAAGCG 24696 .......... .......... .......... .......... .......... .......... 439 TGGAAGAGTT TGAAAAGAGC ATTCTCGGAT AGCAATAATG CCAGCAGAGT TATTATTACC 24756 .......... .......... .......... .......... .......... .......... 439 ACTCGCAAAG TGGGTGTCGC TGAAAGAGCA GACAACAGAG GTTTTGTCCA TGAACTTTGT 24816 .......... .......... .......... .......... .......... .......... 439 TTCCTAAGAC AAGAAGAAAG TTGGGAACTC TTTTGTAGGA AACTAGTTGA TGTTCGAGCA 24876 .......... .......... .......... .......... .......... .......... 439 ATGATTCCAG CGATGGTAAG TCTAGTTAAG GATATGATGG AAACTATAGA GGCCTACCTC 24936 .......... .......... .......... .......... .......... .......... 439 TTGCAATTGT TGTATTGAGT GGACTACTTT AGCATGAAAG GGGACAAGAC GAATGGCAAA 24996 .......... .......... .......... .......... .......... .......... 439 AAGTTAAAGA CTGCCTTTGG AAGGACATTG AAGAAGACTC TATTGAAATC TCCTACATAC 25056 .......... .......... .......... .......... .......... .......... 439 TATCATTAAG CTTCAACGAT TTTTGTCAGC TACGCTCAAG CGGTATTTTC TGTACTTTGG 25116 .......... .......... .......... .......... .......... .......... 439 TATTTTTCCA GAAGATCAAG TGGTCGAGGC CAATAACATA ATACGGATGT GGATGGCAGA 25176 .......... .......... .......... .......... .......... .......... 439 GGGTTTCACC ATACCAAGAG GAGAAGAAAG AATGGAAAAT GTCGCTGAAG GCTTGTTGAA 25236 .......... .......... .......... .......... .......... .......... 439 TGAGCTGATA AGACGAAGCT TGGTTCAAGT GGCTAAAACA TTTTGGAAAA AAGTTACTGA 25296 .......... .......... .......... .......... .......... .......... 439 AAATGTAGGG TTCATGATTT ACTCCGTGAT CTTGCGATAT AAAAGGCATC CGACATAAAC 25356 .......... .......... .......... .......... .......... .......... 439 CTCTTTGACA TTTATCATCC AACCATTCTT AGTCAAGGAG AAAGGTACCA CTCACTTGAT 25416 .......... .......... .......... .......... .......... .......... 439 CTTTCTAATT TGAAGTTGAG GTCAATTATG TTCTTCGATC CAAATATTTG TAATGTGTTC 25476 .......... .......... .......... .......... .......... .......... 439 CAACATATAG ATGTGTTTTG ATATCTATAT GTGTTGTACT TGGAAATTAA GAAGGTGTTA 25536 .......... .......... .......... .......... .......... .......... 439 TACCTTTGTG TTAATATTTC TAGAGAAGAA GTTGTACATG AAGACATTCA AGTTCATCAA 25596 .......... .......... .......... .......... .......... .......... 439 CTTGGCTTCT GCAACACTTG GATTGTTTCA ACTTTCTCCT GTTTTTTTTT TTTTTTTTTT 25656 .......... .......... .......... .......... .......... .......... 439 GCTTGTTTTT AGTGTGGGGA ATTGGTTCAA ACAATTATTT TTTTTGGGAT TCTATTCTAA 25716 .......... .......... .......... .......... .......... .......... 439 AATGATTTTG TGATGATTTA ATTAAGGAAA AAAAGGCTCA AATATGTCGT CAAACTATTA 25776 .......... .......... .......... .......... .......... .......... 439 TAAACGACTC ATTCATGTCA TTCGCCATTA CAAAACAGGT TTCATCTTAT GCAACTCTTG 25836 .......... .......... .......... .......... .......... .......... 439 CAAAAACAGC TGAATCTAAG AAGTCGTTAA ACTTGAACAT TAACAAAACT CATTTTCGCC 25896 .......... .......... .......... .......... .......... .......... 439 ATCGGTCGTT GAAAGTTTGA TTCATCTATG TCATTTTACC TAACAGGATT CTGATGTCAT 25956 .......... .......... .......... .......... .......... .......... 439 CTTCTTGAAC TTTTGATAAA AAATGATCGT TCAAGTTTCA TAAGCTCCAA AAATACTAAA 26016 .......... .......... .......... .......... .......... .......... 439 GCTCACACAA CAATCAACGA ACGACCAGGT GATCGATCTG TCAGTCTCAG CAAGTCATAA 26076 .......... .......... .......... .......... .......... .......... 439 ATGACTTGGG ATCGCTATAG GAATGCTCTA AACGATGCAC AGAAGATAAA ATACTAAAAA 26136 .......... .......... .......... .......... .......... .......... 439 TGACAAGAAG GGTCATTACA AAATCACATG AATAAGTCGT TTCTCAAACG AAATTGATAT 26196 .......... .......... .......... .......... .......... .......... 439 AGAAGAAACA AACTTTTAAA TTTTGGTGAC ACTAAATTAT GGATCAGTAA ATTTTATTAA 26256 .......... .......... .......... .......... .......... .......... 439 AGGGAATAAA ATTGTCACTA AAGCTTTGAA GGGTATTTTC TTTCATATAA ATTTTATGCA 26316 .......... .......... .......... .......... .......... .......... 439 ACTACAACAA CATACAACAC AATTTTTATA TAACTCATCA ATCATTATAC AATTATCAAA 26376 .......... .......... .......... .......... .......... .......... 439 TTACTTTAAT ATAATTTTGA ATTCCAACGA AATAAAACTA AAATTCAATA CAAAAGTTGC 26436 .......... .......... .......... .......... .......... .......... 439 TCAATTTTTA CTAAATAAAT TTCATTTTGA GAAATCACTA AAAATTAATT TTGAGAACTT 26496 .......... .......... .......... .......... .......... .......... 439 GAACTTCAAG TTCTAACAAA ATCTTTTATG GAATAACCTC CATGGATGAA TTCGAATTAA 26556 .......... .......... .......... .......... .......... .......... 439 TTTGTGCTGA CTTATCGAAT ATTTTATATC TTTCTCTTCA AAGTTACAAA ATGCATCTTC 26616 .......... .......... .......... .......... .......... .......... 439 AAATTGAAAA GTCATGCTCC TATTTTTCCC TATAGATTCC CCAAACAAGG AAAATTATCA 26676 .......... .......... .......... .......... .......... .......... 439 TTTAAAGATT AAATTTGGAA TTTCTTATTT GACTATTAAT AATATAATTT TTTAACCACT 26736 .......... .......... .......... .......... .......... .......... 439 ATGAAATTTT TAAAATCATA AATTTTAAAA ATCTTTCGTT CCTAGTTAAA ATGTCGTAAC 26796 .......... .......... .......... .......... .......... .......... 439 TAGTCTTTCC ATAAAACAGA TGTACAATTA ATTAATTAGC TAATTAAGTG ATTTAGGTGG 26856 .......... .......... .......... .......... .......... .......... 439 AGGAACAATT AAACAAACTC TTCTAATCTG AATATTTAAA TGCCTTTAGT CTAATATGAG 26916 .......... .......... .......... .......... .......... .......... 439 ATATCTTTTT AAATAGAGGG AAAAGGGTCT GATATACCCC TCAACTTTGT CATTTGGAGT 26976 .......... .......... .......... .......... .......... .......... 439 TGATATACCC CTCGTTATAA AAGTGGCTCA TATATGCCCT TACCGTTATA TAAACGGCTC 27036 .......... .......... .......... .......... .......... .......... 439 ACATATACCC CTACCGTTAC AAAATGGCTC ACATATATCC TTCATTTCAC GAAAGCTAAA 27096 .......... .......... .......... .......... .......... .......... 439 AAATTAGTTT TAAATTTATA TTTATTACTT CTAAAAAAAA TTTAAAAATT ATTTAGGGGT 27156 .......... .......... .......... .......... .......... .......... 439 ATATATGATT CTTCTATCAA AGTTCAAGGT ATATTTTAAT TTTTTTTCAT ATATTAATTA 27216 .......... .......... .......... .......... .......... .......... 439 TTTTTTGACT TCTTTTATTA TAATTATTTG AATTTCTTAT TCTTATTTTG TTTTTTCTTT 27276 .......... .......... .......... .......... .......... .......... 439 CATTCCTTAG TTTAAAGAAT AAAAAATTAA ACTATTTTTT TTGTGTGTAT TGTAATTTAA 27336 .......... .......... .......... .......... .......... .......... 439 TTTCGTATTT GAAGAAAAAA TTTGGTCATC TACAATAAGT TTTACAAGAA TATTAGTGAA 27396 .......... .......... .......... .......... .......... .......... 439 ACATAAATAA ATTTGATTAT CAAAATAATA ATTATAAACT AGTCATTGAA ACAAAAAAAA 27456 .......... .......... .......... .......... .......... .......... 439 AAGTCAAAGA AAATATGTTT GACGAGGATT GGGATTATAT TTTTTAGAAA AAAAATAATA 27516 .......... .......... .......... .......... .......... .......... 439 AAAATTTAGA TTAAAATTAT TTTTTTTTCA TTTCCGTTAG AGGAAAAGAG TATATCTGAG 27576 .......... .......... .......... .......... .......... .......... 439 TCATTTGTTT ACAAGTAGGG GTATATATGA GTCACTTTCA TAATAAGGGG TATATCAGCT 27636 .......... .......... .......... .......... .......... .......... 439 CTAAATGACA AAGTTGAGGG GTATATCAGA CCCTTTTCCC TTAAATAAAT AATAGTTTTT 27696 .......... .......... .......... .......... .......... .......... 439 GGAAATGTAT AAGGCCAAAA TCATTAGCAC AAATACCCTA ATTTTGGGGT GAGTTTTAAG 27756 .......... .......... .......... .......... .......... .......... 439 CTTCATATAA ATGTGTTTTA ACTTGATCTC ATTTCACATT TATGCCCTTC AATTTTAGGT 27816 .......... .......... .......... .......... .......... .......... 439 CTGCACAGGT AGATACTTAA ACTTGTATAA AACTGAACAT GTAGACACGT GAGTCCTACG 27876 .......... .......... .......... .......... .......... .......... 439 CGCCATAATA CACACAGGAC ATAAATTGTC ATGTAGGATA CCACATATGA CGTGCGTGTC 27936 .......... .......... .......... .......... .......... .......... 439 TATTTCATCA AATTTATAAA TCAAGTGTCT ACTTGTGCGC ACTCAAAGTT GCAGGGCATA 27996 .......... .......... .......... .......... .......... .......... 439 ACTGCAAGTA TGACATAATA TATAAATATG ACTCTTAACT CGACGTCAGT TGACAATTAT 28056 .......... .......... .......... .......... .......... .......... 439 GACATTTAAC TTTAGGTGTG CACAAATAGA TATTTAAACT TATATAAAGT TGAACAAGTA 28116 .......... .......... .......... .......... .......... .......... 439 GACACATTCG TCCTACATGG CACCCTACAT GGAACTTTTG TGTCCTACAT AGCGTTCTAC 28176 .......... .......... .......... .......... .......... .......... 439 GTGTATTATG TCATGTAAGA CATGTGTGTC TGCTTGTTCA ATTTTATAGA AGTTTAAGTG 28236 .......... .......... .......... .......... .......... .......... 439 CTTACTTGTG CACAGTCAAT GTTGTTAATT GACGTTAAGT TAAGAGTCAT GTTTATATAT 28296 .......... .......... .......... .......... .......... .......... 439 TATGACACAA AAATATGTTG ATTAAAATAT CCTTAGTTAC AATCTAATTT TGATGGACAT 28356 || |||| |||| ||| || ........AA AAATGTGTTT ATT-AA.... .......... .......... .......... 456 AACTTTATAG ATAACGTTTG CCTTGTCGGA CTTATTGCCA AGAGTCTTTC TGAAACAACC 28416 .......... .......... .......... .......... .......... .......... 456 AGTCTATCTT TACGAGATAG TGATAAAATC GATCGACATA ATATCTTGTG CCTTTAGAGC 28476 .......... .......... .......... .......... .......... .......... 456 ATAACTTGTG TCATGCAATT TTAAATTCTT GCCTTGCACT TAGTAGAGAA TATATACTTC 28536 | ||||| ||| | .......... .......... .......... .........T AAGTAG-GAA T......... 467 TCTTTATCAT TTACCTCAAC TCTATCAACT TTCTACTTTT ATTACTTTTT ACTCTGTTGG 28596 .......... .......... .......... .......... .......... .......... 467 ATTTTTTATG CTTTAAATAC TCAGTTCCAT CATAACAATT ATCAAACACT CAAACTACTG 28656 .......... .......... .......... .......... .......... .......... 467 CTTCCAATAT TAATTTTTCA CATAGAGACT TTACCTTTTG CAAACAAAAA AGTGTTAAAT 28716 .......... .......... .......... .......... .......... .......... 467 TTCCATACAG CTACCCCTTT TTTCAATCAA AAGTAATAGT AGTATTCCTA AAGATGACTG 28776 .......... .......... .......... .......... .......... .......... 467 ATGCATTTGT GTCATTTGCA GTTCAAAAAT TGGGTGATTT CCTCGTACAA CAAGTTTCGC 28836 .......... .......... .......... .......... .......... .......... 467 TGCGTAAAAA TCTGAGAAAG GAAGTTGACT CGCTGAGAAA TGAGCTACTC TTCATGCAGT 28896 .......... .......... .......... .......... .......... .......... 467 CTTTCCTCAG AGAGGCAGAA CAAAAGCAAA GTGGTGATCA AAGAGTTCAA CAGTGGGTGT 28956 .......... .......... .......... .......... .......... .......... 467 TTGAGATCAA CGCTATTGCT AATGACGCTG TTGCTATACT CGAGAGTTTC AGCTTCGAGG 29016 .......... .......... .......... .......... .......... .......... 467 CTGGTAAAGG TGATGATGAT AGATTTGTTA GTCGTCTCAA GGCTTGCGCT TGCATATGTA 29076 .......... .......... .......... .......... .......... .......... 467 GGAAGGAGAA GAAATTATAC AATGTAGCTG AGGAGATCCA ATCACTCAAG CAACGAATCA 29136 .......... .......... .......... .......... .......... .......... 467 TGGATATCTC TCGCAAACGA GAGACTTATG GTATTACAAA TATCAATTCA GGAGAAGGGA 29196 .......... .......... .......... .......... .......... .......... 467 CAAGTAATCA GGTTAGAACA ATGAGGAGAA CTACCTCATA TGTGGATGAG CAGGATAACA 29256 .......... .......... .......... .......... .......... .......... 467 TTTTTGTTGG ACTTCAGGAT GTCGTAGAAA AATTGCTAGC TCAACTTCTC AAAGCGGAGC 29316 .......... .......... .......... .......... .......... .......... 467 CACGTAGAAG TGTCATCTCC ATTCATGGCA TGGGCGGATT AGGGAAGACC ACTCTTGCAA 29376 .......... .......... .......... .......... .......... .......... 467 GAAACCTCTA CAACAATCCT AATATAGTGT CAAGCTTCCC TACACGCGCT TGGATATGTG 29436 .......... .......... .......... .......... .......... .......... 467 TTTCTCAAGA GTACAACACA ATGGATCTTC TTAAGAATAT CATAAAATCC ATCCAAGGTC 29496 .......... .......... .......... .......... .......... .......... 467 GCACTAAGGG AACTCTAGAT TTCTTGGAAA GGATGACAGA AAGCGATCTA GAAATTTACC 29556 .......... .......... .......... .......... .......... .......... 467 TTCGTGATCT ATTGAAAGAA GGCAAATACC TTGTAGTGGT TGATGATGTA TGGCAGAGAG 29616 .......... .......... .......... .......... .......... .......... 467 AAGCATGGGA GAGTTTGAAA AGAGCATTCC CAGATAGCAA GAAGGGCAGC AGAGTTATTA 29676 .......... .......... .......... .......... .......... .......... 467 TTACCACGCG GAAACATGAT GTTGCGGAAA GAGCTGACAA CAGAGGTTTT GTCCATAACC 29736 .......... .......... .......... .......... .......... .......... 467 TTCGTTTCCT AAGCCAAAAA GAAAGTTGGG ACCTCTTTTG TAGGAAACAA CTTGATGTTC 29796 .......... .......... .......... .......... .......... .......... 467 GGGCAATGGT TCCAGAAATG GTAAGGATAG CTAAAGATAT GGTGGAAAAG TGTAGAGGCT 29856 .......... .......... .......... .......... .......... .......... 467 TACCTCTTGC AATTGTTGTA TTGAGCGGAC TACTTTCACA TAAAAGGGGG CTAGACCAAT 29916 .......... .......... .......... .......... .......... .......... 467 GGCAAAAAGT GAAAGATCAC TTTTGGCAGA ACATTCAAGA TGACTCCATT CAAATCTCCT 29976 .......... .......... .......... .......... .......... .......... 467 ACATACTATC ATTGAGCTAC AACGATTTGT CAACTACACT CAAGCAGTGT TTTCTGTACT 30036 .......... .......... .......... .......... .......... .......... 467 TTGGTGTTTT CCCAGAAGAT CAAGAGGTCG ACGCTGAAAA GATAATACTG TTGTGGATGG 30096 .......... .......... .......... .......... .......... .......... 467 CCGAGGGTCT CATACCAAAT GGAGAAGAAA GAATGGAGGA TGTCGCTGAA GGATTCTTGA 30156 .......... .......... .......... .......... .......... .......... 467 ATGAGCTGAT AAGACGAAGT TTGATACAAG AGGTACGTTC CTTTTGGGAA AAGGTTACTG 30216 .......... .......... .......... .......... .......... .......... 467 TGTGTAAGGT TCATGATTTA CTTCGTGATC TTGCCGTACA AAAGGCATTC GATATAAAAT 30276 .......... .......... .......... .......... .......... .......... 467 TCTTTGACAT TTATGATCCA AAAAAGCACT CCATATCCTC CTTATGCATC AGACATGTCA 30336 .......... .......... .......... .......... .......... .......... 467 TTCATGGTCA AGGAGAAAGG TACCTCTCAC TTGATCTTTC TCACTTGAAG TTGAGGTCAA 30396 .......... .......... .......... .......... .......... .......... 467 TTATGTTCTT CGATCCAGAT TTTCGTAACA TCCATCTTAC AAACTTCAGT AGTGTGTTCC 30456 .......... .......... .......... .......... .......... .......... 467 GACATATATA CGTGTTGTAC TTGGATATTG GAGGTTATGT TATGTCTGAT GTCATAGGAA 30516 .......... .......... .......... .......... .......... .......... 467 GTTTGTACTA CCTCAAGTTG TTAAGCTTGA GAGGTGTCTG TAATATTCCC TCTTCCATTA 30576 .......... .......... .......... .......... .......... .......... 467 GCAACCTCAA GAATTTACAG ACACTTCTTG TCGATGACCA TGGAGGGTTT AGCCGTCTAT 30636 .......... .......... .......... .......... .......... .......... 467 CCCAAAAGAC AGTTGACCTA ATAAATCTAA GACATTTAGT TGCTCCATAT TCAGAGCCTC 30696 | | || | || || | | |||| || || | .......... .......... ......ATCA GAAAATTCGT TAGTAAATAT TCTGA-AGAC 500 TGAAATGTAT AAACAAACTC ACGAGTCTTC AAGTTCTTAA AGGCATTCGT T 30747 |||| |||| | ||| | | || | | | |||| || ||||| | | | TGAATGGTAT TTATAAA--C AAGAATAAT- ATATTCTGAA AGGCAACCCT T 548 hqPGS_C04HBa0127E11.1+_SGN-U323277+ (21641 21672,21969 22266) ******************************************************************************** EST sequence 21 -strand 921 n (File: SGN-U342909-) 1 ATTGAAGAGG CAAGCCAGGA TGATTAGGGG AGCAAGCATN CCTCACAATT CCACAGATAG 61 AAATGTACTG ATNCAGTGTC CAAGCATTGC AGATAAATGA GATTTATCTA GCAAAAATTG 121 AGGTTCTCAT AGTCTTACCA CCCCCCATAT ATCTACCAAA CAAGGACTGC NTGCTGTGTT 181 NNTAAAAAGG AAGATATGTA AAGTTNGGCA GCCACATGTA GGTTCACACT AATCGAAAAT 241 TCAGCAACAC GATGCNTAAG ATCANCCTCG TTAGGAAAAG CTTTATTATG CAGACCCAAC 301 TTTGCAGGGG GGTCAAGATT GTACATTTTC TTTAGGCATT TCTACGTTGA TTTGGACAAT 361 GGAATCGATT ACAACAATGT GTGGACTAAA CTAAGAATGA GTATTGGAGG GCAACTTGTG 421 AGAATTCATA CGTGGACTCC TACTTTCAGA CCGGATGAAG AAACACCGAT TGTTTCTATT 481 TGGGTAGCCT TTCCGGAGCT CCCTTGGCAT TGTTACTACA AGGAATTTTT GACTGTTCCA 541 CTCTCCTCCA TTAGAGAAGT CCTATACCTA GACATGGCAT CTACTCAAGA CACTAGAGGA 601 AGTCTAGCCA GAGTAAAAAT GAAGGTTGAT CTCACTCAAG ACAGGCCCTC CCGTGTGGAT 661 TGACTATGAT GAAGAAGATA TTACCGTTGG AAGGTGGCAA GCTGTGCGAT ATCAAAATAT 721 TCCACACTAT TGCACTCATC TCGTATTTCA AACATACTTA GAATAAAACT TTGAACATCT 781 TTGTAAGACA ACAAAGTTTA AGAACATTTT CACAAATGAA AAATTAAAAC TAGAGACTAG 841 TTCTCTCCTC GTGCCGAATT CCTGCAGCCC GGGGGATCCA CTAGTTCTAG AGCGGCCGCC 901 ACCGCGGGGA GCTCCAGCTA T Predicted gene structure (within gDNA segment 12933 to 23493): Exon 1 15811 15818 ( 8 n); cDNA 711 718 ( 8 n); score: 0.750 Intron 1 15819 20094 (4276 n); Pd: 0.743 (s: 0), Pa: 0.236 (s: 0) Exon 2 20095 20111 ( 17 n); cDNA 719 735 ( 17 n); score: 0.471 Intron 2 20112 21753 (1642 n); Pd: 0.305 (s: 0), Pa: 0.000 (s: 0.94) Exon 3 21754 21850 ( 97 n); cDNA 736 832 ( 97 n); score: 0.928 MATCH C04HBa0127E11.1+ SGN-U342909- 0.928 122 0.132 C PGS_C04HBa0127E11.1+_SGN-U342909- (15811 15818,20095 20111,21754 21850) Alignment (genomic DNA sequence = upper lines): ATTAAAAGGT TCTATTGCAA TCCCATCATC AATGAATGTT TCATTTTCCT GCAACCAGAG 15870 || |||| ATCAAAAT.. .......... .......... .......... .......... .......... 718 ATATTCCATT AGTTACACCA GAAAGGAATA CAAGAAATAC AAAGTTTAGC CATAGAGCAA 15930 .......... .......... .......... .......... .......... .......... 718 TTAGAATATG CAAAATTTGA CATTAATGAT AATTCCAAGT ACTTCAGTTT GTTTATAGGC 15990 .......... .......... .......... .......... .......... .......... 718 TGGAGAGCCG AACCAAAGAA CAAATAACAA TATAATTCCA CGAATTTAAT GTGACAGCAC 16050 .......... .......... .......... .......... .......... .......... 718 ATGAAGCAGA AATAATGAAA TTTAATTAAC ATTTATGTTT TGAGAGTTTA AGTAAAAGAA 16110 .......... .......... .......... .......... .......... .......... 718 ATAAAATGCT CGGAAAATAA AACAGAAGGA AACAAAGGAA GTAAAGCTAC AAATTTTATT 16170 .......... .......... .......... .......... .......... .......... 718 TCCATTGTTT CATTGGCGAG GGAATTATGA AGAACAGGAA AAATTTATTC AAGGGAACTC 16230 .......... .......... .......... .......... .......... .......... 718 AGATAAATTC TTTTCTTCTT TGTAATCCTA TTCTCATCTC TATGCAAATT AAAGTACGTG 16290 .......... .......... .......... .......... .......... .......... 718 CAGAATTTAA ATCTTACCCA TTTTCTATTT GTAAAGTTCA AAAACCCACA GTTCATAAAG 16350 .......... .......... .......... .......... .......... .......... 718 TCCAAGGAAG AACTCTACAT AAGATAGAAT GAGACAAGCC TATTGGACAC AGAAACAACG 16410 .......... .......... .......... .......... .......... .......... 718 ATTCATGCTC AGTGAATTTA AAAGTGAAAA GTGCAAAAAA AGCGTCTGCG AGGCTTGAAA 16470 .......... .......... .......... .......... .......... .......... 718 TGAATAGGAG AGAAGTAAGG CACATGCTTT ATTAAGTGAA GCGCACAATT ATTTGATGAT 16530 .......... .......... .......... .......... .......... .......... 718 GATTCCTTTA CACATGGCAT GCAACCTTAT GCTATTCCTT TTGATGAGCC GCTATATGCT 16590 .......... .......... .......... .......... .......... .......... 718 AAGAAAAAAC ACCATTCTGT CTCCTTGACC TTTGTTTCAA GAGCATAAGG ATTGATATGT 16650 .......... .......... .......... .......... .......... .......... 718 ATTAGTGGGG TTTTTAAAAT GAAGTTACAG ATGGTCCCTA TTTTGCTTAC GTTACTACTT 16710 .......... .......... .......... .......... .......... .......... 718 ACTACTTGGG GAATATAATT AGCAATCATG ATTATTTATG GTTTTCAATT GTGCATGAGT 16770 .......... .......... .......... .......... .......... .......... 718 ACCCATATCT CAGCTCTTTT AAAGAAGATT ACCCATATCT AAGTTGTTCT AGCTAAACAC 16830 .......... .......... .......... .......... .......... .......... 718 GCAGCACAAA TCATGCCAAG CCCCAAAAAA GTTTGTAATA ATCCTAGTAT CACTTCCTTA 16890 .......... .......... .......... .......... .......... .......... 718 TCAAGAGATA TGAAGTAGAC ATCAGATATC CACAAAGTAC CTAACTACAA TCAAACAATT 16950 .......... .......... .......... .......... .......... .......... 718 ATGGAATAAC AGATATTGGA AGGACAAACC TCATATTCCA CTTCTGCCCG CGATATGTCA 17010 .......... .......... .......... .......... .......... .......... 718 GCTATTTCAC CTTCGTTTTC TTCATCAAGG AGTTCCGCTG TTATTTGATT CCGCCGTGCC 17070 .......... .......... .......... .......... .......... .......... 718 GAACGCTCTT TGGCTGCATT GCGAGGATCT GTCCGCCCAC TAGGTTTATC TTCACACCCA 17130 .......... .......... .......... .......... .......... .......... 718 TCAATCGTGG TATCGCCCTG CTTTGCCTTC TTACCCTTTG GGAACCTTAC ACGCTTCTGC 17190 .......... .......... .......... .......... .......... .......... 718 CTGTGATGTT GAGGAAGAAA GCAACATGTC AATGCAAACA TCCTTAAAAT CCAGCATCAT 17250 .......... .......... .......... .......... .......... .......... 718 AAATGAAACT ATTTTGAACC CAACAAATGA GGTTGTCATA GAGCATGGCA GACGTCACAT 17310 .......... .......... .......... .......... .......... .......... 718 GGAAAAAAAA AACGCTATTT GAAGTTGTAT TACTTGCTAT TGCTGTCTCA TGAAACACAT 17370 .......... .......... .......... .......... .......... .......... 718 TATCTTTACA AGGAAAATAA CAGTAGGTAA AAAAGATCTA TTTTTTCTCG TACTAAACTC 17430 .......... .......... .......... .......... .......... .......... 718 ATGACAGTCT CAACAACAAA ATACAACCTC TAATCTGAAA AAGAAAGCAG TCTACTTTAT 17490 .......... .......... .......... .......... .......... .......... 718 CTTCAAAGAC AAACTATTGA GCACTGGAAT GAAATGATCA CAGTTAGAGT AAATAGATAT 17550 .......... .......... .......... .......... .......... .......... 718 AGAGATTACA TATAACTAAT CCAATTAGTT TGGGCATGAG GCATAGTCAC TGTATAATTC 17610 .......... .......... .......... .......... .......... .......... 718 CTTAAATCTC CAACAAATAA AGTATTTTCT TGCATAGTTC TCTCAAGGCC AAACACACCC 17670 .......... .......... .......... .......... .......... .......... 718 TTCTTTATTA GACATTTTCT AGGTACTAAG AATACACAAT CCACCCATTC CCACTAGATT 17730 .......... .......... .......... .......... .......... .......... 718 TTTGCTCCAG GTTCACATCA TATATGAAAT CAACGGTAAT TCAGATTAGG AAAAAACAAG 17790 .......... .......... .......... .......... .......... .......... 718 CTAATAGAAT CTGGGCGCAT TTGCAGAATA ACAAAAATAG ATAGCAGCTG AAAGAAAGCA 17850 .......... .......... .......... .......... .......... .......... 718 AATCCAAGTA CATACTCCTG AACTCCTCTG GGAAGCTCCT AAAATTCTTA CAATAATGAC 17910 .......... .......... .......... .......... .......... .......... 718 ATAATAAATC AATCCCAGCA GAAGCAAAAA ATACTATGTG TATTCTCCCT ATCTATTTAA 17970 .......... .......... .......... .......... .......... .......... 718 GCCTCAATTG ACACAGTAAA GTGATATCTA TGTGGATGGG AGGTAGTAGA GATCCCATAG 18030 .......... .......... .......... .......... .......... .......... 718 GATAGAATTA ATTGAGTTAT AAAAACAAAA ATGAGCTTCC TTACTTATTT ATCTATTTTT 18090 .......... .......... .......... .......... .......... .......... 718 ATCTTTCTAT TGATACAAAA TACTCCCCCT AGTTCACTTC TTTCGTTTTT TAGACAACTG 18150 .......... .......... .......... .......... .......... .......... 718 TAGTTACTAG ACCAGCTTAT GCGCACCTTA ACTAATTACA TAGATATCTG TCGCTCCCCA 18210 .......... .......... .......... .......... .......... .......... 718 CCAAAACAGC TATAAAGTAA CTCTATCCTC AAGGCTAGGA CAGGTAGAAA GAAATCACTT 18270 .......... .......... .......... .......... .......... .......... 718 TTCTTCTCTA TGTTGGAATT TGAACCTTAG ACCTCATGGT TCTCAACTCA CTTCATTAAC 18330 .......... .......... .......... .......... .......... .......... 718 CACTAGATCA CACCCTTCCT TATTCACTTT TTTATGAAAT CAATGTCATT AAATTTCAAT 18390 .......... .......... .......... .......... .......... .......... 718 GGTAAAATAA ATTGGTTTCC TTTCGCATTA TGTTTTTATT ATGATTGTGG TGTTCACGCC 18450 .......... .......... .......... .......... .......... .......... 718 AGTTTTCCCA CACCTCAACT AATTCCACCT CTCACCATTA ACAACTATCA GGTAACTCTG 18510 .......... .......... .......... .......... .......... .......... 718 TCCACCAAAA CTAGGACAAA TAGAAAAAAA TCATCTAGCA TTTTTGTCTC TACTAGAAAT 18570 .......... .......... .......... .......... .......... .......... 718 TGAACATTAG ACCTCATGAT GCTCAACCCA CCTCCCTTGA CCACTAAGCC ACACCCTTTG 18630 .......... .......... .......... .......... .......... .......... 718 AGAAGTTTTT TGTTAATTTT AATGACCTTG GTATCCAAAT ACATTGGATA CGTCCCACCT 18690 .......... .......... .......... .......... .......... .......... 718 CCCACCAAAT AACTTTGTTG TCTTCCCTGA GTTTTATAAG ACCTCAGAAT TCTCAACCAC 18750 .......... .......... .......... .......... .......... .......... 718 TTCATTAATC ACTAAGCCAC ACCCTTGGGG TTTCACCACT ATGTTTCAAA CATATACAAA 18810 .......... .......... .......... .......... .......... .......... 718 ATATTATTTA CTAAGAAATC ACAAACTTAC AGCTCAAATT TTATATTCCG AAATCAATAT 18870 .......... .......... .......... .......... .......... .......... 718 AACAAATGAA TATGAGCTTT CATCTGTGCA GAATCCCTAA GTATGTTCAG AATAAATTAG 18930 .......... .......... .......... .......... .......... .......... 718 GGCACAAAAT CACATGAAAT TTTTCAAAAA TAAAAAATAA AAAGAAAGAA GGAAGGAAAT 18990 .......... .......... .......... .......... .......... .......... 718 AGTTACTCTG GAGCTTTATT GGAGTCATCG TCCTCAACGA AGGGACGTTT GGCACGTCGC 19050 .......... .......... .......... .......... .......... .......... 718 GATGAACCTT CTTCCATGGC GTAATCGGCA ATTGATATGA AGGATTCAGA AAGGAAAAAA 19110 .......... .......... .......... .......... .......... .......... 718 AATGAAGGGG CAAAGTGAAG AGAGAGCGGT GGTACTGGTA AACATCAAAA AAAATAATAA 19170 .......... .......... .......... .......... .......... .......... 718 TAATAAATTC TATCTTACAA ACTATAATAC CTTTTTTAAA TTGATAAATA TCTAAAATTA 19230 .......... .......... .......... .......... .......... .......... 718 ACATTACCAA TATTAATCTT ATTGGATAAA TTCAAATAAG TTATTGATAA TATAGAAAAA 19290 .......... .......... .......... .......... .......... .......... 718 TAATATTATA AATTATTAGT TGAGAAATGT GACAACACAA AAAATATACT AATAGCTGAG 19350 .......... .......... .......... .......... .......... .......... 718 ATAATTTGTA AAATAAAATT ATCATTTTAC TTTATTATGG ATATTCATGT CTACTAGTCA 19410 .......... .......... .......... .......... .......... .......... 718 TTTTTATCAT TAATTAATAT TTAGGATGAT GATTATTATT ATTATTATTA TATATATATA 19470 .......... .......... .......... .......... .......... .......... 718 TATATATATA TATATATATA TATAAAAGAG ATAAAAATGT AAGATCAAAT TGTTTCATAA 19530 .......... .......... .......... .......... .......... .......... 718 ATATATAGAA TAAATTACAA TTTACAAATA TTAATATTTT TTTAATTTAA TCACTCTGTC 19590 .......... .......... .......... .......... .......... .......... 718 ACAGTTTTGC ATAGATAAAA ATGATCGATA AATTATTTCG TTCGACATTT GCACAAGGAT 19650 .......... .......... .......... .......... .......... .......... 718 TTTACTTTTA TAAAAATGAT ATTTCAAAAA AATTGTATAA CTAATTATTT TCATAAATAA 19710 .......... .......... .......... .......... .......... .......... 718 ATTACTTATG TTGAATAGTT TAATTTGGTT ATTAGTTCAC TAACTCCTTG TTATAAAGAT 19770 .......... .......... .......... .......... .......... .......... 718 ACAATTTATT TCATTTTAAT GGTATTATTG AATAAGTAGT ATTATAGGAT TGTTTTGGTA 19830 .......... .......... .......... .......... .......... .......... 718 TTTCAATTTT TATTTTTTTT TTGTTTAACT CAATATTATA GGATTATTTG GTATTTCAAA 19890 .......... .......... .......... .......... .......... .......... 718 TATAATTTTT TGTTTAAGTC AATATTCAAA TTTTGTGTAT AAAAAGTACA TAAATTTGGT 19950 .......... .......... .......... .......... .......... .......... 718 ATAAAATATG TATATAACTA TATAAAATTT GTATGAAGCT CATGTTAGAT ACTATTGCAT 20010 .......... .......... .......... .......... .......... .......... 718 ACAACATTCA TATCAAACTA AATACAACTA CAATACCAAC AAATGATATG TTGCAGTAGA 20070 .......... .......... .......... .......... .......... .......... 718 TGAGTTACTC CTGTCGGGTT TCAGATTCGA ATCATCAGTA TGTAAAAATT CTTGATAGAG 20130 |||| | | | | .......... .......... ....ATTCCA CACTATTGCA C......... .......... 735 TGTGTTTTCC CTCAAATGAC CCTACGTGAC ATGAATTTGG GAAAGTCAAG CTTCAGTGGA 20190 .......... .......... .......... .......... .......... .......... 735 TACTTAACAC TTAGTGAGAG ACTAGAAAAA AAAATACAAC TATTATAAAT ATACCAAACT 20250 .......... .......... .......... .......... .......... .......... 735 TAAAAAATAA TTTACTCATA ACTCATCCGC CATATTATGA TTATCATTTG ATTTTTGATA 20310 .......... .......... .......... .......... .......... .......... 735 CAATTGTATG TAATTTTGAA TTTAAACGAA GTAAAATCAA AATTTCAATT CGAAACTAAT 20370 .......... .......... .......... .......... .......... .......... 735 TCGAATTTTA CCCAAATAAT CTCAAATTTT ATATTATTAG TCTCCTCGAA ATTCCATTTC 20430 .......... .......... .......... .......... .......... .......... 735 TTTGGAGAAA TCACCAATTG AAACGAAAGT TTTCCTATAG ATTCCCCAAA CAAGGAAAAT 20490 .......... .......... .......... .......... .......... .......... 735 TAAAAAGAAA TCCTTAATTA TAATCTGATT TCGTTCGATA AAACTTTTAA AATAATGTTT 20550 .......... .......... .......... .......... .......... .......... 735 GTTCTAGGAA GACTTGTTGT TGAGTTTCTT TCTGAAATAG TCTATCTGCC TCCACGAGGT 20610 .......... .......... .......... .......... .......... .......... 735 ACTCGTACGA TCTACATACG CTTTAGCTTT TAATTTTTGT CTAAAGACAC AACTTGTGTC 20670 .......... .......... .......... .......... .......... .......... 735 ACTGAATTTA TAAAGTATAA CTCGTGTCAT GCAATTTTAA ATTCTTGCCT CAACACTTAC 20730 .......... .......... .......... .......... .......... .......... 735 CAGAGAATAT ATACTTTTCT TTACTATTAA CCTTAACTCT TTCTGCTTTA AGACTTTTTC 20790 .......... .......... .......... .......... .......... .......... 735 TAATGTTGGA TTTTCTTAAG CTTTAAATAC TCATTTCCAT CATAACAATT ATCAAACTCT 20850 .......... .......... .......... .......... .......... .......... 735 CAATCTACTG CTATACTTGA GACTTACAAC TTTGAGGCTG GTAAATGTGC TAGTCGTCTC 20910 .......... .......... .......... .......... .......... .......... 735 AAGGCTTGCG TTTGCATATA TAGGAAGGAG AAGAAATTAT AGTATGTGGC AGAGGAGATT 20970 .......... .......... .......... .......... .......... .......... 735 CAATCACTCA AGCAACGAAT CATGGATATC TCTCGCAAAC GAGAGACTTA TCGTATTACA 21030 .......... .......... .......... .......... .......... .......... 735 AATATCAATT CAGGAGATCA AGGGCCAAGT AATCAGGTTA CAATATTGAG GAGAACTACC 21090 .......... .......... .......... .......... .......... .......... 735 TCATATGTGG ATGACCGCGG TTACATTTTT GTTGGATTTC AGGAATGTTG TACAAACATT 21150 .......... .......... .......... .......... .......... .......... 735 GCTAGTTGAA ATTCTCAAAC CAGAGCCTTG TCGAAGTGTC CTCTGCATTT ATGGCATGGG 21210 .......... .......... .......... .......... .......... .......... 735 CGGTGTAGGC AAGACCACTC TTGCGAGAAA CCTCTACAGA AGTCCTAGTA TATAGTCAAT 21270 .......... .......... .......... .......... .......... .......... 735 ACCTTCCCTA CACGTGTGTC GATATGTGTT TCTCAAGAGT GCAACACAAT GGATCTTCTT 21330 .......... .......... .......... .......... .......... .......... 735 AAGACTATCA TAAAATCCAT CCAAGTTTGC ACCAACGAAA CTCTTGATTT GTTGGAAAGG 21390 .......... .......... .......... .......... .......... .......... 735 ATGGCAGAAA GAGATCTAGA AATTTACCTT CGTAAGCTAT TAACAAAACA CAAATACCTT 21450 .......... .......... .......... .......... .......... .......... 735 TTGGTGGTTG ATGGTGTGTG GCTAATAGAA GCATGGAAGA GTTTGAAAAG AGCATTTCCG 21510 .......... .......... .......... .......... .......... .......... 735 GATAACAATA ATGGCAGCAG AGTTGTTATT ACCACACGCA AAGTGGATGT CGCTGAAAGA 21570 .......... .......... .......... .......... .......... .......... 735 GCAGACGACA GAGGTTTTGT CCATGAACTT CGTTTCCTAA GCCAAGAAGA AAGTTGGGAT 21630 .......... .......... .......... .......... .......... .......... 735 TCTTTTGTAG GAAACTACTT GATGTTCGAT CAATGGTTAC AGCAATGGAA AGTCTAGCTA 21690 .......... .......... .......... .......... .......... .......... 735 AGGATATGGT GGAAAAGTGT AGAGGCTTAC CTCTTGCAAT TGTTGTATTG AGCGGATTGT 21750 .......... .......... .......... .......... .......... .......... 735 TGTTCATCTT GTATTCCAAA CATACTTAGA ACAAAACTTT GAACATCTTT GTAAGAAAAC 21810 |||||| ||||| |||| |||||||||| | |||||||| |||||||||| |||||| ||| ...TCATCTC GTATTTCAAA CATACTTAGA ATAAAACTTT GAACATCTTT GTAAGACAAC 792 AAAGTTTAAG AACATTTTCA CAACTAGAAA ATTAAAACTA 21850 |||||||||| |||||||||| ||| | ||| |||||||||| AAAGTTTAAG AACATTTTCA CAAATGAAAA ATTAAAACTA 832 hqPGS_C04HBa0127E11.1+_SGN-U342909- (21754 21850) ******************************************************************************** EST sequence 1 +strand 1190 n (File: SGN-U322569+) 1 CTTTTGGGGT AATTTTTTAT TCTTTTATTT TTCGGTAACA AGTTAACCAG AGTTCCGCCG 61 GCATCCTCTT AGTTTTTTTT CCGGGGAAAC CAGCTTCCAA CTCCACCGCT ATAGCAGCAA 121 ATGACCAGAA CACCTTCCCC TTTTCCATTG TTTCTAGCAA TACCCTCGTC CCCCTTTTCA 181 TCGTTGCAAC CAGATCAGCG AACCAGAACC GAAATCAACT GTTCCGATGA AAAACCAAGT 241 CTTCACGAGT CCTACAAAAA AAACCTATAA TCGACTTCCA CAACTAAAAA CCCGCTGGAA 301 ACCACCACCT CACGCCAGAC AGACTACAAC CAGACCAAAC CCCTCTTCAT TTTTCTCCCT 361 TTTCCGGTGA AATAGTCACT GAATATAACA CCAAAATCGC TGTCAGATCC ATTCCTCTTC 421 CCCTTTCACG ATTCCTCTTG TATTTTTGCA GGTCATGACT GAAACCCATG AGCTCGGAAC 481 CATGAAACAA CCAGCGCCAA CAATGGCAGA AATCAATCAG ATCTCACAAC CAGTAGCTCC 541 AAAGTCGGAG CAAACACGAA TACCGATCCA AACCAGCAAC CTAAAGTTCA AAATTCCAGG 601 AAATTTCAAT GTTTTCATCC AATATATGGT AGAAATTTCT AACAATTTTA TAACTTTTCG 661 ATGATTTGGT TCACTGCTAG TGTTTGAACT TTGTATTTGA TTGAAGATTT TGTGTTGTTT 721 ACAAATATCC TCTTTTAAGT TTATCTATTT TACGGAAAAA GTTTGATATA TTTCTCAATT 781 TTGTCATTTG CAGCACTGTC GTTACAAAAT GGCTAATATA TATTAAAAAA TTAATTTTAA 841 ATTTATATTT ATTACTTTTG ATTGTTTTTA AAAAAATTAT TTAAAGGTAT ATATTATTCT 901 TCTATCAAAG TTCGAGGTTA TATTTAATTT TTTTTATACA TAAATTATTG TTTGACTTCT 961 TTTATTATAA TTATTTGAGT TTGTTATTCT AATTTTTTTT CTTTCATTCC TTAGTTTAAA 1021 GAGAAAAAAA ACTAAACTAT TTTTTTTGTG TGTATTGTAA TTTAATTTGG TATTCAAAGA 1081 AAAATTTTGG TCATCTACAA TAAGTTTTAC AAGAATATTA GTGAAATATA AATAAATTTG 1141 ATTATCAAAA TAATAATTAT AAATTAGTCA TTAACCAAAA AAAAAGAAAA Predicted gene structure (within gDNA segment 16727 to 28332): Exon 1 18372 18391 ( 20 n); cDNA 592 611 ( 20 n); score: 0.800 Intron 1 18392 19594 (1203 n); Pd: 0.659 (s: 0), Pa: 0.902 (s: 0) Exon 2 19595 19617 ( 23 n); cDNA 612 632 ( 21 n); score: 0.652 Intron 2 19618 22451 (2834 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 22452 22487 ( 36 n); cDNA 633 667 ( 35 n); score: 0.611 Intron 3 22488 22948 ( 461 n); Pd: 0.739 (s: 0), Pa: 0.970 (s: 0) Exon 4 22949 22985 ( 37 n); cDNA 668 703 ( 36 n); score: 0.514 Intron 4 22986 25127 (2142 n); Pd: 0.899 (s: 0), Pa: 0.943 (s: 0) Exon 5 25128 25138 ( 11 n); cDNA 704 714 ( 11 n); score: 0.727 Intron 5 25139 25618 ( 480 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 6 25619 25656 ( 38 n); cDNA 715 751 ( 37 n); score: 0.658 Intron 6 25657 26932 (1276 n); Pd: 0.000 (s: 0), Pa: 0.430 (s: 0.79) Exon 7 26933 26974 ( 42 n); cDNA 752 792 ( 41 n); score: 0.786 Intron 7 26975 27056 ( 82 n); Pd: 0.000 (s: 0.79), Pa: 0.000 (s: 0.54) Exon 8 27057 27463 ( 407 n); cDNA 793 1190 ( 398 n); score: 0.835 MATCH C04HBa0127E11.1+ SGN-U322569+ 0.835 614 0.516 C PGS_C04HBa0127E11.1+_SGN-U322569+ (18372 18391,19595 19617,22452 22487,22949 22985,25128 25138,25619 25656,26933 26974,27057 27463) Alignment (genomic DNA sequence = upper lines): AATGTCATTA AATTTCAATG GTAAAATAAA TTGGTTTCCT TTCGCATTAT GTTTTTATTA 18431 ||| || | |||||||||| AATTCCAGGA AATTTCAATG .......... .......... .......... .......... 611 TGATTGTGGT GTTCACGCCA GTTTTCCCAC ACCTCAACTA ATTCCACCTC TCACCATTAA 18491 .......... .......... .......... .......... .......... .......... 611 CAACTATCAG GTAACTCTGT CCACCAAAAC TAGGACAAAT AGAAAAAAAT CATCTAGCAT 18551 .......... .......... .......... .......... .......... .......... 611 TTTTGTCTCT ACTAGAAATT GAACATTAGA CCTCATGATG CTCAACCCAC CTCCCTTGAC 18611 .......... .......... .......... .......... .......... .......... 611 CACTAAGCCA CACCCTTTGA GAAGTTTTTT GTTAATTTTA ATGACCTTGG TATCCAAATA 18671 .......... .......... .......... .......... .......... .......... 611 CATTGGATAC GTCCCACCTC CCACCAAATA ACTTTGTTGT CTTCCCTGAG TTTTATAAGA 18731 .......... .......... .......... .......... .......... .......... 611 CCTCAGAATT CTCAACCACT TCATTAATCA CTAAGCCACA CCCTTGGGGT TTCACCACTA 18791 .......... .......... .......... .......... .......... .......... 611 TGTTTCAAAC ATATACAAAA TATTATTTAC TAAGAAATCA CAAACTTACA GCTCAAATTT 18851 .......... .......... .......... .......... .......... .......... 611 TATATTCCGA AATCAATATA ACAAATGAAT ATGAGCTTTC ATCTGTGCAG AATCCCTAAG 18911 .......... .......... .......... .......... .......... .......... 611 TATGTTCAGA ATAAATTAGG GCACAAAATC ACATGAAATT TTTCAAAAAT AAAAAATAAA 18971 .......... .......... .......... .......... .......... .......... 611 AAGAAAGAAG GAAGGAAATA GTTACTCTGG AGCTTTATTG GAGTCATCGT CCTCAACGAA 19031 .......... .......... .......... .......... .......... .......... 611 GGGACGTTTG GCACGTCGCG ATGAACCTTC TTCCATGGCG TAATCGGCAA TTGATATGAA 19091 .......... .......... .......... .......... .......... .......... 611 GGATTCAGAA AGGAAAAAAA ATGAAGGGGC AAAGTGAAGA GAGAGCGGTG GTACTGGTAA 19151 .......... .......... .......... .......... .......... .......... 611 ACATCAAAAA AAATAATAAT AATAAATTCT ATCTTACAAA CTATAATACC TTTTTTAAAT 19211 .......... .......... .......... .......... .......... .......... 611 TGATAAATAT CTAAAATTAA CATTACCAAT ATTAATCTTA TTGGATAAAT TCAAATAAGT 19271 .......... .......... .......... .......... .......... .......... 611 TATTGATAAT ATAGAAAAAT AATATTATAA ATTATTAGTT GAGAAATGTG ACAACACAAA 19331 .......... .......... .......... .......... .......... .......... 611 AAATATACTA ATAGCTGAGA TAATTTGTAA AATAAAATTA TCATTTTACT TTATTATGGA 19391 .......... .......... .......... .......... .......... .......... 611 TATTCATGTC TACTAGTCAT TTTTATCATT AATTAATATT TAGGATGATG ATTATTATTA 19451 .......... .......... .......... .......... .......... .......... 611 TTATTATTAT ATATATATAT ATATATATAT ATATATATAT ATAAAAGAGA TAAAAATGTA 19511 .......... .......... .......... .......... .......... .......... 611 AGATCAAATT GTTTCATAAA TATATAGAAT AAATTACAAT TTACAAATAT TAATATTTTT 19571 .......... .......... .......... .......... .......... .......... 611 TTAATTTAAT CACTCTGTCA CAGTTTTGCA TAGATAAAAA TGATCGATAA ATTATTTCGT 19631 |||| || | | | | | || | | .......... .......... ...TTTT-CA TCCA-ATATA TGGTAG.... .......... 632 TCGACATTTG CACAAGGATT TTACTTTTAT AAAAATGATA TTTCAAAAAA ATTGTATAAC 19691 .......... .......... .......... .......... .......... .......... 632 TAATTATTTT CATAAATAAA TTACTTATGT TGAATAGTTT AATTTGGTTA TTAGTTCACT 19751 .......... .......... .......... .......... .......... .......... 632 AACTCCTTGT TATAAAGATA CAATTTATTT CATTTTAATG GTATTATTGA ATAAGTAGTA 19811 .......... .......... .......... .......... .......... .......... 632 TTATAGGATT GTTTTGGTAT TTCAATTTTT ATTTTTTTTT TGTTTAACTC AATATTATAG 19871 .......... .......... .......... .......... .......... .......... 632 GATTATTTGG TATTTCAAAT ATAATTTTTT GTTTAAGTCA ATATTCAAAT TTTGTGTATA 19931 .......... .......... .......... .......... .......... .......... 632 AAAAGTACAT AAATTTGGTA TAAAATATGT ATATAACTAT ATAAAATTTG TATGAAGCTC 19991 .......... .......... .......... .......... .......... .......... 632 ATGTTAGATA CTATTGCATA CAACATTCAT ATCAAACTAA ATACAACTAC AATACCAACA 20051 .......... .......... .......... .......... .......... .......... 632 AATGATATGT TGCAGTAGAT GAGTTACTCC TGTCGGGTTT CAGATTCGAA TCATCAGTAT 20111 .......... .......... .......... .......... .......... .......... 632 GTAAAAATTC TTGATAGAGT GTGTTTTCCC TCAAATGACC CTACGTGACA TGAATTTGGG 20171 .......... .......... .......... .......... .......... .......... 632 AAAGTCAAGC TTCAGTGGAT ACTTAACACT TAGTGAGAGA CTAGAAAAAA AAATACAACT 20231 .......... .......... .......... .......... .......... .......... 632 ATTATAAATA TACCAAACTT AAAAAATAAT TTACTCATAA CTCATCCGCC ATATTATGAT 20291 .......... .......... .......... .......... .......... .......... 632 TATCATTTGA TTTTTGATAC AATTGTATGT AATTTTGAAT TTAAACGAAG TAAAATCAAA 20351 .......... .......... .......... .......... .......... .......... 632 ATTTCAATTC GAAACTAATT CGAATTTTAC CCAAATAATC TCAAATTTTA TATTATTAGT 20411 .......... .......... .......... .......... .......... .......... 632 CTCCTCGAAA TTCCATTTCT TTGGAGAAAT CACCAATTGA AACGAAAGTT TTCCTATAGA 20471 .......... .......... .......... .......... .......... .......... 632 TTCCCCAAAC AAGGAAAATT AAAAAGAAAT CCTTAATTAT AATCTGATTT CGTTCGATAA 20531 .......... .......... .......... .......... .......... .......... 632 AACTTTTAAA ATAATGTTTG TTCTAGGAAG ACTTGTTGTT GAGTTTCTTT CTGAAATAGT 20591 .......... .......... .......... .......... .......... .......... 632 CTATCTGCCT CCACGAGGTA CTCGTACGAT CTACATACGC TTTAGCTTTT AATTTTTGTC 20651 .......... .......... .......... .......... .......... .......... 632 TAAAGACACA ACTTGTGTCA CTGAATTTAT AAAGTATAAC TCGTGTCATG CAATTTTAAA 20711 .......... .......... .......... .......... .......... .......... 632 TTCTTGCCTC AACACTTACC AGAGAATATA TACTTTTCTT TACTATTAAC CTTAACTCTT 20771 .......... .......... .......... .......... .......... .......... 632 TCTGCTTTAA GACTTTTTCT AATGTTGGAT TTTCTTAAGC TTTAAATACT CATTTCCATC 20831 .......... .......... .......... .......... .......... .......... 632 ATAACAATTA TCAAACTCTC AATCTACTGC TATACTTGAG ACTTACAACT TTGAGGCTGG 20891 .......... .......... .......... .......... .......... .......... 632 TAAATGTGCT AGTCGTCTCA AGGCTTGCGT TTGCATATAT AGGAAGGAGA AGAAATTATA 20951 .......... .......... .......... .......... .......... .......... 632 GTATGTGGCA GAGGAGATTC AATCACTCAA GCAACGAATC ATGGATATCT CTCGCAAACG 21011 .......... .......... .......... .......... .......... .......... 632 AGAGACTTAT CGTATTACAA ATATCAATTC AGGAGATCAA GGGCCAAGTA ATCAGGTTAC 21071 .......... .......... .......... .......... .......... .......... 632 AATATTGAGG AGAACTACCT CATATGTGGA TGACCGCGGT TACATTTTTG TTGGATTTCA 21131 .......... .......... .......... .......... .......... .......... 632 GGAATGTTGT ACAAACATTG CTAGTTGAAA TTCTCAAACC AGAGCCTTGT CGAAGTGTCC 21191 .......... .......... .......... .......... .......... .......... 632 TCTGCATTTA TGGCATGGGC GGTGTAGGCA AGACCACTCT TGCGAGAAAC CTCTACAGAA 21251 .......... .......... .......... .......... .......... .......... 632 GTCCTAGTAT ATAGTCAATA CCTTCCCTAC ACGTGTGTCG ATATGTGTTT CTCAAGAGTG 21311 .......... .......... .......... .......... .......... .......... 632 CAACACAATG GATCTTCTTA AGACTATCAT AAAATCCATC CAAGTTTGCA CCAACGAAAC 21371 .......... .......... .......... .......... .......... .......... 632 TCTTGATTTG TTGGAAAGGA TGGCAGAAAG AGATCTAGAA ATTTACCTTC GTAAGCTATT 21431 .......... .......... .......... .......... .......... .......... 632 AACAAAACAC AAATACCTTT TGGTGGTTGA TGGTGTGTGG CTAATAGAAG CATGGAAGAG 21491 .......... .......... .......... .......... .......... .......... 632 TTTGAAAAGA GCATTTCCGG ATAACAATAA TGGCAGCAGA GTTGTTATTA CCACACGCAA 21551 .......... .......... .......... .......... .......... .......... 632 AGTGGATGTC GCTGAAAGAG CAGACGACAG AGGTTTTGTC CATGAACTTC GTTTCCTAAG 21611 .......... .......... .......... .......... .......... .......... 632 CCAAGAAGAA AGTTGGGATT CTTTTGTAGG AAACTACTTG ATGTTCGATC AATGGTTACA 21671 .......... .......... .......... .......... .......... .......... 632 GCAATGGAAA GTCTAGCTAA GGATATGGTG GAAAAGTGTA GAGGCTTACC TCTTGCAATT 21731 .......... .......... .......... .......... .......... .......... 632 GTTGTATTGA GCGGATTGTT GTTCATCTTG TATTCCAAAC ATACTTAGAA CAAAACTTTG 21791 .......... .......... .......... .......... .......... .......... 632 AACATCTTTG TAAGAAAACA AAGTTTAAGA ACATTTTCAC AACTAGAAAA TTAAAACTAG 21851 .......... .......... .......... .......... .......... .......... 632 TAGCGAAACT AGAATCAGAA ACAGATTTTA AAAAAAATAT ACGAAATATT TTTCTTAAAG 21911 .......... .......... .......... .......... .......... .......... 632 AGGAATTGTT GTTAATATGT GTCTAAAGAA TCTTACTGAT TCCAACAAAC TTTGCAGAAA 21971 .......... .......... .......... .......... .......... .......... 632 CACGAAGTTA CCAAGTTTAA TGAACCAGTG AAGAATAGAA GAATAGAAGA ACTGAAATTA 22031 .......... .......... .......... .......... .......... .......... 632 ATTCACAAAT CTAAAATTTG TAAAACACGT ACCAGAATCT GAAAAAAAAT TTAATAGGAA 22091 .......... .......... .......... .......... .......... .......... 632 AAAGATCAAG TCCACTGAAT TCACAGTGTC CCCTTAAGGA AATTATTCCC CTCTAGTATC 22151 .......... .......... .......... .......... .......... .......... 632 CGAGGTTTGA TTTGGAATAT GACCTCCTAG GGTAAAATGA TCTCAATCAC CAGAGTATAG 22211 .......... .......... .......... .......... .......... .......... 632 ATACCAAAAA CTCCGGTGTC AGCGAACCAC TCAACGGCAG TAAAGTACAC TTAGAATACT 22271 .......... .......... .......... .......... .......... .......... 632 AAATTTAGTA GTTGAAGAAG AAGTCCATTA ATTCTTTTTT TAAAATGAGA GGAAATCCCT 22331 .......... .......... .......... .......... .......... .......... 632 CAATTTATAG AAGACAAAGG GTGGTGCGAA AAGGTTCTTA TTGTGCCTTA CCGGAAAGGT 22391 .......... .......... .......... .......... .......... .......... 632 CACAAACCTT TGGAAAAGTC ACAATCTTTC AGAATGATCG TCACCTTTCA TAAAACTCAC 22451 .......... .......... .......... .......... .......... .......... 632 AACTTTCCAT AAAAGTCACA ATTTTTCATA AAAATTGCAA CTTTTCATAA AAGTCACCAC 22511 || |||| | || | | | | ||||| | | || AAATTTCTAA CAATTTTATA ACTTTTC-GA TGATTT.... .......... .......... 667 TTTTCATCAA AGTCGCAACA TTTCATAAAA GTCACAACTC TTCATAAAAG TCGCAACTCT 22571 .......... .......... .......... .......... .......... .......... 667 TCATTTTCCA TTCACGCCTT TTTTAAAATC CAACACGGAT TACTTTCGCA TAAAATGGGG 22631 .......... .......... .......... .......... .......... .......... 667 CTAGACGAAT GGCAAAAGGT GAAAGACTGC CTTTGGAAGA ACATTGAAGA TGACTCTATT 22691 .......... .......... .......... .......... .......... .......... 667 GAAATCTCCT ATATACTATC ATTGAGCTAT AATGATTTGT CAATTGTGCT CAAGCAATGT 22751 .......... .......... .......... .......... .......... .......... 667 TTTCTGTACT TTGATATTTT TCCAGAAGAT CAAGTGGTCG ATGTTGAGAA CATAATATGG 22811 .......... .......... .......... .......... .......... .......... 667 TTGTGGATGG CCGAGGGTTT CATACCAAAT GGAGAAGAAA GAATGGAGGA TGTCGCTGAA 22871 .......... .......... .......... .......... .......... .......... 667 TGCTACTTGA ATGAGCTGAT AAGACGAAGC TTGATACAAG TGGTAAATAC ATCTTGAGAA 22931 .......... .......... .......... .......... .......... .......... 667 AAAGTTACTT TATGCAGGGT TCATGATTTA CTTCGTGATC TTGCAATACA AAAGGCATCG 22991 ||| ||| || | ||| | || || | | .......... .......GGT TCA-CTGCTA GTGTTTGAAC TTTGTATTTG ATTG...... 703 GAGATAAACT TCTTTAACAT TTATGATCCA AGAAATCACT CCATATCCTC TTCATGTATT 23051 .......... .......... .......... .......... .......... .......... 703 AGACATGCCA TTCATAGTCA AGGAAAAAGG TACCTCTAAC CTGATCTTTC TAATTTAAAG 23111 .......... .......... .......... .......... .......... .......... 703 TTGAGGTCAA TTATGTTCTT CGATCCAGAT TTTCATAATC TGTTTGAACT TACAGATGTG 23171 .......... .......... .......... .......... .......... .......... 703 TTCCGACGTT TATATGTGTT GTAAATTGGC AACCTCAAGA ATCTACAGAC ACTTTGTGTT 23231 .......... .......... .......... .......... .......... .......... 703 GTAAATGAAA CTGGACGCTT ATACCAACTA CCCCACGAGA CAGCTGACCT AATAAATCTA 23291 .......... .......... .......... .......... .......... .......... 703 AGACATTTAG TTGCTCGGTA TTGAGAACCT CTGGTACGTA TAAACAAACT CACTAGTCTT 23351 .......... .......... .......... .......... .......... .......... 703 CATGTTCTTA AAGACATCTC TTGTGATCAG TGGGAAGATA TTGACCCTGC TTATTTAATC 23411 .......... .......... .......... .......... .......... .......... 703 AATCTTCGAG AATTAACCAT GCGTAATATT TGGAATTATT ACTCCCTAAA CAACATTAGC 23471 .......... .......... .......... .......... .......... .......... 703 AGCTTGACAA ACCTAAGCAC TCTCACATTG TTTTCTGAAG AAGTAATATC ATTCCCATCC 23531 .......... .......... .......... .......... .......... .......... 703 CTTCAATTTG TTAATCGTTG TGAAAAGCTC CAGAAATTGT ATTTAAATGG GAGAATAGAG 23591 .......... .......... .......... .......... .......... .......... 703 AAATTGTCTC CGTTTCCAAA TTCCATCACA ATGATTGTTC TGAGGGACTC AGTACTGACA 23651 .......... .......... .......... .......... .......... .......... 703 GAAGATCCGA TGCCTATTTT GGGAATGTTG CCAAACCTAA GGAATCTCGA ATTGTGTAGA 23711 .......... .......... .......... .......... .......... .......... 703 GCTTATGAAG GAGAAGAAAT AACGAGCAAT GATAACAGCT TCAGTCAACT AAAGTTCATT 23771 .......... .......... .......... .......... .......... .......... 703 TATCTTGGTT TTCTTTCAAA GCTAGAAAGA TGGAATTTAA GCACAAACGC GATGCCTCTC 23831 .......... .......... .......... .......... .......... .......... 703 ATTAAAGCTC TTCATATCGA TCATTGTCCG AAGCTCATGG AGATTCCAGA GAGAATGAAA 23891 .......... .......... .......... .......... .......... .......... 703 GGCGTGAAGC GTATTTGATT ATAGCAAAGG TAAATATACA AACAAATCCT AATCTTACAT 23951 .......... .......... .......... .......... .......... .......... 703 AATTTTGTAG AAAAATCACC TATAGGAGTT TTTTTTCCAA ACATATATGA AATCTCGTGT 24011 .......... .......... .......... .......... .......... .......... 703 ATGAAAACAG CGTAAAATTC ATATGAAATA TATCTATCTC ACTTAGAGCT TAGAATTTCG 24071 .......... .......... .......... .......... .......... .......... 703 TTCATAATTT TTGTGTATGA ACAATATATA AACTTTGTAT AAAGTTCATT ACTGAAAATC 24131 .......... .......... .......... .......... .......... .......... 703 TCATACAACT ACAACAACAT TGTATACAAT ATTCATATCA AACTAAATAC AACTACAATA 24191 .......... .......... .......... .......... .......... .......... 703 CCAGCAAAAG ATATGTTGCA GACTGCAGTG GATGAAGTTG CTCCTTCCAG GTCTCGGGTT 24251 .......... .......... .......... .......... .......... .......... 703 TAAATCCTCG GTATGGAAAA ATTATTGGTA TGGAGCACTC TCCTCAAATG GCCCCTACGT 24311 .......... .......... .......... .......... .......... .......... 703 GGCGTGAATT CGGGATAGTC AGGCTCCCAC GGATACCAGA CACCAAATGG GAGATCAGAA 24371 .......... .......... .......... .......... .......... .......... 703 AAAAATACAA CTATGATAAC ATAGTAAACT TAAAAACAAT TTACATATAA CTCATCCGGC 24431 .......... .......... .......... .......... .......... .......... 703 ATTATATGAT TTTTGATACA ATTCGTCTGT AGTTTTGAAT TTGAATGAAC TAAAATTACA 24491 .......... .......... .......... .......... .......... .......... 703 ATAATCTCAA ATTTTATGTG TTTCTCAAGA GTACAACACA ATGAATCTTC TTAAAACTAT 24551 .......... .......... .......... .......... .......... .......... 703 CATAAAATCC ATCCAAGGTT ACAACACAAA AACTCTAGAT TTGTCGGAAA AGATGGCAGA 24611 .......... .......... .......... .......... .......... .......... 703 AAGAGATCTA GAAAATCACC TTCGTAAGCT AATAACAAAA CACAAATACC TTGTGGTGAT 24671 .......... .......... .......... .......... .......... .......... 703 TGATGATATG TGGCAGCGAG AAGCGTGGAA GAGTTTGAAA AGAGCATTCT CGGATAGCAA 24731 .......... .......... .......... .......... .......... .......... 703 TAATGCCAGC AGAGTTATTA TTACCACTCG CAAAGTGGGT GTCGCTGAAA GAGCAGACAA 24791 .......... .......... .......... .......... .......... .......... 703 CAGAGGTTTT GTCCATGAAC TTTGTTTCCT AAGACAAGAA GAAAGTTGGG AACTCTTTTG 24851 .......... .......... .......... .......... .......... .......... 703 TAGGAAACTA GTTGATGTTC GAGCAATGAT TCCAGCGATG GTAAGTCTAG TTAAGGATAT 24911 .......... .......... .......... .......... .......... .......... 703 GATGGAAACT ATAGAGGCCT ACCTCTTGCA ATTGTTGTAT TGAGTGGACT ACTTTAGCAT 24971 .......... .......... .......... .......... .......... .......... 703 GAAAGGGGAC AAGACGAATG GCAAAAAGTT AAAGACTGCC TTTGGAAGGA CATTGAAGAA 25031 .......... .......... .......... .......... .......... .......... 703 GACTCTATTG AAATCTCCTA CATACTATCA TTAAGCTTCA ACGATTTTTG TCAGCTACGC 25091 .......... .......... .......... .......... .......... .......... 703 TCAAGCGGTA TTTTCTGTAC TTTGGTATTT TTCCAGAAGA TCAAGTGGTC GAGGCCAATA 25151 |||| | ||| .......... .......... .......... ......AAGA TTTTGTG... .......... 714 ACATAATACG GATGTGGATG GCAGAGGGTT TCACCATACC AAGAGGAGAA GAAAGAATGG 25211 .......... .......... .......... .......... .......... .......... 714 AAAATGTCGC TGAAGGCTTG TTGAATGAGC TGATAAGACG AAGCTTGGTT CAAGTGGCTA 25271 .......... .......... .......... .......... .......... .......... 714 AAACATTTTG GAAAAAAGTT ACTGAAAATG TAGGGTTCAT GATTTACTCC GTGATCTTGC 25331 .......... .......... .......... .......... .......... .......... 714 GATATAAAAG GCATCCGACA TAAACCTCTT TGACATTTAT CATCCAACCA TTCTTAGTCA 25391 .......... .......... .......... .......... .......... .......... 714 AGGAGAAAGG TACCACTCAC TTGATCTTTC TAATTTGAAG TTGAGGTCAA TTATGTTCTT 25451 .......... .......... .......... .......... .......... .......... 714 CGATCCAAAT ATTTGTAATG TGTTCCAACA TATAGATGTG TTTTGATATC TATATGTGTT 25511 .......... .......... .......... .......... .......... .......... 714 GTACTTGGAA ATTAAGAAGG TGTTATACCT TTGTGTTAAT ATTTCTAGAG AAGAAGTTGT 25571 .......... .......... .......... .......... .......... .......... 714 ACATGAAGAC ATTCAAGTTC ATCAACTTGG CTTCTGCAAC ACTTGGATTG TTTCAACTTT 25631 ||| ||| | | .......... .......... .......... .......... .......TTG TTT-ACAAAT 726 CTCCTGTTTT TTTTTTTTTT TTTTTGCTTG TTTTTAGTGT GGGGAATTGG TTCAAACAAT 25691 |||| |||| ||| | | |||| ATCCTCTTTT AAGTTTATCT ATTTT..... .......... .......... .......... 751 TATTTTTTTT GGGATTCTAT TCTAAAATGA TTTTGTGATG ATTTAATTAA GGAAAAAAAG 25751 .......... .......... .......... .......... .......... .......... 751 GCTCAAATAT GTCGTCAAAC TATTATAAAC GACTCATTCA TGTCATTCGC CATTACAAAA 25811 .......... .......... .......... .......... .......... .......... 751 CAGGTTTCAT CTTATGCAAC TCTTGCAAAA ACAGCTGAAT CTAAGAAGTC GTTAAACTTG 25871 .......... .......... .......... .......... .......... .......... 751 AACATTAACA AAACTCATTT TCGCCATCGG TCGTTGAAAG TTTGATTCAT CTATGTCATT 25931 .......... .......... .......... .......... .......... .......... 751 TTACCTAACA GGATTCTGAT GTCATCTTCT TGAACTTTTG ATAAAAAATG ATCGTTCAAG 25991 .......... .......... .......... .......... .......... .......... 751 TTTCATAAGC TCCAAAAATA CTAAAGCTCA CACAACAATC AACGAACGAC CAGGTGATCG 26051 .......... .......... .......... .......... .......... .......... 751 ATCTGTCAGT CTCAGCAAGT CATAAATGAC TTGGGATCGC TATAGGAATG CTCTAAACGA 26111 .......... .......... .......... .......... .......... .......... 751 TGCACAGAAG ATAAAATACT AAAAATGACA AGAAGGGTCA TTACAAAATC ACATGAATAA 26171 .......... .......... .......... .......... .......... .......... 751 GTCGTTTCTC AAACGAAATT GATATAGAAG AAACAAACTT TTAAATTTTG GTGACACTAA 26231 .......... .......... .......... .......... .......... .......... 751 ATTATGGATC AGTAAATTTT ATTAAAGGGA ATAAAATTGT CACTAAAGCT TTGAAGGGTA 26291 .......... .......... .......... .......... .......... .......... 751 TTTTCTTTCA TATAAATTTT ATGCAACTAC AACAACATAC AACACAATTT TTATATAACT 26351 .......... .......... .......... .......... .......... .......... 751 CATCAATCAT TATACAATTA TCAAATTACT TTAATATAAT TTTGAATTCC AACGAAATAA 26411 .......... .......... .......... .......... .......... .......... 751 AACTAAAATT CAATACAAAA GTTGCTCAAT TTTTACTAAA TAAATTTCAT TTTGAGAAAT 26471 .......... .......... .......... .......... .......... .......... 751 CACTAAAAAT TAATTTTGAG AACTTGAACT TCAAGTTCTA ACAAAATCTT TTATGGAATA 26531 .......... .......... .......... .......... .......... .......... 751 ACCTCCATGG ATGAATTCGA ATTAATTTGT GCTGACTTAT CGAATATTTT ATATCTTTCT 26591 .......... .......... .......... .......... .......... .......... 751 CTTCAAAGTT ACAAAATGCA TCTTCAAATT GAAAAGTCAT GCTCCTATTT TTCCCTATAG 26651 .......... .......... .......... .......... .......... .......... 751 ATTCCCCAAA CAAGGAAAAT TATCATTTAA AGATTAAATT TGGAATTTCT TATTTGACTA 26711 .......... .......... .......... .......... .......... .......... 751 TTAATAATAT AATTTTTTAA CCACTATGAA ATTTTTAAAA TCATAAATTT TAAAAATCTT 26771 .......... .......... .......... .......... .......... .......... 751 TCGTTCCTAG TTAAAATGTC GTAACTAGTC TTTCCATAAA ACAGATGTAC AATTAATTAA 26831 .......... .......... .......... .......... .......... .......... 751 TTAGCTAATT AAGTGATTTA GGTGGAGGAA CAATTAAACA AACTCTTCTA ATCTGAATAT 26891 .......... .......... .......... .......... .......... .......... 751 TTAAATGCCT TTAGTCTAAT ATGAGATATC TTTTTAAATA GAGGGAAAAG GGTCTGATAT 26951 | |||||| || |||||| .......... .......... .......... .......... .ACGGAAAA- AGTTTGATAT 769 ACCCCTCAAC TTTGTCATTT GGAGTTGATA TACCCCTCGT TATAAAAGTG GCTCATATAT 27011 | ||||| |||||||||| | | ATTTCTCAAT TTTGTCATTT GCA....... .......... .......... .......... 792 GCCCTTACCG TTATATAAAC GGCTCACATA TACCCCTACC GTTACAAAAT GGC-TCACAT 27070 | | | | | ||| .......... .......... .......... .......... .....GCACT GTCGTTACA- 806 ATATCCTTCA TTTCACGAAA GCTAAAAAAT TAGTTTTAAA TTTATATTTA TTACTTCTAA 27130 | || | | | | | | |||||||| || ||||||| |||||||||| |||||| | | AAATGGCT-A -AT-A-TATA -TTAAAAAAT TAATTTTAAA TTTATATTTA TTACTTTTGA 861 AAAAAATT-T AAAAATTATT TAGGGGTATA TATGATTCTT CTATCAAAGT TCAAGG-TAT 27188 || |||||||||| || |||||| ||| |||||| |||||||||| || ||| ||| TTGTTTTTAA AAAAATTATT TAAAGGTATA TATTATTCTT CTATCAAAGT TCGAGGTTAT 921 ATTTTAATTT TTTTTCATAT ATTAATTATT TTTTGACTTC TTTTATTATA ATTATTTGAA 27248 | |||||||| ||||| ||| || ||||||| ||||||||| |||||||||| ||||||||| A-TTTAATTT TTTTT-ATAC ATAAATTATT GTTTGACTTC TTTTATTATA ATTATTTGAG 979 TTTCTTATTC TTATTTTGTT TTTTCTTTCA TTCCTTAGTT TAAAGA-ATA AAAAATTAAA 27307 ||| |||||| || || || |||||||||| |||||||||| |||||| | | ||||| |||| TTTGTTATTC -TA-ATT-TT TTTTCTTTCA TTCCTTAGTT TAAAGAGAAA AAAAACTAAA 1036 CTATTTTTTT TGTGTGTATT GTAATTTAAT TTCGTATTTG AAGAAAAAAT TTGGTCATCT 27367 |||||||||| |||||||||| |||||||||| || ||||| |||||||| | |||||||||| CTATTTTTTT TGTGTGTATT GTAATTTAAT TTGGTATTCA AAGAAAAATT TTGGTCATCT 1096 ACAATAAGTT TTACAAGAAT ATTAGTGAAA CATAAATAAA TTTGATTATC AAAATAATAA 27427 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ACAATAAGTT TTACAAGAAT ATTAGTGAAA TATAAATAAA TTTGATTATC AAAATAATAA 1156 TTATAAACTA GTCATTGAAA CAAAAAAAAA AGTCAA 27463 ||||||| || |||||| || | |||||||| || || TTATAAATTA GTCATT--AA CCAAAAAAAA AGAAAA 1190 hqPGS_C04HBa0127E11.1+_SGN-U322569+ (26933 26974,27057 27463) ******************************************************************************** EST sequence 16 -strand 888 n (File: SGN-U328344-) 1 CCTACATGTC ATTTTTTGGT TTACATGTAT TATGTCATGT AGGACTCATA TGTTTATTTA 61 TTTAAAAGTT ATATAGTAAA AGTGTCTATT TATGCATTAT AAAAGTTGAA AGGCAAAGTT 121 AAAATTTGAA GTCAAGTTTA GAATTTAATA TATGTATTAT GCCTTTATTG AAACAACCTT 181 ACATTTATAT GTATTAAACA TTTATTTCAT ATGTAAATGA AATTTATAAT CATATCATTA 241 CTTTTTAAAA TTTACTATTA TCATCAATCA AATTTATTAT TGCTTTAAAA TAGGAACTGA 301 TATGGTAAAT ATATATAAGA ACGGAGGAAG TAATACTTTT TTGGGATTTT CATAATTAAA 361 AAGAATTTCT CCTTCGACTT CATATGAAAA AGTTTAAAGC AATTTAATGA GAAAATGACA 421 ACATTGGTGA TGAATGTTTG ATAATCACTA CTTTCAATAT GTTTGATTTA ACATGAAATT 481 AATGCACTGA AAATGTGTAA TTATACACAA GTGAAACAAG GCATAAATCA CTATGATATT 541 AACACACAAG CGAAAATTGT CATATCTTGT GCAATATTAC ATAGTTATTT GCAAGAATAC 601 CAAAGGAATA ATGAAATATT TATAGTCTAT ATGCATGAAA ATATAGCTGT AGATGATATT 661 GACCAACAAA TGGTTCAAAG TAACAAAATT GGTTCGTCTT CTCGACCAAA TTATCGAGCA 721 ATGCAGGTTT AACGTGAGGA GCTTGATCGT ACTATGTGAG AGAATGATAT TAAAGACACT 781 ACAATTTATG TTCAATTTTT TTTATTGAAT TAAAGTTTGA TCAATCAAAG TTAAATAAAA 841 CAATAACTTA AATAGACAAC AAATAACTTT GTAATATTTT TTATTTAT Predicted gene structure (within gDNA segment 33373 to 24454): Exon 1 32450 32314 ( 137 n); cDNA 26 162 ( 137 n); score: 0.876 Intron 1 32313 28749 (3565 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.58) Exon 2 28748 28691 ( 58 n); cDNA 163 219 ( 57 n); score: 0.595 Intron 2 28690 28363 ( 328 n); Pd: 0.211 (s: 0.56), Pa: 0.000 (s: 0) Exon 3 28362 28337 ( 26 n); cDNA 220 244 ( 25 n); score: 0.654 Intron 3 28336 27435 ( 902 n); Pd: 0.581 (s: 0), Pa: 0.000 (s: 0.71) Exon 4 27434 27395 ( 40 n); cDNA 245 285 ( 41 n); score: 0.712 MATCH C04HBa0127E11.1- SGN-U328344- 0.792 261 0.294 C PGS_C04HBa0127E11.1-_SGN-U328344- (32450 32314,28748 28691,28362 28337,27434 27395) Alignment (genomic DNA sequence = upper lines): TGTATTGTGT CATGTAGGAC TCATGTGTTT ATTTATTTAA AAGTTGGATA GTTAAAGTGT 32391 |||||| ||| |||||||||| |||| ||||| |||||||||| ||||| ||| || ||||||| TGTATTATGT CATGTAGGAC TCATATGTTT ATTTATTTAA AAGTTATATA GTAAAAGTGT 85 CTGTTTGTGC ATTATGAAAG TTGGAGGTCA AAGTTAAAAT TTGAAGGCAA ATTTAGGGTC 32331 || ||| ||| ||||| |||| ||| | | || |||||||||| |||||| ||| ||||| | CTATTTATGC ATTATAAAAG TTGAAAGGCA AAGTTAAAAT TTGAAGTCAA GTTTAGAATT 145 CAATATATGT ATTATGCTGG AAATTGGTCC GACAGAGGCA GCTTCTCAAT TCTCCCTTGT 32271 ||||||||| ||||||| TAATATATGT ATTATGC... .......... .......... .......... .......... 162 AACCATAATT TGTGGAGATT ATGACAAGAA TTAACAAATT CTAGGGCTGT GAATGATTCA 32211 .......... .......... .......... .......... .......... .......... 162 TCATCTTTAC ACAACAATCT GAGAGTGCTA AGGTTTTTCG AGCTGCTAAT GTTGTTTAGG 32151 .......... .......... .......... .......... .......... .......... 162 GAGTAGGATT TTCTTAATAT TATGCATTCT TAATTATCGA AGATTGACTA AGTCAATAGG 32091 .......... .......... .......... .......... .......... .......... 162 GAGTGATCAC ATTGGTTCCT TTTAAGAACT TGACGACTAG TTAAGAATTT AATAAAGTAG 32031 .......... .......... .......... .......... .......... .......... 162 AGAAAATTAT AGGCTTATGT CATCTGCGAA AATACTGCAA AAAAGAAGTG TTGAAATTAA 31971 .......... .......... .......... .......... .......... .......... 162 CTGAGACCCT CAACATCTTC TTCCATACAC AGCCCAATAA CCAAAGTTAT TCTATGCTTT 31911 .......... .......... .......... .......... .......... .......... 162 CTTCATATTC TATTGAATAT ATTTACCATA CAATTGCATT TTTTTCACCC TCTACCCTGC 31851 .......... .......... .......... .......... .......... .......... 162 ATCGAAAGTT CTCCTATGGC TCTTTACATG TTAGGACTAG GAATCTTGAT CTGGTTTTTG 31791 .......... .......... .......... .......... .......... .......... 162 AAATCAAATT GAACGATACG AGAAGGTACC TTTGTTTTGT AGTTTGCACA TATCGAGAAT 31731 .......... .......... .......... .......... .......... .......... 162 GTTACTACTT AATGCCTAGA AATATTGGGA TAGACCAAGT TGCCTGTGGC ATCGATCAGG 31671 .......... .......... .......... .......... .......... .......... 162 CGGAATGATT AATCAAAACA TCAGAAAATC ATTATTTTTA CTTAAAATCC CAAAAACAAT 31611 .......... .......... .......... .......... .......... .......... 162 TCTCTTTTAA ACCAATTCTG CACACTCAAA ACGCTCAAAA AAAATATACA ATTTAAACAC 31551 .......... .......... .......... .......... .......... .......... 162 TAAAAATACA CTCCTGAAAC CTGATTAATG CTCCCTTCAA CTGCTTCTTT CTCCCACCTG 31491 .......... .......... .......... .......... .......... .......... 162 CTCATGACAG TGTCAAGTGT CAACCAAAAG ATATATATTT CTCTTTGAAC TTAATGTATG 31431 .......... .......... .......... .......... .......... .......... 162 TTTGATACGA TAAAAGTCAT TTTCGAGGAA ATATTTGTAT TATGCTCACC AAAAATAGTT 31371 .......... .......... .......... .......... .......... .......... 162 TCATAACAAA AGAGTGAGTC ATTTTACATA GAAGTGGTCA TTGTGGATTG AGATATATTA 31311 .......... .......... .......... .......... .......... .......... 162 CCTCTACGGT TACGAAACAG GCCAAAAATG AGTTATCCCC ACATCTTGCA TTCTCTTGGG 31251 .......... .......... .......... .......... .......... .......... 162 AATATGATAT AGATGTGGAC AGTATTTGAT GTCAAGACCT TTAATATGAG GCATGGCACT 31191 .......... .......... .......... .......... .......... .......... 162 TGTGGCTAAA TGCCATGTTT CTAGCATCTC AAGACGATGA AGACGGAGGA ACTCAAGTTG 31131 .......... .......... .......... .......... .......... .......... 162 ACTGAAGCTG TTATCACTGC ACGTTATTTC TTTTCCTTCA TAAGCTTCTT CTAATTCGAG 31071 .......... .......... .......... .......... .......... .......... 162 ATTCCTTAGG TTTGGCAACA TTCCCAAAAT AGGCATCGGA TCTACCCTGA GTTTTGACTT 31011 .......... .......... .......... .......... .......... .......... 162 CCAAAGAACC ATCATTGTGA TGGAATTTGG AAACAGAGGA AGTTTCTTTA TTGTCCCTCT 30951 .......... .......... .......... .......... .......... .......... 162 TAACCTCAAT TTCTGGAGCT TTTGACAAGA ATTGACAAAT TCAAGAGATG GGAATGATTC 30891 .......... .......... .......... .......... .......... .......... 162 ATCAGCATAA CACAATAATC TGAGAGTGCT AAGGTTTTTC AAGCTGCTAA TGTTGTATAG 30831 .......... .......... .......... .......... .......... .......... 162 GGAGTAAGAT TCGGTAATAT CATGCATGCT TAGTTCACGA AGATTGACTA AATCAACAGG 30771 .......... .......... .......... .......... .......... .......... 162 GTCAACATCT TTCCACTGAT CACAACGAAT GCCTTTAAGA ACTTGAAGAC TCGTGAGTTT 30711 .......... .......... .......... .......... .......... .......... 162 GTTTATACAT TTCAGAGGCT CTGAATATGG AGCAACTAAA TGTCTTAGAT TTATTAGGTC 30651 .......... .......... .......... .......... .......... .......... 162 AACTGTCTTT TGGGATAGAC GGCTAAACCC TCCATGGTCA TCGACAAGAA GTGTCTGTAA 30591 .......... .......... .......... .......... .......... .......... 162 ATTCTTGAGG TTGCTAATGG AAGAGGGAAT ATTACAGACA CCTCTCAAGC TTAACAACTT 30531 .......... .......... .......... .......... .......... .......... 162 GAGGTAGTAC AAACTTCCTA TGACATCAGA CATAACATAA CCTCCAATAT CCAAGTACAA 30471 .......... .......... .......... .......... .......... .......... 162 CACGTATATA TGTCGGAACA CACTACTGAA GTTTGTAAGA TGGATGTTAC GAAAATCTGG 30411 .......... .......... .......... .......... .......... .......... 162 ATCGAAGAAC ATAATTGACC TCAACTTCAA GTGAGAAAGA TCAAGTGAGA GGTACCTTTC 30351 .......... .......... .......... .......... .......... .......... 162 TCCTTGACCA TGAATGACAT GTCTGATGCA TAAGGAGGAT ATGGAGTGCT TTTTTGGATC 30291 .......... .......... .......... .......... .......... .......... 162 ATAAATGTCA AAGAATTTTA TATCGAATGC CTTTTGTACG GCAAGATCAC GAAGTAAATC 30231 .......... .......... .......... .......... .......... .......... 162 ATGAACCTTA CACACAGTAA CCTTTTCCCA AAAGGAACGT ACCTCTTGTA TCAAACTTCG 30171 .......... .......... .......... .......... .......... .......... 162 TCTTATCAGC TCATTCAAGA ATCCTTCAGC GACATCCTCC ATTCTTTCTT CTCCATTTGG 30111 .......... .......... .......... .......... .......... .......... 162 TATGAGACCC TCGGCCATCC ACAACAGTAT TATCTTTTCA GCGTCGACCT CTTGATCTTC 30051 .......... .......... .......... .......... .......... .......... 162 TGGGAAAACA CCAAAGTACA GAAAACACTG CTTGAGTGTA GTTGACAAAT CGTTGTAGCT 29991 .......... .......... .......... .......... .......... .......... 162 CAATGATAGT ATGTAGGAGA TTTGAATGGA GTCATCTTGA ATGTTCTGCC AAAAGTGATC 29931 .......... .......... .......... .......... .......... .......... 162 TTTCACTTTT TGCCATTGGT CTAGCCCCCT TTTATGTGAA AGTAGTCCGC TCAATACAAC 29871 .......... .......... .......... .......... .......... .......... 162 AATTGCAAGA GGTAAGCCTC TACACTTTTC CACCATATCT TTAGCTATCC TTACCATTTC 29811 .......... .......... .......... .......... .......... .......... 162 TGGAACCATT GCCCGAACAT CAAGTTGTTT CCTACAAAAG AGGTCCCAAC TTTCTTTTTG 29751 .......... .......... .......... .......... .......... .......... 162 GCTTAGGAAA CGAAGGTTAT GGACAAAACC TCTGTTGTCA GCTCTTTCCG CAACATCATG 29691 .......... .......... .......... .......... .......... .......... 162 TTTCCGCGTG GTAATAATAA CTCTGCTGCC CTTCTTGCTA TCTGGGAATG CTCTTTTCAA 29631 .......... .......... .......... .......... .......... .......... 162 ACTCTCCCAT GCTTCTCTCT GCCATACATC ATCAACCACT ACAAGGTATT TGCCTTCTTT 29571 .......... .......... .......... .......... .......... .......... 162 CAATAGATCA CGAAGGTAAA TTTCTAGATC GCTTTCTGTC ATCCTTTCCA AGAAATCTAG 29511 .......... .......... .......... .......... .......... .......... 162 AGTTCCCTTA GTGCGACCTT GGATGGATTT TATGATATTC TTAAGAAGAT CCATTGTGTT 29451 .......... .......... .......... .......... .......... .......... 162 GTACTCTTGA GAAACACATA TCCAAGCGCG TGTAGGGAAG CTTGACACTA TATTAGGATT 29391 .......... .......... .......... .......... .......... .......... 162 GTTGTAGAGG TTTCTTGCAA GAGTGGTCTT CCCTAATCCG CCCATGCCAT GAATGGAGAT 29331 .......... .......... .......... .......... .......... .......... 162 GACACTTCTA CGTGGCTCCG CTTTGAGAAG TTGAGCTAGC AATTTTTCTA CGACATCCTG 29271 .......... .......... .......... .......... .......... .......... 162 AAGTCCAACA AAAATGTTAT CCTGCTCATC CACATATGAG GTAGTTCTCC TCATTGTTCT 29211 .......... .......... .......... .......... .......... .......... 162 AACCTGATTA CTTGTCCCTT CTCCTGAATT GATATTTGTA ATACCATAAG TCTCTCGTTT 29151 .......... .......... .......... .......... .......... .......... 162 GCGAGAGATA TCCATGATTC GTTGCTTGAG TGATTGGATC TCCTCAGCTA CATTGTATAA 29091 .......... .......... .......... .......... .......... .......... 162 TTTCTTCTCC TTCCTACATA TGCAAGCGCA AGCCTTGAGA CGACTAACAA ATCTATCATC 29031 .......... .......... .......... .......... .......... .......... 162 ATCACCTTTA CCAGCCTCGA AGCTGAAACT CTCGAGTATA GCAACAGCGT CATTAGCAAT 28971 .......... .......... .......... .......... .......... .......... 162 AGCGTTGATC TCAAACACCC ACTGTTGAAC TCTTTGATCA CCACTTTGCT TTTGTTCTGC 28911 .......... .......... .......... .......... .......... .......... 162 CTCTCTGAGG AAAGACTGCA TGAAGAGTAG CTCATTTCTC AGCGAGTCAA CTTCCTTTCT 28851 .......... .......... .......... .......... .......... .......... 162 CAGATTTTTA CGCAGCGAAA CTTGTTGTAC GAGGAAATCA CCCAATTTTT GAACTGCAAA 28791 .......... .......... .......... .......... .......... .......... 162 TGACACAAAT GCATCAGTCA TCTTTAGGAA TACTACTATT ACTTTTGATT GAAAAAAGGG 28731 ||| ||| |||| || .......... .......... .......... .......... ..CTTT-ATT GAAACAA-CC 178 GTAGCTGTAT GGAAATTTAA CACTT-TTTT GTTTGCAAAA GGTAAAGTCT CTATGTGAAA 28672 || | ||| ||| || || || ||| | || ||| | TTACATTTAT ATGTATTAAA CATTTATTTC ATATGTAAAT G......... .......... 219 AATTAATATT GGAAGCAGTA GTTTGAGTGT TTGATAATTG TTATGATGGA ACTGAGTATT 28612 .......... .......... .......... .......... .......... .......... 219 TAAAGCATAA AAAATCCAAC AGAGTAAAAA GTAATAAAAG TAGAAAGTTG ATAGAGTTGA 28552 .......... .......... .......... .......... .......... .......... 219 GGTAAATGAT AAAGAGAAGT ATATATTCTC TACTAAGTGC AAGGCAAGAA TTTAAAATTG 28492 .......... .......... .......... .......... .......... .......... 219 CATGACACAA GTTATGCTCT AAAGGCACAA GATATTATGT CGATCGATTT TATCACTATC 28432 .......... .......... .......... .......... .......... .......... 219 TCGTAAAGAT AGACTGGTTG TTTCAGAAAG ACTCTTGGCA ATAAGTCCGA CAAGGCAAAC 28372 .......... .......... .......... .......... .......... .......... 219 GTTATCTATA AAGTTATGTC CATCAAAATT AGATTGTAAC TAAGGATATT TTAATCAACA 28312 | || |||| ||| | ||| | || .........A AATTTATAAT CAT-ATCATT ACTTT..... .......... .......... 244 TATTTTTGTG TCATAATATA TAAACATGAC TCTTAACTTA ACGTCAATTA ACAACATTGA 28252 .......... .......... .......... .......... .......... .......... 244 CTGTGCACAA GTAAGCACTT AAACTTCTAT AAAATTGAAC AAGCAGACAC ACATGTCTTA 28192 .......... .......... .......... .......... .......... .......... 244 CATGACATAA TACACGTAGA ACGCTATGTA GGACACAAAA GTTCCATGTA GGGTGCCATG 28132 .......... .......... .......... .......... .......... .......... 244 TAGGACGAAT GTGTCTACTT GTTCAACTTT ATATAAGTTT AAATATCTAT TTGTGCACAC 28072 .......... .......... .......... .......... .......... .......... 244 CTAAAGTTAA ATGTCATAAT TGTCAACTGA CGTCGAGTTA AGAGTCATAT TTATATATTA 28012 .......... .......... .......... .......... .......... .......... 244 TGTCATACTT GCAGTTATGC CCTGCAACTT TGAGTGCGCA CAAGTAGACA CTTGATTTAT 27952 .......... .......... .......... .......... .......... .......... 244 AAATTTGATG AAATAGACAC GCACGTCATA TGTGGTATCC TACATGACAA TTTATGTCCT 27892 .......... .......... .......... .......... .......... .......... 244 GTGTGTATTA TGGCGCGTAG GACTCACGTG TCTACATGTT CAGTTTTATA CAAGTTTAAG 27832 .......... .......... .......... .......... .......... .......... 244 TATCTACCTG TGCAGACCTA AAATTGAAGG GCATAAATGT GAAATGAGAT CAAGTTAAAA 27772 .......... .......... .......... .......... .......... .......... 244 CACATTTATA TGAAGCTTAA AACTCACCCC AAAATTAGGG TATTTGTGCT AATGATTTTG 27712 .......... .......... .......... .......... .......... .......... 244 GCCTTATACA TTTCCAAAAA CTATTATTTA TTTAAGGGAA AAGGGTCTGA TATACCCCTC 27652 .......... .......... .......... .......... .......... .......... 244 AACTTTGTCA TTTAGAGCTG ATATACCCCT TATTATGAAA GTGACTCATA TATACCCCTA 27592 .......... .......... .......... .......... .......... .......... 244 CTTGTAAACA AATGACTCAG ATATACTCTT TTCCTCTAAC GGAAATGAAA AAAAAATAAT 27532 .......... .......... .......... .......... .......... .......... 244 TTTAATCTAA ATTTTTATTA TTTTTTTTCT AAAAAATATA ATCCCAATCC TCGTCAAACA 27472 .......... .......... .......... .......... .......... .......... 244 TATTTTCTTT GACTTTTTTT TTTGTTTCAA TGACTAGTTT ATAATTATTA TTTTGAT-AA 27413 || | | ||| || || | || || .......... .......... .......... .......TTA AAATTTACTA TTATCATCAA 267 TCAAATTTAT TTATGTTT 27395 |||||||||| | || || TCAAATTTAT TATTGCTT 285 hqPGS_C04HBa0127E11.1-_SGN-U328344- (32450 32314,28748 28691,28362 28337,27434 27395) ******************************************************************************** EST sequence 25 -strand 826 n (File: SGN-U344226-) 1 CTAAAAATTA AAATTTAGGG TTTTCGACCC TCCTTTAAAC GTTATGTATA TATTGTGTCT 61 CAATACATTC CCTTGTTAAA ACAAGACAAA CCTACCCAAA TGATCCCTCC ATATTTTGAT 121 ACAATGCTTC TCGAAACGTT GTTTATGTTC CGAAACATTC ACATTTCGAT CCATTATTTT 181 GTTTAATACA AGGTACACCA CCAATGATAT ATCTCGTACC GATACATGAA TGATATGTCC 241 AAAAATAGTA AAGAGAAGAA CATAGGATTT TTTTTCAAAT GGTATGAAAT TTTAAAAAAT 301 AGGGAAAAGG GTCTGATATA CCTCTCAACT TTGTCATTTA GAGCTGATAT ATCCCTCGTA 361 ATAAAAGTGG TTCATATATG CCCTTATCGT TATACAAACG GCTCACATAT ACCCCTGCCG 421 TTAGAAAATG GCTCACATAT ACCCTTCATT TAACGAAAGT TAAAAAATTA GTTTTAAATT 481 TATATTTGTT ACTTCTAATT TTTTTTTAAA AAAAATATTT AGGGATATAT ATGATTCTTC 541 TATCAAAGTT CAAGGTATAT TTTAATTTTT TCATACAAAA ATTATTTTTT GACTTCTTTT 601 ATTATAATAA TTTGAGTTTC TTATTCTTAT TTTGTTTTTT TCTTTCATTC CTTAGTTTAA 661 ATAAAAAAAA TTCAAATATT TTTTTTGTGT GTATTGTAAT TTAATTTCGT ATTCGAAGAA 721 AAAATTGGTC ATCTACAATA AGCTCGTGCC GAATTCCTGC AGCCCGGGGG ATCCACTAGT 781 TCTAGAGCGG CCGCCACCGC GGTGGAGCTC CAGCTTTTGT TTCAAT Predicted gene structure (within gDNA segment 23323 to 28815): Exon 1 25560 25566 ( 7 n); cDNA 254 260 ( 7 n); score: 1.000 Intron 1 25567 26713 (1147 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.68) Exon 2 26714 26753 ( 40 n); cDNA 261 300 ( 40 n); score: 0.675 Intron 2 26754 26932 ( 179 n); Pd: 0.000 (s: 0.68), Pa: 0.430 (s: 0.94) Exon 3 26933 27374 ( 442 n); cDNA 301 741 ( 441 n); score: 0.904 MATCH C04HBa0127E11.1+ SGN-U344226- 0.904 489 0.592 C PGS_C04HBa0127E11.1+_SGN-U344226- (25560 25566,26714 26753,26933 27374) Alignment (genomic DNA sequence = upper lines): AGAAGAAGTT GTACATGAAG ACATTCAAGT TCATCAACTT GGCTTCTGCA ACACTTGGAT 25619 ||||||| AGAAGAA... .......... .......... .......... .......... .......... 260 TGTTTCAACT TTCTCCTGTT TTTTTTTTTT TTTTTTTGCT TGTTTTTAGT GTGGGGAATT 25679 .......... .......... .......... .......... .......... .......... 260 GGTTCAAACA ATTATTTTTT TTGGGATTCT ATTCTAAAAT GATTTTGTGA TGATTTAATT 25739 .......... .......... .......... .......... .......... .......... 260 AAGGAAAAAA AGGCTCAAAT ATGTCGTCAA ACTATTATAA ACGACTCATT CATGTCATTC 25799 .......... .......... .......... .......... .......... .......... 260 GCCATTACAA AACAGGTTTC ATCTTATGCA ACTCTTGCAA AAACAGCTGA ATCTAAGAAG 25859 .......... .......... .......... .......... .......... .......... 260 TCGTTAAACT TGAACATTAA CAAAACTCAT TTTCGCCATC GGTCGTTGAA AGTTTGATTC 25919 .......... .......... .......... .......... .......... .......... 260 ATCTATGTCA TTTTACCTAA CAGGATTCTG ATGTCATCTT CTTGAACTTT TGATAAAAAA 25979 .......... .......... .......... .......... .......... .......... 260 TGATCGTTCA AGTTTCATAA GCTCCAAAAA TACTAAAGCT CACACAACAA TCAACGAACG 26039 .......... .......... .......... .......... .......... .......... 260 ACCAGGTGAT CGATCTGTCA GTCTCAGCAA GTCATAAATG ACTTGGGATC GCTATAGGAA 26099 .......... .......... .......... .......... .......... .......... 260 TGCTCTAAAC GATGCACAGA AGATAAAATA CTAAAAATGA CAAGAAGGGT CATTACAAAA 26159 .......... .......... .......... .......... .......... .......... 260 TCACATGAAT AAGTCGTTTC TCAAACGAAA TTGATATAGA AGAAACAAAC TTTTAAATTT 26219 .......... .......... .......... .......... .......... .......... 260 TGGTGACACT AAATTATGGA TCAGTAAATT TTATTAAAGG GAATAAAATT GTCACTAAAG 26279 .......... .......... .......... .......... .......... .......... 260 CTTTGAAGGG TATTTTCTTT CATATAAATT TTATGCAACT ACAACAACAT ACAACACAAT 26339 .......... .......... .......... .......... .......... .......... 260 TTTTATATAA CTCATCAATC ATTATACAAT TATCAAATTA CTTTAATATA ATTTTGAATT 26399 .......... .......... .......... .......... .......... .......... 260 CCAACGAAAT AAAACTAAAA TTCAATACAA AAGTTGCTCA ATTTTTACTA AATAAATTTC 26459 .......... .......... .......... .......... .......... .......... 260 ATTTTGAGAA ATCACTAAAA ATTAATTTTG AGAACTTGAA CTTCAAGTTC TAACAAAATC 26519 .......... .......... .......... .......... .......... .......... 260 TTTTATGGAA TAACCTCCAT GGATGAATTC GAATTAATTT GTGCTGACTT ATCGAATATT 26579 .......... .......... .......... .......... .......... .......... 260 TTATATCTTT CTCTTCAAAG TTACAAAATG CATCTTCAAA TTGAAAAGTC ATGCTCCTAT 26639 .......... .......... .......... .......... .......... .......... 260 TTTTCCCTAT AGATTCCCCA AACAAGGAAA ATTATCATTT AAAGATTAAA TTTGGAATTT 26699 .......... .......... .......... .......... .......... .......... 260 CTTATTTGAC TATTAATAAT ATAATTTTTT AACCACTATG AAATTTTTAA AATCATAAAT 26759 ||| || ||||| || |||| ||||||| || || .......... ....CATAGG ATTTTTTTTC AAATGGTATG AAATTTTAAA AAAT...... 300 TTTAAAAATC TTTCGTTCCT AGTTAAAATG TCGTAACTAG TCTTTCCATA AAACAGATGT 26819 .......... .......... .......... .......... .......... .......... 300 ACAATTAATT AATTAGCTAA TTAAGTGATT TAGGTGGAGG AACAATTAAA CAAACTCTTC 26879 .......... .......... .......... .......... .......... .......... 300 TAATCTGAAT ATTTAAATGC CTTTAGTCTA ATATGAGATA TCTTTTTAAA TAGAGGGAAA 26939 ||||||| .......... .......... .......... .......... .......... ...AGGGAAA 307 AGGGTCTGAT ATACCCCTCA ACTTTGTCAT TTGGAGTTGA TATACCCCTC GTTATAAAAG 26999 |||||||||| ||||| |||| |||||||||| || ||| ||| |||| ||||| || ||||||| AGGGTCTGAT ATACCTCTCA ACTTTGTCAT TTAGAGCTGA TATATCCCTC GTAATAAAAG 367 TGGCTCATAT ATGCCCTTAC CGTTATATAA ACGGCTCACA TATACCCCTA CCGTTACAAA 27059 ||| |||||| ||||||||| ||||||| || |||||||||| ||||||||| |||||| ||| TGGTTCATAT ATGCCCTTAT CGTTATACAA ACGGCTCACA TATACCCCTG CCGTTAGAAA 427 ATGGCTCACA TATATCCTTC ATTTCACGAA AGCTAAAAAA TTAGTTTTAA ATTTATATTT 27119 |||||||||| |||| ||||| |||| ||||| || ||||||| |||||||||| |||||||||| ATGGCTCACA TATACCCTTC ATTTAACGAA AGTTAAAAAA TTAGTTTTAA ATTTATATTT 487 ATTACTTCTA AAAAAAATTT --AAAAATTA TTTAGGGGTA TATATGATTC TTCTATCAAA 27177 ||||||||| | ||| ||||| || ||||||| || |||||||||| |||||||||| GTTACTTCTA ATTTTTTTTT AAAAAAAATA TTTAGGGATA TATATGATTC TTCTATCAAA 547 GTTCAAGGTA TATTTTAATT TTTTTTCATA TATTAATTAT TTTTTGACTT CTTTTATTAT 27237 |||||||||| |||||||| |||||||||| | |||||| |||||||||| |||||||||| GTTCAAGGTA TATTTTAA-- TTTTTTCATA CAAAAATTAT TTTTTGACTT CTTTTATTAT 605 AATTATTTGA ATTTCTTATT CTTATTTTG- TTTTTTCTTT CATTCCTTAG TTTAAAGAAT 27296 ||| |||||| ||||||||| ||||||||| |||||||||| |||||||||| |||||| || AATAATTTGA GTTTCTTATT CTTATTTTGT TTTTTTCTTT CATTCCTTAG TTTAAATAA- 664 AAAAAATTAA ACTATTTTTT TTGTGTGTAT TGTAATTTAA TTTCGTATTT GAAGAAAAAA 27356 |||||||| | | |||||||| |||||||||| |||||||||| ||||||||| |||||||||| AAAAAATTCA AATATTTTTT TTGTGTGTAT TGTAATTTAA TTTCGTATTC GAAGAAAAAA 724 TTTGGTCATC TACAATAA 27374 ||||||||| |||||||| -TTGGTCATC TACAATAA 741 hqPGS_C04HBa0127E11.1+_SGN-U344226- (26933 27374) ******************************************************************************** EST sequence 7 +strand 826 n (File: SGN-U344226+) 1 ATTGAAACAA AAGCTGGAGC TCCACCGCGG TGGCGGCCGC TCTAGAACTA GTGGATCCCC 61 CGGGCTGCAG GAATTCGGCA CGAGCTTATT GTAGATGACC AATTTTTTCT TCGAATACGA 121 AATTAAATTA CAATACACAC AAAAAAAATA TTTGAATTTT TTTTATTTAA ACTAAGGAAT 181 GAAAGAAAAA AACAAAATAA GAATAAGAAA CTCAAATTAT TATAATAAAA GAAGTCAAAA 241 AATAATTTTT GTATGAAAAA ATTAAAATAT ACCTTGAACT TTGATAGAAG AATCATATAT 301 ATCCCTAAAT ATTTTTTTTA AAAAAAAATT AGAAGTAACA AATATAAATT TAAAACTAAT 361 TTTTTAACTT TCGTTAAATG AAGGGTATAT GTGAGCCATT TTCTAACGGC AGGGGTATAT 421 GTGAGCCGTT TGTATAACGA TAAGGGCATA TATGAACCAC TTTTATTACG AGGGATATAT 481 CAGCTCTAAA TGACAAAGTT GAGAGGTATA TCAGACCCTT TTCCCTATTT TTTAAAATTT 541 CATACCATTT GAAAAAAAAT CCTATGTTCT TCTCTTTACT ATTTTTGGAC ATATCATTCA 601 TGTATCGGTA CGAGATATAT CATTGGTGGT GTACCTTGTA TTAAACAAAA TAATGGATCG 661 AAATGTGAAT GTTTCGGAAC ATAAACAACG TTTCGAGAAG CATTGTATCA AAATATGGAG 721 GGATCATTTG GGTAGGTTTG TCTTGTTTTA ACAAGGGAAT GTATTGAGAC ACAATATATA 781 CATAACGTTT AAAGGAGGGT CGAAAACCCT AAATTTTAAT TTTTAG Predicted gene structure (within gDNA segment 22277 to 31287): Exon 1 23071 23080 ( 10 n); cDNA 182 191 ( 10 n); score: 0.800 Intron 1 23081 24352 (1272 n); Pd: 0.990 (s: 0), Pa: 0.000 (s: 0.62) Exon 2 24353 24394 ( 42 n); cDNA 192 231 ( 40 n); score: 0.619 Intron 2 24395 25127 ( 733 n); Pd: 0.567 (s: 0.62), Pa: 0.943 (s: 0) Exon 3 25128 25135 ( 8 n); cDNA 232 238 ( 7 n); score: 0.875 Intron 3 25136 25559 ( 424 n); Pd: 0.000 (s: 0), Pa: 0.945 (s: 0) Exon 4 25560 25584 ( 25 n); cDNA 239 263 ( 25 n); score: 0.680 Intron 4 25585 26603 (1019 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.64) Exon 5 26604 26723 ( 120 n); cDNA 264 382 ( 119 n); score: 0.587 Intron 5 26724 27152 ( 429 n); Pd: 0.000 (s: 0.56), Pa: 0.000 (s: 0) Exon 6 27153 27184 ( 32 n); cDNA 383 413 ( 31 n); score: 0.656 Intron 6 27185 27564 ( 380 n); Pd: 0.883 (s: 0), Pa: 0.000 (s: 0.74) Exon 7 27565 27677 ( 113 n); cDNA 414 526 ( 113 n); score: 0.832 MATCH C04HBa0127E11.1+ SGN-U344226+ 0.706 350 0.424 C PGS_C04HBa0127E11.1+_SGN-U344226+ (23071 23080,24353 24394,25128 25135,25560 25584,26604 26723,27153 27184,27565 27677) Alignment (genomic DNA sequence = upper lines): AAGGAAAAAG GTACCTCTAA CCTGATCTTT CTAATTTAAA GTTGAGGTCA ATTATGTTCT 23130 || |||||| AAAGAAAAAA .......... .......... .......... .......... .......... 191 TCGATCCAGA TTTTCATAAT CTGTTTGAAC TTACAGATGT GTTCCGACGT TTATATGTGT 23190 .......... .......... .......... .......... .......... .......... 191 TGTAAATTGG CAACCTCAAG AATCTACAGA CACTTTGTGT TGTAAATGAA ACTGGACGCT 23250 .......... .......... .......... .......... .......... .......... 191 TATACCAACT ACCCCACGAG ACAGCTGACC TAATAAATCT AAGACATTTA GTTGCTCGGT 23310 .......... .......... .......... .......... .......... .......... 191 ATTGAGAACC TCTGGTACGT ATAAACAAAC TCACTAGTCT TCATGTTCTT AAAGACATCT 23370 .......... .......... .......... .......... .......... .......... 191 CTTGTGATCA GTGGGAAGAT ATTGACCCTG CTTATTTAAT CAATCTTCGA GAATTAACCA 23430 .......... .......... .......... .......... .......... .......... 191 TGCGTAATAT TTGGAATTAT TACTCCCTAA ACAACATTAG CAGCTTGACA AACCTAAGCA 23490 .......... .......... .......... .......... .......... .......... 191 CTCTCACATT GTTTTCTGAA GAAGTAATAT CATTCCCATC CCTTCAATTT GTTAATCGTT 23550 .......... .......... .......... .......... .......... .......... 191 GTGAAAAGCT CCAGAAATTG TATTTAAATG GGAGAATAGA GAAATTGTCT CCGTTTCCAA 23610 .......... .......... .......... .......... .......... .......... 191 ATTCCATCAC AATGATTGTT CTGAGGGACT CAGTACTGAC AGAAGATCCG ATGCCTATTT 23670 .......... .......... .......... .......... .......... .......... 191 TGGGAATGTT GCCAAACCTA AGGAATCTCG AATTGTGTAG AGCTTATGAA GGAGAAGAAA 23730 .......... .......... .......... .......... .......... .......... 191 TAACGAGCAA TGATAACAGC TTCAGTCAAC TAAAGTTCAT TTATCTTGGT TTTCTTTCAA 23790 .......... .......... .......... .......... .......... .......... 191 AGCTAGAAAG ATGGAATTTA AGCACAAACG CGATGCCTCT CATTAAAGCT CTTCATATCG 23850 .......... .......... .......... .......... .......... .......... 191 ATCATTGTCC GAAGCTCATG GAGATTCCAG AGAGAATGAA AGGCGTGAAG CGTATTTGAT 23910 .......... .......... .......... .......... .......... .......... 191 TATAGCAAAG GTAAATATAC AAACAAATCC TAATCTTACA TAATTTTGTA GAAAAATCAC 23970 .......... .......... .......... .......... .......... .......... 191 CTATAGGAGT TTTTTTTCCA AACATATATG AAATCTCGTG TATGAAAACA GCGTAAAATT 24030 .......... .......... .......... .......... .......... .......... 191 CATATGAAAT ATATCTATCT CACTTAGAGC TTAGAATTTC GTTCATAATT TTTGTGTATG 24090 .......... .......... .......... .......... .......... .......... 191 AACAATATAT AAACTTTGTA TAAAGTTCAT TACTGAAAAT CTCATACAAC TACAACAACA 24150 .......... .......... .......... .......... .......... .......... 191 TTGTATACAA TATTCATATC AAACTAAATA CAACTACAAT ACCAGCAAAA GATATGTTGC 24210 .......... .......... .......... .......... .......... .......... 191 AGACTGCAGT GGATGAAGTT GCTCCTTCCA GGTCTCGGGT TTAAATCCTC GGTATGGAAA 24270 .......... .......... .......... .......... .......... .......... 191 AATTATTGGT ATGGAGCACT CTCCTCAAAT GGCCCCTACG TGGCGTGAAT TCGGGATAGT 24330 .......... .......... .......... .......... .......... .......... 191 CAGGCTCCCA CGGATACCAG ACACCAAATG GGAGATCAGA AAAAAATACA ACTATGATAA 24390 || |||| || || ||| || | | | ||| |||| .......... .......... ..ACAAAATA AGA-ATAAGA AACTCAAATT ATTATAATAA 228 CATAGTAAAC TTAAAAACAA TTTACATATA ACTCATCCGG CATTATATGA TTTTTGATAC 24450 | -AAG...... .......... .......... .......... .......... .......... 231 AATTCGTCTG TAGTTTTGAA TTTGAATGAA CTAAAATTAC AATAATCTCA AATTTTATGT 24510 .......... .......... .......... .......... .......... .......... 231 GTTTCTCAAG AGTACAACAC AATGAATCTT CTTAAAACTA TCATAAAATC CATCCAAGGT 24570 .......... .......... .......... .......... .......... .......... 231 TACAACACAA AAACTCTAGA TTTGTCGGAA AAGATGGCAG AAAGAGATCT AGAAAATCAC 24630 .......... .......... .......... .......... .......... .......... 231 CTTCGTAAGC TAATAACAAA ACACAAATAC CTTGTGGTGA TTGATGATAT GTGGCAGCGA 24690 .......... .......... .......... .......... .......... .......... 231 GAAGCGTGGA AGAGTTTGAA AAGAGCATTC TCGGATAGCA ATAATGCCAG CAGAGTTATT 24750 .......... .......... .......... .......... .......... .......... 231 ATTACCACTC GCAAAGTGGG TGTCGCTGAA AGAGCAGACA ACAGAGGTTT TGTCCATGAA 24810 .......... .......... .......... .......... .......... .......... 231 CTTTGTTTCC TAAGACAAGA AGAAAGTTGG GAACTCTTTT GTAGGAAACT AGTTGATGTT 24870 .......... .......... .......... .......... .......... .......... 231 CGAGCAATGA TTCCAGCGAT GGTAAGTCTA GTTAAGGATA TGATGGAAAC TATAGAGGCC 24930 .......... .......... .......... .......... .......... .......... 231 TACCTCTTGC AATTGTTGTA TTGAGTGGAC TACTTTAGCA TGAAAGGGGA CAAGACGAAT 24990 .......... .......... .......... .......... .......... .......... 231 GGCAAAAAGT TAAAGACTGC CTTTGGAAGG ACATTGAAGA AGACTCTATT GAAATCTCCT 25050 .......... .......... .......... .......... .......... .......... 231 ACATACTATC ATTAAGCTTC AACGATTTTT GTCAGCTACG CTCAAGCGGT ATTTTCTGTA 25110 .......... .......... .......... .......... .......... .......... 231 CTTTGGTATT TTTCCAGAAG ATCAAGTGGT CGAGGCCAAT AACATAATAC GGATGTGGAT 25170 ||| |||| .......... .......AAG -TCAA..... .......... .......... .......... 238 GGCAGAGGGT TTCACCATAC CAAGAGGAGA AGAAAGAATG GAAAATGTCG CTGAAGGCTT 25230 .......... .......... .......... .......... .......... .......... 238 GTTGAATGAG CTGATAAGAC GAAGCTTGGT TCAAGTGGCT AAAACATTTT GGAAAAAAGT 25290 .......... .......... .......... .......... .......... .......... 238 TACTGAAAAT GTAGGGTTCA TGATTTACTC CGTGATCTTG CGATATAAAA GGCATCCGAC 25350 .......... .......... .......... .......... .......... .......... 238 ATAAACCTCT TTGACATTTA TCATCCAACC ATTCTTAGTC AAGGAGAAAG GTACCACTCA 25410 .......... .......... .......... .......... .......... .......... 238 CTTGATCTTT CTAATTTGAA GTTGAGGTCA ATTATGTTCT TCGATCCAAA TATTTGTAAT 25470 .......... .......... .......... .......... .......... .......... 238 GTGTTCCAAC ATATAGATGT GTTTTGATAT CTATATGTGT TGTACTTGGA AATTAAGAAG 25530 .......... .......... .......... .......... .......... .......... 238 GTGTTATACC TTTGTGTTAA TATTTCTAGA GAAGAAGTTG TACATGAAGA CATTCAAGTT 25590 | || || || | ||||| | ||| .......... .......... .........A AAATAATTTT TGTATGAAAA AATT...... 263 CATCAACTTG GCTTCTGCAA CACTTGGATT GTTTCAACTT TCTCCTGTTT TTTTTTTTTT 25650 .......... .......... .......... .......... .......... .......... 263 TTTTTTGCTT GTTTTTAGTG TGGGGAATTG GTTCAAACAA TTATTTTTTT TGGGATTCTA 25710 .......... .......... .......... .......... .......... .......... 263 TTCTAAAATG ATTTTGTGAT GATTTAATTA AGGAAAAAAA GGCTCAAATA TGTCGTCAAA 25770 .......... .......... .......... .......... .......... .......... 263 CTATTATAAA CGACTCATTC ATGTCATTCG CCATTACAAA ACAGGTTTCA TCTTATGCAA 25830 .......... .......... .......... .......... .......... .......... 263 CTCTTGCAAA AACAGCTGAA TCTAAGAAGT CGTTAAACTT GAACATTAAC AAAACTCATT 25890 .......... .......... .......... .......... .......... .......... 263 TTCGCCATCG GTCGTTGAAA GTTTGATTCA TCTATGTCAT TTTACCTAAC AGGATTCTGA 25950 .......... .......... .......... .......... .......... .......... 263 TGTCATCTTC TTGAACTTTT GATAAAAAAT GATCGTTCAA GTTTCATAAG CTCCAAAAAT 26010 .......... .......... .......... .......... .......... .......... 263 ACTAAAGCTC ACACAACAAT CAACGAACGA CCAGGTGATC GATCTGTCAG TCTCAGCAAG 26070 .......... .......... .......... .......... .......... .......... 263 TCATAAATGA CTTGGGATCG CTATAGGAAT GCTCTAAACG ATGCACAGAA GATAAAATAC 26130 .......... .......... .......... .......... .......... .......... 263 TAAAAATGAC AAGAAGGGTC ATTACAAAAT CACATGAATA AGTCGTTTCT CAAACGAAAT 26190 .......... .......... .......... .......... .......... .......... 263 TGATATAGAA GAAACAAACT TTTAAATTTT GGTGACACTA AATTATGGAT CAGTAAATTT 26250 .......... .......... .......... .......... .......... .......... 263 TATTAAAGGG AATAAAATTG TCACTAAAGC TTTGAAGGGT ATTTTCTTTC ATATAAATTT 26310 .......... .......... .......... .......... .......... .......... 263 TATGCAACTA CAACAACATA CAACACAATT TTTATATAAC TCATCAATCA TTATACAATT 26370 .......... .......... .......... .......... .......... .......... 263 ATCAAATTAC TTTAATATAA TTTTGAATTC CAACGAAATA AAACTAAAAT TCAATACAAA 26430 .......... .......... .......... .......... .......... .......... 263 AGTTGCTCAA TTTTTACTAA ATAAATTTCA TTTTGAGAAA TCACTAAAAA TTAATTTTGA 26490 .......... .......... .......... .......... .......... .......... 263 GAACTTGAAC TTCAAGTTCT AACAAAATCT TTTATGGAAT AACCTCCATG GATGAATTCG 26550 .......... .......... .......... .......... .......... .......... 263 AATTAATTTG TGCTGACTTA TCGAATATTT TATATCTTTC TCTTCAAAGT TACAAAATGC 26610 ||||| .......... .......... .......... .......... .......... ...AAAATAT 270 ATCTTCAAAT TGAAAAGTCA TGCTCCTATT TTTCCCTATA GATTCCCCAA ACAAGGAAAA 26670 | ||| || | | | || | || ||| | |||||| | ||| | || |||| ACCTTGAACT TTGATAG-AA GAATCATATA TATCCCTAAA TATTTTTTTT A-AAAAAAAA 328 TTATCATTTA AAGAT-TAAA TTTGGAATTT CTTATTTGAC TATTAATAAT ATAATTTTTT 26729 ||| | | | | || |||| ||| || | || ||| || | | ||| || TTAGAAGTAA CAAATATAAA TTTAAAACTA ATTTTTTAAC TTTCGTTAAA TGAA...... 382 AACCACTATG AAATTTTTAA AATCATAAAT TTTAAAAATC TTTCGTTCCT AGTTAAAATG 26789 .......... .......... .......... .......... .......... .......... 382 TCGTAACTAG TCTTTCCATA AAACAGATGT ACAATTAATT AATTAGCTAA TTAAGTGATT 26849 .......... .......... .......... .......... .......... .......... 382 TAGGTGGAGG AACAATTAAA CAAACTCTTC TAATCTGAAT ATTTAAATGC CTTTAGTCTA 26909 .......... .......... .......... .......... .......... .......... 382 ATATGAGATA TCTTTTTAAA TAGAGGGAAA AGGGTCTGAT ATACCCCTCA ACTTTGTCAT 26969 .......... .......... .......... .......... .......... .......... 382 TTGGAGTTGA TATACCCCTC GTTATAAAAG TGGCTCATAT ATGCCCTTAC CGTTATATAA 27029 .......... .......... .......... .......... .......... .......... 382 ACGGCTCACA TATACCCCTA CCGTTACAAA ATGGCTCACA TATATCCTTC ATTTCACGAA 27089 .......... .......... .......... .......... .......... .......... 382 AGCTAAAAAA TTAGTTTTAA ATTTATATTT ATTACTTCTA AAAAAAATTT AAAAATTATT 27149 .......... .......... .......... .......... .......... .......... 382 TAGGGGTATA TATGATTCTT CTATCAAAGT TCAAGGTATA TTTTAATTTT TTTTCATATA 27209 ||||||| | ||| | | | || || || | ...GGGTATA TGTGAGCCAT TT-TCTAACG GCAGG..... .......... .......... 413 TTAATTATTT TTTGACTTCT TTTATTATAA TTATTTGAAT TTCTTATTCT TATTTTGTTT 27269 .......... .......... .......... .......... .......... .......... 413 TTTCTTTCAT TCCTTAGTTT AAAGAATAAA AAATTAAACT ATTTTTTTTG TGTGTATTGT 27329 .......... .......... .......... .......... .......... .......... 413 AATTTAATTT CGTATTTGAA GAAAAAATTT GGTCATCTAC AATAAGTTTT ACAAGAATAT 27389 .......... .......... .......... .......... .......... .......... 413 TAGTGAAACA TAAATAAATT TGATTATCAA AATAATAATT ATAAACTAGT CATTGAAACA 27449 .......... .......... .......... .......... .......... .......... 413 AAAAAAAAAG TCAAAGAAAA TATGTTTGAC GAGGATTGGG ATTATATTTT TTAGAAAAAA 27509 .......... .......... .......... .......... .......... .......... 413 AATAATAAAA ATTTAGATTA AAATTATTTT TTTTTCATTT CCGTTAGAGG AAAAGAGTAT 27569 |||| .......... .......... .......... .......... .......... .....GGTAT 418 ATCTGAGTCA TTTGTTTACA AGTAGGGGTA TATATGAGTC ACTTTCATAA TAAGGGGTAT 27629 || |||| | ||||| || || ||| | ||||||| | ||||| || | |||| ||| ATGTGAGCCG TTTGTATAAC GATAAGGGCA TATATGAACC ACTTTTATTA CGAGGGATAT 478 ATCAGCTCTA AATGACAAAG TTGAGGGGTA TATCAGACCC TTTTCCCT 27677 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||| ATCAGCTCTA AATGACAAAG TTGAGAGGTA TATCAGACCC TTTTCCCT 526 hqPGS_C04HBa0127E11.1+_SGN-U344226+ (27565 27677) ******************************************************************************** EST sequence 36 +strand 725 n (File: SGN-U326781+) 1 TGTGTTTTCA GCCTTGACCA CTCGATCTTC TGGAAACATA CCAAAGTAGA GAAAACACTG 61 CTTGAGCTCA ATTGACAAAT CATTGTAGCT TAGTGATAGT ATGTTGGAGA TTTCAACAGA 121 TTTATCTTCT TTAATGCTCT TCCAAAGGTG ATCTTTCACC TTTTGCCATT CATCTAGATC 181 CTTTTTATGC GAAAGTAGTC CGCTCAATAC AACAATTGCA AGAGGTAAAC CTCTACACTT 241 TTCCACCATA TCCTTAGCTA GACTTTCCAT TTCTGCAACC ATTGCTCGAA CATCAAGTAG 301 TTTCCTAAGA AAGAGATCCC AACTTTCTTC TTGACTTAGG AAACGAAGTT TATGAACAAA 361 ACCTCTGTCG GCTGCTCTTT CAGCGATATC CTCTTTGCGC GTGGTAATAA TGACTCTGCT 421 GCCATTCTTG TCATCCGGGA ATGCTCTTTT CAAACTTTCC CATGCTTCTC TTTGCCATAT 481 ATCATCAACC ACTACAAGGT ATTTGCGTTC TTTCAGTAGA TCACGAAGGT GATTTTCTAG 541 ATCTCTTTCA TCCATCTTTT CCAACAATCC TAGAGTTCCC ATGGTGCAAC CTTGGATGGA 601 TTTTATGATA GTCTTAAGAA GATCCATTGT GTTGTACTCT TGAGAAACAC ATATCCAAGC 661 ACGTGTAGGC CAGGTATTGA CTATACGAGG ACTTCTGTAG AGGTTTCTTG CAAGAGTGGT 721 CTTGC Predicted gene structure (within gDNA segment 35975 to 28164): Exon 1 34938 34824 ( 115 n); cDNA 4 118 ( 115 n); score: 0.913 Intron 1 34823 33924 ( 900 n); Pd: 0.000 (s: 0.92), Pa: 0.981 (s: 0) Exon 2 33923 33918 ( 6 n); cDNA 119 124 ( 6 n); score: 0.667 Intron 2 33917 29960 (3958 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.84) Exon 3 29959 29361 ( 599 n); cDNA 125 723 ( 599 n); score: 0.878 MATCH C04HBa0127E11.1- SGN-U326781+ 0.884 720 0.993 C PGS_C04HBa0127E11.1-_SGN-U326781+ (34938 34824,33923 33918,29959 29361) Alignment (genomic DNA sequence = upper lines): GTTTTCAGCC TCGAGCTCTT GATCTTCTGG AAAAATACCG AAGTAGAGAA AACACTGCTT 34879 |||||||||| | || | || |||||||||| ||| ||||| |||||||||| |||||||||| GTTTTCAGCC TTGACCACTC GATCTTCTGG AAACATACCA AAGTAGAGAA AACACTGCTT 63 GAGCTCAGTT GACAAATCAT TGTAGCTTAA TGATAGTATG TAGGAGATTT CAATAGAGTC 34819 ||||||| || |||||||||| ||||||||| |||||||||| | |||||||| ||| | GAGCTCAATT GACAAATCAT TGTAGCTTAG TGATAGTATG TTGGAGATTT CAACA..... 118 TTCTTCAATG TTCTTCCAAA GGCGGTCTTT CACCTTTTTC CATTCGCCTG GCCCCCTTTT 34759 .......... .......... .......... .......... .......... .......... 118 ATGCGAAAGT AGTCCGCTCA ATACAACAAT TGCAAGAGGT AAGCCTCCAC ACTTATCCAC 34699 .......... .......... .......... .......... .......... .......... 118 CATATCCTTA GCTAGCCTCT CCATTGTGGA GGTCATTGCT CGAACATCAA GTAGTTTCCT 34639 .......... .......... .......... .......... .......... .......... 118 GCAAAAGAGA TCCCAACTTT CTTCTTGGTT TAGGAAACGA AGTTTATGGA CGAAACCTCT 34579 .......... .......... .......... .......... .......... .......... 118 GTTGTATGCT CTTTCAGCAA CATCTTGCTT GCGCGTGGTG ATAATAACTC TGCTGCCATT 34519 .......... .......... .......... .......... .......... .......... 118 CTTGCTATCC GGAAATGCTC TTTTCAAACT CTCTCATGCT TCTCTCTGCC ATATATCATC 34459 .......... .......... .......... .......... .......... .......... 118 AACCACCACA AGGTATTTGC GTTTTTTTAA AAGATTACGA AGGTAAATTT CTAGATCTCT 34399 .......... .......... .......... .......... .......... .......... 118 CTCTGTCATC CTTTCCAACA AATCTAGAGT TTCCTTGGTG CAACCTTGGA TGGATTTTAT 34339 .......... .......... .......... .......... .......... .......... 118 GATATACCTG AGGAGATCCA CAGTGTTGTA CTCTTGAGAA ACACATATCC AAGCTCGTGT 34279 .......... .......... .......... .......... .......... .......... 118 ATGGAAGCTA TTGACTATAT CAGGACTGAT GTAGAGATTT CTTGCAAGAG TGGTCTTGCC 34219 .......... .......... .......... .......... .......... .......... 118 TAAACCACCC ATGCCATAAA TGGAGATGAC GCTTCGACGA GGCTCTTCTT TGAGAAGTTC 34159 .......... .......... .......... .......... .......... .......... 118 AGATAGCAAT CTTTCTACAA CATCCTGAAA TCCAACAAAA ATGTGATCCT GACCATCCAC 34099 .......... .......... .......... .......... .......... .......... 118 ATAGGAGGTG GTTCTCCTCA ATGTTGTAAC CATGGCAGAT GGATTGTTTG GCCGCTTACT 34039 .......... .......... .......... .......... .......... .......... 118 TGATCCATCT CCTGAATTAG TACTATTGAT ATTTGTAATA CCATAAGTCT CTCGCTTGCG 33979 .......... .......... .......... .......... .......... .......... 118 AGAGATATCC ATAATTCGTT GCTTGAGTGA TTGTATCTCT TTGGATACTT TGTAGAATTT 33919 |||| .......... .......... .......... .......... .......... .....GATTT 123 GGTGTCCTTC TTACAGATGC AAGCGCAACC CTTGAGACAA CTAGCAAATT GATCGTCACC 33859 A......... .......... .......... .......... .......... .......... 124 TTTACCAGCC TTGAAGCTGT AAGTCTCTAG TATAGCGACA GCGTCATTTG CAATAGAGTT 33799 .......... .......... .......... .......... .......... .......... 124 GATCTCAAAC ACCCATTGTT GAACTCTTTG ATCTCCACAT TGCTTTAGTT CTGCATCTCT 33739 .......... .......... .......... .......... .......... .......... 124 GAGGAAAGAC TGCATGAAGA GTAGATCATT TCTCAGCCAT CTAACTTCAT CTCTGAGATT 33679 .......... .......... .......... .......... .......... .......... 124 TGTAAGCAGG GAAACTTCCT GAATGAGGAA ATCACCCAGT TTTTTAACTG CAAATGACAC 33619 .......... .......... .......... .......... .......... .......... 124 AAAGGCATCA GCCATCTTCA GGAGTATTGA TTTTTATCTG GAGAAATGGG GTCTGTATAT 33559 .......... .......... .......... .......... .......... .......... 124 TGGAATACTA GTCAGAAATG AGAGATAGAG ATATACACTC AAAAACAGTT GACATTAATA 33499 .......... .......... .......... .......... .......... .......... 124 CTGATTAAAA GTTGAGTAAA AACGAAAGAA ATAATACATA AACATGACCC TTAACTTGGC 33439 .......... .......... .......... .......... .......... .......... 124 TTCAGCCGAC AACAATGACC TTTAACTTTG GGTGTGCACA ATTAGACACT TAAAAAATTA 33379 .......... .......... .......... .......... .......... .......... 124 TATATAATTG AAGAAAAGAC ATATTCCTCT ATGTACTAGA CCCTTAAGAG TTATGTTTAT 33319 .......... .......... .......... .......... .......... .......... 124 ATACTATGCT TTTTTTGAAA TATGTATTAA AGCTTCTTTA ACTACCATTA CACAACTTGT 33259 .......... .......... .......... .......... .......... .......... 124 GGGAAAATTT ATGTGTGGAG AAAAGTCTAA AAAGTAAATA ATTATAAAAG AATTATGATT 33199 .......... .......... .......... .......... .......... .......... 124 GTCAAATATG TCAAACAAGA ATGTGGAAAA TGAACAAGAA AAAATTAGAG AAATGAAAGT 33139 .......... .......... .......... .......... .......... .......... 124 GAAATGTGAC TCATTTGACT GGGCAAGAGA AAATCAAAGT GTTCCCATTT GAAAAAATTA 33079 .......... .......... .......... .......... .......... .......... 124 GAGTAATGAA ACTATATATG GAGGAAAAGT CTATCAGTAG TAGTTCTGTG TTGTCCAATT 33019 .......... .......... .......... .......... .......... .......... 124 CAATGGTCCA CCTTATAAAT TTATTTGGGT ATGATTATGA AGAGGCTGAA ATAGGACATC 32959 .......... .......... .......... .......... .......... .......... 124 GATATATATA TATATATATA TATATATAGC TTCATCGAAA AGGAGTTCTC TCCACGTCTT 32899 .......... .......... .......... .......... .......... .......... 124 TCATTCTCTC GGGTATCTCT TTTAGCTTTG GACATTGATG GATAGCAAAA CCTTTAATAT 32839 .......... .......... .......... .......... .......... .......... 124 GAGGCGTGGC ACTTGCGGGC TAAATGCCAT TTCCCTAAGT TCTCAAGACG AAGGATCTCC 32779 .......... .......... .......... .......... .......... .......... 124 AGTTGACTGA AGTTGTTATC AATGCATGTA ATTTCTTTTC CTTCATAAGC TCTAAAAAAG 32719 .......... .......... .......... .......... .......... .......... 124 TTCAAGATTC CTTAGGTTTG GCAACATTCC CAAAATAGGC ATCGGATCTT CTGTGAGTTT 32659 .......... .......... .......... .......... .......... .......... 124 TTGAGTCCGA AAGAACCATC ATTACGATGG AATTTGGAAG GCATAATACA TAAATATGCC 32599 .......... .......... .......... .......... .......... .......... 124 CTTTAACTTG ACTTCAAATC ACATTTATGC CCTTCAACTT TGGATGTGCA CAAGTAGACA 32539 .......... .......... .......... .......... .......... .......... 124 CTTAAACTTG TATAAAGTTG AACAAACAGA CACACATGTC CTACATGTCA TCCTACTTGT 32479 .......... .......... .......... .......... .......... .......... 124 CATTTTTTGT CCGACGTGGT GTTCTACGTG TATTGTGTCA TGTAGGACTC ATGTGTTTAT 32419 .......... .......... .......... .......... .......... .......... 124 TTATTTAAAA GTTGGATAGT TAAAGTGTCT GTTTGTGCAT TATGAAAGTT GGAGGTCAAA 32359 .......... .......... .......... .......... .......... .......... 124 GTTAAAATTT GAAGGCAAAT TTAGGGTCCA ATATATGTAT TATGCTGGAA ATTGGTCCGA 32299 .......... .......... .......... .......... .......... .......... 124 CAGAGGCAGC TTCTCAATTC TCCCTTGTAA CCATAATTTG TGGAGATTAT GACAAGAATT 32239 .......... .......... .......... .......... .......... .......... 124 AACAAATTCT AGGGCTGTGA ATGATTCATC ATCTTTACAC AACAATCTGA GAGTGCTAAG 32179 .......... .......... .......... .......... .......... .......... 124 GTTTTTCGAG CTGCTAATGT TGTTTAGGGA GTAGGATTTT CTTAATATTA TGCATTCTTA 32119 .......... .......... .......... .......... .......... .......... 124 ATTATCGAAG ATTGACTAAG TCAATAGGGA GTGATCACAT TGGTTCCTTT TAAGAACTTG 32059 .......... .......... .......... .......... .......... .......... 124 ACGACTAGTT AAGAATTTAA TAAAGTAGAG AAAATTATAG GCTTATGTCA TCTGCGAAAA 31999 .......... .......... .......... .......... .......... .......... 124 TACTGCAAAA AAGAAGTGTT GAAATTAACT GAGACCCTCA ACATCTTCTT CCATACACAG 31939 .......... .......... .......... .......... .......... .......... 124 CCCAATAACC AAAGTTATTC TATGCTTTCT TCATATTCTA TTGAATATAT TTACCATACA 31879 .......... .......... .......... .......... .......... .......... 124 ATTGCATTTT TTTCACCCTC TACCCTGCAT CGAAAGTTCT CCTATGGCTC TTTACATGTT 31819 .......... .......... .......... .......... .......... .......... 124 AGGACTAGGA ATCTTGATCT GGTTTTTGAA ATCAAATTGA ACGATACGAG AAGGTACCTT 31759 .......... .......... .......... .......... .......... .......... 124 TGTTTTGTAG TTTGCACATA TCGAGAATGT TACTACTTAA TGCCTAGAAA TATTGGGATA 31699 .......... .......... .......... .......... .......... .......... 124 GACCAAGTTG CCTGTGGCAT CGATCAGGCG GAATGATTAA TCAAAACATC AGAAAATCAT 31639 .......... .......... .......... .......... .......... .......... 124 TATTTTTACT TAAAATCCCA AAAACAATTC TCTTTTAAAC CAATTCTGCA CACTCAAAAC 31579 .......... .......... .......... .......... .......... .......... 124 GCTCAAAAAA AATATACAAT TTAAACACTA AAAATACACT CCTGAAACCT GATTAATGCT 31519 .......... .......... .......... .......... .......... .......... 124 CCCTTCAACT GCTTCTTTCT CCCACCTGCT CATGACAGTG TCAAGTGTCA ACCAAAAGAT 31459 .......... .......... .......... .......... .......... .......... 124 ATATATTTCT CTTTGAACTT AATGTATGTT TGATACGATA AAAGTCATTT TCGAGGAAAT 31399 .......... .......... .......... .......... .......... .......... 124 ATTTGTATTA TGCTCACCAA AAATAGTTTC ATAACAAAAG AGTGAGTCAT TTTACATAGA 31339 .......... .......... .......... .......... .......... .......... 124 AGTGGTCATT GTGGATTGAG ATATATTACC TCTACGGTTA CGAAACAGGC CAAAAATGAG 31279 .......... .......... .......... .......... .......... .......... 124 TTATCCCCAC ATCTTGCATT CTCTTGGGAA TATGATATAG ATGTGGACAG TATTTGATGT 31219 .......... .......... .......... .......... .......... .......... 124 CAAGACCTTT AATATGAGGC ATGGCACTTG TGGCTAAATG CCATGTTTCT AGCATCTCAA 31159 .......... .......... .......... .......... .......... .......... 124 GACGATGAAG ACGGAGGAAC TCAAGTTGAC TGAAGCTGTT ATCACTGCAC GTTATTTCTT 31099 .......... .......... .......... .......... .......... .......... 124 TTCCTTCATA AGCTTCTTCT AATTCGAGAT TCCTTAGGTT TGGCAACATT CCCAAAATAG 31039 .......... .......... .......... .......... .......... .......... 124 GCATCGGATC TACCCTGAGT TTTGACTTCC AAAGAACCAT CATTGTGATG GAATTTGGAA 30979 .......... .......... .......... .......... .......... .......... 124 ACAGAGGAAG TTTCTTTATT GTCCCTCTTA ACCTCAATTT CTGGAGCTTT TGACAAGAAT 30919 .......... .......... .......... .......... .......... .......... 124 TGACAAATTC AAGAGATGGG AATGATTCAT CAGCATAACA CAATAATCTG AGAGTGCTAA 30859 .......... .......... .......... .......... .......... .......... 124 GGTTTTTCAA GCTGCTAATG TTGTATAGGG AGTAAGATTC GGTAATATCA TGCATGCTTA 30799 .......... .......... .......... .......... .......... .......... 124 GTTCACGAAG ATTGACTAAA TCAACAGGGT CAACATCTTT CCACTGATCA CAACGAATGC 30739 .......... .......... .......... .......... .......... .......... 124 CTTTAAGAAC TTGAAGACTC GTGAGTTTGT TTATACATTT CAGAGGCTCT GAATATGGAG 30679 .......... .......... .......... .......... .......... .......... 124 CAACTAAATG TCTTAGATTT ATTAGGTCAA CTGTCTTTTG GGATAGACGG CTAAACCCTC 30619 .......... .......... .......... .......... .......... .......... 124 CATGGTCATC GACAAGAAGT GTCTGTAAAT TCTTGAGGTT GCTAATGGAA GAGGGAATAT 30559 .......... .......... .......... .......... .......... .......... 124 TACAGACACC TCTCAAGCTT AACAACTTGA GGTAGTACAA ACTTCCTATG ACATCAGACA 30499 .......... .......... .......... .......... .......... .......... 124 TAACATAACC TCCAATATCC AAGTACAACA CGTATATATG TCGGAACACA CTACTGAAGT 30439 .......... .......... .......... .......... .......... .......... 124 TTGTAAGATG GATGTTACGA AAATCTGGAT CGAAGAACAT AATTGACCTC AACTTCAAGT 30379 .......... .......... .......... .......... .......... .......... 124 GAGAAAGATC AAGTGAGAGG TACCTTTCTC CTTGACCATG AATGACATGT CTGATGCATA 30319 .......... .......... .......... .......... .......... .......... 124 AGGAGGATAT GGAGTGCTTT TTTGGATCAT AAATGTCAAA GAATTTTATA TCGAATGCCT 30259 .......... .......... .......... .......... .......... .......... 124 TTTGTACGGC AAGATCACGA AGTAAATCAT GAACCTTACA CACAGTAACC TTTTCCCAAA 30199 .......... .......... .......... .......... .......... .......... 124 AGGAACGTAC CTCTTGTATC AAACTTCGTC TTATCAGCTC ATTCAAGAAT CCTTCAGCGA 30139 .......... .......... .......... .......... .......... .......... 124 CATCCTCCAT TCTTTCTTCT CCATTTGGTA TGAGACCCTC GGCCATCCAC AACAGTATTA 30079 .......... .......... .......... .......... .......... .......... 124 TCTTTTCAGC GTCGACCTCT TGATCTTCTG GGAAAACACC AAAGTACAGA AAACACTGCT 30019 .......... .......... .......... .......... .......... .......... 124 TGAGTGTAGT TGACAAATCG TTGTAGCTCA ATGATAGTAT GTAGGAGATT TGAATGGAGT 29959 | .......... .......... .......... .......... .......... .........T 125 CATCTTGAAT GTTCTGCCAA AAGTGATCTT TCACTTTTTG CCATTGGTCT AGCCCCCTTT 29899 | |||| ||| | ||| |||| | |||||||| |||| ||||| ||||| ||| || || ||| CTTCTTTAAT GCTCTTCCAA AGGTGATCTT TCACCTTTTG CCATTCATCT AGATCCTTTT 185 TATGTGAAAG TAGTCCGCTC AATACAACAA TTGCAAGAGG TAAGCCTCTA CACTTTTCCA 29839 |||| ||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TATGCGAAAG TAGTCCGCTC AATACAACAA TTGCAAGAGG TAAACCTCTA CACTTTTCCA 245 CCATATCTTT AGCTATCCTT ACCATTTCTG GAACCATTGC CCGAACATCA AGTTGTTTCC 29779 ||||||| || ||||| ||| ||||||||| ||||||||| ||||||||| ||| |||||| CCATATCCTT AGCTAGACTT TCCATTTCTG CAACCATTGC TCGAACATCA AGTAGTTTCC 305 TACAAAAGAG GTCCCAACTT TCTTTTTGGC TTAGGAAACG AAGGTTATGG ACAAAACCTC 29719 || |||||| ||||||||| |||| ||| | |||||||||| ||| ||||| |||||||||| TAAGAAAGAG ATCCCAACTT TCTTCTTGAC TTAGGAAACG AAGTTTATGA ACAAAACCTC 365 TGTTGTCAGC TCTTTCCGCA ACATCATGTT TCCGCGTGGT AATAATAACT CTGCTGCCCT 29659 ||| | | || |||||| || | ||| | || | |||||||| |||||| ||| |||||||| | TGTCGGCTGC TCTTTCAGCG ATATCCTCTT TGCGCGTGGT AATAATGACT CTGCTGCCAT 425 TCTTGCTATC TGGGAATGCT CTTTTCAAAC TCTCCCATGC TTCTCTCTGC CATACATCAT 29599 ||||| ||| ||||||||| |||||||||| | |||||||| |||||| ||| |||| ||||| TCTTGTCATC CGGGAATGCT CTTTTCAAAC TTTCCCATGC TTCTCTTTGC CATATATCAT 485 CAACCACTAC AAGGTATTTG CCTTCTTTCA ATAGATCACG AAGGTAAATT TCTAGATCGC 29539 |||||||||| |||||||||| | |||||||| ||||||||| ||||| | || |||||||| | CAACCACTAC AAGGTATTTG CGTTCTTTCA GTAGATCACG AAGGTGATTT TCTAGATCTC 545 TTTCTGTCAT CCTTTCCAAG AAATCTAGAG TTCCCTTAGT GCGACCTTGG ATGGATTTTA 29479 |||| ||| | ||||||| || |||||| ||||| | || || ||||||| |||||||||| TTTCATCCAT CTTTTCCAAC AATCCTAGAG TTCCCATGGT GCAACCTTGG ATGGATTTTA 605 TGATATTCTT AAGAAGATCC ATTGTGTTGT ACTCTTGAGA AACACATATC CAAGCGCGTG 29419 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TGATAGTCTT AAGAAGATCC ATTGTGTTGT ACTCTTGAGA AACACATATC CAAGCACGTG 665 TAGGGAAGCT TGACACTATA TTAGGATTGT TGTAGAGGTT TCTTGCAAGA GTGGTCTT 29361 |||| || | |||||| |||| | |||||||||| |||||||||| |||||||| TAGGCCAGGT ATTGACTATA CGAGGACTTC TGTAGAGGTT TCTTGCAAGA GTGGTCTT 723 hqPGS_C04HBa0127E11.1-_SGN-U326781+ (34938 34824,33923 33918,29959 29361) ******************************************************************************** EST sequence 46 +strand 921 n (File: SGN-U341206+) 1 ATAGCTGGAG CTCCCCGCGG TGGCGGCCGC TCTAGAACTA GTGGATCCCC CGGGCTGCAG 61 GCCACAAGGA AGGCAAATAC CTTATGCTTG CTGTTCAGGA ACTGGTTTCA GGAGATCAGT 121 CTGAGGGCAG GTTTGTGTTT GGTCGTGAAA ACAAGAAGCC TAAAGATTCT GACGCTGATA 181 GATTTACAAG GGACGGGACA AACCCAAAGA GTTTGTTGCA GACGCTACTT ATGAGGGCGG 241 GTCACTCCCC TCCCAAGTAC AAAACAAAGC ATCTAAAAAC AAATGAATTT AGGGCACTTG 301 CAGAGTTCAA GGGAATGCAA TTTGTAGGTA AACCAAAGAG AAACAAAGCC CTTGCAGAAA 361 AGGATGCTGC AATAGAAGCA CTAGCATGGT TAACTCAAAC ATCTGACAAG AATCATGGTG 421 AAGATGATAA ATCTCCTCCT GATGTCACCG ATAACATGCT GAAGCTTCTT GGTAAACGCA 481 GGAGATCAAA GCGTCGCTGA GGTGATAAGA CTAATTGATT GTAGGCATAA TACATAAATA 541 TGCCCTTTAA CTTGGCTTCG AATTACATTT ATGACCTTCA ACTTTGGATT TGCACAAGTA 601 GACACTTAAA TTTGTATAAA GTTGAACAAA TAGACACACA TGTCCTATAT GTCATTTTTT 661 TTATCCTANN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 721 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNAACCTCGA GGGGGGGCCC CGGAACCCAT 781 TCCCCCCTAA GGGGGCCCAT TAACATTCCC TGGGCGCGCT TTTACAACGT CGGGACGGGA 841 AAAACCTGGG GGTTACCCAT TTATTCCCTT TGAACAAATC CCCCTTTTCC CAAGTGGGGG 901 AATACCAAAA AGGCCCCCCC G Predicted gene structure (within gDNA segment 39040 to 29146): Exon 1 38309 38273 ( 37 n); cDNA 336 370 ( 35 n); score: 0.568 Intron 1 38272 36808 (1465 n); Pd: 0.853 (s: 0), Pa: 0.948 (s: 0) Exon 2 36807 36776 ( 32 n); cDNA 371 400 ( 30 n); score: 0.594 Intron 2 36775 35654 (1122 n); Pd: 0.512 (s: 0), Pa: 0.279 (s: 0) Exon 3 35653 35635 ( 19 n); cDNA 401 420 ( 20 n); score: 0.553 Intron 3 35634 33924 (1711 n); Pd: 0.000 (s: 0), Pa: 0.981 (s: 0) Exon 4 33923 33918 ( 6 n); cDNA 421 426 ( 6 n); score: 0.667 Intron 4 33917 33883 ( 35 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.64) Exon 5 33882 33841 ( 42 n); cDNA 427 466 ( 40 n); score: 0.643 Intron 5 33840 33180 ( 661 n); Pd: 0.839 (s: 0.64), Pa: 0.243 (s: 0.52) Exon 6 33179 33117 ( 63 n); cDNA 467 522 ( 56 n); score: 0.556 Intron 6 33116 32621 ( 496 n); Pd: 0.354 (s: 0.54), Pa: 0.000 (s: 0.94) Exon 7 32620 32478 ( 143 n); cDNA 523 665 ( 143 n); score: 0.909 MATCH C04HBa0127E11.1- SGN-U341206+ 0.801 342 0.371 C PGS_C04HBa0127E11.1-_SGN-U341206+ (38309 38273,36807 36776,35653 35635,33923 33918,33882 33841,33179 33117,32620 32478) Alignment (genomic DNA sequence = upper lines): AAGGCAAGCA GTTCCATTGT CTTAAAAGGA CAAAGATGCA AGCTATGCGA AAGGTACATT 38250 ||| || || || ||| | ||||||| | AAGAGAAACA AAGCCCTTG- CAGAAAAGGA TGCTG-C... .......... .......... 370 TCAATAGAAG AATCTTCTTA TTCTAACCAG TCAAATTCTT TCTACACCAA TTGATATTAT 38190 .......... .......... .......... .......... .......... .......... 370 CTATAAAAAT TGTTTGATGA TGGAGTTGAA GCATATGGTG AAGCGATCAC ATAAATTGTC 38130 .......... .......... .......... .......... .......... .......... 370 GTGCAGGATG TTACGTGGAA TGCGTTTGTA TATTTGTTCG TACATTCTAA GTTGAAGGGC 38070 .......... .......... .......... .......... .......... .......... 370 ATAAATTTGA AATTAGGTCA AGTTAAATGA CACACTTAAA AGAAGCCAAA AACAAAAAAA 38010 .......... .......... .......... .......... .......... .......... 370 GAAATTAAAC ATTGAAAAAC TAAAACAACA AAAAAAAAGT TGAAATAATG AGTAAAGTGA 37950 .......... .......... .......... .......... .......... .......... 370 CAGAAACTTG ATTGATGCTT TCTTGAAGTG GTGGGCAATC ATGATAATGA AAGGCAACAG 37890 .......... .......... .......... .......... .......... .......... 370 GAAATGAAAG CTCCTATTAT CAACAAGGAC GATAAAGATG CAAGCTAAGT GAAAGGCACT 37830 .......... .......... .......... .......... .......... .......... 370 TTTTTTTTTT TTTTTTGAAA TGGTAAAGAG TAAGTACCAT TAGGATATTA TCAGTTGGAA 37770 .......... .......... .......... .......... .......... .......... 370 ATAGTCATTG GCGTTATCGG TTTAGAATAT AATGAAGTAA AGAAAATACA GGCTTAAGTC 37710 .......... .......... .......... .......... .......... .......... 370 ACCTTCTGTC CTTTAAAGTT ATCAGCATAA TTCACTTATC TAGACGACTC AACTAGGACT 37650 .......... .......... .......... .......... .......... .......... 370 ATAGTATGTA CGGAACACCA CTCTTCCTCA ACATTTGAGC CATTGAAATA CTTTTTGCCC 37590 .......... .......... .......... .......... .......... .......... 370 ATACGAGACT TTATCTATGA TTCACTTCAG ATGGACGCGT GAATGCAATT TTTGCAGCTT 37530 .......... .......... .......... .......... .......... .......... 370 ATGTAGTTCA ATGTTAATAG TATTTTCCTC CGCATCCTTG AGGAATCTGC TTATCTCTCA 37470 .......... .......... .......... .......... .......... .......... 370 ACCATCGGAC ATCCTCTCTT CGACTTAAAA TGCATGTTAA CTTCCTGTAT AAGGAAATTG 37410 .......... .......... .......... .......... .......... .......... 370 CCTAGATTTT GTGCTGCAAA TGACACAAAG GCATCCGCCA TTTTCAGGCG TTTCGGTTTT 37350 .......... .......... .......... .......... .......... .......... 370 TAAAGGTTTC TGCTAATTGC TCCCAGAAAG AATCATGACT GTATGCTGAA TTTCAGTGAA 37290 .......... .......... .......... .......... .......... .......... 370 GTGATGATTT CTTGGTTTTT TTTGCTTTAA AGTTTTTGTT TAGTTTCCTT CACAGGTATT 37230 .......... .......... .......... .......... .......... .......... 370 AACGGCTGCT TTGTTTAATT TCTGCTCGTT TCACATTTAT GTCCTCCAAC TTTGAGTGTA 37170 .......... .......... .......... .......... .......... .......... 370 CAATTTGCGT CCTACATGAC AGTTTGCGTC CTACGTGGTG TCTTATGTGT ATTATGACAT 37110 .......... .......... .......... .......... .......... .......... 370 ATAAGACTTA TGTGTCAATT TGTTTAACTT TATACAAGTT TAAATGTTTA CTTGTGCACA 37050 .......... .......... .......... .......... .......... .......... 370 TCCAATGTTG AAAGTCATAA ATTTGAAATT AGGTCAAGTT AAATGACACA ATTATTGCCT 36990 .......... .......... .......... .......... .......... .......... 370 TGAGATAGCG TGCATTGAGA TTTGATGTTG CTTGAATTTT ATGAACCAAA ATCTGTACTT 36930 .......... .......... .......... .......... .......... .......... 370 TGTCAACTGC CTTTTGTGAA AATCTGATGT GTGTCATCCT CTGACTTTCG GTTTCGTTAC 36870 .......... .......... .......... .......... .......... .......... 370 TCTGTAGGTG ATATTTGGTG TTGTTTCTGT CATTGACGAT GCAATGTGAT CTTAATTACT 36810 .......... .......... .......... .......... .......... .......... 370 AGAATGGAAT GAATGTGTCA GCGTTTAAGC AGACGTAAGA AGGCATCATC TGCCATTCAT 36750 ||| ||| | | | || ||| | | | || ..AATAGAA- GCACTAG-CA TGGTTAACTC AAAC...... .......... .......... 400 GATGCAGTGA TTGGATTATT TTGGTACGTA TTGCATCTCT ACTTTTGCAT TAAAAGTCGA 36690 .......... .......... .......... .......... .......... .......... 400 GTCTTTTGTA GTTTACAGGA TCTGTTCTAA AACAGAAAGA ACGAGGCATC GGATTTTTGA 36630 .......... .......... .......... .......... .......... .......... 400 GCTTGTGTGT ACAGAATCAG AAAACCCAAA AATTAGGTAC TAAAGCTAGT TAGATGAATG 36570 .......... .......... .......... .......... .......... .......... 400 AACTCCTTCG CTATGCCATC ATGAAGAGAA AATGATCAAA ATGCTCCTTG ATAAATGAGC 36510 .......... .......... .......... .......... .......... .......... 400 TTTGGTTCAT TTAGTCAATA CATGGCCTAC TTAGGCCTCG AAACAGGGTA GAGACAATGC 36450 .......... .......... .......... .......... .......... .......... 400 AAATCCTATA ATGCTTTGTG CAAAAATCCA TCTAAAGCTC ACAATCAGTA GCTGGATGAA 36390 .......... .......... .......... .......... .......... .......... 400 AGTACACAGC ATACTTTTCA TTCTTTTTTT TGAATCTGAT GCAACTTCAA ACACTCATGT 36330 .......... .......... .......... .......... .......... .......... 400 CGACCTAAAC CTTTAATAAC AGGCATGGGA CTTGTAGCTG AATGCCAACT CTCAATGTAT 36270 .......... .......... .......... .......... .......... .......... 400 CGAAGATCAA CAAAGACGAA CAAACTCCAA CTGACAAAAA ATGTCTTCAA GTGACAGCTT 36210 .......... .......... .......... .......... .......... .......... 400 CCTCGCCTGT TTAACCGAAA TATTATTAAC ACACTATTTA TGAAATAAGA CTTCATGTAT 36150 .......... .......... .......... .......... .......... .......... 400 GCTTGAAAAG CTTCGCGTCT TTCATTCTCT GGGGAATCTT GTTCAGCTTT TTACAGTGAT 36090 .......... .......... .......... .......... .......... .......... 400 CAATACGAAG ACCTTTAATC AGAGGCATGG CACTTGTGGC TAAATGTCAT GTGTCTAGGT 36030 .......... .......... .......... .......... .......... .......... 400 TCTCAAGACA AGCAAGACTA AGGAACTCGA GTTGAGGGAA GCTATTATCA CTGCAGAATA 35970 .......... .......... .......... .......... .......... .......... 400 TTTCTTTTCC TTGATAAGCT CTAAGAACTT CGAGTTTTCT TAGGTTTGGC AACATTCCCA 35910 .......... .......... .......... .......... .......... .......... 400 AAATAGGCAT CGGATCTTCC ATGAGTTTTG AGTCCAAAAG AACCATCATT GTGATGGAAT 35850 .......... .......... .......... .......... .......... .......... 400 TTGGTAACAG AGACAGTTTC TGTATTCTCC CATCTAACCA CAATTTCTGA AGCTTTTCAC 35790 .......... .......... .......... .......... .......... .......... 400 AATAATAAAG AAATTCAAGG TCTGGGAATG ATTGACCATC TCTACAAAAC AATTTGAGAG 35730 .......... .......... .......... .......... .......... .......... 400 TGCTAAGGTT TTTCAAGCTG CTAATGTTGT TTAGGGAGTA AGATTTGGTT ATATCAATCA 35670 .......... .......... .......... .......... .......... .......... 400 TGCTTAATTC TCGAAGAT-T GACTAAAATC AACAGGGTCA ACATCTTTCC ACTGATCACA 35611 || | ||| | |||| | | .......... ......ATCT GACAAGAATC ATGGTG.... .......... .......... 420 AGAGATGTCT TTAAGAATTT GAAGACTAGT GAGTTTACTT ATACGTACCA GAGGTTCAGA 35551 .......... .......... .......... .......... .......... .......... 420 ATACGGAGCA ACTAAATGCC TTAGATTTAT TAGGTCAGCT GTCTCGGGGG GTAGTTGGCA 35491 .......... .......... .......... .......... .......... .......... 420 CAAATGTCTA AATTCACTTT TGACACAAAG TGTCTGCAAA TTCTTGAGGT TGCCAATGGA 35431 .......... .......... .......... .......... .......... .......... 420 GGAGGGAAGA TTACCAATAC CTCCCAAGCT TAAGAATTTG AGATGGTATA AACTTCCTAT 35371 .......... .......... .......... .......... .......... .......... 420 GGCATGAGGT ACAGTTCCAC CAAGAGTATC CAACTACAAC ACATATATAT GTTGGAACAC 35311 .......... .......... .......... .......... .......... .......... 420 ACTACAGAAG TTTATAAGAT TCATGTTCCG AAAATCTGGA TCGAAGAACA TAATTGACCT 35251 .......... .......... .......... .......... .......... .......... 420 CAACTTTAAG TTAGAAAGAT CAAGTGAGAG GTACTTTTCT CCTTGATCAT GAATGGCATG 35191 .......... .......... .......... .......... .......... .......... 420 CCTGATACAT AAGGAAGATA TGGAGTGGTT TCTTGGATCA TAAATGTCAA AGAAGTTTAC 35131 .......... .......... .......... .......... .......... .......... 420 CTCCAATGCC TTTTGTATGG CAAGATCACG AAGTAAATCA TGAACCTTAC ATTCAGAAAC 35071 .......... .......... .......... .......... .......... .......... 420 TTTTTCCCAA AATGTTCGAG CCACTTGAAC CAAGCTTCGT CTTATTAGCT CATTCAAGAA 35011 .......... .......... .......... .......... .......... .......... 420 GCCTTCAGCT ACATCCTCCA TTCTTTCTTG TCCTCTTGGT ATGAAACCCT CAGCCATCCA 34951 .......... .......... .......... .......... .......... .......... 420 CAGCCGTATT ACGTTTTCAG CCTCGAGCTC TTGATCTTCT GGAAAAATAC CGAAGTAGAG 34891 .......... .......... .......... .......... .......... .......... 420 AAAACACTGC TTGAGCTCAG TTGACAAATC ATTGTAGCTT AATGATAGTA TGTAGGAGAT 34831 .......... .......... .......... .......... .......... .......... 420 TTCAATAGAG TCTTCTTCAA TGTTCTTCCA AAGGCGGTCT TTCACCTTTT TCCATTCGCC 34771 .......... .......... .......... .......... .......... .......... 420 TGGCCCCCTT TTATGCGAAA GTAGTCCGCT CAATACAACA ATTGCAAGAG GTAAGCCTCC 34711 .......... .......... .......... .......... .......... .......... 420 ACACTTATCC ACCATATCCT TAGCTAGCCT CTCCATTGTG GAGGTCATTG CTCGAACATC 34651 .......... .......... .......... .......... .......... .......... 420 AAGTAGTTTC CTGCAAAAGA GATCCCAACT TTCTTCTTGG TTTAGGAAAC GAAGTTTATG 34591 .......... .......... .......... .......... .......... .......... 420 GACGAAACCT CTGTTGTATG CTCTTTCAGC AACATCTTGC TTGCGCGTGG TGATAATAAC 34531 .......... .......... .......... .......... .......... .......... 420 TCTGCTGCCA TTCTTGCTAT CCGGAAATGC TCTTTTCAAA CTCTCTCATG CTTCTCTCTG 34471 .......... .......... .......... .......... .......... .......... 420 CCATATATCA TCAACCACCA CAAGGTATTT GCGTTTTTTT AAAAGATTAC GAAGGTAAAT 34411 .......... .......... .......... .......... .......... .......... 420 TTCTAGATCT CTCTCTGTCA TCCTTTCCAA CAAATCTAGA GTTTCCTTGG TGCAACCTTG 34351 .......... .......... .......... .......... .......... .......... 420 GATGGATTTT ATGATATACC TGAGGAGATC CACAGTGTTG TACTCTTGAG AAACACATAT 34291 .......... .......... .......... .......... .......... .......... 420 CCAAGCTCGT GTATGGAAGC TATTGACTAT ATCAGGACTG ATGTAGAGAT TTCTTGCAAG 34231 .......... .......... .......... .......... .......... .......... 420 AGTGGTCTTG CCTAAACCAC CCATGCCATA AATGGAGATG ACGCTTCGAC GAGGCTCTTC 34171 .......... .......... .......... .......... .......... .......... 420 TTTGAGAAGT TCAGATAGCA ATCTTTCTAC AACATCCTGA AATCCAACAA AAATGTGATC 34111 .......... .......... .......... .......... .......... .......... 420 CTGACCATCC ACATAGGAGG TGGTTCTCCT CAATGTTGTA ACCATGGCAG ATGGATTGTT 34051 .......... .......... .......... .......... .......... .......... 420 TGGCCGCTTA CTTGATCCAT CTCCTGAATT AGTACTATTG ATATTTGTAA TACCATAAGT 33991 .......... .......... .......... .......... .......... .......... 420 CTCTCGCTTG CGAGAGATAT CCATAATTCG TTGCTTGAGT GATTGTATCT CTTTGGATAC 33931 .......... .......... .......... .......... .......... .......... 420 TTTGTAGAAT TTGGTGTCCT TCTTACAGAT GCAAGCGCAA CCCTTGAGAC AACTAGCAAA 33871 || || | || | | .......AAG ATG....... .......... .......... ........AT AAATCTCCTC 438 TTGATCGTCA CCTTTACCAG CCTTGAAGCT GTAAGTCTCT AGTATAGCGA CAGCGTCATT 33811 |||| |||| || || || | ||||||| CTGAT-GTCA CCGATAACAT GC-TGAAGCT .......... .......... .......... 466 TGCAATAGAG TTGATCTCAA ACACCCATTG TTGAACTCTT TGATCTCCAC ATTGCTTTAG 33751 .......... .......... .......... .......... .......... .......... 466 TTCTGCATCT CTGAGGAAAG ACTGCATGAA GAGTAGATCA TTTCTCAGCC ATCTAACTTC 33691 .......... .......... .......... .......... .......... .......... 466 ATCTCTGAGA TTTGTAAGCA GGGAAACTTC CTGAATGAGG AAATCACCCA GTTTTTTAAC 33631 .......... .......... .......... .......... .......... .......... 466 TGCAAATGAC ACAAAGGCAT CAGCCATCTT CAGGAGTATT GATTTTTATC TGGAGAAATG 33571 .......... .......... .......... .......... .......... .......... 466 GGGTCTGTAT ATTGGAATAC TAGTCAGAAA TGAGAGATAG AGATATACAC TCAAAAACAG 33511 .......... .......... .......... .......... .......... .......... 466 TTGACATTAA TACTGATTAA AAGTTGAGTA AAAACGAAAG AAATAATACA TAAACATGAC 33451 .......... .......... .......... .......... .......... .......... 466 CCTTAACTTG GCTTCAGCCG ACAACAATGA CCTTTAACTT TGGGTGTGCA CAATTAGACA 33391 .......... .......... .......... .......... .......... .......... 466 CTTAAAAAAT TATATATAAT TGAAGAAAAG ACATATTCCT CTATGTACTA GACCCTTAAG 33331 .......... .......... .......... .......... .......... .......... 466 AGTTATGTTT ATATACTATG CTTTTTTTGA AATATGTATT AAAGCTTCTT TAACTACCAT 33271 .......... .......... .......... .......... .......... .......... 466 TACACAACTT GTGGGAAAAT TTATGTGTGG AGAAAAGTCT AAAAAGTAAA TAATTATAAA 33211 .......... .......... .......... .......... .......... .......... 466 AGAATTATGA TTGTCAAATA TGTCAAACAA GAATGTGGAA AATGAACAAG AAAAAATTAG 33151 | ||| | || | | || | ||| | .......... .......... .......... .TCT-TGGTA AACGCAGGAG ATCAAA-GCG 493 AGAAATGAAA GTGAAATGTG ACTCATTTGA CTGGGCAAGA GAAAATCAAA GTGTTCCCAT 33091 || | ||| || | ||| | |||| || -TCGCTG-AG GTG--ATAAG ACT-AATTGA TTGT...... .......... .......... 522 TTGAAAAAAT TAGAGTAATG AAACTATATA TGGAGGAAAA GTCTATCAGT AGTAGTTCTG 33031 .......... .......... .......... .......... .......... .......... 522 TGTTGTCCAA TTCAATGGTC CACCTTATAA ATTTATTTGG GTATGATTAT GAAGAGGCTG 32971 .......... .......... .......... .......... .......... .......... 522 AAATAGGACA TCGATATATA TATATATATA TATATATATA GCTTCATCGA AAAGGAGTTC 32911 .......... .......... .......... .......... .......... .......... 522 TCTCCACGTC TTTCATTCTC TCGGGTATCT CTTTTAGCTT TGGACATTGA TGGATAGCAA 32851 .......... .......... .......... .......... .......... .......... 522 AACCTTTAAT ATGAGGCGTG GCACTTGCGG GCTAAATGCC ATTTCCCTAA GTTCTCAAGA 32791 .......... .......... .......... .......... .......... .......... 522 CGAAGGATCT CCAGTTGACT GAAGTTGTTA TCAATGCATG TAATTTCTTT TCCTTCATAA 32731 .......... .......... .......... .......... .......... .......... 522 GCTCTAAAAA AGTTCAAGAT TCCTTAGGTT TGGCAACATT CCCAAAATAG GCATCGGATC 32671 .......... .......... .......... .......... .......... .......... 522 TTCTGTGAGT TTTTGAGTCC GAAAGAACCA TCATTACGAT GGAATTTGGA AGGCATAATA 32611 |||||||||| .......... .......... .......... .......... .......... AGGCATAATA 532 CATAAATATG CCCTTTAACT TGACTTCAAA TCACATTTAT GCCCTTCAAC TTTGGATGTG 32551 |||||||||| |||||||||| || |||| || | |||||||| | |||||||| ||||||| || CATAAATATG CCCTTTAACT TGGCTTCGAA TTACATTTAT GACCTTCAAC TTTGGATTTG 592 CACAAGTAGA CACTTAAACT TGTATAAAGT TGAACAAACA GACACACATG TCCTACATGT 32491 |||||||||| |||||||| | |||||||||| |||||||| | |||||||||| ||||| |||| CACAAGTAGA CACTTAAATT TGTATAAAGT TGAACAAATA GACACACATG TCCTATATGT 652 CATCCTACTT GTC 32478 ||| | || || CATTTTTTTT ATC 665 hqPGS_C04HBa0127E11.1-_SGN-U341206+ (32620 32478) ******************************************************************************** EST sequence 12 -strand 813 n (File: SGN-U345486-) 1 GAATATAAGG CTTTAAAAAC GGGTTTCGGC AAAATAGTCT TCCCAAANGG CCCAAGCATA 61 ACGGAAGGGC CCTTTCTGGA AGGTTTTCTC TGAGTAGTCA GCTAGAATGT TTGCACACAT 121 CCTTAAATCC CAAAAATATG TAATCCTGGT CATCAAATAT GAGGTAGTTC TCCTCAAAGT 181 TCTACCTGAT TACGGGCCCT TCTCCTGTAT TAGTATTGAT ATTTGTAATG TCATATGTCT 241 CTCGCTCGCG AGAGATATCC ATGATTCGTT GCTTGACGTG ATTGAATCTC CTCATTGACG 301 TTGTAGAATT TAGTCTCCTT CCTACAAATG CTAGCGCAAG CCTTGAGACG ACTAGCAAAT 361 CCGTCATCAT CCCCTTTATC AGCCTCAAAG TTATAAGTCT TCAGTATAGC CACAGCATCG 421 TTAGCAATAC AGTTGATCTC AAACACCCAT TGTTGAAATC TTTGATCTCC ACATTGTTTT 481 AGTTCTGCAT CTCTGAGGAA AGGCTGTATG AAAAGTAGCT CATTTCTCAG CCACTCATCT 541 TCCTTTGTCA GATTTGTTCT CAAGGAAACT TGTTGTATGA GGAAATCACC CAATTTTTGA 601 ACTGTAAATG ACATAAAGGC ATCAGCCATC TTCAGGATTG TTGTTCTTTT TTTATAAAAA 661 AAATTGTGGA ATACAAGTTC GCAAATGGGA GATAGAGATC ATACACATTC AGAAGCTGTA 721 GCCTCGTGCC GAATTCCTGC AGCCCGGGGG ATCCACTAGT TCTAGAGCGG CCGCCACCGC 781 GGTGGAGCTC CAGCATGAGN ATCGTANTTA AAA Predicted gene structure (within gDNA segment 38712 to 30021): Exon 1 34262 34074 ( 189 n); cDNA 3 181 ( 179 n); score: 0.704 Intron 1 34073 34044 ( 30 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0.48) ?? Exon 2 34043 33596 ( 448 n); cDNA 182 637 ( 456 n); score: 0.795 Intron 2 33595 31809 (1787 n); Pd: 0.349 (s: 0.92), Pa: 0.000 (s: 0.65) Exon 3 31808 31769 ( 40 n); cDNA 638 677 ( 40 n); score: 0.650 MATCH C04HBa0127E11.1- SGN-U345486- 0.768 677 0.833 C PGS_C04HBa0127E11.1-_SGN-U345486- (34262 34074,34043 33596,31808 31769) Alignment (genomic DNA sequence = upper lines): ATATCAGGAC TGATGTAGAG ATTTCTTGCA AGAGTGGTCT TGCCTAAACC ACCCATGCCA 34203 |||| ||| | | | | |||| ||| | | | |||| | || ||| |||| | || ATATAAGGCT TTAAAAACGG GTTTC-GGCA A-AATAGTCT T-CCCAAANG GCCCAAG-CA 58 TAAATGGAGA TGACGCTTCG ACGAGGCTCT TCTTTGAGAA GTTCAGATAG CAATCTTTCT 34143 | || ||| | | | ||| || | | | ||| |||| | | |||| ||| ||| ||| T-AACGGA-A GGGCCCTTTC TGGAAGGTTT TCTCTGAGTA G-TCAGCTAG -AATGTTTGC 114 ACAACATCCT GAAATCCAAC AAAAATGTGA TCCTGACCAT CCACATAGGA GGTGGTTCTC 34083 || ||||||| |||||| | ||| |||| | ||||| ||| | | ||| || ||| |||||| AC-ACATCCT TAAATCCCAA AAATATGTAA TCCTGGTCAT C-AAATATGA GGTAGTTCTC 172 CTCAATGTTG TAACCATGGC AGATGGATTG TTTGGCCGCT TACTTGA-T- C--CATCTCC 34027 ||||| ||| ||| ||| | | || | CTCAAAGTT. .......... .......... .........C TACCTGATTA CGGGCCCTTC 202 TGAATTAGTA CTATTGATAT TTGTAATACC ATAAGTCTCT CGCTTGCGAG AGATATCCAT 33967 | || || ||||||||| ||||||| | ||| |||||| |||| ||||| |||||||||| TCCTGTATTA GTATTGATAT TTGTAATGTC ATATGTCTCT CGCTCGCGAG AGATATCCAT 262 AATTCGTTGC TTGA-GTGAT TGTATCTCTT TGGATACTTT GTAGAATTTG GTGTCCTTCT 33908 ||||||||| |||| ||||| || ||||| | || || ||||||||| || |||||| GATTCGTTGC TTGACGTGAT TGAATCTCCT CATTGACGTT GTAGAATTTA GTCTCCTTCC 322 TACAGATGCA AGCGCAACCC TTGAGACAAC TAGCAAAT-- -TGATCGTCA CCTTTACCAG 33851 |||| |||| ||||||| || ||||||| || |||||||| | ||| || |||||| ||| TACAAATGCT AGCGCAAGCC TTGAGACGAC TAGCAAATCC GTCATCATCC CCTTTATCAG 382 CCTTGAAGCT GTAAGTCTCT AGTATAGCGA CAGCGTCATT TGCAATAGAG TTGATCTCAA 33791 ||| ||| | ||||||| |||||||| | |||| || || |||||| || |||||||||| CCTCAAAGTT ATAAGTCTTC AGTATAGCCA CAGCATCGTT AGCAATACAG TTGATCTCAA 442 ACACCCATTG TTGAACTCTT TGATCTCCAC ATTGCTTTAG TTCTGCATCT CTGAGGAAAG 33731 |||||||||| ||||| |||| |||||||||| |||| ||||| |||||||||| |||||||||| ACACCCATTG TTGAAATCTT TGATCTCCAC ATTGTTTTAG TTCTGCATCT CTGAGGAAAG 502 ACTGCATGAA GAGTAGATCA TTTCTCAGCC ATCTAACTTC ATCTCTGAGA TTTGTAAGCA 33671 ||| ||||| ||||| ||| |||||||||| | | |||| | | | ||| ||||| || GCTGTATGAA AAGTAGCTCA TTTCTCAGCC ACTCATCTTC CTTTGTCAGA TTTGTTCTCA 562 GGGAAACTTC CTGAATGAGG AAATCACCCA GTTTTTTAAC TGCAAATGAC ACAAAGGCAT 33611 |||||||| || |||||| |||||||||| ||||| ||| || ||||||| | |||||||| AGGAAACTTG TTGTATGAGG AAATCACCCA ATTTTTGAAC TGTAAATGAC ATAAAGGCAT 622 CAGCCATCTT CAGGAGTATT GATTTTTATC TGGAGAAATG GGGTCTGTAT ATTGGAATAC 33551 |||||||||| ||||| CAGCCATCTT CAGGA..... .......... .......... .......... .......... 637 TAGTCAGAAA TGAGAGATAG AGATATACAC TCAAAAACAG TTGACATTAA TACTGATTAA 33491 .......... .......... .......... .......... .......... .......... 637 AAGTTGAGTA AAAACGAAAG AAATAATACA TAAACATGAC CCTTAACTTG GCTTCAGCCG 33431 .......... .......... .......... .......... .......... .......... 637 ACAACAATGA CCTTTAACTT TGGGTGTGCA CAATTAGACA CTTAAAAAAT TATATATAAT 33371 .......... .......... .......... .......... .......... .......... 637 TGAAGAAAAG ACATATTCCT CTATGTACTA GACCCTTAAG AGTTATGTTT ATATACTATG 33311 .......... .......... .......... .......... .......... .......... 637 CTTTTTTTGA AATATGTATT AAAGCTTCTT TAACTACCAT TACACAACTT GTGGGAAAAT 33251 .......... .......... .......... .......... .......... .......... 637 TTATGTGTGG AGAAAAGTCT AAAAAGTAAA TAATTATAAA AGAATTATGA TTGTCAAATA 33191 .......... .......... .......... .......... .......... .......... 637 TGTCAAACAA GAATGTGGAA AATGAACAAG AAAAAATTAG AGAAATGAAA GTGAAATGTG 33131 .......... .......... .......... .......... .......... .......... 637 ACTCATTTGA CTGGGCAAGA GAAAATCAAA GTGTTCCCAT TTGAAAAAAT TAGAGTAATG 33071 .......... .......... .......... .......... .......... .......... 637 AAACTATATA TGGAGGAAAA GTCTATCAGT AGTAGTTCTG TGTTGTCCAA TTCAATGGTC 33011 .......... .......... .......... .......... .......... .......... 637 CACCTTATAA ATTTATTTGG GTATGATTAT GAAGAGGCTG AAATAGGACA TCGATATATA 32951 .......... .......... .......... .......... .......... .......... 637 TATATATATA TATATATATA GCTTCATCGA AAAGGAGTTC TCTCCACGTC TTTCATTCTC 32891 .......... .......... .......... .......... .......... .......... 637 TCGGGTATCT CTTTTAGCTT TGGACATTGA TGGATAGCAA AACCTTTAAT ATGAGGCGTG 32831 .......... .......... .......... .......... .......... .......... 637 GCACTTGCGG GCTAAATGCC ATTTCCCTAA GTTCTCAAGA CGAAGGATCT CCAGTTGACT 32771 .......... .......... .......... .......... .......... .......... 637 GAAGTTGTTA TCAATGCATG TAATTTCTTT TCCTTCATAA GCTCTAAAAA AGTTCAAGAT 32711 .......... .......... .......... .......... .......... .......... 637 TCCTTAGGTT TGGCAACATT CCCAAAATAG GCATCGGATC TTCTGTGAGT TTTTGAGTCC 32651 .......... .......... .......... .......... .......... .......... 637 GAAAGAACCA TCATTACGAT GGAATTTGGA AGGCATAATA CATAAATATG CCCTTTAACT 32591 .......... .......... .......... .......... .......... .......... 637 TGACTTCAAA TCACATTTAT GCCCTTCAAC TTTGGATGTG CACAAGTAGA CACTTAAACT 32531 .......... .......... .......... .......... .......... .......... 637 TGTATAAAGT TGAACAAACA GACACACATG TCCTACATGT CATCCTACTT GTCATTTTTT 32471 .......... .......... .......... .......... .......... .......... 637 GTCCGACGTG GTGTTCTACG TGTATTGTGT CATGTAGGAC TCATGTGTTT ATTTATTTAA 32411 .......... .......... .......... .......... .......... .......... 637 AAGTTGGATA GTTAAAGTGT CTGTTTGTGC ATTATGAAAG TTGGAGGTCA AAGTTAAAAT 32351 .......... .......... .......... .......... .......... .......... 637 TTGAAGGCAA ATTTAGGGTC CAATATATGT ATTATGCTGG AAATTGGTCC GACAGAGGCA 32291 .......... .......... .......... .......... .......... .......... 637 GCTTCTCAAT TCTCCCTTGT AACCATAATT TGTGGAGATT ATGACAAGAA TTAACAAATT 32231 .......... .......... .......... .......... .......... .......... 637 CTAGGGCTGT GAATGATTCA TCATCTTTAC ACAACAATCT GAGAGTGCTA AGGTTTTTCG 32171 .......... .......... .......... .......... .......... .......... 637 AGCTGCTAAT GTTGTTTAGG GAGTAGGATT TTCTTAATAT TATGCATTCT TAATTATCGA 32111 .......... .......... .......... .......... .......... .......... 637 AGATTGACTA AGTCAATAGG GAGTGATCAC ATTGGTTCCT TTTAAGAACT TGACGACTAG 32051 .......... .......... .......... .......... .......... .......... 637 TTAAGAATTT AATAAAGTAG AGAAAATTAT AGGCTTATGT CATCTGCGAA AATACTGCAA 31991 .......... .......... .......... .......... .......... .......... 637 AAAAGAAGTG TTGAAATTAA CTGAGACCCT CAACATCTTC TTCCATACAC AGCCCAATAA 31931 .......... .......... .......... .......... .......... .......... 637 CCAAAGTTAT TCTATGCTTT CTTCATATTC TATTGAATAT ATTTACCATA CAATTGCATT 31871 .......... .......... .......... .......... .......... .......... 637 TTTTTCACCC TCTACCCTGC ATCGAAAGTT CTCCTATGGC TCTTTACATG TTAGGACTAG 31811 .......... .......... .......... .......... .......... .......... 637 GAATCTTGAT CTGGTTTTTG AAATCAAATT GAACGATACG AG 31769 | ||| | || |||| ||| ||||| | |||| || ..TTGTTGTT CTTTTTTTAT AAAAAAAATT GTGGAATACA AG 677 hqPGS_C04HBa0127E11.1-_SGN-U345486- (34262 34074,34043 33596) ******************************************************************************** EST sequence 11 +strand 813 n (File: SGN-U345486+) 1 TTTTAANTAC GATNCTCATG CTGGAGCTCC ACCGCGGTGG CGGCCGCTCT AGAACTAGTG 61 GATCCCCCGG GCTGCAGGAA TTCGGCACGA GGCTACAGCT TCTGAATGTG TATGATCTCT 121 ATCTCCCATT TGCGAACTTG TATTCCACAA TTTTTTTTAT AAAAAAAGAA CAACAATCCT 181 GAAGATGGCT GATGCCTTTA TGTCATTTAC AGTTCAAAAA TTGGGTGATT TCCTCATACA 241 ACAAGTTTCC TTGAGAACAA ATCTGACAAA GGAAGATGAG TGGCTGAGAA ATGAGCTACT 301 TTTCATACAG CCTTTCCTCA GAGATGCAGA ACTAAAACAA TGTGGAGATC AAAGATTTCA 361 ACAATGGGTG TTTGAGATCA ACTGTATTGC TAACGATGCT GTGGCTATAC TGAAGACTTA 421 TAACTTTGAG GCTGATAAAG GGGATGATGA CGGATTTGCT AGTCGTCTCA AGGCTTGCGC 481 TAGCATTTGT AGGAAGGAGA CTAAATTCTA CAACGTCAAT GAGGAGATTC AATCACGTCA 541 AGCAACGAAT CATGGATATC TCTCGCGAGC GAGAGACATA TGACATTACA AATATCAATA 601 CTAATACAGG AGAAGGGCCC GTAATCAGGT AGAACTTTGA GGAGAACTAC CTCATATTTG 661 ATGACCAGGA TTACATATTT TTGGGATTTA AGGATGTGTG CAAACATTCT AGCTGACTAC 721 TCAGAGAAAA CCTTCCAGAA AGGGCCCTTC CGTTATGCTT GGGCCNTTTG GGAAGACTAT 781 TTTGCCGAAA CCCGTTTTTA AAGCCTTATA TTC Predicted gene structure (within gDNA segment 34942 to 41004): Exon 1 35798 35810 ( 13 n); cDNA 99 111 ( 13 n); score: 0.769 Intron 1 35811 36760 ( 950 n); Pd: 0.000 (s: 0), Pa: 0.174 (s: 0) Exon 2 36761 36775 ( 15 n); cDNA 112 126 ( 15 n); score: 0.600 Intron 2 36776 38083 (1308 n); Pd: 0.635 (s: 0), Pa: 0.455 (s: 0) Exon 3 38084 38106 ( 23 n); cDNA 127 149 ( 23 n); score: 0.565 Intron 3 38107 38321 ( 215 n); Pd: 0.489 (s: 0), Pa: 0.000 (s: 0) Exon 4 38322 38347 ( 26 n); cDNA 150 176 ( 27 n); score: 0.827 Intron 4 38348 38516 ( 169 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 5 38517 39074 ( 558 n); cDNA 177 723 ( 547 n); score: 0.789 Intron 5 39075 40116 (1042 n); Pd: 0.000 (s: 0.76), Pa: 0.000 (s: 0) Exon 6 40117 40123 ( 7 n); cDNA 724 730 ( 7 n); score: 1.000 MATCH C04HBa0127E11.1+ SGN-U345486+ 0.789 642 0.790 C PGS_C04HBa0127E11.1+_SGN-U345486+ (35798 35810,36761 36775,38084 38106,38322 38347,38517 39074,40117 40123) Alignment (genomic DNA sequence = upper lines): CTTCAGAAAT TGTGGTTAGA TGGGAGAATA CAGAAACTGT CTCTGTTACC AAATTCCATC 35857 |||| ||| ||| CTTCTGAATG TGT....... .......... .......... .......... .......... 111 ACAATGATGG TTCTTTTGGA CTCAAAACTC ATGGAAGATC CGATGCCTAT TTTGGGAATG 35917 .......... .......... .......... .......... .......... .......... 111 TTGCCAAACC TAAGAAAACT CGAAGTTCTT AGAGCTTATC AAGGAAAAGA AATATTCTGC 35977 .......... .......... .......... .......... .......... .......... 111 AGTGATAATA GCTTCCCTCA ACTCGAGTTC CTTAGTCTTG CTTGTCTTGA GAACCTAGAC 36037 .......... .......... .......... .......... .......... .......... 111 ACATGACATT TAGCCACAAG TGCCATGCCT CTGATTAAAG GTCTTCGTAT TGATCACTGT 36097 .......... .......... .......... .......... .......... .......... 111 AAAAAGCTGA ACAAGATTCC CCAGAGAATG AAAGACGCGA AGCTTTTCAA GCATACATGA 36157 .......... .......... .......... .......... .......... .......... 111 AGTCTTATTT CATAAATAGT GTGTTAATAA TATTTCGGTT AAACAGGCGA GGAAGCTGTC 36217 .......... .......... .......... .......... .......... .......... 111 ACTTGAAGAC ATTTTTTGTC AGTTGGAGTT TGTTCGTCTT TGTTGATCTT CGATACATTG 36277 .......... .......... .......... .......... .......... .......... 111 AGAGTTGGCA TTCAGCTACA AGTCCCATGC CTGTTATTAA AGGTTTAGGT CGACATGAGT 36337 .......... .......... .......... .......... .......... .......... 111 GTTTGAAGTT GCATCAGATT CAAAAAAAAG AATGAAAAGT ATGCTGTGTA CTTTCATCCA 36397 .......... .......... .......... .......... .......... .......... 111 GCTACTGATT GTGAGCTTTA GATGGATTTT TGCACAAAGC ATTATAGGAT TTGCATTGTC 36457 .......... .......... .......... .......... .......... .......... 111 TCTACCCTGT TTCGAGGCCT AAGTAGGCCA TGTATTGACT AAATGAACCA AAGCTCATTT 36517 .......... .......... .......... .......... .......... .......... 111 ATCAAGGAGC ATTTTGATCA TTTTCTCTTC ATGATGGCAT AGCGAAGGAG TTCATTCATC 36577 .......... .......... .......... .......... .......... .......... 111 TAACTAGCTT TAGTACCTAA TTTTTGGGTT TTCTGATTCT GTACACACAA GCTCAAAAAT 36637 .......... .......... .......... .......... .......... .......... 111 CCGATGCCTC GTTCTTTCTG TTTTAGAACA GATCCTGTAA ACTACAAAAG ACTCGACTTT 36697 .......... .......... .......... .......... .......... .......... 111 TAATGCAAAA GTAGAGATGC AATACGTACC AAAATAATCC AATCACTGCA TCATGAATGG 36757 .......... .......... .......... .......... .......... .......... 111 CAGATGATGC CTTCTTACGT CTGCTTAAAC GCTGACACAT TCATTCCATT CTAGTAATTA 36817 ||||| || | | ...ATGATCT CTATCTCC.. .......... .......... .......... .......... 126 AGATCACATT GCATCGTCAA TGACAGAAAC AACACCAAAT ATCACCTACA GAGTAACGAA 36877 .......... .......... .......... .......... .......... .......... 126 ACCGAAAGTC AGAGGATGAC ACACATCAGA TTTTCACAAA AGGCAGTTGA CAAAGTACAG 36937 .......... .......... .......... .......... .......... .......... 126 ATTTTGGTTC ATAAAATTCA AGCAACATCA AATCTCAATG CACGCTATCT CAAGGCAATA 36997 .......... .......... .......... .......... .......... .......... 126 ATTGTGTCAT TTAACTTGAC CTAATTTCAA ATTTATGACT TTCAACATTG GATGTGCACA 37057 .......... .......... .......... .......... .......... .......... 126 AGTAAACATT TAAACTTGTA TAAAGTTAAA CAAATTGACA CATAAGTCTT ATATGTCATA 37117 .......... .......... .......... .......... .......... .......... 126 ATACACATAA GACACCACGT AGGACGCAAA CTGTCATGTA GGACGCAAAT TGTACACTCA 37177 .......... .......... .......... .......... .......... .......... 126 AAGTTGGAGG ACATAAATGT GAAACGAGCA GAAATTAAAC AAAGCAGCCG TTAATACCTG 37237 .......... .......... .......... .......... .......... .......... 126 TGAAGGAAAC TAAACAAAAA CTTTAAAGCA AAAAAAACCA AGAAATCATC ACTTCACTGA 37297 .......... .......... .......... .......... .......... .......... 126 AATTCAGCAT ACAGTCATGA TTCTTTCTGG GAGCAATTAG CAGAAACCTT TAAAAACCGA 37357 .......... .......... .......... .......... .......... .......... 126 AACGCCTGAA AATGGCGGAT GCCTTTGTGT CATTTGCAGC ACAAAATCTA GGCAATTTCC 37417 .......... .......... .......... .......... .......... .......... 126 TTATACAGGA AGTTAACATG CATTTTAAGT CGAAGAGAGG ATGTCCGATG GTTGAGAGAT 37477 .......... .......... .......... .......... .......... .......... 126 AAGCAGATTC CTCAAGGATG CGGAGGAAAA TACTATTAAC ATTGAACTAC ATAAGCTGCA 37537 .......... .......... .......... .......... .......... .......... 126 AAAATTGCAT TCACGCGTCC ATCTGAAGTG AATCATAGAT AAAGTCTCGT ATGGGCAAAA 37597 .......... .......... .......... .......... .......... .......... 126 AGTATTTCAA TGGCTCAAAT GTTGAGGAAG AGTGGTGTTC CGTACATACT ATAGTCCTAG 37657 .......... .......... .......... .......... .......... .......... 126 TTGAGTCGTC TAGATAAGTG AATTATGCTG ATAACTTTAA AGGACAGAAG GTGACTTAAG 37717 .......... .......... .......... .......... .......... .......... 126 CCTGTATTTT CTTTACTTCA TTATATTCTA AACCGATAAC GCCAATGACT ATTTCCAACT 37777 .......... .......... .......... .......... .......... .......... 126 GATAATATCC TAATGGTACT TACTCTTTAC CATTTCAAAA AAAAAAAAAA AAAGTGCCTT 37837 .......... .......... .......... .......... .......... .......... 126 TCACTTAGCT TGCATCTTTA TCGTCCTTGT TGATAATAGG AGCTTTCATT TCCTGTTGCC 37897 .......... .......... .......... .......... .......... .......... 126 TTTCATTATC ATGATTGCCC ACCACTTCAA GAAAGCATCA ATCAAGTTTC TGTCACTTTA 37957 .......... .......... .......... .......... .......... .......... 126 CTCATTATTT CAACTTTTTT TTTGTTGTTT TAGTTTTTCA ATGTTTAATT TCTTTTTTTG 38017 .......... .......... .......... .......... .......... .......... 126 TTTTTGGCTT CTTTTAAGTG TGTCATTTAA CTTGACCTAA TTTCAAATTT ATGCCCTTCA 38077 .......... .......... .......... .......... .......... .......... 126 ACTTAGAATG TACGAACAAA TATACAAACG CATTCCACGT AACATCCTGC ACGACAATTT 38137 || | ||||| ||| | | ......CATT TGCGAACTTG TATTCCACA. .......... .......... .......... 149 ATGTGATCGC TTCACCATAT GCTTCAACTC CATCATCAAA CAATTTTTAT AGATAATATC 38197 .......... .......... .......... .......... .......... .......... 149 AATTGGTGTA GAAAGAATTT GACTGGTTAG AATAAGAAGA TTCTTCTATT GAAATGTACC 38257 .......... .......... .......... .......... .......... .......... 149 TTTCGCATAG CTTGCATCTT TGTCCTTTTA AGACAATGGA ACTGCTTGCC TTGTCTAATA 38317 .......... .......... .......... .......... .......... .......... 149 GTTGATTTTT TTTAAAAAAA AA-AAAAACA AAAAAAAAAA CCACATGGTC ATATTTAGTT 38376 |||||| |||| ||||| || || |||| | ....ATTTTT TTTATAAAAA AAGAACAACA A......... .......... .......... 176 TTTTCTAAAC TTTATTCACA TTAGTGGACC CTTTGAACAC ATTTTTTGAG GTCTTACTTT 38436 .......... .......... .......... .......... .......... .......... 176 TATGTTTAGT GCTTCTGAGT TCTGAGGTTA TAAAATGATC TCATCTCCTT TTTTTTTTCA 38496 .......... .......... .......... .......... .......... .......... 176 ATCAAAAGTA GTAGTAGTAT TCCTAAAGAT GACTGATGCA TTTGTGTCAT TTGCAGTTCA 38556 |||| ||||| | ||||||| ||| |||||| || ||||||| .......... .......... TCCTGAAGAT GGCTGATGCC TTTATGTCAT TTACAGTTCA 216 AAAATTGGGT GATTTCCTAA TACAGGAAAT TAACCTACGT TTAAGTCTAA GAGAAGATAT 38616 |||||||||| |||||||| | |||| || | | | | | || ||| | | | || AAAATTGGGT GATTTCCTCA TACAACAAGT TTCCTTGAGA ACAAATCTGA CAAAGGAAGA 276 ACAGTGGCTG CGAAACGAGC TTCTCTTCAT GCACTCTTTC CTCAGAGATG CAGAACTAAA 38676 |||||||| |||| |||| | || ||||| || ||||| |||||||||| |||||||||| TGAGTGGCTG AGAAATGAGC TACTTTTCAT ACAGCCTTTC CTCAGAGATG CAGAACTAAA 336 GCAATGTGGA GATCAAAGAG TTCAACAGTG GGTGTTTGAG ATCAACTCTA TTGCTAATGA 38736 ||||||||| ||||||||| ||||||| || |||||||||| ||||||| || ||||||| || ACAATGTGGA GATCAAAGAT TTCAACAATG GGTGTTTGAG ATCAACTGTA TTGCTAACGA 396 CGCTGTTGCT ATACTCGAGA CTTATAGCTT CAAGGTTGCT AAAGGTAATG ACAATGGATT 38796 ||||| ||| ||||| ||| |||||| ||| ||| || | ||||| ||| | | ||||| TGCTGTGGCT ATACTGAAGA CTTATAACTT TGAGGCTGAT AAAGGGGATG ATGACGGATT 456 TTCTAGTCGT CTCAAGGCTT GCGCTTGCAT CTGTAGGAGT GAGGCCGGAT TCTACAAAGT 38856 | |||||||| |||||||||| ||||| |||| ||||||| ||| | || ||||||| || TGCTAGTCGT CTCAAGGCTT GCGCTAGCAT TTGTAGGAAG GAGACTAAAT TCTACAACGT 516 TTCCACGGAG ATTGAATCAC -TCAAGCAAC GAATCATGGA TATATCTCGC AAACGAGATA 38915 |||| ||| |||||| ||||||||| |||||||||| ||| |||||| | ||||| | CAATGAGGAG ATTCAATCAC GTCAAGCAAC GAATCATGGA TATCTCTCGC GAGCGAGAGA 576 CTTATGGTAT TAGAGATATC AATAATGCAG GAGAAGGTCC AAGTTATCAG TCTGCCATGG 38975 | |||| || || | ||||| |||| | | | ||| ||| | | | || || CATATGACAT TACAAATATC AATACT--AA TA-CAGG-AG AAG-GGCCCG T-AATCA-GG 629 TTAGAACATT GAGGAGAACT ACCTCATATG TGGATGACCA GGATTACATT TTTGTTGGCT 39035 |||||| || |||||||||| ||||||||| | |||||||| ||||||||| ||| | || | -TAGAACTTT GAGGAGAACT ACCTCATAT- TTGATGACCA GGATTACATA TTTTTGGGAT 687 TTCAGGATGT TGTACAGACA TTGCTAGCTC AACTTCTCAA AGCTGAGCCT CGTCGAACCG 39095 || |||||| ||| || ||| || |||||| ||| |||| TTAAGGATG- TGTGCAAACA TT-CTAGCT- GACTACTCA. .......... .......... 723 TCCTCTCCAT TTATGGCATG GGTGGATTAG GCAAGACCAC TCTTGCAAGA AACCTTTACA 39155 .......... .......... .......... .......... .......... .......... 723 TCAATCCTAA TATAGCCTCT AGCTTCTCTA CACACGCTTG GATATGTGTT TCTCAAGAGT 39215 .......... .......... .......... .......... .......... .......... 723 ATAACACAAT GGATCTTCTT AAAACTATTA TAAAATCCAT CCGAGGTCGC ACCAAGGAAA 39275 .......... .......... .......... .......... .......... .......... 723 CTCTGGATTT GTTGGAAAAG ATGGATGAAA GAGATCTAGA AAACCACCTT CGTGATCTAT 39335 .......... .......... .......... .......... .......... .......... 723 TGAAAGAACG CAAATACCTC GTGGTGGTTG ATGATGTCTG GCAGAGAGAA GCATGGGAGA 39395 .......... .......... .......... .......... .......... .......... 723 GTTTGAAAAG AGCATTCCCG GATGGCAAGA ATGGCAGCAG AGTCATTGTT ACCACGCGCA 39455 .......... .......... .......... .......... .......... .......... 723 AAGAGGATGT CGCTGAAAGA GCAGCCGACA GAGGTTTTGT TCATAAACTT CGTTTCCTAA 39515 .......... .......... .......... .......... .......... .......... 723 GTCAAGAAGA AAGTTGGGAT CACTTTCTTA GGAAACTACT TGATGTTCGA GCAATGGTTC 39575 .......... .......... .......... .......... .......... .......... 723 CAGAAATGGA AAGTCTAGCT AAGGATATGG TGGAAAAAGT GTAGAGGCTT ACCTCTTGCA 39635 .......... .......... .......... .......... .......... .......... 723 ATTGTTGTAT TGAGCGGACT ACTTTCACAT AAAAAGGAGC TAGATGAATG GCAAAAGGTG 39695 .......... .......... .......... .......... .......... .......... 723 AAAGACCACC TTTGGAAGAA CATTAAAGAT GACTCTACTG AAATCTCCTA CATACTATCA 39755 .......... .......... .......... .......... .......... .......... 723 TTAAGCTACA ACGATTTGTC AACTGCACTC AAGCAGTGTT TTCTCTACTT TGGTATTTTT 39815 .......... .......... .......... .......... .......... .......... 723 CCAGAAGATC AAGAGCTCGA GGCTGAAAAC ATTATACGGT TGTGGGTGGC TGAGGGTTTC 39875 .......... .......... .......... .......... .......... .......... 723 ATACCAAGAG GAGAAGAAAG AATAGAGGAT GTCGCTGAAG GCTTCTTAAA TGAGCTGATA 39935 .......... .......... .......... .......... .......... .......... 723 AGACGAAGCT TGGTTCAAGT GGCTGGAACA TTTTGGGAAA GAGTTATTCT ATGTAGGGTT 39995 .......... .......... .......... .......... .......... .......... 723 CACGATGTAG TTCGTGATCT TTCCATACAA AAGGCATTGG AGGTAAACTT CTTTGATATT 40055 .......... .......... .......... .......... .......... .......... 723 TATGATCCAA GAAACCACTC CATATCCTTC TTATGCATCA GGCATGCCAT TCATGATCAA 40115 .......... .......... .......... .......... .......... .......... 723 GGAGAAAA 40123 ||||||| .GAGAAAA 730 hqPGS_C04HBa0127E11.1+_SGN-U345486+ (38322 38347,38517 39074) ******************************************************************************** EST sequence 37 -strand 725 n (File: SGN-U326781-) 1 GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG TATAGTCAAT ACCTGGCCTA 61 CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 121 TAAAATCCAT CCAAGGTTGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 181 GAGATCTAGA AAATCACCTT CGTGATCTAC TGAAAGAACG CAAATACCTT GTAGTGGTTG 241 ATGATATATG GCAAAGAGAA GCATGGGAAA GTTTGAAAAG AGCATTCCCG GATGACAAGA 301 ATGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATAT CGCTGAAAGA GCAGCCGACA 361 GAGGTTTTGT TCATAAACTT CGTTTCCTAA GTCAAGAAGA AAGTTGGGAT CTCTTTCTTA 421 GGAAACTACT TGATGTTCGA GCAATGGTTG CAGAAATGGA AAGTCTAGCT AAGGATATGG 481 TGGAAAAGTG TAGAGGTTTA CCTCTTGCAA TTGTTGTATT GAGCGGACTA CTTTCGCATA 541 AAAAGGATCT AGATGAATGG CAAAAGGTGA AAGATCACCT TTGGAAGAGC ATTAAAGAAG 601 ATAAATCTGT TGAAATCTCC AACATACTAT CACTAAGCTA CAATGATTTG TCAATTGAGC 661 TCAAGCAGTG TTTTCTCTAC TTTGGTATGT TTCCAGAAGA TCGAGTGGTC AAGGCTGAAA 721 ACACA Predicted gene structure (within gDNA segment 33025 to 40773): Exon 1 39126 39846 ( 721 n); cDNA 1 723 ( 723 n); score: 0.908 MATCH C04HBa0127E11.1+ SGN-U326781- 0.908 721 0.994 C PGS_C04HBa0127E11.1+_SGN-U326781- (39126 39846) Alignment (genomic DNA sequence = upper lines): GCAAGACCAC TCTTGCAAGA AACCTTTACA TCAATCCTAA TATAGCCTCT AGCTTCTCTA 39185 |||||||||| |||||||||| ||||| |||| | |||| ||||| | | | || ||| GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG TATAGTCAAT ACCTGGCCTA 60 CACACGCTTG GATATGTGTT TCTCAAGAGT ATAACACAAT GGATCTTCTT AAAACTATTA 39245 ||| ||||| |||||||||| |||||||||| | |||||||| |||||||||| || ||||| | CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 120 TAAAATCCAT CCGAGGTCGC ACCAAGGAAA CTCTGGATTT GTTGGAAAAG ATGGATGAAA 39305 |||||||||| || |||| || |||| || || |||| | || |||||||||| |||||||||| TAAAATCCAT CCAAGGTTGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 180 GAGATCTAGA AAACCACCTT CGTGATCTAT TGAAAGAACG CAAATACCTC GTGGTGGTTG 39365 |||||||||| ||| |||||| ||||||||| |||||||||| ||||||||| || ||||||| GAGATCTAGA AAATCACCTT CGTGATCTAC TGAAAGAACG CAAATACCTT GTAGTGGTTG 240 ATGATGTCTG GCAGAGAGAA GCATGGGAGA GTTTGAAAAG AGCATTCCCG GATGGCAAGA 39425 ||||| | || ||| |||||| |||||||| | |||||||||| |||||||||| |||| ||||| ATGATATATG GCAAAGAGAA GCATGGGAAA GTTTGAAAAG AGCATTCCCG GATGACAAGA 300 ATGGCAGCAG AGTCATTGTT ACCACGCGCA AAGAGGATGT CGCTGAAAGA GCAGCCGACA 39485 |||||||||| ||||||| || |||||||||| |||||||| | |||||||||| |||||||||| ATGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATAT CGCTGAAAGA GCAGCCGACA 360 GAGGTTTTGT TCATAAACTT CGTTTCCTAA GTCAAGAAGA AAGTTGGGAT CACTTTCTTA 39545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| GAGGTTTTGT TCATAAACTT CGTTTCCTAA GTCAAGAAGA AAGTTGGGAT CTCTTTCTTA 420 GGAAACTACT TGATGTTCGA GCAATGGTTC CAGAAATGGA AAGTCTAGCT AAGGATATGG 39605 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GGAAACTACT TGATGTTCGA GCAATGGTTG CAGAAATGGA AAGTCTAGCT AAGGATATGG 480 TGGAAAAAGT GTAGAGGCTT ACCTCTTGCA ATTGTTGTAT TGAGCGGACT ACTTTCACAT 39665 ||| |||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||| ||| TGG-AAAAGT GTAGAGGTTT ACCTCTTGCA ATTGTTGTAT TGAGCGGACT ACTTTCGCAT 539 AAAAAGGAGC TAGATGAATG GCAAAAGGTG AAAGACCACC TTTGGAAGAA CATT--A-AA 39722 |||||||| | |||||||||| |||||||||| ||||| |||| ||||||||| |||| | || AAAAAGGATC TAGATGAATG GCAAAAGGTG AAAGATCACC TTTGGAAGAG CATTAAAGAA 599 GATGACTCTA CTGAAATCTC CTACATACTA TCATTAAGCT ACAACGATTT GTCAACTGCA 39782 ||| | ||| ||||||||| | |||||||| ||| |||||| |||| ||||| ||||| || GATAAATCTG TTGAAATCTC CAACATACTA TCACTAAGCT ACAATGATTT GTCAATTGAG 659 CTCAAGCAGT GTTTTCTCTA CTTTGGTATT TTTCCAGAAG ATCAAGAGCT CGAGGCTGAA 39842 |||||||||| |||||||||| ||||||||| |||||||||| ||| || | | | |||||||| CTCAAGCAGT GTTTTCTCTA CTTTGGTATG TTTCCAGAAG ATCGAGTGGT CAAGGCTGAA 719 AACA 39846 |||| AACA 723 hqPGS_C04HBa0127E11.1+_SGN-U326781- (39126 39846) ******************************************************************************** EST sequence 31 +strand 1090 n (File: SGN-U316159+) 1 TTAGGGTTTA TGAAAATGCA GAGGTGCTGT TCATCTGCGA TAGGTAAACG ATGGTTTTCT 61 TCATTCAACA ATGATAAAAT TGTGGCTTCA GTGCTCTTTG AAAGATTACC GGTAGTGGTA 121 CCCAAAATCG ATCCTACTGT ATATGCTTTT CAAGAATTTT CGTTTCGTTG GAGGCAGCAA 181 TATCGGCGAG AGTATCCAGA AAGTTTTCTG AAGAAGTCTG ATACCAGGGG AAAAGGTGAT 241 TATCAAATTG ATTATAAACC AGCTCCTCGA ATCTCAGAAG CAGATAAGAC TAATGATCAA 301 AGGTCATTAC AGCGAGCACT AGACAAGAGA CTCTATCTTC TAGTCCATGG TACCACACAA 361 GGTAGTGGAA AGCCTGTCTG GCATTTCCCT GAAAAAGTTT ATGAGTCTGA AGAGAATTTG 421 CGCAAGTGTG CTGAGTCTGC CTTAGAATCT TTCATTGGAG ATCTTTCACA TACATATTTT 481 GTTGGAAATG CCCCTATGGG TCATATGGTC ATGCAACCCA CTGAAGACAA GAAAATCCCT 541 TCAATCAAGC GCTTCTTCTT CAAATCCCAA GTTATTGCAG CCAACAAATT TGATATTAGG 601 AAATGTGATG ATTTTGTCTG GGTGACCAAA GATGAACTGT TGGAATACTT TCCCGAGCAA 661 GCTGAATTCC TGAACAAGAT GATCATCAGC TGACGTTAGT TTCTGCTCAA ACTTCAGGCT 721 TCGTAGGATA GCGGAAATAG TTTTGATCTG AAAAATCCAT TTCTTCCCGC AAATGCAATG 781 GGCTTGGACT GCTGGAGACT GATTTTTATG TCTCGACAGT CTGACTAGCA TGCCATTCAT 841 CAAGTCCTGT AGAATTTTGA ACATAGGATA CCTAAATTAT GATAGCCTTC TGCCTCAGCT 901 ATCACCAATC CTCTTTGTGA GAAGCTATGC TAAAAACTCT GAAATAGTCA TGAATTTTAG 961 TATGAATATG CTTTTGTAGA TGCACGATTT CATCTCGCGT CATAAAATAA ACAAAACAAA 1021 TTACATGTTG CAGCCTTAAC GAGTTGCGAG CTTTGTTTCA TAGCTGCATT GTGCATAGAG 1081 AAAAAAAAAA Predicted gene structure (within gDNA segment 46123 to 42103): Exon 1 45523 45363 ( 161 n); cDNA 1 161 ( 161 n); score: 1.000 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 44819 44754 ( 66 n); cDNA 162 227 ( 66 n); score: 1.000 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 44335 44261 ( 75 n); cDNA 228 302 ( 75 n); score: 1.000 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 1.00), Pa: 0.620 (s: 1.00) Exon 4 43811 43688 ( 124 n); cDNA 303 426 ( 124 n); score: 1.000 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 1.00), Pa: 0.950 (s: 1.00) Exon 5 43601 43479 ( 123 n); cDNA 427 549 ( 123 n); score: 1.000 Intron 5 43478 43326 ( 153 n); Pd: 0.999 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 6 43325 42793 ( 533 n); cDNA 550 1082 ( 533 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-U316159+ 1.000 1082 0.993 C PGS_C04HBa0127E11.1-_SGN-U316159+ (45523 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 42793) Alignment (genomic DNA sequence = upper lines): TTAGGGTTTA TGAAAATGCA GAGGTGCTGT TCATCTGCGA TAGGTAAACG ATGGTTTTCT 45464 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGGGTTTA TGAAAATGCA GAGGTGCTGT TCATCTGCGA TAGGTAAACG ATGGTTTTCT 60 TCATTCAACA ATGATAAAAT TGTGGCTTCA GTGCTCTTTG AAAGATTACC GGTAGTGGTA 45404 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTCAACA ATGATAAAAT TGTGGCTTCA GTGCTCTTTG AAAGATTACC GGTAGTGGTA 120 CCCAAAATCG ATCCTACTGT ATATGCTTTT CAAGAATTTT CGTAAGTTTT TTCTTTTTTT 45344 |||||||||| |||||||||| |||||||||| |||||||||| | CCCAAAATCG ATCCTACTGT ATATGCTTTT CAAGAATTTT C......... .......... 161 CTGTTCAATT GTTGCACGAA ATCGAAGTGT AATCAATCCC TTTTGTAATC CAATTACAAT 45284 .......... .......... .......... .......... .......... .......... 161 GATTTACTTT TAGAGCGATA ATTGCTGGTT CGTATAATAG AATGATCAAA ACATTTACTA 45224 .......... .......... .......... .......... .......... .......... 161 GTGTTGATTT TTTTTTTCGC TTTTCAGAAA CTGTGCTGGT TAATTAGGGA TTAAGGGGTA 45164 .......... .......... .......... .......... .......... .......... 161 CTTTGATATG TTTGCTTGAG AAAAATAGTG CTAAAAAACA ATAATTTTAT GCCTTAGTCA 45104 .......... .......... .......... .......... .......... .......... 161 GGTCAAATTA TGAATCTTCG CTATTTTGTA AGTTTGATGA AGTAAATCTA CGAAAGAAAA 45044 .......... .......... .......... .......... .......... .......... 161 TAGTTTCTTT TGTCCAAAAT TTTGCAGTGG TTTCTAATGC TTAGGAGATA ATGTGTAATG 44984 .......... .......... .......... .......... .......... .......... 161 AAGTTGAGAA TAATGAGGTT ATAGAATGGG TTAGAAGGAG AAAATGAGAA TAAAAAAGAG 44924 .......... .......... .......... .......... .......... .......... 161 CAAAGGTTCA TGAACAAGAG TTGGCGAATG ACAATGTAGA TGATTGTTTA ACGTAATTGG 44864 .......... .......... .......... .......... .......... .......... 161 TGTTTAGTTG ATTGCAGTAA TTTTATGATT AATTTCTTTT ATAGGTTTCG TTGGAGGCAG 44804 |||||| |||||||||| .......... .......... .......... .......... ....GTTTCG TTGGAGGCAG 177 CAATATCGGC GAGAGTATCC AGAAAGTTTT CTGAAGAAGT CTGATACCAG GTACATTGAT 44744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATATCGGC GAGAGTATCC AGAAAGTTTT CTGAAGAAGT CTGATACCAG .......... 227 GTTGCATTTT TTGAATTACA CCTTGCCATT GAATACCTTT CCTTGTGAAT TATGTATCTT 44684 .......... .......... .......... .......... .......... .......... 227 CATTTATGAT GAAATATTAA CTAATGAATG GTATGAAGAG TGTGCATAGG ATGTATGAAA 44624 .......... .......... .......... .......... .......... .......... 227 TAAGTTTAAA CATAATAGAC CAGTGAAATT GATTTAGGAG CTGAATAGCA CAAAGAGAGC 44564 .......... .......... .......... .......... .......... .......... 227 ATAAAAGTCG AAAAGTGATG AAGATTTTCT GAGCGTTTTT CTTTACTCTA GAAATAGAGT 44504 .......... .......... .......... .......... .......... .......... 227 TTGTCTAAAT TGCTTGTGTA GTATTATTGC CTTTTCAAGC ATGTGTTCTT CCTTATTAGC 44444 .......... .......... .......... .......... .......... .......... 227 CATTAAATAT GTGCATGGTT CTTCTTGAAC ATGCTATCAC ATACTGTTCT GTCTAGTGTC 44384 .......... .......... .......... .......... .......... .......... 227 AAATGCCACA TGGTCAGTGA CTCGGTTACA TCTATATGTT ACATGCAGGG GAAAAGGTGA 44324 || |||||||||| .......... .......... .......... .......... ........GG GAAAAGGTGA 239 TTATCAAATT GATTATAAAC CAGCTCCTCG AATCTCAGAA GCAGATAAGA CTAATGATCA 44264 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCAAATT GATTATAAAC CAGCTCCTCG AATCTCAGAA GCAGATAAGA CTAATGATCA 299 AAGGTACCAA AGCTTGGACT TCTAACTTTT GTCAAATATT ATACAAGAAT TTGAATATGG 44204 ||| AAG....... .......... .......... .......... .......... .......... 302 ACATTGCACT AGAAGATATT TTTCTTTCAA GAGTTGCTTT ACTAAATTCA GCAGACTCGT 44144 .......... .......... .......... .......... .......... .......... 302 ATTTCCTGAC AATAGATGAT TATTGACTTC TAATTGTTTA CCATAACTAA ATTTTTGATG 44084 .......... .......... .......... .......... .......... .......... 302 TTGAAATGCC TTAATATTGT CTCGAAGTAA TTGATGTGTT AGTTACATGA GATTTTTCAA 44024 .......... .......... .......... .......... .......... .......... 302 TTGCGCATTG TGTAAGTACT TAAAATTAGG AATGCAGCGC TACTGTTTTT TTTTTTACCT 43964 .......... .......... .......... .......... .......... .......... 302 TTTATTTGCC TTCTTCACCC TCTCTACCCC ACAAAATAAA GCTTGCGTCT TTTTTTTCAA 43904 .......... .......... .......... .......... .......... .......... 302 CTCATCACTT GGTCAAAATT TGCTAAAAGG TGCTAACCCT ACACAAAACC TTTTCATGTT 43844 .......... .......... .......... .......... .......... .......... 302 ACTAATTATG AGATTTTATT GATATGCATA AGGTCATTAC AGCGAGCACT AGACAAGAGA 43784 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTCATTAC AGCGAGCACT AGACAAGAGA 330 CTCTATCTTC TAGTCCATGG TACCACACAA GGTAGTGGAA AGCCTGTCTG GCATTTCCCT 43724 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTATCTTC TAGTCCATGG TACCACACAA GGTAGTGGAA AGCCTGTCTG GCATTTCCCT 390 GAAAAAGTTT ATGAGTCTGA AGAGAATTTG CGCAAGGTAA ATAGTACTTA TCAGTCCATT 43664 |||||||||| |||||||||| |||||||||| |||||| GAAAAAGTTT ATGAGTCTGA AGAGAATTTG CGCAAG.... .......... .......... 426 TCTATGCTGA TTTCAGTAAT TTGGGTTAGG AAAATGAAAA TATAAGTTGC AACTATTTGC 43604 .......... .......... .......... .......... .......... .......... 426 AGTGTGCTGA GTCTGCCTTA GAATCTTTCA TTGGAGATCT TTCACATACA TATTTTGTTG 43544 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..TGTGCTGA GTCTGCCTTA GAATCTTTCA TTGGAGATCT TTCACATACA TATTTTGTTG 484 GAAATGCCCC TATGGGTCAT ATGGTCATGC AACCCACTGA AGACAAGAAA ATCCCTTCAA 43484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATGCCCC TATGGGTCAT ATGGTCATGC AACCCACTGA AGACAAGAAA ATCCCTTCAA 544 TCAAGGTATG TACATTTTAA TTATTGAAAG TATTGAAGAA AAAGAGAGTA AAGAAATTCT 43424 ||||| TCAAG..... .......... .......... .......... .......... .......... 549 CTCATCCCAC GGTGAGTGAG GGACGGAAGG AGGGAAATTT CCTGATAGCT TCTGCAAATT 43364 .......... .......... .......... .......... .......... .......... 549 TTTGTGCTTC TTATATATTC TATATTTTAT TGTGGCAGCG CTTCTTCTTC AAATCCCAAG 43304 || |||||||||| |||||||||| .......... .......... .......... ........CG CTTCTTCTTC AAATCCCAAG 571 TTATTGCAGC CAACAAATTT GATATTAGGA AATGTGATGA TTTTGTCTGG GTGACCAAAG 43244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGCAGC CAACAAATTT GATATTAGGA AATGTGATGA TTTTGTCTGG GTGACCAAAG 631 ATGAACTGTT GGAATACTTT CCCGAGCAAG CTGAATTCCT GAACAAGATG ATCATCAGCT 43184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAACTGTT GGAATACTTT CCCGAGCAAG CTGAATTCCT GAACAAGATG ATCATCAGCT 691 GACGTTAGTT TCTGCTCAAA CTTCAGGCTT CGTAGGATAG CGGAAATAGT TTTGATCTGA 43124 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGTTAGTT TCTGCTCAAA CTTCAGGCTT CGTAGGATAG CGGAAATAGT TTTGATCTGA 751 AAAATCCATT TCTTCCCGCA AATGCAATGG GCTTGGACTG CTGGAGACTG ATTTTTATGT 43064 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCCATT TCTTCCCGCA AATGCAATGG GCTTGGACTG CTGGAGACTG ATTTTTATGT 811 CTCGACAGTC TGACTAGCAT GCCATTCATC AAGTCCTGTA GAATTTTGAA CATAGGATAC 43004 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGACAGTC TGACTAGCAT GCCATTCATC AAGTCCTGTA GAATTTTGAA CATAGGATAC 871 CTAAATTATG ATAGCCTTCT GCCTCAGCTA TCACCAATCC TCTTTGTGAG AAGCTATGCT 42944 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAATTATG ATAGCCTTCT GCCTCAGCTA TCACCAATCC TCTTTGTGAG AAGCTATGCT 931 AAAAACTCTG AAATAGTCAT GAATTTTAGT ATGAATATGC TTTTGTAGAT GCACGATTTC 42884 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACTCTG AAATAGTCAT GAATTTTAGT ATGAATATGC TTTTGTAGAT GCACGATTTC 991 ATCTCGCGTC ATAAAATAAA CAAAACAAAT TACATGTTGC AGCCTTAACG AGTTGCGAGC 42824 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCGCGTC ATAAAATAAA CAAAACAAAT TACATGTTGC AGCCTTAACG AGTTGCGAGC 1051 TTTGTTTCAT AGCTGCATTG TGCATAGAGA A 42793 |||||||||| |||||||||| |||||||||| | TTTGTTTCAT AGCTGCATTG TGCATAGAGA A 1082 hqPGS_C04HBa0127E11.1-_SGN-U316159+ (45523 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 42793) ******************************************************************************** EST sequence 32 +strand 1118 n (File: SGN-U316160+) 1 ACACATTCAC GGAGAAATTT TAATTTGGGT TTTTAGGGTT TGTGAAAATG CAGAGGTGCT 61 GTTCGTCTGC TGGTCGATCT GTGACATCTA AACGATGGTT TTCTTCATCA AGCACTGATA 121 AAATTGTTGC TTCAGTGCTC TTCGAGAGAT TACCAGTTAT AGTTCCCAAA ATCGATCCTA 181 CTGTATATGC TTTTCAAGAA TTTTCGTTTC GTTGGAGGCA GCAGTATCGA CGAGAGTATC 241 CAGAAAGTTT TCTGAAGAAG TCGGATACTA GGGGAAAAGG TGATTATCAA ATTGATTATA 301 AACCAGCTCC GCGAATCTCA GAAGCAGATA AGACTAATGA TCAAAGGTCA TTACAGCGAG 361 CACTAGACAG GAGACTCTAT CTTCTAGTCC ATGGTACCAC ACATGGTAGT GGAAAGCCCG 421 TCTGGCATTT TCCTGAAAAA GTTTATGAGT CTGAAGAGAA CTTGCGCAAG TGTGCTGAGT 481 CTGCCCTAGA ATCTTTCATT GGAGATCTTT CACATACATA TTTTGTTGGA AACGCCCCTA 541 TGGGTCATAT GGTCATACAA CCCACTGAAG ACAAGAAAAT TCTGTCAATC AAGCGCTTCT 601 TCTTCAAATC CCAAGTCATT GCAGTCAACA AATTTGATAT TAGAAAGTGT GATGATTTTG 661 TCTGGGTGAC AAAAGATGAA TTGTTGGAAT ACTTTCCTGA GCAAGCTGAA TTCCTGAACA 721 AGATGATCAT CAGCTGATGT TTGTTTCTGC TCAAACTTCA GGCTTGGTAG GATAGCTAGC 781 GGTTTGAGTA TATCCTGATC TGAAAAATCC ACTTCTTTCC GCAAATGTAA TGGCTTTGAT 841 TACTGGAGAC CAATTTTATG TACTGGCAGC AAGAAGACCT GACTGCAATT TGCCAGTGTG 901 CCATTCATCA AGTTTTGTAG AATTTTGAAC ATAGGGATAC CTTAAGTTGT GATGGCCTTC 961 TATCTCAGCT ATCACCATTC CTATTTGGGA GAAGCTATGC TCAGAACTCT GAACTGGTCA 1021 TGCAATTTAG TATGAATATA CTTGTAGATG CATGATTTCA TCTCGTGTCA TGAAATAAAT 1081 AAAACAAATT ACGTGTTGTA GCCTTAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 46344 to 39014): Exon 1 45499 45363 ( 137 n); cDNA 68 205 ( 138 n); score: 0.858 Intron 1 45362 44820 ( 543 n); Pd: 0.908 (s: 0.92), Pa: 0.999 (s: 0.96) Exon 2 44819 44754 ( 66 n); cDNA 206 271 ( 66 n); score: 0.939 Intron 2 44753 44336 ( 418 n); Pd: 0.750 (s: 0.92), Pa: 0.977 (s: 0.98) Exon 3 44335 44261 ( 75 n); cDNA 272 346 ( 75 n); score: 0.987 Intron 3 44260 43812 ( 449 n); Pd: 0.998 (s: 0.98), Pa: 0.620 (s: 0.98) Exon 4 43811 43688 ( 124 n); cDNA 347 470 ( 124 n); score: 0.960 Intron 4 43687 43602 ( 86 n); Pd: 0.998 (s: 0.96), Pa: 0.950 (s: 0.98) Exon 5 43601 43479 ( 123 n); cDNA 471 593 ( 123 n); score: 0.951 Intron 5 43478 43326 ( 153 n); Pd: 0.999 (s: 0.92), Pa: 0.992 (s: 0.96) Exon 6 43325 42836 ( 490 n); cDNA 594 1107 ( 514 n); score: 0.756 PPA cDNA 1108 1118 MATCH C04HBa0127E11.1- SGN-U316160+ 0.847 1015 0.908 C PGS_C04HBa0127E11.1-_SGN-U316160+ (45499 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 42836) Alignment (genomic DNA sequence = upper lines): TGCTGTTC-A TCTGCGATAG GTAAACGATG GTTTTCTTCA TTCAACAATG ATAAAATTGT 45441 ||||| || | |||| || | ||||||||| |||||||||| | | || || |||||||||| TGCTGGTCGA TCTGTGACAT CTAAACGATG GTTTTCTTCA TCAAGCACTG ATAAAATTGT 127 GGCTTCAGTG CTCTTTGAAA GATTACCGGT AGTGGTACCC AAAATCGATC CTACTGTATA 45381 ||||||||| ||||| || | ||||||| || | || ||| |||||||||| |||||||||| TGCTTCAGTG CTCTTCGAGA GATTACCAGT TATAGTTCCC AAAATCGATC CTACTGTATA 187 TGCTTTTCAA GAATTTTCGT AAGTTTTTTC TTTTTTTCTG TTCAATTGTT GCACGAAATC 45321 |||||||||| |||||||| TGCTTTTCAA GAATTTTC.. .......... .......... .......... .......... 205 GAAGTGTAAT CAATCCCTTT TGTAATCCAA TTACAATGAT TTACTTTTAG AGCGATAATT 45261 .......... .......... .......... .......... .......... .......... 205 GCTGGTTCGT ATAATAGAAT GATCAAAACA TTTACTAGTG TTGATTTTTT TTTTCGCTTT 45201 .......... .......... .......... .......... .......... .......... 205 TCAGAAACTG TGCTGGTTAA TTAGGGATTA AGGGGTACTT TGATATGTTT GCTTGAGAAA 45141 .......... .......... .......... .......... .......... .......... 205 AATAGTGCTA AAAAACAATA ATTTTATGCC TTAGTCAGGT CAAATTATGA ATCTTCGCTA 45081 .......... .......... .......... .......... .......... .......... 205 TTTTGTAAGT TTGATGAAGT AAATCTACGA AAGAAAATAG TTTCTTTTGT CCAAAATTTT 45021 .......... .......... .......... .......... .......... .......... 205 GCAGTGGTTT CTAATGCTTA GGAGATAATG TGTAATGAAG TTGAGAATAA TGAGGTTATA 44961 .......... .......... .......... .......... .......... .......... 205 GAATGGGTTA GAAGGAGAAA ATGAGAATAA AAAAGAGCAA AGGTTCATGA ACAAGAGTTG 44901 .......... .......... .......... .......... .......... .......... 205 GCGAATGACA ATGTAGATGA TTGTTTAACG TAATTGGTGT TTAGTTGATT GCAGTAATTT 44841 .......... .......... .......... .......... .......... .......... 205 TATGATTAAT TTCTTTTATA GGTTTCGTTG GAGGCAGCAA TATCGGCGAG AGTATCCAGA 44781 ||||||||| ||||||||| ||||| |||| |||||||||| .......... .......... .GTTTCGTTG GAGGCAGCAG TATCGACGAG AGTATCCAGA 244 AAGTTTTCTG AAGAAGTCTG ATACCAGGTA CATTGATGTT GCATTTTTTG AATTACACCT 44721 |||||||||| |||||||| | |||| || AAGTTTTCTG AAGAAGTCGG ATACTAG... .......... .......... .......... 271 TGCCATTGAA TACCTTTCCT TGTGAATTAT GTATCTTCAT TTATGATGAA ATATTAACTA 44661 .......... .......... .......... .......... .......... .......... 271 ATGAATGGTA TGAAGAGTGT GCATAGGATG TATGAAATAA GTTTAAACAT AATAGACCAG 44601 .......... .......... .......... .......... .......... .......... 271 TGAAATTGAT TTAGGAGCTG AATAGCACAA AGAGAGCATA AAAGTCGAAA AGTGATGAAG 44541 .......... .......... .......... .......... .......... .......... 271 ATTTTCTGAG CGTTTTTCTT TACTCTAGAA ATAGAGTTTG TCTAAATTGC TTGTGTAGTA 44481 .......... .......... .......... .......... .......... .......... 271 TTATTGCCTT TTCAAGCATG TGTTCTTCCT TATTAGCCAT TAAATATGTG CATGGTTCTT 44421 .......... .......... .......... .......... .......... .......... 271 CTTGAACATG CTATCACATA CTGTTCTGTC TAGTGTCAAA TGCCACATGG TCAGTGACTC 44361 .......... .......... .......... .......... .......... .......... 271 GGTTACATCT ATATGTTACA TGCAGGGGAA AAGGTGATTA TCAAATTGAT TATAAACCAG 44301 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GGGAA AAGGTGATTA TCAAATTGAT TATAAACCAG 306 CTCCTCGAAT CTCAGAAGCA GATAAGACTA ATGATCAAAG GTACCAAAGC TTGGACTTCT 44241 |||| ||||| |||||||||| |||||||||| |||||||||| CTCCGCGAAT CTCAGAAGCA GATAAGACTA ATGATCAAAG .......... .......... 346 AACTTTTGTC AAATATTATA CAAGAATTTG AATATGGACA TTGCACTAGA AGATATTTTT 44181 .......... .......... .......... .......... .......... .......... 346 CTTTCAAGAG TTGCTTTACT AAATTCAGCA GACTCGTATT TCCTGACAAT AGATGATTAT 44121 .......... .......... .......... .......... .......... .......... 346 TGACTTCTAA TTGTTTACCA TAACTAAATT TTTGATGTTG AAATGCCTTA ATATTGTCTC 44061 .......... .......... .......... .......... .......... .......... 346 GAAGTAATTG ATGTGTTAGT TACATGAGAT TTTTCAATTG CGCATTGTGT AAGTACTTAA 44001 .......... .......... .......... .......... .......... .......... 346 AATTAGGAAT GCAGCGCTAC TGTTTTTTTT TTTACCTTTT ATTTGCCTTC TTCACCCTCT 43941 .......... .......... .......... .......... .......... .......... 346 CTACCCCACA AAATAAAGCT TGCGTCTTTT TTTTCAACTC ATCACTTGGT CAAAATTTGC 43881 .......... .......... .......... .......... .......... .......... 346 TAAAAGGTGC TAACCCTACA CAAAACCTTT TCATGTTACT AATTATGAGA TTTTATTGAT 43821 .......... .......... .......... .......... .......... .......... 346 ATGCATAAGG TCATTACAGC GAGCACTAGA CAAGAGACTC TATCTTCTAG TCCATGGTAC 43761 | |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| .........G TCATTACAGC GAGCACTAGA CAGGAGACTC TATCTTCTAG TCCATGGTAC 397 CACACAAGGT AGTGGAAAGC CTGTCTGGCA TTTCCCTGAA AAAGTTTATG AGTCTGAAGA 43701 |||||| ||| |||||||||| | |||||||| ||| |||||| |||||||||| |||||||||| CACACATGGT AGTGGAAAGC CCGTCTGGCA TTTTCCTGAA AAAGTTTATG AGTCTGAAGA 457 GAATTTGCGC AAGGTAAATA GTACTTATCA GTCCATTTCT ATGCTGATTT CAGTAATTTG 43641 ||| |||||| ||| GAACTTGCGC AAG....... .......... .......... .......... .......... 470 GGTTAGGAAA ATGAAAATAT AAGTTGCAAC TATTTGCAGT GTGCTGAGTC TGCCTTAGAA 43581 | |||||||||| |||| ||||| .......... .......... .......... .........T GTGCTGAGTC TGCCCTAGAA 491 TCTTTCATTG GAGATCTTTC ACATACATAT TTTGTTGGAA ATGCCCCTAT GGGTCATATG 43521 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| TCTTTCATTG GAGATCTTTC ACATACATAT TTTGTTGGAA ACGCCCCTAT GGGTCATATG 551 GTCATGCAAC CCACTGAAGA CAAGAAAATC CCTTCAATCA AGGTATGTAC ATTTTAATTA 43461 ||||| |||| |||||||||| ||||||||| | ||||||| || GTCATACAAC CCACTGAAGA CAAGAAAATT CTGTCAATCA AG........ .......... 593 TTGAAAGTAT TGAAGAAAAA GAGAGTAAAG AAATTCTCTC ATCCCACGGT GAGTGAGGGA 43401 .......... .......... .......... .......... .......... .......... 593 CGGAAGGAGG GAAATTTCCT GATAGCTTCT GCAAATTTTT GTGCTTCTTA TATATTCTAT 43341 .......... .......... .......... .......... .......... .......... 593 ATTTTATTGT GGCAGCGCTT CTTCTTCAAA TCCCAAGTTA TTGCAGCCAA CAAATTTGAT 43281 ||||| |||||||||| |||||||| | |||||| ||| |||||||||| .......... .....CGCTT CTTCTTCAAA TCCCAAGTCA TTGCAGTCAA CAAATTTGAT 638 ATTAGGAAAT GTGATGATTT TGTCTGGGTG ACCAAAGATG AACTGTTGGA ATACTTTCCC 43221 ||||| || | |||||||||| |||||||||| || ||||||| || ||||||| ||||||||| ATTAGAAAGT GTGATGATTT TGTCTGGGTG ACAAAAGATG AATTGTTGGA ATACTTTCCT 698 GAGCAAGCTG AATTCCTGAA CAAGATGATC ATCAGCTGAC GTTAGTTTCT GCTCAAACTT 43161 |||||||||| |||||||||| |||||||||| ||||||||| ||| |||||| |||||||||| GAGCAAGCTG AATTCCTGAA CAAGATGATC ATCAGCTGAT GTTTGTTTCT GCTCAAACTT 758 CAGGCTTCGT AGGATAGC-- G-GAAAT-AG T-T-T--TGA TCTGAAAAAT CCATTTCTTC 43109 ||||||| || |||||||| | | | || | | | ||| |||||||||| ||| ||||| CAGGCTTGGT AGGATAGCTA GCGGTTTGAG TATATCCTGA TCTGAAAAAT CCACTTCTTT 818 CCGCAAATGC AATGGGCTTG GACTGCTGGA GACTGA-TTT -T-TA-TGTC -TCGA-CAG- 43056 ||||||||| ||| ||||| || | ||||| ||| | ||| | || || | | | || CCGCAAATGT AAT-GGCTTT GATTACTGGA GACCAATTTT ATGTACTGGC AGCAAGAAGA 877 TCTGACT--- A---G-CA-- -TGCCATTCA TCAAGTCCTG TAGAATTTTG AACATA-GGA 43007 |||||| | | || ||||||||| |||||| || |||||||||| |||||| ||| CCTGACTGCA ATTTGCCAGT GTGCCATTCA TCAAGTTTTG TAGAATTTTG AACATAGGGA 937 TACC-TAAAT TATGATAGCC TTCTGCCTCA GCTATCACCA ATCCTCTTTG TGAGAAGCTA 42948 |||| ||| | | |||| ||| |||| |||| |||||||||| |||| |||| ||||||||| TACCTTAAGT TGTGATGGCC TTCTATCTCA GCTATCACCA TTCCTATTTG GGAGAAGCTA 997 TGCTAAAAAC TCTGAAATAG TCATGAATTT TAGTATGAAT ATGCTTTTGT AGATGCACGA 42888 |||| | ||| |||||| | | ||||| | || |||||||||| || | |||| ||||||| || TGCTCAGAAC TCTGAACTGG TCATGCAATT TAGTATGAAT ATAC--TTGT AGATGCATGA 1055 TTTCATCTCG CGTCATAAAA TAAACAAAAC AAATTACATG TTGCAGCCTT AA 42836 |||||||||| ||||| ||| |||| ||||| ||||||| || ||| |||||| || TTTCATCTCG TGTCATGAAA TAAATAAAAC AAATTACGTG TTGTAGCCTT AA 1107 hqPGS_C04HBa0127E11.1-_SGN-U316160+ (45499 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 42836) ******************************************************************************** EST sequence 29 +strand 889 n (File: SGN-U335513+) 1 AAGCTGGAGC TCACCGCGGT GGCGGCCGCT CTAGAACTAG TGGATCCCCC GGGCTGCAGG 61 AATTCGGCAC GAGGGAAAAT GCAGAGGTGC TGTTCATCTG CGATAGGTAA ACGATGGTTT 121 TCTTCATTCA ACAATGATAA AATTGTCGCT TCAGTGCTCT TTGAAAGATT ACCGGTAGTG 181 GTACCCAAAA TCGATCCTAC TGTATATGCT TTTCAAGAAT TTTCGTAAGT TTTTCTTTTT 241 TTTCTGTTCA ATTGTTGCAC GAAATCGATC CTTTTTGTAA TCCAATTACA ATGATTTACT 301 TTTAGAGCGA TAAATTCTGG TTCATATAAT AGAATGATCA AAACATTTAC TAGTGTTGAT 361 TTTTTTTTTC GCTTTCTAAA AACTGTGATG GTTAATTAGG GATTAAGGGG TACTCTGATA 421 TGTTTGCTTG CGAAAAATAG TACTCAAAAA CAATAATTAT GCCTCAATTG CATTAGTCAG 481 GTCAAATTAT GAATCTTCAC TATTTTGTAA GTTTGATGAA GTAAATCTAC AAAAGAAAAT 541 AGTTTCTTTT GTCCAAAATT TTGCAGTGGT TTCTAATGCT TAGGAGATAA TGTGTAATGA 601 AGTTAGAATG ATAGGGTATT ATAAATGGGT TTTAAAAGGG AAAAATAAGA GGGATAAAAA 661 AGTGCAAAAG TTCATGAACG AGAGTTCGCG AATGACAATG TAGATGATTT GTTAACGTAA 721 TTGGTGTTTT AGTTGAATGC AGTAATTTTA AGATTAATTT CTTTTATAAG GTTCCGTGGA 781 GGCCGCCATA TTCGCGAGAA TTTCAGAAAG TTTTCTGAAG AATCTGATCC AAGGGGAAAA 841 GGGTGATTTC AAATTGATAT TAACAGCCTC TCAATCTCAG AAGCGATAG Predicted gene structure (within gDNA segment 46852 to 42649): Exon 1 45512 44754 ( 759 n); cDNA 75 833 ( 759 n); score: 0.872 Intron 1 44753 44336 ( 418 n); Pd: 0.750 (s: 0.82), Pa: 0.977 (s: 0.81) Exon 2 44335 44282 ( 54 n); cDNA 834 884 ( 51 n); score: 0.824 MATCH C04HBa0127E11.1- SGN-U335513+ 0.869 813 0.915 C PGS_C04HBa0127E11.1-_SGN-U335513+ (45512 44754,44335 44282) Alignment (genomic DNA sequence = upper lines): GAAAATGCAG AGGTGCTGTT CATCTGCGAT AGGTAAACGA TGGTTTTCTT CATTCAACAA 45453 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATGCAG AGGTGCTGTT CATCTGCGAT AGGTAAACGA TGGTTTTCTT CATTCAACAA 134 TGATAAAATT GTGGCTTCAG TGCTCTTTGA AAGATTACCG GTAGTGGTAC CCAAAATCGA 45393 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATAAAATT GTCGCTTCAG TGCTCTTTGA AAGATTACCG GTAGTGGTAC CCAAAATCGA 194 TCCTACTGTA TATGCTTTTC AAGAATTTTC GTAAGTTTTT TCTTTTTTTC TGTTCAATTG 45333 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||| TCCTACTGTA TATGCTTTTC AAGAATTTTC GTAAGTTTTT CTTTTTTTTC TGTTCAATTG 254 TTGCACGAAA TCGAAGTGTA ATCAATCCCT TTTGTAATCC AATTACAATG ATTTACTTTT 45273 |||||||||| || | |||| | |||||||||| |||||||||| |||||||||| TTGCACGAAA TC-----G-- ----ATCCTT TTTGTAATCC AATTACAATG ATTTACTTTT 303 AGAGCGATAA TTGCTGGTTC GTATAATAGA ATGATCAAAA CATTTACTAG TGTTGATTTT 45213 |||||||||| | ||||||| ||||||||| |||||||||| |||||||||| |||||||||| AGAGCGATAA ATTCTGGTTC ATATAATAGA ATGATCAAAA CATTTACTAG TGTTGATTTT 363 TTTTTTCGCT TTTCAGAAAC TGTGCTGGTT AATTAGGGAT TAAGGGGTAC TTTGATATGT 45153 |||||||||| || | |||| |||| ||||| |||||||||| |||||||||| | |||||||| TTTTTTCGCT TTCTAAAAAC TGTGATGGTT AATTAGGGAT TAAGGGGTAC TCTGATATGT 423 TTGCTTGAGA AAAATAGTGC TAAAAAACAA TAATT-T--- T--A-TGCCT TAGTCAGGTC 45100 ||||||| || |||||||| | | |||||||| ||||| | | | ||| | |||||||||| TTGCTTGCGA AAAATAGTAC TCAAAAACAA TAATTATGCC TCAATTGCAT TAGTCAGGTC 483 AAATTATGAA TCTTCGCTAT TTTGTAAGTT TGATGAAGTA AATCTACGAA AGAAAATAGT 45040 |||||||||| ||||| |||| |||||||||| |||||||||| ||||||| || |||||||||| AAATTATGAA TCTTCACTAT TTTGTAAGTT TGATGAAGTA AATCTACAAA AGAAAATAGT 543 TTCTTTTGTC CAAAATTTTG CAGTGGTTTC TAATGCTTAG GAGATAATGT GTAATGAAGT 44980 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTGTC CAAAATTTTG CAGTGGTTTC TAATGCTTAG GAGATAATGT GTAATGAAGT 603 TGAGAATAAT GAGGTTATA- GAATGGG--T TAGAA-GGAG AAA-ATGA-G AATAAAAAAG 44926 | ||||| || ||| || |||||| | || || ||| ||| | || | ||||||||| T-AGAATGAT AGGGTATTAT AAATGGGTTT TAAAAGGGAA AAATAAGAGG GATAAAAAAG 662 AGCAAAGGTT CATGAACAAG AGTTGGCGAA TGACAATGTA GATGATTGTT TAACGTAATT 44866 ||||| ||| ||||||| || |||| ||||| |||||||||| ||||||| | |||||||||| TGCAAAAGTT CATGAACGAG AGTTCGCGAA TGACAATGTA GATGATTTGT TAACGTAATT 722 GGTG-TTTAG TTGATTGCAG TAATTTTATG ATTAATTTCT TTTATAGGTT TCGTTGGAGG 44807 |||| ||||| |||| ||||| |||||||| | |||||||||| |||||| | | || |||||| GGTGTTTTAG TTGAATGCAG TAATTTTAAG ATTAATTTCT TTTATAAGGT TCCGTGGAGG 782 CAGCAATATC GGCGAGAGTA TCCAGAAAGT TTTCTGAAGA AGTCTGATAC CAGGTACATT 44747 | || |||| |||||| | | |||||||| |||||||||| | |||||| | || CCGCCATATT CGCGAGAAT- TTCAGAAAGT TTTCTGAAGA A-TCTGATCC AAG....... 833 GATGTTGCAT TTTTTGAATT ACACCTTGCC ATTGAATACC TTTCCTTGTG AATTATGTAT 44687 .......... .......... .......... .......... .......... .......... 833 CTTCATTTAT GATGAAATAT TAACTAATGA ATGGTATGAA GAGTGTGCAT AGGATGTATG 44627 .......... .......... .......... .......... .......... .......... 833 AAATAAGTTT AAACATAATA GACCAGTGAA ATTGATTTAG GAGCTGAATA GCACAAAGAG 44567 .......... .......... .......... .......... .......... .......... 833 AGCATAAAAG TCGAAAAGTG ATGAAGATTT TCTGAGCGTT TTTCTTTACT CTAGAAATAG 44507 .......... .......... .......... .......... .......... .......... 833 AGTTTGTCTA AATTGCTTGT GTAGTATTAT TGCCTTTTCA AGCATGTGTT CTTCCTTATT 44447 .......... .......... .......... .......... .......... .......... 833 AGCCATTAAA TATGTGCATG GTTCTTCTTG AACATGCTAT CACATACTGT TCTGTCTAGT 44387 .......... .......... .......... .......... .......... .......... 833 GTCAAATGCC ACATGGTCAG TGACTCGGTT ACATCTATAT GTTACATGCA GGGGAAAA-G 44328 ||||||| | .......... .......... .......... .......... .......... .GGGAAAAGG 842 GTGATTATCA AATTGATTAT AAACCAGCTC CTCGAATCTC AGAAGC 44282 |||||| ||| |||||| ||| || |||| ||| |||||| |||||| GTGATT-TCA AATTGA-TAT TAA-CAGCCT CTC-AATCTC AGAAGC 884 hqPGS_C04HBa0127E11.1-_SGN-U335513+ (45512 44754,44335 44282) ******************************************************************************** EST sequence 28 +strand 923 n (File: SGN-U335512+) 1 GGGAAAGTAG GGNAAGCGNG TTCTTTTAAC GACGAGTACA AGAGGATCTC AACGGAACTT 61 CATCGCGGTG GTTGCCGCTC TAGAACTAGT GGATCCCCCG GGCTGCAGGA ATTCGGCACG 121 AGGGAAAATG CAGAGGTGCT GTTCATCTGC GATAGGTAAA CGATGGTTTT CTTCATTCAA 181 CAATGATAAA ATTGTCGCTT CAGTGCTCTT TGAAAGATTA CCGGTAGTGG TACCCAAAAT 241 CGATCCTACT GTATATGCTT TTCAAGAATT TTCGTAAGTT TTTCTTTTTT TTCTGTTCAA 301 TTGTTGCACG AAATCGATCC TTTTTGTAAT CCAATTACAA TGATTTACTT TTAGAGCGAT 361 AAATTCTGGT TCATATAATA GAATGATCAA AACATTTACT AGTGTTGATT TTTTTTTTCG 421 CTTTCTAAAA ACTGTGATGG TTAATTAGGG ATTAAGGGGT ACTCTGATAT GTTTGCTTGC 481 GAAAAATAGT ACTCAAAAAC AATAATTATG CCTCAATTGC ATTAGTCAGG TCAAATTATG 541 AATCTTCACT ATTTTGTAAG TTTGATGAAG TAAATCTACA AAAGAAAATA GTTTCTTTTG 601 TCCAAAATTT TTGCAGGGTT TCTAATGCTT AGGAAAATAT GTGTAATGAA ATTGAGAATG 661 ATGAGGTTTT AAATGGGTTA AAAAGGGGAA ATTAGAAAGG TTAAAAAGTG CCAAAGGTTC 721 ATTAACCAGA ATTCCGCAAA TGACAATGTA AATGATTGGT TTACCGTAAT GGGGGTTAAT 781 TGAATTGCCG CATTTTAATG AATAAATTCC TTTTTATTGG GTTTCGCTGG AGGGCAGCAA 841 TTTTGGGCGA GAGTTTTTCC AAAAAAGTTT TCTTTAAGAA AATTTTTTTC CCCCGGGGGA 901 AAAGGGGATT TTTTAAAATT TGT Predicted gene structure (within gDNA segment 47942 to 41498): Exon 1 45512 44796 ( 717 n); cDNA 124 845 ( 722 n); score: 0.844 Intron 1 44795 44336 ( 460 n); Pd: 0.000 (s: 0.63), Pa: 0.977 (s: 0) Exon 2 44335 44328 ( 8 n); cDNA 846 853 ( 8 n); score: 0.625 MATCH C04HBa0127E11.1- SGN-U335512+ 0.844 725 0.785 C PGS_C04HBa0127E11.1-_SGN-U335512+ (45512 44796,44335 44328) Alignment (genomic DNA sequence = upper lines): GAAAATGCAG AGGTGCTGTT CATCTGCGAT AGGTAAACGA TGGTTTTCTT CATTCAACAA 45453 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATGCAG AGGTGCTGTT CATCTGCGAT AGGTAAACGA TGGTTTTCTT CATTCAACAA 183 TGATAAAATT GTGGCTTCAG TGCTCTTTGA AAGATTACCG GTAGTGGTAC CCAAAATCGA 45393 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATAAAATT GTCGCTTCAG TGCTCTTTGA AAGATTACCG GTAGTGGTAC CCAAAATCGA 243 TCCTACTGTA TATGCTTTTC AAGAATTTTC GTAAGTTTTT TCTTTTTTTC TGTTCAATTG 45333 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||| TCCTACTGTA TATGCTTTTC AAGAATTTTC GTAAGTTTTT CTTTTTTTTC TGTTCAATTG 303 TTGCACGAAA TCGAAGTGTA ATCAATCCCT TTTGTAATCC AATTACAATG ATTTACTTTT 45273 |||||||||| || | |||| | |||||||||| |||||||||| |||||||||| TTGCACGAAA TC-----G-- ----ATCCTT TTTGTAATCC AATTACAATG ATTTACTTTT 352 AGAGCGATAA TTGCTGGTTC GTATAATAGA ATGATCAAAA CATTTACTAG TGTTGATTTT 45213 |||||||||| | ||||||| ||||||||| |||||||||| |||||||||| |||||||||| AGAGCGATAA ATTCTGGTTC ATATAATAGA ATGATCAAAA CATTTACTAG TGTTGATTTT 412 TTTTTTCGCT TTTCAGAAAC TGTGCTGGTT AATTAGGGAT TAAGGGGTAC TTTGATATGT 45153 |||||||||| || | |||| |||| ||||| |||||||||| |||||||||| | |||||||| TTTTTTCGCT TTCTAAAAAC TGTGATGGTT AATTAGGGAT TAAGGGGTAC TCTGATATGT 472 TTGCTTGAGA AAAATAGTGC TAAAAAACAA TAATT-T--- T--A-TGCCT TAGTCAGGTC 45100 ||||||| || |||||||| | | |||||||| ||||| | | | ||| | |||||||||| TTGCTTGCGA AAAATAGTAC TCAAAAACAA TAATTATGCC TCAATTGCAT TAGTCAGGTC 532 AAATTATGAA TCTTCGCTAT TTTGTAAGTT TGATGAAGTA AATCTACGAA AGAAAATAGT 45040 |||||||||| ||||| |||| |||||||||| |||||||||| ||||||| || |||||||||| AAATTATGAA TCTTCACTAT TTTGTAAGTT TGATGAAGTA AATCTACAAA AGAAAATAGT 592 TTCTTTTGTC CAAAA-TTTT GCAGTGGTTT CTAATGCTTA GGAGATAATG TGTAATGAAG 44981 |||||||||| ||||| |||| |||| ||||| |||||||||| ||| | ||| ||||||||| TTCTTTTGTC CAAAATTTTT GCAG-GGTTT CTAATGCTTA GGAAAATATG TGTAATGAAA 651 TTGAGAATAA TGAGGTTATA GAATGGGTT- AGAAGGAGAA AAT-GAGA-A TAAAAAAGAG 44924 |||||||| | ||||||| || |||||||| | |||| ||| | | || | | |||||| | TTGAGAATGA TGAGGTTTTA -AATGGGTTA AAAAGGGGAA ATTAGAAAGG TTAAAAAGTG 710 -CAAAGGTTC ATGAACAAGA GTT-GGCGAA TGACAATGTA GATGATT-GT TTAACGTAAT 44867 ||||||||| || ||| ||| || || || |||||||||| |||||| || ||| |||||| CCAAAGGTTC ATTAACCAGA ATTCCGCAAA TGACAATGTA AATGATTGGT TTACCGTAAT 770 TGGTGTTTAG TTGATTGCAG TAATTTTATG -ATTAATTTC -TTTTA-TAG GTTTCGTTGG 44810 || ||| | | ||||| | | ||| ||| || |||| | ||||| | | |||||| ||| GGGGGTTAAT TGAATTGCCG CATTTTAATG AATAAATTCC TTTTTATTGG GTTTCGCTGG 830 A-GGCAGCAA TATCGGCGAG AGTATCCAGA AAGTTTTCTG AAGAAGTCTG ATACCAGGTA 44751 | |||||||| | | | AGGGCAGCAA TTTTG..... .......... .......... .......... .......... 845 CATTGATGTT GCATTTTTTG AATTACACCT TGCCATTGAA TACCTTTCCT TGTGAATTAT 44691 .......... .......... .......... .......... .......... .......... 845 GTATCTTCAT TTATGATGAA ATATTAACTA ATGAATGGTA TGAAGAGTGT GCATAGGATG 44631 .......... .......... .......... .......... .......... .......... 845 TATGAAATAA GTTTAAACAT AATAGACCAG TGAAATTGAT TTAGGAGCTG AATAGCACAA 44571 .......... .......... .......... .......... .......... .......... 845 AGAGAGCATA AAAGTCGAAA AGTGATGAAG ATTTTCTGAG CGTTTTTCTT TACTCTAGAA 44511 .......... .......... .......... .......... .......... .......... 845 ATAGAGTTTG TCTAAATTGC TTGTGTAGTA TTATTGCCTT TTCAAGCATG TGTTCTTCCT 44451 .......... .......... .......... .......... .......... .......... 845 TATTAGCCAT TAAATATGTG CATGGTTCTT CTTGAACATG CTATCACATA CTGTTCTGTC 44391 .......... .......... .......... .......... .......... .......... 845 TAGTGTCAAA TGCCACATGG TCAGTGACTC GGTTACATCT ATATGTTACA TGCAGGGGAA 44331 || | .......... .......... .......... .......... .......... .....GGCGA 850 AAG 44328 || GAG 853 hqPGS_C04HBa0127E11.1-_SGN-U335512+ (45512 44796) ******************************************************************************** EST sequence 38 -strand 725 n (File: SGN-U326781-) 1 GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG TATAGTCAAT ACCTGGCCTA 61 CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 121 TAAAATCCAT CCAAGGTTGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 181 GAGATCTAGA AAATCACCTT CGTGATCTAC TGAAAGAACG CAAATACCTT GTAGTGGTTG 241 ATGATATATG GCAAAGAGAA GCATGGGAAA GTTTGAAAAG AGCATTCCCG GATGACAAGA 301 ATGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATAT CGCTGAAAGA GCAGCCGACA 361 GAGGTTTTGT TCATAAACTT CGTTTCCTAA GTCAAGAAGA AAGTTGGGAT CTCTTTCTTA 421 GGAAACTACT TGATGTTCGA GCAATGGTTG CAGAAATGGA AAGTCTAGCT AAGGATATGG 481 TGGAAAAGTG TAGAGGTTTA CCTCTTGCAA TTGTTGTATT GAGCGGACTA CTTTCGCATA 541 AAAAGGATCT AGATGAATGG CAAAAGGTGA AAGATCACCT TTGGAAGAGC ATTAAAGAAG 601 ATAAATCTGT TGAAATCTCC AACATACTAT CACTAAGCTA CAATGATTTG TCAATTGAGC 661 TCAAGCAGTG TTTTCTCTAC TTTGGTATGT TTCCAGAAGA TCGAGTGGTC AAGGCTGAAA 721 ACACA Predicted gene structure (within gDNA segment 47179 to 49113): Exon 1 47789 48513 ( 725 n); cDNA 1 725 ( 725 n); score: 0.971 MATCH C04HBa0127E11.1+ SGN-U326781- 0.971 725 1.000 C PGS_C04HBa0127E11.1+_SGN-U326781- (47789 48513) Alignment (genomic DNA sequence = upper lines): GCAAGACCAC TCTTGCAAGA AACCTCTACA AAAATCCTAA TATATCCTCT CGCTTCCCTA 47848 |||||||||| |||||||||| |||||||||| || |||| |||| | | || |||| GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG TATAGTCAAT ACCTGGCCTA 60 CACACGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 47908 ||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 120 TAAAATCCAT CCAAGGTCGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 47968 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| TAAAATCCAT CCAAGGTTGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 180 GAGATCTAGA AAACCACCTT CGTGATCTAT TGAAAGAACG CAAATACCTT GTGGTGGTTG 48028 |||||||||| ||| |||||| ||||||||| |||||||||| |||||||||| || ||||||| GAGATCTAGA AAATCACCTT CGTGATCTAC TGAAAGAACG CAAATACCTT GTAGTGGTTG 240 ATGATGTCTG GCAAAGAGAA GCATGGGAGA GTTTGAAAAG AGCATTCCCG GATGACAAGA 48088 ||||| | || |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| ATGATATATG GCAAAGAGAA GCATGGGAAA GTTTGAAAAG AGCATTCCCG GATGACAAGA 300 ATGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATAT CGCTGAAAGA GCAGCCGACA 48148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATAT CGCTGAAAGA GCAGCCGACA 360 GAGGTTTTGT TCATAAACTT CGTTTCCTAA GTCAAGAAGA AAGTTGGGAT CTCTTTCTTA 48208 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGTTTTGT TCATAAACTT CGTTTCCTAA GTCAAGAAGA AAGTTGGGAT CTCTTTCTTA 420 GGAAACTACT TGATGTTCGA GCAATGGTTG CAGAAATGGA AAGTCTAGCT AAGGATATGG 48268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAACTACT TGATGTTCGA GCAATGGTTG CAGAAATGGA AAGTCTAGCT AAGGATATGG 480 TGGAAAAGTG TAGAGGTTTA CCTCTTGCAA TTGTTGTATT GAGCGGACTA CTTTCGCATA 48328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAAAGTG TAGAGGTTTA CCTCTTGCAA TTGTTGTATT GAGCGGACTA CTTTCGCATA 540 AAAAGGATCT AGATGAATGG CAAAAGGTGA AAGATCACCT TTGGAAGAGC ATTAAAGAAG 48388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGATCT AGATGAATGG CAAAAGGTGA AAGATCACCT TTGGAAGAGC ATTAAAGAAG 600 ATAAATCTGT TGAAATCTCC AACATACTAT CACTAAGCTA CAATGATTTG TCAATTGAGC 48448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAATCTGT TGAAATCTCC AACATACTAT CACTAAGCTA CAATGATTTG TCAATTGAGC 660 TCAAGCAGTG TTTTCTCTAC TTTGGTATGT TTCCAGAAGA TCGAGTGGTC AAGGCTGAAA 48508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGCAGTG TTTTCTCTAC TTTGGTATGT TTCCAGAAGA TCGAGTGGTC AAGGCTGAAA 720 ACACA 48513 ||||| ACACA 725 hqPGS_C04HBa0127E11.1+_SGN-U326781- (47789 48513) ******************************************************************************** EST sequence 39 -strand 725 n (File: SGN-U326781-) 1 GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG TATAGTCAAT ACCTGGCCTA 61 CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 121 TAAAATCCAT CCAAGGTTGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 181 GAGATCTAGA AAATCACCTT CGTGATCTAC TGAAAGAACG CAAATACCTT GTAGTGGTTG 241 ATGATATATG GCAAAGAGAA GCATGGGAAA GTTTGAAAAG AGCATTCCCG GATGACAAGA 301 ATGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATAT CGCTGAAAGA GCAGCCGACA 361 GAGGTTTTGT TCATAAACTT CGTTTCCTAA GTCAAGAAGA AAGTTGGGAT CTCTTTCTTA 421 GGAAACTACT TGATGTTCGA GCAATGGTTG CAGAAATGGA AAGTCTAGCT AAGGATATGG 481 TGGAAAAGTG TAGAGGTTTA CCTCTTGCAA TTGTTGTATT GAGCGGACTA CTTTCGCATA 541 AAAAGGATCT AGATGAATGG CAAAAGGTGA AAGATCACCT TTGGAAGAGC ATTAAAGAAG 601 ATAAATCTGT TGAAATCTCC AACATACTAT CACTAAGCTA CAATGATTTG TCAATTGAGC 661 TCAAGCAGTG TTTTCTCTAC TTTGGTATGT TTCCAGAAGA TCGAGTGGTC AAGGCTGAAA 721 ACACA Predicted gene structure (within gDNA segment 51228 to 56239): Exon 1 52342 53059 ( 718 n); cDNA 1 723 ( 723 n); score: 0.829 MATCH C04HBa0127E11.1+ SGN-U326781- 0.829 718 0.990 C PGS_C04HBa0127E11.1+_SGN-U326781- (52342 53059) Alignment (genomic DNA sequence = upper lines): GCACGACAAC TCTTGCGAGA AACCTATACA TCAGTTCTAC TATAATCTCT AGCTTCCCTA 52401 ||| ||| || |||||| ||| ||||| |||| ||| || |||| || | | || |||| GCAAGACCAC TCTTGCAAGA AACCTCTACA GAAGTCCTCG TATAGTCAAT ACCTGGCCTA 60 CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACCAT GGATCTCCTT AGGAATATCA 52461 |||||||||| |||||||||| |||||||||| ||||||| || |||||| ||| | || ||||| CACGTGCTTG GATATGTGTT TCTCAAGAGT ACAACACAAT GGATCTTCTT AAGACTATCA 120 TAAAATCCAT CCAAGGTTGC ACCAAGGAAA CTCTAGATTT GTTGGAAAAG ATGACAGAGA 52521 |||||||||| |||||||||| |||| || || |||||| || |||||||||| ||| || | TAAAATCCAT CCAAGGTTGC ACCATGGGAA CTCTAGGATT GTTGGAAAAG ATGGATGAAA 180 TCGATCTAGA AATTTACCTT CGTGATCTTT TAAAAGAACC CAAATACCTT GTGGTGGTCG 52581 |||||||| || | ||||| |||||||| | ||||||| |||||||||| || ||||| | GAGATCTAGA AAATCACCTT CGTGATCTAC TGAAAGAACG CAAATACCTT GTAGTGGTTG 240 ATGATTTATG GCATAGAGAA GCATGGGAAA GTTTGAAACG GGCATTTCCA GATAGCAAGA 52641 ||||| |||| ||| |||||| |||||||||| |||||||| | ||||| || ||| ||||| ATGATATATG GCAAAGAGAA GCATGGGAAA GTTTGAAAAG AGCATTCCCG GATGACAAGA 300 A-GGCAGCAG AGTTATTATT ACTACACGCA AAGAGGATGT CGCTGAAAGA GCAGATAACA 52700 | |||||||| ||| |||||| || || |||| |||||||| | |||||||||| |||| ||| ATGGCAGCAG AGTCATTATT ACCACGCGCA AAGAGGATAT CGCTGAAAGA GCAGCCGACA 360 AAGGTTTTGT CTATAGACTT CGCTTCCTGA GCCAAGAAGA AAGTTGGGAT CTCTTTTGTA 52760 ||||||||| ||| |||| || ||||| | | |||||||| |||||||||| |||||| || GAGGTTTTGT TCATAAACTT CGTTTCCTAA GTCAAGAAGA AAGTTGGGAT CTCTTTCTTA 420 GGAAACTACT TGATGTTCGG GCAATGGTCT CAGCAATGGA AAGGCTAGCA AAGGAAATGG 52820 |||||||||| ||||||||| |||||||| ||| |||||| ||| ||||| ||||| |||| GGAAACTACT TGATGTTCGA GCAATGGTTG CAGAAATGGA AAGTCTAGCT AAGGATATGG 480 TGGACAAGTG TGGAGGTTTA CCTCTTGCAG TTGTTGTATT AAGAGGACTA ATTTCACATA 52880 |||| ||||| | |||||||| ||||||||| |||||||||| || |||||| |||| |||| TGGAAAAGTG TAGAGGTTTA CCTCTTGCAA TTGTTGTATT GAGCGGACTA CTTTCGCATA 540 AAAGGGGGCT AGAAGAATGG GAAAAGGTGA AGTACCACCT TTGGCAAAAC ATT---GAAG 52937 ||| || || ||| |||||| ||||||||| | | ||||| |||| | | | ||| |||| AAAAGGATCT AGATGAATGG CAAAAGGTGA AAGATCACCT TTGGAAGAGC ATTAAAGAAG 600 ACGACTCTAT TGAAGTCTCC TGCATACTAT CATTGAGCTA CAACGATTTG CCAACTGTGC 52997 | | ||| | |||| ||||| |||||||| || | ||||| ||| |||||| ||| || || ATAAATCTGT TGAAATCTCC AACATACTAT CACTAAGCTA CAATGATTTG TCAATTGAGC 660 TCAAGCAGTG TTTCCTGTAC -TTGATATTT TTCCAGAAGA TCATGTGGTC CATGTTGATC 53056 |||||||||| ||| || ||| ||| ||| | |||||||||| || |||||| | | ||| TCAAGCAGTG TTTTCTCTAC TTTGGTATGT TTCCAGAAGA TCGAGTGGTC AAGGCTGAAA 720 ACA 53059 ||| ACA 723 hqPGS_C04HBa0127E11.1+_SGN-U326781- (52342 53059) ******************************************************************************** EST sequence 33 +strand 1043 n (File: SGN-U336521+) 1 TAAGATNCGT GATGGATCCT CGCGCTGCAC CGTGGTGGCG GCCGCTCTAG AACTAGTGGA 61 TCCCCCGGGC TGCAGGAATT CGGCACGAGG AAAGGGATGG TTTTTGGAGA GAATTTTTTT 121 TTTTTACATC TTGTGATAGA AAAGAATTAT TGAAAGAGTT TAGTCATAAG AAGATTTTAC 181 AATAGTTTAA GCACACCTAT ATATCTATTG AAGTTGAATT AAAAACAAAA GGATTGCGGG 241 GTTTTTGATT ATCATTTGAA CTCGAAGTTG TGTAGTGGAA GGTCATCCCC TTGCTCGTTT 301 CGTCTCCAGC TCGCTGCCCC GAAGAAGTTG AGTTTTAGGC TGAATTGTCT TGGCAAGATA 361 AGACGAGTGC CATCAAGTCC ATTTTTGGTT CGTGACATCC GTTTGTATAT TTTGTTTGCA 421 AATATACAAA CAAGGTAAGT ATATACAAAT TCTGCATTTA TACATATAAG AAATTTTCAG 481 AACTATTGTG CTTGTCAATA TACAAACATA GTAATTTATT ACTCCCTTCG TTTCAAAAGG 541 ATGACCTAGT TTGACTTGGA ACAGAGTGTA AGAAAAGAAA GAAAACTCTA ATCTTGTGGT 601 TCTAAATTAA AGTTATGTCA AATGTACCAA AATGCTCTTT AATCTTGTGG TCTTAAATAT 661 GACACGTGGA AAGTTAAAGT TTAAGTGTTG CCAAAAAAAG AAAGGGGTCA TTCTTTTTTA 721 AACAAACTAA AAAGGGAAAT AAGAACATTC TTTTTGAAAC GGAGGGAGTG GATTTATATA 781 TATATATATA TATATATATA TTTATTTATT AATAAATTGA ATATAAATAG CTTGGGGTAG 841 GCTTTTACAA ATTCTAATTT TAAATTAAAG ACTGGATTTT CCAATTTTGG GTTTCCCTAA 901 TTGGTACCCC ACCCTATTGG GGGCTGGTTT TAATGGGAAC ATACTTCAAT AATCAATAGT 961 CTAAAGTTAA AATTTCCAAT TGGCATAAAT TTAAAATAAA TTTTAGGGGG GATTTGGGGT 1021 GGGATCCCCC GGGCATTTTT TTT Predicted gene structure (within gDNA segment 63724 to 52259): Exon 1 63067 62993 ( 75 n); cDNA 421 494 ( 74 n); score: 0.653 Intron 1 62992 59791 (3202 n); Pd: 0.000 (s: 0.64), Pa: 0.720 (s: 0) Exon 2 59790 59785 ( 6 n); cDNA 495 500 ( 6 n); score: 0.667 Intron 2 59784 56520 (3265 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.76) Exon 3 56519 56250 ( 270 n); cDNA 501 769 ( 269 n); score: 0.844 Intron 3 56249 55383 ( 867 n); Pd: 0.000 (s: 0.79), Pa: 0.000 (s: 0.58) Exon 4 55382 55330 ( 53 n); cDNA 770 822 ( 53 n); score: 0.585 MATCH C04HBa0127E11.1- SGN-U336521+ 0.774 404 0.387 C PGS_C04HBa0127E11.1-_SGN-U336521+ (63067 62993,59790 59785,56519 56250,55382 55330) Alignment (genomic DNA sequence = upper lines): AATAGTCAAA ATATATATAT ATATATATAT ATATATATAT ATATATATAA AAAAATGTAA 63008 |||| |||| | || | ||||| | || | | || | ||| |||||| ||| | | | AATATACAAA CAAGGTAAGT ATATACAAAT -TCTGCATTT ATACATATAA GAAATTTTCA 479 AACCTATTAT AATTTATTTA TTTTATTTAT TTAAAAAAAG GTCATATATT TTCATATATT 62948 | ||||| | || GAACTATTGT GCTTG..... .......... .......... .......... .......... 494 ATATGTTTTT CCATATAAGT AATTTTTTTC TCAATATAAT ACATATATTT AACATCTTTC 62888 .......... .......... .......... .......... .......... .......... 494 TTTATTCATA TTATTTATGA AACAATCCAA GTCAAGCACC AATTTCAAAA TCCAAATGTT 62828 .......... .......... .......... .......... .......... .......... 494 AATAGTTTAG ATTAAATCAT ATCAAGTCAA GCACCAATTT CTAAATTTGA ATCTTTATAA 62768 .......... .......... .......... .......... .......... .......... 494 AATGAATATA TTTTCTTCAT TATAAAATAA TATATACTAA CCACTCAAAT AATTTAATTT 62708 .......... .......... .......... .......... .......... .......... 494 AAAGGGGAAA TATTCCAAGA AATTCTCGTA TTTGATTCTA TTTGACACCT AAACCTATCT 62648 .......... .......... .......... .......... .......... .......... 494 ACTCACGACT TTGTCAATTA AACATTTAAA ATTATTAAAA CAGGTTATTT TAAATCTCAG 62588 .......... .......... .......... .......... .......... .......... 494 TGACTGTTGT CCAAGCTTAT GTGGCGTTTA TTCGTTGAAT AGGATGAAAT GTATGGTTAC 62528 .......... .......... .......... .......... .......... .......... 494 ACGCGTTTAA AAGCAAGTGA AGCACATACA TCAATTAAAA ATGTATATGT AATGAAAAAA 62468 .......... .......... .......... .......... .......... .......... 494 ATCCCCTTCT TGGATTTTTC TATATTTTTT TACCGTTACT CTACTTCTTC GTCGTCATAA 62408 .......... .......... .......... .......... .......... .......... 494 GTTATCACTG TCACCATCAC CGTTGCCTTT CCCCCTCCTC TCTCCCCCAC TTCGTTTATC 62348 .......... .......... .......... .......... .......... .......... 494 TTTCTTTAAT CTTCATTCTT TTTTACGATA CTTGTTTTTT ATTTTTCTCT TCTAACACTA 62288 .......... .......... .......... .......... .......... .......... 494 GAGATTAGAT TTATAGAAGA AAAAAAGGAA AAAGAAACAA ATAAGAAAAA ACAAGATTGA 62228 .......... .......... .......... .......... .......... .......... 494 AGTGACAAAT AAATAAAAAA AATTTAGAAG AGAGAAAAAC ATAAAACTTT TGATGAAAAG 62168 .......... .......... .......... .......... .......... .......... 494 ATTATTATTT CCTCCACTTC TCCACTTTTA ATTTTGATGG ATTTTTCGGC CAAACAACTC 62108 .......... .......... .......... .......... .......... .......... 494 GTCACAACTC GTCGATATTG ATTTCTTGAC AATGACTACC TCAACGGCGG CTATTCGTGA 62048 .......... .......... .......... .......... .......... .......... 494 ATGAAGTGGT CGGAGAGATA TTTTTTCTGG TGAATCAATT TTAAAAGACT AATTTTTAAA 61988 .......... .......... .......... .......... .......... .......... 494 ATGAATATGA AATTCTTTTC TTTTTGGAAA CTAAAATATT TGAAATGATA AAAATGATAT 61928 .......... .......... .......... .......... .......... .......... 494 AGCAATTTTT GGTGTATGTT ATCTGGTATG GATAATGATG TGTTATCCAC ATCAGCGCGA 61868 .......... .......... .......... .......... .......... .......... 494 TTGAGAGACA CTCATGTTCA AAGGGATTTA AAATAAGATA TTTTAATAAC TTTAAGTGTT 61808 .......... .......... .......... .......... .......... .......... 494 TCGTTGAAAA AGTCGTGAGT AGAAGGATCT AGATGACAAG TACGAGAGTC TTCCCCGTCA 61748 .......... .......... .......... .......... .......... .......... 494 ATCTACCTAA TTTAAATGGC AAAAAGAAAT ATAAATTAGG ACATGTAAAT GGCAAGCAAA 61688 .......... .......... .......... .......... .......... .......... 494 TGGGAGTGGT ATTTTTGACA ACTTGTTGGG ATGTTTACTA CGTTTATCAT TATGAAGAAA 61628 .......... .......... .......... .......... .......... .......... 494 TTAAAATGAT TCTTAAATTT ATTTAACAAA GCTTACTTTA ACATTTTAAT TTTATAAAAT 61568 .......... .......... .......... .......... .......... .......... 494 TTTTTCAATT AAATAACTTT CAAGTGAATA AAATATTACC TTAATGATTT ACGTGATAAA 61508 .......... .......... .......... .......... .......... .......... 494 CAAAAAAAAT TCGCTCCATA TAAATAGCAA AAAATTGAAG TTGAAAAATG AGTGAATCCC 61448 .......... .......... .......... .......... .......... .......... 494 GACAGGTGAG AAAAAGAGTA TAGAAAATTT CGCCGACAAG CGTTTCTCCG ATAGATTTTG 61388 .......... .......... .......... .......... .......... .......... 494 TTTGTTAATG TGGAAAGGGG GAGAAGATGT ACGAGTTTCA AAATTTTATT TTAAGGAATA 61328 .......... .......... .......... .......... .......... .......... 494 AATTTAAATT TTATTATTTT ATTTTTTGTT AAATAATTTT GATAATAAAT TTTGAAAATA 61268 .......... .......... .......... .......... .......... .......... 494 GTTAATAAAG ATAATTATAA CATGTCAAAT TCATATCACA TATATCAATG ACATTTACTG 61208 .......... .......... .......... .......... .......... .......... 494 TTATAAAAAA AATAATAACG TTTACGATTC AAAATAAAAT TAATGAGGAA ACAAGATATA 61148 .......... .......... .......... .......... .......... .......... 494 ATTCCTAATT TTATTGAATG GAGGATAAAA TTAAGCATAT AATTGTTGTT AATAACTTGA 61088 .......... .......... .......... .......... .......... .......... 494 TGTCTCACTT GAATATTTAA TTAGTGTGAA TTTAATTTAA TTTACTCAAA TTCTTTACAT 61028 .......... .......... .......... .......... .......... .......... 494 AAAATAAAAT AATAAAATTG ATTTATTAAA TAATAATTAA AAAAATTACA AATATACCAT 60968 .......... .......... .......... .......... .......... .......... 494 TTTACAAATT TCAGTTTTTA AAAAATTAAA TGAATTCCGT TCAATGAAGT CATTGGAGTA 60908 .......... .......... .......... .......... .......... .......... 494 CAAACTTTTA ATTTAACAAC GAATAAAATT TTTCTTTTTA TAATAAAGTT TAGTATATTC 60848 .......... .......... .......... .......... .......... .......... 494 AAGTCATTAG TAGCAATAAA TATACTTTTT GTTGAATAAA ATTATGACTT ATATTTTCTT 60788 .......... .......... .......... .......... .......... .......... 494 TACTTGTGAA TTTTGTTTTG AACCGTTAAG GTTAAGGTTC TTCGCGTAAG ATTAATTTGA 60728 .......... .......... .......... .......... .......... .......... 494 AGAAAATGAA GCGGAGAGAG AAACAACAAA AAGAATCGCT AAAGATTTTA TTTATCGAAA 60668 .......... .......... .......... .......... .......... .......... 494 CATGAATTTC GTTAATACAA ACCTAAGCTA TTTATATGAA AAATAGAAAA AGACCAACTC 60608 .......... .......... .......... .......... .......... .......... 494 TAATAAATTT TTGAATACTT AAAAAACTAA AATCGATAAT TTTATAGTTA AGAAACTAAA 60548 .......... .......... .......... .......... .......... .......... 494 ATCATAAAGC ATATAGTAAA TGAACTAAAA CCGACAATTT TTTGAATAGT GGACTAATTT 60488 .......... .......... .......... .......... .......... .......... 494 TGTCATTTTC TCCAAGTACA CCAATAAACT AATGACGTTC TTCTCCGATT TGGAAGAATC 60428 .......... .......... .......... .......... .......... .......... 494 GGAAGCTGCC GGTCGCCGAT AATCAGTGGA TTTTCACCTA TTTGAGGTAA GAATCGAACC 60368 .......... .......... .......... .......... .......... .......... 494 CCATAGCTGT GAATTTAGCT TATAATCTTC ATATATATGA AGTACAGTTG AATTAGGGAT 60308 .......... .......... .......... .......... .......... .......... 494 GAAATTGTGA CGGGATAACT TTGGTAATTG TGGGTTTTCA TTTCAAGCAT ATTTAATTGT 60248 .......... .......... .......... .......... .......... .......... 494 ATTTTGTTGT CCGATTGATA TGCAAATCGA GTGTAAAGTT TCTGTTAGCT TATCATACCA 60188 .......... .......... .......... .......... .......... .......... 494 TTGTCTACTT GTCTGTTTTA AGCCATACGG ACACTTTTTG AGTCTCCACA CTAGTCATGG 60128 .......... .......... .......... .......... .......... .......... 494 AGCATCCACT TAGACTTCTC CATGCAAGTT TCCATGGGGA ACGCATTATT GACATCTAGT 60068 .......... .......... .......... .......... .......... .......... 494 TCCACTCGAT GTACGGAGTC TACCTTGGAG ATCCGATTAA ATTCGGATGA CACACGACAA 60008 .......... .......... .......... .......... .......... .......... 494 GGTCCACTTA GAGGTGGCGC TCCCAACAAG ATTTTTCTCT ATAGCTAGGG CTTGAAGGAG 59948 .......... .......... .......... .......... .......... .......... 494 ACCTCTGGAT AAGGGTGAAA CACTCCCACC AGTACACCAC AACCCATGTT GGTTATTGAC 59888 .......... .......... .......... .......... .......... .......... 494 ATCTATTTGA TAAAGCTACT ATCCTTGTTT GACAACTACA TTGATTAAAG TCTCCACAAT 59828 .......... .......... .......... .......... .......... .......... 494 GGTCAAGATG ACCATTGGTG AAAATGTTTC AATGTAGTCA AGTGTACCCT TTGCCCACCA 59768 ||| | .......... .......... .......... .......TCA ATA....... .......... 500 ACCTAGCCTT GAACCTTGCT ACACTTCCAT GTCCGCTGTG TTTGATCTTG TAAACCCACC 59708 .......... .......... .......... .......... .......... .......... 500 TACAACCCAT TGCCTTCTTT CCTGCAGGTA GATTAGCCGA ATGCTAAGTT TGGTTAGCAT 59648 .......... .......... .......... .......... .......... .......... 500 ATAAAGTCTA AAATTACCGT GTCATGGTTG GTTGCCATGC AGGATTCATA GCTACTCTCT 59588 .......... .......... .......... .......... .......... .......... 500 CATAGTAATT AGGTTCTCTT ATCATAAGAA ATGTTTTGCA TAACCGGCTG GCTATCAGGA 59528 .......... .......... .......... .......... .......... .......... 500 TCCAGTGAGA TGAGGGGAAT TTTTCCAGTG TTGGTGAAAA GGGCACTGAG AGATGGAGAA 59468 .......... .......... .......... .......... .......... .......... 500 GGTTCTTAGA CCTGGTCTTT CAGAAGGGGA AGATAATAGA CAAATTCCAT CAAATGAGGT 59408 .......... .......... .......... .......... .......... .......... 500 GGGGTATTGT GGATCCTACA TCCTAGAGTA TCTCCTAGGA GCAGGTATGT CTAAGTGGCT 59348 .......... .......... .......... .......... .......... .......... 500 ACTAGAAGTG GATGGTGGCA AGGTCTTATC AAAGAAGGAT GATTGATGAG GTTGATAGGA 59288 .......... .......... .......... .......... .......... .......... 500 TGATAGACTT TGATCTGCAA GTAAAGGAGC GTATCGGTAG GACTGGCAGT GTGAAGTATC 59228 .......... .......... .......... .......... .......... .......... 500 AATCTGTTAG AGTCAAGAGG AGCAGTAACA GAAGGTGGAG TGTTCTTGGT GTGCAATTGA 59168 .......... .......... .......... .......... .......... .......... 500 CATTCATCTA AAGTATGTAA TTCTGTATAA CATTGATATC ACACATAGCT GTGGTCTTAC 59108 .......... .......... .......... .......... .......... .......... 500 AAGTATCACA CATTTAGACA AACAATTATT CATAGGTTGA GAGCTTCAAA AAAAATATTT 59048 .......... .......... .......... .......... .......... .......... 500 CATAGGTTGA GAAAAAGCAA CAGGAACATA AAGTGAAACA TGACATGACT CAGTAAATTG 58988 .......... .......... .......... .......... .......... .......... 500 GCACTTCGCG CAGAGAAAGT ATATTATGAA GTTGGGTTTG ATGTCTAAAT TCTGTGTTGC 58928 .......... .......... .......... .......... .......... .......... 500 TTTATGGATT CATTTGACGA ATTGAGTAAT TTTACTGGGA ATTGCTGGAC TTGAACTGTG 58868 .......... .......... .......... .......... .......... .......... 500 ACATTTTTTT TCCTTCACAA AAAACATGAT TTTGGAAGTT TTATTGTTAA CAGTGAGCAT 58808 .......... .......... .......... .......... .......... .......... 500 CTATGTTCTA TGGATTTTAA TTTCTTTTCT CATCCCAAAG AAATCAAAAC AAGATATAAG 58748 .......... .......... .......... .......... .......... .......... 500 AAAAAGAGAG CAAAACAATA GAAAAAACTC CAACGCAGCT TCAAAACTTT TTTTTTTTTG 58688 .......... .......... .......... .......... .......... .......... 500 GTATTCAGTA TCTAAGTGAC ATGTACTTTC TCAACTGACT CTTGTGAAAA ACTGATGTGT 58628 .......... .......... .......... .......... .......... .......... 500 GACATCTTTT TTCTGTTTTG TTGGTATTTT GTAGTGGTAT TTAGTGTCAT TTATGTCATT 58568 .......... .......... .......... .......... .......... .......... 500 GATGCAATCT TGATATTAAT TACTAGCATG AAATGAATGT GACACATCAT TTAATTAGAC 58508 .......... .......... .......... .......... .......... .......... 500 GGAAGATGGA TTAAAGAGGA AGCCATCTGG AAGAAGGCCC TATGTCGAAA ACATTTAAAC 58448 .......... .......... .......... .......... .......... .......... 500 AGTTACACTC TTTAGTGTGT GTTCATCGGA ACTGGGGGTT AACCATGATG TTTTCCAACT 58388 .......... .......... .......... .......... .......... .......... 500 CGATGAGTTT CTCCATATCG AGCAATTAAT AGTCTTAATA ATCAGATTCA ACAGTAACAT 58328 .......... .......... .......... .......... .......... .......... 500 ATTACATAAA ACATTATCTT AAATGTGGAT AAGCAAGATA ACTTACCGCA GACCAATTAA 58268 .......... .......... .......... .......... .......... .......... 500 TTTATGTTAA CACTAGCATT TATGCATAGA ATGCCAAAAC CAATTCTCTT CAAACCAATT 58208 .......... .......... .......... .......... .......... .......... 500 CCACACGCAC AAAAAGAAAT TAAACACTAC TGAAGACATT GACTCTCTTT GGCAGCCCTG 58148 .......... .......... .......... .......... .......... .......... 500 AAATAATCAG CAAAGCGGCA GAAACCTGTT TAATGCTTTT ACAATCCAAC TTCATTTATG 58088 .......... .......... .......... .......... .......... .......... 500 CATATGTCTT CAAGTGCTTG TCAAAAATGG ATCAATAAAA GACAGCTTCT TTTCCCGTTT 58028 .......... .......... .......... .......... .......... .......... 500 TACCCAAATT GTAAGACACT TTTTAACATA ATAACTAGTA GTCAATAAAA ACGAAAAGAT 57968 .......... .......... .......... .......... .......... .......... 500 TTATCAATTA TTTAAAATAA TGATTTAACT ATAATGTTCA AGGCATTATA GTTACATCTA 57908 .......... .......... .......... .......... .......... .......... 500 ATTTTTTTTA TAGATTATGT GGGGAAGGTA CAATCCTCAA AAATATTGTA CATAGTTTTG 57848 .......... .......... .......... .......... .......... .......... 500 AAAATTTTAT AATTTCTCTT CAAAGTTATA TATGTTATTA CTACTGATTC TTGTGTGCTT 57788 .......... .......... .......... .......... .......... .......... 500 ACTGGTACCC GCTTCATAAG GACTTCCTAT AATATAAGCC CAAAGTTTGT GGTTGATGCT 57728 .......... .......... .......... .......... .......... .......... 500 TAATCATGGG AAAGAGGATT TATTTTCTCC TTTTGTCTAC TTTTACAGGG TGTACTTTGA 57668 .......... .......... .......... .......... .......... .......... 500 GGAAGGTGAA TGCTCAAATT CGTCATTCTT TTTAGTGGAA AAATACATCT CGAGATGATG 57608 .......... .......... .......... .......... .......... .......... 500 GAAATTGAAA TTGCGTCCCT TTACCACTAC GTATAAGCTG GTCAAGCTGA TTTTGAGTTG 57548 .......... .......... .......... .......... .......... .......... 500 TTTTCGGTAC AACTTTTAGC TTGAATATTC TGAGTGTCCT CCTTTCTCTC GACTGAGTAG 57488 .......... .......... .......... .......... .......... .......... 500 CTTTTACTCT ACAAGAAATT CATCTGCTAG AGTAGTTCTG CAAAAGAAAA GCAATCAAAA 57428 .......... .......... .......... .......... .......... .......... 500 TAATGGATGA TCGGGTTGTT CTTGACAAGG GTGGAACAAG GAAGTTGCCT CAGTGGATGT 57368 .......... .......... .......... .......... .......... .......... 500 TTGCTACATC TGCTGCTGAT CAAGTAAAGG AAAAAGCCAA AACTGATAAA GTAGACAATA 57308 .......... .......... .......... .......... .......... .......... 500 ATAATACTAC AGAGAAGGAG ATTGTCACTC AGAAACAGAA AAATAGAAGG ATTAAGGATA 57248 .......... .......... .......... .......... .......... .......... 500 AAAAGGAAAC ATTCACTGAG GAGTCGTCCA CTCAGCTTCC AATATGCCAA ACAACAAAAA 57188 .......... .......... .......... .......... .......... .......... 500 GAAGCAGAAG AAAATTAAAC CTACCAAATG ATTATTGTAA TGATGAAAGC ACTTCAATGG 57128 .......... .......... .......... .......... .......... .......... 500 GGAGTGAATG TGACAGCAAG CAAGCAAGTG GTGATGGAGA GGTTCCTATG TTGAGGAGAC 57068 .......... .......... .......... .......... .......... .......... 500 AGAAACAGAA AACGAAGAAT TCCAAGACTG AGAGAGTTGC TGAGATGGAA GAGTCCACAA 57008 .......... .......... .......... .......... .......... .......... 500 CAACAGCAAG TGATAGATGC GGCTTAAGGA AGAGAAAATG CAGCAGATTG AAGGAAAATT 56948 .......... .......... .......... .......... .......... .......... 500 CTAGTGAAGC TGGCCCTAGT TTAAGGAGGC AGAAACAGAA AACAAAGAAT TCCTGGAATG 56888 .......... .......... .......... .......... .......... .......... 500 AGAATTGTGC TGATGTTGAA GAGTCAACAC CAAACACAGA CGATGAGGAT TTGACTGTTG 56828 .......... .......... .......... .......... .......... .......... 500 AAGATCTAAT GCACATGGCG GAAGAGGTGA CCTCTTTAAT TCTCTTGAGG TTTCCTAAAC 56768 .......... .......... .......... .......... .......... .......... 500 AATTCTTCAA GTTTACCATC TAAAGTAATG ATCACATTTG GCCAGAAATG TGGTACCTCA 56708 .......... .......... .......... .......... .......... .......... 500 GATTTTCTTA CTGTTCATTT TTGCAGTATG CTGGTGATGC TGATGAAGAT TTGACCGTTG 56648 .......... .......... .......... .......... .......... .......... 500 AAGATTTGAT GAGCATTGCT AAGGAGGTGA TTATTGATAT CTAAATCTTA TTAATTTTGA 56588 .......... .......... .......... .......... .......... .......... 500 AACATCTGAA TCATTTACTA AAGCTTTAAT TGCTATTAAA AATGAGAGGC ACTACTTCAC 56528 .......... .......... .......... .......... .......... .......... 500 TTGCTATTTA AAAATACAGA AATAAGTGAC TCCCTCAGTT TCAAAAAGAA TGACCTAGTT 56468 || ||| | || ||| | || ||||| ||| || ||||| | |||||||||| ........TA CAAACATAGT AATTTATTAC TCCCTTCGTT TC-AAAAGGA TGACCTAGTT 551 TGACTTGGAA CGGAGTTTAA GAAAAGAAAG AAGACCTTTT TATCTTGTGA TTCTAAATTA 56408 |||||||||| | |||| ||| |||||||||| || | | | | |||||||| |||||||||| TGACTTGGAA CAGAGTGTAA GAAAAGAAAG AA-AAC-TCT AATCTTGTGG TTCTAAATTA 609 AAATTATGTC AAATGTACCA AAATGTCATT TAATCTTGTG GTCTTAAACA TGCCACGTGG 56348 || ||||||| |||||||||| ||||| || |||||||||| |||||||| | || ||||||| AAGTTATGTC AAATGTACCA AAATGCTCTT TAATCTTGTG GTCTTAAATA TGACACGTGG 669 AAAGTTAAAG TTAAAGTGTT GCCAAAAAAG GAAA-GGGTC ATTCTTTTTG AAACAGACTA 56289 |||||||||| || ||||||| ||||||||| |||| ||||| ||||||||| ||||| |||| AAAGTTAAAG TTTAAGTGTT GCCAAAAAAA GAAAGGGGTC ATTCTTTTTT AAACAAACTA 729 AAAA-GAAAA TAGAGTTATT CTTTTTGAAA TGGAGGGAGT ATTAATCTGT GGCATTTGAA 56230 |||| | ||| || ||| |||||||||| ||||||||| AAAAGGGAAA TAAGAACATT CTTTTTGAAA CGGAGGGAGT .......... .......... 769 TGATTTTTAA AATATATGTG GTGTCTTGAG TTATTGTCGT GCTTTTATGT GGGTGAGGCA 56170 .......... .......... .......... .......... .......... .......... 769 GGGGGCGAAT GAATCTCCTC TTCTCTTCTT CTCCTTATTT GTAGCATTAG TTAGTATTCA 56110 .......... .......... .......... .......... .......... .......... 769 CGTAGTATCA TATTCTTTAA TTTTTACTAC TACCTGTTGC TTCATTTGCT TTTTTCATCT 56050 .......... .......... .......... .......... .......... .......... 769 TGCTACTTTG CTCTCGTTAT TTCCCTTCCA ATCATTCTTT GATTACACTT CTTTTGAGCC 55990 .......... .......... .......... .......... .......... .......... 769 GAGGGTAGGG GTAAGGTCTG TGTAGACCCC ACTTGCGAGA TTACATCCGG TAAGTTGTTG 55930 .......... .......... .......... .......... .......... .......... 769 TTGTTGGTGT CTTAAGTGCT CTTGTTGTTT GGTATTAAAA ATTGATACTT TGACTTTTGT 55870 .......... .......... .......... .......... .......... .......... 769 TGTAAATATG AGAATTATTG GTTGTTATTG TATTTTCCAT TTCCTGGCAG TATGTTAATG 55810 .......... .......... .......... .......... .......... .......... 769 AGAATGAGCA AGCTACATCA GGCAAAGGAA AAAGTGGTCC AACGGAGGAT GCTATTTCCA 55750 .......... .......... .......... .......... .......... .......... 769 TGTCAATAGG CTCATTAAGT GAAGTTGACA ATCAATCTTT GAGAAGAGAA ACAAATTTTG 55690 .......... .......... .......... .......... .......... .......... 769 ATTGTATTTC AATTCAAGAG AGAACAATTG AAGATGCTTC TCCTAAGCTT AACATGTCCG 55630 .......... .......... .......... .......... .......... .......... 769 AGAATCCGAC CCAAGACATG TTAGATTTGT TTCTTGGTCC CCTATTGAAG AAAACTCACG 55570 .......... .......... .......... .......... .......... .......... 769 AGGAGAAGAG AGTTGAACTG GTCAGAGAAG AAATGAGTTT AGCTCATGAT CTGAACAAGA 55510 .......... .......... .......... .......... .......... .......... 769 AAACCCAAAG TAATCCTTCT GAGGTTCAGC CACTTATGGT GAAGAAGAAA AGCAGTCTCA 55450 .......... .......... .......... .......... .......... .......... 769 AGGACAAGGT ATCACTATTT CTTGACTGAT ACTTCTGAAG GTAGTTAGGT AGTATATTTG 55390 .......... .......... .......... .......... .......... .......... 769 GAAGAACAAG TTTAGTTAAA TATTAACTTA AACATTTACT TGTCTGCTTA TTAATTCCAT 55330 |||| || | ||| | || | || || | | | | | | | |||| || .......GGA TTTATATATA TATATATATA TATATATATT TATTTATTAA TAAATTGAAT 822 hqPGS_C04HBa0127E11.1-_SGN-U336521+ (56519 56250) ******************************************************************************** EST sequence 14 -strand 646 n (File: SGN-U316620-) 1 TGTAGTTGAT TTCGGAAGGA GATTGTCCGC CCAATCATAA GATTTTATGT GCATTTTCCC 61 AAAGAGAAGC TTGCTGAAAA CTGTCATTCC AGGATGGTTA TGAAGAGGAA TGACTGCTTT 121 TGGTGGTAAG CAAAAGATAC CAATCGAGAA TTTGTCACAT TCATGGAGAT GCAAGTATGT 181 TATTTTAGGA GGTTTATCTG ATACAGTTGA CTTGAAATAT GGCATATTGG GTCTTAAGCC 241 AACATCTGCT TCAGTCATCT TATCTCATAC TCCCTCCATC ACCATTTCAA AAAGGATGGC 301 CTAGTTTGAC TTGGAACGAA TGTTAAGAAA TTAAAGAATA TTTTTAATTT TGTGATTCTA 361 AATTAAAGTT ATATCAAATG TACCAAAATG CCATTTAATC TTGTGGTTTT AAACATGTCA 421 CATGAAAAGT TAAAATTAAA ATTTTGCCGA AAAAGAAAAG GACTCATTCT TTTTAAACAA 481 ACTAAAAGGA AATTAGGCAC ATTCTTTTCG AAACAAAAAC TAAAGTGCCG ATACTTCCCA 541 ATTCCAAAAA AAGTTGTTCC TTTCTTAACC AACAAGACAA TAATTTTGAT GGACTAAAGT 601 GCAGATAAAT TCAACCAAAA TCCATAATAG TTTTAAATCA ATTCAG Predicted gene structure (within gDNA segment 61123 to 52776): Exon 1 59926 59917 ( 10 n); cDNA 269 278 ( 10 n); score: 0.900 Intron 1 59916 59791 ( 126 n); Pd: 0.614 (s: 0), Pa: 0.720 (s: 0) Exon 2 59790 59785 ( 6 n); cDNA 279 284 ( 6 n); score: 0.500 Intron 2 59784 56490 (3295 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.86) Exon 3 56489 56263 ( 227 n); cDNA 285 510 ( 226 n); score: 0.839 Intron 3 56262 54661 (1602 n); Pd: 0.000 (s: 0.74), Pa: 0.369 (s: 0) Exon 4 54660 54651 ( 10 n); cDNA 511 520 ( 10 n); score: 1.000 Intron 4 54650 53991 ( 660 n); Pd: 0.000 (s: 0), Pa: 0.838 (s: 0) Exon 5 53990 53974 ( 17 n); cDNA 521 536 ( 16 n); score: 0.765 MATCH C04HBa0127E11.1- SGN-U316620- 0.839 270 0.418 C PGS_C04HBa0127E11.1-_SGN-U316620- (59926 59917,59790 59785,56489 56263,54660 54651,53990 53974) Alignment (genomic DNA sequence = upper lines): ACTCCCACCA GTACACCACA ACCCATGTTG GTTATTGACA TCTATTTGAT AAAGCTACTA 59867 |||||| ||| ACTCCCTCCA .......... .......... .......... .......... .......... 278 TCCTTGTTTG ACAACTACAT TGATTAAAGT CTCCACAATG GTCAAGATGA CCATTGGTGA 59807 .......... .......... .......... .......... .......... .......... 278 AAATGTTTCA ATGTAGTCAA GTGTACCCTT TGCCCACCAA CCTAGCCTTG AACCTTGCTA 59747 ||| .......... ......TCAC CA........ .......... .......... .......... 284 CACTTCCATG TCCGCTGTGT TTGATCTTGT AAACCCACCT ACAACCCATT GCCTTCTTTC 59687 .......... .......... .......... .......... .......... .......... 284 CTGCAGGTAG ATTAGCCGAA TGCTAAGTTT GGTTAGCATA TAAAGTCTAA AATTACCGTG 59627 .......... .......... .......... .......... .......... .......... 284 TCATGGTTGG TTGCCATGCA GGATTCATAG CTACTCTCTC ATAGTAATTA GGTTCTCTTA 59567 .......... .......... .......... .......... .......... .......... 284 TCATAAGAAA TGTTTTGCAT AACCGGCTGG CTATCAGGAT CCAGTGAGAT GAGGGGAATT 59507 .......... .......... .......... .......... .......... .......... 284 TTTCCAGTGT TGGTGAAAAG GGCACTGAGA GATGGAGAAG GTTCTTAGAC CTGGTCTTTC 59447 .......... .......... .......... .......... .......... .......... 284 AGAAGGGGAA GATAATAGAC AAATTCCATC AAATGAGGTG GGGTATTGTG GATCCTACAT 59387 .......... .......... .......... .......... .......... .......... 284 CCTAGAGTAT CTCCTAGGAG CAGGTATGTC TAAGTGGCTA CTAGAAGTGG ATGGTGGCAA 59327 .......... .......... .......... .......... .......... .......... 284 GGTCTTATCA AAGAAGGATG ATTGATGAGG TTGATAGGAT GATAGACTTT GATCTGCAAG 59267 .......... .......... .......... .......... .......... .......... 284 TAAAGGAGCG TATCGGTAGG ACTGGCAGTG TGAAGTATCA ATCTGTTAGA GTCAAGAGGA 59207 .......... .......... .......... .......... .......... .......... 284 GCAGTAACAG AAGGTGGAGT GTTCTTGGTG TGCAATTGAC ATTCATCTAA AGTATGTAAT 59147 .......... .......... .......... .......... .......... .......... 284 TCTGTATAAC ATTGATATCA CACATAGCTG TGGTCTTACA AGTATCACAC ATTTAGACAA 59087 .......... .......... .......... .......... .......... .......... 284 ACAATTATTC ATAGGTTGAG AGCTTCAAAA AAAATATTTC ATAGGTTGAG AAAAAGCAAC 59027 .......... .......... .......... .......... .......... .......... 284 AGGAACATAA AGTGAAACAT GACATGACTC AGTAAATTGG CACTTCGCGC AGAGAAAGTA 58967 .......... .......... .......... .......... .......... .......... 284 TATTATGAAG TTGGGTTTGA TGTCTAAATT CTGTGTTGCT TTATGGATTC ATTTGACGAA 58907 .......... .......... .......... .......... .......... .......... 284 TTGAGTAATT TTACTGGGAA TTGCTGGACT TGAACTGTGA CATTTTTTTT CCTTCACAAA 58847 .......... .......... .......... .......... .......... .......... 284 AAACATGATT TTGGAAGTTT TATTGTTAAC AGTGAGCATC TATGTTCTAT GGATTTTAAT 58787 .......... .......... .......... .......... .......... .......... 284 TTCTTTTCTC ATCCCAAAGA AATCAAAACA AGATATAAGA AAAAGAGAGC AAAACAATAG 58727 .......... .......... .......... .......... .......... .......... 284 AAAAAACTCC AACGCAGCTT CAAAACTTTT TTTTTTTTGG TATTCAGTAT CTAAGTGACA 58667 .......... .......... .......... .......... .......... .......... 284 TGTACTTTCT CAACTGACTC TTGTGAAAAA CTGATGTGTG ACATCTTTTT TCTGTTTTGT 58607 .......... .......... .......... .......... .......... .......... 284 TGGTATTTTG TAGTGGTATT TAGTGTCATT TATGTCATTG ATGCAATCTT GATATTAATT 58547 .......... .......... .......... .......... .......... .......... 284 ACTAGCATGA AATGAATGTG ACACATCATT TAATTAGACG GAAGATGGAT TAAAGAGGAA 58487 .......... .......... .......... .......... .......... .......... 284 GCCATCTGGA AGAAGGCCCT ATGTCGAAAA CATTTAAACA GTTACACTCT TTAGTGTGTG 58427 .......... .......... .......... .......... .......... .......... 284 TTCATCGGAA CTGGGGGTTA ACCATGATGT TTTCCAACTC GATGAGTTTC TCCATATCGA 58367 .......... .......... .......... .......... .......... .......... 284 GCAATTAATA GTCTTAATAA TCAGATTCAA CAGTAACATA TTACATAAAA CATTATCTTA 58307 .......... .......... .......... .......... .......... .......... 284 AATGTGGATA AGCAAGATAA CTTACCGCAG ACCAATTAAT TTATGTTAAC ACTAGCATTT 58247 .......... .......... .......... .......... .......... .......... 284 ATGCATAGAA TGCCAAAACC AATTCTCTTC AAACCAATTC CACACGCACA AAAAGAAATT 58187 .......... .......... .......... .......... .......... .......... 284 AAACACTACT GAAGACATTG ACTCTCTTTG GCAGCCCTGA AATAATCAGC AAAGCGGCAG 58127 .......... .......... .......... .......... .......... .......... 284 AAACCTGTTT AATGCTTTTA CAATCCAACT TCATTTATGC ATATGTCTTC AAGTGCTTGT 58067 .......... .......... .......... .......... .......... .......... 284 CAAAAATGGA TCAATAAAAG ACAGCTTCTT TTCCCGTTTT ACCCAAATTG TAAGACACTT 58007 .......... .......... .......... .......... .......... .......... 284 TTTAACATAA TAACTAGTAG TCAATAAAAA CGAAAAGATT TATCAATTAT TTAAAATAAT 57947 .......... .......... .......... .......... .......... .......... 284 GATTTAACTA TAATGTTCAA GGCATTATAG TTACATCTAA TTTTTTTTAT AGATTATGTG 57887 .......... .......... .......... .......... .......... .......... 284 GGGAAGGTAC AATCCTCAAA AATATTGTAC ATAGTTTTGA AAATTTTATA ATTTCTCTTC 57827 .......... .......... .......... .......... .......... .......... 284 AAAGTTATAT ATGTTATTAC TACTGATTCT TGTGTGCTTA CTGGTACCCG CTTCATAAGG 57767 .......... .......... .......... .......... .......... .......... 284 ACTTCCTATA ATATAAGCCC AAAGTTTGTG GTTGATGCTT AATCATGGGA AAGAGGATTT 57707 .......... .......... .......... .......... .......... .......... 284 ATTTTCTCCT TTTGTCTACT TTTACAGGGT GTACTTTGAG GAAGGTGAAT GCTCAAATTC 57647 .......... .......... .......... .......... .......... .......... 284 GTCATTCTTT TTAGTGGAAA AATACATCTC GAGATGATGG AAATTGAAAT TGCGTCCCTT 57587 .......... .......... .......... .......... .......... .......... 284 TACCACTACG TATAAGCTGG TCAAGCTGAT TTTGAGTTGT TTTCGGTACA ACTTTTAGCT 57527 .......... .......... .......... .......... .......... .......... 284 TGAATATTCT GAGTGTCCTC CTTTCTCTCG ACTGAGTAGC TTTTACTCTA CAAGAAATTC 57467 .......... .......... .......... .......... .......... .......... 284 ATCTGCTAGA GTAGTTCTGC AAAAGAAAAG CAATCAAAAT AATGGATGAT CGGGTTGTTC 57407 .......... .......... .......... .......... .......... .......... 284 TTGACAAGGG TGGAACAAGG AAGTTGCCTC AGTGGATGTT TGCTACATCT GCTGCTGATC 57347 .......... .......... .......... .......... .......... .......... 284 AAGTAAAGGA AAAAGCCAAA ACTGATAAAG TAGACAATAA TAATACTACA GAGAAGGAGA 57287 .......... .......... .......... .......... .......... .......... 284 TTGTCACTCA GAAACAGAAA AATAGAAGGA TTAAGGATAA AAAGGAAACA TTCACTGAGG 57227 .......... .......... .......... .......... .......... .......... 284 AGTCGTCCAC TCAGCTTCCA ATATGCCAAA CAACAAAAAG AAGCAGAAGA AAATTAAACC 57167 .......... .......... .......... .......... .......... .......... 284 TACCAAATGA TTATTGTAAT GATGAAAGCA CTTCAATGGG GAGTGAATGT GACAGCAAGC 57107 .......... .......... .......... .......... .......... .......... 284 AAGCAAGTGG TGATGGAGAG GTTCCTATGT TGAGGAGACA GAAACAGAAA ACGAAGAATT 57047 .......... .......... .......... .......... .......... .......... 284 CCAAGACTGA GAGAGTTGCT GAGATGGAAG AGTCCACAAC AACAGCAAGT GATAGATGCG 56987 .......... .......... .......... .......... .......... .......... 284 GCTTAAGGAA GAGAAAATGC AGCAGATTGA AGGAAAATTC TAGTGAAGCT GGCCCTAGTT 56927 .......... .......... .......... .......... .......... .......... 284 TAAGGAGGCA GAAACAGAAA ACAAAGAATT CCTGGAATGA GAATTGTGCT GATGTTGAAG 56867 .......... .......... .......... .......... .......... .......... 284 AGTCAACACC AAACACAGAC GATGAGGATT TGACTGTTGA AGATCTAATG CACATGGCGG 56807 .......... .......... .......... .......... .......... .......... 284 AAGAGGTGAC CTCTTTAATT CTCTTGAGGT TTCCTAAACA ATTCTTCAAG TTTACCATCT 56747 .......... .......... .......... .......... .......... .......... 284 AAAGTAATGA TCACATTTGG CCAGAAATGT GGTACCTCAG ATTTTCTTAC TGTTCATTTT 56687 .......... .......... .......... .......... .......... .......... 284 TGCAGTATGC TGGTGATGCT GATGAAGATT TGACCGTTGA AGATTTGATG AGCATTGCTA 56627 .......... .......... .......... .......... .......... .......... 284 AGGAGGTGAT TATTGATATC TAAATCTTAT TAATTTTGAA ACATCTGAAT CATTTACTAA 56567 .......... .......... .......... .......... .......... .......... 284 AGCTTTAATT GCTATTAAAA ATGAGAGGCA CTACTTCACT TGCTATTTAA AAATACAGAA 56507 .......... .......... .......... .......... .......... .......... 284 ATAAGTGACT CCCTCAGTTT CAAAAAGAAT GACCTAGTTT GACTTGGAAC GGAGTTTAAG 56447 ||| ||||||| || | |||||||| |||||||||| | | ||||| .......... .......TTT CAAAAAGGAT GGCCTAGTTT GACTTGGAAC GAATGTTAAG 327 AAAAGAAAGA AGACCTTTTT ATCTTGTGAT TCTAAATTAA AATTATGTCA AATGTACCAA 56387 ||| ||||| | | |||| || ||||||| |||||||||| | |||| ||| |||||||||| AAATTAAAGA ATA-TTTTTA ATTTTGTGAT TCTAAATTAA AGTTATATCA AATGTACCAA 386 AATGTCATTT AATCTTGTGG TCTTAAACAT GCCACGTGGA AAGTTAAAGT TAAAGTGTTG 56327 |||| ||||| |||||||||| | |||||||| | ||| || | |||||||| | |||| | ||| AATGCCATTT AATCTTGTGG TTTTAAACAT GTCACATGAA AAGTTAAAAT TAAAATTTTG 446 CCAAAAAAGG AAAGG-GTCA TTCTTTTTGA AACAGACTAA AAAGAAAATA GAGTTATTCT 56268 || |||||| ||||| ||| |||||||| | |||| ||||| || |||| || | ||||| CCGAAAAAGA AAAGGACTCA TTCTTTTT-A AACAAACTAA AAGGAAATTA GGCACATTCT 505 TTTTGAAATG GAGGGAGTAT TAATCTGTGG CATTTGAATG ATTTTTAAAA TATATGTGGT 56208 ||| | TTTCG..... .......... .......... .......... .......... .......... 510 GTCTTGAGTT ATTGTCGTGC TTTTATGTGG GTGAGGCAGG GGGCGAATGA ATCTCCTCTT 56148 .......... .......... .......... .......... .......... .......... 510 CTCTTCTTCT CCTTATTTGT AGCATTAGTT AGTATTCACG TAGTATCATA TTCTTTAATT 56088 .......... .......... .......... .......... .......... .......... 510 TTTACTACTA CCTGTTGCTT CATTTGCTTT TTTCATCTTG CTACTTTGCT CTCGTTATTT 56028 .......... .......... .......... .......... .......... .......... 510 CCCTTCCAAT CATTCTTTGA TTACACTTCT TTTGAGCCGA GGGTAGGGGT AAGGTCTGTG 55968 .......... .......... .......... .......... .......... .......... 510 TAGACCCCAC TTGCGAGATT ACATCCGGTA AGTTGTTGTT GTTGGTGTCT TAAGTGCTCT 55908 .......... .......... .......... .......... .......... .......... 510 TGTTGTTTGG TATTAAAAAT TGATACTTTG ACTTTTGTTG TAAATATGAG AATTATTGGT 55848 .......... .......... .......... .......... .......... .......... 510 TGTTATTGTA TTTTCCATTT CCTGGCAGTA TGTTAATGAG AATGAGCAAG CTACATCAGG 55788 .......... .......... .......... .......... .......... .......... 510 CAAAGGAAAA AGTGGTCCAA CGGAGGATGC TATTTCCATG TCAATAGGCT CATTAAGTGA 55728 .......... .......... .......... .......... .......... .......... 510 AGTTGACAAT CAATCTTTGA GAAGAGAAAC AAATTTTGAT TGTATTTCAA TTCAAGAGAG 55668 .......... .......... .......... .......... .......... .......... 510 AACAATTGAA GATGCTTCTC CTAAGCTTAA CATGTCCGAG AATCCGACCC AAGACATGTT 55608 .......... .......... .......... .......... .......... .......... 510 AGATTTGTTT CTTGGTCCCC TATTGAAGAA AACTCACGAG GAGAAGAGAG TTGAACTGGT 55548 .......... .......... .......... .......... .......... .......... 510 CAGAGAAGAA ATGAGTTTAG CTCATGATCT GAACAAGAAA ACCCAAAGTA ATCCTTCTGA 55488 .......... .......... .......... .......... .......... .......... 510 GGTTCAGCCA CTTATGGTGA AGAAGAAAAG CAGTCTCAAG GACAAGGTAT CACTATTTCT 55428 .......... .......... .......... .......... .......... .......... 510 TGACTGATAC TTCTGAAGGT AGTTAGGTAG TATATTTGGA AGAACAAGTT TAGTTAAATA 55368 .......... .......... .......... .......... .......... .......... 510 TTAACTTAAA CATTTACTTG TCTGCTTATT AATTCCATGA GAGAATATCT TTATTTTAGA 55308 .......... .......... .......... .......... .......... .......... 510 TTCTTCATAG TAGTTTTCTC TCTGTCTCAT CATTGTACAG AAATTATGAG AACTTGATAT 55248 .......... .......... .......... .......... .......... .......... 510 CCAGTTATAT AAAGAAGGAA TATTTTTCCT TAGAAATGAA TAGACTTGAA AGGAAGAATC 55188 .......... .......... .......... .......... .......... .......... 510 CTCAATAGCT GTGTATTATT TTTTGTCAGC TATATCTACC AAAATGTTAT GTCAGAGTTA 55128 .......... .......... .......... .......... .......... .......... 510 GCAACTATAT CAAAAAGGCA TTATACATAA ATAAACTTAG CCTTAACTGA CAAGTAAACA 55068 .......... .......... .......... .......... .......... .......... 510 CTCAACTTTG AGAGTGCATG TATAGACACC TCAACTTGGT CCTAACTAGC AACTAAACAC 55008 .......... .......... .......... .......... .......... .......... 510 TCCATCTTTT CCTGTGTCTA CTGGATGGGG GATGCATCTG TATAACATTG AATATCATAT 54948 .......... .......... .......... .......... .......... .......... 510 ATAGCAGTGG TCTTACAAGT ATCACACACA TTATTAGACA TACAAGTATT CATAGGTTGA 54888 .......... .......... .......... .......... .......... .......... 510 GAAAAAAGGA CACAGGAACA GAAAATGAAA CATGAAAATG ATACAGCGAA TCAGTGAAAT 54828 .......... .......... .......... .......... .......... .......... 510 AGTTTTTAGT TTTCATGGCT GTTTGACGAA TTGAGTAATT TGCCGGGAAT TGCTGGACTT 54768 .......... .......... .......... .......... .......... .......... 510 GAACTGTGAC ATTTTTTTTC CTTCACAAAA GACATGATTT GGAAGTTTTA TAACAAACCA 54708 .......... .......... .......... .......... .......... .......... 510 TGAGCATCTA CGTTCTATGG ATTTTAATTT CTTTTCTCAT CTCAAAGAAA CAAAAACAAG 54648 ||| ||||||| .......... .......... .......... .......... .......AAA CAAAAAC... 520 ATATAAGAAA AAGAGAGCAA AACACTAGAA AACACTTCAA TGCAGCTTCA AAACTCCTTT 54588 .......... .......... .......... .......... .......... .......... 520 TGGTATTCAG GATCTAAGAG ACATTAACTT TGTCAACTGC CTCTTGTGAA AAATTGATAT 54528 .......... .......... .......... .......... .......... .......... 520 GTGTCATTAT CTTTCTGTTT TGTTATTCTG TTGTGGAATT TGGTGTTGTT TCTGCCATGA 54468 .......... .......... .......... .......... .......... .......... 520 TGCAATCTTG ATGTTAATTA CTAGCATGAA ATGAATGTGA TGCAGCATTT AAGTAGACGG 54408 .......... .......... .......... .......... .......... .......... 520 AAGAGGGATC AAAGAGGGAG CCTTCTGGTT AGCTTAAAGG ATTGCCTATC GAAATCATTT 54348 .......... .......... .......... .......... .......... .......... 520 AGACAGTTAT GCTCTTTAGG GTGTTCATTG GAAGTGGTAG TTACCCACGA TGTTTTCCAA 54288 .......... .......... .......... .......... .......... .......... 520 CTTGTAGAGT TTCTCCATAT TGAGCTATTA ATAGTGTTTA AGTTTATCAA GTTAGTTCTC 54228 .......... .......... .......... .......... .......... .......... 520 TGGGGAGATA ATCAGATTCT ACAGTAACCT ATTACATAAA GCATTATCTT AAATGTGGAT 54168 .......... .......... .......... .......... .......... .......... 520 AAGCAAGATA ACATAGCGTA GAACAATTAA TTAACATATT AACATTGTTT ATGCATAGAA 54108 .......... .......... .......... .......... .......... .......... 520 TCCCAAAAGA ACAGTTCTCT TCCAATACAC ATTAAATAAA ACCAAAACCA AAAATAAATT 54048 .......... .......... .......... .......... .......... .......... 520 ATACATTGAA AAATCAAACC CAAAAAAATA AAAAAAATTG AATGCTGAAA TAATCAGTTA 53988 | | .......... .......... .......... .......... .......... .......TAA 523 AGTGACAGAA ACTT 53974 |||| | || |||| AGTG-CCGAT ACTT 536 hqPGS_C04HBa0127E11.1-_SGN-U316620- (56489 56263) ******************************************************************************** EST sequence 41 +strand 696 n (File: SGN-U327528+) 1 GTCGCCGATA ATCAGTGGAT TTTCACCTAT TTGAGGGTGT ACTTTGAGGA AGGTGAATGC 61 TCAAATTCGT CATTCTTTTT AGTGGAAAAA TACATCTCGA GATGATGGAA ATTGAAATTG 121 CGTCCCTTTA CCACTACGTA TAAGCTGGTC AAGCTGATTT TGAGTTGTTT TCGGTACAAC 181 TTTTAGCTTG AATATTCTGA GTGTCCTCCT TTCTCTCGAC TGAGTAGCTT TTACTCTACA 241 AGAAATTCAT CTGCTAGAGT AGTTCTGCAA AAGAAAAGCA ATCAAAATAA TGGATGATCG 301 GGTTGTTCTT GACAAGGGTG GAACAAGGAA GTTGCCTCAG TGGATGTTTG CTACATCTGC 361 TGCTGATCAA GTAAAGGAAA AAGCCAAAAC TGATAAAGTA GACAATAATA ATACTACAGA 421 GAAGGAGATT GTCACTCAGA AACAGAAAAA TAGAAGGATT AAGGATAAAA AGGAAACATT 481 CACTGAGGAG TCGTCCACTC AGCTTCCAAT ATGCCAAACA ACAAAAAGAA GCAGAAGAAA 541 ATTAAACCTA CCAAATGATT ATTGTAATGA TGAAAGCACT TCAATGGGGA GTGAATGTGA 601 CAGCAAGCAA GCAAGTGGTG ATGGAGAGGT TCCTATGTTG AGGAGACAGA AACAGAAAAC 661 GAAGAATTCC AAGACTGAGA GAGTTGCTGA GATGGA Predicted gene structure (within gDNA segment 61016 to 56409): Exon 1 60416 60382 ( 35 n); cDNA 1 35 ( 35 n); score: 1.000 Intron 1 60381 57680 (2702 n); Pd: 1.000 (s: 0), Pa: 0.947 (s: 1.00) Exon 2 57679 57019 ( 661 n); cDNA 36 696 ( 661 n); score: 1.000 MATCH C04HBa0127E11.1- SGN-U327528+ 1.000 696 1.000 C PGS_C04HBa0127E11.1-_SGN-U327528+ (60416 60382,57679 57019) Alignment (genomic DNA sequence = upper lines): GTCGCCGATA ATCAGTGGAT TTTCACCTAT TTGAGGTAAG AATCGAACCC CATAGCTGTG 60357 |||||||||| |||||||||| |||||||||| ||||| GTCGCCGATA ATCAGTGGAT TTTCACCTAT TTGAG..... .......... .......... 35 AATTTAGCTT ATAATCTTCA TATATATGAA GTACAGTTGA ATTAGGGATG AAATTGTGAC 60297 .......... .......... .......... .......... .......... .......... 35 GGGATAACTT TGGTAATTGT GGGTTTTCAT TTCAAGCATA TTTAATTGTA TTTTGTTGTC 60237 .......... .......... .......... .......... .......... .......... 35 CGATTGATAT GCAAATCGAG TGTAAAGTTT CTGTTAGCTT ATCATACCAT TGTCTACTTG 60177 .......... .......... .......... .......... .......... .......... 35 TCTGTTTTAA GCCATACGGA CACTTTTTGA GTCTCCACAC TAGTCATGGA GCATCCACTT 60117 .......... .......... .......... .......... .......... .......... 35 AGACTTCTCC ATGCAAGTTT CCATGGGGAA CGCATTATTG ACATCTAGTT CCACTCGATG 60057 .......... .......... .......... .......... .......... .......... 35 TACGGAGTCT ACCTTGGAGA TCCGATTAAA TTCGGATGAC ACACGACAAG GTCCACTTAG 59997 .......... .......... .......... .......... .......... .......... 35 AGGTGGCGCT CCCAACAAGA TTTTTCTCTA TAGCTAGGGC TTGAAGGAGA CCTCTGGATA 59937 .......... .......... .......... .......... .......... .......... 35 AGGGTGAAAC ACTCCCACCA GTACACCACA ACCCATGTTG GTTATTGACA TCTATTTGAT 59877 .......... .......... .......... .......... .......... .......... 35 AAAGCTACTA TCCTTGTTTG ACAACTACAT TGATTAAAGT CTCCACAATG GTCAAGATGA 59817 .......... .......... .......... .......... .......... .......... 35 CCATTGGTGA AAATGTTTCA ATGTAGTCAA GTGTACCCTT TGCCCACCAA CCTAGCCTTG 59757 .......... .......... .......... .......... .......... .......... 35 AACCTTGCTA CACTTCCATG TCCGCTGTGT TTGATCTTGT AAACCCACCT ACAACCCATT 59697 .......... .......... .......... .......... .......... .......... 35 GCCTTCTTTC CTGCAGGTAG ATTAGCCGAA TGCTAAGTTT GGTTAGCATA TAAAGTCTAA 59637 .......... .......... .......... .......... .......... .......... 35 AATTACCGTG TCATGGTTGG TTGCCATGCA GGATTCATAG CTACTCTCTC ATAGTAATTA 59577 .......... .......... .......... .......... .......... .......... 35 GGTTCTCTTA TCATAAGAAA TGTTTTGCAT AACCGGCTGG CTATCAGGAT CCAGTGAGAT 59517 .......... .......... .......... .......... .......... .......... 35 GAGGGGAATT TTTCCAGTGT TGGTGAAAAG GGCACTGAGA GATGGAGAAG GTTCTTAGAC 59457 .......... .......... .......... .......... .......... .......... 35 CTGGTCTTTC AGAAGGGGAA GATAATAGAC AAATTCCATC AAATGAGGTG GGGTATTGTG 59397 .......... .......... .......... .......... .......... .......... 35 GATCCTACAT CCTAGAGTAT CTCCTAGGAG CAGGTATGTC TAAGTGGCTA CTAGAAGTGG 59337 .......... .......... .......... .......... .......... .......... 35 ATGGTGGCAA GGTCTTATCA AAGAAGGATG ATTGATGAGG TTGATAGGAT GATAGACTTT 59277 .......... .......... .......... .......... .......... .......... 35 GATCTGCAAG TAAAGGAGCG TATCGGTAGG ACTGGCAGTG TGAAGTATCA ATCTGTTAGA 59217 .......... .......... .......... .......... .......... .......... 35 GTCAAGAGGA GCAGTAACAG AAGGTGGAGT GTTCTTGGTG TGCAATTGAC ATTCATCTAA 59157 .......... .......... .......... .......... .......... .......... 35 AGTATGTAAT TCTGTATAAC ATTGATATCA CACATAGCTG TGGTCTTACA AGTATCACAC 59097 .......... .......... .......... .......... .......... .......... 35 ATTTAGACAA ACAATTATTC ATAGGTTGAG AGCTTCAAAA AAAATATTTC ATAGGTTGAG 59037 .......... .......... .......... .......... .......... .......... 35 AAAAAGCAAC AGGAACATAA AGTGAAACAT GACATGACTC AGTAAATTGG CACTTCGCGC 58977 .......... .......... .......... .......... .......... .......... 35 AGAGAAAGTA TATTATGAAG TTGGGTTTGA TGTCTAAATT CTGTGTTGCT TTATGGATTC 58917 .......... .......... .......... .......... .......... .......... 35 ATTTGACGAA TTGAGTAATT TTACTGGGAA TTGCTGGACT TGAACTGTGA CATTTTTTTT 58857 .......... .......... .......... .......... .......... .......... 35 CCTTCACAAA AAACATGATT TTGGAAGTTT TATTGTTAAC AGTGAGCATC TATGTTCTAT 58797 .......... .......... .......... .......... .......... .......... 35 GGATTTTAAT TTCTTTTCTC ATCCCAAAGA AATCAAAACA AGATATAAGA AAAAGAGAGC 58737 .......... .......... .......... .......... .......... .......... 35 AAAACAATAG AAAAAACTCC AACGCAGCTT CAAAACTTTT TTTTTTTTGG TATTCAGTAT 58677 .......... .......... .......... .......... .......... .......... 35 CTAAGTGACA TGTACTTTCT CAACTGACTC TTGTGAAAAA CTGATGTGTG ACATCTTTTT 58617 .......... .......... .......... .......... .......... .......... 35 TCTGTTTTGT TGGTATTTTG TAGTGGTATT TAGTGTCATT TATGTCATTG ATGCAATCTT 58557 .......... .......... .......... .......... .......... .......... 35 GATATTAATT ACTAGCATGA AATGAATGTG ACACATCATT TAATTAGACG GAAGATGGAT 58497 .......... .......... .......... .......... .......... .......... 35 TAAAGAGGAA GCCATCTGGA AGAAGGCCCT ATGTCGAAAA CATTTAAACA GTTACACTCT 58437 .......... .......... .......... .......... .......... .......... 35 TTAGTGTGTG TTCATCGGAA CTGGGGGTTA ACCATGATGT TTTCCAACTC GATGAGTTTC 58377 .......... .......... .......... .......... .......... .......... 35 TCCATATCGA GCAATTAATA GTCTTAATAA TCAGATTCAA CAGTAACATA TTACATAAAA 58317 .......... .......... .......... .......... .......... .......... 35 CATTATCTTA AATGTGGATA AGCAAGATAA CTTACCGCAG ACCAATTAAT TTATGTTAAC 58257 .......... .......... .......... .......... .......... .......... 35 ACTAGCATTT ATGCATAGAA TGCCAAAACC AATTCTCTTC AAACCAATTC CACACGCACA 58197 .......... .......... .......... .......... .......... .......... 35 AAAAGAAATT AAACACTACT GAAGACATTG ACTCTCTTTG GCAGCCCTGA AATAATCAGC 58137 .......... .......... .......... .......... .......... .......... 35 AAAGCGGCAG AAACCTGTTT AATGCTTTTA CAATCCAACT TCATTTATGC ATATGTCTTC 58077 .......... .......... .......... .......... .......... .......... 35 AAGTGCTTGT CAAAAATGGA TCAATAAAAG ACAGCTTCTT TTCCCGTTTT ACCCAAATTG 58017 .......... .......... .......... .......... .......... .......... 35 TAAGACACTT TTTAACATAA TAACTAGTAG TCAATAAAAA CGAAAAGATT TATCAATTAT 57957 .......... .......... .......... .......... .......... .......... 35 TTAAAATAAT GATTTAACTA TAATGTTCAA GGCATTATAG TTACATCTAA TTTTTTTTAT 57897 .......... .......... .......... .......... .......... .......... 35 AGATTATGTG GGGAAGGTAC AATCCTCAAA AATATTGTAC ATAGTTTTGA AAATTTTATA 57837 .......... .......... .......... .......... .......... .......... 35 ATTTCTCTTC AAAGTTATAT ATGTTATTAC TACTGATTCT TGTGTGCTTA CTGGTACCCG 57777 .......... .......... .......... .......... .......... .......... 35 CTTCATAAGG ACTTCCTATA ATATAAGCCC AAAGTTTGTG GTTGATGCTT AATCATGGGA 57717 .......... .......... .......... .......... .......... .......... 35 AAGAGGATTT ATTTTCTCCT TTTGTCTACT TTTACAGGGT GTACTTTGAG GAAGGTGAAT 57657 ||| |||||||||| |||||||||| .......... .......... .......... .......GGT GTACTTTGAG GAAGGTGAAT 58 GCTCAAATTC GTCATTCTTT TTAGTGGAAA AATACATCTC GAGATGATGG AAATTGAAAT 57597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCAAATTC GTCATTCTTT TTAGTGGAAA AATACATCTC GAGATGATGG AAATTGAAAT 118 TGCGTCCCTT TACCACTACG TATAAGCTGG TCAAGCTGAT TTTGAGTTGT TTTCGGTACA 57537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGTCCCTT TACCACTACG TATAAGCTGG TCAAGCTGAT TTTGAGTTGT TTTCGGTACA 178 ACTTTTAGCT TGAATATTCT GAGTGTCCTC CTTTCTCTCG ACTGAGTAGC TTTTACTCTA 57477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTTAGCT TGAATATTCT GAGTGTCCTC CTTTCTCTCG ACTGAGTAGC TTTTACTCTA 238 CAAGAAATTC ATCTGCTAGA GTAGTTCTGC AAAAGAAAAG CAATCAAAAT AATGGATGAT 57417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGAAATTC ATCTGCTAGA GTAGTTCTGC AAAAGAAAAG CAATCAAAAT AATGGATGAT 298 CGGGTTGTTC TTGACAAGGG TGGAACAAGG AAGTTGCCTC AGTGGATGTT TGCTACATCT 57357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGTTGTTC TTGACAAGGG TGGAACAAGG AAGTTGCCTC AGTGGATGTT TGCTACATCT 358 GCTGCTGATC AAGTAAAGGA AAAAGCCAAA ACTGATAAAG TAGACAATAA TAATACTACA 57297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCTGATC AAGTAAAGGA AAAAGCCAAA ACTGATAAAG TAGACAATAA TAATACTACA 418 GAGAAGGAGA TTGTCACTCA GAAACAGAAA AATAGAAGGA TTAAGGATAA AAAGGAAACA 57237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAGGAGA TTGTCACTCA GAAACAGAAA AATAGAAGGA TTAAGGATAA AAAGGAAACA 478 TTCACTGAGG AGTCGTCCAC TCAGCTTCCA ATATGCCAAA CAACAAAAAG AAGCAGAAGA 57177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACTGAGG AGTCGTCCAC TCAGCTTCCA ATATGCCAAA CAACAAAAAG AAGCAGAAGA 538 AAATTAAACC TACCAAATGA TTATTGTAAT GATGAAAGCA CTTCAATGGG GAGTGAATGT 57117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTAAACC TACCAAATGA TTATTGTAAT GATGAAAGCA CTTCAATGGG GAGTGAATGT 598 GACAGCAAGC AAGCAAGTGG TGATGGAGAG GTTCCTATGT TGAGGAGACA GAAACAGAAA 57057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAGCAAGC AAGCAAGTGG TGATGGAGAG GTTCCTATGT TGAGGAGACA GAAACAGAAA 658 ACGAAGAATT CCAAGACTGA GAGAGTTGCT GAGATGGA 57019 |||||||||| |||||||||| |||||||||| |||||||| ACGAAGAATT CCAAGACTGA GAGAGTTGCT GAGATGGA 696 hqPGS_C04HBa0127E11.1-_SGN-U327528+ (60416 60382,57679 57019) ******************************************************************************** EST sequence 18 +strand 816 n (File: SGN-U329894+) 1 TCGTTATCGA GGGGGGTAAC GGGGGTAGTG GTCTCCAAAT GCCGGCGAAT TATGGGGACT 61 ATTTCATTGG ACCGGGGTTT GAGCAATTGA TCCAGAATTT GGCAGAAAAT GATCCAAACC 121 GATATGGGAC TCCTCCGGCG TCGAGAGCAG CGGTGGAGGG GCTCCCTACC ATCAAAGTTG 181 ATGAGGAATT GATGCGTTCT GAACTGGCAC AGTGTGCTGT TTGTAAGGAT GATTTTGAGA 241 TGGGGTCAGA TGTGATACAG ATGCCTTGTA AGCATGTTTA TCATAAGGAT TGTATCATAC 301 CGTGGCTTGA GTTGCACAGT TCTTGCCCGG TTTGTCGCTA TGAGTTGCCA ACGGATGAGC 361 CTGAGAATGA GAACAGGCAA AGAGACAATG ATGGGGACTC GAGCGGGGAT GGTTCTGCTT 421 CTGGAAGTGG GGGATCAGGG AGAAGGTTTA CTACAATATC ATTGCCATGG CCTTTGGGAA 481 GCTTTGGAGC ATCATCTAGC CAGGGATGAT CCGAGTCTCG TGGGCAGCGG AACAGGGAGT 541 CTAATTAGGT GGTATCCTTG CTTGCAGGTT GTATCATGGA TGACAAAGTT GGAGGAGTTG 601 TTGGGTAGAT AATTAGAAAA TGCTACAAAG GTAAAGGATT AGGTTTCATC TCTTAAAACA 661 TAGATACAGG GTCTACACAA ACCCCAGATA GTATTGCAAG ATGTTTGTCT GAATGTTTTG 721 CATCAGATGT CCAAAGTTTT CATTTATGCT TCATCAATCG CGAATTTTGC GGATTGTTTT 781 AGTCCTTGTG CAGTTGATCT GGAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 62936 to 68725): Exon 1 63536 64083 ( 548 n); cDNA 1 548 ( 548 n); score: 1.000 Intron 1 64084 67721 (3638 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 67722 67974 ( 253 n); cDNA 549 801 ( 253 n); score: 1.000 PPA cDNA 803 816 MATCH C04HBa0127E11.1+ SGN-U329894+ 1.000 801 0.982 C PGS_C04HBa0127E11.1+_SGN-U329894+ (63536 64083,67722 67974) Alignment (genomic DNA sequence = upper lines): TCGTTATCGA GGGGGGTAAC GGGGGTAGTG GTCTCCAAAT GCCGGCGAAT TATGGGGACT 63595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTTATCGA GGGGGGTAAC GGGGGTAGTG GTCTCCAAAT GCCGGCGAAT TATGGGGACT 60 ATTTCATTGG ACCGGGGTTT GAGCAATTGA TCCAGAATTT GGCAGAAAAT GATCCAAACC 63655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCATTGG ACCGGGGTTT GAGCAATTGA TCCAGAATTT GGCAGAAAAT GATCCAAACC 120 GATATGGGAC TCCTCCGGCG TCGAGAGCAG CGGTGGAGGG GCTCCCTACC ATCAAAGTTG 63715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATGGGAC TCCTCCGGCG TCGAGAGCAG CGGTGGAGGG GCTCCCTACC ATCAAAGTTG 180 ATGAGGAATT GATGCGTTCT GAACTGGCAC AGTGTGCTGT TTGTAAGGAT GATTTTGAGA 63775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAGGAATT GATGCGTTCT GAACTGGCAC AGTGTGCTGT TTGTAAGGAT GATTTTGAGA 240 TGGGGTCAGA TGTGATACAG ATGCCTTGTA AGCATGTTTA TCATAAGGAT TGTATCATAC 63835 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGGTCAGA TGTGATACAG ATGCCTTGTA AGCATGTTTA TCATAAGGAT TGTATCATAC 300 CGTGGCTTGA GTTGCACAGT TCTTGCCCGG TTTGTCGCTA TGAGTTGCCA ACGGATGAGC 63895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGCTTGA GTTGCACAGT TCTTGCCCGG TTTGTCGCTA TGAGTTGCCA ACGGATGAGC 360 CTGAGAATGA GAACAGGCAA AGAGACAATG ATGGGGACTC GAGCGGGGAT GGTTCTGCTT 63955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAGAATGA GAACAGGCAA AGAGACAATG ATGGGGACTC GAGCGGGGAT GGTTCTGCTT 420 CTGGAAGTGG GGGATCAGGG AGAAGGTTTA CTACAATATC ATTGCCATGG CCTTTGGGAA 64015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGAAGTGG GGGATCAGGG AGAAGGTTTA CTACAATATC ATTGCCATGG CCTTTGGGAA 480 GCTTTGGAGC ATCATCTAGC CAGGGATGAT CCGAGTCTCG TGGGCAGCGG AACAGGGAGT 64075 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTGGAGC ATCATCTAGC CAGGGATGAT CCGAGTCTCG TGGGCAGCGG AACAGGGAGT 540 CTAATTAGGT AGAGATATAC AAACCATAAT CGTCTTAATT TGATTGTTCA ATTCATTTGA 64135 |||||||| CTAATTAG.. .......... .......... .......... .......... .......... 548 TTCAAATTTA TACACGTGAC TTGCTGATCG AAGCTAAAAT TGTACTTGTT CATCGATTTT 64195 .......... .......... .......... .......... .......... .......... 548 TGTGACTATC TGTTATTTCG TGTAGTTTGT TTGTAGTATT ACTTTGTTGT AGTACTATTA 64255 .......... .......... .......... .......... .......... .......... 548 TGTTCCTACT TGTTGTTTTG TTACTTTGTA TTGTTGATTG TACTTTCAGT ATTTGTTATC 64315 .......... .......... .......... .......... .......... .......... 548 GTACTATTTT GACTTGAGCC GGGGGTCTAT CTGAAACGGC CTCTTTATCT CATCTCTAGG 64375 .......... .......... .......... .......... .......... .......... 548 TAGATATAAG GTTCCGTACA CTCTAACGTC CCATACCCCA CTGTGGGATT ACACTGGATA 64435 .......... .......... .......... .......... .......... .......... 548 TGTTGTAGTT GTTGTACTCT TAGTTGCGCG GACTCTTCAC TTTTGATGTC GCACCTGTCT 64495 .......... .......... .......... .......... .......... .......... 548 CGGATTCTTC AAAATACACT ACTTTTGACG AATTCGACAT GCACCTGTTC GCATTTTTGA 64555 .......... .......... .......... .......... .......... .......... 548 AGAGTCCATG CAACATAGGT TGTACTTGAC GTCAGGAGTT GATATACCCA AAGTTCTGGT 64615 .......... .......... .......... .......... .......... .......... 548 AAATATAAGG AATTCTAGAC TAGGAAATGG GATTAACTGT GGTTATGCAT TTTACTAGGT 64675 .......... .......... .......... .......... .......... .......... 548 AGTTGGAATG TCCTTAACTG TGTTCATGGG ACATCTTAAT CAATCAGCTG TGCCTAATTC 64735 .......... .......... .......... .......... .......... .......... 548 CGAAACTGTT GAGCTCAGTT GTATTCGCTG GCTCGATTTA GGTCCACTTC TACGTCCATG 64795 .......... .......... .......... .......... .......... .......... 548 TTTGATGTTC AGTGTCTAGC TGGTCCTTAC GTGAACCCGA TGAGGTACTT GCTATAAAGG 64855 .......... .......... .......... .......... .......... .......... 548 GACCTGAAGA CTGATTCATA TTTCAAGTTC ATTGGAGATG TGTTTAACAA CTGTTCGATT 64915 .......... .......... .......... .......... .......... .......... 548 TCTTCAGTTT TGTATTTTCA CAAGTCCTCG GACATGTGCG ACCATGCTGA TTAATATAAA 64975 .......... .......... .......... .......... .......... .......... 548 CATTTAAAAA TGATTTCAAT AAGGTTACAA TATGTATGTG ATGAGTTGCA CAAAATTAGA 65035 .......... .......... .......... .......... .......... .......... 548 ATGGGAAAAT GATCGCACAT TTTTTATGGG CATTCTGCTT AGATTGTAAT TCCCACTTAA 65095 .......... .......... .......... .......... .......... .......... 548 TCAACTTAAA TAATAGAATT ATAATGATAG CCTGTTCATT CAGTGGAAGA TCTAGGATTT 65155 .......... .......... .......... .......... .......... .......... 548 GAAGATGGTG GGTGCTCATT TTCTTTAAGA TAAAGTTGCT AACCTAGAAG GGTTACTTTC 65215 .......... .......... .......... .......... .......... .......... 548 TGGAAGCTTT GTAATGTTTT TATAGTTTAG TTAGTTAATG AAAGACAAAT ACATAATTGG 65275 .......... .......... .......... .......... .......... .......... 548 AAACAAGAAA GAAAAAATGA GCAAAAAAGA ATCAGCAGCT AAAGTATACG TATGAAGTAG 65335 .......... .......... .......... .......... .......... .......... 548 TTCTGTTTCC TTTTTTCCAC CAAAAAAAGA TTAATAGTTA GCACCTACTA GGATTCGAAC 65395 .......... .......... .......... .......... .......... .......... 548 CCTCAACAGA ACCCATCAGT GCACTCTTAT TTCAACTCTA GAACCAAAGC ACCCATAAGA 65455 .......... .......... .......... .......... .......... .......... 548 ACTTTTGGTT TTTGTCTGCT CGCGAGTAGA TTATATTAGT TTTACAGATT TTCTTTATAT 65515 .......... .......... .......... .......... .......... .......... 548 ATACACAAAA TTCTCATCGG GGGCAATGGG GGCTCGAGCA CCGATAAACT ACACGTGTAG 65575 .......... .......... .......... .......... .......... .......... 548 TGGGTGTGTC CCTGTGTTCA TTTGCTTTTG AAGATAGATT AACGGAATCT CTTTTCTTTC 65635 .......... .......... .......... .......... .......... .......... 548 TTTCAAATTT GCACTTTATT TAAAGAGTAT ATTAAGGATA GGAAGAGACA TTATTATCAT 65695 .......... .......... .......... .......... .......... .......... 548 TTTTAATTAT AAAATATCTT TTTCCTAGTT TGCCACGTCC CAAAAAAAAA TCTTTCCTTG 65755 .......... .......... .......... .......... .......... .......... 548 CTTTATGTTA CATTAATTGA ATACATTTAC CATCCTCTTT AGTCGTTAAT ATATAACCCA 65815 .......... .......... .......... .......... .......... .......... 548 TAGATACACT TGCACACACG TTCCACAATA TATAATTTAA CTCTCATTTA ATTATGCAAA 65875 .......... .......... .......... .......... .......... .......... 548 ATGTTCATAT TTAATGGAGT AGCCTTAATT GTGAAAATAT AATGTGTTCA CATTTTGTAC 65935 .......... .......... .......... .......... .......... .......... 548 AAGAACATTA TTGCAATAGT TTTTAAGGGG TGAAATAATC TTTCAACTTT TAACTTTGGG 65995 .......... .......... .......... .......... .......... .......... 548 GCTTCCACTT ATGGAATAGT GTGGTGATTA ATCCCATATA TGCTTGTATT CTATGCATAG 66055 .......... .......... .......... .......... .......... .......... 548 ACCAACTGAT AAAGTTATTA GCATATGTAG ATATGTAGCA CAACCTAAGT TGCTTTGACT 66115 .......... .......... .......... .......... .......... .......... 548 CTTCGCTTTC GGTGCCAAAA CCGTGTCGAG ACGACATGGG CGTGGGTCTG GGCTGGGATA 66175 .......... .......... .......... .......... .......... .......... 548 AGTACCTGAT CTGGTCAACT AGGTTTGGGT ACTTTGACCA AATTCGAGGG AAATTTTTTG 66235 .......... .......... .......... .......... .......... .......... 548 GATAGATCCA ATGATTTCTG TCCCTTTTCT TTTATCTCAT TCCAAGATTC TCCTCTTGAT 66295 .......... .......... .......... .......... .......... .......... 548 CATTATTCAC TCCTTGAGTT TTCCACATAA TATCTCATTA TTTTGGTTTT ATAACTCTTA 66355 .......... .......... .......... .......... .......... .......... 548 TGTTTAGCCA AATCCCCGCA CCCTGTATCC ACACATGGAT CCGTATCCCC GAACTTAAAA 66415 .......... .......... .......... .......... .......... .......... 548 ATTTAGGTCA TAGAGGATCT GATCTCTAGA TCTGCACCCT TATCGGATAC CCGCACCCGA 66475 .......... .......... .......... .......... .......... .......... 548 GCGACTTAGA GTGCAACTAC TATTAATTGC TGGACAAACT TTCTCACTCT ACATGTGTGA 66535 .......... .......... .......... .......... .......... .......... 548 TTTTGAACTG CATGTGTAGT TGTTAAATGT CTTTGCAGAT AACGTTCAGT GGCAGAACTA 66595 .......... .......... .......... .......... .......... .......... 548 GTATTTAGTT TATGCTTGTA TGTTGATAAC TGTGCGACTA CAAGGGCATT TTACAACATA 66655 .......... .......... .......... .......... .......... .......... 548 ACACATGTTC TATTTGTATG AAATTATTTG CATTTGTCTT TATATGTACA TGCAAATACT 66715 .......... .......... .......... .......... .......... .......... 548 TAGCCATCAC AATGTGTATG ATGCCATTTC TGGAAACAAG GGACCAAATC TATAAAATTG 66775 .......... .......... .......... .......... .......... .......... 548 GTCAAATGTT GGAAAGAGGA GGTTATCCCG GTATTTTTAT CCGTGGAAAG CCCAGAAAAG 66835 .......... .......... .......... .......... .......... .......... 548 TGACCGACTA GAGCAGGGCC CTATTGATAA ATGTAAGGAA GTGTTTATGA GCCCTAGCAA 66895 .......... .......... .......... .......... .......... .......... 548 AAGCCGTAGC CCTTTAATTG TGTCGGGGAA TCGGCCTTCT TTAGTCAAAG GATCTAATTC 66955 .......... .......... .......... .......... .......... .......... 548 CCATGTATTT CCAAGGTTAT TGATGGTAGA GTTATTGCAA CTTATGCCTT TGTTGAGCTC 67015 .......... .......... .......... .......... .......... .......... 548 TTAGATGCGA GATTGTACAT CTTGTCAGTC TTCTTCATTT TGTGCACTTT GCTGGTTTTT 67075 .......... .......... .......... .......... .......... .......... 548 GGTTTGTGAT GGCTTTTAAT GATGTTTCAC CATTGAATTC TAAAGTTTTA TATGGGTCAA 67135 .......... .......... .......... .......... .......... .......... 548 ATAGGCAGGT TGGACTAAAT TTGGGTGGGT TAAGCAGGTT GGATCAGTAA GCAAATTGGT 67195 .......... .......... .......... .......... .......... .......... 548 CATAGCCAAT TTATCATATC TAATCTCCCT TTCAATTTTA AGGATTTCAT GAATGATGTC 67255 .......... .......... .......... .......... .......... .......... 548 ACTCAATTGC TCTGCTGATC TTCCTTCTGG ATGCTCTTGA GAAGTAGTTG AAAATGTTGC 67315 .......... .......... .......... .......... .......... .......... 548 ATTAGATTGT AAATAGTCCA AAAGTAGTTC CACTTCTTGC TAGATTCCTT GGTCCTTGGG 67375 .......... .......... .......... .......... .......... .......... 548 GTGAAATAGG ACACACTTTT GCCTTTTGCT CCTTCTTGAT GTATGTATCT CACACCTACA 67435 .......... .......... .......... .......... .......... .......... 548 TAGTACTGTA AACATCTATG TAGTATCTTT TCTGATGAAA AGAAATGGTA CTACTTCTTG 67495 .......... .......... .......... .......... .......... .......... 548 ATCTTTCTCT TGTAAAGTAA TAATTAGGTA ATATTTCATG CTCTTTATTG GTACTTCTGT 67555 .......... .......... .......... .......... .......... .......... 548 TTGATGTTCT ATGTTATGTT GATCATACAC TTCAATTGTC AACTCTTTCC TACATTCATT 67615 .......... .......... .......... .......... .......... .......... 548 GCTGACATCC AGAGATGTTA CAAATTTGAT TTTGATTTCG TAGATACAAA CATGGTATAC 67675 .......... .......... .......... .......... .......... .......... 548 CACTTTGAAA TGTATTTTGA TCATTAATGA TTTCTCTGTT TTACAGGTGG TATCCTTGCT 67735 |||| |||||||||| .......... .......... .......... .......... ......GTGG TATCCTTGCT 562 TGCAGGTTGT ATCATGGATG ACAAAGTTGG AGGAGTTGTT GGGTAGATAA TTAGAAAATG 67795 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGGTTGT ATCATGGATG ACAAAGTTGG AGGAGTTGTT GGGTAGATAA TTAGAAAATG 622 CTACAAAGGT AAAGGATTAG GTTTCATCTC TTAAAACATA GATACAGGGT CTACACAAAC 67855 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACAAAGGT AAAGGATTAG GTTTCATCTC TTAAAACATA GATACAGGGT CTACACAAAC 682 CCCAGATAGT ATTGCAAGAT GTTTGTCTGA ATGTTTTGCA TCAGATGTCC AAAGTTTTCA 67915 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAGATAGT ATTGCAAGAT GTTTGTCTGA ATGTTTTGCA TCAGATGTCC AAAGTTTTCA 742 TTTATGCTTC ATCAATCGCG AATTTTGCGG ATTGTTTTAG TCCTTGTGCA GTTGATCTG 67974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTTATGCTTC ATCAATCGCG AATTTTGCGG ATTGTTTTAG TCCTTGTGCA GTTGATCTG 801 hqPGS_C04HBa0127E11.1+_SGN-U329894+ (63536 64083,67722 67974) ******************************************************************************** EST sequence 17 +strand 811 n (File: SGN-U319029+) 1 ACTACTATTT TTACATACTA TTTGTTTTTG TTTTCTACTT TGTTAGGCTC ATTCTCTTGC 61 TTTACTTTAC AAGAGTGGTG AATCTTTGAT TTTGTTAAGT GTTTTGACAT ATTTGTTGTA 121 TTGGGGCTCT GTTTTTTTTC TCCTATGAAT AGAGCTTTTT CTATTACTTG AAACTTCAAC 181 TGAAGCTGCT TTCTTTGTTT GGGGTTTTGT TTAATTGAGC TCTGTTTTCC AGAGCTTGGT 241 GAATTTGTTG TTTTTTTCTT TGTTGGGGTT TGCTCAATTC AGCTCATAAA TCCCATATTA 301 CTACTCTATT TGGACTTGAT TTTCTATTAT TTGTTGTTTT TTTCTTTGTT GGGGTTTGCT 361 CAATTCAGCT CACAATTCCC GTATTAGTAC TCTATTTTGG ATTTGATTTT CGATTATTGT 421 TGGGTTTTGT TTGTTGATAA ATCCTAGTAA TTTTCCACCA CTACCGTTTT TGCTGCTAGT 481 GTTTTGAGCT TCTAATGTCG ACGTCTGCAG AGGGAAATGG AGCTATAATT GATCCTCAGA 541 GGCAACAACA ACAGGCGCCT ACTGGGGTTG GTACAAATGG TGCTTTAACA GTGAAAAAAC 601 CGCCGGTAAA AGACCGGCAT AGTAAGGTTG ATGGTAGAGG AAGACGTATA AGGATGCCAA 661 TTGTATGTGC GGCAAGAGTT TTTCAGCTTA CTCGTGAATT GGGTCATAAA TCCGATGGAC 721 AAACTATTGA ATGGCTGCTT CGTCAAGCTG AGCCTTCAAT TATAGCTGCT ACTGGTACTG 781 GTACTATTCC TGCTAGTTTC TCGACTGTAT C Predicted gene structure (within gDNA segment 76736 to 80142): Exon 1 78189 78205 ( 17 n); cDNA 82 99 ( 18 n); score: 0.735 Intron 1 78206 78786 ( 581 n); Pd: 0.539 (s: 0), Pa: 0.000 (s: 0.78) Exon 2 78787 78886 ( 100 n); cDNA 100 192 ( 93 n); score: 0.860 Intron 2 78887 78916 ( 30 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0.84) ?? Exon 3 78917 79532 ( 616 n); cDNA 193 811 ( 619 n); score: 0.972 MATCH C04HBa0127E11.1+ SGN-U319029+ 0.957 733 0.904 C PGS_C04HBa0127E11.1+_SGN-U319029+ (78189 78205,78787 78886,78917 79532) Alignment (genomic DNA sequence = upper lines): ATCTTAG-TT TAGTTAAGGC GTGTCTCATG AATTTCGGTC ATACTCATGC CAATAAAAAT 78247 ||||| | || | |||||| ATCTTTGATT TTGTTAAG.. .......... .......... .......... .......... 99 GAATTGAAAT ATGTATTATC AGTTAAGATC AAGTTAAAAA ACATACATTT TCAAAGTTGG 78307 .......... .......... .......... .......... .......... .......... 99 AGTTTTTTCG TACATCCAAA GAAAGTGACC GATAAAAATT ATGATATAGT GATGAGTTAC 78367 .......... .......... .......... .......... .......... .......... 99 TCATTCGTTC TTAATTAAGA GAGCGCAAAT TCAAATTTAA TCGAACGTCG ACCGACCGAC 78427 .......... .......... .......... .......... .......... .......... 99 GAAAAGAAAC CACGGAAAGA GAAGTGTGAA AAATGGAAAG AGATGGTGAA AATTTTTGTG 78487 .......... .......... .......... .......... .......... .......... 99 TGAATGTGAA GATTGAAGAG AGAGAGAGAG AGGGGAGTGA GCGCGTGAAA GAGGGTAGTG 78547 .......... .......... .......... .......... .......... .......... 99 GGTACTGTAC TGGATTGCTA GCAGGGATGA GCTGTGAATA TATGTGTAAG AGAGTAGTAC 78607 .......... .......... .......... .......... .......... .......... 99 TAATGTCCCC ACCACCCATG TGACCTTCTT CCTGTCACCA CCAGTTCCTG CTTCTCAATC 78667 .......... .......... .......... .......... .......... .......... 99 ATTAGTCCTA TTCCCCCCTC CCCCTCCATT GTTGTATCTC TACTATTTTT ACATACTATT 78727 .......... .......... .......... .......... .......... .......... 99 TGTTTTTTGG TTCTACTCTC ATTCTCTTGC TATACTTTAC AAGAGTGGTG GATCTTGTAT 78787 | .......... .......... .......... .......... .......... .........T 100 TTTTTTACAT ATTTGTTGTT TTGGGGCTCT GTTTTTTTTT TTTTTGCTTC CATGAATCGA 78847 |||| |||| ||||||||| |||||||||| | ||| ||||| || | |||||| || GTTTTGACAT ATTTGTTGTA TTGGGGCTCT G------TTT TTTTT-CTCC TATGAATAGA 153 GCTTTTTCTA TTACTTGAAA CTTCAACTGA ACCTGCTTTA TTGATTTGTA AAAGTTTTTT 78907 |||||||||| |||||||||| |||||||||| | ||||||| GCTTTTTCTA TTACTTGAAA CTTCAACTGA AGCTGCTTT. .......... .......... 192 TTCTTCTTT- T--GTTTGGG GTTTTGTTTA ATTGAGCTCT GTTTTCCAGA GCTTGGTGAA 78964 | ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........C TTTGTTTGGG GTTTTGTTTA ATTGAGCTCT GTTTTCCAGA GCTTGGTGAA 243 TTTGTTGTTT TTCTTCTTTG TTGGGGTTTG CTCAATTCAG CTCATAAATC CCATATTGGT 79024 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| ||||||| | TTTGTTGTTT TT-TTCTTTG TTGGGGTTTG CTCAATTCAG CTCATAAATC CCATATTACT 302 GCTCTATTTG GACCTGATTT TCAATTATTT GTTG-TTTTT TATTTGTTGG GGTTTGCTCA 79083 ||||||||| ||| |||||| || ||||||| |||| ||||| | |||||||| |||||||||| ACTCTATTTG GACTTGATTT TCTATTATTT GTTGTTTTTT TCTTTGTTGG GGTTTGCTCA 362 ATTCAGCTCA CAATTCCCGT ATTAGTACTC TATTTTGGAT TTGATTTTCG ATTATTGTTG 79143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCAGCTCA CAATTCCCGT ATTAGTACTC TATTTTGGAT TTGATTTTCG ATTATTGTTG 422 GGTTTTGTTT GTTGATAAAT CCTAGTAATT TTCCACCACT ACCGTTTTTG CTGCTAGTGT 79203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTTGTTT GTTGATAAAT CCTAGTAATT TTCCACCACT ACCGTTTTTG CTGCTAGTGT 482 TTTGAGCTTC TAATGTCGAC GTCTGCAGAG GGAAATGGAG CTATAATTGA TCCTCAGAGG 79263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAGCTTC TAATGTCGAC GTCTGCAGAG GGAAATGGAG CTATAATTGA TCCTCAGAGG 542 CAACAACAAC AGGCGCCTAC TGGGGTTGGT ACAAATGGTG CTTTAACAGT GAAAAAACCG 79323 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAACAAC AGGCGCCTAC TGGGGTTGGT ACAAATGGTG CTTTAACAGT GAAAAAACCG 602 CCGGTAAAAG ACCGGCATAG TAAGGTTGAT GGTAGAGGAA GACGTATAAG GATGCCAATT 79383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGTAAAAG ACCGGCATAG TAAGGTTGAT GGTAGAGGAA GACGTATAAG GATGCCAATT 662 GTATGTGCGG CAAGAGTTTT TCAGCTTACT CGTGAATTGG GTCATAAATC CGATGGACAA 79443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGTGCGG CAAGAGTTTT TCAGCTTACT CGTGAATTGG GTCATAAATC CGATGGACAA 722 ACTATTGAAT GGCTGCTTCG TCAAGCTGAG CCTTCAATTA TAGCTGCTAC TGGTACTGGT 79503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTATTGAAT GGCTGCTTCG TCAAGCTGAG CCTTCAATTA TAGCTGCTAC TGGTACTGGT 782 ACTATTCCTG CTAGTTTCTC GACTGTATC 79532 |||||||||| |||||||||| ||||||||| ACTATTCCTG CTAGTTTCTC GACTGTATC 811 hqPGS_C04HBa0127E11.1+_SGN-U319029+ (78787 78886,78917 79532) ******************************************************************************** EST sequence 2 +strand 849 n (File: SGN-U322624+) 1 TACTGCTGTG GTCCCACAGC TGGTTTTGGG CTGTTCCAGC TAGGCNTGAT TTGGTCAAAT 61 TTGGAGCTTN GCGGCGGCAC CGCCACCTGA AATGATGGTG CCGACCTCCG CGGCTGCAGC 121 AGCTGCAGCC GCGGCAGCGT TAAGTTCGCA GAGTTCTAGA TTCTTTCAGC AGCAGATGGG 181 TGAGGCTTCA GCTGCTAGAG TTGGGAATTA CTTACCAATG ACTCAAGGGC ATCTCAATTT 241 GCTAGCTTCT CTATCAGGTC CTCCACAGCC CTCTTCCGGG AGAAGAGACG ACGACGGACG 301 TTGAAGATAT GATTATTGTT ATTGTTATTG TTATCGTTAT TGTTGTTAAT ATATCGTATA 361 AATGTGTTTT AATGTTCTTG TTTGTGTTAG ATGAGAAATT TGTTGCTAGG TTCTAGTGAG 421 TGAGAAATGA ACTAGGGGCT TGTTCAATTT CATGAATTAT TGCTAGGATT AGGTTTGTTT 481 GCTATATCTC ATTTGTCAAG AGTTTACGTT CACCGAGTTT TGGTGTTGTA AGCTGTGGGA 541 CGATAACACG AAACACAAGC ATCAGGGGAA GTTGTTGCTT GTGATGATGA ATTTGGTGGG 601 GTTTGTTCTG TTGTTTGCAG ACCTCACAAT AAGCTGCTTT GATCACATTG TAACAAGATA 661 TAATAGGGGA TCAGTGTGGA CTATGAAAAC CTGTAGTTCC ACATGAATGT TTTGTAAGGA 721 AACCATGGCG GTTTCCGTTG AATTCAATTC TGTAATTTGT TGAAACTATA TCAGTTGTGA 781 GCTTAAACTT TCCTACTCAA AAGATTGCTA TGGACTTCAA TTTATTACTG AAAAAAAAAA 841 AAAAAAAAA Predicted gene structure (within gDNA segment 78672 to 81351): Exon 1 79710 80541 ( 832 n); cDNA 1 829 ( 829 n); score: 0.993 PPA cDNA 831 849 MATCH C04HBa0127E11.1+ SGN-U322624+ 0.993 832 0.980 C PGS_C04HBa0127E11.1+_SGN-U322624+ (79710 80541) Alignment (genomic DNA sequence = upper lines): TACTGCTGTG GGTCCCACAG CTGGGTTTTG GGCTGTTCCA GCTAGGCCTG ATTTTGGTCA 79769 ||||||||| |||||||||| || ||||||| |||||||||| ||||||| || | |||||||| TACTGCTGT- GGTCCCACAG CT-GGTTTTG GGCTGTTCCA GCTAGGCNTG A-TTTGGTCA 57 AATTTGGAGC TTTGCGGCGG CACCGCCACC TGAAATGATG GTGCCAACCT CCGCGGCTGC 79829 |||||||||| || ||||||| |||||||||| |||||||||| ||||| |||| |||||||||| AATTTGGAGC TTNGCGGCGG CACCGCCACC TGAAATGATG GTGCCGACCT CCGCGGCTGC 117 AGCAGCTGCA GCCGCGGCAG CGTTAAGTTC GCAGAGTTCT AGATTCTTTC AGCAGCAGAT 79889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGCTGCA GCCGCGGCAG CGTTAAGTTC GCAGAGTTCT AGATTCTTTC AGCAGCAGAT 177 GGGTGAGGCT TCAGCTGCTA GAGTTGGGAA TTACTTACCA ATGACTCAAG GGCATCTCAA 79949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGAGGCT TCAGCTGCTA GAGTTGGGAA TTACTTACCA ATGACTCAAG GGCATCTCAA 237 TTTGCTAGCT TCTCTATCAG GTCCTCCACA GCCCTCTTCC GGGAGAAGAG ACGACGACGG 80009 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCTAGCT TCTCTATCAG GTCCTCCACA GCCCTCTTCC GGGAGAAGAG ACGACGACGG 297 ACGTTGAAGA TATGATTATT GTTATTGTTA TTGTTATCGT TATTGTTGTT AATATATCGT 80069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTTGAAGA TATGATTATT GTTATTGTTA TTGTTATCGT TATTGTTGTT AATATATCGT 357 ATAAATGTGT TTTAATGTTC TTGTTTGTGT TAGATGAGAA ATTTGTTGCT AGGTTCTAGT 80129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAATGTGT TTTAATGTTC TTGTTTGTGT TAGATGAGAA ATTTGTTGCT AGGTTCTAGT 417 GAGTGAGAAA TGAACTAGGG GCTTGTTCAA TTTCATGAAT TATTGCTAGG ATTAGGTTTG 80189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGAGAAA TGAACTAGGG GCTTGTTCAA TTTCATGAAT TATTGCTAGG ATTAGGTTTG 477 TTTGCTATAT CTCATTTGTC AAGAGTTTAC GTTCACCGAG TTTTGGTGTT GTAAGCTGTG 80249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCTATAT CTCATTTGTC AAGAGTTTAC GTTCACCGAG TTTTGGTGTT GTAAGCTGTG 537 GGACGATAAC ACGAAACACA AGCATCAGGG GAAGTTGTTG CTTGTGATGA TGAATTTGGT 80309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACGATAAC ACGAAACACA AGCATCAGGG GAAGTTGTTG CTTGTGATGA TGAATTTGGT 597 GGGGTTTGTT CTGTTGTTTG CAGACCTCAC AATAAGCTGC TTTGATCACA TTGTAACAAG 80369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTTTGTT CTGTTGTTTG CAGACCTCAC AATAAGCTGC TTTGATCACA TTGTAACAAG 657 ATATAATAGG GGATCAGTGT GGACTATGAA AACCTGTAGT TCCACATGAA TGTTTTGTAA 80429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATAATAGG GGATCAGTGT GGACTATGAA AACCTGTAGT TCCACATGAA TGTTTTGTAA 717 GGAAACCATG GCGGTTTCCG TTGAATTCAA TTCTGTAATT TGTTGAAACT ATATCAGTTG 80489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAACCATG GCGGTTTCCG TTGAATTCAA TTCTGTAATT TGTTGAAACT ATATCAGTTG 777 TGAGCTTAAA CTTTCCTACT CAAAAGATTG CTATGGACTT CAATTTATTA CT 80541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TGAGCTTAAA CTTTCCTACT CAAAAGATTG CTATGGACTT CAATTTATTA CT 829 hqPGS_C04HBa0127E11.1+_SGN-U322624+ (79710 80541) ******************************************************************************** EST sequence 4 +strand 661 n (File: SGN-U313322+) 1 GGTTACCAGT TCAAGTCCCG TTTCCGGCAA CTTTTCCGGT TATTAAGCTG TTCCGCCGCT 61 GAGCACACTG ATTTAACTTC AGATTTACCC AATACAGAGG TGATTGAAAG CTATGGCTTC 121 CAAGGTATCC ATCATTTCAA AATGGACGGT TAAAGCTGAG GGAAAAAGTC AGCACCATAC 181 AGATAATTGT AAGATTATTG AGTTGACACC ATGGGACATT CTTGAGCTTC AAATTGACTA 241 CTTTCAAACT GGACTCCTCT TCCTCATGCC TGCATTTGAA CAAGTAAGAG ATCTACTAAA 301 AACAACCAAC ACCAGTTCCT TAATTGATCA TCTTAGAGTT TCACTATCTC GAGCTTTAGA 361 GCCTGTTTGG CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT 421 TTAAATGTTT GGCAATACTC AAAATAGCTT ATTTTAAGTT AAAAAAACTT ATTTTAAGCC 481 AAAAGTGTGC TTTTTTTTTT TAGCTTATAA GCTGTTTTAA GTTGACCATA TTTTTATGTT 541 TTTTCCCTTA ATATTTTTAT ACAATCTCCA AATTACCCAT ATAACACTAA CTTCTCTTTC 601 TTCTATTTTT CCCTTTTCAC GTTTGGCATA ACAACTTCAA CACTTTTATC CAAACGCATA 661 A Predicted gene structure (within gDNA segment 78894 to 84752): Exon 1 80857 80877 ( 21 n); cDNA 322 342 ( 21 n); score: 0.762 Intron 1 80878 83046 (2169 n); Pd: 0.000 (s: 0), Pa: 0.268 (s: 0.80) Exon 2 83047 83351 ( 305 n); cDNA 343 626 ( 284 n); score: 0.839 Intron 2 83352 83809 ( 458 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0) Exon 3 83810 83844 ( 35 n); cDNA 627 661 ( 35 n); score: 0.829 MATCH C04HBa0127E11.1+ SGN-U313322+ 0.839 361 0.546 C PGS_C04HBa0127E11.1+_SGN-U313322+ (80857 80877,83047 83351,83810 83844) Alignment (genomic DNA sequence = upper lines): AATGGAACAG CTCAAAGTTT CAACAGAAAG AGTATTTGAT GATTATTTAC GTTAATGATC 80916 ||| || || || | ||||| | AATTGATCAT CTTAGAGTTT C......... .......... .......... .......... 342 TTCATGCTAT ATAAGTTCCT CAGTACCACT CAGAAGATTA AACTGTAGTT GTTAAAAATG 80976 .......... .......... .......... .......... .......... .......... 342 TTATAGTATA TCATACATTT ATGGATGACA TGATGCCGTA TTCTATCATG TGCTGCTTCA 81036 .......... .......... .......... .......... .......... .......... 342 ACATGGAGGA GGAAGGAGTT ACACTGCAGC ATCTGGGAGG ATTCTGCTCT GCAGCATCTG 81096 .......... .......... .......... .......... .......... .......... 342 AGATTAACGA CACCTATCAG CTTTAATTTT GCATCAGATT AGGTAAGATG TGGTTATATT 81156 .......... .......... .......... .......... .......... .......... 342 CGCTTTACTT GTGATTCTTT TTGAATCTTA TTAGTTTAGA AGATAAAGCA TATAGATACC 81216 .......... .......... .......... .......... .......... .......... 342 CTGTCAGTTA TCTGGCCTTA GAAAGCGAGA AAACCAATTT TGAGACATCT GATTAGTCTT 81276 .......... .......... .......... .......... .......... .......... 342 ATTTCAAGCT GACAACGAGC TAGCCACACC TTTCTAGCTA TCCCGTTGGG AAAACAAGAA 81336 .......... .......... .......... .......... .......... .......... 342 GGTTTATATA TGTCTTGAAG ATTTGCCCCA ATAGTTCTAA TTTAAATTGG TTCTCTAATA 81396 .......... .......... .......... .......... .......... .......... 342 TAGAGCAAGT GTTTCTTGCT TTGTTTACCT GCATTTCTTT CTTGAGTTGC TGAAGTTTTA 81456 .......... .......... .......... .......... .......... .......... 342 TTAGATTTAA ACTAAAGTCT CCTATGTTTT ATTTACGAGC CGGAGCAATT ATGTTCTCCA 81516 .......... .......... .......... .......... .......... .......... 342 TGATCGATTT CAACTCCACG AGCTGGTTGA TTTTCTTTCT GCATTAATTT CATCTCAAGT 81576 .......... .......... .......... .......... .......... .......... 342 AACCATCCAG AGTAGCAAAT GGTGCAAGAA TACAAACTTT GTTGGATCTG AAGTCTGAAA 81636 .......... .......... .......... .......... .......... .......... 342 GCTTCGGTTG ATTTTCTATT TGCTTCCCAC TTTACGAGAC TATTGATGTA CACTGGAAGG 81696 .......... .......... .......... .......... .......... .......... 342 TAATGTTATT GTTTTCAGCA TGCCTATTTA TCATATTAGT CGTCTTCTCT CGTGTCAAAT 81756 .......... .......... .......... .......... .......... .......... 342 CTTGCTGTAT CTGTTTCTGT TCACATTCAT CTGTTTCAAT CAGAGGAATC TGAATAGAGA 81816 .......... .......... .......... .......... .......... .......... 342 ATAAACATGC CATTTCCGCA TTATTAGATA GATAGTTTGT CTGATATTGG GTAGCATCCA 81876 .......... .......... .......... .......... .......... .......... 342 CTCAATGAAC CTGCTTGTTT AATGATCTCA TTGGATTTTG GGATAAGTCG AGTTTAAGAT 81936 .......... .......... .......... .......... .......... .......... 342 GCGAACCATG GGTACCAAGT ACTTGGAAGC TTTCTATGTA CTCCATGCGT TACTCTTGCC 81996 .......... .......... .......... .......... .......... .......... 342 TCTATTGCTC AAATTCTTCA AAAATGTTGG TGGGTGCGTG TTAGACTCTT GCTAATATGG 82056 .......... .......... .......... .......... .......... .......... 342 TGTTTCATAA CGACTATCAC ATTTGGAATT TCAGTTTAGT TCAAATTCAG CGTTCTCTTT 82116 .......... .......... .......... .......... .......... .......... 342 TCCAGGAGAA TAAGATTGTA TCTACAATCA GTATCGATCA TAGTTGAACC TTGGTCGCCT 82176 .......... .......... .......... .......... .......... .......... 342 TGATTATGTC TATTTGTCTC GTAAATAATT GCATATTTGA AAGAGGGATT TTCAGGGAAC 82236 .......... .......... .......... .......... .......... .......... 342 AACATAAAGC ATGCTCAAGA ACTAACAACT TTTTGAAACT AGTTGTTTTT TGAGAAACAA 82296 .......... .......... .......... .......... .......... .......... 342 TGGAGATTTT ACTTCTCATT TCTCTGTGTG AAGACTGCCT TTTTGTGTCT TACCAACTTT 82356 .......... .......... .......... .......... .......... .......... 342 CTGTATTATT TCAATCACTT GAATGCTTAC TCGTTATTCA TTTCTCCTCA GAACGGAAGT 82416 .......... .......... .......... .......... .......... .......... 342 CTTGGAGCAA TAGTAAACTT ATCTCCGTGT AAGTTCCAAG TCATTGTTTG AGCTGCAGCG 82476 .......... .......... .......... .......... .......... .......... 342 GAACCAACCA CTGAATGCTT GCTTCAGGTG CGGCCCTTCC ACGTACCCTG CATGCAACGG 82536 .......... .......... .......... .......... .......... .......... 342 CTTCCTTTCT AATTCAATTC TGTCTCAGTA CAAATAGTTC ATTGGTTTCT TATAACATAA 82596 .......... .......... .......... .......... .......... .......... 342 TTTTTCCTCA GCCACATAAG AGGAATTATA TATATTCCTT TATTAGGGAT AATTACGATC 82656 .......... .......... .......... .......... .......... .......... 342 CCTAAACACT TCGATAAACT AGTTTATTTA TAAAATACAA ACAATGTATA AGTCGTGTAT 82716 .......... .......... .......... .......... .......... .......... 342 ACTTTACTAA ACATCATATA CTAATACACA ACATATATAC TTAATAGTGT GTATGTTACA 82776 .......... .......... .......... .......... .......... .......... 342 TTTATTTTTT AGTAAACTAG TCGGCTGAAC GGTATATATC TATAACTTTC TTAATTTTTT 82836 .......... .......... .......... .......... .......... .......... 342 TAGAAATAAA CTTCGAACTT TATAGATTCA CAATAGTGTA AACTTTATAG GTTCACTTGA 82896 .......... .......... .......... .......... .......... .......... 342 TTGATTGGTA TCTATATGTT TCTTCTACAT GACTTCAAGT TACGTCTCCT TTGTTATAAT 82956 .......... .......... .......... .......... .......... .......... 342 TGTAATTATA TTTGATTCTA TAACATCAGT TTTGTGTTCT TTTTTCTTTT AAAAAATGCT 83016 .......... .......... .......... .......... .......... .......... 342 TTTAAGTTAG CTAAAAGCTT GGCCAAACAG GCAATAGACA AGTGTTAAGA GCCTGTTTGG 83076 | || | || || ||| |||||||||| .......... .......... .......... ACTAT-CTCG AG-CTTTAGA GCCTGTTTGG 370 CTCAGCTTAA AAACTGGTCA AACTGACTTA AAAACTGGTT TTTGACTTAT TTAGCTGTTT 83136 |||||||||| || ||||||| |||||||||| ||| |||||| |||||||||| ||| ||||| CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAAATGTTT 430 GGCAATACTC AAAATAACTT ATTTTAAGTT TAAAAAAACT TATTTTAGGT CAAAAGTTAA 83196 |||||||||| |||||| ||| |||||||| | |||||||||| || ||| | ||| || GGCAATACTC AAAATAGCTT ATTTTAAG-T TAAAAAAACT TA-TTT---T ---AAGCCAA 482 AAGCTGGGTA GAGATGCTTT TTTTTTTTTT AGCTTATAAG CTGTTTTAAG TTGATCACAT 83256 ||| | | ||| | |||||||||| |||||||||| |||||||||| |||| || || AAG-T----- --G-TGC--T TTTTTTTTTT AGCTTATAAG CTGTTTTAAG TTGACCATAT 531 TTTTACGTTT TTGGCCTTAA TATTTTTATA CAATCTCCAA ATTACCTACA TAACTCTAAT 83316 ||||| |||| || |||||| |||||||||| |||||||||| |||||| | | |||| |||| TTTTATGTTT TTTCCCTTAA TATTTTTATA CAATCTCCAA ATTACCCATA TAACACTAAC 591 ATCTCTTTCT TTCATTTTTC CTTTTTCACG TGTGGATGAT AGATAATTAC TATTACTAAT 83376 ||||||||| | ||||||| | |||||||| | ||| TTCTCTTTCT TCTATTTTTC CCTTTTCACG TTTGG..... .......... .......... 626 GAATAAAAAT AAAAAAAATC TTATCTTTCA AGTGATCTAT TCAAATTATA TATTATTAAA 83436 .......... .......... .......... .......... .......... .......... 626 ATGTAAAATA AGTTGCACAT CTAACTTAAA TAAAAATTTA TATTCTTCTT ATAAATAATT 83496 .......... .......... .......... .......... .......... .......... 626 TGTGATAATA AAGAAATATG TGAATGATAG ACAATTATTA TTACCTATGG ATGAAACTAA 83556 .......... .......... .......... .......... .......... .......... 626 AATAAAATCT TAAATCGTTC TTTGATCTTT TCAAATTATA TATCTTTAAA ATCTATAATA 83616 .......... .......... .......... .......... .......... .......... 626 AGTTTATATT CCTCTTATAA ATAATTTGTG ATGAGAAAGA AATATGTGAA TGATAGCAAA 83676 .......... .......... .......... .......... .......... .......... 626 ATATAATTAT TTATGGCTGT AAAATATAAA TTAATTAACT TTTATTATGT TAACAACTTT 83736 .......... .......... .......... .......... .......... .......... 626 TAAGAGTATT TCAGACATTT TGATTTAAAA AGCAGTTTAT CAGCATTTAT TTGCCAAACA 83796 .......... .......... .......... .......... .......... .......... 626 CATCAACAAT TTTTTTTTTA ACTTCAGCAC TTTTATCCAA ACGCATAA 83844 | | |||||| ||| |||||||||| |||||||| .......... ...CATAACA ACTTCAACAC TTTTATCCAA ACGCATAA 661 hqPGS_C04HBa0127E11.1+_SGN-U313322+ (80857 80877,83047 83351,83810 83844) ******************************************************************************** EST sequence 9 +strand 785 n (File: SGN-U334277+) 1 CTCCACCGCG GTTGCGGCCG CTCTAGAACT AGTGGATCCC CCGGGCTGCA GGCAAAAGTG 61 TAAAACAAGC TCGAAACCTC TCAAAAATCA TCCCCCAAAT TCAACAAAAC ACTCGGAAAT 121 TCTGAGCCGA GCATCCAAAC CCCGAATGTT CACCAAAGTC AACCCAAAAG CCCACAATTT 181 CACAACTTAG GACCTCAAAT CCTCAAAAAG ACTCAGAATA CGAAACGAAC AACTCTCACA 241 ACTCAGATTC CACATTCCGG TACTGATGGT ATTGATGGAA CTTTATTCCG ACACTCGAAG 301 CTCCCAAAGG CTCCAAAAAC CACTTTTGAG CAACTTAGAG CCTGTTTGGC TCAGCTTAAA 361 AGCTGGTCAA ACTGACTTAA AAGCTGGTTT TTGACTTATT TAACTGTTTG GCAATACTCA 421 AAACAGCTTA TTTTAAGTTA AAAAAAACTC GAGGGGGGGC CCGGTACCCA ATTCGCCCTA 481 TAGTGAGTCG TATTACAATT CACTGGCCGT CGTTTTACAA CGTCGTGACT GGGAAAACCC 541 TGGCGTTACC CAACTTAATC GCCTTGCAGC ACATCCCCCT TTCGCCAGCT GGCGTAATAG 601 CGAAGAGGCC CGCACCGATC GCTCTTCCCA ACAGTTGCGC ATCCTGAATG GCGAATGGCA 661 AATTGTAAGC GTTAATATTT TGTAAAATTC GCGTTTCATT TTTGTTAAAC CAGCTCATTT 721 TTAACCAATA GGCCGAAATC GGCAAATCCC TTATAAATAA AAGAAAGAAC GAGATAGGGT 781 TGAGT Predicted gene structure (within gDNA segment 78504 to 87380): Exon 1 79174 79202 ( 29 n); cDNA 248 274 ( 27 n); score: 0.690 Intron 1 79203 80102 ( 900 n); Pd: 0.000 (s: 0), Pa: 0.988 (s: 0) Exon 2 80103 80127 ( 25 n); cDNA 275 298 ( 24 n); score: 0.640 Intron 2 80128 80332 ( 205 n); Pd: 0.000 (s: 0), Pa: 0.977 (s: 0) Exon 3 80333 80347 ( 15 n); cDNA 299 312 ( 14 n); score: 0.733 Intron 3 80348 81241 ( 894 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 4 81242 81267 ( 26 n); cDNA 313 336 ( 24 n); score: 0.769 Intron 4 81268 83063 (1796 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.96) Exon 5 83064 83176 ( 113 n); cDNA 337 449 ( 113 n); score: 0.947 MATCH C04HBa0127E11.1+ SGN-U334277+ 0.947 208 0.265 C PGS_C04HBa0127E11.1+_SGN-U334277+ (79174 79202,80103 80127,80333 80347,81242 81267,83064 83176) Alignment (genomic DNA sequence = upper lines): TTCCACCACT ACCGTTTTTG CTGCTAGTGT TTTGAGCTTC TAATGTCGAC GTCTGCAGAG 79233 ||||| || | ||| | || || || || TTCCA-CA-T TCCGGTACTG ATGGTATTG. .......... .......... .......... 274 GGAAATGGAG CTATAATTGA TCCTCAGAGG CAACAACAAC AGGCGCCTAC TGGGGTTGGT 79293 .......... .......... .......... .......... .......... .......... 274 ACAAATGGTG CTTTAACAGT GAAAAAACCG CCGGTAAAAG ACCGGCATAG TAAGGTTGAT 79353 .......... .......... .......... .......... .......... .......... 274 GGTAGAGGAA GACGTATAAG GATGCCAATT GTATGTGCGG CAAGAGTTTT TCAGCTTACT 79413 .......... .......... .......... .......... .......... .......... 274 CGTGAATTGG GTCATAAATC CGATGGACAA ACTATTGAAT GGCTGCTTCG TCAAGCTGAG 79473 .......... .......... .......... .......... .......... .......... 274 CCTTCAATTA TAGCTGCTAC TGGTACTGGT ACTATTCCTG CTAGTTTCTC GACTGTATCT 79533 .......... .......... .......... .......... .......... .......... 274 GTATCGGTAC GGAACTCAAC TGCATCTCTT GTTTCATCAC TCTCCGCTCC ACTTGATCAG 79593 .......... .......... .......... .......... .......... .......... 274 AAATCATCAC AAATGATTTC ACCGGCGCCG TTTATCCTCG GGAAACGTCT CCGGTCAGAT 79653 .......... .......... .......... .......... .......... .......... 274 GACGAAAACA TTGAAAATGG GAATAAGGAT GATGTAGCTG TGGCTGCCGG AGCTGCTACT 79713 .......... .......... .......... .......... .......... .......... 274 GCTGTGGGTC CCACAGCTGG GTTTTGGGCT GTTCCAGCTA GGCCTGATTT TGGTCAAATT 79773 .......... .......... .......... .......... .......... .......... 274 TGGAGCTTTG CGGCGGCACC GCCACCTGAA ATGATGGTGC CAACCTCCGC GGCTGCAGCA 79833 .......... .......... .......... .......... .......... .......... 274 GCTGCAGCCG CGGCAGCGTT AAGTTCGCAG AGTTCTAGAT TCTTTCAGCA GCAGATGGGT 79893 .......... .......... .......... .......... .......... .......... 274 GAGGCTTCAG CTGCTAGAGT TGGGAATTAC TTACCAATGA CTCAAGGGCA TCTCAATTTG 79953 .......... .......... .......... .......... .......... .......... 274 CTAGCTTCTC TATCAGGTCC TCCACAGCCC TCTTCCGGGA GAAGAGACGA CGACGGACGT 80013 .......... .......... .......... .......... .......... .......... 274 TGAAGATATG ATTATTGTTA TTGTTATTGT TATCGTTATT GTTGTTAATA TATCGTATAA 80073 .......... .......... .......... .......... .......... .......... 274 ATGTGTTTTA ATGTTCTTGT TTGTGTTAGA TGAGAAATTT GTTGCTAGGT TCTAGTGAGT 80133 | || ||| ||| || | | || | .......... .......... .........A TG-GAACTTT ATTCCGACAC TCGA...... 298 GAGAAATGAA CTAGGGGCTT GTTCAATTTC ATGAATTATT GCTAGGATTA GGTTTGTTTG 80193 .......... .......... .......... .......... .......... .......... 298 CTATATCTCA TTTGTCAAGA GTTTACGTTC ACCGAGTTTT GGTGTTGTAA GCTGTGGGAC 80253 .......... .......... .......... .......... .......... .......... 298 GATAACACGA AACACAAGCA TCAGGGGAAG TTGTTGCTTG TGATGATGAA TTTGGTGGGG 80313 .......... .......... .......... .......... .......... .......... 298 TTTGTTCTGT TGTTTGCAGA CCTCACAATA AGCTGCTTTG ATCACATTGT AACAAGATAT 80373 | ||| ||| | ||| .......... .........A GCTCCCAA-A GGCT...... .......... .......... 312 AATAGGGGAT CAGTGTGGAC TATGAAAACC TGTAGTTCCA CATGAATGTT TTGTAAGGAA 80433 .......... .......... .......... .......... .......... .......... 312 ACCATGGCGG TTTCCGTTGA ATTCAATTCT GTAATTTGTT GAAACTATAT CAGTTGTGAG 80493 .......... .......... .......... .......... .......... .......... 312 CTTAAACTTT CCTACTCAAA AGATTGCTAT GGACTTCAAT TTATTACTCA ACTTACATTG 80553 .......... .......... .......... .......... .......... .......... 312 TGTTATCTTG AATGGGTGCT ATAATTAGAT GTTTTCGACA TCTCAATGAT TGAGTTGACA 80613 .......... .......... .......... .......... .......... .......... 312 CCATACTGTA TAAAATGAAA TGGTTCATTT ATTGCATTAC TGGTTACACG TGTCGACTGA 80673 .......... .......... .......... .......... .......... .......... 312 TCAACTAATG CATGGGACAG TGTGAAGTTG AAACATGAAA TGCTGTGGAG GCGAACGTAT 80733 .......... .......... .......... .......... .......... .......... 312 AAGGAGGATA GAACTCTAAA TTTCTATACT CAAGCTTTCT TAGATTGGTT ATGGACCAGA 80793 .......... .......... .......... .......... .......... .......... 312 TAATCTTGCT ACAGCTTGAT GTTTATTCTA TGTATAAATG TGCGATGTGT GCCATAGATT 80853 .......... .......... .......... .......... .......... .......... 312 CGAAATGGAA CAGCTCAAAG TTTCAACAGA AAGAGTATTT GATGATTATT TACGTTAATG 80913 .......... .......... .......... .......... .......... .......... 312 ATCTTCATGC TATATAAGTT CCTCAGTACC ACTCAGAAGA TTAAACTGTA GTTGTTAAAA 80973 .......... .......... .......... .......... .......... .......... 312 ATGTTATAGT ATATCATACA TTTATGGATG ACATGATGCC GTATTCTATC ATGTGCTGCT 81033 .......... .......... .......... .......... .......... .......... 312 TCAACATGGA GGAGGAAGGA GTTACACTGC AGCATCTGGG AGGATTCTGC TCTGCAGCAT 81093 .......... .......... .......... .......... .......... .......... 312 CTGAGATTAA CGACACCTAT CAGCTTTAAT TTTGCATCAG ATTAGGTAAG ATGTGGTTAT 81153 .......... .......... .......... .......... .......... .......... 312 ATTCGCTTTA CTTGTGATTC TTTTTGAATC TTATTAGTTT AGAAGATAAA GCATATAGAT 81213 .......... .......... .......... .......... .......... .......... 312 ACCCTGTCAG TTATCTGGCC TTAGAAAGCG AGAAAACCAA TTTTGAGACA TCTGATTAGT 81273 | | ||||||| ||||||| || || .......... .......... ........CC A-AAAACCAC TTTTGAG-CA ACTT...... 336 CTTATTTCAA GCTGACAACG AGCTAGCCAC ACCTTTCTAG CTATCCCGTT GGGAAAACAA 81333 .......... .......... .......... .......... .......... .......... 336 GAAGGTTTAT ATATGTCTTG AAGATTTGCC CCAATAGTTC TAATTTAAAT TGGTTCTCTA 81393 .......... .......... .......... .......... .......... .......... 336 ATATAGAGCA AGTGTTTCTT GCTTTGTTTA CCTGCATTTC TTTCTTGAGT TGCTGAAGTT 81453 .......... .......... .......... .......... .......... .......... 336 TTATTAGATT TAAACTAAAG TCTCCTATGT TTTATTTACG AGCCGGAGCA ATTATGTTCT 81513 .......... .......... .......... .......... .......... .......... 336 CCATGATCGA TTTCAACTCC ACGAGCTGGT TGATTTTCTT TCTGCATTAA TTTCATCTCA 81573 .......... .......... .......... .......... .......... .......... 336 AGTAACCATC CAGAGTAGCA AATGGTGCAA GAATACAAAC TTTGTTGGAT CTGAAGTCTG 81633 .......... .......... .......... .......... .......... .......... 336 AAAGCTTCGG TTGATTTTCT ATTTGCTTCC CACTTTACGA GACTATTGAT GTACACTGGA 81693 .......... .......... .......... .......... .......... .......... 336 AGGTAATGTT ATTGTTTTCA GCATGCCTAT TTATCATATT AGTCGTCTTC TCTCGTGTCA 81753 .......... .......... .......... .......... .......... .......... 336 AATCTTGCTG TATCTGTTTC TGTTCACATT CATCTGTTTC AATCAGAGGA ATCTGAATAG 81813 .......... .......... .......... .......... .......... .......... 336 AGAATAAACA TGCCATTTCC GCATTATTAG ATAGATAGTT TGTCTGATAT TGGGTAGCAT 81873 .......... .......... .......... .......... .......... .......... 336 CCACTCAATG AACCTGCTTG TTTAATGATC TCATTGGATT TTGGGATAAG TCGAGTTTAA 81933 .......... .......... .......... .......... .......... .......... 336 GATGCGAACC ATGGGTACCA AGTACTTGGA AGCTTTCTAT GTACTCCATG CGTTACTCTT 81993 .......... .......... .......... .......... .......... .......... 336 GCCTCTATTG CTCAAATTCT TCAAAAATGT TGGTGGGTGC GTGTTAGACT CTTGCTAATA 82053 .......... .......... .......... .......... .......... .......... 336 TGGTGTTTCA TAACGACTAT CACATTTGGA ATTTCAGTTT AGTTCAAATT CAGCGTTCTC 82113 .......... .......... .......... .......... .......... .......... 336 TTTTCCAGGA GAATAAGATT GTATCTACAA TCAGTATCGA TCATAGTTGA ACCTTGGTCG 82173 .......... .......... .......... .......... .......... .......... 336 CCTTGATTAT GTCTATTTGT CTCGTAAATA ATTGCATATT TGAAAGAGGG ATTTTCAGGG 82233 .......... .......... .......... .......... .......... .......... 336 AACAACATAA AGCATGCTCA AGAACTAACA ACTTTTTGAA ACTAGTTGTT TTTTGAGAAA 82293 .......... .......... .......... .......... .......... .......... 336 CAATGGAGAT TTTACTTCTC ATTTCTCTGT GTGAAGACTG CCTTTTTGTG TCTTACCAAC 82353 .......... .......... .......... .......... .......... .......... 336 TTTCTGTATT ATTTCAATCA CTTGAATGCT TACTCGTTAT TCATTTCTCC TCAGAACGGA 82413 .......... .......... .......... .......... .......... .......... 336 AGTCTTGGAG CAATAGTAAA CTTATCTCCG TGTAAGTTCC AAGTCATTGT TTGAGCTGCA 82473 .......... .......... .......... .......... .......... .......... 336 GCGGAACCAA CCACTGAATG CTTGCTTCAG GTGCGGCCCT TCCACGTACC CTGCATGCAA 82533 .......... .......... .......... .......... .......... .......... 336 CGGCTTCCTT TCTAATTCAA TTCTGTCTCA GTACAAATAG TTCATTGGTT TCTTATAACA 82593 .......... .......... .......... .......... .......... .......... 336 TAATTTTTCC TCAGCCACAT AAGAGGAATT ATATATATTC CTTTATTAGG GATAATTACG 82653 .......... .......... .......... .......... .......... .......... 336 ATCCCTAAAC ACTTCGATAA ACTAGTTTAT TTATAAAATA CAAACAATGT ATAAGTCGTG 82713 .......... .......... .......... .......... .......... .......... 336 TATACTTTAC TAAACATCAT ATACTAATAC ACAACATATA TACTTAATAG TGTGTATGTT 82773 .......... .......... .......... .......... .......... .......... 336 ACATTTATTT TTTAGTAAAC TAGTCGGCTG AACGGTATAT ATCTATAACT TTCTTAATTT 82833 .......... .......... .......... .......... .......... .......... 336 TTTTAGAAAT AAACTTCGAA CTTTATAGAT TCACAATAGT GTAAACTTTA TAGGTTCACT 82893 .......... .......... .......... .......... .......... .......... 336 TGATTGATTG GTATCTATAT GTTTCTTCTA CATGACTTCA AGTTACGTCT CCTTTGTTAT 82953 .......... .......... .......... .......... .......... .......... 336 AATTGTAATT ATATTTGATT CTATAACATC AGTTTTGTGT TCTTTTTTCT TTTAAAAAAT 83013 .......... .......... .......... .......... .......... .......... 336 GCTTTTAAGT TAGCTAAAAG CTTGGCCAAA CAGGCAATAG ACAAGTGTTA AGAGCCTGTT 83073 |||||||||| .......... .......... .......... .......... .......... AGAGCCTGTT 346 TGGCTCAGCT TAAAAACTGG TCAAACTGAC TTAAAAACTG GTTTTTGACT TATTTAGCTG 83133 |||||||||| ||||| |||| |||||||||| |||||| ||| |||||||||| |||||| ||| TGGCTCAGCT TAAAAGCTGG TCAAACTGAC TTAAAAGCTG GTTTTTGACT TATTTAACTG 406 TTTGGCAATA CTCAAAATAA CTTATTTTAA GTTTAAAAAA ACT 83176 |||||||||| ||||||| | |||||||||| ||| |||||| ||| TTTGGCAATA CTCAAAACAG CTTATTTTAA GTTAAAAAAA ACT 449 hqPGS_C04HBa0127E11.1+_SGN-U334277+ (81242 81267,83064 83176) ******************************************************************************** EST sequence 24 -strand 1289 n (File: SGN-U313328-) 1 TTTCCAAATG AAACAAAAGA CAATTAGGTG TTAGTTGATA AATATTAAGC GTTAAATTCG 61 ATTTTTTATA TATAAGTTTT CTAGTGCTTA AATATAATTG GGAAGGTCAA GGGGTTTGTG 121 ACTTAAGTTA GTGATGTCTG GTATTTAAGT GGAGATACGT AAAAAGACAA AATTATTATC 181 TCTGTGTTAC ATAGTTGCAA GTTGCAACTA TTTCTAACAA TCGACTCTAG ATGATTTTTT 241 TCGATTAAAA TAATAAAAAA AGAAATTTAT ATGAATAGTT ATTTTTTTAA CCAAAGTGCA 301 TAAATTGGAA ACTCATAAAT TTGTGACTTA GGTTACATGG TTGAGAACTG CCTCAAACTT 361 ATAATGTCTA CTATTTAAGT GGAGATACGT AAAAGAAAAA ATTATTGTCT AAGAGCTTGT 421 TTAGTTCAGC TTAAAAGCTG ATCAAACTGA CTTAAAAACT GATTTTTGAC TTATTTAGTT 481 GTTTGGCAAT ACTCAAAATA ACTTATTTTA AGTTAAAAAA AAAAACTTAT TTTAAGCCAA 541 AAGTTAAAAG CTGGGGTAGG GGTGCTTTTT TTTTAGCTTA TAAGCTGTTT TAAGTTGACC 601 ACATTTTTAT CTTTTTGCCC TTAATATTTT TATACAATCT CCAAATTATC CACATAACTC 661 TAACATCTCT TTCTTCCATT TTTCCATTTT CACGTTTGGC ATAGCAACTT CAACACTTTT 721 ATCCAAATGC ATAACTTTTA AAAGTACTTT TTTAAAGCTA AGTCCATCCA AACGGGCCCT 781 AAGAATGAAC TCTACATGAA TTTTTCGATC AAAATAAACA TAATTTTGTA TAATTAATTA 841 TTTTTAAAAA ATTTATGATT AAACGAGAGT TTAGAGAGTT GATTACCAAG TAGAGCAACA 901 GTTCCTTCAG TATCAACACC AATTGATTGA AATCTTGAAA GCACAGATGA GATTGAATCG 961 TTGTGATTAG GGAGGTACTT CTCAACTTCT GAAAAGTAAG TTTCCTTGCT ATCTTTCCTT 1021 CCTGTTTTCA TTTCAATTTT TATTGGCCCT CCTAACCAAA GAAGACCATC ATGAAAAAGA 1081 TTTCTAATCC AAGAAACTGC TGTGTTCCCA TGTTTGTGGT ACAATGTTGC CACTTGTTCT 1141 TTGATGATAT CTTCAGCTCT TGGGCAACTC TTTGTGTAGT AATTTAATTG GAGCTCACTT 1201 TTTACATTAT GAATGTGAAG AAGTAGAGGT AATAACAATA AGAGAAATCT TGAACAATTG 1261 GCCATGTCTT TGATGTGTAA TGAAGTGTT Predicted gene structure (within gDNA segment 78074 to 90310): Exon 1 79201 79223 ( 23 n); cDNA 349 371 ( 23 n); score: 0.696 Intron 1 79224 80693 (1470 n); Pd: 0.000 (s: 0), Pa: 0.903 (s: 0) Exon 2 80694 80714 ( 21 n); cDNA 372 393 ( 22 n); score: 0.500 Intron 2 80715 83046 (2332 n); Pd: 0.000 (s: 0), Pa: 0.268 (s: 0.70) Exon 3 83047 83358 ( 312 n); cDNA 394 704 ( 311 n); score: 0.845 Intron 3 83359 83814 ( 456 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.79) Exon 4 83815 83856 ( 42 n); cDNA 705 746 ( 42 n); score: 0.786 Intron 4 83857 83895 ( 39 n); Pd: 0.000 (s: 0.79), Pa: 0.000 (s: 0.65) Exon 5 83896 83965 ( 70 n); cDNA 747 817 ( 71 n); score: 0.614 Intron 5 83966 84132 ( 167 n); Pd: 0.874 (s: 0.64), Pa: 0.000 (s: 0.70) Exon 6 84133 84177 ( 45 n); cDNA 818 860 ( 43 n); score: 0.700 Intron 6 84178 85488 (1311 n); Pd: 0.000 (s: 0.70), Pa: 0.972 (s: 0) Exon 7 85489 85521 ( 33 n); cDNA 861 890 ( 30 n); score: 0.576 Intron 7 85522 87219 (1698 n); Pd: 0.369 (s: 0), Pa: 0.860 (s: 0) Exon 8 87220 87237 ( 18 n); cDNA 891 907 ( 17 n); score: 0.667 MATCH C04HBa0127E11.1+ SGN-U313328- 0.802 564 0.438 C PGS_C04HBa0127E11.1+_SGN-U313328- (79201 79223,80694 80714,83047 83358,83815 83856,83896 83965,84133 84177,85489 85521,87220 87237) Alignment (genomic DNA sequence = upper lines): TGTTTTGAGC TTCTAATGTC GACGTCTGCA GAGGGAAATG GAGCTATAAT TGATCCTCAG 79260 || | | | || ||||||| || TGCCTCAAAC TTATAATGTC TAC....... .......... .......... .......... 371 AGGCAACAAC AACAGGCGCC TACTGGGGTT GGTACAAATG GTGCTTTAAC AGTGAAAAAA 79320 .......... .......... .......... .......... .......... .......... 371 CCGCCGGTAA AAGACCGGCA TAGTAAGGTT GATGGTAGAG GAAGACGTAT AAGGATGCCA 79380 .......... .......... .......... .......... .......... .......... 371 ATTGTATGTG CGGCAAGAGT TTTTCAGCTT ACTCGTGAAT TGGGTCATAA ATCCGATGGA 79440 .......... .......... .......... .......... .......... .......... 371 CAAACTATTG AATGGCTGCT TCGTCAAGCT GAGCCTTCAA TTATAGCTGC TACTGGTACT 79500 .......... .......... .......... .......... .......... .......... 371 GGTACTATTC CTGCTAGTTT CTCGACTGTA TCTGTATCGG TACGGAACTC AACTGCATCT 79560 .......... .......... .......... .......... .......... .......... 371 CTTGTTTCAT CACTCTCCGC TCCACTTGAT CAGAAATCAT CACAAATGAT TTCACCGGCG 79620 .......... .......... .......... .......... .......... .......... 371 CCGTTTATCC TCGGGAAACG TCTCCGGTCA GATGACGAAA ACATTGAAAA TGGGAATAAG 79680 .......... .......... .......... .......... .......... .......... 371 GATGATGTAG CTGTGGCTGC CGGAGCTGCT ACTGCTGTGG GTCCCACAGC TGGGTTTTGG 79740 .......... .......... .......... .......... .......... .......... 371 GCTGTTCCAG CTAGGCCTGA TTTTGGTCAA ATTTGGAGCT TTGCGGCGGC ACCGCCACCT 79800 .......... .......... .......... .......... .......... .......... 371 GAAATGATGG TGCCAACCTC CGCGGCTGCA GCAGCTGCAG CCGCGGCAGC GTTAAGTTCG 79860 .......... .......... .......... .......... .......... .......... 371 CAGAGTTCTA GATTCTTTCA GCAGCAGATG GGTGAGGCTT CAGCTGCTAG AGTTGGGAAT 79920 .......... .......... .......... .......... .......... .......... 371 TACTTACCAA TGACTCAAGG GCATCTCAAT TTGCTAGCTT CTCTATCAGG TCCTCCACAG 79980 .......... .......... .......... .......... .......... .......... 371 CCCTCTTCCG GGAGAAGAGA CGACGACGGA CGTTGAAGAT ATGATTATTG TTATTGTTAT 80040 .......... .......... .......... .......... .......... .......... 371 TGTTATCGTT ATTGTTGTTA ATATATCGTA TAAATGTGTT TTAATGTTCT TGTTTGTGTT 80100 .......... .......... .......... .......... .......... .......... 371 AGATGAGAAA TTTGTTGCTA GGTTCTAGTG AGTGAGAAAT GAACTAGGGG CTTGTTCAAT 80160 .......... .......... .......... .......... .......... .......... 371 TTCATGAATT ATTGCTAGGA TTAGGTTTGT TTGCTATATC TCATTTGTCA AGAGTTTACG 80220 .......... .......... .......... .......... .......... .......... 371 TTCACCGAGT TTTGGTGTTG TAAGCTGTGG GACGATAACA CGAAACACAA GCATCAGGGG 80280 .......... .......... .......... .......... .......... .......... 371 AAGTTGTTGC TTGTGATGAT GAATTTGGTG GGGTTTGTTC TGTTGTTTGC AGACCTCACA 80340 .......... .......... .......... .......... .......... .......... 371 ATAAGCTGCT TTGATCACAT TGTAACAAGA TATAATAGGG GATCAGTGTG GACTATGAAA 80400 .......... .......... .......... .......... .......... .......... 371 ACCTGTAGTT CCACATGAAT GTTTTGTAAG GAAACCATGG CGGTTTCCGT TGAATTCAAT 80460 .......... .......... .......... .......... .......... .......... 371 TCTGTAATTT GTTGAAACTA TATCAGTTGT GAGCTTAAAC TTTCCTACTC AAAAGATTGC 80520 .......... .......... .......... .......... .......... .......... 371 TATGGACTTC AATTTATTAC TCAACTTACA TTGTGTTATC TTGAATGGGT GCTATAATTA 80580 .......... .......... .......... .......... .......... .......... 371 GATGTTTTCG ACATCTCAAT GATTGAGTTG ACACCATACT GTATAAAATG AAATGGTTCA 80640 .......... .......... .......... .......... .......... .......... 371 TTTATTGCAT TACTGGTTAC ACGTGTCGAC TGATCAACTA ATGCATGGGA CAGTG-TGAA 80699 | | || .......... .......... .......... .......... .......... ...TATTTAA 378 GTTGAAACAT GAAATGCTGT GGAGGCGAAC GTATAAGGAG GATAGAACTC TAAATTTCTA 80759 || || | | | || GTGGAGATAC GTAAA..... .......... .......... .......... .......... 393 TACTCAAGCT TTCTTAGATT GGTTATGGAC CAGATAATCT TGCTACAGCT TGATGTTTAT 80819 .......... .......... .......... .......... .......... .......... 393 TCTATGTATA AATGTGCGAT GTGTGCCATA GATTCGAAAT GGAACAGCTC AAAGTTTCAA 80879 .......... .......... .......... .......... .......... .......... 393 CAGAAAGAGT ATTTGATGAT TATTTACGTT AATGATCTTC ATGCTATATA AGTTCCTCAG 80939 .......... .......... .......... .......... .......... .......... 393 TACCACTCAG AAGATTAAAC TGTAGTTGTT AAAAATGTTA TAGTATATCA TACATTTATG 80999 .......... .......... .......... .......... .......... .......... 393 GATGACATGA TGCCGTATTC TATCATGTGC TGCTTCAACA TGGAGGAGGA AGGAGTTACA 81059 .......... .......... .......... .......... .......... .......... 393 CTGCAGCATC TGGGAGGATT CTGCTCTGCA GCATCTGAGA TTAACGACAC CTATCAGCTT 81119 .......... .......... .......... .......... .......... .......... 393 TAATTTTGCA TCAGATTAGG TAAGATGTGG TTATATTCGC TTTACTTGTG ATTCTTTTTG 81179 .......... .......... .......... .......... .......... .......... 393 AATCTTATTA GTTTAGAAGA TAAAGCATAT AGATACCCTG TCAGTTATCT GGCCTTAGAA 81239 .......... .......... .......... .......... .......... .......... 393 AGCGAGAAAA CCAATTTTGA GACATCTGAT TAGTCTTATT TCAAGCTGAC AACGAGCTAG 81299 .......... .......... .......... .......... .......... .......... 393 CCACACCTTT CTAGCTATCC CGTTGGGAAA ACAAGAAGGT TTATATATGT CTTGAAGATT 81359 .......... .......... .......... .......... .......... .......... 393 TGCCCCAATA GTTCTAATTT AAATTGGTTC TCTAATATAG AGCAAGTGTT TCTTGCTTTG 81419 .......... .......... .......... .......... .......... .......... 393 TTTACCTGCA TTTCTTTCTT GAGTTGCTGA AGTTTTATTA GATTTAAACT AAAGTCTCCT 81479 .......... .......... .......... .......... .......... .......... 393 ATGTTTTATT TACGAGCCGG AGCAATTATG TTCTCCATGA TCGATTTCAA CTCCACGAGC 81539 .......... .......... .......... .......... .......... .......... 393 TGGTTGATTT TCTTTCTGCA TTAATTTCAT CTCAAGTAAC CATCCAGAGT AGCAAATGGT 81599 .......... .......... .......... .......... .......... .......... 393 GCAAGAATAC AAACTTTGTT GGATCTGAAG TCTGAAAGCT TCGGTTGATT TTCTATTTGC 81659 .......... .......... .......... .......... .......... .......... 393 TTCCCACTTT ACGAGACTAT TGATGTACAC TGGAAGGTAA TGTTATTGTT TTCAGCATGC 81719 .......... .......... .......... .......... .......... .......... 393 CTATTTATCA TATTAGTCGT CTTCTCTCGT GTCAAATCTT GCTGTATCTG TTTCTGTTCA 81779 .......... .......... .......... .......... .......... .......... 393 CATTCATCTG TTTCAATCAG AGGAATCTGA ATAGAGAATA AACATGCCAT TTCCGCATTA 81839 .......... .......... .......... .......... .......... .......... 393 TTAGATAGAT AGTTTGTCTG ATATTGGGTA GCATCCACTC AATGAACCTG CTTGTTTAAT 81899 .......... .......... .......... .......... .......... .......... 393 GATCTCATTG GATTTTGGGA TAAGTCGAGT TTAAGATGCG AACCATGGGT ACCAAGTACT 81959 .......... .......... .......... .......... .......... .......... 393 TGGAAGCTTT CTATGTACTC CATGCGTTAC TCTTGCCTCT ATTGCTCAAA TTCTTCAAAA 82019 .......... .......... .......... .......... .......... .......... 393 ATGTTGGTGG GTGCGTGTTA GACTCTTGCT AATATGGTGT TTCATAACGA CTATCACATT 82079 .......... .......... .......... .......... .......... .......... 393 TGGAATTTCA GTTTAGTTCA AATTCAGCGT TCTCTTTTCC AGGAGAATAA GATTGTATCT 82139 .......... .......... .......... .......... .......... .......... 393 ACAATCAGTA TCGATCATAG TTGAACCTTG GTCGCCTTGA TTATGTCTAT TTGTCTCGTA 82199 .......... .......... .......... .......... .......... .......... 393 AATAATTGCA TATTTGAAAG AGGGATTTTC AGGGAACAAC ATAAAGCATG CTCAAGAACT 82259 .......... .......... .......... .......... .......... .......... 393 AACAACTTTT TGAAACTAGT TGTTTTTTGA GAAACAATGG AGATTTTACT TCTCATTTCT 82319 .......... .......... .......... .......... .......... .......... 393 CTGTGTGAAG ACTGCCTTTT TGTGTCTTAC CAACTTTCTG TATTATTTCA ATCACTTGAA 82379 .......... .......... .......... .......... .......... .......... 393 TGCTTACTCG TTATTCATTT CTCCTCAGAA CGGAAGTCTT GGAGCAATAG TAAACTTATC 82439 .......... .......... .......... .......... .......... .......... 393 TCCGTGTAAG TTCCAAGTCA TTGTTTGAGC TGCAGCGGAA CCAACCACTG AATGCTTGCT 82499 .......... .......... .......... .......... .......... .......... 393 TCAGGTGCGG CCCTTCCACG TACCCTGCAT GCAACGGCTT CCTTTCTAAT TCAATTCTGT 82559 .......... .......... .......... .......... .......... .......... 393 CTCAGTACAA ATAGTTCATT GGTTTCTTAT AACATAATTT TTCCTCAGCC ACATAAGAGG 82619 .......... .......... .......... .......... .......... .......... 393 AATTATATAT ATTCCTTTAT TAGGGATAAT TACGATCCCT AAACACTTCG ATAAACTAGT 82679 .......... .......... .......... .......... .......... .......... 393 TTATTTATAA AATACAAACA ATGTATAAGT CGTGTATACT TTACTAAACA TCATATACTA 82739 .......... .......... .......... .......... .......... .......... 393 ATACACAACA TATATACTTA ATAGTGTGTA TGTTACATTT ATTTTTTAGT AAACTAGTCG 82799 .......... .......... .......... .......... .......... .......... 393 GCTGAACGGT ATATATCTAT AACTTTCTTA ATTTTTTTAG AAATAAACTT CGAACTTTAT 82859 .......... .......... .......... .......... .......... .......... 393 AGATTCACAA TAGTGTAAAC TTTATAGGTT CACTTGATTG ATTGGTATCT ATATGTTTCT 82919 .......... .......... .......... .......... .......... .......... 393 TCTACATGAC TTCAAGTTAC GTCTCCTTTG TTATAATTGT AATTATATTT GATTCTATAA 82979 .......... .......... .......... .......... .......... .......... 393 CATCAGTTTT GTGTTCTTTT TTCTTTTAAA AAATGCTTTT AAGTTAGCTA AAAGCTTGGC 83039 .......... .......... .......... .......... .......... .......... 393 CAAACAGGCA ATAGACAAGT GT-TAAGAGC CTGTTTGGCT CAGCTTAAAA ACTGGTCAAA 83098 | | | | | | || ||||||| ||||| | | |||||||||| ||| ||||| .......AGA AAAAATTATT GTCTAAGAGC TTGTTTAGTT CAGCTTAAAA GCTGATCAAA 446 CTGACTTAAA AACTGGTTTT TGACTTATTT AGCTGTTTGG CAATACTCAA AATAACTTAT 83158 |||||||||| ||||| |||| |||||||||| || ||||||| |||||||||| |||||||||| CTGACTTAAA AACTGATTTT TGACTTATTT AGTTGTTTGG CAATACTCAA AATAACTTAT 506 TTTAAGTT-- -TAAAAAAAC TTATTTTAGG TCAAAAGTTA AAAGCT-GGG TAGAGATGCT 83214 |||||||| |||||||| |||||||| | ||||||||| |||||| ||| ||| | ||| TTTAAGTTAA AAAAAAAAAC TTATTTTAAG CCAAAAGTTA AAAGCTGGGG TAGGGGTGC- 565 TTTTTTTTTT TTAGCTTATA AGCTGTTTTA AGTTGATCAC ATTTTTACGT TTTTGGCCTT 83274 ||||||| |||||||||| |||||||||| |||||| ||| ||||||| | ||||| |||| ---TTTTTTT TTAGCTTATA AGCTGTTTTA AGTTGACCAC ATTTTTATCT TTTTGCCCTT 622 AATATTTTTA TACAATCTCC AAATTACCTA CATAACTCTA ATATCTCTTT CTTTCATTTT 83334 |||||||||| |||||||||| |||||| | | |||||||||| | |||||||| ||| |||||| AATATTTTTA TACAATCTCC AAATTATCCA CATAACTCTA ACATCTCTTT CTTCCATTTT 682 TCCTTTTTCA CGTGTGGATG ATAGATAATT ACTATTACTA ATGAATAAAA ATAAAAAAAA 83394 ||| |||||| ||| ||| |||| TCCATTTTCA CGTTTGG--C ATAG...... .......... .......... .......... 704 TCTTATCTTT CAAGTGATCT ATTCAAATTA TATATTATTA AAATGTAAAA TAAGTTGCAC 83454 .......... .......... .......... .......... .......... .......... 704 ATCTAACTTA AATAAAAATT TATATTCTTC TTATAAATAA TTTGTGATAA TAAAGAAATA 83514 .......... .......... .......... .......... .......... .......... 704 TGTGAATGAT AGACAATTAT TATTACCTAT GGATGAAACT AAAATAAAAT CTTAAATCGT 83574 .......... .......... .......... .......... .......... .......... 704 TCTTTGATCT TTTCAAATTA TATATCTTTA AAATCTATAA TAAGTTTATA TTCCTCTTAT 83634 .......... .......... .......... .......... .......... .......... 704 AAATAATTTG TGATGAGAAA GAAATATGTG AATGATAGCA AAATATAATT ATTTATGGCT 83694 .......... .......... .......... .......... .......... .......... 704 GTAAAATATA AATTAATTAA CTTTTATTAT GTTAACAACT TTTAAGAGTA TTTCAGACAT 83754 .......... .......... .......... .......... .......... .......... 704 TTTGATTTAA AAAGCAGTTT ATCAGCATTT ATTTGCCAAA CACATCAACA ATTTTTTTTT 83814 .......... .......... .......... .......... .......... .......... 704 TAACTTCAGC ACTTTTATCC AAACGCATAA CTGCTTATTT TAAAAATAAG TTTCAGCAAT 83874 ||||||| | |||||||||| ||| |||||| || | | || CAACTTCAAC ACTTTTATCC AAATGCATAA CTTTTAAAAG TA........ .......... 746 TTCAAAAGTA TTTTTTTAAA GCTGTTTT-T ATC-AAGCCC ATCCAAACGG GCACTTATTA 83932 || |||| | | ||| || |||||||||| || || | | .......... .......... .CTTTTTTAA AGCTAAGTCC ATCCAAACGG GCCCTAAGAA 785 TGGCCGTCTA TACGATGTAG GCGACCACAT TACGTGAATA TCATTATTCA CAATAATATC 83992 || | |||| | || | ||| || | || TGAAC-TCTA CATGAATTTT TCGATCAAAA TAA....... .......... .......... 817 GTGTTCAATG TAATTCAATA AGATTTAGAA ATGATTTTAT GTACATAAAT CTTACTCTAT 84052 .......... .......... .......... .......... .......... .......... 817 ACAATTTCCG CTCTATCGAA TGCCAATAGT ATGGTCTAAA TATCTAAATA ATCGTCGCTT 84112 .......... .......... .......... .......... .......... .......... 817 TGGTAATTCA CAATAAATAG AAATAATTTA GTA-AATTAT TTTATATTTA TTTATTTTGA 84171 | ||||||| ||| ||||| |||| |||| | ||| | .......... .......... ACATAATTTT GTATAATTA- ATTATTTTTA AAAAATTT-A 855 CTGATTTTAA AATTAACCCT AAAATTTCAT AAGCAATCTT AAGCGTACCT CCTAAGATTT 84231 ||||| -TGATT.... .......... .......... .......... .......... .......... 860 TAGAACGTAG AAAAACAACA ATTTTCAAAA GCTAATCCCA AATTCCAAAA ATTTTCCGAT 84291 .......... .......... .......... .......... .......... .......... 860 CGGAGATTTT TTTTTCCGAT CAGAAACAGA AAATAAAAAT GGCAGTGAAT CCTCAATTAT 84351 .......... .......... .......... .......... .......... .......... 860 TTCCTAATGG AATGCCAATT CCTTTCCTCA ATGAATTGTT CGTCCTATCT AGACATGGTG 84411 .......... .......... .......... .......... .......... .......... 860 TTGAGTTTGA GGTTGACAAA ATCCCTGGGT GAGTTCATCT TATTTAGCGA ATTCAGAATT 84471 .......... .......... .......... .......... .......... .......... 860 TTCATTTAGG GATTCGTAAA AAAAAATGCT TAATTTTTGA ACTTGAAACC TCGATATGAA 84531 .......... .......... .......... .......... .......... .......... 860 ATTTGAGCCC CTCAATATTC AAAATTTATT GTAATATGTA AGAATTATCT TATCTATATG 84591 .......... .......... .......... .......... .......... .......... 860 GTGTAATTTG TGAATCCTCT CTATTCGTGT ATATGAAGAA AAAAAAAACT CTGAAAGTAT 84651 .......... .......... .......... .......... .......... .......... 860 TTATGTATAA TTTTATGCAA ATATTATGAG AAGTGGAGGT GACAGCAGGG GCGGAGCTAA 84711 .......... .......... .......... .......... .......... .......... 860 TTAGGTTCCT TTTGATAGAA AATTATACTG TTTATATATG GTTAAAATTA TTTTTTGTGC 84771 .......... .......... .......... .......... .......... .......... 860 CCATATCTCT ATGTATATAT ATATATTAGA TGTTGAACCC CTCAATGAAA ATATTGGCTT 84831 .......... .......... .......... .......... .......... .......... 860 CGATGAGGTT AGTTGGAGGA TGAGGACGAT AAAATCGATG TGAAGTGTCA AATATGGTTA 84891 .......... .......... .......... .......... .......... .......... 860 AATGTATTTG CTTTACTTTT TTGAGTTCCT TGTTTTTCAA ACACATGATT CTTGCATTGC 84951 .......... .......... .......... .......... .......... .......... 860 CTTCATTGTT TTTTATTAGT TCATGAAGCT GTGTTAATGA GACTGTTTGT TATCAGTGTA 85011 .......... .......... .......... .......... .......... .......... 860 GGAAAAACAA GAACAAGAGG TACAATCTAC TTGTCGAATA TTCGGATGGT CTTTGTTGCA 85071 .......... .......... .......... .......... .......... .......... 860 AAGATGCCTG TGGATTTCAT TGCTTTTGAT ATGCCTTTGG TATGTTATAC TTCTATGTCT 85131 .......... .......... .......... .......... .......... .......... 860 TTTTACCGTC CTCCGATTTT GCAAACACCA CATGCTAACC AACTCTATTC ACTCATGACT 85191 .......... .......... .......... .......... .......... .......... 860 GGTATAGTTT TTCTGTGGAT CAGAGAAGAA AATCGCGAAA ACTCTCTTTT GTTACTCTTA 85251 .......... .......... .......... .......... .......... .......... 860 CTATTATATT AACAAGTTAC TATGGCGCTC CTTCAGTATC TGCTGTAACT AGACCAACAT 85311 .......... .......... .......... .......... .......... .......... 860 ATGCATAATG TGCAATTCAG AATGGCGATT CCAAGTATAA CGATTAGCGA TATTTCTTTT 85371 .......... .......... .......... .......... .......... .......... 860 GTTGCTTCTT TTTGAGGCTG AACAAAACTT TGTGTATGAT ATGCTTCTGA ATCCTGTAGT 85431 .......... .......... .......... .......... .......... .......... 860 TTTGTTCTCT CTTTGAAATA CATTTTAGAA AGTCGTATTT TACTATGTGC AATTCAGAAT 85491 || .......... .......... .......... .......... .......... .......AAA 863 GGCGCGTAGT AGAGCAGATA TATCACTTTG GTCAAATACG ATCCTTCTCC TATGAAACTG 85551 | | || | |||| || | || || | CGAGAGT-TT AGAG-AG-TT GATTACCAAG .......... .......... .......... 890 TACTGTTTGT TTCTAAAGCT TTGACATGTT AATTGAATGG TATTATGACA TGATTTATAT 85611 .......... .......... .......... .......... .......... .......... 890 CTGATTTGTA TATTAAGCAC AACATTGCTA GATACAACAT CTGCTAGGAA GCATGTTATG 85671 .......... .......... .......... .......... .......... .......... 890 GCATATATTG TTCGGATATT TGTTAAGATG CATGACATGA ATTCGTGTTC ATCTGTTCTA 85731 .......... .......... .......... .......... .......... .......... 890 TGTTTTTGTT CAGAGAAATA ATCTGGTAAG TTGGTGACTT TGCTGAGCAA GAAGTTACAA 85791 .......... .......... .......... .......... .......... .......... 890 AACTGAGAAA TGTAAGCTAC ATTTGCTTTG ACAAAGTTTA TTTACCTTTT TTCATTCTGC 85851 .......... .......... .......... .......... .......... .......... 890 AGCTTTTTGT TTCTGATGAA ATATTTACGC AACCAGTATT CCACTGCAAC AACATCTCTG 85911 .......... .......... .......... .......... .......... .......... 890 GATTTGTAGA TCCGGTAAGC TGAATTACTA TTTTCGAATA TACTCAATGT TGTCTAAGGT 85971 .......... .......... .......... .......... .......... .......... 890 GCACTTTAAG CGCACTTAAG GGTGAAGCGA GGTGCAAAGT ATGTTGAGCT TAGCTGGCGC 86031 .......... .......... .......... .......... .......... .......... 890 GTTAGTGCCG TCATCAAGGC TCTAGCACCT TGTCAATGAC TCTAAATGCT AAATTCTCTC 86091 .......... .......... .......... .......... .......... .......... 890 CTTATATTTG TTATTATAAT CATTAGTCTA GGACTACACA TACATATTTG TGATTTTCTC 86151 .......... .......... .......... .......... .......... .......... 890 CACCACATTT TATCTATGCT TATAGCCCCA ACGAACCTTA GAGACTTTTT GCTCTTTTTG 86211 .......... .......... .......... .......... .......... .......... 890 CTTTCGAAAA CACTGGATTA TGTGCGTGCA ACATTAGATA ACCGATTATG GCTATGTTCA 86271 .......... .......... .......... .......... .......... .......... 890 GGTTGTTCCA GATAATGAAA ACAGTGCCTT GTACTCCACA CATACATTCA AGATTTTGTT 86331 .......... .......... .......... .......... .......... .......... 890 CAAGGATGGT GGTTGTGGGA CTTTCGTGCC ATTATTTTTC AACTTAATCG CCTCTGTGAG 86391 .......... .......... .......... .......... .......... .......... 890 ACGAGCTCAG CAACAGTCTG GGGTACAGCC ACGGGCAGAC CCTCTCCAAG CTGCACAAAC 86451 .......... .......... .......... .......... .......... .......... 890 TCCAGTTGAT GAGATGATTA GACATGCGTA TGTCAACGTT GCTTTCTCCT TTTTACAACG 86511 .......... .......... .......... .......... .......... .......... 890 ACATTAGTTA ACGATCCTTT CCCCCCCTCA ATATGCTAAC TGGTTTTACT GAATTCTTAT 86571 .......... .......... .......... .......... .......... .......... 890 GGTGTTTGTT GATTTTGCAG TTATGTCGAT CCCAATGATC CAACGAAAAT CTTCTTGCAG 86631 .......... .......... .......... .......... .......... .......... 890 CAGCCTACTC CAGAGTCGCA ACTTAGGCGT CGTTCATACC AATCACAACC TGCTTAAAAC 86691 .......... .......... .......... .......... .......... .......... 890 TCAATATACT TCTTGTTCAA TGCAACCTGA ATTGTGAATT GTTCATTTCC TGATGTACTT 86751 .......... .......... .......... .......... .......... .......... 890 TTTCTCTTGG TGATTGCTTT GATTCTATTA AAATATATAA ACAAACTAGA AGAAAATGGG 86811 .......... .......... .......... .......... .......... .......... 890 CTTGCATGTG TATATGCAGT TGGTATACAT ATTTTCTTCA AGTGTACAGA GGTTATAATA 86871 .......... .......... .......... .......... .......... .......... 890 TATTTAATGG TACGTTTATC TCGATATATG TGATGTAGAC GTCTACTCTA ATGCAAGCAT 86931 .......... .......... .......... .......... .......... .......... 890 TAGTGATTAT TTCCAGTTTT CTACAGATTG AACACGTGAC TTATATCACG TGGAGACAAT 86991 .......... .......... .......... .......... .......... .......... 890 TTGACTGTCA CTCCAAGACT CCTCTTGTTA ATATATAGTA CAGATGTACT CAAGTGACCA 87051 .......... .......... .......... .......... .......... .......... 890 AAAAATGCTT TAAATACAGG AGGTAAAATA ATGCAGCATG TTTCTGAATA AACAATATGT 87111 .......... .......... .......... .......... .......... .......... 890 TACAAAATCA CCTTTTATTC AACAGAACAA AAACTTAAAA AGGAAAATCT CTCCATCTAG 87171 .......... .......... .......... .......... .......... .......... 890 CATACAAAAA GAAATATAGT GGTTAAATTT GCTTCAAAAC TTTTTCAGCT GCAGCTACAG 87231 | ||| |||| .......... .......... .......... .......... ........-T AGAGCAACAG 901 TCCTTT 87237 | | || TTCCTT 907 hqPGS_C04HBa0127E11.1+_SGN-U313328- (83047 83358,83815 83856) ******************************************************************************** EST sequence 26 -strand 906 n (File: SGN-U334276-) 1 GATCTCGGTC TATCTTTGAT TTATAAGGGA TTTTGCNGAT TTCGCCCTAT GGTTAAAAAA 61 TGAGCTGATT TACAAAAAAT TAAACGCGAA TTTTAACAAA ATATTAACGC TTACAATTTG 121 CCATTCGCCA TTCAGGCTGC GCAACTGTTG GGAAGGGCGA TCGGTGCGGG CCTCTTCGCT 181 ATTACGCCAG CTGGCGAAAG GGGGATGTGC TGCAAGGCGA TTAAGTTGGG TAACGCCAGG 241 GTTTTCCCAG TCACGACGTT GTAAAACGAC GGCCAGTGAA TTGTAATACG ACTCACTATA 301 GGGCGAATTG GGTACCGGGC CCCCCCTCGA GTTTTTTTTT TTTTTTTTTA GCTTATAAGC 361 TGTTTTAAGT TGATCACATC TTTATCTTTT TGCCCTTAAT ATTTTTATAC AATTTCCAAG 421 TTACACATAT AACCCTAACA TCTCTTTCTT CCATTTTTCG CTTTTCACGT TTGGCATAAC 481 AACTTCAGCA CTTTTATCCA AATGCATAAC TGTTTATTTT AGAAATAAGT TTCAGCACTT 541 TCAAAAGTAC TTTTTTAAAG CTGTTTTTAT TAAGCCCATC CAAACGGGCC CTAAATAAGA 601 AAATATTCTG ACAAAAATTC TCATAAATTA ATTTAGACTA TATATTATTT TTAATTTCTT 661 ACCCAGTAAA CTAATAAATG AGTAGGTCAA TAACTTTAAT TTCCCAAACT TAGGTGGATT 721 AGACATGTTA GGTTGATAAA CTAACTCTGT CACCTTTATC TATATTTATG TCTTTAATAA 781 TATATGAGAT TTGACTTCGT TATATATATC GAACATCGAA TCGAAAAAAA CTGGTTTAAG 841 CTGAGCCTGC AGCCCGGGGG ATCCACTAGT TCTAGAGCGG CCGCCACCGC GGTGAGCTCC 901 AGCTTT Predicted gene structure (within gDNA segment 79244 to 87694): Exon 1 83214 83351 ( 138 n); cDNA 337 474 ( 138 n); score: 0.891 Intron 1 83352 83809 ( 458 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.84) Exon 2 83810 83934 ( 125 n); cDNA 475 599 ( 125 n); score: 0.880 Intron 2 83935 85744 (1810 n); Pd: 0.000 (s: 0.88), Pa: 0.965 (s: 0) Exon 3 85745 85756 ( 12 n); cDNA 600 610 ( 11 n); score: 0.833 MATCH C04HBa0127E11.1+ SGN-U334276- 0.886 275 0.304 C PGS_C04HBa0127E11.1+_SGN-U334276- (83214 83351,83810 83934,85745 85756) Alignment (genomic DNA sequence = upper lines): TTTTTTTTTT TTTAGCTTAT AAGCTGTTTT AAGTTGATCA CATTTTTACG TTTTTGGCCT 83273 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||| |||||| ||| TTTTTTTTTT TTTAGCTTAT AAGCTGTTTT AAGTTGATCA CATCTTTATC TTTTTGCCCT 396 TAATATTTTT ATACAATCTC CAAATTACCT ACATAACTCT AATATCTCTT TCTTTCATTT 83333 |||||||||| ||||||| || ||| |||| | ||||| || || ||||||| |||| ||||| TAATATTTTT ATACAATTTC CAAGTTACAC ATATAACCCT AACATCTCTT TCTTCCATTT 456 TTCCTTTTTC ACGTGTGGAT GATAGATAAT TACTATTACT AATGAATAAA AATAAAAAAA 83393 ||| ||||| |||| ||| TTCGCTTTTC ACGTTTGG.. .......... .......... .......... .......... 474 ATCTTATCTT TCAAGTGATC TATTCAAATT ATATATTATT AAAATGTAAA ATAAGTTGCA 83453 .......... .......... .......... .......... .......... .......... 474 CATCTAACTT AAATAAAAAT TTATATTCTT CTTATAAATA ATTTGTGATA ATAAAGAAAT 83513 .......... .......... .......... .......... .......... .......... 474 ATGTGAATGA TAGACAATTA TTATTACCTA TGGATGAAAC TAAAATAAAA TCTTAAATCG 83573 .......... .......... .......... .......... .......... .......... 474 TTCTTTGATC TTTTCAAATT ATATATCTTT AAAATCTATA ATAAGTTTAT ATTCCTCTTA 83633 .......... .......... .......... .......... .......... .......... 474 TAAATAATTT GTGATGAGAA AGAAATATGT GAATGATAGC AAAATATAAT TATTTATGGC 83693 .......... .......... .......... .......... .......... .......... 474 TGTAAAATAT AAATTAATTA ACTTTTATTA TGTTAACAAC TTTTAAGAGT ATTTCAGACA 83753 .......... .......... .......... .......... .......... .......... 474 TTTTGATTTA AAAAGCAGTT TATCAGCATT TATTTGCCAA ACACATCAAC AATTTTTTTT 83813 | .......... .......... .......... .......... .......... ......CATA 478 TTAACTTCAG CACTTTTATC CAAACGCATA ACTGCTTATT TTAAAAATAA GTTTCAGCAA 83873 |||||||| |||||||||| |||| ||||| |||| ||||| ||| |||||| ||||||||| ACAACTTCAG CACTTTTATC CAAATGCATA ACTGTTTATT TTAGAAATAA GTTTCAGCAC 538 TTTCAAAAGT ATTTTTTTAA AGCTGTTTTT ATCAAGCCCA TCCAAACGGG CACTTATTAT 83933 |||||||||| | |||||||| |||||||||| || ||||||| |||||||||| | || | || TTTCAAAAGT ACTTTTTTAA AGCTGTTTTT ATTAAGCCCA TCCAAACGGG CCCTAAATAA 598 GGCCGTCTAT ACGATGTAGG CGACCACATT ACGTGAATAT CATTATTCAC AATAATATCG 83993 | G......... .......... .......... .......... .......... .......... 599 TGTTCAATGT AATTCAATAA GATTTAGAAA TGATTTTATG TACATAAATC TTACTCTATA 84053 .......... .......... .......... .......... .......... .......... 599 CAATTTCCGC TCTATCGAAT GCCAATAGTA TGGTCTAAAT ATCTAAATAA TCGTCGCTTT 84113 .......... .......... .......... .......... .......... .......... 599 GGTAATTCAC AATAAATAGA AATAATTTAG TAAATTATTT TATATTTATT TATTTTGACT 84173 .......... .......... .......... .......... .......... .......... 599 GATTTTAAAA TTAACCCTAA AATTTCATAA GCAATCTTAA GCGTACCTCC TAAGATTTTA 84233 .......... .......... .......... .......... .......... .......... 599 GAACGTAGAA AAACAACAAT TTTCAAAAGC TAATCCCAAA TTCCAAAAAT TTTCCGATCG 84293 .......... .......... .......... .......... .......... .......... 599 GAGATTTTTT TTTCCGATCA GAAACAGAAA ATAAAAATGG CAGTGAATCC TCAATTATTT 84353 .......... .......... .......... .......... .......... .......... 599 CCTAATGGAA TGCCAATTCC TTTCCTCAAT GAATTGTTCG TCCTATCTAG ACATGGTGTT 84413 .......... .......... .......... .......... .......... .......... 599 GAGTTTGAGG TTGACAAAAT CCCTGGGTGA GTTCATCTTA TTTAGCGAAT TCAGAATTTT 84473 .......... .......... .......... .......... .......... .......... 599 CATTTAGGGA TTCGTAAAAA AAAATGCTTA ATTTTTGAAC TTGAAACCTC GATATGAAAT 84533 .......... .......... .......... .......... .......... .......... 599 TTGAGCCCCT CAATATTCAA AATTTATTGT AATATGTAAG AATTATCTTA TCTATATGGT 84593 .......... .......... .......... .......... .......... .......... 599 GTAATTTGTG AATCCTCTCT ATTCGTGTAT ATGAAGAAAA AAAAAACTCT GAAAGTATTT 84653 .......... .......... .......... .......... .......... .......... 599 ATGTATAATT TTATGCAAAT ATTATGAGAA GTGGAGGTGA CAGCAGGGGC GGAGCTAATT 84713 .......... .......... .......... .......... .......... .......... 599 AGGTTCCTTT TGATAGAAAA TTATACTGTT TATATATGGT TAAAATTATT TTTTGTGCCC 84773 .......... .......... .......... .......... .......... .......... 599 ATATCTCTAT GTATATATAT ATATTAGATG TTGAACCCCT CAATGAAAAT ATTGGCTTCG 84833 .......... .......... .......... .......... .......... .......... 599 ATGAGGTTAG TTGGAGGATG AGGACGATAA AATCGATGTG AAGTGTCAAA TATGGTTAAA 84893 .......... .......... .......... .......... .......... .......... 599 TGTATTTGCT TTACTTTTTT GAGTTCCTTG TTTTTCAAAC ACATGATTCT TGCATTGCCT 84953 .......... .......... .......... .......... .......... .......... 599 TCATTGTTTT TTATTAGTTC ATGAAGCTGT GTTAATGAGA CTGTTTGTTA TCAGTGTAGG 85013 .......... .......... .......... .......... .......... .......... 599 AAAAACAAGA ACAAGAGGTA CAATCTACTT GTCGAATATT CGGATGGTCT TTGTTGCAAA 85073 .......... .......... .......... .......... .......... .......... 599 GATGCCTGTG GATTTCATTG CTTTTGATAT GCCTTTGGTA TGTTATACTT CTATGTCTTT 85133 .......... .......... .......... .......... .......... .......... 599 TTACCGTCCT CCGATTTTGC AAACACCACA TGCTAACCAA CTCTATTCAC TCATGACTGG 85193 .......... .......... .......... .......... .......... .......... 599 TATAGTTTTT CTGTGGATCA GAGAAGAAAA TCGCGAAAAC TCTCTTTTGT TACTCTTACT 85253 .......... .......... .......... .......... .......... .......... 599 ATTATATTAA CAAGTTACTA TGGCGCTCCT TCAGTATCTG CTGTAACTAG ACCAACATAT 85313 .......... .......... .......... .......... .......... .......... 599 GCATAATGTG CAATTCAGAA TGGCGATTCC AAGTATAACG ATTAGCGATA TTTCTTTTGT 85373 .......... .......... .......... .......... .......... .......... 599 TGCTTCTTTT TGAGGCTGAA CAAAACTTTG TGTATGATAT GCTTCTGAAT CCTGTAGTTT 85433 .......... .......... .......... .......... .......... .......... 599 TGTTCTCTCT TTGAAATACA TTTTAGAAAG TCGTATTTTA CTATGTGCAA TTCAGAATGG 85493 .......... .......... .......... .......... .......... .......... 599 CGCGTAGTAG AGCAGATATA TCACTTTGGT CAAATACGAT CCTTCTCCTA TGAAACTGTA 85553 .......... .......... .......... .......... .......... .......... 599 CTGTTTGTTT CTAAAGCTTT GACATGTTAA TTGAATGGTA TTATGACATG ATTTATATCT 85613 .......... .......... .......... .......... .......... .......... 599 GATTTGTATA TTAAGCACAA CATTGCTAGA TACAACATCT GCTAGGAAGC ATGTTATGGC 85673 .......... .......... .......... .......... .......... .......... 599 ATATATTGTT CGGATATTTG TTAAGATGCA TGACATGAAT TCGTGTTCAT CTGTTCTATG 85733 .......... .......... .......... .......... .......... .......... 599 TTTTTGTTCA GAGAAATAAT CTG 85756 | ||||| | ||| .......... .A-AAATATT CTG 610 hqPGS_C04HBa0127E11.1+_SGN-U334276- (83214 83351,83810 83934) ******************************************************************************** EST sequence 5 +strand 1397 n (File: SGN-U313325+) 1 GTCACTTCTC AACCAAATAC ATAGCTATTT GGATCCTATA TATGAGAAAG AAGAGAAGCA 61 TTGCATTCAA AAATCCCAAA AATTCTCATC TTTATCAGAA ATTAACGAAA ACAACAGTTT 121 TTTCAGTGGG AAAATGAGTG ATTTGAAGTC GAAGTTCTTG GATGTTTACA AAATACTGAA 181 ATCTGAGCTT CTTAATGATC CAGATTTTGA GTTTACTGAT GATGGTCGTC AATGGGTCGA 241 ACGGATGTTG GACTACAATG TACCTGGAGG AAAGCTGAAC CGTGGGCTCT CTGTTATTGA 301 TAGCTACAGT TTGTTGAAAG AAGGGAAAGA ACTAACCAGT GAGGAAATCT TTCAAACATC 361 TTCCCTTGGC TGGTGCATTG AATGGCTTCA AGCATATTTC CTTGTTCTTG ATGATATGAT 421 GGATGGGTCT CATACACGCC GAGGTCAAAA ATGCTGGTTC AGATTACCCA AGGTTGGCAT 481 GATTGCTGCT AATGACGGCA TACTTCTTCG CAACCACATA CCAAGAATTC TTAAGAAGCA 541 CTTTAGAGGA AAGCCTTATT ATGTTGATCT TCTTGAATTG TTTAATGAGG TGGAATTTCA 601 GACTGCCTCT GGACAAATGA TAGATTTGAT TACCACACAT TCTGGAGAGA AAGATTTATC 661 AAAATACTCG TTGCCTATTC ATAGGCGGAT TGTCCAGTAT AAAACTGCTT ATTATTCATT 721 TTATCTCCCA GTGGCATGTG CACTTCTTAT GGCAGGAGAG AATCTTGACA ATCATGTTAA 781 TGTCAAGAAC ATACTACTCG AAATGGGAAT ATATTTCCAA GTTCAGGATG ATTACTTGGA 841 CTGCTTTGCT GATCCAGAGG TATTGGGTAA GATTGGCACG GATATTCAAG ATTTCAAGTG 901 CTCTTGGTTG GTAGTGAAAG CCCTAGAACA CTGCAATGAT GAGCAAAAAA AGTTATTACA 961 TGAAAACTAT GGAAAAGATG ACCCTGCTTG TGTTGCTAAA GTAAAGGCGC TCTACAATGA 1021 TCTCAAACTT GAGGATGTGT ACCTGGAATA TGAGAGGAGT ACATATGAAA AGCTGATCAA 1081 CTCCATTGAA GCTCAACCAA GCAAAGCAGT GCAAGCAGTT CTGAAGTCAT TCTTGGCAAA 1141 GATATACAAA AGGCAGAAGT AGGAGATAAA GAACTTGTTT GGTTCAGCTT AAAAGCTGGT 1201 CAAACTAACT TAAAAGCTAA TTTTTGACTT ATTTAGTTGT TTGGCAATCC TCAAAATAAC 1261 TTATTTTAAG TTTTAAAAAA AACTTATTTT AAGCCAAAAG TTAAAAGCTG GGGTAAGAGT 1321 GCTTCTTTTT TTCAACTTAT AAACTATTTT AAGTTGACCA CATTTTTACC TTTTTAAAAA 1381 AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 70315 to 84664): Exon 1 73958 74002 ( 45 n); cDNA 1016 1059 ( 44 n); score: 0.622 Intron 1 74003 77707 (3705 n); Pd: 0.401 (s: 0.62), Pa: 0.785 (s: 0) Exon 2 77708 77713 ( 6 n); cDNA 1060 1065 ( 6 n); score: 0.833 Intron 2 77714 77950 ( 237 n); Pd: 0.000 (s: 0), Pa: 0.965 (s: 0) Exon 3 77951 77970 ( 20 n); cDNA 1066 1085 ( 20 n); score: 0.450 Intron 3 77971 80693 (2723 n); Pd: 0.000 (s: 0), Pa: 0.903 (s: 0) Exon 4 80694 80727 ( 34 n); cDNA 1086 1118 ( 33 n); score: 0.647 Intron 4 80728 81190 ( 463 n); Pd: 0.000 (s: 0), Pa: 0.752 (s: 0) Exon 5 81191 81205 ( 15 n); cDNA 1119 1132 ( 14 n); score: 0.600 Intron 5 81206 83022 (1817 n); Pd: 0.000 (s: 0), Pa: 0.558 (s: 0.58) Exon 6 83023 83262 ( 240 n); cDNA 1133 1369 ( 237 n); score: 0.798 PPA cDNA 1376 1397 MATCH C04HBa0127E11.1+ SGN-U313325+ 0.798 360 0.258 C PGS_C04HBa0127E11.1+_SGN-U313325+ (73958 74002,77708 77713,77951 77970,80694 80727,81191 81205,83023 83262) Alignment (genomic DNA sequence = upper lines): AATGATTTCT TATGGTTAAG AAGTCTACGT CGAAAACGAT ACGAAGTTGA TCTCCTTATA 74017 |||||| || | | | | | || ||| | ||| | || | || AATGATCTCA AAC-TTGAGG ATGTGTACCT GGAATATGAG AGGAG..... .......... 1059 TAGAATTTGG ATAATTTTCT TTTTATAAGT TATTTTTGGG ATTAAATTTT ATTCTAAGAT 74077 .......... .......... .......... .......... .......... .......... 1059 CTATTTTTAT ATAATACTAG AGTCAGATTC TTATATTATA TTGTTCGCGC TCTAGTTAAT 74137 .......... .......... .......... .......... .......... .......... 1059 GAGATCTGGA CGTGCAGGAA GCATTAAGAA ATTTTTCAAT AGTAAAAAAA GAATGATAAA 74197 .......... .......... .......... .......... .......... .......... 1059 TTAGTCTCCT TTCTTCCTTC ATAAGTTAAC TTTTGAAGTC GATTATCATT TTATATTAGT 74257 .......... .......... .......... .......... .......... .......... 1059 GATATATTTA AAATAAAATG AATTAATTGA TTAAAGGATC ATTTAAGTAT TGTAAAGGTT 74317 .......... .......... .......... .......... .......... .......... 1059 TCACTAAAGT TATATTTTAA ATTTTTCTCT CAATATAATT ATCTAAGTTT TAAAATTATT 74377 .......... .......... .......... .......... .......... .......... 1059 TTTTTGAATT TTTTGGTATT AAAGTCATTC TAACTATAAT ATTATGTCTT ACAAAAACTT 74437 .......... .......... .......... .......... .......... .......... 1059 CATTCTCTTA TGAGATTTCT TAAATAACAT GTCATGTAAC CTTTATTCTC CTTGACATAA 74497 .......... .......... .......... .......... .......... .......... 1059 AATATAAAAA TAATTATTAT GACATGGCAT GTAAATTAAT AAATCTAGCT AGGGAAAAAG 74557 .......... .......... .......... .......... .......... .......... 1059 ATTTTATAAA ACATAAAATT GAATAATCTT ATAGTAAAGA AAAAAAATAA TTAAAAAGTG 74617 .......... .......... .......... .......... .......... .......... 1059 ATTTTTCATA GAATCTTCTC AATACTTGAA TAATTATATA TGGTGAAAGA AATTAAAAAT 74677 .......... .......... .......... .......... .......... .......... 1059 GACTATAATA GAATCTTCTC AATTATTGAA GGACTATAAA GGAAATTAAT TTATTTTAAA 74737 .......... .......... .......... .......... .......... .......... 1059 ATCTTATTTA AAATATACTT TTGTTTGGAC TTTATTGGTT TAAAACTATA TTTTAAAATT 74797 .......... .......... .......... .......... .......... .......... 1059 TTATTTTGAA AACTACTTTC ATACGTAAGT GACTTCTTGT TATTTTCTCG TGTCTTTTTT 74857 .......... .......... .......... .......... .......... .......... 1059 CATGCATATT ATTATCTAAT AATTAATTAA TTAATTATCC CATTTACTAC CTACAAAATT 74917 .......... .......... .......... .......... .......... .......... 1059 CAATTTGATA TAAATGAATT AGTAGGCATT TGGTCATATA TAATTATTTA ATTTTTTAAT 74977 .......... .......... .......... .......... .......... .......... 1059 TACAATTAGG CACATAAAGG TAGAAGGAAT CAAATTCTTA AAAAATAATT ATTGGTGTAT 75037 .......... .......... .......... .......... .......... .......... 1059 TATGACTTAA TATCCATAAT AATAGTTCCT TTTTAACGAG CCTTATCCAT TTGAAATTTT 75097 .......... .......... .......... .......... .......... .......... 1059 GATGTTGACA ATTTAACAAC CATGACAAAT TTCTTCATCC AATACCAAAT TTTGCTATAA 75157 .......... .......... .......... .......... .......... .......... 1059 CCAATTCTAT GTTAAAAATA GGCTCAAATT ATTTAGCATT TTCGATGCGT TCGTTACGAA 75217 .......... .......... .......... .......... .......... .......... 1059 AGAAAAATAT TTTTAAAAAA AATATGTGAG TTTTTTTTTT ACCTATTTTG TTTTATCTTT 75277 .......... .......... .......... .......... .......... .......... 1059 TGAAATAACA TAATATACTC AGTGAGATCT CATTAAGTAG GGTTAAATGA GGATAAAATA 75337 .......... .......... .......... .......... .......... .......... 1059 TACGCATATA TTATCAGTAC TCCGTGGGGG TAGAGAGATG TTTTCAAAAG ACCCTCGACT 75397 .......... .......... .......... .......... .......... .......... 1059 GATCAACAAC AACTAATAAA AGAAGAAAAC ATAACGGTTA ATAAAAGATC GTACTTGTAG 75457 .......... .......... .......... .......... .......... .......... 1059 TGTCTGCACA AGAAAAATAA ATAACAACAA ATCAGTGTGA TAATAATAGA GATACTATAA 75517 .......... .......... .......... .......... .......... .......... 1059 ACAATATATA ATAAGACTTA AGAGCTACAA CAAATGTACG ACTAGTGCTA CAACATGCAT 75577 .......... .......... .......... .......... .......... .......... 1059 TAACAAGCTT AAACAAGACA ACACTCTATC CCTACTGACC TTTTACTCTA ATACGTGATT 75637 .......... .......... .......... .......... .......... .......... 1059 TCAACTTCTT CCTATTTAAG TGAATTCTGT AATATAAAGT AGCGTCATTT CATATGTTTA 75697 .......... .......... .......... .......... .......... .......... 1059 ATCACCTCTT CCCAATACTT TTTCAAGTTA GCCCTTACAT GCTACAACTA ATCTCTCACA 75757 .......... .......... .......... .......... .......... .......... 1059 TCTCCTAACT GGAGCATTGA CACACCTCCT CTACACATAC TCAGATCATC TTACCTTTAC 75817 .......... .......... .......... .......... .......... .......... 1059 GTAAGCAAAA AAAGTGTAGG AGTTCGATCC TCTTCAAAAC ATAATATCAA ATGCTCGTCT 75877 .......... .......... .......... .......... .......... .......... 1059 GAAAGCTTGA AGCATGCGAA CTTGAGATTC TTGAAATTAG AATTATTCGA TAACGTATTA 75937 .......... .......... .......... .......... .......... .......... 1059 TAAAATTCTA TCAATCATCT ATATCTTATG AATGAAAAGT CTACTTTAAA ATAATCTACT 75997 .......... .......... .......... .......... .......... .......... 1059 ACTTATATTT CAAAGTCTCT TTCTTGTTTT TTCTCATATT TTCTATTCCC ATCAAGTTAA 76057 .......... .......... .......... .......... .......... .......... 1059 ATAATTTAAT CTCAACTTTA CGTTGATACA ATAATACGTA TTACTTAACA AAGATTACAT 76117 .......... .......... .......... .......... .......... .......... 1059 GACAACATAC AAATAAAATA TACCATTTGC ATCGAAAATA AAGAGTCCGC ATAAAAATTA 76177 .......... .......... .......... .......... .......... .......... 1059 TTCATTTTTC CTCTTTGTGA TAGACATGAA GTGTTCAAAG CTTATTTACT TTTGGTTAAA 76237 .......... .......... .......... .......... .......... .......... 1059 CATTAACCAC CATGTTGGAA CACATGCAAC ATTTTATTGA CCATTTTGGT TTATAATTTA 76297 .......... .......... .......... .......... .......... .......... 1059 TTTCAATTTT TTTTATATTA AATAAGTAGA CTAGTCAAGT CATTTTAAAA CTCAAGCCTC 76357 .......... .......... .......... .......... .......... .......... 1059 AACAAACCCA ATTATTGATC AAAAAATATA CACAACTTTG TGGGCCATAC TTTTAAAACA 76417 .......... .......... .......... .......... .......... .......... 1059 AATTGTGGGA CCCACCAACC TAACAACAAT AATAATTAAA TAGTGAAATG TAGGGGGACC 76477 .......... .......... .......... .......... .......... .......... 1059 AATTTTTTAT TTTTTTTAAA CTTTTAAATA AAAATAGGAA AAATATGTAT TAAAAAATTT 76537 .......... .......... .......... .......... .......... .......... 1059 AGCTTCAAAT TAAAATTTCC CTCTATGGAG ACTTTTTTGG TCCACAGTAC GGATTAATAT 76597 .......... .......... .......... .......... .......... .......... 1059 GACCCACTCT GACAACCTTT AAAGCTTAAA TTCTCCCTAT TTTTTCCCTA AAAGATAACA 76657 .......... .......... .......... .......... .......... .......... 1059 TTATGATAAA ATGGGGAATT TTATATACCT AAGTTTCATT CTCCTTTTTC ATTAATAATA 76717 .......... .......... .......... .......... .......... .......... 1059 TTTTTCTTTC TTGAGTACAT TTCACATGAA TACAAAATCT AATTTAATTG ATATTGTATG 76777 .......... .......... .......... .......... .......... .......... 1059 AATACAATTT GATGGTATTA TATATATATA TATACATAAG TAACTATTAA TGAAATTATC 76837 .......... .......... .......... .......... .......... .......... 1059 GGAATAAATT AAATTAATAT TTAAGTAACT CGAGCGATTA AAAAAAAAGA AAAACAGAGT 76897 .......... .......... .......... .......... .......... .......... 1059 AATAAATTGT CTAATTAGTT GAAATGTAAA CTCGATTCAT TCGAATGACT TTACGATATA 76957 .......... .......... .......... .......... .......... .......... 1059 TTTTTTCTTA AATATATGTA AAATCAAATA TAAGTGCATT TAAAACTAAC TTATTAATTC 77017 .......... .......... .......... .......... .......... .......... 1059 AATATATGTG TTTTCAAAGT ATGAGAGAGA CTAACAACTA ATTATGTTTA AAAAAAATAT 77077 .......... .......... .......... .......... .......... .......... 1059 TAAATATACA CATCTAAATA CTTTAACTAA TTTCTGCTAT GTCAAGTTTT AACACTTCAA 77137 .......... .......... .......... .......... .......... .......... 1059 TATGTCAAGT TTTAACACTT CAAACGTATA AATACTCCTC TAAAATTCAT GTGTCAGTTA 77197 .......... .......... .......... .......... .......... .......... 1059 GGTATTCATG AAATACAATA AAAAAGGAGA ATGCACAACT ATCCTTCTAG AATATGATTG 77257 .......... .......... .......... .......... .......... .......... 1059 AAGTTTTAGA GACATATCTT AACTAAACTA ACATCCTATT ATCTCTATGA ACTTATTTTT 77317 .......... .......... .......... .......... .......... .......... 1059 TTATTGTAAT TATATACATC TTTTGTCTTA CGTGACACAC TCCATGACCC CACACAATTG 77377 .......... .......... .......... .......... .......... .......... 1059 AGACATGTAA GAGATATTTG AATGCCACGT AACTCAAAAA AATGCATAAA ATTACAAAAA 77437 .......... .......... .......... .......... .......... .......... 1059 AGAAAATGTT AAAGGGTGGT AAGACCTTAG TTTGAATATG TCATAGAGAG AACTCTAGTA 77497 .......... .......... .......... .......... .......... .......... 1059 GAAAGAAATT AGAAAGATCA AAAAATTTCC CAATACATTT TCTTTTAGAA TTTTTCAAAA 77557 .......... .......... .......... .......... .......... .......... 1059 ATATTAATTT CGAAAAAAAA AAAAATTATT AATTTTTCGA TAGTCATTTG AAACTCCAAT 77617 .......... .......... .......... .......... .......... .......... 1059 AATGGTGAAT AAGTGAAGTT GATTTAGATA GTAGCAACTA ATTTTTTTTT TTAATACACA 77677 .......... .......... .......... .......... .......... .......... 1059 TAGATATGTA TTATGTTATG TAAATGACAG TATATAGTTT CACAATATTC CTATAAAGAA 77737 || ||| .......... .......... .......... TACATA.... .......... .......... 1065 CATTAAAGGA AGTAGAATAC ACTGCATTTT AAAAATTTAT GAATGACTTG TACAAATAAA 77797 .......... .......... .......... .......... .......... .......... 1065 ATCTAGCAAA AAAAATACAT TAAACTTAAT CTTAGTTTTG TTAAATAAAT CTTCAATTTT 77857 .......... .......... .......... .......... .......... .......... 1065 AAATATTCAA CATCTAGACG CTTTAACTAA TTTCTTCTAT GTCAAATTTT AAAACTTTAA 77917 .......... .......... .......... .......... .......... .......... 1065 ATGTATAAAT ACTTCTTCAA AATTTATGTG TAGTTAGGTA TTCATGAAAC ACAATAAAAA 77977 | | | || || || .......... .......... .......... ...TGAAAAG CTGATCAACT CCA....... 1085 GGGAGAATGC ACATGCACAA GTACCCTTCT AGACTATGAT CGAAGTTTCA GAGGCACACC 78037 .......... .......... .......... .......... .......... .......... 1085 TTGATTAAAC TAATGTCTTA TTATCCTCTG AACTTATTTT TTGCTTAATT ATATACACCT 78097 .......... .......... .......... .......... .......... .......... 1085 TTTGTCTTAC GTGACACACT CCATGGCTCC ACACAATTGA GGCGTTGTGC ACAAAATTAC 78157 .......... .......... .......... .......... .......... .......... 1085 AAAAAAAAGA AAATGTTAAA GGGGTAGTAA GATCTTAGTT TAGTTAAGGC GTGTCTCATG 78217 .......... .......... .......... .......... .......... .......... 1085 AATTTCGGTC ATACTCATGC CAATAAAAAT GAATTGAAAT ATGTATTATC AGTTAAGATC 78277 .......... .......... .......... .......... .......... .......... 1085 AAGTTAAAAA ACATACATTT TCAAAGTTGG AGTTTTTTCG TACATCCAAA GAAAGTGACC 78337 .......... .......... .......... .......... .......... .......... 1085 GATAAAAATT ATGATATAGT GATGAGTTAC TCATTCGTTC TTAATTAAGA GAGCGCAAAT 78397 .......... .......... .......... .......... .......... .......... 1085 TCAAATTTAA TCGAACGTCG ACCGACCGAC GAAAAGAAAC CACGGAAAGA GAAGTGTGAA 78457 .......... .......... .......... .......... .......... .......... 1085 AAATGGAAAG AGATGGTGAA AATTTTTGTG TGAATGTGAA GATTGAAGAG AGAGAGAGAG 78517 .......... .......... .......... .......... .......... .......... 1085 AGGGGAGTGA GCGCGTGAAA GAGGGTAGTG GGTACTGTAC TGGATTGCTA GCAGGGATGA 78577 .......... .......... .......... .......... .......... .......... 1085 GCTGTGAATA TATGTGTAAG AGAGTAGTAC TAATGTCCCC ACCACCCATG TGACCTTCTT 78637 .......... .......... .......... .......... .......... .......... 1085 CCTGTCACCA CCAGTTCCTG CTTCTCAATC ATTAGTCCTA TTCCCCCCTC CCCCTCCATT 78697 .......... .......... .......... .......... .......... .......... 1085 GTTGTATCTC TACTATTTTT ACATACTATT TGTTTTTTGG TTCTACTCTC ATTCTCTTGC 78757 .......... .......... .......... .......... .......... .......... 1085 TATACTTTAC AAGAGTGGTG GATCTTGTAT TTTTTTACAT ATTTGTTGTT TTGGGGCTCT 78817 .......... .......... .......... .......... .......... .......... 1085 GTTTTTTTTT TTTTTGCTTC CATGAATCGA GCTTTTTCTA TTACTTGAAA CTTCAACTGA 78877 .......... .......... .......... .......... .......... .......... 1085 ACCTGCTTTA TTGATTTGTA AAAGTTTTTT TTCTTCTTTT GTTTGGGGTT TTGTTTAATT 78937 .......... .......... .......... .......... .......... .......... 1085 GAGCTCTGTT TTCCAGAGCT TGGTGAATTT GTTGTTTTTC TTCTTTGTTG GGGTTTGCTC 78997 .......... .......... .......... .......... .......... .......... 1085 AATTCAGCTC ATAAATCCCA TATTGGTGCT CTATTTGGAC CTGATTTTCA ATTATTTGTT 79057 .......... .......... .......... .......... .......... .......... 1085 GTTTTTTATT TGTTGGGGTT TGCTCAATTC AGCTCACAAT TCCCGTATTA GTACTCTATT 79117 .......... .......... .......... .......... .......... .......... 1085 TTGGATTTGA TTTTCGATTA TTGTTGGGTT TTGTTTGTTG ATAAATCCTA GTAATTTTCC 79177 .......... .......... .......... .......... .......... .......... 1085 ACCACTACCG TTTTTGCTGC TAGTGTTTTG AGCTTCTAAT GTCGACGTCT GCAGAGGGAA 79237 .......... .......... .......... .......... .......... .......... 1085 ATGGAGCTAT AATTGATCCT CAGAGGCAAC AACAACAGGC GCCTACTGGG GTTGGTACAA 79297 .......... .......... .......... .......... .......... .......... 1085 ATGGTGCTTT AACAGTGAAA AAACCGCCGG TAAAAGACCG GCATAGTAAG GTTGATGGTA 79357 .......... .......... .......... .......... .......... .......... 1085 GAGGAAGACG TATAAGGATG CCAATTGTAT GTGCGGCAAG AGTTTTTCAG CTTACTCGTG 79417 .......... .......... .......... .......... .......... .......... 1085 AATTGGGTCA TAAATCCGAT GGACAAACTA TTGAATGGCT GCTTCGTCAA GCTGAGCCTT 79477 .......... .......... .......... .......... .......... .......... 1085 CAATTATAGC TGCTACTGGT ACTGGTACTA TTCCTGCTAG TTTCTCGACT GTATCTGTAT 79537 .......... .......... .......... .......... .......... .......... 1085 CGGTACGGAA CTCAACTGCA TCTCTTGTTT CATCACTCTC CGCTCCACTT GATCAGAAAT 79597 .......... .......... .......... .......... .......... .......... 1085 CATCACAAAT GATTTCACCG GCGCCGTTTA TCCTCGGGAA ACGTCTCCGG TCAGATGACG 79657 .......... .......... .......... .......... .......... .......... 1085 AAAACATTGA AAATGGGAAT AAGGATGATG TAGCTGTGGC TGCCGGAGCT GCTACTGCTG 79717 .......... .......... .......... .......... .......... .......... 1085 TGGGTCCCAC AGCTGGGTTT TGGGCTGTTC CAGCTAGGCC TGATTTTGGT CAAATTTGGA 79777 .......... .......... .......... .......... .......... .......... 1085 GCTTTGCGGC GGCACCGCCA CCTGAAATGA TGGTGCCAAC CTCCGCGGCT GCAGCAGCTG 79837 .......... .......... .......... .......... .......... .......... 1085 CAGCCGCGGC AGCGTTAAGT TCGCAGAGTT CTAGATTCTT TCAGCAGCAG ATGGGTGAGG 79897 .......... .......... .......... .......... .......... .......... 1085 CTTCAGCTGC TAGAGTTGGG AATTACTTAC CAATGACTCA AGGGCATCTC AATTTGCTAG 79957 .......... .......... .......... .......... .......... .......... 1085 CTTCTCTATC AGGTCCTCCA CAGCCCTCTT CCGGGAGAAG AGACGACGAC GGACGTTGAA 80017 .......... .......... .......... .......... .......... .......... 1085 GATATGATTA TTGTTATTGT TATTGTTATC GTTATTGTTG TTAATATATC GTATAAATGT 80077 .......... .......... .......... .......... .......... .......... 1085 GTTTTAATGT TCTTGTTTGT GTTAGATGAG AAATTTGTTG CTAGGTTCTA GTGAGTGAGA 80137 .......... .......... .......... .......... .......... .......... 1085 AATGAACTAG GGGCTTGTTC AATTTCATGA ATTATTGCTA GGATTAGGTT TGTTTGCTAT 80197 .......... .......... .......... .......... .......... .......... 1085 ATCTCATTTG TCAAGAGTTT ACGTTCACCG AGTTTTGGTG TTGTAAGCTG TGGGACGATA 80257 .......... .......... .......... .......... .......... .......... 1085 ACACGAAACA CAAGCATCAG GGGAAGTTGT TGCTTGTGAT GATGAATTTG GTGGGGTTTG 80317 .......... .......... .......... .......... .......... .......... 1085 TTCTGTTGTT TGCAGACCTC ACAATAAGCT GCTTTGATCA CATTGTAACA AGATATAATA 80377 .......... .......... .......... .......... .......... .......... 1085 GGGGATCAGT GTGGACTATG AAAACCTGTA GTTCCACATG AATGTTTTGT AAGGAAACCA 80437 .......... .......... .......... .......... .......... .......... 1085 TGGCGGTTTC CGTTGAATTC AATTCTGTAA TTTGTTGAAA CTATATCAGT TGTGAGCTTA 80497 .......... .......... .......... .......... .......... .......... 1085 AACTTTCCTA CTCAAAAGAT TGCTATGGAC TTCAATTTAT TACTCAACTT ACATTGTGTT 80557 .......... .......... .......... .......... .......... .......... 1085 ATCTTGAATG GGTGCTATAA TTAGATGTTT TCGACATCTC AATGATTGAG TTGACACCAT 80617 .......... .......... .......... .......... .......... .......... 1085 ACTGTATAAA ATGAAATGGT TCATTTATTG CATTACTGGT TACACGTGTC GACTGATCAA 80677 .......... .......... .......... .......... .......... .......... 1085 CTAATGCATG GGACAGTGTG AAGTTGAAAC ATGAAATGCT GTGGAGGCGA ACGTATAAGG 80737 | || ||| | || | | | || || ||| | || .......... ......T-TG AAGCTCAACC AAGCAAAGCA GTGCAAGCAG .......... 1118 AGGATAGAAC TCTAAATTTC TATACTCAAG CTTTCTTAGA TTGGTTATGG ACCAGATAAT 80797 .......... .......... .......... .......... .......... .......... 1118 CTTGCTACAG CTTGATGTTT ATTCTATGTA TAAATGTGCG ATGTGTGCCA TAGATTCGAA 80857 .......... .......... .......... .......... .......... .......... 1118 ATGGAACAGC TCAAAGTTTC AACAGAAAGA GTATTTGATG ATTATTTACG TTAATGATCT 80917 .......... .......... .......... .......... .......... .......... 1118 TCATGCTATA TAAGTTCCTC AGTACCACTC AGAAGATTAA ACTGTAGTTG TTAAAAATGT 80977 .......... .......... .......... .......... .......... .......... 1118 TATAGTATAT CATACATTTA TGGATGACAT GATGCCGTAT TCTATCATGT GCTGCTTCAA 81037 .......... .......... .......... .......... .......... .......... 1118 CATGGAGGAG GAAGGAGTTA CACTGCAGCA TCTGGGAGGA TTCTGCTCTG CAGCATCTGA 81097 .......... .......... .......... .......... .......... .......... 1118 GATTAACGAC ACCTATCAGC TTTAATTTTG CATCAGATTA GGTAAGATGT GGTTATATTC 81157 .......... .......... .......... .......... .......... .......... 1118 GCTTTACTTG TGATTCTTTT TGAATCTTAT TAGTTTAGAA GATAAAGCAT ATAGATACCC 81217 || ||| | | | | .......... .......... .......... ...TTCTGAA G-TCATTC.. .......... 1132 TGTCAGTTAT CTGGCCTTAG AAAGCGAGAA AACCAATTTT GAGACATCTG ATTAGTCTTA 81277 .......... .......... .......... .......... .......... .......... 1132 TTTCAAGCTG ACAACGAGCT AGCCACACCT TTCTAGCTAT CCCGTTGGGA AAACAAGAAG 81337 .......... .......... .......... .......... .......... .......... 1132 GTTTATATAT GTCTTGAAGA TTTGCCCCAA TAGTTCTAAT TTAAATTGGT TCTCTAATAT 81397 .......... .......... .......... .......... .......... .......... 1132 AGAGCAAGTG TTTCTTGCTT TGTTTACCTG CATTTCTTTC TTGAGTTGCT GAAGTTTTAT 81457 .......... .......... .......... .......... .......... .......... 1132 TAGATTTAAA CTAAAGTCTC CTATGTTTTA TTTACGAGCC GGAGCAATTA TGTTCTCCAT 81517 .......... .......... .......... .......... .......... .......... 1132 GATCGATTTC AACTCCACGA GCTGGTTGAT TTTCTTTCTG CATTAATTTC ATCTCAAGTA 81577 .......... .......... .......... .......... .......... .......... 1132 ACCATCCAGA GTAGCAAATG GTGCAAGAAT ACAAACTTTG TTGGATCTGA AGTCTGAAAG 81637 .......... .......... .......... .......... .......... .......... 1132 CTTCGGTTGA TTTTCTATTT GCTTCCCACT TTACGAGACT ATTGATGTAC ACTGGAAGGT 81697 .......... .......... .......... .......... .......... .......... 1132 AATGTTATTG TTTTCAGCAT GCCTATTTAT CATATTAGTC GTCTTCTCTC GTGTCAAATC 81757 .......... .......... .......... .......... .......... .......... 1132 TTGCTGTATC TGTTTCTGTT CACATTCATC TGTTTCAATC AGAGGAATCT GAATAGAGAA 81817 .......... .......... .......... .......... .......... .......... 1132 TAAACATGCC ATTTCCGCAT TATTAGATAG ATAGTTTGTC TGATATTGGG TAGCATCCAC 81877 .......... .......... .......... .......... .......... .......... 1132 TCAATGAACC TGCTTGTTTA ATGATCTCAT TGGATTTTGG GATAAGTCGA GTTTAAGATG 81937 .......... .......... .......... .......... .......... .......... 1132 CGAACCATGG GTACCAAGTA CTTGGAAGCT TTCTATGTAC TCCATGCGTT ACTCTTGCCT 81997 .......... .......... .......... .......... .......... .......... 1132 CTATTGCTCA AATTCTTCAA AAATGTTGGT GGGTGCGTGT TAGACTCTTG CTAATATGGT 82057 .......... .......... .......... .......... .......... .......... 1132 GTTTCATAAC GACTATCACA TTTGGAATTT CAGTTTAGTT CAAATTCAGC GTTCTCTTTT 82117 .......... .......... .......... .......... .......... .......... 1132 CCAGGAGAAT AAGATTGTAT CTACAATCAG TATCGATCAT AGTTGAACCT TGGTCGCCTT 82177 .......... .......... .......... .......... .......... .......... 1132 GATTATGTCT ATTTGTCTCG TAAATAATTG CATATTTGAA AGAGGGATTT TCAGGGAACA 82237 .......... .......... .......... .......... .......... .......... 1132 ACATAAAGCA TGCTCAAGAA CTAACAACTT TTTGAAACTA GTTGTTTTTT GAGAAACAAT 82297 .......... .......... .......... .......... .......... .......... 1132 GGAGATTTTA CTTCTCATTT CTCTGTGTGA AGACTGCCTT TTTGTGTCTT ACCAACTTTC 82357 .......... .......... .......... .......... .......... .......... 1132 TGTATTATTT CAATCACTTG AATGCTTACT CGTTATTCAT TTCTCCTCAG AACGGAAGTC 82417 .......... .......... .......... .......... .......... .......... 1132 TTGGAGCAAT AGTAAACTTA TCTCCGTGTA AGTTCCAAGT CATTGTTTGA GCTGCAGCGG 82477 .......... .......... .......... .......... .......... .......... 1132 AACCAACCAC TGAATGCTTG CTTCAGGTGC GGCCCTTCCA CGTACCCTGC ATGCAACGGC 82537 .......... .......... .......... .......... .......... .......... 1132 TTCCTTTCTA ATTCAATTCT GTCTCAGTAC AAATAGTTCA TTGGTTTCTT ATAACATAAT 82597 .......... .......... .......... .......... .......... .......... 1132 TTTTCCTCAG CCACATAAGA GGAATTATAT ATATTCCTTT ATTAGGGATA ATTACGATCC 82657 .......... .......... .......... .......... .......... .......... 1132 CTAAACACTT CGATAAACTA GTTTATTTAT AAAATACAAA CAATGTATAA GTCGTGTATA 82717 .......... .......... .......... .......... .......... .......... 1132 CTTTACTAAA CATCATATAC TAATACACAA CATATATACT TAATAGTGTG TATGTTACAT 82777 .......... .......... .......... .......... .......... .......... 1132 TTATTTTTTA GTAAACTAGT CGGCTGAACG GTATATATCT ATAACTTTCT TAATTTTTTT 82837 .......... .......... .......... .......... .......... .......... 1132 AGAAATAAAC TTCGAACTTT ATAGATTCAC AATAGTGTAA ACTTTATAGG TTCACTTGAT 82897 .......... .......... .......... .......... .......... .......... 1132 TGATTGGTAT CTATATGTTT CTTCTACATG ACTTCAAGTT ACGTCTCCTT TGTTATAATT 82957 .......... .......... .......... .......... .......... .......... 1132 GTAATTATAT TTGATTCTAT AACATCAGTT TTGTGTTCTT TTTTCTTTTA AAAAATGCTT 83017 .......... .......... .......... .......... .......... .......... 1132 TTAAGTTAGC TAAAAGCTTG GCCAAACAGG CAATAG-ACA AGTGTTAAGA GCCTGTTTGG 83076 || || |||| | |||| ||| || || | || | |||| | ||||||| .....TTGGC --AAAG-ATA TACAAA-AGG CAGAAGTAGG AG-ATAAAGA ACTTGTTTGG 1182 CTCAGCTTAA AAACTGGTCA AACTGACTTA AAAACTGGTT TTTGACTTAT TTAGCTGTTT 83136 ||||||||| || ||||||| |||| ||||| ||| || || |||||||||| |||| ||||| TTCAGCTTAA AAGCTGGTCA AACTAACTTA AAAGCTAATT TTTGACTTAT TTAGTTGTTT 1242 GGCAATACTC AAAATAACTT ATTTTAAG-T TT-AAAAAAA CTTATTTTAG GTCAAAAGTT 83194 |||||| ||| |||||||||| |||||||| | || ||||||| ||||||||| | |||||||| GGCAATCCTC AAAATAACTT ATTTTAAGTT TTAAAAAAAA CTTATTTTAA GCCAAAAGTT 1302 AAAAGCTGGG TAGAGATGCT TTTTTTTTTT TTAGCTTATA AGCTGTTTTA AGTTGATCAC 83254 |||||||||| ||| | || |||||| | | |||||| | || ||||| |||||| ||| AAAAGCTGGG GTAAGA-GTG CTTCTTTTTT TCAACTTATA AACTATTTTA AGTTGACCAC 1361 ATTTTTAC 83262 |||||||| ATTTTTAC 1369 hqPGS_C04HBa0127E11.1+_SGN-U313325+ (83023 83262) ******************************************************************************** EST sequence 19 +strand 888 n (File: SGN-U341170+) 1 AAAGCTGGAG CTCCCCGCGG TGGCGGCCGC TCTAGACTAG TGGATCCCCC GGGCTGCAGG 61 AATTCGGCAC GAGGGAGCCA CACATCTTTT GTATTCCTCT CTTTACTCTT GTAAATTTGT 121 ACTTTTAAGT CAAATAAATT TTCAGCTGTT CTTGTTATCT GCTTTTGAAG ATCTACTTAA 181 GGTATTATTA TTATTATTTG AAAATTATTT TTATTCTCGT CTAGCCTAAA TGATAGGCTA 241 AACACTTACT GACAGATTAA TATCAACCTA AACTATTGAC AACATGGAAC TTGGACTGTT 301 CTGGTGTTTC TAAGGTCGAA ATAGTGTAGT TGGAGAGTGG GAAGATCTTG GCTTAGTATG 361 GAGTTCCTGT TAAGGCCTAT GTTAAGCCAT GTGTGAGGCG TTGTTTGAGC TATGTTGAAA 421 CCGTAAAAGA CCCTTTCATT CTCGGACTAT CTAACTCATA AACGAACCGA TAGTTACATC 481 TAAGCGATCC TATCGTATTT GATTCCAAAT GTTGAGATTT GTAAGGCTAT GCGGACTAGC 541 GCCAGCTTTG GAACTTGAGA ATGGATATTA CTTATTATTA TTATTATTAT TATTTATAAA 601 CAATTTGTGA TAGTAAAGAA ATATGTGAAT GATAGCAAAA TATAATTACT TATGGATGTA 661 AAATATAAAT TAATTTTGTT TCATTTTTTT AAAAAAAAAA AAAAAAAAAA ACTCGAGGGG 721 GGGGCCCGGT ACCCAATTTC GCCTATAATG AGTCGTATTA AATTCACTGG GCGGCGTTTT 781 ACAACGTCGT GACTGGGAAA ACCCTGGCGG TACCCAACTT AATCGCTTGG AGGACATCCC 841 CTTTGGCCAG TTGGGGTATA TGCGAGAAGG CCCCACCCAT CGCCCTTT Predicted gene structure (within gDNA segment 76912 to 86470): Exon 1 77980 77997 ( 18 n); cDNA 557 574 ( 18 n); score: 0.611 Intron 1 77998 80018 (2021 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 2 80019 80035 ( 17 n); cDNA 575 591 ( 17 n); score: 0.824 Intron 2 80036 83628 (3593 n); Pd: 0.096 (s: 0), Pa: 0.000 (s: 0.88) Exon 3 83629 83724 ( 96 n); cDNA 592 687 ( 96 n); score: 0.865 Intron 3 83725 85007 (1283 n); Pd: 0.000 (s: 0.86), Pa: 0.898 (s: 0) Exon 4 85008 85027 ( 20 n); cDNA 688 707 ( 20 n); score: 0.700 MATCH C04HBa0127E11.1+ SGN-U341170+ 0.865 151 0.170 C PGS_C04HBa0127E11.1+_SGN-U341170+ (77980 77997,80019 80035,83629 83724,85008 85027) Alignment (genomic DNA sequence = upper lines): GAGAATGCAC ATGCACAAGT ACCCTTCTAG ACTATGATCG AAGTTTCAGA GGCACACCTT 78039 ||||||| | || | GAGAATGGAT ATTACTTA.. .......... .......... .......... .......... 574 GATTAAACTA ATGTCTTATT ATCCTCTGAA CTTATTTTTT GCTTAATTAT ATACACCTTT 78099 .......... .......... .......... .......... .......... .......... 574 TGTCTTACGT GACACACTCC ATGGCTCCAC ACAATTGAGG CGTTGTGCAC AAAATTACAA 78159 .......... .......... .......... .......... .......... .......... 574 AAAAAAGAAA ATGTTAAAGG GGTAGTAAGA TCTTAGTTTA GTTAAGGCGT GTCTCATGAA 78219 .......... .......... .......... .......... .......... .......... 574 TTTCGGTCAT ACTCATGCCA ATAAAAATGA ATTGAAATAT GTATTATCAG TTAAGATCAA 78279 .......... .......... .......... .......... .......... .......... 574 GTTAAAAAAC ATACATTTTC AAAGTTGGAG TTTTTTCGTA CATCCAAAGA AAGTGACCGA 78339 .......... .......... .......... .......... .......... .......... 574 TAAAAATTAT GATATAGTGA TGAGTTACTC ATTCGTTCTT AATTAAGAGA GCGCAAATTC 78399 .......... .......... .......... .......... .......... .......... 574 AAATTTAATC GAACGTCGAC CGACCGACGA AAAGAAACCA CGGAAAGAGA AGTGTGAAAA 78459 .......... .......... .......... .......... .......... .......... 574 ATGGAAAGAG ATGGTGAAAA TTTTTGTGTG AATGTGAAGA TTGAAGAGAG AGAGAGAGAG 78519 .......... .......... .......... .......... .......... .......... 574 GGGAGTGAGC GCGTGAAAGA GGGTAGTGGG TACTGTACTG GATTGCTAGC AGGGATGAGC 78579 .......... .......... .......... .......... .......... .......... 574 TGTGAATATA TGTGTAAGAG AGTAGTACTA ATGTCCCCAC CACCCATGTG ACCTTCTTCC 78639 .......... .......... .......... .......... .......... .......... 574 TGTCACCACC AGTTCCTGCT TCTCAATCAT TAGTCCTATT CCCCCCTCCC CCTCCATTGT 78699 .......... .......... .......... .......... .......... .......... 574 TGTATCTCTA CTATTTTTAC ATACTATTTG TTTTTTGGTT CTACTCTCAT TCTCTTGCTA 78759 .......... .......... .......... .......... .......... .......... 574 TACTTTACAA GAGTGGTGGA TCTTGTATTT TTTTACATAT TTGTTGTTTT GGGGCTCTGT 78819 .......... .......... .......... .......... .......... .......... 574 TTTTTTTTTT TTTGCTTCCA TGAATCGAGC TTTTTCTATT ACTTGAAACT TCAACTGAAC 78879 .......... .......... .......... .......... .......... .......... 574 CTGCTTTATT GATTTGTAAA AGTTTTTTTT CTTCTTTTGT TTGGGGTTTT GTTTAATTGA 78939 .......... .......... .......... .......... .......... .......... 574 GCTCTGTTTT CCAGAGCTTG GTGAATTTGT TGTTTTTCTT CTTTGTTGGG GTTTGCTCAA 78999 .......... .......... .......... .......... .......... .......... 574 TTCAGCTCAT AAATCCCATA TTGGTGCTCT ATTTGGACCT GATTTTCAAT TATTTGTTGT 79059 .......... .......... .......... .......... .......... .......... 574 TTTTTATTTG TTGGGGTTTG CTCAATTCAG CTCACAATTC CCGTATTAGT ACTCTATTTT 79119 .......... .......... .......... .......... .......... .......... 574 GGATTTGATT TTCGATTATT GTTGGGTTTT GTTTGTTGAT AAATCCTAGT AATTTTCCAC 79179 .......... .......... .......... .......... .......... .......... 574 CACTACCGTT TTTGCTGCTA GTGTTTTGAG CTTCTAATGT CGACGTCTGC AGAGGGAAAT 79239 .......... .......... .......... .......... .......... .......... 574 GGAGCTATAA TTGATCCTCA GAGGCAACAA CAACAGGCGC CTACTGGGGT TGGTACAAAT 79299 .......... .......... .......... .......... .......... .......... 574 GGTGCTTTAA CAGTGAAAAA ACCGCCGGTA AAAGACCGGC ATAGTAAGGT TGATGGTAGA 79359 .......... .......... .......... .......... .......... .......... 574 GGAAGACGTA TAAGGATGCC AATTGTATGT GCGGCAAGAG TTTTTCAGCT TACTCGTGAA 79419 .......... .......... .......... .......... .......... .......... 574 TTGGGTCATA AATCCGATGG ACAAACTATT GAATGGCTGC TTCGTCAAGC TGAGCCTTCA 79479 .......... .......... .......... .......... .......... .......... 574 ATTATAGCTG CTACTGGTAC TGGTACTATT CCTGCTAGTT TCTCGACTGT ATCTGTATCG 79539 .......... .......... .......... .......... .......... .......... 574 GTACGGAACT CAACTGCATC TCTTGTTTCA TCACTCTCCG CTCCACTTGA TCAGAAATCA 79599 .......... .......... .......... .......... .......... .......... 574 TCACAAATGA TTTCACCGGC GCCGTTTATC CTCGGGAAAC GTCTCCGGTC AGATGACGAA 79659 .......... .......... .......... .......... .......... .......... 574 AACATTGAAA ATGGGAATAA GGATGATGTA GCTGTGGCTG CCGGAGCTGC TACTGCTGTG 79719 .......... .......... .......... .......... .......... .......... 574 GGTCCCACAG CTGGGTTTTG GGCTGTTCCA GCTAGGCCTG ATTTTGGTCA AATTTGGAGC 79779 .......... .......... .......... .......... .......... .......... 574 TTTGCGGCGG CACCGCCACC TGAAATGATG GTGCCAACCT CCGCGGCTGC AGCAGCTGCA 79839 .......... .......... .......... .......... .......... .......... 574 GCCGCGGCAG CGTTAAGTTC GCAGAGTTCT AGATTCTTTC AGCAGCAGAT GGGTGAGGCT 79899 .......... .......... .......... .......... .......... .......... 574 TCAGCTGCTA GAGTTGGGAA TTACTTACCA ATGACTCAAG GGCATCTCAA TTTGCTAGCT 79959 .......... .......... .......... .......... .......... .......... 574 TCTCTATCAG GTCCTCCACA GCCCTCTTCC GGGAGAAGAG ACGACGACGG ACGTTGAAGA 80019 .......... .......... .......... .......... .......... .........T 575 TATGATTATT GTTATTGTTA TTGTTATCGT TATTGTTGTT AATATATCGT ATAAATGTGT 80079 ||| |||||| ||||| TATTATTATT ATTATT.... .......... .......... .......... .......... 591 TTTAATGTTC TTGTTTGTGT TAGATGAGAA ATTTGTTGCT AGGTTCTAGT GAGTGAGAAA 80139 .......... .......... .......... .......... .......... .......... 591 TGAACTAGGG GCTTGTTCAA TTTCATGAAT TATTGCTAGG ATTAGGTTTG TTTGCTATAT 80199 .......... .......... .......... .......... .......... .......... 591 CTCATTTGTC AAGAGTTTAC GTTCACCGAG TTTTGGTGTT GTAAGCTGTG GGACGATAAC 80259 .......... .......... .......... .......... .......... .......... 591 ACGAAACACA AGCATCAGGG GAAGTTGTTG CTTGTGATGA TGAATTTGGT GGGGTTTGTT 80319 .......... .......... .......... .......... .......... .......... 591 CTGTTGTTTG CAGACCTCAC AATAAGCTGC TTTGATCACA TTGTAACAAG ATATAATAGG 80379 .......... .......... .......... .......... .......... .......... 591 GGATCAGTGT GGACTATGAA AACCTGTAGT TCCACATGAA TGTTTTGTAA GGAAACCATG 80439 .......... .......... .......... .......... .......... .......... 591 GCGGTTTCCG TTGAATTCAA TTCTGTAATT TGTTGAAACT ATATCAGTTG TGAGCTTAAA 80499 .......... .......... .......... .......... .......... .......... 591 CTTTCCTACT CAAAAGATTG CTATGGACTT CAATTTATTA CTCAACTTAC ATTGTGTTAT 80559 .......... .......... .......... .......... .......... .......... 591 CTTGAATGGG TGCTATAATT AGATGTTTTC GACATCTCAA TGATTGAGTT GACACCATAC 80619 .......... .......... .......... .......... .......... .......... 591 TGTATAAAAT GAAATGGTTC ATTTATTGCA TTACTGGTTA CACGTGTCGA CTGATCAACT 80679 .......... .......... .......... .......... .......... .......... 591 AATGCATGGG ACAGTGTGAA GTTGAAACAT GAAATGCTGT GGAGGCGAAC GTATAAGGAG 80739 .......... .......... .......... .......... .......... .......... 591 GATAGAACTC TAAATTTCTA TACTCAAGCT TTCTTAGATT GGTTATGGAC CAGATAATCT 80799 .......... .......... .......... .......... .......... .......... 591 TGCTACAGCT TGATGTTTAT TCTATGTATA AATGTGCGAT GTGTGCCATA GATTCGAAAT 80859 .......... .......... .......... .......... .......... .......... 591 GGAACAGCTC AAAGTTTCAA CAGAAAGAGT ATTTGATGAT TATTTACGTT AATGATCTTC 80919 .......... .......... .......... .......... .......... .......... 591 ATGCTATATA AGTTCCTCAG TACCACTCAG AAGATTAAAC TGTAGTTGTT AAAAATGTTA 80979 .......... .......... .......... .......... .......... .......... 591 TAGTATATCA TACATTTATG GATGACATGA TGCCGTATTC TATCATGTGC TGCTTCAACA 81039 .......... .......... .......... .......... .......... .......... 591 TGGAGGAGGA AGGAGTTACA CTGCAGCATC TGGGAGGATT CTGCTCTGCA GCATCTGAGA 81099 .......... .......... .......... .......... .......... .......... 591 TTAACGACAC CTATCAGCTT TAATTTTGCA TCAGATTAGG TAAGATGTGG TTATATTCGC 81159 .......... .......... .......... .......... .......... .......... 591 TTTACTTGTG ATTCTTTTTG AATCTTATTA GTTTAGAAGA TAAAGCATAT AGATACCCTG 81219 .......... .......... .......... .......... .......... .......... 591 TCAGTTATCT GGCCTTAGAA AGCGAGAAAA CCAATTTTGA GACATCTGAT TAGTCTTATT 81279 .......... .......... .......... .......... .......... .......... 591 TCAAGCTGAC AACGAGCTAG CCACACCTTT CTAGCTATCC CGTTGGGAAA ACAAGAAGGT 81339 .......... .......... .......... .......... .......... .......... 591 TTATATATGT CTTGAAGATT TGCCCCAATA GTTCTAATTT AAATTGGTTC TCTAATATAG 81399 .......... .......... .......... .......... .......... .......... 591 AGCAAGTGTT TCTTGCTTTG TTTACCTGCA TTTCTTTCTT GAGTTGCTGA AGTTTTATTA 81459 .......... .......... .......... .......... .......... .......... 591 GATTTAAACT AAAGTCTCCT ATGTTTTATT TACGAGCCGG AGCAATTATG TTCTCCATGA 81519 .......... .......... .......... .......... .......... .......... 591 TCGATTTCAA CTCCACGAGC TGGTTGATTT TCTTTCTGCA TTAATTTCAT CTCAAGTAAC 81579 .......... .......... .......... .......... .......... .......... 591 CATCCAGAGT AGCAAATGGT GCAAGAATAC AAACTTTGTT GGATCTGAAG TCTGAAAGCT 81639 .......... .......... .......... .......... .......... .......... 591 TCGGTTGATT TTCTATTTGC TTCCCACTTT ACGAGACTAT TGATGTACAC TGGAAGGTAA 81699 .......... .......... .......... .......... .......... .......... 591 TGTTATTGTT TTCAGCATGC CTATTTATCA TATTAGTCGT CTTCTCTCGT GTCAAATCTT 81759 .......... .......... .......... .......... .......... .......... 591 GCTGTATCTG TTTCTGTTCA CATTCATCTG TTTCAATCAG AGGAATCTGA ATAGAGAATA 81819 .......... .......... .......... .......... .......... .......... 591 AACATGCCAT TTCCGCATTA TTAGATAGAT AGTTTGTCTG ATATTGGGTA GCATCCACTC 81879 .......... .......... .......... .......... .......... .......... 591 AATGAACCTG CTTGTTTAAT GATCTCATTG GATTTTGGGA TAAGTCGAGT TTAAGATGCG 81939 .......... .......... .......... .......... .......... .......... 591 AACCATGGGT ACCAAGTACT TGGAAGCTTT CTATGTACTC CATGCGTTAC TCTTGCCTCT 81999 .......... .......... .......... .......... .......... .......... 591 ATTGCTCAAA TTCTTCAAAA ATGTTGGTGG GTGCGTGTTA GACTCTTGCT AATATGGTGT 82059 .......... .......... .......... .......... .......... .......... 591 TTCATAACGA CTATCACATT TGGAATTTCA GTTTAGTTCA AATTCAGCGT TCTCTTTTCC 82119 .......... .......... .......... .......... .......... .......... 591 AGGAGAATAA GATTGTATCT ACAATCAGTA TCGATCATAG TTGAACCTTG GTCGCCTTGA 82179 .......... .......... .......... .......... .......... .......... 591 TTATGTCTAT TTGTCTCGTA AATAATTGCA TATTTGAAAG AGGGATTTTC AGGGAACAAC 82239 .......... .......... .......... .......... .......... .......... 591 ATAAAGCATG CTCAAGAACT AACAACTTTT TGAAACTAGT TGTTTTTTGA GAAACAATGG 82299 .......... .......... .......... .......... .......... .......... 591 AGATTTTACT TCTCATTTCT CTGTGTGAAG ACTGCCTTTT TGTGTCTTAC CAACTTTCTG 82359 .......... .......... .......... .......... .......... .......... 591 TATTATTTCA ATCACTTGAA TGCTTACTCG TTATTCATTT CTCCTCAGAA CGGAAGTCTT 82419 .......... .......... .......... .......... .......... .......... 591 GGAGCAATAG TAAACTTATC TCCGTGTAAG TTCCAAGTCA TTGTTTGAGC TGCAGCGGAA 82479 .......... .......... .......... .......... .......... .......... 591 CCAACCACTG AATGCTTGCT TCAGGTGCGG CCCTTCCACG TACCCTGCAT GCAACGGCTT 82539 .......... .......... .......... .......... .......... .......... 591 CCTTTCTAAT TCAATTCTGT CTCAGTACAA ATAGTTCATT GGTTTCTTAT AACATAATTT 82599 .......... .......... .......... .......... .......... .......... 591 TTCCTCAGCC ACATAAGAGG AATTATATAT ATTCCTTTAT TAGGGATAAT TACGATCCCT 82659 .......... .......... .......... .......... .......... .......... 591 AAACACTTCG ATAAACTAGT TTATTTATAA AATACAAACA ATGTATAAGT CGTGTATACT 82719 .......... .......... .......... .......... .......... .......... 591 TTACTAAACA TCATATACTA ATACACAACA TATATACTTA ATAGTGTGTA TGTTACATTT 82779 .......... .......... .......... .......... .......... .......... 591 ATTTTTTAGT AAACTAGTCG GCTGAACGGT ATATATCTAT AACTTTCTTA ATTTTTTTAG 82839 .......... .......... .......... .......... .......... .......... 591 AAATAAACTT CGAACTTTAT AGATTCACAA TAGTGTAAAC TTTATAGGTT CACTTGATTG 82899 .......... .......... .......... .......... .......... .......... 591 ATTGGTATCT ATATGTTTCT TCTACATGAC TTCAAGTTAC GTCTCCTTTG TTATAATTGT 82959 .......... .......... .......... .......... .......... .......... 591 AATTATATTT GATTCTATAA CATCAGTTTT GTGTTCTTTT TTCTTTTAAA AAATGCTTTT 83019 .......... .......... .......... .......... .......... .......... 591 AAGTTAGCTA AAAGCTTGGC CAAACAGGCA ATAGACAAGT GTTAAGAGCC TGTTTGGCTC 83079 .......... .......... .......... .......... .......... .......... 591 AGCTTAAAAA CTGGTCAAAC TGACTTAAAA ACTGGTTTTT GACTTATTTA GCTGTTTGGC 83139 .......... .......... .......... .......... .......... .......... 591 AATACTCAAA ATAACTTATT TTAAGTTTAA AAAAACTTAT TTTAGGTCAA AAGTTAAAAG 83199 .......... .......... .......... .......... .......... .......... 591 CTGGGTAGAG ATGCTTTTTT TTTTTTTAGC TTATAAGCTG TTTTAAGTTG ATCACATTTT 83259 .......... .......... .......... .......... .......... .......... 591 TACGTTTTTG GCCTTAATAT TTTTATACAA TCTCCAAATT ACCTACATAA CTCTAATATC 83319 .......... .......... .......... .......... .......... .......... 591 TCTTTCTTTC ATTTTTCCTT TTTCACGTGT GGATGATAGA TAATTACTAT TACTAATGAA 83379 .......... .......... .......... .......... .......... .......... 591 TAAAAATAAA AAAAATCTTA TCTTTCAAGT GATCTATTCA AATTATATAT TATTAAAATG 83439 .......... .......... .......... .......... .......... .......... 591 TAAAATAAGT TGCACATCTA ACTTAAATAA AAATTTATAT TCTTCTTATA AATAATTTGT 83499 .......... .......... .......... .......... .......... .......... 591 GATAATAAAG AAATATGTGA ATGATAGACA ATTATTATTA CCTATGGATG AAACTAAAAT 83559 .......... .......... .......... .......... .......... .......... 591 AAAATCTTAA ATCGTTCTTT GATCTTTTCA AATTATATAT CTTTAAAATC TATAATAAGT 83619 .......... .......... .......... .......... .......... .......... 591 TTATATTCCT CTTATAAATA ATTTGTGATG AGAAAGAAAT ATGTGAATGA TAGCAAAATA 83679 ||||||| | ||||||||| |||||||| |||||||||| |||||||||| .........A TTTATAAACA ATTTGTGATA GTAAAGAAAT ATGTGAATGA TAGCAAAATA 642 TAATTATTTA TGGCTGTAAA ATATAAATTA ATTAACTTTT ATTATGTTAA CAACTTTTAA 83739 |||||| ||| ||| |||||| |||||||||| ||| ||| ||| | TAATTACTTA TGGATGTAAA ATATAAATTA ATTTTGTTTC ATTTT..... .......... 687 GAGTATTTCA GACATTTTGA TTTAAAAAGC AGTTTATCAG CATTTATTTG CCAAACACAT 83799 .......... .......... .......... .......... .......... .......... 687 CAACAATTTT TTTTTTAACT TCAGCACTTT TATCCAAACG CATAACTGCT TATTTTAAAA 83859 .......... .......... .......... .......... .......... .......... 687 ATAAGTTTCA GCAATTTCAA AAGTATTTTT TTAAAGCTGT TTTTATCAAG CCCATCCAAA 83919 .......... .......... .......... .......... .......... .......... 687 CGGGCACTTA TTATGGCCGT CTATACGATG TAGGCGACCA CATTACGTGA ATATCATTAT 83979 .......... .......... .......... .......... .......... .......... 687 TCACAATAAT ATCGTGTTCA ATGTAATTCA ATAAGATTTA GAAATGATTT TATGTACATA 84039 .......... .......... .......... .......... .......... .......... 687 AATCTTACTC TATACAATTT CCGCTCTATC GAATGCCAAT AGTATGGTCT AAATATCTAA 84099 .......... .......... .......... .......... .......... .......... 687 ATAATCGTCG CTTTGGTAAT TCACAATAAA TAGAAATAAT TTAGTAAATT ATTTTATATT 84159 .......... .......... .......... .......... .......... .......... 687 TATTTATTTT GACTGATTTT AAAATTAACC CTAAAATTTC ATAAGCAATC TTAAGCGTAC 84219 .......... .......... .......... .......... .......... .......... 687 CTCCTAAGAT TTTAGAACGT AGAAAAACAA CAATTTTCAA AAGCTAATCC CAAATTCCAA 84279 .......... .......... .......... .......... .......... .......... 687 AAATTTTCCG ATCGGAGATT TTTTTTTCCG ATCAGAAACA GAAAATAAAA ATGGCAGTGA 84339 .......... .......... .......... .......... .......... .......... 687 ATCCTCAATT ATTTCCTAAT GGAATGCCAA TTCCTTTCCT CAATGAATTG TTCGTCCTAT 84399 .......... .......... .......... .......... .......... .......... 687 CTAGACATGG TGTTGAGTTT GAGGTTGACA AAATCCCTGG GTGAGTTCAT CTTATTTAGC 84459 .......... .......... .......... .......... .......... .......... 687 GAATTCAGAA TTTTCATTTA GGGATTCGTA AAAAAAAATG CTTAATTTTT GAACTTGAAA 84519 .......... .......... .......... .......... .......... .......... 687 CCTCGATATG AAATTTGAGC CCCTCAATAT TCAAAATTTA TTGTAATATG TAAGAATTAT 84579 .......... .......... .......... .......... .......... .......... 687 CTTATCTATA TGGTGTAATT TGTGAATCCT CTCTATTCGT GTATATGAAG AAAAAAAAAA 84639 .......... .......... .......... .......... .......... .......... 687 CTCTGAAAGT ATTTATGTAT AATTTTATGC AAATATTATG AGAAGTGGAG GTGACAGCAG 84699 .......... .......... .......... .......... .......... .......... 687 GGGCGGAGCT AATTAGGTTC CTTTTGATAG AAAATTATAC TGTTTATATA TGGTTAAAAT 84759 .......... .......... .......... .......... .......... .......... 687 TATTTTTTGT GCCCATATCT CTATGTATAT ATATATATTA GATGTTGAAC CCCTCAATGA 84819 .......... .......... .......... .......... .......... .......... 687 AAATATTGGC TTCGATGAGG TTAGTTGGAG GATGAGGACG ATAAAATCGA TGTGAAGTGT 84879 .......... .......... .......... .......... .......... .......... 687 CAAATATGGT TAAATGTATT TGCTTTACTT TTTTGAGTTC CTTGTTTTTC AAACACATGA 84939 .......... .......... .......... .......... .......... .......... 687 TTCTTGCATT GCCTTCATTG TTTTTTATTA GTTCATGAAG CTGTGTTAAT GAGACTGTTT 84999 .......... .......... .......... .......... .......... .......... 687 GTTATCAGTG TAGGAAAAAC AAGAACAA 85027 | || ||||| || || || ........TT TAAAAAAAAA AAAAAAAA 707 hqPGS_C04HBa0127E11.1+_SGN-U341170+ (83629 83724) ******************************************************************************** EST sequence 15 +strand 996 n (File: SGN-U338058+) 1 GATTAAAGCT GGGAGCTCCA CCGCGGTGGC AGGCCGCTCT AGAACTAGTG GATCCCCCGG 61 GCTGCAGGAA TTCGGCACGA GGCTAAGATT TTAGAACGTA GAAAACCACA ATTTTCAAAA 121 GCTAATCCCA AATTCCAAAA ATTTTCCGAT CGGAGATTTT TTTTTCCGAT CAGAAACAGA 181 AAATAAAAAT GGCAGTGAAT CCTCAATTAT TTCCTAATGG AATGCCAATT CCTTTCCTCA 241 ATGAATTGTT CGTCCTATCT AGACATGGTG TTGAGTTTGA GGTTGACAAA ATCCCTGGTG 301 TAGGAAAAAC AAGAACAAGA GGTACAATCT ACTTGTCGAA TATTCGGATG GTCTTTGTTG 361 CAAAGATGCC TGTGGATTTC ATTGCTTTTG ATATGCCTTT GCTTTTTGTT TCTGATGAAA 421 TATTTACGCA ACCAGTATTC CACTGCAACA ACATCTCTGG ATTTGTAGAT CCGGTTGTTC 481 CAGATAATGA AAACAGTGCC TTGTACTCCA CACATACATT CAAGATTTTG TTCAGGATGG 541 TGGTTGTGGG ACTTTCGTGC CATTATTTTT CAACTTAATC GCCTCTGTGA GACGAGCTCA 601 GCAACAGTCT GGGGTACAGC CACGGGCAGA CCCTCTCCAA GCTGCACAAA CTCCAGTTGA 661 TGAGATGATT AGACATGCTT ATGTCGATCC CAATGATCCA ACGAAAATCT TCTTGCAGCA 721 GCCTACTCCA GAGTCGCACT TAGGCGTCGN TCATACCAAT CACAACCTGC TTAAACTCAA 781 TATACTTTCT GGCAATGCAC CTGAATTGTG ATTGTTCATT TCCTGAGTAC TTTTCTCTTG 841 GGGATGGCTT GTTCTANAAA TATATAACAA CTANAGAAAT GGGCTGCAAA AAAAAAAAAA 901 AAAAACTCAG GGGGCCGGNA CCCATCGCCT AAGGGATCGA TACATCACTG GCGCGTTCCA 961 ACTCGGATGG AAACCCTGCG TACCACTAAT GCTGAG Predicted gene structure (within gDNA segment 82803 to 89509): Exon 1 84223 84439 ( 217 n); cDNA 83 298 ( 216 n); score: 0.991 Intron 1 84440 85007 ( 568 n); Pd: 0.989 (s: 1.00), Pa: 0.898 (s: 1.00) Exon 2 85008 85110 ( 103 n); cDNA 299 401 ( 103 n); score: 1.000 Intron 2 85111 85853 ( 743 n); Pd: 0.983 (s: 1.00), Pa: 0.971 (s: 1.00) Exon 3 85854 85925 ( 72 n); cDNA 402 473 ( 72 n); score: 1.000 Intron 3 85926 86272 ( 347 n); Pd: 0.996 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 4 86273 86478 ( 206 n); cDNA 474 678 ( 205 n); score: 0.995 Intron 4 86479 86591 ( 113 n); Pd: 0.977 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 86592 86818 ( 227 n); cDNA 679 889 ( 211 n); score: 0.890 Intron 5 86819 87136 ( 318 n); Pd: 0.000 (s: 0.76), Pa: 0.798 (s: 0) Exon 6 87137 87152 ( 16 n); cDNA 890 905 ( 16 n); score: 0.750 MATCH C04HBa0127E11.1+ SGN-U338058+ 0.966 841 0.844 C PGS_C04HBa0127E11.1+_SGN-U338058+ (84223 84439,85008 85110,85854 85925,86273 86478,86592 86818,87137 87152) Alignment (genomic DNA sequence = upper lines): CTAAGATTTT AGAACGTAGA AAAACAACAA TTTTCAAAAG CTAATCCCAA ATTCCAAAAA 84282 |||||||||| ||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| CTAAGATTTT AGAACGTAG- AAAACCACAA TTTTCAAAAG CTAATCCCAA ATTCCAAAAA 141 TTTTCCGATC GGAGATTTTT TTTTCCGATC AGAAACAGAA AATAAAAATG GCAGTGAATC 84342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCGATC GGAGATTTTT TTTTCCGATC AGAAACAGAA AATAAAAATG GCAGTGAATC 201 CTCAATTATT TCCTAATGGA ATGCCAATTC CTTTCCTCAA TGAATTGTTC GTCCTATCTA 84402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAATTATT TCCTAATGGA ATGCCAATTC CTTTCCTCAA TGAATTGTTC GTCCTATCTA 261 GACATGGTGT TGAGTTTGAG GTTGACAAAA TCCCTGGGTG AGTTCATCTT ATTTAGCGAA 84462 |||||||||| |||||||||| |||||||||| ||||||| GACATGGTGT TGAGTTTGAG GTTGACAAAA TCCCTGG... .......... .......... 298 TTCAGAATTT TCATTTAGGG ATTCGTAAAA AAAAATGCTT AATTTTTGAA CTTGAAACCT 84522 .......... .......... .......... .......... .......... .......... 298 CGATATGAAA TTTGAGCCCC TCAATATTCA AAATTTATTG TAATATGTAA GAATTATCTT 84582 .......... .......... .......... .......... .......... .......... 298 ATCTATATGG TGTAATTTGT GAATCCTCTC TATTCGTGTA TATGAAGAAA AAAAAAACTC 84642 .......... .......... .......... .......... .......... .......... 298 TGAAAGTATT TATGTATAAT TTTATGCAAA TATTATGAGA AGTGGAGGTG ACAGCAGGGG 84702 .......... .......... .......... .......... .......... .......... 298 CGGAGCTAAT TAGGTTCCTT TTGATAGAAA ATTATACTGT TTATATATGG TTAAAATTAT 84762 .......... .......... .......... .......... .......... .......... 298 TTTTTGTGCC CATATCTCTA TGTATATATA TATATTAGAT GTTGAACCCC TCAATGAAAA 84822 .......... .......... .......... .......... .......... .......... 298 TATTGGCTTC GATGAGGTTA GTTGGAGGAT GAGGACGATA AAATCGATGT GAAGTGTCAA 84882 .......... .......... .......... .......... .......... .......... 298 ATATGGTTAA ATGTATTTGC TTTACTTTTT TGAGTTCCTT GTTTTTCAAA CACATGATTC 84942 .......... .......... .......... .......... .......... .......... 298 TTGCATTGCC TTCATTGTTT TTTATTAGTT CATGAAGCTG TGTTAATGAG ACTGTTTGTT 85002 .......... .......... .......... .......... .......... .......... 298 ATCAGTGTAG GAAAAACAAG AACAAGAGGT ACAATCTACT TGTCGAATAT TCGGATGGTC 85062 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....TGTAG GAAAAACAAG AACAAGAGGT ACAATCTACT TGTCGAATAT TCGGATGGTC 353 TTTGTTGCAA AGATGCCTGT GGATTTCATT GCTTTTGATA TGCCTTTGGT ATGTTATACT 85122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTTGTTGCAA AGATGCCTGT GGATTTCATT GCTTTTGATA TGCCTTTG.. .......... 401 TCTATGTCTT TTTACCGTCC TCCGATTTTG CAAACACCAC ATGCTAACCA ACTCTATTCA 85182 .......... .......... .......... .......... .......... .......... 401 CTCATGACTG GTATAGTTTT TCTGTGGATC AGAGAAGAAA ATCGCGAAAA CTCTCTTTTG 85242 .......... .......... .......... .......... .......... .......... 401 TTACTCTTAC TATTATATTA ACAAGTTACT ATGGCGCTCC TTCAGTATCT GCTGTAACTA 85302 .......... .......... .......... .......... .......... .......... 401 GACCAACATA TGCATAATGT GCAATTCAGA ATGGCGATTC CAAGTATAAC GATTAGCGAT 85362 .......... .......... .......... .......... .......... .......... 401 ATTTCTTTTG TTGCTTCTTT TTGAGGCTGA ACAAAACTTT GTGTATGATA TGCTTCTGAA 85422 .......... .......... .......... .......... .......... .......... 401 TCCTGTAGTT TTGTTCTCTC TTTGAAATAC ATTTTAGAAA GTCGTATTTT ACTATGTGCA 85482 .......... .......... .......... .......... .......... .......... 401 ATTCAGAATG GCGCGTAGTA GAGCAGATAT ATCACTTTGG TCAAATACGA TCCTTCTCCT 85542 .......... .......... .......... .......... .......... .......... 401 ATGAAACTGT ACTGTTTGTT TCTAAAGCTT TGACATGTTA ATTGAATGGT ATTATGACAT 85602 .......... .......... .......... .......... .......... .......... 401 GATTTATATC TGATTTGTAT ATTAAGCACA ACATTGCTAG ATACAACATC TGCTAGGAAG 85662 .......... .......... .......... .......... .......... .......... 401 CATGTTATGG CATATATTGT TCGGATATTT GTTAAGATGC ATGACATGAA TTCGTGTTCA 85722 .......... .......... .......... .......... .......... .......... 401 TCTGTTCTAT GTTTTTGTTC AGAGAAATAA TCTGGTAAGT TGGTGACTTT GCTGAGCAAG 85782 .......... .......... .......... .......... .......... .......... 401 AAGTTACAAA ACTGAGAAAT GTAAGCTACA TTTGCTTTGA CAAAGTTTAT TTACCTTTTT 85842 .......... .......... .......... .......... .......... .......... 401 TCATTCTGCA GCTTTTTGTT TCTGATGAAA TATTTACGCA ACCAGTATTC CACTGCAACA 85902 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .CTTTTTGTT TCTGATGAAA TATTTACGCA ACCAGTATTC CACTGCAACA 450 ACATCTCTGG ATTTGTAGAT CCGGTAAGCT GAATTACTAT TTTCGAATAT ACTCAATGTT 85962 |||||||||| |||||||||| ||| ACATCTCTGG ATTTGTAGAT CCG....... .......... .......... .......... 473 GTCTAAGGTG CACTTTAAGC GCACTTAAGG GTGAAGCGAG GTGCAAAGTA TGTTGAGCTT 86022 .......... .......... .......... .......... .......... .......... 473 AGCTGGCGCG TTAGTGCCGT CATCAAGGCT CTAGCACCTT GTCAATGACT CTAAATGCTA 86082 .......... .......... .......... .......... .......... .......... 473 AATTCTCTCC TTATATTTGT TATTATAATC ATTAGTCTAG GACTACACAT ACATATTTGT 86142 .......... .......... .......... .......... .......... .......... 473 GATTTTCTCC ACCACATTTT ATCTATGCTT ATAGCCCCAA CGAACCTTAG AGACTTTTTG 86202 .......... .......... .......... .......... .......... .......... 473 CTCTTTTTGC TTTCGAAAAC ACTGGATTAT GTGCGTGCAA CATTAGATAA CCGATTATGG 86262 .......... .......... .......... .......... .......... .......... 473 CTATGTTCAG GTTGTTCCAG ATAATGAAAA CAGTGCCTTG TACTCCACAC ATACATTCAA 86322 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GTTGTTCCAG ATAATGAAAA CAGTGCCTTG TACTCCACAC ATACATTCAA 523 GATTTTGTTC AAGGATGGTG GTTGTGGGAC TTTCGTGCCA TTATTTTTCA ACTTAATCGC 86382 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTTGTTC -AGGATGGTG GTTGTGGGAC TTTCGTGCCA TTATTTTTCA ACTTAATCGC 582 CTCTGTGAGA CGAGCTCAGC AACAGTCTGG GGTACAGCCA CGGGCAGACC CTCTCCAAGC 86442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTGTGAGA CGAGCTCAGC AACAGTCTGG GGTACAGCCA CGGGCAGACC CTCTCCAAGC 642 TGCACAAACT CCAGTTGATG AGATGATTAG ACATGCGTAT GTCAACGTTG CTTTCTCCTT 86502 |||||||||| |||||||||| |||||||||| |||||| TGCACAAACT CCAGTTGATG AGATGATTAG ACATGC.... .......... .......... 678 TTTACAACGA CATTAGTTAA CGATCCTTTC CCCCCCTCAA TATGCTAACT GGTTTTACTG 86562 .......... .......... .......... .......... .......... .......... 678 AATTCTTATG GTGTTTGTTG ATTTTGCAGT TATGTCGATC CCAATGATCC AACGAAAATC 86622 | |||||||||| |||||||||| |||||||||| .......... .......... .........T TATGTCGATC CCAATGATCC AACGAAAATC 709 TTCTTGCAGC AGCCTACTCC AGAGTCGCAA CTTAGGCGTC GTTCATACCA ATCACAACCT 86682 |||||||||| |||||||||| |||||||| | |||||||||| | |||||||| |||||||||| TTCTTGCAGC AGCCTACTCC AGAGTCGC-A CTTAGGCGTC GNTCATACCA ATCACAACCT 768 GCTTAAAACT CAATATACTT CTTGTTCAAT GCAACCTGAA TTGTGAATTG TTCATTTCCT 86742 |||| ||||| |||||||||| || |||| || ||||||| ||||| |||| |||||||||| GCTT-AAACT CAATATACTT TCTG-GCAAT GC-ACCTGAA TTGTG-ATTG TTCATTTCCT 824 GATGTACTTT TTCTCTTGGT GATTGCTTTG ATTCTATTAA AATATATAAA CAAACTAGAA 86802 || |||| || ||||||||| ||| || ||| ||||| | ||||||| || | ||||| | GA-GTAC-TT TTCTCTTGGG GATGGC-TTG -TTCTA--NA AATATAT-AA C-AACTA-NA 875 GAAAATGGGC TTGCATGTGT ATATGCAGTT GGTATACATA TTTTCTTCAA GTGTACAGAG 86862 | |||||||| |||| G-AAATGGGC -TGCAA.... .......... .......... .......... .......... 889 GTTATAATAT ATTTAATGGT ACGTTTATCT CGATATATGT GATGTAGACG TCTACTCTAA 86922 .......... .......... .......... .......... .......... .......... 889 TGCAAGCATT AGTGATTATT TCCAGTTTTC TACAGATTGA ACACGTGACT TATATCACGT 86982 .......... .......... .......... .......... .......... .......... 889 GGAGACAATT TGACTGTCAC TCCAAGACTC CTCTTGTTAA TATATAGTAC AGATGTACTC 87042 .......... .......... .......... .......... .......... .......... 889 AAGTGACCAA AAAATGCTTT AAATACAGGA GGTAAAATAA TGCAGCATGT TTCTGAATAA 87102 .......... .......... .......... .......... .......... .......... 889 ACAATATGTT ACAAAATCAC CTTTTATTCA ACAGAACAAA AACTTAAAAA 87152 || ||| || ||||| .......... .......... .......... ....AAAAAA AAAAAAAAAA 905 hqPGS_C04HBa0127E11.1+_SGN-U338058+ (84223 84439,85008 85110,85854 85925,86273 86478,86592 86818) ******************************************************************************** EST sequence 10 +strand 1023 n (File: SGN-U324667+) 1 CAAAAATTTT CCGATCGGAG ATTTTCTATT CCGATCAGAA AACAGAAAAT AAAAATGGCA 61 GTGAATCCTC AATTATTTCC TAATGGAATG CCAATTCCTT TCCTCAATGA ATTGTTCGTC 121 CTATCTAGAC ATGGTGTTGA GTTTGTGGTC GACAAAATCC CTGGTGTAGG AAAAACAAGA 181 ACAAGAGGTA CAATCTACTT GTCGAATATT CGGATGGTCT TTGTTGCAAA GATGCCTGTG 241 GATTTCATTG CTTTTGATAT GCCTTTGGTA TGTTATACTT CTATGTCTTT TTACCGTCCT 301 CCGATTTTGC AAACACCACA TGCTAACCAA CTCTATTCAC TCATGACTGG TATAGTTTTT 361 CTGTGGATCA GAGAAGAAAA TCGCGAAAAC TCTCTTTTGT TACTCTTACT ATTATATTAA 421 CAAGTTACTA TGGCGCTCCT TCAGTATCTG CTGTAACTAG ACCAACATAT GCATAATGTG 481 CAATTCAGAA TGGCGATTCC AAGTATAACG ATTAGCGATA TTTCTTTTGT TGCTTCTTTT 541 TGAGGCTGAA CAAAACTTTG TGTATGATAT GCTTCTGAAT CCTGTAGTTT TGTTCTCTCT 601 TTGAAATACA TTTTAGAAAG TCGTATTTTA CTATGTGCAA TTCAGAATGG CGCGTAGTAG 661 AGCAGATATA TCACTTTGGT CAAATACGAT CCTTCTCCTA TGAAACTGTA CTGTTTGTTT 721 CTAAAGCTTT GACATGTTAA TTGAATGGTA TTATGACATG ATTTATATCT GATTTGTATA 781 TTAAGCACAA CATTGCTAGA TACAACATCT GCTAGGAAGC ATGTTATGGC ATATATTGTT 841 CGGATATTTG TTAAGATGCA TGACATGAAT TCGTGTTCAT CTGTTCTATG TTTTTGTTCA 901 GAGAAATAAT CTGGTAAGTT GGTGACTTTT GCTGAACAAG AAGTTACAAA ACTGAGAAAT 961 GTAAGCTACA TTTGCTTTGA CAAAGTTTAT TTACCTTTTT TTCTTCTGCA GCTTTTTGTT 1021 TCT Predicted gene structure (within gDNA segment 83677 to 86475): Exon 1 84277 84439 ( 163 n); cDNA 1 164 ( 164 n); score: 0.960 Intron 1 84440 85007 ( 568 n); Pd: 0.989 (s: 0.96), Pa: 0.898 (s: 1.00) Exon 2 85008 85865 ( 858 n); cDNA 165 1023 ( 859 n); score: 0.994 MATCH C04HBa0127E11.1+ SGN-U324667+ 0.988 1021 0.998 C PGS_C04HBa0127E11.1+_SGN-U324667+ (84277 84439,85008 85865) Alignment (genomic DNA sequence = upper lines): CAAAAATTTT CCGATCGGAG ATTTTTTTTT CCGATCAGAA -ACAGAAAAT AAAAATGGCA 84335 |||||||||| |||||||||| ||||| | || |||||||||| ||||||||| |||||||||| CAAAAATTTT CCGATCGGAG ATTTTCTATT CCGATCAGAA AACAGAAAAT AAAAATGGCA 60 GTGAATCCTC AATTATTTCC TAATGGAATG CCAATTCCTT TCCTCAATGA ATTGTTCGTC 84395 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAATCCTC AATTATTTCC TAATGGAATG CCAATTCCTT TCCTCAATGA ATTGTTCGTC 120 CTATCTAGAC ATGGTGTTGA GTTTGAGGTT GACAAAATCC CTGGGTGAGT TCATCTTATT 84455 |||||||||| |||||||||| ||||| ||| |||||||||| |||| CTATCTAGAC ATGGTGTTGA GTTTGTGGTC GACAAAATCC CTGG...... .......... 164 TAGCGAATTC AGAATTTTCA TTTAGGGATT CGTAAAAAAA AATGCTTAAT TTTTGAACTT 84515 .......... .......... .......... .......... .......... .......... 164 GAAACCTCGA TATGAAATTT GAGCCCCTCA ATATTCAAAA TTTATTGTAA TATGTAAGAA 84575 .......... .......... .......... .......... .......... .......... 164 TTATCTTATC TATATGGTGT AATTTGTGAA TCCTCTCTAT TCGTGTATAT GAAGAAAAAA 84635 .......... .......... .......... .......... .......... .......... 164 AAAACTCTGA AAGTATTTAT GTATAATTTT ATGCAAATAT TATGAGAAGT GGAGGTGACA 84695 .......... .......... .......... .......... .......... .......... 164 GCAGGGGCGG AGCTAATTAG GTTCCTTTTG ATAGAAAATT ATACTGTTTA TATATGGTTA 84755 .......... .......... .......... .......... .......... .......... 164 AAATTATTTT TTGTGCCCAT ATCTCTATGT ATATATATAT ATTAGATGTT GAACCCCTCA 84815 .......... .......... .......... .......... .......... .......... 164 ATGAAAATAT TGGCTTCGAT GAGGTTAGTT GGAGGATGAG GACGATAAAA TCGATGTGAA 84875 .......... .......... .......... .......... .......... .......... 164 GTGTCAAATA TGGTTAAATG TATTTGCTTT ACTTTTTTGA GTTCCTTGTT TTTCAAACAC 84935 .......... .......... .......... .......... .......... .......... 164 ATGATTCTTG CATTGCCTTC ATTGTTTTTT ATTAGTTCAT GAAGCTGTGT TAATGAGACT 84995 .......... .......... .......... .......... .......... .......... 164 GTTTGTTATC AGTGTAGGAA AAACAAGAAC AAGAGGTACA ATCTACTTGT CGAATATTCG 85055 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..TGTAGGAA AAACAAGAAC AAGAGGTACA ATCTACTTGT CGAATATTCG 212 GATGGTCTTT GTTGCAAAGA TGCCTGTGGA TTTCATTGCT TTTGATATGC CTTTGGTATG 85115 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGTCTTT GTTGCAAAGA TGCCTGTGGA TTTCATTGCT TTTGATATGC CTTTGGTATG 272 TTATACTTCT ATGTCTTTTT ACCGTCCTCC GATTTTGCAA ACACCACATG CTAACCAACT 85175 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATACTTCT ATGTCTTTTT ACCGTCCTCC GATTTTGCAA ACACCACATG CTAACCAACT 332 CTATTCACTC ATGACTGGTA TAGTTTTTCT GTGGATCAGA GAAGAAAATC GCGAAAACTC 85235 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTCACTC ATGACTGGTA TAGTTTTTCT GTGGATCAGA GAAGAAAATC GCGAAAACTC 392 TCTTTTGTTA CTCTTACTAT TATATTAACA AGTTACTATG GCGCTCCTTC AGTATCTGCT 85295 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTTGTTA CTCTTACTAT TATATTAACA AGTTACTATG GCGCTCCTTC AGTATCTGCT 452 GTAACTAGAC CAACATATGC ATAATGTGCA ATTCAGAATG GCGATTCCAA GTATAACGAT 85355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAACTAGAC CAACATATGC ATAATGTGCA ATTCAGAATG GCGATTCCAA GTATAACGAT 512 TAGCGATATT TCTTTTGTTG CTTCTTTTTG AGGCTGAACA AAACTTTGTG TATGATATGC 85415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCGATATT TCTTTTGTTG CTTCTTTTTG AGGCTGAACA AAACTTTGTG TATGATATGC 572 TTCTGAATCC TGTAGTTTTG TTCTCTCTTT GAAATACATT TTAGAAAGTC GTATTTTACT 85475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGAATCC TGTAGTTTTG TTCTCTCTTT GAAATACATT TTAGAAAGTC GTATTTTACT 632 ATGTGCAATT CAGAATGGCG CGTAGTAGAG CAGATATATC ACTTTGGTCA AATACGATCC 85535 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTGCAATT CAGAATGGCG CGTAGTAGAG CAGATATATC ACTTTGGTCA AATACGATCC 692 TTCTCCTATG AAACTGTACT GTTTGTTTCT AAAGCTTTGA CATGTTAATT GAATGGTATT 85595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCCTATG AAACTGTACT GTTTGTTTCT AAAGCTTTGA CATGTTAATT GAATGGTATT 752 ATGACATGAT TTATATCTGA TTTGTATATT AAGCACAACA TTGCTAGATA CAACATCTGC 85655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGACATGAT TTATATCTGA TTTGTATATT AAGCACAACA TTGCTAGATA CAACATCTGC 812 TAGGAAGCAT GTTATGGCAT ATATTGTTCG GATATTTGTT AAGATGCATG ACATGAATTC 85715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGAAGCAT GTTATGGCAT ATATTGTTCG GATATTTGTT AAGATGCATG ACATGAATTC 872 GTGTTCATCT GTTCTATGTT TTTGTTCAGA GAAATAATCT GGTAAGTTGG TGAC-TTTGC 85774 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| GTGTTCATCT GTTCTATGTT TTTGTTCAGA GAAATAATCT GGTAAGTTGG TGACTTTTGC 932 TGAGCAAGAA GTTACAAAAC TGAGAAATGT AAGCTACATT TGCTTTGACA AAGTTTATTT 85834 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACAAGAA GTTACAAAAC TGAGAAATGT AAGCTACATT TGCTTTGACA AAGTTTATTT 992 ACCTTTTTTC ATTCTGCAGC TTTTTGTTTC T 85865 ||||||||| ||||||||| |||||||||| | ACCTTTTTTT CTTCTGCAGC TTTTTGTTTC T 1023 hqPGS_C04HBa0127E11.1+_SGN-U324667+ (84277 84439,85008 85865) ******************************************************************************** EST sequence 30 +strand 1724 n (File: SGN-U315915+) 1 GACAACAAAA AAATTAGAAG AAAACCCATT GCAGCACTAA TTCAAGAATA CTCAGAGAGA 61 GAAGAGGAAG AGTTGGTAAC AATGGCTGCT GTAAATGGTG TAGGACTTTC ATGGCCATCA 121 AAATTGACCA AAAATCAAAC ACCCAAATGG GGTTTTTCTC CATCTCACCG TCGATGCAAC 181 CCATCTTCTT CTTCTTCTTC TGCAACCATT AGAATGACAG CCTCAGTTGA TGAAAAGAAG 241 AAAACGTTCA CACTTGAGAA GTCTGAAGAA GCTTTCAGCA AAGCCAAGGA GTTGATGCCA 301 GGAGGTGTAA ATTCCCCTGT CCGTGCTTTC AAGTCAGTTG GCGGACAACC TATCATTATT 361 GACTCCGTGA AGGGCTCTCG TATGCGGGAC ATAGATGGTA ACGAGTACAT TGACTATGTC 421 GGATCATGGG GACCAGCTAT AATTGGTCAT GCGGATGATG AGGTGCTAGC AGCATTGGCT 481 GAAACAATGA AGAAAGGAAC GAGTTTCGGT GCTCCATGTC TCCTTGAAAA TACACTGGCA 541 GAGATGGTTA TTTCAGCTGT TCCAAGCATA GAAATGGTTC GATTTGTCAA CTCTGGTACA 601 GAAGCATGTA TGGGAGTACT ACGGCTGGCT CGTGCTTTCA CTTGCCGTCC TAAGATCATC 661 AAATTTGAGG GTTGTTACCA TGGTCATGCT GATCCATTTC TTGTTAAAGC GGGCAGTGGC 721 GTTGCCACCC TCGGTCTTCC TGACTCTCCG GGAGTTCCAA AGGCAGCTAC TATCGATACT 781 CTGACCGCAC CTTACAATGA CATTTCTGCT GTTGAGAGCC TCTTTGAGGA GCACAAAGGA 841 GAAATAGCCG CTGTAATTCT CGAGCCTGTA GTCGGAAATG CTGGCTTCAT CCCACCTAAG 901 CTAGAATTTC TTGCTGCCAT TCGCAAGATC ACCAAAGAGA ATGATGCACT TCTTATTTTC 961 GACGAAGTCA TGACTGGATT TAGATTGGCA TATGGCGGTG CTCAAGAGTA TTTTGGAATA 1021 ACTCCAGATT TGACAACACT CGGGAAGATT ATTGGCGGTG GCTTGCCAGT AGGTGCTTAC 1081 GGAGGAAGAC GGGATATAAT GGAGATGGTA GCACCTGCAG GACCAATGTA TCAAGCTGGC 1141 ACCCTAAGTG GAAACCCATT GGCCATGACT GCTGGAATTC ACACGCTTAA GCGGTTACAA 1201 GGACAGGGAA CATACGAACA CTTGGACAAG ATCACCGCGG AACTTACACA AGGAATCTTG 1261 GATGCTGGAA AGAAGACCGG TCATGCAATG TGTGGTGGCT CCATAAGGGG GATGTTTGGC 1321 TTCTTCTTCG CGGATGGTCC CATCTATAAC TTTTCGGATG CAAAGAAGAG TGATACAGAA 1381 AAATTTGGCA GATTCTATAG AGGGATGCTG GAGGAAGGTG TTTACTTTGC ACCATCACAG 1441 TTTGAGGCTG GATTTACTAG CTTAGCACAC ACTCCAGAGG ATATTCAAAG GACTGTAGCT 1501 GCAGCTGAAA AAGTTTTGAA GCAAATTTAA CCACTATATT TCTTTTTGTA TGCTAGATGG 1561 AGAGATTTTC CTTTTTAAGT TTTTGTTCTG TTGAATAAAA GGTGATTTTG TAACATATTG 1621 TTTATTCAGA AACATGCTGC ATTATTTTAC CTCCTGTATT TAAAGCATTT TTTGGTCACT 1681 TGAGTACATC TGTACTATAT ATTAACAAGA GGAGTCTTGG AGCG Predicted gene structure (within gDNA segment 91515 to 86372): Exon 1 90860 90574 ( 287 n); cDNA 2 288 ( 287 n); score: 0.997 Intron 1 90573 89208 (1366 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 89207 89034 ( 174 n); cDNA 289 462 ( 174 n); score: 1.000 Intron 2 89033 88262 ( 772 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 88261 87002 (1260 n); cDNA 463 1722 (1260 n); score: 0.998 MATCH C04HBa0127E11.1- SGN-U315915+ 0.998 1721 0.998 C PGS_C04HBa0127E11.1-_SGN-U315915+ (90860 90574,89207 89034,88261 87002) Alignment (genomic DNA sequence = upper lines): ACAAAAAAAA AATTAGAAGA AAACCCATTG CAGCACTAAT TCAAGAATAC TCAGAGAGAG 90801 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAAAAA AATTAGAAGA AAACCCATTG CAGCACTAAT TCAAGAATAC TCAGAGAGAG 61 AAGAGGAAGA GTTGGTAACA ATGGCTGCTG TAAATGGTGT AGGACTTTCA TGGCCATCAA 90741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGAAGA GTTGGTAACA ATGGCTGCTG TAAATGGTGT AGGACTTTCA TGGCCATCAA 121 AATTGACCAA AAATCAAACA CCCAAATGGG GTTTTTCTCC ATCTCACCGT CGATGCAACC 90681 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGACCAA AAATCAAACA CCCAAATGGG GTTTTTCTCC ATCTCACCGT CGATGCAACC 181 CATCTTCTTC TTCTTCTTCT GCAACCATTA GAATGACAGC CTCAGTTGAT GAAAAGAAGA 90621 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTTCTTC TTCTTCTTCT GCAACCATTA GAATGACAGC CTCAGTTGAT GAAAAGAAGA 241 AAACGTTCAC ACTTGAGAAG TCTGAAGAAG CTTTCAGCAA AGCCAAGGTA ATCAAAATTC 90561 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AAACGTTCAC ACTTGAGAAG TCTGAAGAAG CTTTCAGCAA AGCCAAG... .......... 288 AGTTTTTTTT TTTTTTTTTG GCTTCATGTT CATACAATTC AATTTGGTGA TGTTATTCAG 90501 .......... .......... .......... .......... .......... .......... 288 TACTCATTAG ACAAAAGTAA GGTTCAAAAA TCCATAGACT CAAAATCCTG GATCCACCTC 90441 .......... .......... .......... .......... .......... .......... 288 ATCTTCTAGA TAAGGTGGTG ATAATATTCA AGATTATGGA TATTGTTCAG TGTTTGTTCT 90381 .......... .......... .......... .......... .......... .......... 288 TTGATTTGAA GTGTATTGGT CAAGATTTGA TTTTTCATGC TAATATTGCT GGTAAAATTG 90321 .......... .......... .......... .......... .......... .......... 288 GAGGGGGTTG TCATGTGACC AGGAGGTTAT GGGTTCGAGC TGTAGGTACA GCCTTTTGCA 90261 .......... .......... .......... .......... .......... .......... 288 GAAATGCAGG TTAAGGCTGC ATACTATAGA CCCTTGTGGT CCGGCCCTTC CACCCCAAGC 90201 .......... .......... .......... .......... .......... .......... 288 ATAGTGGGAG CTTAAAATTG CTAGCTTTAA GATATTTGGG TTGGATGAAG AGAAGAAAAA 90141 .......... .......... .......... .......... .......... .......... 288 GGATATGTTG ATTTGATAAA GTTGGTGTTA GGTGTACAAA CAAAGTCTTA GGCTCTGAGC 90081 .......... .......... .......... .......... .......... .......... 288 TGAAAAGAAA GTAAAAGACT TTGTAATGAT ATTGTTAATG GTGTGAGGCT TTTTTTGGAG 90021 .......... .......... .......... .......... .......... .......... 288 AAAACCGTGT GGATTTGGTT TTAGTCCAAA GTGGACAATA CTGCACCATG TTTAAAGTAT 89961 .......... .......... .......... .......... .......... .......... 288 CTTTGGGTTG TTTTAGCCTA ACAGTTGGTT CACCTGCCAT TTTGGCATCT GCTGATGAAT 89901 .......... .......... .......... .......... .......... .......... 288 TGATGTATAA CCAGTGCTCT CTGATCTAAC ATACAGTCTA GTTGTCCTCC CATATAAGTT 89841 .......... .......... .......... .......... .......... .......... 288 AGTATAGCTT AACTGTGATC TATTTGTGAC TTTATGAGAA CCTTGAGTAT GTTTTAGATG 89781 .......... .......... .......... .......... .......... .......... 288 TTGGTTGTGC TCAAAAGGCG TAATTTTTAT CACTGTTTAA ATTTCATGAA TATCCGAGGT 89721 .......... .......... .......... .......... .......... .......... 288 GGTTTGACTA CAAAGAGGAG ATATATTGAT GGATCTGATA ATGTAGCACA ATTTCTGCAG 89661 .......... .......... .......... .......... .......... .......... 288 CAAAATATGT TTGTTTGCTT TAGTTGGTTC TGTTTCCCTT TATTTATTCT TTTGTTCTTG 89601 .......... .......... .......... .......... .......... .......... 288 TGTATCTTCT GATGTGACCT ACTGAGATTG GAACCTATGA GGGGGAAATG CTAAACCCTA 89541 .......... .......... .......... .......... .......... .......... 288 TCACATTTTC TAGATGGGGT AAAAGGTTAG AAAAATGGCG CTTGAGGAAG AACAAATTGA 89481 .......... .......... .......... .......... .......... .......... 288 ACAACATTTC GTCCTTAGTT GAAAAGGGAC TAACACTTTG AACCTGAAAA TACAGTTCAA 89421 .......... .......... .......... .......... .......... .......... 288 CTAATTTTTC AGTTAATTGG TGTAAGCCTT CAATCTACAA AGGTACACTT GATTCATGTT 89361 .......... .......... .......... .......... .......... .......... 288 ATTCTTCTTG TGTTGTGCTC AAAATCTCTA TACATTAGTA TCTTGCAGCA GAATACTCCC 89301 .......... .......... .......... .......... .......... .......... 288 GAAAGCAAAG AGGAGGAAAG ATTCAATCAA TTTTATTAAT CCTTAGTCCC TACAAGTTCT 89241 .......... .......... .......... .......... .......... .......... 288 TTCATTGATT TCATCGTGTT TTACTGTTGG TAGGAGTTGA TGCCAGGAGG TGTAAATTCC 89181 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GAGTTGA TGCCAGGAGG TGTAAATTCC 315 CCTGTCCGTG CTTTCAAGTC AGTTGGCGGA CAACCTATCA TTATTGACTC CGTGAAGGGC 89121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGTCCGTG CTTTCAAGTC AGTTGGCGGA CAACCTATCA TTATTGACTC CGTGAAGGGC 375 TCTCGTATGC GGGACATAGA TGGTAACGAG TACATTGACT ATGTCGGATC ATGGGGACCA 89061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCGTATGC GGGACATAGA TGGTAACGAG TACATTGACT ATGTCGGATC ATGGGGACCA 435 GCTATAATTG GTCATGCGGA TGATGAGGTT TAGTTCTCTA CTCTCAACTC TATGTTAAGC 89001 |||||||||| |||||||||| ||||||| GCTATAATTG GTCATGCGGA TGATGAG... .......... .......... .......... 462 TTGAAATTTC ATTAGTCACT GTGCATTTAT TTGGCCTGGC TTGTTAGTAA TAAGTTATTA 88941 .......... .......... .......... .......... .......... .......... 462 CTGCATCTAC TTGCTTTGTA TTTGGTAACA TGTTTTAGAA ACTCCGTCTT AAAGCTGCTT 88881 .......... .......... .......... .......... .......... .......... 462 CTTGTCTTTG CTCTCATTAC AGGTTCGGTA AGTTTTGTAT TTTGGAAGAA CCATTGAATT 88821 .......... .......... .......... .......... .......... .......... 462 ACTTTGGCCT TAAATGACTA TTTATGACTA CGAAGAACAT ATGGTTTAAG TTTTTAATCT 88761 .......... .......... .......... .......... .......... .......... 462 TAACCTGAGA CCTCATGGTG CTTGACCCAT TTATTGACCG CTAGGCCACA CCCTTGGGTG 88701 .......... .......... .......... .......... .......... .......... 462 CTTCTTTTGT TCTTTTTCTT AAATAGAAAT TGGTATTTGA CGTCCATCTT GTAGACGGTT 88641 .......... .......... .......... .......... .......... .......... 462 CCTGTGATAG TGTATAAATC AGTATTATTA AAAGTTGACT GATGAGCATT TCTTAACTGG 88581 .......... .......... .......... .......... .......... .......... 462 GAACGATTTG GTTGGAGGTT GAGTGAACTG TGTAGGTTAT TGGGTGGATG AAGTGAAAAC 88521 .......... .......... .......... .......... .......... .......... 462 TCAAGTAGAA CATGTCTACA AGTGGATTCT CTTGAGTTCA GCTTTAAGAA CTATTGCGCA 88461 .......... .......... .......... .......... .......... .......... 462 AGACACCTCA AAATCTTCTA TGCCCCTCTG TCTTATTACA CTGTACTATG GAAACATAGT 88401 .......... .......... .......... .......... .......... .......... 462 TGATTAAAAG TGTCAGTACT GTAGGTGGGG AGAGTCCTTT TTGGCATGAA AGGTTTAGGT 88341 .......... .......... .......... .......... .......... .......... 462 ACGAACAAGA GAGGGAAAGT TTTTAATGCT TTTTCCATTG TTTTTGAGGC AATAATCTTG 88281 .......... .......... .......... .......... .......... .......... 462 GTATGACCTT TCCCTGCAGG TGCTAGCAGC ATTGGCTGAA ACAATGAAGA AAGGAACGAG 88221 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G TGCTAGCAGC ATTGGCTGAA ACAATGAAGA AAGGAACGAG 503 TTTCGGTGCT CCATGTCTCC TTGAAAATAC ACTGGCAGAG ATGGTTATTT CAGCTGTTCC 88161 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCGGTGCT CCATGTCTCC TTGAAAATAC ACTGGCAGAG ATGGTTATTT CAGCTGTTCC 563 AAGCATAGAA ATGGTTCGAT TTGTCAACTC TGGTACAGAA GCATGTATGG GAGTACTACG 88101 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCATAGAA ATGGTTCGAT TTGTCAACTC TGGTACAGAA GCATGTATGG GAGTACTACG 623 GCTGGCTCGT GCTTTCACTT GCCGTCCTAA GATCATCAAA TTCGAGGGTT GTTACCATGG 88041 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| GCTGGCTCGT GCTTTCACTT GCCGTCCTAA GATCATCAAA TTTGAGGGTT GTTACCATGG 683 TCATGCTGAT CCATTTCTTG TTAAAGCAGG CAGTGGCGTT GCCACCCTCG GTCTTCCTGA 87981 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| TCATGCTGAT CCATTTCTTG TTAAAGCGGG CAGTGGCGTT GCCACCCTCG GTCTTCCTGA 743 CTCTCCGGGA GTTCCAAAGG CAGCTACTAT CGATACTCTG ACCGCACCTT ACAATGACAT 87921 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTCCGGGA GTTCCAAAGG CAGCTACTAT CGATACTCTG ACCGCACCTT ACAATGACAT 803 TTCTGCTGTT GAGAGCCTCT TTGAGGAGCA CAAAGGAGAA ATAGCCGCTG TAATTCTCGA 87861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGCTGTT GAGAGCCTCT TTGAGGAGCA CAAAGGAGAA ATAGCCGCTG TAATTCTCGA 863 GCCTGTAGTC GGAAATGCTG GCTTCATCCC ACCTAAGCTA GAATTTCTTG CTGCCATTCG 87801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTGTAGTC GGAAATGCTG GCTTCATCCC ACCTAAGCTA GAATTTCTTG CTGCCATTCG 923 CAAGATCACC AAAGAGAATG ATGCACTTCT TATTTTCGAC GAAGTCATGA CTGGATTTAG 87741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGATCACC AAAGAGAATG ATGCACTTCT TATTTTCGAC GAAGTCATGA CTGGATTTAG 983 ATTGGCATAT GGCGGTGCTC AAGAGTATTT TGGAATAACT CCAGATTTGA CAACACTCGG 87681 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGCATAT GGCGGTGCTC AAGAGTATTT TGGAATAACT CCAGATTTGA CAACACTCGG 1043 GAAGATTATT GGCGGTGGCT TGCCAGTAGG TGCTTACGGA GGAAGACGGG ATATAATGGA 87621 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGATTATT GGCGGTGGCT TGCCAGTAGG TGCTTACGGA GGAAGACGGG ATATAATGGA 1103 GATGGTAGCA CCTGCAGGAC CAATGTATCA AGCTGGCACC CTAAGTGGAA ACCCATTGGC 87561 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGTAGCA CCTGCAGGAC CAATGTATCA AGCTGGCACC CTAAGTGGAA ACCCATTGGC 1163 CATGACTGCT GGAATTCACA CGCTTAAGCG GTTACAAGGA CAGGGAACAT ACGAACACTT 87501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGACTGCT GGAATTCACA CGCTTAAGCG GTTACAAGGA CAGGGAACAT ACGAACACTT 1223 GGACAAGATC ACCGCGGAAC TTACACAAGG AATCTTGGAT GCTGGAAAGA AGACCGGTCA 87441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACAAGATC ACCGCGGAAC TTACACAAGG AATCTTGGAT GCTGGAAAGA AGACCGGTCA 1283 TGCAATGTGT GGTGGCTCCA TAAGGGGGAT GTTTGGCTTC TTCTTCGCGG ATGGTCCCAT 87381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAATGTGT GGTGGCTCCA TAAGGGGGAT GTTTGGCTTC TTCTTCGCGG ATGGTCCCAT 1343 CTATAACTTT TCGGATGCAA AGAAGAGTGA TACAGAAAAA TTTGGCAGAT TCTATAGAGG 87321 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATAACTTT TCGGATGCAA AGAAGAGTGA TACAGAAAAA TTTGGCAGAT TCTATAGAGG 1403 GATGCTGGAG GAAGGTGTTT ACTTTGCACC ATCACAGTTT GAGGCTGGAT TTACTAGCTT 87261 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCTGGAG GAAGGTGTTT ACTTTGCACC ATCACAGTTT GAGGCTGGAT TTACTAGCTT 1463 AGCACACACT CCAGAGGATA TTCAAAGGAC TGTAGCTGCA GCTGAAAAAG TTTTGAAGCA 87201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCACACACT CCAGAGGATA TTCAAAGGAC TGTAGCTGCA GCTGAAAAAG TTTTGAAGCA 1523 AATTTAACCA CTATATTTCT TTTTGTATGC TAGATGGAGA GATTTTCCTT TTTAAGTTTT 87141 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTAACCA CTATATTTCT TTTTGTATGC TAGATGGAGA GATTTTCCTT TTTAAGTTTT 1583 TGTTCTGTTG AATAAAAGGT GATTTTGTAA CATATTGTTT ATTCAGAAAC ATGCTGCATT 87081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCTGTTG AATAAAAGGT GATTTTGTAA CATATTGTTT ATTCAGAAAC ATGCTGCATT 1643 ATTTTACCTC CTGTATTTAA AGCATTTTTT GGTCACTTGA GTACATCTGT ACTATATATT 87021 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTACCTC CTGTATTTAA AGCATTTTTT GGTCACTTGA GTACATCTGT ACTATATATT 1703 AACAAGAGGA GTCTTGGAG 87002 |||||||||| ||||||||| AACAAGAGGA GTCTTGGAG 1722 hqPGS_C04HBa0127E11.1-_SGN-U315915+ (90860 90574,89207 89034,88261 87002) Total number of EST alignments reported: 44 ________________________________________________________________________________ Predicted gene locations (14) in segment 1 to 95845: PGL 1 (- strand): 9140 3019 AGS-1 (9140 8057,7956 7620,5558 4953,3990 3842,3563 3434,3349 3019) SCR (e 0.996 d 0.991 a 0.894,e 1.000 d 0.989 a 0.989,e 1.000 d 0.994 a 0.000,e 1.000 d 0.986 a 0.997,e 1.000 d 0.930 a 0.814,e 1.000) Exon 1 9140 8057 (1084 n); score: 0.996 Intron 1 8056 7957 ( 100 n); Pd: 0.991 Pa: 0.894 Exon 2 7956 7620 ( 337 n); score: 1.000 Intron 2 7619 5559 (2061 n); Pd: 0.989 Pa: 0.989 Exon 3 5558 4953 ( 606 n); score: 1.000 Intron 3 4952 3991 ( 962 n); Pd: 0.994 Pa: 0.000 Exon 4 3990 3842 ( 149 n); score: 1.000 Intron 4 3841 3564 ( 278 n); Pd: 0.986 Pa: 0.997 Exon 5 3563 3434 ( 130 n); score: 1.000 Intron 5 3433 3350 ( 84 n); Pd: 0.930 Pa: 0.814 Exon 6 3349 3019 ( 331 n); score: 1.000 PGS (8112 8057,7956 7620,5558 4953,3990 3842,3563 3434,3349 3019) SGN-U319645+ PGS (9140 8057,7956 7942) SGN-U326880+ 3-phase translation of AGS-1 (-strand): . . . . . . 9140 ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGT T S N F G S - F - L F V N E F L L C C C Q V I L E V D F D C L - M S S F F V V V K - F W K L I L I V C K - V P S L L L . . . . . . 9080 TTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATT F V A V - I - G G V L S A N E F F N F I L L L Y E Y K E E C F Q L M N F L I L F F C C C M N I R R S A F S - - I F - F Y . . . . . . 9020 TTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAG F C C K K K K S N F G K W M F T - G E K F A V K K K R V T L E N G C L L K V R R F L L - K K K E - L W K M D V Y L R - E . . . . . . 8960 AGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTG S F K L M N - F C L L K N E R E E I N L V L S L - T D F V C - K M K E K K - I W E F - A Y E L I L F V E K - K R R N K F . . . . . . 8900 GAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGG E I E F - L R R R F S A Y E T D F - - R K L N F S - G E D F Q L M K R I F S E G G N - I L V K E K I F S L - N G F L V K . . . . . . 8840 AGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTC R G I Y L S N T L I A L K R A E L S Y L E E F I C Q I H - - P - K E Q N F R I S E R N L F V K Y I D S L K K S R T F V S . . . . . . 8780 TAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAA - R W K - S Y L N P N Y D D F N L K K Q N G G N N L T L I Q T M M I S I - R N K L T V E I I L P - S K L - - F Q F K E T . . . . . . 8720 ATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACA I L C S I F D L L I L R K H P L - L F T F C V L F L I Y S F - G S I L S S C L Q N S V F Y F - F T H F K E A S S L V V Y . . . . . . 8660 GCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATT A K I L - L M L - L K D V A L D E V C I L K F C N - C Y S L K M - L W M K F A L S - N S V T D A I A - R C S F G - S L H . . . . . . 8600 AGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCA S D D H I V P H P S C E H A N E V S L P A M I I - C H I L V V N M P M K F L S Q - R - S Y S A T S - L - T C Q - S F S P . . . . . . 8540 GACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGC D - - P - E T P V - N N W F I K N H R S T D S R K K P R C E I I G L L R T I G A R L I A V R N P G V K - L V Y - E P - E . . . . . . 8480 AATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTA N L L L N I I I S K R A K K F L L Y I V I F S - I - - S A K G Q R S S S F I - Y Q S S L K Y N N Q Q K G K E V P P L Y S . . . . . . 8420 CAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATG Q - W R R T R G L V G L I A C S L L N M N D G E G L E G W - A - L R V P F - T - T M M E K D S R A G R L D C V F P S K H . . . . . . 8360 ATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATG I R T L L K K F Q V Y H L K I L G H Q M - G L C - R S F K F I I - K Y - D I K - D K D S V E E V S S L S S E N T R T S N . . . . . . 8300 ATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCA I A P E V T I - T P L A V R S S P I T P L L Q K - Q Y R L H - R - G P A Q - P H D C S R S N N I D S I S G E V Q P N N P . . . . . . 8240 TTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCG F W M T R I L Q L G T T C I A I L L V P S G - Q E F C S - G Q L A - L S S W S R I L D D K N S A V R D N L H S Y P L G P . . . . . . 8180 TTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAGTA F L R Q M M I L V F L I V I M R I K V V F S G R - - S W F S - - - S - G - K - Y V S Q A D D D L G F L D S N H E D K S S . . . . . . 8120 CCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGT P S S Y I I T G L R W K T L R M L T G C R A L I L - L A - D G K L - G C - Q D V T E L L Y Y N W P E M E N F E D V D R M . : . . . . . 8060 TCGG : AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGT S : E V V I Q H L E L E L V S K M T L V G R : K L - F N I W S W S - Y R R - P W L V F G : S C D S T F G V G A S I E D D L G W . . . . . . 7900 TTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTG F R H L V L L K D L E V D - G Q I W S L F V I W C Y - R I W R W I E V R F G V C F S S S G V I E G S G G G L R S D L E F . . . . . . 7840 CCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAA P S Q H P V H L K I S L E C R K L P G Q L L N I Q C T - K Y L W N A G S F Q V K A F S T S S A L E N I S G M Q E A S R S . . . . . . 7780 AGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTG R K Q A I Q L M I L A L K I N S S V R L G N R Q F N - - F W H - R S T L Q S D W K E T G N S I N D S G T K D Q L F S Q T . . . . . . 7720 GCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATG A V Q C H Q R M N Q P F - V I Y L L Q M Q F N A I R G - I S R S E S S I F Y K W G S S M P S E D E S A V L S H L S F T N . . . . . : . 7660 GTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTA V Q V I Q I S R - C P - R R : L I F T K L F K - F R F Q D S A H K E : D - S S Q N - G S S D S D F K I V P I K K : I N L H K I . . . . . . 5539 ACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGG T L S S R I N L R E K E N M F T W K M G L - A P E S I - G K K K T C L R G K W G N S K L Q N Q S E G K R K H V Y V E N G . . . . . . 5479 AGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTG R H S T I L I A F Q K R E T I L L Q S L D I Q L Y - - P S R R E K P S Y C N H W E T F N Y I D S L P E E R N H P T A I T . . . . . . 5419 GATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATT D L R L S H P Q V F S S T S K L M D L I I S G S H I H R Y S A A Q A S - W I - F G S Q A L T S T G I Q Q H K Q V D G S D . . . . . . 5359 TTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGA L G I F R M A F L T Y L Q I T V I Q I R W V F S G W L F L L I F R L Q S F R S D F G Y F Q D G F S Y L S S D Y S H S D Q . . . . . . 5299 CTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTT L R F V Q P Y P Q L N L K K A V S - L F Y G L S N P I H N - I - K K L S R D S F T T V C P T L S T I K S K K S C L V T L . . . . . . 5239 CTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTT L L R T P V R Q I R C S - W K A Y L I L C - G L L C D K S D A V D G K L T - S F S A K D S C A T N Q M Q L M E S L P D P . . . . . . 5179 CTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTT L F R W L V - E Q M K I W W T S Y F N V F S G G W Y R N K - K Y G G Q A T S T F S F Q V A G I G T N E N M V D K L L Q R . . . . . . 5119 CTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAG L - L S M K T T G I L K V S A R E F Q Q C N - A - K Q Q G S - K C Q H G N S S R S V I K H E N N R D L E S V S T G I P A . . . . . . 5059 AAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTT K - V P L L - R R A L A Q V L G - M K F S R F L Y C K G E L L H K F W V E - N F E V G S S I V K E S S C T S S G L N E I . . . . . : . 4999 CTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG : TTGGATGTAAGAA L R R Q I V F I S L N M S W N G : W M - E - G G R - F S S A - T C H G T : V G C K N S E E A D S F H Q L E H V M E R : L D V R . . . . . . 3977 CAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTA Q S Y G - G I A C I G W L R V L N K G L K A T D K G - L V S V G S E C - T K A - T K L R I R D S L Y R L A Q S A E Q R L . . . . . . 3917 GACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATG D M L I S I M D L V M I V T Q A E H L M T C - S Q - W I W - - - S H K Q S I - - R H A N L N N G S G D D S H T S R A F D . . : . . . . 3857 ATGATGGAGCATACAG : ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAG M M E H T : D A Q D I W T R R Q T L T L - - W S I Q : M H R I F G H G D R H - L Y R D D G A Y R : C T G Y L D T E T D T N S I . . . . . . 3519 ATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATT I D L L L T Y S S T G L Q T H Q - W L I S I Y C S L T L P Q A F K L I S D G - F D R S I A H L L F H R P S N S S V M A D . . . : . . . 3459 CTTTGGCTTTGGAGTCACCTTCCACG : ATTTTCGAGACATTACTCAGCCCACCAATGATTG L W L W S H L P R : F S R H Y S A H Q - L F G F G V T F H : D F R D I T Q P T N D - S L A L E S P S T : I F E T L L S P P M I . . . . . . 3315 ATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATT M R T - F L L E K M Q P N Q I K A R N I - E L D F C W R K C S R T R - R H E I L D E N L I S A G E N A A E P D K G T K Y . . . . . . 3255 AAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCT K Q A S I Q M G C V Y F N L C R M D S P N R L L Y K W V V F I S I Y V A W T R L - T G F Y T N G L C L F Q F M S H G L A . . . . . . 3195 ACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTG T C M C M - V S A M D T Y I L F C C L V H V C A C K Y L L W I L I Y S F V V - C Y M Y V H V S I C Y G Y L Y T L L L F S . . . . . . 3135 TAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTAC - F E E S K Q Y E N E D L C Q I A Y S Y N S K N L N S M R M R I Y V K - L T V T V I R R I - T V - E - G S M S N S L Q L . . . . . . 3075 TCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTA S C V C V - E L S R I S N E K L F H V R V F V Y E N Y Q E S Q M R N Y F M L V C L C M R I I K N L K - E I I S C Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-1_AGS-1_PPS_1 (8484 8057,7956 7620,5558 4953,3990 3842,3563 3434,3349 3254) (frame '0'; 1743 bp, 581 residues) 1 EQSSLKYNNQ QKGKEVPPLY STMMEKDSRA GRLDCVFPSK HDKDSVEEVS SLSSENTRTS 61 NDCSRSNNID SISGEVQPNN PILDDKNSAV RDNLHSYPLG PVSQADDDLG FLDSNHEDKS 121 STELLYYNWP EMENFEDVDR MFGSCDSTFG VGASIEDDLG WFSSSGVIEG SGGGLRSDLE 181 FAFSTSSALE NISGMQEASR SKETGNSIND SGTKDQLFSQ TGSSMPSEDE SAVLSHLSFT 241 NGSSDSDFKI VPIKKINLHK INSKLQNQSE GKRKHVYVEN GETFNYIDSL PEERNHPTAI 301 TGSQALTSTG IQQHKQVDGS DFGYFQDGFS YLSSDYSHSD QTTVCPTLST IKSKKSCLVT 361 LSAKDSCATN QMQLMESLPD PSFQVAGIGT NENMVDKLLQ RSVIKHENNR DLESVSTGIP 421 AEVGSSIVKE SSCTSSGLNE ISEEADSFHQ LEHVMERLDV RTKLRIRDSL YRLAQSAEQR 481 LRHANLNNGS GDDSHTSRAF DDDGAYRCTG YLDTETDTNS IDRSIAHLLF HRPSNSSVMA 541 DSLALESPST IFETLLSPPM IDENLISAGE NAAEPDKGTK Y- AGS-2 (7873 7620,5558 5396,5171 4953,3990 3842,3563 3554) SCR (e 1.000 d 0.989 a 0.989,e 1.000 d 0.373 a 0.747,e 1.000 d 0.994 a 0.000,e 1.000 d 0.986 a 0.997,e 1.000) Exon 1 7873 7620 ( 254 n); score: 1.000 Intron 1 7619 5559 (2061 n); Pd: 0.989 Pa: 0.989 Exon 2 5558 5396 ( 163 n); score: 1.000 Intron 2 5395 5172 ( 224 n); Pd: 0.373 Pa: 0.747 Exon 3 5171 4953 ( 219 n); score: 1.000 Intron 3 4952 3991 ( 962 n); Pd: 0.994 Pa: 0.000 Exon 4 3990 3842 ( 149 n); score: 1.000 Intron 4 3841 3564 ( 278 n); Pd: 0.986 Pa: 0.997 Exon 5 3563 3554 ( 10 n); score: 1.000 PGS (7873 7620,5558 5396,5171 4953,3990 3842,3563 3554) SGN-U319644+ 3-phase translation of AGS-2 (-strand): . . . . . . 7873 CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAA L E V D - G Q I W S L P S Q H P V H L K W R W I E V R F G V C L L N I Q C T - K G G G L R S D L E F A F S T S S A L E . . . . . . 7813 ATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATT I S L E C R K L P G Q R K Q A I Q L M I Y L W N A G S F Q V K G N R Q F N - - F N I S G M Q E A S R S K E T G N S I N D . . . . . . 7753 CTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAAT L A L K I N S S V R L A V Q C H Q R M N W H - R S T L Q S D W Q F N A I R G - I S G T K D Q L F S Q T G S S M P S E D E . . . . . . 7693 CAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAG Q P F - V I Y L L Q M V Q V I Q I S R - S R S E S S I F Y K W F K - F R F Q D S S A V L S H L S F T N G S S D S D F K I . . : . . . . 7633 TGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGG C P - R R : L I F T K L T L S S R I N L R A H K E : D - S S Q N - L - A P E S I - G V P I K K : I N L H K I N S K L Q N Q S E . . . . . . 5512 GAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTC E K E N M F T W K M G R H S T I L I A F K K K T C L R G K W G D I Q L Y - - P S G K R K H V Y V E N G E T F N Y I D S L . . . . . . : 5452 CAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG : GTG Q K R E T I L L Q S L D L R L S H P Q : V R R E K P S Y C N H W I S G S H I H R : W P E E R N H P T A I T G S Q A L T S T : G . . . . . . 5168 GCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAG A G I G T N E N M V D K L L Q R S V I K L V - E Q M K I W W T S Y F N V L - L S G W Y R N K - K Y G G Q A T S T F C N - . . . . . . 5108 CATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCC H E N N R D L E S V S T G I P A E V G S M K T T G I L K V S A R E F Q Q K - V P A - K Q Q G S - K C Q H G N S S R S R F . . . . . . 5048 TCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCA S I V K E S S C T S S G L N E I S E E A L L - R R A L A Q V L G - M K F L R R Q L Y C K G E L L H K F W V E - N F - G G . . . . : . . 4988 GATAGTTTTCATCAGCTTGAACATGTCATGGAACGG : TTGGATGTAAGAACAAAGCTACGG D S F H Q L E H V M E R : L D V R T K L R I V F I S L N M S W N G : W M - E Q S Y G R - F S S A - T C H G T : V G C K N K A T . . . . . . 3966 ATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAAT I R D S L Y R L A Q S A E Q R L R H A N - G I A C I G W L R V L N K G L D M L I D K G - L V S V G S E C - T K A - T C - . . . . . . 3906 CTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCA L N N G S G D D S H T S R A F D D D G A S I M D L V M I V T Q A E H L M M M E H S Q - W I W - - - S H K Q S I - - - W S . : . 3846 TACAG : ATGCACAGGA Y R : C T G T : D A Q I Q : M H R Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-1_AGS-2_PPS_1 (7624 7620,5558 5396,5171 4953,3990 3842,3563 3554) (frame '1'; 546 bp, 182 residues) 1 RRLIFTKLTL SSRINLREKE NMFTWKMGRH STILIAFQKR ETILLQSLDL RLSHPQVAGI 61 GTNENMVDKL LQRSVIKHEN NRDLESVSTG IPAEVGSSIV KESSCTSSGL NEISEEADSF 121 HQLEHVMERL DVRTKLRIRD SLYRLAQSAE QRLRHANLNN GSGDDSHTSR AFDDDGAYRC 181 TG PGL 2 (+ strand): 14305 26581 AGS-1 (14305 14428,14884 15165,16225 16251) SCR (e 0.895 d 0.000 a 0.000,e 0.888 d 0.889 a 0.000,e 0.704) Exon 1 14305 14428 ( 124 n); score: 0.895 Intron 1 14429 14883 ( 455 n); Pd: 0.000 Pa: 0.000 Exon 2 14884 15165 ( 282 n); score: 0.888 Intron 2 15166 16224 (1059 n); Pd: 0.889 Pa: 0.000 Exon 3 16225 16251 ( 27 n); score: 0.704 PGS (14305 14428,14884 15019) SGN-U334276+ PGS (14391 14428,14884 15165,16225 16251) SGN-U313328+ PGS (15058 15176) SGN-U334277- PGS (15067 15134) SGN-U317986- PGS (15114 15171) SGN-U345977+ 3-phase translation of AGS-1 (+strand): . . . . . . 14305 AATGTAAGGGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAAGTACTTTTGAAA N V R A R L D G L N K S S F K K V L L K M - G P V W M G L I K A A L K K Y F - K C K G P F G W A - - K Q L - K S T F E . . . . . . 14365 GTGCTGAAACTTATTTTTAAAATAAGCAGTTATGCGTTTGGATAAAAGTGATGAAGTTAA V L K L I F K I S S Y A F G - K - - S - C - N L F L K - A V M R L D K S D E V K S A E T Y F - N K Q L C V W I K V M K L . : . . . . . 14425 AAAA : CCACACGTGAAAAGGAAAAAATAGAAGAAAGAGATGTTAGGATTATGTGGGTAATT K : T T R E K E K I E E R D V R I M W V I K : P H V K R K K - K K E M L G L C G - F K N : H T - K G K N R R K R C - D Y V G N . . . . . . 14940 TGAAGATTGTATAAAAATATTAAGGGCAAACAGGTAAAAATGTGGTCAACTTAAAACAGC - R L Y K N I K G K Q V K M W S T - N S E D C I K I L R A N R - K C G Q L K T A L K I V - K Y - G Q T G K N V V N L K Q . . . . . . 15000 TTATAAGCTGGGGAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGACTTAAAATAAG L - A G E K K H P Y P S F - L L T - N K Y K L G K K S T P T P A F N F - L K I S L I S W G K K A P L P Q L L T F D L K - . . . . . . 15060 TTTTTTTTAACTTAAAATAAGTTGTTTTGAGTATTGTCAAACAGCTAAATAAGTCAAAAA F F L T - N K L F - V L S N S - I S Q K F F - L K I S C F E Y C Q T A K - V K N V F F N L K - V V L S I V K Q L N K S K . . . . . : . 15120 CCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAG : GAACTCAGATAAAT P A F K S V - P A F K L S Q T : G T Q I N Q L L S Q F D Q L L S - A K Q : E L R - I T S F - V S L T S F - A E P N R : N S D K . . 16239 TCTTTTCTTCTTT S F L L L F F F F F S S Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (14394 14428,14884 15173,15989 15995,16963 16968,18902 18925) SCR (e 0.829 d 0.000 a 0.000,e 0.866 d 0.000 a 0.979,e 0.857 d 0.000 a 0.950,e 0.833 d 0.000 a 0.914,e 0.750) Exon 1 14394 14428 ( 35 n); score: 0.829 Intron 1 14429 14883 ( 455 n); Pd: 0.000 Pa: 0.000 Exon 2 14884 15173 ( 290 n); score: 0.866 Intron 2 15174 15988 ( 815 n); Pd: 0.000 Pa: 0.979 Exon 3 15989 15995 ( 7 n); score: 0.857 Intron 3 15996 16962 ( 967 n); Pd: 0.000 Pa: 0.950 Exon 4 16963 16968 ( 6 n); score: 0.833 Intron 4 16969 18901 (1933 n); Pd: 0.000 Pa: 0.914 Exon 5 18902 18925 ( 24 n); score: 0.750 PGS (14394 14428,14884 15173,15989 15995,16963 16968,18902 18925) SGN-U313322- 3-phase translation of AGS-2 (+strand): . . . . : . . 14394 TTATGCGTTTGGATAAAAGTGATGAAGTTAAAAAA : CCACACGTGAAAAGGAAAAAATAGA L C V W I K V M K L K N : H T - K G K N R Y A F G - K - - S - K : T T R E K E K I E M R L D K S D E V K K : P H V K R K K - . . . . . . 14909 AGAAAGAGATGTTAGGATTATGTGGGTAATTTGAAGATTGTATAAAAATATTAAGGGCAA R K R C - D Y V G N L K I V - K Y - G Q E R D V R I M W V I - R L Y K N I K G K K K E M L G L C G - F E D C I K I L R A . . . . . . 14969 ACAGGTAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTGGGGAAAAAAAGCACCCCTA T G K N V V N L K Q L I S W G K K A P L Q V K M W S T - N S L - A G E K K H P Y N R - K C G Q L K T A Y K L G K K S T P . . . . . . 15029 CCCCAGCTTTTAACTTTTGACTTAAAATAAGTTTTTTTTAACTTAAAATAAGTTGTTTTG P Q L L T F D L K - V F F N L K - V V L P S F - L L T - N K F F L T - N K L F - T P A F N F - L K I S F F - L K I S C F . . . . . . 15089 AGTATTGTCAAACAGCTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTT S I V K Q L N K S K T S F - V S L T S F V L S N S - I S Q K P A F K S V - P A F E Y C Q T A K - V K N Q L L S Q F D Q L . . . : . : : . . 15149 TAAGCTGAGCCAAACAGGCTCTAAA : GCTGGAG : ATATTG : AATCCCTAAGTATGTTCAGAAT - A E P N R L - : S W R : Y - : I P K Y V Q N K L S Q T G S K : A G : D I : E S L S M F R I L S - A K Q A L K : L E : I L : N P - V C S E . 18924 AA - Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (14973 15165,22949 22965,26561 26581) SCR (e 0.876 d 0.889 a 0.970,e 0.647 d 0.000 a 0.000,e 0.714) Exon 1 14973 15165 ( 193 n); score: 0.876 Intron 1 15166 22948 (7783 n); Pd: 0.889 Pa: 0.970 Exon 2 22949 22965 ( 17 n); score: 0.647 Intron 2 22966 26560 (3595 n); Pd: 0.000 Pa: 0.000 Exon 3 26561 26581 ( 21 n); score: 0.714 PGS (14973 15165,22949 22965,26561 26581) SGN-U313325- 3-phase translation of AGS-3 (+strand): . . . . . . 14973 GTAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTGGGGAAAAAAAGCACCCCTACCCC V K M W S T - N S L - A G E K K H P Y P - K C G Q L K T A Y K L G K K S T P T P K N V V N L K Q L I S W G K K A P L P . . . . . . 15033 AGCTTTTAACTTTTGACTTAAAATAAGTTTTTTTTAACTTAAAATAAGTTGTTTTGAGTA S F - L L T - N K F F L T - N K L F - V A F N F - L K I S F F - L K I S C F E Y Q L L T F D L K - V F F N L K - V V L S . . . . . . 15093 TTGTCAAACAGCTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAG L S N S - I S Q K P A F K S V - P A F K C Q T A K - V K N Q L L S Q F D Q L L S I V K Q L N K S K T S F - V S L T S F - . . : . : . . . 15153 CTGAGCCAAACAG : GGTTCATGATTTACTTC : TGCTGACTTATCGAATATTTT L S Q T : G F M I Y F : C - L I E Y F - A K Q : G S - F T S : A D L S N I A E P N R : V H D L L : L L T Y R I F Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (15501 15657,15735 15858,16980 17190,18997 19140) SCR (e 1.000 d 0.000 a 0.000,e 1.000 d 0.000 a 0.000,e 1.000 d 0.000 a 0.000,e 0.993) Exon 1 15501 15657 ( 157 n); score: 1.000 Intron 1 15658 15734 ( 77 n); Pd: 0.000 Pa: 0.000 Exon 2 15735 15858 ( 124 n); score: 1.000 Intron 2 15859 16979 (1121 n); Pd: 0.000 Pa: 0.000 Exon 3 16980 17190 ( 211 n); score: 1.000 Intron 3 17191 18996 (1806 n); Pd: 0.000 Pa: 0.000 Exon 4 18997 19140 ( 144 n); score: 0.993 PGS (15501 15657,15735 15858,16980 17190,18997 19140) SGN-U330601- 3-phase translation of AGS-4 (+strand): . . . . . . 15501 ACTGTTTCTCCTGGTTCGAGCACATCAGCAATTCGCCTCTTCATCTTTCCTAGTTGTTCT T V S P G S S T S A I R L F I F P S C S L F L L V R A H Q Q F A S S S F L V V L C F S W F E H I S N S P L H L S - L F . . . . . . 15561 GATGTAAGGTCTTGAATCTCATCTTCATTTGATATCTTGATAGCTTTCTTCCCAGAATAT D V R S - I S S S F D I L I A F F P E Y M - G L E S H L H L I S - - L S S Q N M - C K V L N L I F I - Y L D S F L P R I . . . . : . . 15621 GTTTTCTCAGTATCAACACTATCAAGCCATGCATCCT : TTATCTCATTTTCATTTAAATAT V F S V S T L S S H A S : F I S F S F K Y F S Q Y Q H Y Q A M H P : L S H F H L N I C F L S I N T I K P C I L : Y L I F I - I . . . . . . 15758 TCAACATAGTTTCCTGATGCATCAAAATAACCTTCTTCTCTCTCTTTATTCAGATTAAAA S T - F P D A S K - P S S L S L F R L K Q H S F L M H Q N N L L L S L Y S D - K F N I V S - C I K I T F F S L F I Q I K . . . . . : . 15818 GGTTCTATTGCAATCCCATCATCAATGAATGTTTCATTTTC : CTCATATTCCACTTCTGCC G S I A I P S S M N V S F S : S Y S T S A V L L Q S H H Q - M F H F : P H I P L L P R F Y C N P I I N E C F I F : L I F H F C . . . . . . 16999 CGCGATATGTCAGCTATTTCACCTTCGTTTTCTTCATCAAGGAGTTCCGCTGTTATTTGA R D M S A I S P S F S S S R S S A V I - A I C Q L F H L R F L H Q G V P L L F D P R Y V S Y F T F V F F I K E F R C Y L . . . . . . 17059 TTCCGCCGTGCCGAACGCTCTTTGGCTGCATTGCGAGGATCTGTCCGCCCACTAGGTTTA F R R A E R S L A A L R G S V R P L G L S A V P N A L W L H C E D L S A H - V Y I P P C R T L F G C I A R I C P P T R F . . . . . . 17119 TCTTCACACCCATCAATCGTGGTATCGCCCTGCTTTGCCTTCTTACCCTTTGGGAACCTT S S H P S I V V S P C F A F L P F G N L L H T H Q S W Y R P A L P S Y P L G T L I F T P I N R G I A L L C L L T L W E P . . : . . . . 17179 ACACGCTTCTGC : TCTGGAGCTTTATTGGAGTCATCGTCCTCAACGAAGGGACGTTTGGCA T R F C : S G A L L E S S S S T K G R L A H A S A : L E L Y W S H R P Q R R D V W H Y T L L : L W S F I G V I V L N E G T F G . . . . . . 19045 CGTCGCGATGAACCTTCTTCCATGGCGTAATCGGCAATTGATATGAAGGATTCAGAAAGG R R D E P S S M A - S A I D M K D S E R V A M N L L P W R N R Q L I - R I Q K G T S R - T F F H G V I G N - Y E G F R K . . . . 19105 AAAAAAAATGAAGGGGCAAAGTGAAGAGAGAGCGGT K K N E G A K - R E S G K K M K G Q S E E R A E K K - R G K V K R E R Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-2_AGS-4_PPS_1 (15775 15858,16980 17190,18997 19055) (frame '0'; 351 bp, 117 residues) 1 CIKITFFSLF IQIKRFYCNP IINECFIFLI FHFCPRYVSY FTFVFFIKEF RCYLIPPCRT 61 LFGCIARICP PTRFIFTPIN RGIALLCLLT LWEPYTLLLW SFIGVIVLNE GTFGTSR- AGS-5 (21219 21748,22613 22803) SCR (e 0.888 d 0.000 a 0.000,e 0.825) Exon 1 21219 21748 ( 530 n); score: 0.888 Intron 1 21749 22612 ( 864 n); Pd: 0.000 Pa: 0.000 Exon 2 22613 22803 ( 191 n); score: 0.825 PGS (21219 21748,22613 22803) SGN-U326781- 3-phase translation of AGS-5 (+strand): . . . . . . 21219 GCAAGACCACTCTTGCGAGAAACCTCTACAGAAGTCCTAGTATATAGTCAATACCTTCCC A R P L L R E T S T E V L V Y S Q Y L P Q D H S C E K P L Q K S - Y I V N T F P K T T L A R N L Y R S P S I - S I P S . . . . . . 21279 TACACGTGTGTCGATATGTGTTTCTCAAGAGTGCAACACAATGGATCTTCTTAAGACTAT Y T C V D M C F S R V Q H N G S S - D Y T R V S I C V S Q E C N T M D L L K T I L H V C R Y V F L K S A T Q W I F L R L . . . . . . 21339 CATAAAATCCATCCAAGTTTGCACCAACGAAACTCTTGATTTGTTGGAAAGGATGGCAGA H K I H P S L H Q R N S - F V G K D G R I K S I Q V C T N E T L D L L E R M A E S - N P S K F A P T K L L I C W K G W Q . . . . . . 21399 AAGAGATCTAGAAATTTACCTTCGTAAGCTATTAACAAAACACAAATACCTTTTGGTGGT K R S R N L P S - A I N K T Q I P F G G R D L E I Y L R K L L T K H K Y L L V V K E I - K F T F V S Y - Q N T N T F W W . . . . . . 21459 TGATGGTGTGTGGCTAATAGAAGCATGGAAGAGTTTGAAAAGAGCATTTCCGGATAACAA - W C V A N R S M E E F E K S I S G - Q D G V W L I E A W K S L K R A F P D N N L M V C G - - K H G R V - K E H F R I T . . . . . . 21519 TAATGGCAGCAGAGTTGTTATTACCACACGCAAAGTGGATGTCGCTGAAAGAGCAGACGA - W Q Q S C Y Y H T Q S G C R - K S R R N G S R V V I T T R K V D V A E R A D D I M A A E L L L P H A K W M S L K E Q T . . . . . . 21579 CAGAGGTTTTGTCCATGAACTTCGTTTCCTAAGCCAAGAAGAAAGTTGGGATTCTTTTGT Q R F C P - T S F P K P R R K L G F F C R G F V H E L R F L S Q E E S W D S F V T E V L S M N F V S - A K K K V G I L L . . . . . . 21639 AGGAAACTACTTGATGTTCGATCAATGGTTACAGCAATGGAAAGTCTAGCTAAGGATATG R K L L D V R S M V T A M E S L A K D M G N Y L M F D Q W L Q Q W K V - L R I W - E T T - C S I N G Y S N G K S S - G Y . . . . . : . 21699 GTGGAAAAGTGTAGAGGCTTACCTCTTGCAATTGTTGTATTGAGCGGATT : ACTTTCGCAT V E K C R G L P L A I V V L S G L : L S H W K S V E A Y L L Q L L Y - A D : Y F R I G G K V - R L T S C N C C I E R I : T F A . . . . . . 22623 AAAATGGGGCTAGACGAATGGCAAAAGGTGAAAGACTGCCTTTGGAAGAACATTGAAGAT K M G L D E W Q K V K D C L W K N I E D K W G - T N G K R - K T A F G R T L K M - N G A R R M A K G E R L P L E E H - R . . . . . . 22683 GACTCTATTGAAATCTCCTATATACTATCATTGAGCTATAATGATTTGTCAATTGTGCTC D S I E I S Y I L S L S Y N D L S I V L T L L K S P I Y Y H - A I M I C Q L C S - L Y - N L L Y T I I E L - - F V N C A . . . . . . 22743 AAGCAATGTTTTCTGTACTTTGATATTTTTCCAGAAGATCAAGTGGTCGATGTTGAGAAC K Q C F L Y F D I F P E D Q V V D V E N S N V F C T L I F F Q K I K W S M L R T Q A M F S V L - Y F S R R S S G R C - E . 22803 A Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-2_AGS-5_PPS_1 (21259 21687) (frame '2'; 426 bp, 142 residues) 1 YIVNTFPTRV SICVSQECNT MDLLKTIIKS IQVCTNETLD LLERMAERDL EIYLRKLLTK 61 HKYLLVVDGV WLIEAWKSLK RAFPDNNNGS RVVITTRKVD VAERADDRGF VHELRFLSQE 121 ESWDSFVGNY LMFDQWLQQW KV- AGS-6 (21641 21672,21969 22266) SCR (e 0.719 d 0.000 a 0.993,e 0.752) Exon 1 21641 21672 ( 32 n); score: 0.719 Intron 1 21673 21968 ( 296 n); Pd: 0.000 Pa: 0.993 Exon 2 21969 22266 ( 298 n); score: 0.752 PGS (21641 21672,21969 22266) SGN-U323277+ 3-phase translation of AGS-6 (+strand): . . . . : . . 21641 GAAACTACTTGATGTTCGATCAATGGTTACAG : AAACACGAAGTTACCAAGTTTAATGAAC E T T - C S I N G Y R : N T K L P S L M N K L L D V R S M V T : E T R S Y Q V - - T N Y L M F D Q W L Q : K H E V T K F N E . . . . . . 21997 CAGTGAAGAATAGAAGAATAGAAGAACTGAAATTAATTCACAAATCTAAAATTTGTAAAA Q - R I E E - K N - N - F T N L K F V K S E E - K N R R T E I N S Q I - N L - N P V K N R R I E E L K L I H K S K I C K . . . . . . 22057 CACGTACCAGAATCTGAAAAAAAATTTAATAGGAAAAAGATCAAGTCCACTGAATTCACA H V P E S E K K F N R K K I K S T E F T T Y Q N L K K N L I G K R S S P L N S Q T R T R I - K K I - - E K D Q V H - I H . . . . . . 22117 GTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATGACCT V S P - G N Y S P L V S E V - F G I - P C P L K E I I P L - Y P R F D L E Y D L S V P L R K L F P S S I R G L I W N M T . . . . . . 22177 CCTAGGGTAAAATGATCTCAATCACCAGAGTATAGATACCAAAAACTCCGGTGTCAGCGA P R V K - S Q S P E Y R Y Q K L R C Q R L G - N D L N H Q S I D T K N S G V S E S - G K M I S I T R V - I P K T P V S A . . . 22237 ACCACTCAACGGCAGTAAAGTACACTTAGA T T Q R Q - S T L R P L N G S K V H L N H S T A V K Y T - Maximal non-overlapping open reading frames (>= 64 codons): none AGS-7 (21754 21850) SCR (e 0.928) Exon 1 21754 21850 ( 97 n); score: 0.928 PGS (21754 21850) SGN-U342909- 3-phase translation of AGS-7 (+strand): . . . . . . 21754 TCATCTTGTATTCCAAACATACTTAGAACAAAACTTTGAACATCTTTGTAAGAAAACAAA S S C I P N I L R T K L - T S L - E N K H L V F Q T Y L E Q N F E H L C K K T K I L Y S K H T - N K T L N I F V R K Q . . . . 21814 GTTTAAGAACATTTTCACAACTAGAAAATTAAAACTA V - E H F H N - K I K T F K N I F T T R K L K L S L R T F S Q L E N - N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-7 (-strand): . . . . . . 21850 TAGTTTTAATTTTCTAGTTGTGAAAATGTTCTTAAACTTTGTTTTCTTACAAAGATGTTC - F - F S S C E N V L K L C F L T K M F S F N F L V V K M F L N F V F L Q R C S V L I F - L - K C S - T L F S Y K D V . . . . 21790 AAAGTTTTGTTCTAAGTATGTTTGGAATACAAGATGA K V L F - V C L E Y K M K F C S K Y V W N T R - Q S F V L S M F G I Q D Maximal non-overlapping open reading frames (>= 64 codons): none PGL 3 (+ strand): 26933 27677 AGS-1 (26933 26974,27057 27463) SCR (e 0.786 d 0.000 a 0.000,e 0.835) Exon 1 26933 26974 ( 42 n); score: 0.786 Intron 1 26975 27056 ( 82 n); Pd: 0.000 Pa: 0.000 Exon 2 27057 27463 ( 407 n); score: 0.835 PGS (26933 26974,27057 27463) SGN-U322569+ 3-phase translation of AGS-1 (+strand): . . . . . : . 26933 AGGGAAAAGGGTCTGATATACCCCTCAACTTTGTCATTTGGA : AAAATGGCTCACATATAT R E K G L I Y P S T L S F G : K M A H I Y G K R V - Y T P Q L C H L E : K W L T Y I G K G S D I P L N F V I W : K N G S H I . . . . . . 27075 CCTTCATTTCACGAAAGCTAAAAAATTAGTTTTAAATTTATATTTATTACTTCTAAAAAA P S F H E S - K I S F K F I F I T S K K L H F T K A K K L V L N L Y L L L L K K S F I S R K L K N - F - I Y I Y Y F - K . . . . . . 27135 AATTTAAAAATTATTTAGGGGTATATATGATTCTTCTATCAAAGTTCAAGGTATATTTTA N L K I I - G Y I - F F Y Q S S R Y I L I - K L F R G I Y D S S I K V Q G I F - K F K N Y L G V Y M I L L S K F K V Y F . . . . . . 27195 ATTTTTTTTCATATATTAATTATTTTTTGACTTCTTTTATTATAATTATTTGAATTTCTT I F F H I L I I F - L L L L - L F E F L F F F I Y - L F F D F F Y Y N Y L N F L N F F S Y I N Y F L T S F I I I I - I S . . . . . . 27255 ATTCTTATTTTGTTTTTTCTTTCATTCCTTAGTTTAAAGAATAAAAAATTAAACTATTTT I L I L F F L S F L S L K N K K L N Y F F L F C F F F H S L V - R I K N - T I F Y S Y F V F S F I P - F K E - K I K L F . . . . . . 27315 TTTTGTGTGTATTGTAATTTAATTTCGTATTTGAAGAAAAAATTTGGTCATCTACAATAA F C V Y C N L I S Y L K K K F G H L Q - F V C I V I - F R I - R K N L V I Y N K F L C V L - F N F V F E E K I W S S T I . . . . . . 27375 GTTTTACAAGAATATTAGTGAAACATAAATAAATTTGATTATCAAAATAATAATTATAAA V L Q E Y - - N I N K F D Y Q N N N Y K F Y K N I S E T - I N L I I K I I I I N S F T R I L V K H K - I - L S K - - L - . . . 27435 CTAGTCATTGAAACAAAAAAAAAAGTCAA L V I E T K K K V - S L K Q K K K S T S H - N K K K S Q Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (26933 27374) SCR (e 0.904) Exon 1 26933 27374 ( 442 n); score: 0.904 PGS (26933 27374) SGN-U344226- 3-phase translation of AGS-2 (+strand): . . . . . . 26933 AGGGAAAAGGGTCTGATATACCCCTCAACTTTGTCATTTGGAGTTGATATACCCCTCGTT R E K G L I Y P S T L S F G V D I P L V G K R V - Y T P Q L C H L E L I Y P S L G K G S D I P L N F V I W S - Y T P R . . . . . . 26993 ATAAAAGTGGCTCATATATGCCCTTACCGTTATATAAACGGCTCACATATACCCCTACCG I K V A H I C P Y R Y I N G S H I P L P - K W L I Y A L T V I - T A H I Y P Y R Y K S G S Y M P L P L Y K R L T Y T P T . . . . . . 27053 TTACAAAATGGCTCACATATATCCTTCATTTCACGAAAGCTAAAAAATTAGTTTTAAATT L Q N G S H I S F I S R K L K N - F - I Y K M A H I Y P S F H E S - K I S F K F V T K W L T Y I L H F T K A K K L V L N . . . . . . 27113 TATATTTATTACTTCTAAAAAAAATTTAAAAATTATTTAGGGGTATATATGATTCTTCTA Y I Y Y F - K K F K N Y L G V Y M I L L I F I T S K K N L K I I - G Y I - F F Y L Y L L L L K K I - K L F R G I Y D S S . . . . . . 27173 TCAAAGTTCAAGGTATATTTTAATTTTTTTTCATATATTAATTATTTTTTGACTTCTTTT S K F K V Y F N F F S Y I N Y F L T S F Q S S R Y I L I F F H I L I I F - L L L I K V Q G I F - F F F I Y - L F F D F F . . . . . . 27233 ATTATAATTATTTGAATTTCTTATTCTTATTTTGTTTTTTCTTTCATTCCTTAGTTTAAA I I I I - I S Y S Y F V F S F I P - F K L - L F E F L I L I L F F L S F L S L K Y Y N Y L N F L F L F C F F F H S L V - . . . . . . 27293 GAATAAAAAATTAAACTATTTTTTTTGTGTGTATTGTAATTTAATTTCGTATTTGAAGAA E - K I K L F F L C V L - F N F V F E E N K K L N Y F F C V Y C N L I S Y L K K R I K N - T I F F V C I V I - F R I - R . . . 27353 AAAATTTGGTCATCTACAATAA K I W S S T I K F G H L Q - K N L V I Y N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 27374 TTATTGTAGATGACCAAATTTTTTCTTCAAATACGAAATTAAATTACAATACACACAAAA L L - M T K F F L Q I R N - I T I H T K Y C R - P N F F F K Y E I K L Q Y T Q K I V D D Q I F S S N T K L N Y N T H K . . . . . . 27314 AAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAACAAAATAAGAAT K I V - F F I L - T K E - K K K Q N K N K - F N F L F F K L R N E R K N K I R I K N S L I F Y S L N - G M K E K T K - E . . . . . . 27254 AAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTAATATATGAAAAAAAAT K K F K - L - - K K S K N N - Y M K K N R N S N N Y N K R S Q K I I N I - K K I - E I Q I I I I K E V K K - L I Y E K K . . . . . . 27194 TAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATAATTTTTAAATT - N I P - T L I E E S Y I P L N N F - I K I Y L E L - - K N H I Y P - I I F K F L K Y T L N F D R R I I Y T P K - F L N . . . . . . 27134 TTTTTTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAGCTTTCGTGAAATGAAGG F F R S N K Y K F K T N F L A F V K - R F L E V I N I N L K L I F - L S - N E G F F - K - - I - I - N - F F S F R E M K . . . . . . 27074 ATATATGTGAGCCATTTTGTAACGGTAGGGGTATATGTGAGCCGTTTATATAACGGTAAG I Y V S H F V T V G V Y V S R L Y N G K Y M - A I L - R - G Y M - A V Y I T V R D I C E P F C N G R G I C E P F I - R - . . . . . . 27014 GGCATATATGAGCCACTTTTATAACGAGGGGTATATCAACTCCAAATGACAAAGTTGAGG G I Y E P L L - R G V Y Q L Q M T K L R A Y M S H F Y N E G Y I N S K - Q S - G G H I - A T F I T R G I S T P N D K V E . . . 26954 GGTATATCAGACCCTTTTCCCT G I S D P F P V Y Q T L F P G Y I R P F S Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (27565 27677) SCR (e 0.832) Exon 1 27565 27677 ( 113 n); score: 0.832 PGS (27565 27677) SGN-U344226+ 3-phase translation of AGS-3 (+strand): . . . . . . 27565 AGTATATCTGAGTCATTTGTTTACAAGTAGGGGTATATATGAGTCACTTTCATAATAAGG S I S E S F V Y K - G Y I - V T F I I R V Y L S H L F T S R G I Y E S L S - - G Y I - V I C L Q V G V Y M S H F H N K . . . . . . 27625 GGTATATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCT G I S A L N D K V E G Y I R P F S V Y Q L - M T K L R G I S D P F P G Y I S S K - Q S - G V Y Q T L F P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (-strand): . . . . . . 27677 AGGGAAAAGGGTCTGATATACCCCTCAACTTTGTCATTTAGAGCTGATATACCCCTTATT R E K G L I Y P S T L S F R A D I P L I G K R V - Y T P Q L C H L E L I Y P L L G K G S D I P L N F V I - S - Y T P Y . . . . . . 27617 ATGAAAGTGACTCATATATACCCCTACTTGTAAACAAATGACTCAGATATACT M K V T H I Y P Y L - T N D S D I - K - L I Y T P T C K Q M T Q I Y Y E S D S Y I P L L V N K - L R Y T Maximal non-overlapping open reading frames (>= 64 codons): none PGL 4 (- strand): 34938 27395 AGS-1 (32450 32314,28748 28691,28362 28337,27434 27395) SCR (e 0.876 d 0.000 a 0.000,e 0.595 d 0.211 a 0.000,e 0.654 d 0.581 a 0.000,e 0.712) Exon 1 32450 32314 ( 137 n); score: 0.876 Intron 1 32313 28749 (3565 n); Pd: 0.000 Pa: 0.000 Exon 2 28748 28691 ( 58 n); score: 0.595 Intron 2 28690 28363 ( 328 n); Pd: 0.211 Pa: 0.000 Exon 3 28362 28337 ( 26 n); score: 0.654 Intron 3 28336 27435 ( 902 n); Pd: 0.581 Pa: 0.000 Exon 4 27434 27395 ( 40 n); score: 0.712 PGS (32450 32314,28748 28691,28362 28337,27434 27395) SGN-U328344- 3-phase translation of AGS-1 (-strand): . . . . . . 32450 TGTATTGTGTCATGTAGGACTCATGTGTTTATTTATTTAAAAGTTGGATAGTTAAAGTGT C I V S C R T H V F I Y L K V G - L K C V L C H V G L M C L F I - K L D S - S V Y C V M - D S C V Y L F K S W I V K V . . . . . . 32390 CTGTTTGTGCATTATGAAAGTTGGAGGTCAAAGTTAAAATTTGAAGGCAAATTTAGGGTC L F V H Y E S W R S K L K F E G K F R V C L C I M K V G G Q S - N L K A N L G S S V C A L - K L E V K V K I - R Q I - G . . : . . . . 32330 CAATATATGTATTATGC : TTTTGATTGAAAAAAGGGGTAGCTGTATGGAAATTTAACACTT Q Y M Y Y A : F D - K K G - L Y G N L T L N I C I M : L L I E K R G S C M E I - H F P I Y V L C : F - L K K G V A V W K F N T . . : . . . : . 28705 TTTTGTTTGCAAAAG : AAAGTTATGTCCATCAAAATTAGATT : TTTATAATTATTATTTTGA F C L Q K : K V M S I K I R F : L - L L F - F V C K R : K L C P S K L D : F Y N Y Y F D F L F A K : E S Y V H Q N - I : F I I I I L . . . 27415 TAATCAAATTTATTTATGTTT - S N L F M F N Q I Y L C I I K F I Y V Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (34938 34824,33923 33918,29959 29361) SCR (e 0.913 d 0.000 a 0.981,e 0.667 d 0.900 a 0.000,e 0.878) Exon 1 34938 34824 ( 115 n); score: 0.913 Intron 1 34823 33924 ( 900 n); Pd: 0.000 Pa: 0.981 Exon 2 33923 33918 ( 6 n); score: 0.667 Intron 2 33917 29960 (3958 n); Pd: 0.900 Pa: 0.000 Exon 3 29959 29361 ( 599 n); score: 0.878 PGS (34938 34824,33923 33918,29959 29361) SGN-U326781+ 3-phase translation of AGS-2 (-strand): . . . . . . 34938 GTTTTCAGCCTCGAGCTCTTGATCTTCTGGAAAAATACCGAAGTAGAGAAAACACTGCTT V F S L E L L I F W K N T E V E K T L L F S A S S S - S S G K I P K - R K H C L F Q P R A L D L L E K Y R S R E N T A . . . . . . : 34878 GAGCTCAGTTGACAAATCATTGTAGCTTAATGATAGTATGTAGGAGATTTCAATA : AATTT E L S - Q I I V A - - - Y V G D F N : K F S S V D K S L - L N D S M - E I S I : N L - A Q L T N H C S L M I V C R R F Q - : I . : . . . . . 33918 G : TCATCTTGAATGTTCTGCCAAAAGTGATCTTTCACTTTTTGCCATTGGTCTAGCCCCCT : V I L N V L P K V I F H F L P L V - P P : S S - M F C Q K - S F T F C H W S S P L C : H L E C S A K S D L S L F A I G L A P . . . . . . 29900 TTTATGTGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAGCCTCTACACTTTTC F M - K - S A Q Y N N C K R - A S T L F L C E S S P L N T T I A R G K P L H F S F Y V K V V R S I Q Q L Q E V S L Y T F . . . . . . 29840 CACCATATCTTTAGCTATCCTTACCATTTCTGGAACCATTGCCCGAACATCAAGTTGTTT H H I F S Y P Y H F W N H C P N I K L F T I S L A I L T I S G T I A R T S S C F P P Y L - L S L P F L E P L P E H Q V V . . . . . . 29780 CCTACAAAAGAGGTCCCAACTTTCTTTTTGGCTTAGGAAACGAAGGTTATGGACAAAACC P T K E V P T F F L A - E T K V M D K T L Q K R S Q L S F W L R K R R L W T K P S Y K R G P N F L F G L G N E G Y G Q N . . . . . . 29720 TCTGTTGTCAGCTCTTTCCGCAACATCATGTTTCCGCGTGGTAATAATAACTCTGCTGCC S V V S S F R N I M F P R G N N N S A A L L S A L S A T S C F R V V I I T L L P L C C Q L F P Q H H V S A W - - - L C C . . . . . . 29660 CTTCTTGCTATCTGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTCTGCCATACATC L L A I W E C S F Q T L P C F S L P Y I F L L S G N A L F K L S H A S L C H T S P S C Y L G M L F S N S P M L L S A I H . . . . . . 29600 ATCAACCACTACAAGGTATTTGCCTTCTTTCAATAGATCACGAAGGTAAATTTCTAGATC I N H Y K V F A F F Q - I T K V N F - I S T T T R Y L P S F N R S R R - I S R S H Q P L Q G I C L L S I D H E G K F L D . . . . . . 29540 GCTTTCTGTCATCCTTTCCAAGAAATCTAGAGTTCCCTTAGTGCGACCTTGGATGGATTT A F C H P F Q E I - S S L S A T L D G F L S V I L S K K S R V P L V R P W M D F R F L S S F P R N L E F P - C D L G W I . . . . . . 29480 TATGATATTCTTAAGAAGATCCATTGTGTTGTACTCTTGAGAAACACATATCCAAGCGCG Y D I L K K I H C V V L L R N T Y P S A M I F L R R S I V L Y S - E T H I Q A R L - Y S - E D P L C C T L E K H I S K R . . . . . . 29420 TGTAGGGAAGCTTGACACTATATTAGGATTGTTGTAGAGGTTTCTTGCAAGAGTGGTCTT C R E A - H Y I R I V V E V S C K S G L V G K L D T I L G L L - R F L A R V V V - G S L T L Y - D C C R G F L Q E W S Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-4_AGS-2_PPS_1 (29932 29552) (frame '2'; 378 bp, 126 residues) 1 SFTFCHWSSP LLCESSPLNT TIARGKPLHF STISLAILTI SGTIARTSSC FLQKRSQLSF 61 WLRKRRLWTK PLLSALSATS CFRVVIITLL PFLLSGNALF KLSHASLCHT SSTTTRYLPS 121 FNRSRR- AGS-3 (32620 32478) SCR (e 0.909) Exon 1 32620 32478 ( 143 n); score: 0.909 PGS (32620 32478) SGN-U341206+ 3-phase translation of AGS-3 (-strand): . . . . . . 32620 AGGCATAATACATAAATATGCCCTTTAACTTGACTTCAAATCACATTTATGCCCTTCAAC R H N T - I C P L T - L Q I T F M P F N G I I H K Y A L - L D F K S H L C P S T A - Y I N M P F N L T S N H I Y A L Q . . . . . . 32560 TTTGGATGTGCACAAGTAGACACTTAAACTTGTATAAAGTTGAACAAACAGACACACATG F G C A Q V D T - T C I K L N K Q T H M L D V H K - T L K L V - S - T N R H T C L W M C T S R H L N L Y K V E Q T D T H . . . 32500 TCCTACATGTCATCCTACTTGTC S Y M S S Y L P T C H P T C V L H V I L L V Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (+strand): . . . . . . 32478 GACAAGTAGGATGACATGTAGGACATGTGTGTCTGTTTGTTCAACTTTATACAAGTTTAA D K - D D M - D M C V C L F N F I Q V - T S R M T C R T C V S V C S T L Y K F K Q V G - H V G H V C L F V Q L Y T S L . . . . . . 32538 GTGTCTACTTGTGCACATCCAAAGTTGAAGGGCATAAATGTGATTTGAAGTCAAGTTAAA V S T C A H P K L K G I N V I - S Q V K C L L V H I Q S - R A - M - F E V K L K S V Y L C T S K V E G H K C D L K S S - . . . 32598 GGGCATATTTATGTATTATGCCT G H I Y V L C G I F M Y Y A R A Y L C I M P Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (34262 34074,34043 33596) SCR (e 0.704 d 0.000 a 0.000,e 0.795) Exon 1 34262 34074 ( 189 n); score: 0.704 Intron 1 34073 34044 ( 30 n); Pd: 0.000 Pa: 0.000 Exon 2 34043 33596 ( 448 n); score: 0.795 PGS (34262 34074,34043 33596) SGN-U345486- 3-phase translation of AGS-4 (-strand): . . . . . . 34262 ATATCAGGACTGATGTAGAGATTTCTTGCAAGAGTGGTCTTGCCTAAACCACCCATGCCA I S G L M - R F L A R V V L P K P P M P Y Q D - C R D F L Q E W S C L N H P C H I R T D V E I S C K S G L A - T T H A . . . . . . 34202 TAAATGGAGATGACGCTTCGACGAGGCTCTTCTTTGAGAAGTTCAGATAGCAATCTTTCT - M E M T L R R G S S L R S S D S N L S K W R - R F D E A L L - E V Q I A I F L I N G D D A S T R L F F E K F R - Q S F . . . . . . 34142 ACAACATCCTGAAATCCAACAAAAATGTGATCCTGACCATCCACATAGGAGGTGGTTCTC T T S - N P T K M - S - P S T - E V V L Q H P E I Q Q K C D P D H P H R R W F S Y N I L K S N K N V I L T I H I G G G S . : . . . . . 34082 CTCAATGTT : TTACTTGATCCATCTCCTGAATTAGTACTATTGATATTTGTAATACCATAA L N V : L L D P S P E L V L L I F V I P - S M F : Y L I H L L N - Y Y - Y L - Y H K P Q C : F T - S I S - I S T I D I C N T I . . . . . . 33992 GTCTCTCGCTTGCGAGAGATATCCATAATTCGTTGCTTGAGTGATTGTATCTCTTTGGAT V S R L R E I S I I R C L S D C I S L D S L A C E R Y P - F V A - V I V S L W I S L S L A R D I H N S L L E - L Y L F G . . . . . . 33932 ACTTTGTAGAATTTGGTGTCCTTCTTACAGATGCAAGCGCAACCCTTGAGACAACTAGCA T L - N L V S F L Q M Q A Q P L R Q L A L C R I W C P S Y R C K R N P - D N - Q Y F V E F G V L L T D A S A T L E T T S . . . . . . 33872 AATTGATCGTCACCTTTACCAGCCTTGAAGCTGTAAGTCTCTAGTATAGCGACAGCGTCA N - S S P L P A L K L - V S S I A T A S I D R H L Y Q P - S C K S L V - R Q R H K L I V T F T S L E A V S L - Y S D S V . . . . . . 33812 TTTGCAATAGAGTTGATCTCAAACACCCATTGTTGAACTCTTTGATCTCCACATTGCTTT F A I E L I S N T H C - T L - S P H C F L Q - S - S Q T P I V E L F D L H I A L I C N R V D L K H P L L N S L I S T L L . . . . . . 33752 AGTTCTGCATCTCTGAGGAAAGACTGCATGAAGAGTAGATCATTTCTCAGCCATCTAACT S S A S L R K D C M K S R S F L S H L T V L H L - G K T A - R V D H F S A I - L - F C I S E E R L H E E - I I S Q P S N . . . . . . 33692 TCATCTCTGAGATTTGTAAGCAGGGAAACTTCCTGAATGAGGAAATCACCCAGTTTTTTA S S L R F V S R E T S - M R K S P S F L H L - D L - A G K L P E - G N H P V F - F I S E I C K Q G N F L N E E I T Q F F . . . . 33632 ACTGCAAATGACACAAAGGCATCAGCCATCTTCAGGA T A N D T K A S A I F R L Q M T Q R H Q P S S G N C K - H K G I S H L Q Maximal non-overlapping open reading frames (>= 64 codons): none PGL 5 (+ strand): 38322 39846 AGS-1 (38322 38347,38517 39074) SCR (e 0.827 d 0.000 a 0.000,e 0.789) Exon 1 38322 38347 ( 26 n); score: 0.827 Intron 1 38348 38516 ( 169 n); Pd: 0.000 Pa: 0.000 Exon 2 38517 39074 ( 558 n); score: 0.789 PGS (38322 38347,38517 39074) SGN-U345486+ 3-phase translation of AGS-1 (+strand): . . . : . . . 38322 ATTTTTTTTAAAAAAAAAAAAAACAA : TCCTAAAGATGACTGATGCATTTGTGTCATTTGC I F F K K K K N N : P K D D - C I C V I C F F L K K K K T : I L K M T D A F V S F A F F - K K K K Q : S - R - L M H L C H L . . . . . . 38551 AGTTCAAAAATTGGGTGATTTCCTAATACAGGAAATTAACCTACGTTTAAGTCTAAGAGA S S K I G - F P N T G N - P T F K S K R V Q K L G D F L I Q E I N L R L S L R E Q F K N W V I S - Y R K L T Y V - V - E . . . . . . 38611 AGATATACAGTGGCTGCGAAACGAGCTTCTCTTCATGCACTCTTTCCTCAGAGATGCAGA R Y T V A A K R A S L H A L F P Q R C R D I Q W L R N E L L F M H S F L R D A E K I Y S G C E T S F S S C T L S S E M Q . . . . . . 38671 ACTAAAGCAATGTGGAGATCAAAGAGTTCAACAGTGGGTGTTTGAGATCAACTCTATTGC T K A M W R S K S S T V G V - D Q L Y C L K Q C G D Q R V Q Q W V F E I N S I A N - S N V E I K E F N S G C L R S T L L . . . . . . 38731 TAATGACGCTGTTGCTATACTCGAGACTTATAGCTTCAAGGTTGCTAAAGGTAATGACAA - - R C C Y T R D L - L Q G C - R - - Q N D A V A I L E T Y S F K V A K G N D N L M T L L L Y S R L I A S R L L K V M T . . . . . . 38791 TGGATTTTCTAGTCGTCTCAAGGCTTGCGCTTGCATCTGTAGGAGTGAGGCCGGATTCTA W I F - S S Q G L R L H L - E - G R I L G F S S R L K A C A C I C R S E A G F Y M D F L V V S R L A L A S V G V R P D S . . . . . . 38851 CAAAGTTTCCACGGAGATTGAATCACTCAAGCAACGAATCATGGATATATCTCGCAAACG Q S F H G D - I T Q A T N H G Y I S Q T K V S T E I E S L K Q R I M D I S R K R T K F P R R L N H S S N E S W I Y L A N . . . . . . 38911 AGATACTTATGGTATTAGAGATATCAATAATGCAGGAGAAGGTCCAAGTTATCAGTCTGC R Y L W Y - R Y Q - C R R R S K L S V C D T Y G I R D I N N A G E G P S Y Q S A E I L M V L E I S I M Q E K V Q V I S L . . . . . . 38971 CATGGTTAGAACATTGAGGAGAACTACCTCATATGTGGATGACCAGGATTACATTTTTGT H G - N I E E N Y L I C G - P G L H F C M V R T L R R T T S Y V D D Q D Y I F V P W L E H - G E L P H M W M T R I T F L . . . . . 39031 TGGCTTTCAGGATGTTGTACAGACATTGCTAGCTCAACTTCTCA W L S G C C T D I A S S T S G F Q D V V Q T L L A Q L L L A F R M L Y R H C - L N F S Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-5_AGS-1_PPS_1 (38323 38347,38517 39073) (frame '2'; 582 bp, 194 residues) 1 FFLKKKKTIL KMTDAFVSFA VQKLGDFLIQ EINLRLSLRE DIQWLRNELL FMHSFLRDAE 61 LKQCGDQRVQ QWVFEINSIA NDAVAILETY SFKVAKGNDN GFSSRLKACA CICRSEAGFY 121 KVSTEIESLK QRIMDISRKR DTYGIRDINN AGEGPSYQSA MVRTLRRTTS YVDDQDYIFV 181 GFQDVVQTLL AQLL AGS-2 (39126 39846) SCR (e 0.908) Exon 1 39126 39846 ( 721 n); score: 0.908 PGS (39126 39846) SGN-U326781- 3-phase translation of AGS-2 (+strand): . . . . . . 39126 GCAAGACCACTCTTGCAAGAAACCTTTACATCAATCCTAATATAGCCTCTAGCTTCTCTA A R P L L Q E T F T S I L I - P L A S L Q D H S C K K P L H Q S - Y S L - L L Y K T T L A R N L Y I N P N I A S S F S . . . . . . 39186 CACACGCTTGGATATGTGTTTCTCAAGAGTATAACACAATGGATCTTCTTAAAACTATTA H T L G Y V F L K S I T Q W I F L K L L T R L D M C F S R V - H N G S S - N Y Y T H A W I C V S Q E Y N T M D L L K T I . . . . . . 39246 TAAAATCCATCCGAGGTCGCACCAAGGAAACTCTGGATTTGTTGGAAAAGATGGATGAAA - N P S E V A P R K L W I C W K R W M K K I H P R S H Q G N S G F V G K D G - K I K S I R G R T K E T L D L L E K M D E . . . . . . 39306 GAGATCTAGAAAACCACCTTCGTGATCTATTGAAAGAACGCAAATACCTCGTGGTGGTTG E I - K T T F V I Y - K N A N T S W W L R S R K P P S - S I E R T Q I P R G G - R D L E N H L R D L L K E R K Y L V V V . . . . . . 39366 ATGATGTCTGGCAGAGAGAAGCATGGGAGAGTTTGAAAAGAGCATTCCCGGATGGCAAGA M M S G R E K H G R V - K E H S R M A R - C L A E R S M G E F E K S I P G W Q E D D V W Q R E A W E S L K R A F P D G K . . . . . . 39426 ATGGCAGCAGAGTCATTGTTACCACGCGCAAAGAGGATGTCGCTGAAAGAGCAGCCGACA M A A E S L L P R A K R M S L K E Q P T W Q Q S H C Y H A Q R G C R - K S S R Q N G S R V I V T T R K E D V A E R A A D . . . . . . 39486 GAGGTTTTGTTCATAAACTTCGTTTCCTAAGTCAAGAAGAAAGTTGGGATCACTTTCTTA E V L F I N F V S - V K K K V G I T F L R F C S - T S F P K S R R K L G S L S - R G F V H K L R F L S Q E E S W D H F L . . . . . . 39546 GGAAACTACTTGATGTTCGAGCAATGGTTCCAGAAATGGAAAGTCTAGCTAAGGATATGG G N Y L M F E Q W F Q K W K V - L R I W E T T - C S S N G S R N G K S S - G Y G R K L L D V R A M V P E M E S L A K D M . . . . . . 39606 TGGAAAAAGTGTAGAGGCTTACCTCTTGCAATTGTTGTATTGAGCGGACTACTTTCACAT W K K C R G L P L A I V V L S G L L S H G K S V E A Y L L Q L L Y - A D Y F H I V E K V - R L T S C N C C I E R T T F T . . . . . . 39666 AAAAAGGAGCTAGATGAATGGCAAAAGGTGAAAGACCACCTTTGGAAGAACATTAAAGAT K K E L D E W Q K V K D H L W K N I K D K R S - M N G K R - K T T F G R T L K M - K G A R - M A K G E R P P L E E H - R . . . . . . 39726 GACTCTACTGAAATCTCCTACATACTATCATTAAGCTACAACGATTTGTCAACTGCACTC D S T E I S Y I L S L S Y N D L S T A L T L L K S P T Y Y H - A T T I C Q L H S - L Y - N L L H T I I K L Q R F V N C T . . . . . . 39786 AAGCAGTGTTTTCTCTACTTTGGTATTTTTCCAGAAGATCAAGAGCTCGAGGCTGAAAAC K Q C F L Y F G I F P E D Q E L E A E N S S V F S T L V F F Q K I K S S R L K T Q A V F S L L W Y F S R R S R A R G - K . 39846 A Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-5_AGS-2_PPS_1 (39128 39619) (frame '0'; 489 bp, 163 residues) 1 KTTLARNLYI NPNIASSFST HAWICVSQEY NTMDLLKTII KSIRGRTKET LDLLEKMDER 61 DLENHLRDLL KERKYLVVVD DVWQREAWES LKRAFPDGKN GSRVIVTTRK EDVAERAADR 121 GFVHKLRFLS QEESWDHFLR KLLDVRAMVP EMESLAKDMV EKV- >C04HBa0127E11.1+_PGL-5_AGS-2_PPS_2 (39594 39845) (frame '1'; 252 bp, 84 residues) 1 LRIWWKKCRG LPLAIVVLSG LLSHKKELDE WQKVKDHLWK NIKDDSTEIS YILSLSYNDL 61 STALKQCFLY FGIFPEDQEL EAEN 3-phase translation of AGS-2 (-strand): . . . . . . 39846 TGTTTTCAGCCTCGAGCTCTTGATCTTCTGGAAAAATACCAAAGTAGAGAAAACACTGCT C F Q P R A L D L L E K Y Q S R E N T A V F S L E L L I F W K N T K V E K T L L F S A S S S - S S G K I P K - R K H C . . . . . . 39786 TGAGTGCAGTTGACAAATCGTTGTAGCTTAATGATAGTATGTAGGAGATTTCAGTAGAGT - V Q L T N R C S L M I V C R R F Q - S E C S - Q I V V A - - - Y V G D F S R V L S A V D K S L - L N D S M - E I S V E . . . . . . 39726 CATCTTTAATGTTCTTCCAAAGGTGGTCTTTCACCTTTTGCCATTCATCTAGCTCCTTTT H L - C S S K G G L S P F A I H L A P F I F N V L P K V V F H L L P F I - L L F S S L M F F Q R W S F T F C H S S S S F . . . . . . 39666 TATGTGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAGCCTCTACACTTTTTCC Y V K V V R S I Q Q L Q E V S L Y T F S M - K - S A Q Y N N C K R - A S T L F P L C E S S P L N T T I A R G K P L H F F . . . . . . 39606 ACCATATCCTTAGCTAGACTTTCCATTTCTGGAACCATTGCTCGAACATCAAGTAGTTTC T I S L A R L S I S G T I A R T S S S F P Y P - L D F P F L E P L L E H Q V V S H H I L S - T F H F W N H C S N I K - F . . . . . . 39546 CTAAGAAAGTGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCT L R K - S Q L S S - L R K R S L - T K P - E S D P N F L L D L G N E V Y E Q N L P K K V I P T F F L T - E T K F M N K T . . . . . . 39486 CTGTCGGCTGCTCTTTCAGCGACATCCTCTTTGCGCGTGGTAACAATGACTCTGCTGCCA L S A A L S A T S S L R V V T M T L L P C R L L F Q R H P L C A W - Q - L C C H S V G C S F S D I L F A R G N N D S A A . . . . . . 39426 TTCTTGCCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTCTGCCAGACATCA F L P S G N A L F K L S H A S L C Q T S S C H P G M L F S N S P M L L S A R H H I L A I R E C S F Q T L P C F S L P D I . . . . . . 39366 TCAACCACCACGAGGTATTTGCGTTCTTTCAATAGATCACGAAGGTGGTTTTCTAGATCT S T T T R Y L R S F N R S R R W F S R S Q P P R G I C V L S I D H E G G F L D L I N H H E V F A F F Q - I T K V V F - I . . . . . . 39306 CTTTCATCCATCTTTTCCAACAAATCCAGAGTTTCCTTGGTGCGACCTCGGATGGATTTT L S S I F S N K S R V S L V R P R M D F F H P S F P T N P E F P W C D L G W I L S F I H L F Q Q I Q S F L G A T S D G F . . . . . . 39246 ATAATAGTTTTAAGAAGATCCATTGTGTTATACTCTTGAGAAACACATATCCAAGCGTGT I I V L R R S I V L Y S - E T H I Q A C - - F - E D P L C Y T L E K H I S K R V Y N S F K K I H C V I L L R N T Y P S V . . . . . . 39186 GTAGAGAAGCTAGAGGCTATATTAGGATTGATGTAAAGGTTTCTTGCAAGAGTGGTCTTG V E K L E A I L G L M - R F L A R V V L - R S - R L Y - D - C K G F L Q E W S C C R E A R G Y I R I D V K V S C K S G L . 39126 C Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-5_AGS-2_PPS_1 (39495 39208) (frame '1'; 285 bp, 95 residues) 1 TKPLSAALSA TSSLRVVTMT LLPFLPSGNA LFKLSHASLC QTSSTTTRYL RSFNRSRRWF 61 SRSLSSIFSN KSRVSLVRPR MDFIIVLRRS IVLYS- PGL 6 (- strand): 45523 42793 AGS-1 (45523 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 42793) SCR (e 1.000 d 0.908 a 0.999,e 1.000 d 0.750 a 0.977,e 1.000 d 0.998 a 0.620,e 1.000 d 0.998 a 0.950,e 1.000 d 0.999 a 0.992,e 1.000) Exon 1 45523 45363 ( 161 n); score: 1.000 Intron 1 45362 44820 ( 543 n); Pd: 0.908 Pa: 0.999 Exon 2 44819 44754 ( 66 n); score: 1.000 Intron 2 44753 44336 ( 418 n); Pd: 0.750 Pa: 0.977 Exon 3 44335 44261 ( 75 n); score: 1.000 Intron 3 44260 43812 ( 449 n); Pd: 0.998 Pa: 0.620 Exon 4 43811 43688 ( 124 n); score: 1.000 Intron 4 43687 43602 ( 86 n); Pd: 0.998 Pa: 0.950 Exon 5 43601 43479 ( 123 n); score: 1.000 Intron 5 43478 43326 ( 153 n); Pd: 0.999 Pa: 0.992 Exon 6 43325 42793 ( 533 n); score: 1.000 PGS (45523 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 42793) SGN-U316159+ PGS (45499 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 42836) SGN-U316160+ 3-phase translation of AGS-1 (-strand): . . . . . . 45523 TTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCT L G F M K M Q R C C S S A I G K R W F S - G L - K C R G A V H L R - V N D G F L R V Y E N A E V L F I C D R - T M V F . . . . . . 45463 TCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTA S F N N D K I V A S V L F E R L P V V V H S T M I K L W L Q C S L K D Y R - W Y F I Q Q - - N C G F S A L - K I T G S G . . . . . : . 45403 CCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC : GTTTCGTTGGAGGCAGCAA P K I D P T V Y A F Q E F S : F R W R Q Q P K S I L L Y M L F K N F : R F V G G S N T Q N R S Y C I C F S R I F : V S L E A A . . . . . : . 44800 TATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG : GGGAAAAGGTGAT Y R R E Y P E S F L K K S D T R : G K G D I G E S I Q K V F - R S L I P : G E K V I I S A R V S R K F S E E V - Y Q : G K R - . . . . . . 44322 TATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAA Y Q I D Y K P A P R I S E A D K T N D Q I K L I I N Q L L E S Q K Q I R L M I K L S N - L - T S S S N L R S R - D - - S . : . . . . . 44262 AG : GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAA R : S L Q R A L D K R L Y L L V H G T T Q : G H Y S E H - T R D S I F - S M V P H K K : V I T A S T R Q E T L S S S P W Y H T . . . . . . 43753 GGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTG G S G K P V W H F P E K V Y E S E E N L V V E S L S G I S L K K F M S L K R I C R - W K A C L A F P - K S L - V - R E F . : . . . . . 43693 CGCAAG : TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTT R K : C A E S A L E S F I G D L S H T Y F A S : V L S L P - N L S L E I F H I H I L A Q : V C - V C L R I F H W R S F T Y I F . . . . . . 43547 GTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCT V G N A P M G H M V M Q P T E D K K I P L E M P L W V I W S C N P L K T R K S L C W K C P Y G S Y G H A T H - R Q E N P . : . . . . . 43487 TCAATCAAG : CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGG S I K : R F F F K S Q V I A A N K F D I R Q S S : A S S S N P K L L Q P T N L I L G F N Q : A L L L Q I P S Y C S Q Q I - Y - . . . . . . 43274 AAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAA K C D D F V W V T K D E L L E Y F P E Q N V M I L S G - P K M N C W N T F P S K E M - - F C L G D Q R - T V G I L S R A . . . . . . 43214 GCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCT A E F L N K M I I S - R - F L L K L Q A L N S - T R - S S A D V S F C S N F R L S - I P E Q D D H Q L T L V S A Q T S G . . . . . . 43154 TCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATG S - D S G N S F D L K N P F L P A N A M R R I A E I V L I - K I H F F P Q M Q W F V G - R K - F - S E K S I S S R K C N . . . . . . 43094 GGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCAT G L D C W R L I F M S R Q S D - H A I H A W T A G D - F L C L D S L T S M P F I G L G L L E T D F Y V S T V - L A C H S . . . . . . 43034 CAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCT Q V L - N F E H R I P K L - - P S A S A K S C R I L N I G Y L N Y D S L L P Q L S S P V E F - T - D T - I M I A F C L S . . . . . . 42974 ATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAG I T N P L C E K L C - K L - N S H E F - S P I L F V R S Y A K N S E I V M N F S Y H Q S S L - E A M L K T L K - S - I L . . . . . . 42914 TATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAA Y E Y A F V D A R F H L A S - N K Q N K M N M L L - M H D F I S R H K I N K T N V - I C F C R C T I S S R V I K - T K Q . . . . . . 42854 TTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTTTCATAGCTGCATTGTGCATAGAG L H V A A L T S C E L C F I A A L C I E Y M L Q P - R V A S F V S - L H C A - R I T C C S L N E L R A L F H S C I V H R . 42794 AA E Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-6_AGS-1_PPS_1 (45523 45363,44819 44754,44335 44261,43811 43688,43601 43479,43325 43182) (frame '1'; 690 bp, 230 residues) 1 LGFMKMQRCC SSAIGKRWFS SFNNDKIVAS VLFERLPVVV PKIDPTVYAF QEFSFRWRQQ 61 YRREYPESFL KKSDTRGKGD YQIDYKPAPR ISEADKTNDQ RSLQRALDKR LYLLVHGTTQ 121 GSGKPVWHFP EKVYESEENL RKCAESALES FIGDLSHTYF VGNAPMGHMV MQPTEDKKIP 181 SIKRFFFKSQ VIAANKFDIR KCDDFVWVTK DELLEYFPEQ AEFLNKMIIS - AGS-2 (45512 44754,44335 44282) SCR (e 0.872 d 0.750 a 0.977,e 0.824) Exon 1 45512 44754 ( 759 n); score: 0.872 Intron 1 44753 44336 ( 418 n); Pd: 0.750 Pa: 0.977 Exon 2 44335 44282 ( 54 n); score: 0.824 PGS (45512 44754,44335 44282) SGN-U335513+ PGS (45512 44796) SGN-U335512+ 3-phase translation of AGS-2 (-strand): . . . . . . 45512 GAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAA E N A E V L F I C D R - T M V F F I Q Q K M Q R C C S S A I G K R W F S S F N N K C R G A V H L R - V N D G F L H S T . . . . . . 45452 TGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGA - - N C G F S A L - K I T G S G T Q N R D K I V A S V L F E R L P V V V P K I D M I K L W L Q C S L K D Y R - W Y P K S . . . . . . 45392 TCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTG S Y C I C F S R I F V S F F F F S V Q L P T V Y A F Q E F S - V F S F F L F N C I L L Y M L F K N F R K F F L F F C S I . . . . . . 45332 TTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTT L H E I E V - S I P F V I Q L Q - F T F C T K S K C N Q S L L - S N Y N D L L L V A R N R S V I N P F C N P I T M I Y F . . . . . . 45272 AGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTT R A I I A G S Y N R M I K T F T S V D F E R - L L V R I I E - S K H L L V L I F - S D N C W F V - - N D Q N I Y - C - F . . . . . . 45212 TTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGT F F R F S E T V L V N - G L R G T L I C F F A F Q K L C W L I R D - G V L - Y V F F S L F R N C A G - L G I K G Y F D M . . . . . . 45152 TTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTAT L L E K N S A K K Q - F Y A L V R S N Y C L R K I V L K N N N F M P - S G Q I M F A - E K - C - K T I I L C L S Q V K L . . . . . . 45092 GAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTT E S S L F C K F D E V N L R K K I V S F N L R Y F V S L M K - I Y E R K - F L L - I F A I L - V - - S K S T K E N S F F . . . . . . 45032 GTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAAT V Q N F A V V S N A - E I M C N E V E N S K I L Q W F L M L R R - C V M K L R I C P K F C S G F - C L G D N V - - S - E . . . . . . 44972 AATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCAT N E V I E W V R R R K - E - K R A K V H M R L - N G L E G E N E N K K E Q R F M - - G Y R M G - K E K M R I K K S K G S . . . . . . 44912 GAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGA E Q E L A N D N V D D C L T - L V F S - N K S W R M T M - M I V - R N W C L V D - T R V G E - Q C R - L F N V I G V - L . . . . . . 44852 TTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCG L Q - F Y D - F L L - V S L E A A I S A C S N F M I N F F Y R F R W R Q Q Y R R I A V I L - L I S F I G F V G G S N I G . . . . : . . 44792 AGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG : GGGAAAAGGTGATTATCAAAT R V S R K F S E E V - Y Q : G K R - L S N E Y P E S F L K K S D T R : G K G D Y Q I E S I Q K V F - R S L I P : G E K V I I K . . . . 44314 TGATTATAAACCAGCTCCTCGAATCTCAGAAGC - L - T S S S N L R S D Y K P A P R I S E L I I N Q L L E S Q K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 7 (+ strand): 47789 48513 AGS-1 (47789 48513) SCR (e 0.971) Exon 1 47789 48513 ( 725 n); score: 0.971 PGS (47789 48513) SGN-U326781- 3-phase translation of AGS-1 (+strand): . . . . . . 47789 GCAAGACCACTCTTGCAAGAAACCTCTACAAAAATCCTAATATATCCTCTCGCTTCCCTA A R P L L Q E T S T K I L I Y P L A S L Q D H S C K K P L Q K S - Y I L S L P Y K T T L A R N L Y K N P N I S S R F P . . . . . . 47849 CACACGCTTGGATATGTGTTTCTCAAGAGTACAACACAATGGATCTTCTTAAGACTATCA H T L G Y V F L K S T T Q W I F L R L S T R L D M C F S R V Q H N G S S - D Y H T H A W I C V S Q E Y N T M D L L K T I . . . . . . 47909 TAAAATCCATCCAAGGTCGCACCATGGGAACTCTAGGATTGTTGGAAAAGATGGATGAAA - N P S K V A P W E L - D C W K R W M K K I H P R S H H G N S R I V G K D G - K I K S I Q G R T M G T L G L L E K M D E . . . . . . 47969 GAGATCTAGAAAACCACCTTCGTGATCTATTGAAAGAACGCAAATACCTTGTGGTGGTTG E I - K T T F V I Y - K N A N T L W W L R S R K P P S - S I E R T Q I P C G G - R D L E N H L R D L L K E R K Y L V V V . . . . . . 48029 ATGATGTCTGGCAAAGAGAAGCATGGGAGAGTTTGAAAAGAGCATTCCCGGATGACAAGA M M S G K E K H G R V - K E H S R M T R - C L A K R S M G E F E K S I P G - Q E D D V W Q R E A W E S L K R A F P D D K . . . . . . 48089 ATGGCAGCAGAGTCATTATTACCACGCGCAAAGAGGATATCGCTGAAAGAGCAGCCGACA M A A E S L L P R A K R I S L K E Q P T W Q Q S H Y Y H A Q R G Y R - K S S R Q N G S R V I I T T R K E D I A E R A A D . . . . . . 48149 GAGGTTTTGTTCATAAACTTCGTTTCCTAAGTCAAGAAGAAAGTTGGGATCTCTTTCTTA E V L F I N F V S - V K K K V G I S F L R F C S - T S F P K S R R K L G S L S - R G F V H K L R F L S Q E E S W D L F L . . . . . . 48209 GGAAACTACTTGATGTTCGAGCAATGGTTGCAGAAATGGAAAGTCTAGCTAAGGATATGG G N Y L M F E Q W L Q K W K V - L R I W E T T - C S S N G C R N G K S S - G Y G R K L L D V R A M V A E M E S L A K D M . . . . . . 48269 TGGAAAAGTGTAGAGGTTTACCTCTTGCAATTGTTGTATTGAGCGGACTACTTTCGCATA W K S V E V Y L L Q L L Y - A D Y F R I G K V - R F T S C N C C I E R T T F A - V E K C R G L P L A I V V L S G L L S H . . . . . . 48329 AAAAGGATCTAGATGAATGGCAAAAGGTGAAAGATCACCTTTGGAAGAGCATTAAAGAAG K R I - M N G K R - K I T F G R A L K K K G S R - M A K G E R S P L E E H - R R K K D L D E W Q K V K D H L W K S I K E . . . . . . 48389 ATAAATCTGTTGAAATCTCCAACATACTATCACTAAGCTACAATGATTTGTCAATTGAGC I N L L K S P T Y Y H - A T M I C Q L S - I C - N L Q H T I T K L Q - F V N - A D K S V E I S N I L S L S Y N D L S I E . . . . . . 48449 TCAAGCAGTGTTTTCTCTACTTTGGTATGTTTCCAGAAGATCGAGTGGTCAAGGCTGAAA S S S V F S T L V C F Q K I E W S R L K Q A V F S L L W Y V S R R S S G Q G - K L K Q C F L Y F G M F P E D R V V K A E . 48509 ACACA T H N T Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-7_AGS-1_PPS_1 (47791 48513) (frame '0'; 723 bp, 241 residues) 1 KTTLARNLYK NPNISSRFPT HAWICVSQEY NTMDLLKTII KSIQGRTMGT LGLLEKMDER 61 DLENHLRDLL KERKYLVVVD DVWQREAWES LKRAFPDDKN GSRVIITTRK EDIAERAADR 121 GFVHKLRFLS QEESWDLFLR KLLDVRAMVA EMESLAKDMV EKCRGLPLAI VVLSGLLSHK 181 KDLDEWQKVK DHLWKSIKED KSVEISNILS LSYNDLSIEL KQCFLYFGMF PEDRVVKAEN 241 T 3-phase translation of AGS-1 (-strand): . . . . . . 48513 TGTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTG C V F S L D H S I F W K H T K V E K T L V F S A L T T R S S G N I P K - R K H C C F Q P - P L D L L E T Y Q S R E N T . . . . . . 48453 CTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGA L E L N - Q I I V A - - - Y V G D F N R L S S I D K S L - L S D S M L E I S T D A - A Q L T N H C S L V I V C W R F Q Q . . . . . . 48393 TTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATC F I F F N A L P K V I F H L L P F I - I L S S L M L F Q R - S F T F C H S S R S I Y L L - C S S K G D L S P F A I H L D . . . . . . 48333 CTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTT L F M R K - S A Q Y N N C K R - T S T L F L C E S S P L N T T I A R G K P L H F P F Y A K V V R S I Q Q L Q E V N L Y T . . . . . . 48273 TTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAG F H H I L S - T F H F C N H C S N I K - S T I S L A R L S I S A T I A R T S S S F P P Y P - L D F P F L Q P L L E H Q V . . . . . . 48213 TTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAA F P K K E I P T F F L T - E T K F M N K F L R K R S Q L S S - L R K R S L - T K V S - E R D P N F L L D L G N E V Y E Q . . . . . . 48153 ACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCT T S V G C S F S D I L F A R G N N D S A P L S A A L S A I S S L R V V I M T L L N L C R L L F Q R Y P L C A W - - - L C . . . . . . 48093 GCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTTTGCCAGAC A I L V I R E C S F Q T L P C F S L P D P F L S S G N A L F K L S H A S L C Q T C H S C H P G M L F S N S P M L L F A R . . . . . . 48033 ATCATCAACCACCACAAGGTATTTGCGTTCTTTCAATAGATCACGAAGGTGGTTTTCTAG I I N H H K V F A F F Q - I T K V V F - S S T T T R Y L R S F N R S R R W F S R H H Q P P Q G I C V L S I D H E G G F L . . . . . . 47973 ATCTCTTTCATCCATCTTTTCCAACAATCCTAGAGTTCCCATGGTGCGACCTTGGATGGA I S F I H L F Q Q S - S S H G A T L D G S L S S I F S N N P R V P M V R P W M D D L F H P S F P T I L E F P W C D L G W . . . . . . 47913 TTTTATGATAGTCTTAAGAAGATCCATTGTGTTGTACTCTTGAGAAACACATATCCAAGC F Y D S L K K I H C V V L L R N T Y P S F M I V L R R S I V L Y S - E T H I Q A I L - - S - E D P L C C T L E K H I S K . . . . . . 47853 GTGTGTAGGGAAGCGAGAGGATATATTAGGATTTTTGTAGAGGTTTCTTGCAAGAGTGGT V C R E A R G Y I R I F V E V S C K S G C V G K R E D I L G F L - R F L A R V V R V - G S E R I Y - D F C R G F L Q E W . 47793 CTTGC L L S C Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-7_AGS-1_PPS_1 (48158 47871) (frame '2'; 285 bp, 95 residues) 1 TKPLSAALSA ISSLRVVIMT LLPFLSSGNA LFKLSHASLC QTSSTTTRYL RSFNRSRRWF 61 SRSLSSIFSN NPRVPMVRPW MDFMIVLRRS IVLYS- PGL 8 (+ strand): 52342 53059 AGS-1 (52342 53059) SCR (e 0.829) Exon 1 52342 53059 ( 718 n); score: 0.829 PGS (52342 53059) SGN-U326781- 3-phase translation of AGS-1 (+strand): . . . . . . 52342 GCACGACAACTCTTGCGAGAAACCTATACATCAGTTCTACTATAATCTCTAGCTTCCCTA A R Q L L R E T Y T S V L L - S L A S L H D N S C E K P I H Q F Y Y N L - L P Y T T T L A R N L Y I S S T I I S S F P . . . . . . 52402 CACGTGCTTGGATATGTGTTTCTCAAGAGTACAACACCATGGATCTCCTTAGGAATATCA H V L G Y V F L K S T T P W I S L G I S T C L D M C F S R V Q H H G S P - E Y H T R A W I C V S Q E Y N T M D L L R N I . . . . . . 52462 TAAAATCCATCCAAGGTTGCACCAAGGAAACTCTAGATTTGTTGGAAAAGATGACAGAGA - N P S K V A P R K L - I C W K R - Q R K I H P R L H Q G N S R F V G K D D R D I K S I Q G C T K E T L D L L E K M T E . . . . . . 52522 TCGATCTAGAAATTTACCTTCGTGATCTTTTAAAAGAACCCAAATACCTTGTGGTGGTCG S I - K F T F V I F - K N P N T L W W S R S R N L P S - S F K R T Q I P C G G R I D L E I Y L R D L L K E P K Y L V V V . . . . . . 52582 ATGATTTATGGCATAGAGAAGCATGGGAAAGTTTGAAACGGGCATTTCCAGATAGCAAGA M I Y G I E K H G K V - N G H F Q I A R - F M A - R S M G K F E T G I S R - Q E D D L W H R E A W E S L K R A F P D S K . . . . . . 52642 AGGCAGCAGAGTTATTATTACTACACGCAAAGAGGATGTCGCTGAAAGAGCAGATAACAA R Q Q S Y Y Y Y T Q R G C R - K S R - Q G S R V I I T T R K E D V A E R A D N K K A A E L L L L H A K R M S L K E Q I T . . . . . . 52702 AGGTTTTGTCTATAGACTTCGCTTCCTGAGCCAAGAAGAAAGTTGGGATCTCTTTTGTAG R F C L - T S L P E P R R K L G S L L - G F V Y R L R F L S Q E E S W D L F C R K V L S I D F A S - A K K K V G I S F V . . . . . . 52762 GAAACTACTTGATGTTCGGGCAATGGTCTCAGCAATGGAAAGGCTAGCAAAGGAAATGGT E T T - C S G N G L S N G K A S K G N G K L L D V R A M V S A M E R L A K E M V G N Y L M F G Q W S Q Q W K G - Q R K W . . . . . . 52822 GGACAAGTGTGGAGGTTTACCTCTTGCAGTTGTTGTATTAAGAGGACTAATTTCACATAA G Q V W R F T S C S C C I K R T N F T - D K C G G L P L A V V V L R G L I S H K W T S V E V Y L L Q L L Y - E D - F H I . . . . . . 52882 AAGGGGGCTAGAAGAATGGGAAAAGGTGAAGTACCACCTTTGGCAAAACATTGAAGACGA K G A R R M G K G E V P P L A K H - R R R G L E E W E K V K Y H L W Q N I E D D K G G - K N G K R - S T T F G K T L K T . . . . . . 52942 CTCTATTGAAGTCTCCTGCATACTATCATTGAGCTACAACGATTTGCCAACTGTGCTCAA L Y - S L L H T I I E L Q R F A N C A Q S I E V S C I L S L S Y N D L P T V L K T L L K S P A Y Y H - A T T I C Q L C S . . . . . . 53002 GCAGTGTTTCCTGTACTTGATATTTTTCCAGAAGATCATGTGGTCCATGTTGATCACA A V F P V L D I F P E D H V V H V D H Q C F L Y L I F F Q K I M W S M L I T S S V S C T - Y F S R R S C G P C - S Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-8_AGS-1_PPS_1 (52637 53059) (frame '2'; 423 bp, 141 residues) 1 QEGSRVIITT RKEDVAERAD NKGFVYRLRF LSQEESWDLF CRKLLDVRAM VSAMERLAKE 61 MVDKCGGLPL AVVVLRGLIS HKRGLEEWEK VKYHLWQNIE DDSIEVSCIL SLSYNDLPTV 121 LKQCFLYLIF FQKIMWSMLI T 3-phase translation of AGS-1 (-strand): . . . . . . 53059 TGTGATCAACATGGACCACATGATCTTCTGGAAAAATATCAAGTACAGGAAACACTGCTT C D Q H G P H D L L E K Y Q V Q E T L L V I N M D H M I F W K N I K Y R K H C L - S T W T T - S S G K I S S T G N T A . . . . . . 52999 GAGCACAGTTGGCAAATCGTTGTAGCTCAATGATAGTATGCAGGAGACTTCAATAGAGTC E H S W Q I V V A Q - - Y A G D F N R V S T V G K S L - L N D S M Q E T S I E S - A Q L A N R C S S M I V C R R L Q - S . . . . . . 52939 GTCTTCAATGTTTTGCCAAAGGTGGTACTTCACCTTTTCCCATTCTTCTAGCCCCCTTTT V F N V L P K V V L H L F P F F - P P F S S M F C Q R W Y F T F S H S S S P L L R L Q C F A K G G T S P F P I L L A P F . . . . . . 52879 ATGTGAAATTAGTCCTCTTAATACAACAACTGCAAGAGGTAAACCTCCACACTTGTCCAC M - N - S S - Y N N C K R - T S T L V H C E I S P L N T T T A R G K P P H L S T Y V K L V L L I Q Q L Q E V N L H T C P . . . . . . 52819 CATTTCCTTTGCTAGCCTTTCCATTGCTGAGACCATTGCCCGAACATCAAGTAGTTTCCT H F L C - P F H C - D H C P N I K - F P I S F A S L S I A E T I A R T S S S F L P F P L L A F P L L R P L P E H Q V V S . . . . . . 52759 ACAAAAGAGATCCCAACTTTCTTCTTGGCTCAGGAAGCGAAGTCTATAGACAAAACCTTT T K E I P T F F L A Q E A K S I D K T F Q K R S Q L S S W L R K R S L - T K P L Y K R D P N F L L G S G S E V Y R Q N L . . . . . . 52699 GTTATCTGCTCTTTCAGCGACATCCTCTTTGCGTGTAGTAATAATAACTCTGCTGCCTTC V I C S F S D I L F A C S N N N S A A F L S A L S A T S S L R V V I I T L L P S C Y L L F Q R H P L C V - - - - L C C L . . . . . . 52639 TTGCTATCTGGAAATGCCCGTTTCAAACTTTCCCATGCTTCTCTATGCCATAAATCATCG L L S G N A R F K L S H A S L C H K S S C Y L E M P V S N F P M L L Y A I N H R L A I W K C P F Q T F P C F S M P - I I . . . . . . 52579 ACCACCACAAGGTATTTGGGTTCTTTTAAAAGATCACGAAGGTAAATTTCTAGATCGATC T T T R Y L G S F K R S R R - I S R S I P P Q G I W V L L K D H E G K F L D R S D H H K V F G F F - K I T K V N F - I D . . . . . . 52519 TCTGTCATCTTTTCCAACAAATCTAGAGTTTCCTTGGTGCAACCTTGGATGGATTTTATG S V I F S N K S R V S L V Q P W M D F M L S S F P T N L E F P W C N L G W I L - L C H L F Q Q I - S F L G A T L D G F Y . . . . . . 52459 ATATTCCTAAGGAGATCCATGGTGTTGTACTCTTGAGAAACACATATCCAAGCACGTGTA I F L R R S M V L Y S - E T H I Q A R V Y S - G D P W C C T L E K H I S K H V - D I P K E I H G V V L L R N T Y P S T C . . . . . . 52399 GGGAAGCTAGAGATTATAGTAGAACTGATGTATAGGTTTCTCGCAAGAGTTGTCGTGC G K L E I I V E L M Y R F L A R V V V G S - R L - - N - C I G F S Q E L S C R E A R D Y S R T D V - V S R K S C R Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-8_AGS-1_PPS_1 (52943 52662) (frame '0'; 279 bp, 93 residues) 1 SRLQCFAKGG TSPFPILLAP FYVKLVLLIQ QLQEVNLHTC PPFPLLAFPL LRPLPEHQVV 61 SYKRDPNFLL GSGSEVYRQN LCYLLFQRHP LCV- >C04HBa0127E11.1-_PGL-8_AGS-1_PPS_2 (52974 52711) (frame '2'; 261 bp, 87 residues) 1 LNDSMQETSI ESSSMFCQRW YFTFSHSSSP LLCEISPLNT TTARGKPPHL STISFASLSI 61 AETIARTSSS FLQKRSQLSS WLRKRSL- PGL 9 (- strand): 56519 56250 AGS-1 (56519 56250) SCR (e 0.844) Exon 1 56519 56250 ( 270 n); score: 0.844 PGS (56519 56250) SGN-U336521+ PGS (56489 56263) SGN-U316620- 3-phase translation of AGS-1 (-strand): . . . . . . 56519 TAAAAATACAGAAATAAGTGACTCCCTCAGTTTCAAAAAGAATGACCTAGTTTGACTTGG - K Y R N K - L P Q F Q K E - P S L T W K N T E I S D S L S F K K N D L V - L G K I Q K - V T P S V S K R M T - F D L . . . . . . 56459 AACGGAGTTTAAGAAAAGAAAGAAGACCTTTTTATCTTGTGATTCTAAATTAAAATTATG N G V - E K K E D L F I L - F - I K I M T E F K K R K K T F L S C D S K L K L C E R S L R K E R R P F Y L V I L N - N Y . . . . . . 56399 TCAAATGTACCAAAATGTCATTTAATCTTGTGGTCTTAAACATGCCACGTGGAAAGTTAA S N V P K C H L I L W S - T C H V E S - Q M Y Q N V I - S C G L K H A T W K V K V K C T K M S F N L V V L N M P R G K L . . . . . . 56339 AGTTAAAGTGTTGCCAAAAAAGGAAAGGGTCATTCTTTTTGAAACAGACTAAAAAGAAAA S - S V A K K G K G H S F - N R L K R K V K V L P K K E R V I L F E T D - K E N K L K C C Q K R K G S F F L K Q T K K K . . . 56279 TAGAGTTATTCTTTTTGAAATGGAGGGAGT - S Y S F - N G G S R V I L F E M E G I E L F F L K W R E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 56250 ACTCCCTCCATTTCAAAAAGAATAACTCTATTTTCTTTTTAGTCTGTTTCAAAAAGAATG T P S I S K R I T L F S F - S V S K R M L P P F Q K E - L Y F L F S L F Q K E - S L H F K K N N S I F F L V C F K K N . . . . . . 56310 ACCCTTTCCTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGGCATGTTTAAGACCA T L S F F G N T L T L T F H V A C L R P P F P F L A T L - L - L S T W H V - D H D P F L F W Q H F N F N F P R G M F K T . . . . . . 56370 CAAGATTAAATGACATTTTGGTACATTTGACATAATTTTAATTTAGAATCACAAGATAAA Q D - M T F W Y I - H N F N L E S Q D K K I K - H F G T F D I I L I - N H K I K T R L N D I L V H L T - F - F R I T R - . . . . . . 56430 AAGGTCTTCTTTCTTTTCTTAAACTCCGTTCCAAGTCAAACTAGGTCATTCTTTTTGAAA K V F F L F L N S V P S Q T R S F F L K R S S F F S - T P F Q V K L G H S F - N K G L L S F L K L R S K S N - V I L F E . . . 56490 CTGAGGGAGTCACTTATTTCTGTATTTTTA L R E S L I S V F L - G S H L F L Y F T E G V T Y F C I F Maximal non-overlapping open reading frames (>= 64 codons): none PGL 10 (- strand): 60416 57019 AGS-1 (60416 60382,57679 57019) SCR (e 1.000 d 1.000 a 0.947,e 1.000) Exon 1 60416 60382 ( 35 n); score: 1.000 Intron 1 60381 57680 (2702 n); Pd: 1.000 Pa: 0.947 Exon 2 57679 57019 ( 661 n); score: 1.000 PGS (60416 60382,57679 57019) SGN-U327528+ 3-phase translation of AGS-1 (-strand): . . . . : . . 60416 GTCGCCGATAATCAGTGGATTTTCACCTATTTGAG : GGTGTACTTTGAGGAAGGTGAATGC V A D N Q W I F T Y L R : V Y F E E G E C S P I I S G F S P I - : G C T L R K V N A R R - S V D F H L F E : G V L - G R - M . . . . . . 57654 TCAAATTCGTCATTCTTTTTAGTGGAAAAATACATCTCGAGATGATGGAAATTGAAATTG S N S S F F L V E K Y I S R - W K L K L Q I R H S F - W K N T S R D D G N - N C L K F V I L F S G K I H L E M M E I E I . . . . . . 57594 CGTCCCTTTACCACTACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAAC R P F T T T Y K L V K L I L S C F R Y N V P L P L R I S W S S - F - V V F G T T A S L Y H Y V - A G Q A D F E L F S V Q . . . . . . 57534 TTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACA F - L E Y S E C P P F S R L S S F Y S T F S L N I L S V L L S L D - V A F T L Q L L A - I F - V S S F L S T E - L L L Y . . . . . . 57474 AGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCG R N S S A R V V L Q K K S N Q N N G - S E I H L L E - F C K R K A I K I M D D R K K F I C - S S S A K E K Q S K - W M I . . . . . . 57414 GGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGC G C S - Q G W N K E V A S V D V C Y I C V V L D K G G T R K L P Q W M F A T S A G L F L T R V E Q G S C L S G C L L H L . . . . . . 57354 TGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGA C - S S K G K S Q N - - S R Q - - Y Y R A D Q V K E K A K T D K V D N N N T T E L L I K - R K K P K L I K - T I I I L Q . . . . . . 57294 GAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATT E G D C H S E T E K - K D - G - K G N I K E I V T Q K Q K N R R I K D K K E T F R R R L S L R N R K I E G L R I K R K H . . . . . . 57234 CACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAA H - G V V H S A S N M P N N K K K Q K K T E E S S T Q L P I C Q T T K R S R R K S L R S R P L S F Q Y A K Q Q K E A E E . . . . . . 57174 ATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGA I K P T K - L L - - - K H F N G E - M - L N L P N D Y C N D E S T S M G S E C D N - T Y Q M I I V M M K A L Q W G V N V . . . . . . 57114 CAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAAC Q Q A S K W - W R G S Y V E E T E T E N S K Q A S G D G E V P M L R R Q K Q K T T A S K Q V V M E R F L C - G D R N R K . . . . 57054 GAAGAATTCCAAGACTGAGAGAGTTGCTGAGATGGA E E F Q D - E S C - D G K N S K T E R V A E M R R I P R L R E L L R W Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-10_AGS-1_PPS_1 (57452 57021) (frame '2'; 432 bp, 144 residues) 1 FCKRKAIKIM DDRVVLDKGG TRKLPQWMFA TSAADQVKEK AKTDKVDNNN TTEKEIVTQK 61 QKNRRIKDKK ETFTEESSTQ LPICQTTKRS RRKLNLPNDY CNDESTSMGS ECDSKQASGD 121 GEVPMLRRQK QKTKNSKTER VAEM PGL 11 (+ strand): 63536 67974 AGS-1 (63536 64083,67722 67974) SCR (e 1.000 d 0.995 a 1.000,e 1.000) Exon 1 63536 64083 ( 548 n); score: 1.000 Intron 1 64084 67721 (3638 n); Pd: 0.995 Pa: 1.000 Exon 2 67722 67974 ( 253 n); score: 1.000 PGS (63536 64083,67722 67974) SGN-U329894+ 3-phase translation of AGS-1 (+strand): . . . . . . 63536 TCGTTATCGAGGGGGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACT S L S R G V T G V V V S K C R R I M G T R Y R G G - R G - W S P N A G E L W G L V I E G G N G G S G L Q M P A N Y G D . . . . . . 63596 ATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACC I S L D R G L S N - S R I W Q K M I Q T F H W T G V - A I D P E F G R K - S K P Y F I G P G F E Q L I Q N L A E N D P N . . . . . . 63656 GATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTG D M G L L R R R E Q R W R G S L P S K L I W D S S G V E S S G G G A P Y H Q S - R Y G T P P A S R A A V E G L P T I K V . . . . . . 63716 ATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGA M R N - C V L N W H S V L F V R M I L R - G I D A F - T G T V C C L - G - F - D D E E L M R S E L A Q C A V C K D D F E . . . . . . 63776 TGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATAC W G Q M - Y R C L V S M F I I R I V S Y G V R C D T D A L - A C L S - G L Y H T M G S D V I Q M P C K H V Y H K D C I I . . . . . . 63836 CGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGC R G L S C T V L A R F V A M S C Q R M S V A - V A Q F L P G L S L - V A N G - A P W L E L H S S C P V C R Y E L P T D E . . . . . . 63896 CTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTT L R M R T G K E T M M G T R A G M V L L - E - E Q A K R Q - W G L E R G W F C F P E N E N R Q R D N D G D S S G D G S A . . . . . . 63956 CTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAA L E V G D Q G E G L L Q Y H C H G L W E W K W G I R E K V Y Y N I I A M A F G K S G S G G S G R R F T T I S L P W P L G . . . . . . 64016 GCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGT A L E H H L A R D D P S L V G S G T G S L W S I I - P G M I R V S W A A E Q G V S F G A S S S Q G - S E S R G Q R N R E . : . . . . . 64076 CTAATTAG : GTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTG L I R : W Y P C L Q V V S W M T K L E E L - L : G G I L A C R L Y H G - Q S W R S C S N - : V V S L L A G C I M D D K V G G V . . . . . . 67774 TTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTAGGTTTCATCTCTTAAAACA L G R - L E N A T K V K D - V S S L K T W V D N - K M L Q R - R I R F H L L K H V G - I I R K C Y K G K G L G F I S - N . . . . . . 67834 TAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTG - I Q G L H K P Q I V L Q D V C L N V L R Y R V Y T N P R - Y C K M F V - M F C I D T G S T Q T P D S I A R C L S E C F . . . . . . 67894 CATCAGATGTCCAAAGTTTTCATTTATGCTTCATCAATCGCGAATTTTGCGGATTGTTTT H Q M S K V F I Y A S S I A N F A D C F I R C P K F S F M L H Q S R I L R I V L A S D V Q S F H L C F I N R E F C G L F . . . 67954 AGTCCTTGTGCAGTTGATCTG S P C A V D L V L V Q L I - S L C S - S Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-11_AGS-1_PPS_1 (63538 64044) (frame '0'; 504 bp, 168 residues) 1 VIEGGNGGSG LQMPANYGDY FIGPGFEQLI QNLAENDPNR YGTPPASRAA VEGLPTIKVD 61 EELMRSELAQ CAVCKDDFEM GSDVIQMPCK HVYHKDCIIP WLELHSSCPV CRYELPTDEP 121 ENENRQRDND GDSSGDGSAS GSGGSGRRFT TISLPWPLGS FGASSSQG- PGL 12 (+ strand): 78787 80541 AGS-1 (78787 78886,78917 79532) SCR (e 0.860 d 0.000 a 0.000,e 0.972) Exon 1 78787 78886 ( 100 n); score: 0.860 Intron 1 78887 78916 ( 30 n); Pd: 0.000 Pa: 0.000 Exon 2 78917 79532 ( 616 n); score: 0.972 PGS (78787 78886,78917 79532) SGN-U319029+ 3-phase translation of AGS-1 (+strand): . . . . . . 78787 TTTTTTTACATATTTGTTGTTTTGGGGCTCTGTTTTTTTTTTTTTTGCTTCCATGAATCG F F Y I F V V L G L C F F F F C F H E S F F T Y L L F W G S V F F F F A S M N R F L H I C C F G A L F F F F L L P - I . . . . : . . 78847 AGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTT : TGTTTGGGGTTTTGTTTAAT S F F Y Y L K L Q L N L L : L F G V L F N A F S I T - N F N - T C F : C L G F C L I E L F L L L E T S T E P A F : V W G F V - . . . . . . 78937 TGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCT - A L F S R A W - I C C F S S L L G F A E L C F P E L G E F V V F L L C W G L L L S S V F Q S L V N L L F F F F V G V C . . . . . . 78997 CAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGT Q F S S - I P Y W C S I W T - F S I I C N S A H K S H I G A L F G P D F Q L F V S I Q L I N P I L V L Y L D L I F N Y L . . . . . . 79057 TGTTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTAT C F L F V G V C S I Q L T I P V L V L Y V F Y L L G F A Q F S S Q F P Y - Y S I L F F I C W G L L N S A H N S R I S T L . . . . . . 79117 TTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTC F G F D F R L L L G F V C - - I L V I F L D L I F D Y C W V L F V D K S - - F S F W I - F S I I V G F C L L I N P S N F . . . . . . 79177 CACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGA H H Y R F C C - C F E L L M S T S A E G T T T V F A A S V L S F - C R R L Q R E P P L P F L L L V F - A S N V D V C R G . . . . . . 79237 AATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACA N G A I I D P Q R Q Q Q Q A P T G V G T M E L - L I L R G N N N R R L L G L V Q K W S Y N - S S E A T T T G A Y W G W Y . . . . . . 79297 AATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGT N G A L T V K K P P V K D R H S K V D G M V L - Q - K N R R - K T G I V R L M V K W C F N S E K T A G K R P A - - G - W . . . . . . 79357 AGAGGAAGACGTATAAGGATGCCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGT R G R R I R M P I V C A A R V F Q L T R E E D V - G C Q L Y V R Q E F F S L L V - R K T Y K D A N C M C G K S F S A Y S . . . . . . 79417 GAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCT E L G H K S D G Q T I E W L L R Q A E P N W V I N P M D K L L N G C F V K L S L - I G S - I R W T N Y - M A A S S S - A . . . . . . 79477 TCAATTATAGCTGCTACTGGTACTGGTACTATTCCTGCTAGTTTCTCGACTGTATC S I I A A T G T G T I P A S F S T V Q L - L L L V L V L F L L V S R L Y F N Y S C Y W Y W Y Y S C - F L D C I Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-12_AGS-1_PPS_1 (79201 79530) (frame '1'; 330 bp, 110 residues) 1 CFELLMSTSA EGNGAIIDPQ RQQQQAPTGV GTNGALTVKK PPVKDRHSKV DGRGRRIRMP 61 IVCAARVFQL TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTIPASFSTV >C04HBa0127E11.1+_PGL-12_AGS-1_PPS_2 (78878 78886,78917 79108) (frame '2'; 198 bp, 66 residues) 1 TCFCLGFCLI ELCFPELGEF VVFLLCWGLL NSAHKSHIGA LFGPDFQLFV VFYLLGFAQF 61 SSQFPY- AGS-2 (79710 80541) SCR (e 0.993) Exon 1 79710 80541 ( 832 n); score: 0.993 PGS (79710 80541) SGN-U322624+ 3-phase translation of AGS-2 (+strand): . . . . . . 79710 TACTGCTGTGGGTCCCACAGCTGGGTTTTGGGCTGTTCCAGCTAGGCCTGATTTTGGTCA Y C C G S H S W V L G C S S - A - F W S T A V G P T A G F W A V P A R P D F G Q L L W V P Q L G F G L F Q L G L I L V . . . . . . 79770 AATTTGGAGCTTTGCGGCGGCACCGCCACCTGAAATGATGGTGCCAACCTCCGCGGCTGC N L E L C G G T A T - N D G A N L R G C I W S F A A A P P P E M M V P T S A A A K F G A L R R H R H L K - W C Q P P R L . . . . . . 79830 AGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGAT S S C S R G S V K F A E F - I L S A A D A A A A A A A L S S Q S S R F F Q Q Q M Q Q L Q P R Q R - V R R V L D S F S S R . . . . . . 79890 GGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAA G - G F S C - S W E L L T N D S R A S Q G E A S A A R V G N Y L P M T Q G H L N W V R L Q L L E L G I T Y Q - L K G I S . . . . . . 79950 TTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGG F A S F S I R S S T A L F R E K R R R R L L A S L S G P P Q P S S G R R D D D G I C - L L Y Q V L H S P L P G E E T T T . . . . . . 80010 ACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGT T L K I - L L L L L L L S L L L L I Y R R - R Y D Y C Y C Y C Y R Y C C - Y I V D V E D M I I V I V I V I V I V V N I S . . . . . . 80070 ATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGT I N V F - C S C L C - M R N L L L G S S - M C F N V L V C V R - E I C C - V L V Y K C V L M F L F V L D E K F V A R F - . . . . . . 80130 GAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTG E - E M N - G L V Q F H E L L L G L G L S E K - T R G L F N F M N Y C - D - V C - V R N E L G A C S I S - I I A R I R F . . . . . . 80190 TTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTG F A I S H L S R V Y V H R V L V L - A V L L Y L I C Q E F T F T E F W C C K L W V C Y I S F V K S L R S P S F G V V S C . . . . . . 80250 GGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGT G R - H E T Q A S G E V V A C D D E F G D D N T K H K H Q G K L L L V M M N L V G T I T R N T S I R G S C C L - - - I W . . . . . . 80310 GGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAG G V C S V V C R P H N K L L - S H C N K G F V L L F A D L T I S C F D H I V T R W G L F C C L Q T S Q - A A L I T L - Q . . . . . . 80370 ATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAA I - - G I S V D Y E N L - F H M N V L - Y N R G S V W T M K T C S S T - M F C K D I I G D Q C G L - K P V V P H E C F V . . . . . . 80430 GGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCAGTTG G N H G G F R - I Q F C N L L K L Y Q L E T M A V S V E F N S V I C - N Y I S C R K P W R F P L N S I L - F V E T I S V . . . . . . 80490 TGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTATTACT - A - T F L L K R L L W T S I Y Y E L K L S Y S K D C Y G L Q F I T V S L N F P T Q K I A M D F N L L Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-12_AGS-2_PPS_1 (79711 80016) (frame '2'; 303 bp, 101 residues) 1 TAVGPTAGFW AVPARPDFGQ IWSFAAAPPP EMMVPTSAAA AAAAAAALSS QSSRFFQQQM 61 GEASAARVGN YLPMTQGHLN LLASLSGPPQ PSSGRRDDDG R- >C04HBa0127E11.1+_PGL-12_AGS-2_PPS_2 (80185 80418) (frame '2'; 231 bp, 77 residues) 1 VCLLYLICQE FTFTEFWCCK LWDDNTKHKH QGKLLLVMMN LVGFVLLFAD LTISCFDHIV 61 TRYNRGSVWT MKTCSST- 3-phase translation of AGS-2 (-strand): . . . . . . 80541 AGTAATAAATTGAAGTCCATAGCAATCTTTTGAGTAGGAAAGTTTAAGCTCACAACTGAT S N K L K S I A I F - V G K F K L T T D V I N - S P - Q S F E - E S L S S Q L I - - I E V H S N L L S R K V - A H N - . . . . . . 80481 ATAGTTTCAACAAATTACAGAATTGAATTCAACGGAAACCGCCATGGTTTCCTTACAAAA I V S T N Y R I E F N G N R H G F L T K - F Q Q I T E L N S T E T A M V S L Q N Y S F N K L Q N - I Q R K P P W F P Y K . . . . . . 80421 CATTCATGTGGAACTACAGGTTTTCATAGTCCACACTGATCCCCTATTATATCTTGTTAC H S C G T T G F H S P H - S P I I S C Y I H V E L Q V F I V H T D P L L Y L V T T F M W N Y R F S - S T L I P Y Y I L L . . . . . . 80361 AATGTGATCAAAGCAGCTTATTGTGAGGTCTGCAAACAACAGAACAAACCCCACCAAATT N V I K A A Y C E V C K Q Q N K P H Q I M - S K Q L I V R S A N N R T N P T K F Q C D Q S S L L - G L Q T T E Q T P P N . . . . . . 80301 CATCATCACAAGCAACAACTTCCCCTGATGCTTGTGTTTCGTGTTATCGTCCCACAGCTT H H H K Q Q L P L M L V F R V I V P Q L I I T S N N F P - C L C F V L S S H S L S S S Q A T T S P D A C V S C Y R P T A . . . . . . 80241 ACAACACCAAAACTCGGTGAACGTAAACTCTTGACAAATGAGATATAGCAAACAAACCTA T T P K L G E R K L L T N E I - Q T N L Q H Q N S V N V N S - Q M R Y S K Q T - Y N T K T R - T - T L D K - D I A N K P . . . . . . 80181 ATCCTAGCAATAATTCATGAAATTGAACAAGCCCCTAGTTCATTTCTCACTCACTAGAAC I L A I I H E I E Q A P S S F L T H - N S - Q - F M K L N K P L V H F S L T R T N P S N N S - N - T S P - F I S H S L E . . . . . . 80121 CTAGCAACAAATTTCTCATCTAACACAAACAAGAACATTAAAACACATTTATACGATATA L A T N F S S N T N K N I K T H L Y D I - Q Q I S H L T Q T R T L K H I Y T I Y P S N K F L I - H K Q E H - N T F I R Y . . . . . . 80061 TTAACAACAATAACGATAACAATAACAATAACAATAATCATATCTTCAACGTCCGTCGTC L T T I T I T I T I T I I I S S T S V V - Q Q - R - Q - Q - Q - S Y L Q R P S S I N N N N D N N N N N N N H I F N V R R . . . . . . 80001 GTCTCTTCTCCCGGAAGAGGGCTGTGGAGGACCTGATAGAGAAGCTAGCAAATTGAGATG V S S P G R G L W R T - - R S - Q I E M S L L P E E G C G G P D R E A S K L R C R L F S R K R A V E D L I E K L A N - D . . . . . . 79941 CCCTTGAGTCATTGGTAAGTAATTCCCAACTCTAGCAGCTGAAGCCTCACCCATCTGCTG P L S H W - V I P N S S S - S L T H L L P - V I G K - F P T L A A E A S P I C C A L E S L V S N S Q L - Q L K P H P S A . . . . . . 79881 CTGAAAGAATCTAGAACTCTGCGAACTTAACGCTGCCGCGGCTGCAGCTGCTGCAGCCGC L K E S R T L R T - R C R G C S C C S R - K N L E L C E L N A A A A A A A A A A A E R I - N S A N L T L P R L Q L L Q P . . . . . . 79821 GGAGGTTGGCACCATCATTTCAGGTGGCGGTGCCGCCGCAAAGCTCCAAATTTGACCAAA G G W H H H F R W R C R R K A P N L T K E V G T I I S G G G A A A K L Q I - P K R R L A P S F Q V A V P P Q S S K F D Q . . . . . . 79761 ATCAGGCCTAGCTGGAACAGCCCAAAACCCAGCTGTGGGACCCACAGCAGTA I R P S W N S P K P S C G T H S S S G L A G T A Q N P A V G P T A V N Q A - L E Q P K T Q L W D P Q Q Maximal non-overlapping open reading frames (>= 64 codons): none PGL 13 (+ strand): 80857 86818 AGS-1 (80857 80877,83047 83351,83810 83934) SCR (e 0.762 d 0.000 a 0.268,e 0.839 d 0.000 a 0.000,e 0.880) Exon 1 80857 80877 ( 21 n); score: 0.762 Intron 1 80878 83046 (2169 n); Pd: 0.000 Pa: 0.268 Exon 2 83047 83351 ( 305 n); score: 0.839 Intron 2 83352 83809 ( 458 n); Pd: 0.000 Pa: 0.000 Exon 3 83810 83934 ( 125 n); score: 0.880 PGS (80857 80877,83047 83351,83810 83844) SGN-U313322+ PGS (83023 83262) SGN-U313325+ PGS (83214 83351,83810 83934) SGN-U334276- 3-phase translation of AGS-1 (+strand): . . . : . . . 80857 AATGGAACAGCTCAAAGTTTC : GCAATAGACAAGTGTTAAGAGCCTGTTTGGCTCAGCTTA N G T A Q S F : A I D K C - E P V W L S L M E Q L K V S : Q - T S V K S L F G S A - W N S S K F : R N R Q V L R A C L A Q L . . . . . . 83086 AAAACTGGTCAAACTGACTTAAAAACTGGTTTTTGACTTATTTAGCTGTTTGGCAATACT K T G Q T D L K T G F - L I - L F G N T K L V K L T - K L V F D L F S C L A I L K N W S N - L K N W F L T Y L A V W Q Y . . . . . . 83146 CAAAATAACTTATTTTAAGTTTAAAAAAACTTATTTTAGGTCAAAAGTTAAAAGCTGGGT Q N N L F - V - K N L F - V K S - K L G K I T Y F K F K K T Y F R S K V K S W V S K - L I L S L K K L I L G Q K L K A G . . . . . . 83206 AGAGATGCTTTTTTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGATCACATTTTTACGTT R D A F F F F S L - A V L S - S H F Y V E M L F F F L A Y K L F - V D H I F T F - R C F F F F - L I S C F K L I T F L R . . . . . . 83266 TTTGGCCTTAATATTTTTATACAATCTCCAAATTACCTACATAACTCTAATATCTCTTTC F G L N I F I Q S P N Y L H N S N I S F L A L I F L Y N L Q I T Y I T L I S L S F W P - Y F Y T I S K L P T - L - Y L F . . . : . . . 83326 TTTCATTTTTCCTTTTTCACGTGTGG : TTTTTTAACTTCAGCACTTTTATCCAAACGCATA F H F S F F T C G : F L T S A L L S K R I F I F P F S R V : V F - L Q H F Y P N A - L S F F L F H V W : F F N F S T F I Q T H . . . . . . 83844 ACTGCTTATTTTAAAAATAAGTTTCAGCAATTTCAAAAGTATTTTTTTAAAGCTGTTTTT T A Y F K N K F Q Q F Q K Y F F K A V F L L I L K I S F S N F K S I F L K L F L N C L F - K - V S A I S K V F F - S C F . . . . 83904 ATCAAGCCCATCCAAACGGGCACTTATTATG I K P I Q T G T Y Y S S P S K R A L I M Y Q A H P N G H L L Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-13_AGS-1_PPS_1 (83251 83351,83810 83933) (frame '1'; 225 bp, 75 residues) 1 SHFYVFGLNI FIQSPNYLHN SNISFFHFSF FTCGFLTSAL LSKRITAYFK NKFQQFQKYF 61 FKAVFIKPIQ TGTYY AGS-2 (81242 81267,83064 83358,83815 83856) SCR (e 0.769 d 0.000 a 0.000,e 0.845 d 0.000 a 0.000,e 0.786) Exon 1 81242 81267 ( 26 n); score: 0.769 Intron 1 81268 83063 (1796 n); Pd: 0.000 Pa: 0.000 Exon 2 83064 83358 ( 295 n); score: 0.845 Intron 2 83359 83814 ( 456 n); Pd: 0.000 Pa: 0.000 Exon 3 83815 83856 ( 42 n); score: 0.786 PGS (81242 81267,83064 83176) SGN-U334277+ PGS (83047 83358,83815 83856) SGN-U313328- 3-phase translation of AGS-2 (+strand): . . . : . . . 81242 CGAGAAAACCAATTTTGAGACATCTG : AGAGCCTGTTTGGCTCAGCTTAAAAACTGGTCAA R E N Q F - D I - : E P V W L S L K T G Q E K T N F E T S : E S L F G S A - K L V K R K P I L R H L : R A C L A Q L K N W S . . . . . . 83098 ACTGACTTAAAAACTGGTTTTTGACTTATTTAGCTGTTTGGCAATACTCAAAATAACTTA T D L K T G F - L I - L F G N T Q N N L L T - K L V F D L F S C L A I L K I T Y N - L K N W F L T Y L A V W Q Y S K - L . . . . . . 83158 TTTTAAGTTTAAAAAAACTTATTTTAGGTCAAAAGTTAAAAGCTGGGTAGAGATGCTTTT F - V - K N L F - V K S - K L G R D A F F K F K K T Y F R S K V K S W V E M L F I L S L K K L I L G Q K L K A G - R C F . . . . . . 83218 TTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGATCACATTTTTACGTTTTTGGCCTTAAT F F F S L - A V L S - S H F Y V F G L N F F L A Y K L F - V D H I F T F L A L I F F F - L I S C F K L I T F L R F W P - . . . . . . 83278 ATTTTTATACAATCTCCAAATTACCTACATAACTCTAATATCTCTTTCTTTCATTTTTCC I F I Q S P N Y L H N S N I S F F H F S F L Y N L Q I T Y I T L I S L S F I F P Y F Y T I S K L P T - L - Y L F L S F F . . . : . . . 83338 TTTTTCACGTGTGGATGATAG : TAACTTCAGCACTTTTATCCAAACGCATAACTGCTTATT F F T C G - - : - L Q H F Y P N A - L L I F S R V D D S : N F S T F I Q T H N C L F L F H V W M I : V T S A L L S K R I T A Y . 83854 TTA L F Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (83629 83724) SCR (e 0.865) Exon 1 83629 83724 ( 96 n); score: 0.865 PGS (83629 83724) SGN-U341170+ 3-phase translation of AGS-3 (+strand): . . . . . . 83629 TCTTATAAATAATTTGTGATGAGAAAGAAATATGTGAATGATAGCAAAATATAATTATTT S Y K - F V M R K K Y V N D S K I - L F L I N N L - - E R N M - M I A K Y N Y L L - I I C D E K E I C E - - Q N I I I . . . . 83689 ATGGCTGTAAAATATAAATTAATTAACTTTTATTAT M A V K Y K L I N F Y Y W L - N I N - L T F I Y G C K I - I N - L L L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (-strand): . . . . . . 83724 ATAATAAAAGTTAATTAATTTATATTTTACAGCCATAAATAATTATATTTTGCTATCATT I I K V N - F I F Y S H K - L Y F A I I - - K L I N L Y F T A I N N Y I L L S F N K S - L I Y I L Q P - I I I F C Y H . . . . 83664 CACATATTTCTTTCTCATCACAAATTATTTATAAGA H I F L S H H K L F I R T Y F F L I T N Y L - S H I S F S S Q I I Y K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (84223 84439,85008 85110,85854 85925,86273 86478,86592 86818) SCR (e 0.991 d 0.989 a 0.898,e 1.000 d 0.983 a 0.971,e 1.000 d 0.996 a 0.975,e 0.995 d 0.977 a 1.000,e 0.890) Exon 1 84223 84439 ( 217 n); score: 0.991 Intron 1 84440 85007 ( 568 n); Pd: 0.989 Pa: 0.898 Exon 2 85008 85110 ( 103 n); score: 1.000 Intron 2 85111 85853 ( 743 n); Pd: 0.983 Pa: 0.971 Exon 3 85854 85925 ( 72 n); score: 1.000 Intron 3 85926 86272 ( 347 n); Pd: 0.996 Pa: 0.975 Exon 4 86273 86478 ( 206 n); score: 0.995 Intron 4 86479 86591 ( 113 n); Pd: 0.977 Pa: 1.000 Exon 5 86592 86818 ( 227 n); score: 0.890 PGS (84223 84439,85008 85110,85854 85925,86273 86478,86592 86818) SGN-U338058+ 3-phase translation of AGS-4 (+strand): . . . . . . 84223 CTAAGATTTTAGAACGTAGAAAAACAACAATTTTCAAAAGCTAATCCCAAATTCCAAAAA L R F - N V E K Q Q F S K A N P K F Q K - D F R T - K N N N F Q K L I P N S K N K I L E R R K T T I F K S - S Q I P K . . . . . . 84283 TTTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAGTGAATC F S D R R F F F P I R N R K - K W Q - I F P I G D F F F R S E T E N K N G S E S I F R S E I F F S D Q K Q K I K M A V N . . . . . . 84343 CTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTA L N Y F L M E C Q F L S S M N C S S Y L S I I S - W N A N S F P Q - I V R P I - P Q L F P N G M P I P F L N E L F V L S . . . . : . . 84403 GACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGG : TGTAGGAAAAACAAGAACAAGAG D M V L S L R L T K S L : V - E K Q E Q E T W C - V - G - Q N P W : C R K N K N K R R H G V E F E V D K I P G : V G K T R T R . . . . . . 85031 GTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCA V Q S T C R I F G W S L L Q R C L W I S Y N L L V E Y S D G L C C K D A C G F H G T I Y L S N I R M V F V A K M P V D F . . : . . . . 85091 TTGCTTTTGATATGCCTTTG : CTTTTTGTTTCTGATGAAATATTTACGCAACCAGTATTCC L L L I C L C : F L F L M K Y L R N Q Y S C F - Y A F : A F C F - - N I Y A T S I P I A F D M P L : L F V S D E I F T Q P V F . . . . : . . 85894 ACTGCAACAACATCTCTGGATTTGTAGATCCG : GTTGTTCCAGATAATGAAAACAGTGCCT T A T T S L D L - I R : L F Q I M K T V P L Q Q H L W I C R S : G C S R - - K Q C L H C N N I S G F V D P : V V P D N E N S A . . . . . . 86301 TGTACTCCACACATACATTCAAGATTTTGTTCAAGGATGGTGGTTGTGGGACTTTCGTGC C T P H I H S R F C S R M V V V G L S C V L H T Y I Q D F V Q G W W L W D F R A L Y S T H T F K I L F K D G G C G T F V . . . . . . 86361 CATTATTTTTCAACTTAATCGCCTCTGTGAGACGAGCTCAGCAACAGTCTGGGGTACAGC H Y F S T - S P L - D E L S N S L G Y S I I F Q L N R L C E T S S A T V W G T A P L F F N L I A S V R R A Q Q Q S G V Q . . . . . . : 86421 CACGGGCAGACCCTCTCCAAGCTGCACAAACTCCAGTTGATGAGATGATTAGACATGC : TT H G Q T L S K L H K L Q L M R - L D M : L T G R P S P S C T N S S - - D D - T C : L P R A D P L Q A A Q T P V D E M I R H A : . . . . . . 86594 ATGTCGATCCCAATGATCCAACGAAAATCTTCTTGCAGCAGCCTACTCCAGAGTCGCAAC M S I P M I Q R K S S C S S L L Q S R N C R S Q - S N E N L L A A A Y S R V A T Y V D P N D P T K I F L Q Q P T P E S Q . . . . . . 86654 TTAGGCGTCGTTCATACCAATCACAACCTGCTTAAAACTCAATATACTTCTTGTTCAATG L G V V H T N H N L L K T Q Y T S C S M - A S F I P I T T C L K L N I L L V Q C L R R R S Y Q S Q P A - N S I Y F L F N . . . . . . 86714 CAACCTGAATTGTGAATTGTTCATTTCCTGATGTACTTTTTCTCTTGGTGATTGCTTTGA Q P E L - I V H F L M Y F F S W - L L - N L N C E L F I S - C T F S L G D C F D A T - I V N C S F P D V L F L L V I A L . . . . . 86774 TTCTATTAAAATATATAAACAAACTAGAAGAAAATGGGCTTGCAT F Y - N I - T N - K K M G L H S I K I Y K Q T R R K W A C I L L K Y I N K L E E N G L A Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-13_AGS-4_PPS_1 (84267 84439,85008 85110,85854 85925,86273 86478,86592 86688) (frame '0'; 648 bp, 216 residues) 1 SQIPKIFRSE IFFSDQKQKI KMAVNPQLFP NGMPIPFLNE LFVLSRHGVE FEVDKIPGVG 61 KTRTRGTIYL SNIRMVFVAK MPVDFIAFDM PLLFVSDEIF TQPVFHCNNI SGFVDPVVPD 121 NENSALYSTH TFKILFKDGG CGTFVPLFFN LIASVRRAQQ QSGVQPRADP LQAAQTPVDE 181 MIRHAYVDPN DPTKIFLQQP TPESQLRRRS YQSQPA- AGS-5 (84277 84439,85008 85865) SCR (e 0.960 d 0.989 a 0.898,e 0.994) Exon 1 84277 84439 ( 163 n); score: 0.960 Intron 1 84440 85007 ( 568 n); Pd: 0.989 Pa: 0.898 Exon 2 85008 85865 ( 858 n); score: 0.994 PGS (84277 84439,85008 85865) SGN-U324667+ 3-phase translation of AGS-5 (+strand): . . . . . . 84277 CAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAG Q K F S D R R F F F P I R N R K - K W Q K N F P I G D F F F R S E T E N K N G S K I F R S E I F F S D Q K Q K I K M A . . . . . . 84337 TGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCC - I L N Y F L M E C Q F L S S M N C S S E S S I I S - W N A N S F P Q - I V R P V N P Q L F P N G M P I P F L N E L F V . . . . . : . 84397 TATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGG : TGTAGGAAAAACAAGAA Y L D M V L S L R L T K S L : V - E K Q E I - T W C - V - G - Q N P W : C R K N K N L S R H G V E F E V D K I P G : V G K T R . . . . . . 85025 CAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGG Q E V Q S T C R I F G W S L L Q R C L W K R Y N L L V E Y S D G L C C K D A C G T R G T I Y L S N I R M V F V A K M P V . . . . . . 85085 ATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTC I S L L L I C L W Y V I L L C L F T V L F H C F - Y A F G M L Y F Y V F L P S S D F I A F D M P L V C Y T S M S F Y R P . . . . . . 85145 CGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTC R F C K H H M L T N S I H S - L V - F F D F A N T T C - P T L F T H D W Y S F S P I L Q T P H A N Q L Y S L M T G I V F . . . . . . 85205 TGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAAC C G S E K K I A K T L F C Y S Y Y Y I N V D Q R R K S R K L S F V T L T I I L T L W I R E E N R E N S L L L L L L L Y - . . . . . . 85265 AAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGC K L L W R S F S I C C N - T N I C I M C S Y Y G A P S V S A V T R P T Y A - C A Q V T M A L L Q Y L L - L D Q H M H N V . . . . . . 85325 AATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTT N S E W R F Q V - R L A I F L L L L L F I Q N G D S K Y N D - R Y F F C C F F L Q F R M A I P S I T I S D I S F V A S F . . . . . . 85385 GAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTT E A E Q N F V Y D M L L N P V V L F S L R L N K T L C M I C F - I L - F C S L F - G - T K L C V - Y A S E S C S F V L S . . . . . . 85445 TGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGA - N T F - K V V F Y Y V Q F R M A R S R E I H F R K S Y F T M C N S E W R V V E L K Y I L E S R I L L C A I Q N G A - - . . . . . . 85505 GCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTC A D I S L W S N T I L L L - N C T V C F Q I Y H F G Q I R S F S Y E T V L F V S S R Y I T L V K Y D P S P M K L Y C L F . . . . . . 85565 TAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATAT - S F D M L I E W Y Y D M I Y I - F V Y K A L T C - L N G I M T - F I S D L Y I L K L - H V N - M V L - H D L Y L I C I . . . . . . 85625 TAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTC - A Q H C - I Q H L L G S M L W H I L F K H N I A R Y N I C - E A C Y G I Y C S L S T T L L D T T S A R K H V M A Y I V . . . . . . 85685 GGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAG G Y L L R C M T - I R V H L F Y V F V Q D I C - D A - H E F V F I C S M F L F R R I F V K M H D M N S C S S V L C F C S . . . . . . 85745 AGAAATAATCTGGTAAGTTGGTGACTTTGCTGAGCAAGAAGTTACAAAACTGAGAAATGT R N N L V S W - L C - A R S Y K T E K C E I I W - V G D F A E Q E V T K L R N V E K - S G K L V T L L S K K L Q N - E M . . . . . . 85805 AAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTCATTCTGCAGCTTTTTGTTTC K L H L L - Q S L F T F F H S A A F C F S Y I C F D K V Y L P F F I L Q L F V S - A T F A L T K F I Y L F S F C S F L F . 85865 T Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1+_PGL-13_AGS-5_PPS_1 (84279 84439,85008 85263) (frame '0'; 414 bp, 138 residues) 1 KIFRSEIFFS DQKQKIKMAV NPQLFPNGMP IPFLNELFVL SRHGVEFEVD KIPGVGKTRT 61 RGTIYLSNIR MVFVAKMPVD FIAFDMPLVC YTSMSFYRPP ILQTPHANQL YSLMTGIVFL 121 WIREENRENS LLLLLLLY- PGL 14 (- strand): 90860 87002 AGS-1 (90860 90574,89207 89034,88261 87002) SCR (e 0.997 d 1.000 a 0.998,e 1.000 d 0.994 a 0.998,e 0.998) Exon 1 90860 90574 ( 287 n); score: 0.997 Intron 1 90573 89208 (1366 n); Pd: 1.000 Pa: 0.998 Exon 2 89207 89034 ( 174 n); score: 1.000 Intron 2 89033 88262 ( 772 n); Pd: 0.994 Pa: 0.998 Exon 3 88261 87002 (1260 n); score: 0.998 PGS (90860 90574,89207 89034,88261 87002) SGN-U315915+ 3-phase translation of AGS-1 (-strand): . . . . . . 90860 ACAAAAAAAAAATTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAG T K K K L E E N P L Q H - F K N T Q R E Q K K N - K K T H C S T N S R I L R E R K K K I R R K P I A A L I Q E Y S E R . . . . . . 90800 AAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAA K R K S W - Q W L L - M V - D F H G H Q R G R V G N N G C C K W C R T F M A I K E E E E L V T M A A V N G V G L S W P S . . . . . . 90740 AATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACC N - P K I K H P N G V F L H L T V D A T I D Q K S N T Q M G F F S I S P S M Q P K L T K N Q T P K W G F S P S H R R C N . . . . . . 90680 CATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGA H L L L L L L Q P L E - Q P Q L M K R R I F F F F F C N H - N D S L S - - K E E P S S S S S S A T I R M T A S V D E K K . . . . . : . 90620 AAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG : GAGTTGATGCCAG K R S H L R S L K K L S A K P R : S - C Q N V H T - E V - R S F Q Q S Q : G V D A R K T F T L E K S E E A F S K A K : E L M P . . . . . . 89194 GAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTG E V - I P L S V L S S Q L A D N L S L L R C K F P C P C F Q V S W R T T Y H Y - G G V N S P V R A F K S V G G Q P I I I . . . . . . 89134 ACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCG T P - R A L V C G T - M V T S T L T M S L R E G L S Y A G H R W - R V H - L C R D S V K G S R M R D I D G N E Y I D Y V . . . . . : . 89074 GATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG : GTGCTAGCAGCATTGGCTG D H G D Q L - L V M R M M R : C - Q H W L I M G T S Y N W S C G - - : G A S S I G - G S W G P A I I G H A D D E : V L A A L A . . . . . . 88242 AAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAG K Q - R K E R V S V L H V S L K I H W Q N N E E R N E F R C S M S P - K Y T G R E T M K K G T S F G A P C L L E N T L A . . . . . . 88182 AGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAG R W L F Q L F Q A - K W F D L S T L V Q D G Y F S C S K H R N G S I C Q L W Y R E M V I S A V P S I E M V R F V N S G T . . . . . . 88122 AAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCA K H V W E Y Y G W L V L S L A V L R S S S M Y G S T T A G S C F H L P S - D H Q E A C M G V L R L A R A F T C R P K I I . . . . . . 88062 AATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCG N S R V V T M V M L I H F L L K Q A V A I R G L L P W S C - S I S C - S R Q W R K F E G C Y H G H A D P F L V K A G S G . . . . . . 88002 TTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTC L P P S V F L T L R E F Q R Q L L S I L C H P R S S - L S G S S K G S Y Y R Y S V A T L G L P D S P G V P K A A T I D T . . . . . . 87942 TGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAG - P H L T M T F L L L R A S L R S T K E D R T L Q - H F C C - E P L - G A Q R R L T A P Y N D I S A V E S L F E E H K G . . . . . . 87882 AAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGC K - P L - F S S L - S E M L A S S H L S N S R C N S R A C S R K C W L H P T - A E I A A V I L E P V V G N A G F I P P K . . . . . . 87822 TAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCG - N F L L P F A R S P K R M M H F L F S R I S C C H S Q D H Q R E - C T S Y F R L E F L A A I R K I T K E N D A L L I F . . . . . . 87762 ACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAA T K S - L D L D W H M A V L K S I L E - R S H D W I - I G I W R C S R V F W N N D E V M T G F R L A Y G G A Q E Y F G I . . . . . . 87702 CTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACG L Q I - Q H S G R L L A V A C Q - V L T S R F D N T R E D Y W R W L A S R C L R T P D L T T L G K I I G G G L P V G A Y . . . . . . 87642 GAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCA E E D G I - W R W - H L Q D Q C I K L A R K T G Y N G D G S T C R T N V S S W H G G R R D I M E M V A P A G P M Y Q A G . . . . . . 87582 CCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAG P - V E T H W P - L L E F T R L S G Y K P K W K P I G H D C W N S H A - A V T R T L S G N P L A M T A G I H T L K R L Q . . . . . . 87522 GACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGG D R E H T N T W T R S P R N L H K E S W T G N I R T L G Q D H R G T Y T R N L G G Q G T Y E H L D K I T A E L T Q G I L . . . . . . 87462 ATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCT M L E R R P V M Q C V V A P - G G C L A C W K E D R S C N V W W L H K G D V W L D A G K K T G H A M C G G S I R G M F G . . . . . . 87402 TCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAA S S S R M V P S I T F R M Q R R V I Q K L L R G W S H L - L F G C K E E - Y R K F F F A D G P I Y N F S D A K K S D T E . . . . . . 87342 AATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGT N L A D S I E G C W R K V F T L H H H S I W Q I L - R D A G G R C L L C T I T V K F G R F Y R G M L E E G V Y F A P S Q . . . . . . 87282 TTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTG L R L D L L A - H T L Q R I F K G L - L - G W I Y - L S T H S R G Y S K D C S C F E A G F T S L A H T P E D I Q R T V A . . . . . . 87222 CAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGA Q L K K F - S K F N H Y I S F C M L D G S - K S F E A N L T T I F L F V C - M E A A E K V L K Q I - P L Y F F L Y A R W . . . . . . 87162 GAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGT E I F L F K F L F C - I K G D F V T Y C R F S F L S F C S V E - K V I L - H I V R D F P F - V F V L L N K R - F C N I L . . . . . . 87102 TTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTT L F R N M L H Y F T S C I - S I F W S L Y S E T C C I I L P P V F K A F F G H L F I Q K H A A L F Y L L Y L K H F L V T . . . . . 87042 GAGTACATCTGTACTATATATTAACAAGAGGAGTCTTGGAG E Y I C T I Y - Q E E S W S T S V L Y I N K R S L G - V H L Y Y I L T R G V L E Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0127E11.1-_PGL-14_AGS-1_PPS_1 (90858 90574,89207 89034,88261 87194) (frame '0'; 1524 bp, 508 residues) 1 KKKIRRKPIA ALIQEYSERE EEELVTMAAV NGVGLSWPSK LTKNQTPKWG FSPSHRRCNP 61 SSSSSSATIR MTASVDEKKK TFTLEKSEEA FSKAKELMPG GVNSPVRAFK SVGGQPIIID 121 SVKGSRMRDI DGNEYIDYVG SWGPAIIGHA DDEVLAALAE TMKKGTSFGA PCLLENTLAE 181 MVISAVPSIE MVRFVNSGTE ACMGVLRLAR AFTCRPKIIK FEGCYHGHAD PFLVKAGSGV 241 ATLGLPDSPG VPKAATIDTL TAPYNDISAV ESLFEEHKGE IAAVILEPVV GNAGFIPPKL 301 EFLAAIRKIT KENDALLIFD EVMTGFRLAY GGAQEYFGIT PDLTTLGKII GGGLPVGAYG 361 GRRDIMEMVA PAGPMYQAGT LSGNPLAMTA GIHTLKRLQG QGTYEHLDKI TAELTQGILD 421 AGKKTGHAMC GGSIRGMFGF FFADGPIYNF SDAKKSDTEK FGRFYRGMLE EGVYFAPSQF 481 EAGFTSLAHT PEDIQRTVAA AEKVLKQI- ... finished at: Mon Aug 28 20:57:32 2006