<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 15:00:47"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376856" ref_strand="+" ref_description="SGN-E376856 [TUS-19-P13](-)">
      <seq>atatgttagaaatgctttatgtaattctggtattcctactatctcttctccggtatatgtgtatactgtatttagtagtccgtagtttataacatgtttttactaggttggggttagtcttaggttgtgcaataagtttgttatatccttgtagtttcagggttatataatcttcttcgggatttttttttttgtatagatcttgggtttaggtttaggtatgtttggattttgtatatgttttcaatgtaagattgggtaatatagttatatctttttttgtcgttttgtaggcttactgcataggttgatgtttgtggttctgctggtatctgcatttgtgatttttggctgtatctgaacaaacattgttatgggttttccggagtttcccatcatttccttctatctctggctgttttccgtcaaccgtacgacgtagctccgcatgtttttggtcatgctgctgaccgttagctttcagctcctttacttctatttctatcttttctactttttggcatagatttgtcatcattgccagtagatctttcatcatatctttttcttgagaggtagtctgcaattaaattttcgtcagtttttataatttcaattgtaaatgtaaaattcaatatatttaatatcaatcttcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="+" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="23168" stop="24497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23468" g_stop="23814" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23815" i_stop="23890" i_length="76">
            <donor d_prob="0.372" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23891" g_stop="24196" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="657" r_length="306" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="+" ref_id="SGN-E376856" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23468" e_stop="23814"/>
          <exon e_start="23891" e_stop="24196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGTTAGAAATGCTCTATGTAATTCTGGTATTCCTACCATCTCTTCTCCGGTATATGTGAATACTGTATTTAGTAGTCCGTAG-TTATAACATGTTTTTACTAGGTT-GGGTTGGTCTTAGGTAGTGCAATAAGTTTGTTATATCCTTGTAGTTTCTGGGTTATATAATCTTCTTCGGGA-TTTTTTGTTTGTGTAGATCTTGGGTTTAGGTTTAGGTATGTTTGGATTTTGTATATGTTTTCAATGTAAGATTGGCTAATATAGTTATATCTTTTTTT-TCGTTTTGCAGGCTTACTGCATAGGTTGATGTTTGTGGTTCTGCTGGTATTTGCATTTGCGGTTTTTGGGTAAATGGTTTTGCAAATAACTTGTTTAAGTTTGTGTTTTTTGGTTTTTCACTAGTTCTTTTACTTGTACCTGCAGCTGTATCTGAACAAACATTGTTATGGGTTTTCCGGAGTTTCCCATCATCTCCTTCTATCTCTGGCTGTTTTCCGTCTGCCGTACGACGTAGCTCTGCATGTTTTTGGTCATGCTGCTGACCGTTACCTTTCAGCTCCTTTACTTCTATTTCTATCTTTTCTACTTTTTGGCATAGATTTTTCATCATTGCCAGTAGATCTTTCATCATATCTTTTTCTTGAGAGGTAGTCTGCAATTAGATTTTCGTCAATTTTTATAATTTCAATTGTAAATGTAAAATTTAATATATTTAATATCAATCTTCTT</genome_strand>
        <mrna_strand>ATATGTTAGAAATGCTTTATGTAATTCTGGTATTCCTACTATCTCTTCTCCGGTATATGTGTATACTGTATTTAGTAGTCCGTAGTTTATAACATGTTTTTACTAGGTTGGGGTTAGTCTTAGGTTGTGCAATAAGTTTGTTATATCCTTGTAGTTTCAGGGTTATATAATCTTCTTCGGGATTTTTTTTTTTGTATAGATCTTGGGTTTAGGTTTAGGTATGTTTGGATTTTGTATATGTTTTCAATGTAAGATTGGGTAATATAGTTATATCTTTTTTTGTCGTTTTGTAGGCTTACTGCATAGGTTGATGTTTGTGGTTCTGCTGGTATCTGCATTTGTGATTTTTGG............................................................................CTGTATCTGAACAAACATTGTTATGGGTTTTCCGGAGTTTCCCATCATTTCCTTCTATCTCTGGCTGTTTTCCGTCAACCGTACGACGTAGCTCCGCATGTTTTTGGTCATGCTGCTGACCGTTAGCTTTCAGCTCCTTTACTTCTATTTCTATCTTTTCTACTTTTTGGCATAGATTTGTCATCATTGCCAGTAGATCTTTCATCATATCTTTTTCTTGAGAGGTAGTCTGCAATTAAATTTTCGTCAGTTTTTATAATTTCAATTGTAAATGTAAAATTCAATATATTTAATATCAATCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577887" ref_strand="+" ref_description="SGN-E577887 [LE08AH11]">
      <seq>ttgggtcggagcaccctctctagtacgagagtcatgtggtgtggtagtcgcaccaccaccctgataaaagccctctagaacacttaacaccctaaaaagtgtatcctgaagcaaaggtgtgactacaggatctggaggaacctggtcacctctgccatcaatttgaggttttgtagagacctctctagcacgacctctcactggtgctgctccacgtccacgacctctagctactatcgtactactagaacgacatctagctcgagacctacccctacccataactggggcctcaacaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="-" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="27914" stop="27012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27614" g_stop="27312" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="-" ref_id="SGN-E577887" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27614" e_stop="27312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTCTGAGCCCCCTCTCTAGTACGAGAGTCATGTGGTGTGGTAGTCGCTCCACCACCATGAGAAAAGCCCTCTAGCACACTTAACACCCTCAATAGCGTATCCTGAAGCAAAGGTGTGACTACGGGATCTGGAGGAACCTGGTCCTCTCTCTCATCAATCTGAGGTTCGGTAGAGATCTCTCTAGCACTACCTCTCAATGGTGCTGCTCCACGTCCACGACCTCTGGCTACTCTCGTACTACTAGAACGACCTCTAGCTCGAGATCTACCCCTACCCCTAGCTGGGGCCTCAACATTTGC</genome_strand>
        <mrna_strand>TTGGGTCGGAGCACCCTCTCTAGTACGAGAGTCATGTGGTGTGGTAGTCGCACCACCACCCTGATAAAAGCCCTCTAGAACACTTAACACCCTAAAAAGTGTATCCTGAAGCAAAGGTGTGACTACAGGATCTGGAGGAACCTGGTCACCTCTGCCATCAATTTGAGGTTTTGTAGAGACCTCTCTAGCACGACCTCTCACTGGTGCTGCTCCACGTCCACGACCTCTAGCTACTATCGTACTACTAGAACGACATCTAGCTCGAGACCTACCCCTACCCATAACTGGGGCCTCAACAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279140" ref_strand="+" ref_description="SGN-E279140 [cLEL-4-H21](-)">
      <seq>gtgaaccgtacgagccatgacccgggccataagaacccttagatgtctggccaccctcaaatgtcggcatagatgcatgaataggtccccgctgctgaaaagaaccactcactctctgtgatcccctacctccagatgaggcaccctgaaattgacctgatatacgagctcttttagggtccccaaactcctctctctccatcaattctgcctctttggcggcgctcacaatagactggaaagaagtcccccctagatgtccgaaacacagctgacctgatagagaaagtcaatcccctcacaaatctacggatcctctctgtttcatttggaataatggccaacgcatgcctagacaactggcaaaaacgcgccttacactctgtaaccgataaaccatcctgtctcagactctcaactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="-" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="28760" stop="27733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28460" g_stop="28033" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="-" ref_id="SGN-E279140" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28460" e_stop="28033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATCGTACG-GCTCTTACCCGAGCTATAAGAACCCCTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTATGATCCCCTACCTCCAGATGAGGCACCATGAAACTGTCCTGATATACGGGCTCTTTTAGGGTCCCCAAACTCCTCTCTTTCCATCAATTCCGCCTCTTTGGCGGCGCTCACAATGGACTTTAAAGAAGTCCCCTCCCTAGATGTCCGAAACACAGTTGACCTAATAGAGAAAGTCAATCCCCTCACAAATCTGCGGATCCTCTCTGTCTCATTTGGAATAATGGCCAACGCATACCTAGACAACTGGCAAAAACGCGCCTCATACTCTGTAACCGATAAACCATCCTTTCTCAGACTCTCAAACGTCAAGC</genome_strand>
        <mrna_strand>GTGAACCGTACGAGCCATGACCCGGGCCATAAGAACCCTTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAATTGACCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTGGCGGCGCTCACAATAGACTGGAAAGAAGT-CCC-CCCTAGATGTCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTACGGATCCTCTCTGTTTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTTACACTCTGTAACCGATAAACCATCCTGTCTCAGACTCTC-AAC-TCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330288" ref_strand="+" ref_description="SGN-E330288 [cTOD-4-J5]">
      <seq>ttttgtatcatccggggaaggccaatgttgtggccgatgctttgagtaggaagactcatagcatggggagtcttgcatctcttagtgttgaggaaagaccattggctagagatgttcaattgttagctaacagtcttgtccgattacagatctcagaggagagtgatgggatgattgcttttattgaggctcgatcttctttagtcaagcagattcgtgcacaccagtttgatgacgaaaaattatgtctcattcgagacaaagtattgagaggggaagctaaggaggttgtccttgattctgatggtgtcttgaggatcggaggcaggatttgtgtgcccaagacaggcgatttgattagattgatccttgaggaggcccattgttctcgatattctatgcatccgggagaggcgaaaatgtatcatgatctgagtcagcattactggtggtgtgggatgaagagagatattacagactttgttttgaggtgtttgacttgccagttggtcaagtgtgagcaccagtggcctgggggtgtatctcaaaggatgcctattcttacttggacgtgggagtggattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="+" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="30291" stop="31478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30591" g_stop="31178" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="+" ref_id="SGN-E330288" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30591" e_stop="31178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTATTGAGGAAAGACCATTGGCTAGAGATGTTCAATTATTAGCTAACAGTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGAATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCGAGCAGATTCGTGTACACCAGTTTGATGATGTAAAATTATGTCTCATTCGAGACAAAGTATTGAGTGGGGAAGCTAAGGAGGCGGTCCTTGATTCTGATGGTGTCTTACGGATCGGAGGCAGGATTTGTGTGCCTAAGACAGGCGATTTGATTAGATTGATTCTTGAGGAGGCCCATTGTTCTCGGTATTCCATCCATCCTGGAGCGGCGAAGATGTATCATGATCTGAGTCAGCATTACTTGTGGTGTGGGATGAAGAGAGATATTTCAGACTTTTTTTCGAGGTGTTTGACTTGCCAGCAGGTCAAGTGTGAGCACCAGCGGCCCGGGGGTGTATTTTAGAGGATGCCTATTCCTACTTGGAAGCGGGAGCGGATTACTA</genome_strand>
        <mrna_strand>TTTTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAAAGACCATTGGCTAGAGATGTTCAATTGTTAGCTAACAGTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCAAGCAGATTCGTGCACACCAGTTTGATGACGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAGGAGGTTGTCCTTGATTCTGATGGTGTCTTGAGGATCGGAGGCAGGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTCTCGATATTCTATGCATCCGGGAGAGGCGAAAATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTTTGTTTTGAGGTGTTTGACTTGCCAGTTGGTCAAGTGTGAGCACCAGTGGCCTGGGGGTGTATCTCAAAGGATGCCTATTCTTACTTGGACGTGGGAGTGGATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736427" ref_strand="+" ref_description="SGN-E736427 [LC05CH10]">
      <seq>cgatttaacgtctatgatgtgttcttttttactaactacatagtattcttctttctcccttttaaaccagttttttagtataggtatgtcaagtatttttcaacacttaaatctaatccttttccttttatttattcaaaaagtgtattatcaaatataattttttggtgtgatgattcttcatcttcataattctctttagatattatttcgttttcagacattatatttcttcttcttctatttcattatctaaattttcttctccattttcagtttctatatctgatacttcatatatactatcgttttcacttaattcatagtctatgtattctatttgcatatattcgtcatcatctataactatttctgcaatttgttttctttttggatttttaggtaatttacagtctctagctatgtgtcctatctttccgcaattataacatgtacattgggatatttttcttttaggtctatatggtcttttcattttatagtttttttcataataccttcgtcttggttgtttatatttatacttagttttattttttctataatttttatatcttttggattcttgttttttatttgtacacccaaactgtggtgccattttatttttacaacatgataaatttttatttagtactttttccatttttaatttttctttttggttctcacataattgtggtaaccattgagatagaaattttattctagcctctaaagtatctaacattccttcattattccaatcctttataattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="+" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="44831" stop="46205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45129" g_stop="45906" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="+" ref_id="SGN-E736427" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45129" e_stop="45906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTCCGTCTATGATGTGTTCTTTTTAACTAACTACATAGTATTCTTCTTTTTGTCTTTTAAACCAGTTTTTTAGTATAGGTATGTCAAGTATTTTTTCAACACTTAAATCTAATTCTTTTCCTTTTATTTGTTCAAAAAGTGTACTATCAAATATAATTTTTTGGAGTGATGATTCTTCATCTTCATAATTCTCTTTAGATATTATTTCGTTTTCAGACATTATATTTCTTCTTCTTCTATTTCATTATC------TTCTTCTCCATTTTCAGTTTCTATATTCTGATACTTCATATATACTATCATTTTCACTTAATTCATAGTCTATGTATTCTAGTTGCATATATTCGTTTTCATCTATAACTACTTCTGCAATTTGTTATCTTTTTGGATTTTTAGGTAATTTACAGTCTTTAGCTATGCGTCCTATCTTTCCGCAATTATAACAAGTACATTGAGATTTCTTTCTTTTTGGTCTATATGGTCTTTTCATTTTATAGTTTTTTACATAATACCTTCGTCTTGGTTGTTTATATTTATACTTAGTTTTATTTTTTCTATAATTTTTATATCTTCTAGATTTTTGTTTTTTATTTGTACACCCAAACTGTGGTGCTATTTTATTTTTACAACATGATAAATTTTTATTTAGTACTTTTTCCATTTTCCATTTTTCTTTTTGATTTTCACATAATTGTGTAAACCACTGAGATAGAAAATTTATTCTAGCTCCTAAAGTATCTACCATTCCTTCATTATTCCAATCCTTTATTATTTTA</genome_strand>
        <mrna_strand>CGATTTAACGTCTATGATGTGTTCTTTTTTACTAACTACATAGTATTCTTCTTTCTCCCTTTTAAACCAGTTTTTTAGTATAGGTATGTCAAGTA-TTTTTCAACACTTAAATCTAATCCTTTTCCTTTTATTTATTCAAAAAGTGTATTATCAAATATAATTTTTTGGTGTGATGATTCTTCATCTTCATAATTCTCTTTAGATATTATTTCGTTTTCAGACATTATATTTCTTCTTCTTCTATTTCATTATCTAAATTTTCTTCTCCATTTTCAGTTTCTATA-TCTGATACTTCATATATACTATCGTTTTCACTTAATTCATAGTCTATGTATTCTATTTGCATATATTCGTCATCATCTATAACTATTTCTGCAATTTGTTTTCTTTTTGGATTTTTAGGTAATTTACAGTCTCTAGCTATGTGTCCTATCTTTCCGCAATTATAACATGTACATTGGGATATTTTTCTTTTAGGTCTATATGGTCTTTTCATTTTATAGTTTTTTTCATAATACCTTCGTCTTGGTTGTTTATATTTATACTTAGTTTTATTTTTTCTATAATTTTTATATCTTTTGGATTCTTGTTTTTTATTTGTACACCCAAACTGTGGTGCCATTTTATTTTTACAACATGATAAATTTTTATTTAGTACTTTTTCCATTTTTAATTTTTCTTTTTGGTTCTCACATAATTGTGGTAACCATTGAGATAGAAATTTTATTCTAGCCTCTAAAGTATCTAACATTCCTTCATTATTCCAATCCTTTATAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550037" ref_strand="+" ref_description="SGN-E550037 [TUS-5-O10]">
      <seq>tcttcctcatttttgctaaaagttttattccttccaagctcttaatggattatacttatttattacgaaataataatgatttaataatcatctcgtctagtcaccactacagctttcttcttttattagttaccctaacagcgcctcaactttgtttactcccctaaacggccctcttgcctaccggtttcaaccttaggatgacatagtctgggcatactcattcagagaatatttctgtagtaaaccttctaaagatgcttattaaagtattattaagtcatgataaacaattataatcaacaagagattttcaggaataaataaaatttagctactcataaatttaatagtatatacctgattttgtagatttgtagcttcggatttctccatagttattagcttattttgttaactatctagctctgataccaattttggggtgcaagcgtaaagagagagtattcagaaagatgagagatgtaaggatgaaggtgtgttttatttatgaggaaagctcctctatttatacacataaattacaccgtcatactatttactttacataattggccgacaaactttttacatgattggcccgacaactatttactttacgacttttgtacatttgactttttcagccgacgcaagacgacaaaaataagaagactcttactttatacatatgcctgatattcaaccgaacaacaatacttatatacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="+" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="46934" stop="48267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47234" g_stop="47967" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="+" ref_id="SGN-E550037" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47234" e_stop="47967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATTCATTTTTGCTAAAAGTTTTATACCTTCAAAGCTCTTAATGGATTATAGTTATTTATTATGAAATAATAATGATTTAATAATCATCTTGTCTAGTCACTACTATAGCTTTCTTTTTTGATTAGTTACCCTAACAGCTCCTCAACTTTGTTTACTCCCCTAAACGGCCTTCTTGCCTACCGGTTTCAACCTTAGGATGACATAGTCTAGGCATACTTATTCAGAGAATATTTCTGTAGTAAACCTTCTAAAGATGTTTATTAGAACATTATTAAGTCATGACAAACAATTATAATCAACCAGAGTTTTTCAGGAATAAAT-TTATTTAGCTACTCAAAAATTTAAGAGAGTATACCTGATTTTGTATATTTGTAGCTTCAGATTTCTCCATAGTTATTAGCTTAATTTGTTAACTAGCTAGCTCTGATACGAATTTTAGGGTGGAAGCGCAAAGAGAGAGTATTCAGAAAGATGAGAGATGTAAGGATGAAGGTGTGTTTTATTTATGAGGAAAGCTCCTCTATTTATACACATAAATTACACCGTCATACTATTTACTTAAAATAATTGACCGACAAACTTTTTACATGATT-GACCGACAAACTATTTACTTTACAACTTTTGTACAATTGTCTTTTTTCAGCTGACGCAAGACGACAAAAATAAAAAGACTCTTTACTTTATACATATGGCTGATATTCAGCCGACACAACAATACATATAATACTTT</genome_strand>
        <mrna_strand>TCTTCCTCATTTTTGCTAAAAGTTTTATTCCTTCCAAGCTCTTAATGGATTATACTTATTTATTACGAAATAATAATGATTTAATAATCATCTCGTCTAGTCACCACTACAGCTTTCTTCTTTTATTAGTTACCCTAACAGCGCCTCAACTTTGTTTACTCCCCTAAACGGCCCTCTTGCCTACCGGTTTCAACCTTAGGATGACATAGTCTGGGCATACTCATTCAGAGAATATTTCTGTAGTAAACCTTCTAAAGATGCTTATTAAAGTATTATTAAGTCATGATAAACAATTATAATCAACAAGAGATTTTCAGGAATAAATAAAATTTAGCTACTCATAAATTTAATAGTATATACCTGATTTTGTAGATTTGTAGCTTCGGATTTCTCCATAGTTATTAGCTTATTTTGTTAACTATCTAGCTCTGATACCAATTTTGGGGTGCAAGCGTAAAGAGAGAGTATTCAGAAAGATGAGAGATGTAAGGATGAAGGTGTGTTTTATTTATGAGGAAAGCTCCTCTATTTATACACATAAATTACACCGTCATACTATTTACTTTACATAATTGGCCGACAAACTTTTTACATGATTGGCCCGAC-AACTATTTACTTTACGACTTTTGTACATTTGAC-TTTTTCAGCCGACGCAAGACGACAAAAATAAGAAGACTC-TTACTTTATACATATGCCTGATATTCAACCGA-ACAACAATACTTAT-ATACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376857" ref_strand="+" ref_description="SGN-E376857 [TUS-19-P13]">
      <seq>cttattcatttttgctaaaagttttattccttccaagctcttaatggattatacttatttattatgaaataataatgatttaataatcatctcgtctagtcaccactacagctttcttcttttattagttaccctaacagcgcctcaactttgtttactcccctaaacggccctcttgcctaccggtttcaaccttaggatgacatagtctgggcatactcattcagagaatatttctgtagtaaaccttctaaagatgcttattaaagtattattaagtcatgataaacaattataatcaacaagagattttcaggaataaataaaatttagctactcataaatttaatagtatatacctgattttgtagatttgtagcttcggatttctccatagttattagcttattttgttaactatctagctctgataccaattttggggtgcaagcgtaaagagagagtattcagaaagatgagagatgtaaggatgaaggtgtgttttatttatgaggaaagctcctctatttatacacataaattacaccgtcatactatttactttacataattggccgacaaacttttttacatgattggccgacaaactatttactttacgacttttgtacatttgacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="+" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="46935" stop="48176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47235" g_stop="47876" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="+" ref_id="SGN-E376857" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47235" e_stop="47876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTCATTTTTGCTAAAAGTTTTATACCTTCAAAGCTCTTAATGGATTATAGTTATTTATTATGAAATAATAATGATTTAATAATCATCTTGTCTAGTCACTACTATAGCTTTCTTTTTTGATTAGTTACCCTAACAGCTCCTCAACTTTGTTTACTCCCCTAAACGGCCTTCTTGCCTACCGGTTTCAACCTTAGGATGACATAGTCTAGGCATACTTATTCAGAGAATATTTCTGTAGTAAACCTTCTAAAGATGTTTATTAGAACATTATTAAGTCATGACAAACAATTATAATCAACCAGAGTTTTTCAGGAATAAAT-TTATTTAGCTACTCAAAAATTTAAGAGAGTATACCTGATTTTGTATATTTGTAGCTTCAGATTTCTCCATAGTTATTAGCTTAATTTGTTAACTAGCTAGCTCTGATACGAATTTTAGGGTGGAAGCGCAAAGAGAGAGTATTCAGAAAGATGAGAGATGTAAGGATGAAGGTGTGTTTTATTTATGAGGAAAGCTCCTCTATTTATACACATAAATTACACCGTCATACTATTTACTTAAAATAATTGACCGACAAAC-TTTTTACATGATTGACCGACAAACTATTTACTTTACAACTTTTGTACAATTGTCTTTTT</genome_strand>
        <mrna_strand>CTTATTCATTTTTGCTAAAAGTTTTATTCCTTCCAAGCTCTTAATGGATTATACTTATTTATTATGAAATAATAATGATTTAATAATCATCTCGTCTAGTCACCACTACAGCTTTCTTCTTTTATTAGTTACCCTAACAGCGCCTCAACTTTGTTTACTCCCCTAAACGGCCCTCTTGCCTACCGGTTTCAACCTTAGGATGACATAGTCTGGGCATACTCATTCAGAGAATATTTCTGTAGTAAACCTTCTAAAGATGCTTATTAAAGTATTATTAAGTCATGATAAACAATTATAATCAACAAGAGATTTTCAGGAATAAATAAAATTTAGCTACTCATAAATTTAATAGTATATACCTGATTTTGTAGATTTGTAGCTTCGGATTTCTCCATAGTTATTAGCTTATTTTGTTAACTATCTAGCTCTGATACCAATTTTGGGGTGCAAGCGTAAAGAGAGAGTATTCAGAAAGATGAGAGATGTAAGGATGAAGGTGTGTTTTATTTATGAGGAAAGCTCCTCTATTTATACACATAAATTACACCGTCATACTATTTACTTTACATAATTGGCCGACAAACTTTTTTACATGATTGGCCGACAAACTATTTACTTTACGACTTTTGTACATTTGACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232987" ref_strand="+" ref_description="SGN-E232987 [cLED-6-D21]">
      <seq>cttattcatttttgctaaaagttttattccttccaagctcttaatggattatacttatttattatgaaataataatgatttaataatcatctcgtctagtcaccactacagctttcttcttttattagttaccctaacagcgcctcaactttgtttactcccctaaacggccctcttgcctaccggtttcaaccttaggatgacatagtctgggcatactcattcagagaatatttctgtagtaaaccttctaaagatgcttattaaagtattattaagtcatgataaacaattataatcaacaagagattttcaggaataaataaaatttagctactcataaatttaatagtatatacctgattttgtagatttgtagcttcggatttctccatagttattagcttattttgttaactatctagctctgataccaattttggggtgcaagcgtaaagagagagtattcagaaagatgagagatgtaaggatgaaggtgtgttttatttatgaggaaagctcctctatttatacacataaattacaccgtcatactatttactttacataattggccgacaaactttttacatgattggccgacaaactatttactttacgacttttgtacatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="+" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="46935" stop="48169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47235" g_stop="47870" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="+" ref_id="SGN-E232987" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47235" e_stop="47870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTCATTTTTGCTAAAAGTTTTATACCTTCAAAGCTCTTAATGGATTATAGTTATTTATTATGAAATAATAATGATTTAATAATCATCTTGTCTAGTCACTACTATAGCTTTCTTTTTTGATTAGTTACCCTAACAGCTCCTCAACTTTGTTTACTCCCCTAAACGGCCTTCTTGCCTACCGGTTTCAACCTTAGGATGACATAGTCTAGGCATACTTATTCAGAGAATATTTCTGTAGTAAACCTTCTAAAGATGTTTATTAGAACATTATTAAGTCATGACAAACAATTATAATCAACCAGAGTTTTTCAGGAATAAAT-TTATTTAGCTACTCAAAAATTTAAGAGAGTATACCTGATTTTGTATATTTGTAGCTTCAGATTTCTCCATAGTTATTAGCTTAATTTGTTAACTAGCTAGCTCTGATACGAATTTTAGGGTGGAAGCGCAAAGAGAGAGTATTCAGAAAGATGAGAGATGTAAGGATGAAGGTGTGTTTTATTTATGAGGAAAGCTCCTCTATTTATACACATAAATTACACCGTCATACTATTTACTTAAAATAATTGACCGACAAACTTTTTACATGATTGACCGACAAACTATTTACTTTACAACTTTTGTACAATTGT</genome_strand>
        <mrna_strand>CTTATTCATTTTTGCTAAAAGTTTTATTCCTTCCAAGCTCTTAATGGATTATACTTATTTATTATGAAATAATAATGATTTAATAATCATCTCGTCTAGTCACCACTACAGCTTTCTTCTTTTATTAGTTACCCTAACAGCGCCTCAACTTTGTTTACTCCCCTAAACGGCCCTCTTGCCTACCGGTTTCAACCTTAGGATGACATAGTCTGGGCATACTCATTCAGAGAATATTTCTGTAGTAAACCTTCTAAAGATGCTTATTAAAGTATTATTAAGTCATGATAAACAATTATAATCAACAAGAGATTTTCAGGAATAAATAAAATTTAGCTACTCATAAATTTAATAGTATATACCTGATTTTGTAGATTTGTAGCTTCGGATTTCTCCATAGTTATTAGCTTATTTTGTTAACTATCTAGCTCTGATACCAATTTTGGGGTGCAAGCGTAAAGAGAGAGTATTCAGAAAGATGAGAGATGTAAGGATGAAGGTGTGTTTTATTTATGAGGAAAGCTCCTCTATTTATACACATAAATTACACCGTCATACTATTTACTTTACATAATTGGCCGACAAACTTTTTACATGATTGGCCGACAAACTATTTACTTTACGACTTTTGTACATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745032" ref_strand="+" ref_description="SGN-E745032 [GI|82754259]">
      <seq>caaaaacatgcggagctacgtcatacggttgatggaaaacagccagagatagaaggaaatgatgggaaactccggaaaacccataacaatgtttgttcagatacagctgcaggtacaagtaacagaactagtgaaaaaccaaaaaatacaaacttaaacgagttatttgcaaaaccatttacccaaaaatcacaaatgcagataccagcagaaccacaaacatcaacctatgcagtaagcctacaaaacgacaaaaaaagatataactatattacccaatcttacattgaaaacatatacaaaatccaaacatacctaaacctaaacccaagatctatacaaaaaaaaaatcccgaagaagattatataaccctgaaactacaaggatataacaaacttattgcacaacctaagactaaccccaacctagtaaaaacatgttataactacggactactaaatacagtatacacatataccggagaagagatagtaggaataccagaattacatagagcatttctaacatataaaagaattaccaaaggaaatttattctatataaaatgttatacagcaccagctgagatattatacgaagagataaaatcaccaatacaggtggtaaagataggattaacaaaagatatgattattccagaagagatagaaaaacaaaatgagataccaaaagtagaaatacctaatttttatgcaaataaaagaataattgatatagctacgattatacaagagctagcaaacaattatttaaatggcaatgctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="-" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="50619" stop="49230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50319" g_stop="49530" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="-" ref_id="SGN-E745032" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50319" e_stop="49530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACATGTGGAGCTACGTCGTACGGCAGACGGAAAACAACCAGAGATAGAAGGAGATGATGGGAAACTCCGGAAAACCCATAACAATGTTTGTTAAGATACAGCTGCAGGTACAAGTAAAAGAACTAGTGAAAAACCAAAAAACACAAACTTAAACCAGTTATTTGCAAAACCATTTACCCAAAAACCACAAATGCAAATACCAGCAGAACCACAAACATCAACCTATGCAGTAAGCCTGCAAAACGACAAAAAAATATATAACTATATTACCCAATCTTACATTGAAAACATATACAAAATCCAAACATATCTAAACCTAAACCCAAGATCTACACAAACCAAAAATCCCGAAGAAGATTATATAACCCAGAAACTACAAGGATATAACAAACTTGTTGCACAACCTAAGACCAACCCCAACCTAGTAAAAACATGTTATAACTACGGACTACTAAATATAGTATACACATATACCGGAGAAGAGATAGTAGGAATACCAGAATTACATAGAGCATTTCTAACATATAAAAGAATTACCAAAGGAAATTTATTCTATATAAAATGTTATACAGCACCAGCAGAGATATTATACGAAGAGATAAAATCACCAATACAGGTGGTAAAGATAGGATTAACAAAAGATATGATTATTCCAGAAGAGATAGAAAAACAAAATGAGACACCAAAAGTAGAAATACCTAATTTTTATGCAAATAAAAGAATAATTGGTATAGCTACGATTATATAAGAGCTAGCAAACAATTATTTAAATGGCAATGCTATTT</genome_strand>
        <mrna_strand>CAAAAACATGCGGAGCTACGTCATACGGTTGATGGAAAACAGCCAGAGATAGAAGGAAATGATGGGAAACTCCGGAAAACCCATAACAATGTTTGTTCAGATACAGCTGCAGGTACAAGTAACAGAACTAGTGAAAAACCAAAAAATACAAACTTAAACGAGTTATTTGCAAAACCATTTACCCAAAAATCACAAATGCAGATACCAGCAGAACCACAAACATCAACCTATGCAGTAAGCCTACAAAACGACAAAAAAAGATATAACTATATTACCCAATCTTACATTGAAAACATATACAAAATCCAAACATACCTAAACCTAAACCCAAGATCTATACAAAAAAAAAATCCCGAAGAAGATTATATAACCCTGAAACTACAAGGATATAACAAACTTATTGCACAACCTAAGACTAACCCCAACCTAGTAAAAACATGTTATAACTACGGACTACTAAATACAGTATACACATATACCGGAGAAGAGATAGTAGGAATACCAGAATTACATAGAGCATTTCTAACATATAAAAGAATTACCAAAGGAAATTTATTCTATATAAAATGTTATACAGCACCAGCTGAGATATTATACGAAGAGATAAAATCACCAATACAGGTGGTAAAGATAGGATTAACAAAAGATATGATTATTCCAGAAGAGATAGAAAAACAAAATGAGATACCAAAAGTAGAAATACCTAATTTTTATGCAAATAAAAGAATAATTGATATAGCTACGATTATACAAGAGCTAGCAAACAATTATTTAAATGGCAATGCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="-" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="54976" stop="53901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54677" g_stop="54201" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54677" e_stop="54201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACTGACACAAGAGGATTAATGAATA-TGAGTAAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGAAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTCATTTTATGATATTAC-TGG--TATATATTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTATTCTTCTTAATTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTTAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="+" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="54053" stop="61931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54353" g_stop="54688" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54353" e_stop="54688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATA-CCAGTAATATCATAAAATGAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTTCCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTTACTCATATTCATTAATCCTCTTGTGTCAGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTTGTAACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGAACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="-" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="54978" stop="54143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54678" g_stop="54441" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54678" e_stop="54441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACTGACACAAGAGGATTAATGAATA-TGAGTAAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGAAATTGTTAATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="+" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="58280" stop="59592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58580" g_stop="59292" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58580" e_stop="59292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTGTTGACAAATCGGCGGTAATAGCTAGCTAAACCAGCAAAACTCCTTGTTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTGGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTATCAATACCATTCTCAAATGCTCCTTATGTTTTTTCTTGCTCTTTGAGTATATTAGTATATCATCAATAAATACGATCAAAAAGAGGTCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCATTCGAAAAGGAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTAACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGAGGATGCACTTTGTATAATGAAGCCTTTGTTCAGTAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCCGTGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTCA-CAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="+" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="58280" stop="59475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58580" g_stop="59175" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58580" e_stop="59175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTGTTGACAAATCGGCGGTAATAGCTAGCTAAACCAGCAAAACTCCTTGTTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTGGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTATCAATACCATTCTCAAATGCTCCTTATGTTTTTTCTTGCTCTTTGAGTATATTAGTATATCATCAATAAATACGATCAAAAAGAGGTCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCATTCGAAAAGGAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTAACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="+" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="58280" stop="59405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58580" g_stop="59105" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58580" e_stop="59105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTGTTGACAAATCGGCGGTAATAGCTAGCTAAACCAGCAAAACTCCTTGTTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTGGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTATCAATACCATTCTCAAATGCTCCTTATGTTTTTTCTTGCTCTTTGAGTATATTAGTATATCATCAATAAATACGATCAAAAAGAGGTCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCATTCGAAAAGGAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="+" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="58351" stop="59629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58651" g_stop="59330" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58651" e_stop="59330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTGGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTATCAATACCATTCTCAAATGCTCCTTATGTTTTTTCTTGCTCTTTGAGTATATTAGTATATCATCAATAAATACGATCAAAAAGAGGTCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCATTCGAAAAGGAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTAACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGAGGATGCACTTTGTATAATGAAGCCTTTGTTCAGTAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGTGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="+" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="58351" stop="59309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58651" g_stop="59009" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58651" e_stop="59009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTGGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTATCAATACCATTCTCAAATGCTCCTTATGTTTTTTCTTGCTCTTTGAGTATATTAGTATATCATCAATAAATACGATCAAAAAGAGGTCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCATTCGAAAAGGAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="-" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="62589" stop="54223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62290" g_stop="61783" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61782" i_stop="61573" i_length="210">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61572" g_stop="61361" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="717" r_length="212" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="-" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62290" e_stop="61783"/>
          <exon e_start="61572" e_stop="61361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCGGTGGAGGTAGGTTATGG-TT-T-TTATGCTTTTCATAGTAAACTCTTAATAGCGAATGATATGTATTGGGTAGTATTGTAAACCCTTCTATGTGCTTAATTGTATGCATGCATGAACGTTATTGTATAATTGTGATTATATTAAGCATGATGATGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATAAATTGATGGAAGTAGAATTAGGGGACCGGCTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACAAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCAGGAACCGACACGTAAATTTAGGGAATTGGGTGTCACGAACCAACACATAGATTTAGGGGATCTAGTGTCACGAACCGACACGTAGATTTAGGAGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACTGACATGTAGATTTAGGGGATCGGGTGTCACAAACTGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGG-GTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGTTTAATGAATATGAGGAAGTGGAGTGTCACGTACCGACACAAAAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATT-GATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAG-ATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACAC..................................................................................................................................................................................................................GTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTAGGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002B09-1PptO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0002B09.1" temp_strand="+" temp_description="C04HBa0002B09.1  CU861450.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0002B09 sequenced_by:sanger upload_account_name:uk">
        <position start="63208" stop="63990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63508" g_stop="63684" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002B09.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002B09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63508" e_stop="63684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTCTCCTCCCATATAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGGAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="23468" PGL_stop="24196"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23468" e_stop="23814"/>
            <exon e_start="23891" e_stop="24196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.372" acc_prob="0.970" e_score="0.939"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="23468" e_stop="23814" e_length="347"/>
          </exon>
          <intron i_serial="1" don_prob="0.372" acc_prob="0.970">
            <gDNA_intron_boundary i_start="23815" i_stop="23890" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="23891" e_stop="24196" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23468" stop="23814"/>
              <exon start="23891" stop="24196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATGTTAGAAATGCTCTATGTAATTCTGGTATTCCTACCATCTCTTCTCCGGTATATGTGAATACTGTATTTAGTAGTCCGTAGTTATAACATGTTTTTACTAGGTTGGGTTGGTCTTAGGTAGTGCAATAAGTTTGTTATATCCTTGTAGTTTCTGGGTTATATAATCTTCTTCGGGATTTTTTGTTTGTGTAGATCTTGGGTTTAGGTTTAGGTATGTTTGGATTTTGTATATGTTTTCAATGTAAGATTGGCTAATATAGTTATATCTTTTTTTTCGTTTTGCAGGCTTACTGCATAGGTTGATGTTTGTGGTTCTGCTGGTATTTGCATTTGCGGTTTTTGG : CTGTATCTGAACAAACATTGTTATGGGTTTTCCGGAGTTTCCCATCATCTCCTTCTATCTCTGGCTGTTTTCCGTCTGCCGTACGACGTAGCTCTGCATGTTTTTGGTCATGCTGCTGACCGTTACCTTTCAGCTCCTTTACTTCTATTTCTATCTTTTCTACTTTTTGGCATAGATTTTTCATCATTGCCAGTAGATCTTTCATCATATCTTTTTCTTGAGAGGTAGTCTGCAATTAGATTTTCGTCAATTTTTATAATTTCAATTGTAAATGTAAAATTTAATATATTTAATATCAATCTTCTT</gDNA_template>
            <first_frame> I  C  *  K  C  S  M  *  F  W  Y  S  Y  H  L  F  S  G  I  C  E  Y  C  I  *  *  S  V  V  I  T  C  F  Y  *  V  G  L  V  L  G  S  A  I  S  L  L  Y  P  C  S  F  W  V  I  *  S  S  S  G  F  F  V  C  V  D  L  G  F  R  F  R  Y  V  W  I  L  Y  M  F  S  M  *  D  W  L  I  *  L  Y  L  F  F  R  F  A  G  L  L  H  R  L  M  F  V  V  L  L  V  F  A  F  A  V  F  G :   C  I  *  T  N  I  V  M  G  F  P  E  F  P  I  I  S  F  Y  L  W  L  F  S  V  C  R  T  T  *  L  C  M  F  L  V  M  L  L  T  V  T  F  Q  L  L  Y  F  Y  F  Y  L  F  Y  F  L  A  *  I  F  H  H  C  Q  *  I  F  H  H  I  F  F  L  R  G  S  L  Q  L  D  F  R  Q  F  L  *  F  Q  L  *  M  *  N  L  I  Y  L  I  S  I  F   </first_frame>
            <second_frame>  Y  V  R  N  A  L  C  N  S  G  I  P  T  I  S  S  P  V  Y  V  N  T  V  F  S  S  P  *  L  *  H  V  F  T  R  L  G  W  S  *  V  V  Q  *  V  C  Y  I  L  V  V  S  G  L  Y  N  L  L  R  D  F  L  F  V  *  I  L  G  L  G  L  G  M  F  G  F  C  I  C  F  Q  C  K  I  G  *  Y  S  Y  I  F  F  F  V  L  Q  A  Y  C  I  G  *  C  L  W  F  C  W  Y  L  H  L  R  F  L   : A  V  S  E  Q  T  L  L  W  V  F  R  S  F  P  S  S  P  S  I  S  G  C  F  P  S  A  V  R  R  S  S  A  C  F  W  S  C  C  *  P  L  P  F  S  S  F  T  S  I  S  I  F  S  T  F  W  H  R  F  F  I  I  A  S  R  S  F  I  I  S  F  S  *  E  V  V  C  N  *  I  F  V  N  F  Y  N  F  N  C  K  C  K  I  *  Y  I  *  Y  Q  S  S  </second_frame>
            <third_frame>   M  L  E  M  L  Y  V  I  L  V  F  L  P  S  L  L  R  Y  M  *  I  L  Y  L  V  V  R  S  Y  N  M  F  L  L  G  W  V  G  L  R  *  C  N  K  F  V  I  S  L  *  F  L  G  Y  I  I  F  F  G  I  F  C  L  C  R  S  W  V  *  V  *  V  C  L  D  F  V  Y  V  F  N  V  R  L  A  N  I  V  I  S  F  F  S  F  C  R  L  T  A  *  V  D  V  C  G  S  A  G  I  C  I  C  G  F  W  :  L  Y  L  N  K  H  C  Y  G  F  S  G  V  S  H  H  L  L  L  S  L  A  V  F  R  L  P  Y  D  V  A  L  H  V  F  G  H  A  A  D  R  Y  L  S  A  P  L  L  L  F  L  S  F  L  L  F  G  I  D  F  S  S  L  P  V  D  L  S  S  Y  L  F  L  E  R  *  S  A  I  R  F  S  S  I  F  I  I  S  I  V  N  V  K  F  N  I  F  N  I  N  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002B09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23770" stop="23814"/>
                    <exon start="23891" stop="24118"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDVCGSAGICICGFWLYLNKHCYGFSGVSHHLLLSLAVFRLPYDVALHVFGHAADRYLSAPLLLFLSFLLFGIDFSSLPVDLSSYLFLER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="27614" PGL_stop="27312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27614" e_stop="27312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="27614" e_stop="27312" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27614" stop="27312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGGTCTGAGCCCCCTCTCTAGTACGAGAGTCATGTGGTGTGGTAGTCGCTCCACCACCATGAGAAAAGCCCTCTAGCACACTTAACACCCTCAATAGCGTATCCTGAAGCAAAGGTGTGACTACGGGATCTGGAGGAACCTGGTCCTCTCTCTCATCAATCTGAGGTTCGGTAGAGATCTCTCTAGCACTACCTCTCAATGGTGCTGCTCCACGTCCACGACCTCTGGCTACTCTCGTACTACTAGAACGACCTCTAGCTCGAGATCTACCCCTACCCCTAGCTGGGGCCTCAACATTTGC</gDNA_template>
            <first_frame> L  G  L  S  P  L  S  S  T  R  V  M  W  C  G  S  R  S  T  T  M  R  K  A  L  *  H  T  *  H  P  Q  *  R  I  L  K  Q  R  C  D  Y  G  I  W  R  N  L  V  L  S  L  I  N  L  R  F  G  R  D  L  S  S  T  T  S  Q  W  C  C  S  T  S  T  T  S  G  Y  S  R  T  T  R  T  T  S  S  S  R  S  T  P  T  P  S  W  G  L  N  I  C </first_frame>
            <second_frame>  W  V  *  A  P  S  L  V  R  E  S  C  G  V  V  V  A  P  P  P  *  E  K  P  S  S  T  L  N  T  L  N  S  V  S  *  S  K  G  V  T  T  G  S  G  G  T  W  S  S  L  S  S  I  *  G  S  V  E  I  S  L  A  L  P  L  N  G  A  A  P  R  P  R  P  L  A  T  L  V  L  L  E  R  P  L  A  R  D  L  P  L  P  L  A  G  A  S  T  F   </second_frame>
            <third_frame>   G  S  E  P  P  L  *  Y  E  S  H  V  V  W  *  S  L  H  H  H  E  K  S  P  L  A  H  L  T  P  S  I  A  Y  P  E  A  K  V  *  L  R  D  L  E  E  P  G  P  L  S  H  Q  S  E  V  R  *  R  S  L  *  H  Y  L  S  M  V  L  L  H  V  H  D  L  W  L  L  S  Y  Y  *  N  D  L  *  L  E  I  Y  P  Y  P  *  L  G  P  Q  H  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002B09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27515" stop="27312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RILKQRCDYGIWRNLVLSLINLRFGRDLSSTTSQWCCSTSTTSGYSRTTRTTSSSRSTPTPSWGLNIC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="28460" PGL_stop="28033"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28460" e_stop="28033"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="28460" e_stop="28033" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28460" stop="28033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAATCGTACGGCTCTTACCCGAGCTATAAGAACCCCTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTATGATCCCCTACCTCCAGATGAGGCACCATGAAACTGTCCTGATATACGGGCTCTTTTAGGGTCCCCAAACTCCTCTCTTTCCATCAATTCCGCCTCTTTGGCGGCGCTCACAATGGACTTTAAAGAAGTCCCCTCCCTAGATGTCCGAAACACAGTTGACCTAATAGAGAAAGTCAATCCCCTCACAAATCTGCGGATCCTCTCTGTCTCATTTGGAATAATGGCCAACGCATACCTAGACAACTGGCAAAAACGCGCCTCATACTCTGTAACCGATAAACCATCCTTTCTCAGACTCTCAAACGTCAAGC</gDNA_template>
            <first_frame> V  N  R  T  A  L  T  R  A  I  R  T  P  R  C  L  A  T  L  K  C  R  H  R  C  M  N  R  S  P  L  L  K  R  T  T  H  S  L  *  S  P  T  S  R  *  G  T  M  K  L  S  *  Y  T  G  S  F  R  V  P  K  L  L  S  F  H  Q  F  R  L  F  G  G  A  H  N  G  L  *  R  S  P  L  P  R  C  P  K  H  S  *  P  N  R  E  S  Q  S  P  H  K  S  A  D  P  L  C  L  I  W  N  N  G  Q  R  I  P  R  Q  L  A  K  T  R  L  I  L  C  N  R  *  T  I  L  S  Q  T  L  K  R  Q   </first_frame>
            <second_frame>  *  I  V  R  L  L  P  E  L  *  E  P  L  D  V  W  P  P  S  N  V  G  I  D  A  *  I  G  P  R  C  *  K  E  P  L  T  L  Y  D  P  L  P  P  D  E  A  P  *  N  C  P  D  I  R  A  L  L  G  S  P  N  S  S  L  S  I  N  S  A  S  L  A  A  L  T  M  D  F  K  E  V  P  S  L  D  V  R  N  T  V  D  L  I  E  K  V  N  P  L  T  N  L  R  I  L  S  V  S  F  G  I  M  A  N  A  Y  L  D  N  W  Q  K  R  A  S  Y  S  V  T  D  K  P  S  F  L  R  L  S  N  V  K  </second_frame>
            <third_frame>   E  S  Y  G  S  Y  P  S  Y  K  N  P  *  M  S  G  H  P  Q  M  S  A  *  M  H  E  *  V  P  A  A  E  K  N  H  S  L  S  M  I  P  Y  L  Q  M  R  H  H  E  T  V  L  I  Y  G  L  F  *  G  P  Q  T  P  L  F  P  S  I  P  P  L  W  R  R  S  Q  W  T  L  K  K  S  P  P  *  M  S  E  T  Q  L  T  *  *  R  K  S  I  P  S  Q  I  C  G  S  S  L  S  H  L  E  *  W  P  T  H  T  *  T  T  G  K  N  A  P  H  T  L  *  P  I  N  H  P  F  S  D  S  Q  T  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002B09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28312" stop="28034"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NCPDIRALLGSPNSSLSINSASLAALTMDFKEVPSLDVRNTVDLIEKVNPLTNLRILSVSFGIMANAYLDNWQKRASYSVTDKPSFLRLSNVK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="30591" PGL_stop="31178"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30591" e_stop="31178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="30591" e_stop="31178" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30591" stop="31178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTATTGAGGAAAGACCATTGGCTAGAGATGTTCAATTATTAGCTAACAGTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGAATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCGAGCAGATTCGTGTACACCAGTTTGATGATGTAAAATTATGTCTCATTCGAGACAAAGTATTGAGTGGGGAAGCTAAGGAGGCGGTCCTTGATTCTGATGGTGTCTTACGGATCGGAGGCAGGATTTGTGTGCCTAAGACAGGCGATTTGATTAGATTGATTCTTGAGGAGGCCCATTGTTCTCGGTATTCCATCCATCCTGGAGCGGCGAAGATGTATCATGATCTGAGTCAGCATTACTTGTGGTGTGGGATGAAGAGAGATATTTCAGACTTTTTTTCGAGGTGTTTGACTTGCCAGCAGGTCAAGTGTGAGCACCAGCGGCCCGGGGGTGTATTTTAGAGGATGCCTATTCCTACTTGGAAGCGGGAGCGGATTACTA</gDNA_template>
            <first_frame> F  C  I  I  R  G  R  P  M  L  W  P  M  L  *  V  G  R  L  I  A  W  G  V  L  H  L  L  V  L  R  K  D  H  W  L  E  M  F  N  Y  *  L  T  V  L  S  D  Y  R  S  Q  R  R  V  M  E  *  L  L  L  L  R  L  D  L  L  *  S  S  R  F  V  Y  T  S  L  M  M  *  N  Y  V  S  F  E  T  K  Y  *  V  G  K  L  R  R  R  S  L  I  L  M  V  S  Y  G  S  E  A  G  F  V  C  L  R  Q  A  I  *  L  D  *  F  L  R  R  P  I  V  L  G  I  P  S  I  L  E  R  R  R  C  I  M  I  *  V  S  I  T  C  G  V  G  *  R  E  I  F  Q  T  F  F  R  G  V  *  L  A  S  R  S  S  V  S  T  S  G  P  G  V  Y  F  R  G  C  L  F  L  L  G  S  G  S  G  L  L </first_frame>
            <second_frame>  S  V  S  S  G  E  G  Q  C  C  G  R  C  F  E  *  E  D  S  *  H  G  E  S  C  I  S  *  Y  *  G  K  T  I  G  *  R  C  S  I  I  S  *  Q  S  C  P  I  T  D  L  R  G  E  *  W  N  D  C  F  Y  *  G  S  I  F  F  S  R  A  D  S  C  T  P  V  *  *  C  K  I  M  S  H  S  R  Q  S  I  E  W  G  S  *  G  G  G  P  *  F  *  W  C  L  T  D  R  R  Q  D  L  C  A  *  D  R  R  F  D  *  I  D  S  *  G  G  P  L  F  S  V  F  H  P  S  W  S  G  E  D  V  S  *  S  E  S  A  L  L  V  V  W  D  E  E  R  Y  F  R  L  F  F  E  V  F  D  L  P  A  G  Q  V  *  A  P  A  A  R  G  C  I  L  E  D  A  Y  S  Y  L  E  A  G  A  D  Y   </second_frame>
            <third_frame>   L  Y  H  P  G  K  A  N  V  V  A  D  A  L  S  R  K  T  H  S  M  G  S  L  A  S  L  S  I  E  E  R  P  L  A  R  D  V  Q  L  L  A  N  S  L  V  R  L  Q  I  S  E  E  S  D  G  M  I  A  F  I  E  A  R  S  S  L  V  E  Q  I  R  V  H  Q  F  D  D  V  K  L  C  L  I  R  D  K  V  L  S  G  E  A  K  E  A  V  L  D  S  D  G  V  L  R  I  G  G  R  I  C  V  P  K  T  G  D  L  I  R  L  I  L  E  E  A  H  C  S  R  Y  S  I  H  P  G  A  A  K  M  Y  H  D  L  S  Q  H  Y  L  W  C  G  M  K  R  D  I  S  D  F  F  S  R  C  L  T  C  Q  Q  V  K  C  E  H  Q  R  P  G  G  V  F  *  R  M  P  I  P  T  W  K  R  E  R  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002B09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30593" stop="31138"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYHPGKANVVADALSRKTHSMGSLASLSIEERPLARDVQLLANSLVRLQISEESDGMIAFIEARSSLVEQIRVHQFDDVKLCLIRDKVLSGEAKEAVLDSDGVLRIGGRICVPKTGDLIRLILEEAHCSRYSIHPGAAKMYHDLSQHYLWCGMKRDISDFFSRCLTCQQVKCEHQRPGGVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="45129" PGL_stop="45906"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45129" e_stop="45906"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="45129" e_stop="45906" e_length="778"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45129" stop="45906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736427" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATTTTCCGTCTATGATGTGTTCTTTTTAACTAACTACATAGTATTCTTCTTTTTGTCTTTTAAACCAGTTTTTTAGTATAGGTATGTCAAGTATTTTTTCAACACTTAAATCTAATTCTTTTCCTTTTATTTGTTCAAAAAGTGTACTATCAAATATAATTTTTTGGAGTGATGATTCTTCATCTTCATAATTCTCTTTAGATATTATTTCGTTTTCAGACATTATATTTCTTCTTCTTCTATTTCATTATCTTCTTCTCCATTTTCAGTTTCTATATTCTGATACTTCATATATACTATCATTTTCACTTAATTCATAGTCTATGTATTCTAGTTGCATATATTCGTTTTCATCTATAACTACTTCTGCAATTTGTTATCTTTTTGGATTTTTAGGTAATTTACAGTCTTTAGCTATGCGTCCTATCTTTCCGCAATTATAACAAGTACATTGAGATTTCTTTCTTTTTGGTCTATATGGTCTTTTCATTTTATAGTTTTTTACATAATACCTTCGTCTTGGTTGTTTATATTTATACTTAGTTTTATTTTTTCTATAATTTTTATATCTTCTAGATTTTTGTTTTTTATTTGTACACCCAAACTGTGGTGCTATTTTATTTTTACAACATGATAAATTTTTATTTAGTACTTTTTCCATTTTCCATTTTTCTTTTTGATTTTCACATAATTGTGTAAACCACTGAGATAGAAAATTTATTCTAGCTCCTAAAGTATCTACCATTCCTTCATTATTCCAATCCTTTATTATTTTA</gDNA_template>
            <first_frame> I  F  S  V  Y  D  V  F  F  L  T  N  Y  I  V  F  F  F  L  S  F  K  P  V  F  *  Y  R  Y  V  K  Y  F  F  N  T  *  I  *  F  F  S  F  Y  L  F  K  K  C  T  I  K  Y  N  F  L  E  *  *  F  F  I  F  I  I  L  F  R  Y  Y  F  V  F  R  H  Y  I  S  S  S  S  I  S  L  S  S  S  P  F  S  V  S  I  F  *  Y  F  I  Y  T  I  I  F  T  *  F  I  V  Y  V  F  *  L  H  I  F  V  F  I  Y  N  Y  F  C  N  L  L  S  F  W  I  F  R  *  F  T  V  F  S  Y  A  S  Y  L  S  A  I  I  T  S  T  L  R  F  L  S  F  W  S  I  W  S  F  H  F  I  V  F  Y  I  I  P  S  S  W  L  F  I  F  I  L  S  F  I  F  S  I  I  F  I  S  S  R  F  L  F  F  I  C  T  P  K  L  W  C  Y  F  I  F  T  T  *  *  I  F  I  *  Y  F  F  H  F  P  F  F  F  L  I  F  T  *  L  C  K  P  L  R  *  K  I  Y  S  S  S  *  S  I  Y  H  S  F  I  I  P  I  L  Y  Y  F  </first_frame>
            <second_frame>  Y  F  P  S  M  M  C  S  F  *  L  T  T  *  Y  S  S  F  C  L  L  N  Q  F  F  S  I  G  M  S  S  I  F  S  T  L  K  S  N  S  F  P  F  I  C  S  K  S  V  L  S  N  I  I  F  W  S  D  D  S  S  S  S  *  F  S  L  D  I  I  S  F  S  D  I  I  F  L  L  L  L  F  H  Y  L  L  L  H  F  Q  F  L  Y  S  D  T  S  Y  I  L  S  F  S  L  N  S  *  S  M  Y  S  S  C  I  Y  S  F  S  S  I  T  T  S  A  I  C  Y  L  F  G  F  L  G  N  L  Q  S  L  A  M  R  P  I  F  P  Q  L  *  Q  V  H  *  D  F  F  L  F  G  L  Y  G  L  F  I  L  *  F  F  T  *  Y  L  R  L  G  C  L  Y  L  Y  L  V  L  F  F  L  *  F  L  Y  L  L  D  F  C  F  L  F  V  H  P  N  C  G  A  I  L  F  L  Q  H  D  K  F  L  F  S  T  F  S  I  F  H  F  S  F  *  F  S  H  N  C  V  N  H  *  D  R  K  F  I  L  A  P  K  V  S  T  I  P  S  L  F  Q  S  F  I  I  L </second_frame>
            <third_frame>   I  F  R  L  *  C  V  L  F  N  *  L  H  S  I  L  L  F  V  F  *  T  S  F  L  V  *  V  C  Q  V  F  F  Q  H  L  N  L  I  L  F  L  L  F  V  Q  K  V  Y  Y  Q  I  *  F  F  G  V  M  I  L  H  L  H  N  S  L  *  I  L  F  R  F  Q  T  L  Y  F  F  F  F  Y  F  I  I  F  F  S  I  F  S  F  Y  I  L  I  L  H  I  Y  Y  H  F  H  L  I  H  S  L  C  I  L  V  A  Y  I  R  F  H  L  *  L  L  L  Q  F  V  I  F  L  D  F  *  V  I  Y  S  L  *  L  C  V  L  S  F  R  N  Y  N  K  Y  I  E  I  S  F  F  L  V  Y  M  V  F  S  F  Y  S  F  L  H  N  T  F  V  L  V  V  Y  I  Y  T  *  F  Y  F  F  Y  N  F  Y  I  F  *  I  F  V  F  Y  L  Y  T  Q  T  V  V  L  F  Y  F  Y  N  M  I  N  F  Y  L  V  L  F  P  F  S  I  F  L  F  D  F  H  I  I  V  *  T  T  E  I  E  N  L  F  *  L  L  K  Y  L  P  F  L  H  Y  S  N  P  L  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002B09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45531" stop="45764"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTVFSYASYLSAIITSTLRFLSFWSIWSFHFIVFYIIPSSWLFIFILSFIFSIIFISSRFLFFICTPKLWCYFIFTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="47234" PGL_stop="47967"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47234" e_stop="47967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="47234" e_stop="47967" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47234" stop="47967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47235" stop="47876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47235" stop="47870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTATTCATTTTTGCTAAAAGTTTTATACCTTCAAAGCTCTTAATGGATTATAGTTATTTATTATGAAATAATAATGATTTAATAATCATCTTGTCTAGTCACTACTATAGCTTTCTTTTTTGATTAGTTACCCTAACAGCTCCTCAACTTTGTTTACTCCCCTAAACGGCCTTCTTGCCTACCGGTTTCAACCTTAGGATGACATAGTCTAGGCATACTTATTCAGAGAATATTTCTGTAGTAAACCTTCTAAAGATGTTTATTAGAACATTATTAAGTCATGACAAACAATTATAATCAACCAGAGTTTTTCAGGAATAAATTTATTTAGCTACTCAAAAATTTAAGAGAGTATACCTGATTTTGTATATTTGTAGCTTCAGATTTCTCCATAGTTATTAGCTTAATTTGTTAACTAGCTAGCTCTGATACGAATTTTAGGGTGGAAGCGCAAAGAGAGAGTATTCAGAAAGATGAGAGATGTAAGGATGAAGGTGTGTTTTATTTATGAGGAAAGCTCCTCTATTTATACACATAAATTACACCGTCATACTATTTACTTAAAATAATTGACCGACAAACTTTTTACATGATTGACCGACAAACTATTTACTTTACAACTTTTGTACAATTGTCTTTTTTCAGCTGACGCAAGACGACAAAAATAAAAAGACTCTTTACTTTATACATATGGCTGATATTCAGCCGACACAACAATACATATAATACTTT</gDNA_template>
            <first_frame> S  Y  S  F  L  L  K  V  L  Y  L  Q  S  S  *  W  I  I  V  I  Y  Y  E  I  I  M  I  *  *  S  S  C  L  V  T  T  I  A  F  F  F  D  *  L  P  *  Q  L  L  N  F  V  Y  S  P  K  R  P  S  C  L  P  V  S  T  L  G  *  H  S  L  G  I  L  I  Q  R  I  F  L  *  *  T  F  *  R  C  L  L  E  H  Y  *  V  M  T  N  N  Y  N  Q  P  E  F  F  R  N  K  F  I  *  L  L  K  N  L  R  E  Y  T  *  F  C  I  F  V  A  S  D  F  S  I  V  I  S  L  I  C  *  L  A  S  S  D  T  N  F  R  V  E  A  Q  R  E  S  I  Q  K  D  E  R  C  K  D  E  G  V  F  Y  L  *  G  K  L  L  Y  L  Y  T  *  I  T  P  S  Y  Y  L  L  K  I  I  D  R  Q  T  F  Y  M  I  D  R  Q  T  I  Y  F  T  T  F  V  Q  L  S  F  F  S  *  R  K  T  T  K  I  K  R  L  F  T  L  Y  I  W  L  I  F  S  R  H  N  N  T  Y  N  T   </first_frame>
            <second_frame>  L  I  H  F  C  *  K  F  Y  T  F  K  A  L  N  G  L  *  L  F  I  M  K  *  *  *  F  N  N  H  L  V  *  S  L  L  *  L  S  F  L  I  S  Y  P  N  S  S  S  T  L  F  T  P  L  N  G  L  L  A  Y  R  F  Q  P  *  D  D  I  V  *  A  Y  L  F  R  E  Y  F  C  S  K  P  S  K  D  V  Y  *  N  I  I  K  S  *  Q  T  I  I  I  N  Q  S  F  S  G  I  N  L  F  S  Y  S  K  I  *  E  S  I  P  D  F  V  Y  L  *  L  Q  I  S  P  *  L  L  A  *  F  V  N  *  L  A  L  I  R  I  L  G  W  K  R  K  E  R  V  F  R  K  M  R  D  V  R  M  K  V  C  F  I  Y  E  E  S  S  S  I  Y  T  H  K  L  H  R  H  T  I  Y  L  K  *  L  T  D  K  L  F  T  *  L  T  D  K  L  F  T  L  Q  L  L  Y  N  C  L  F  S  A  D  A  R  R  Q  K  *  K  D  S  L  L  Y  T  Y  G  *  Y  S  A  D  T  T  I  H  I  I  L  </second_frame>
            <third_frame>   L  F  I  F  A  K  S  F  I  P  S  K  L  L  M  D  Y  S  Y  L  L  *  N  N  N  D  L  I  I  I  L  S  S  H  Y  Y  S  F  L  F  *  L  V  T  L  T  A  P  Q  L  C  L  L  P  *  T  A  F  L  P  T  G  F  N  L  R  M  T  *  S  R  H  T  Y  S  E  N  I  S  V  V  N  L  L  K  M  F  I  R  T  L  L  S  H  D  K  Q  L  *  S  T  R  V  F  Q  E  *  I  Y  L  A  T  Q  K  F  K  R  V  Y  L  I  L  Y  I  C  S  F  R  F  L  H  S  Y  *  L  N  L  L  T  S  *  L  *  Y  E  F  *  G  G  S  A  K  R  E  Y  S  E  R  *  E  M  *  G  *  R  C  V  L  F  M  R  K  A  P  L  F  I  H  I  N  Y  T  V  I  L  F  T  *  N  N  *  P  T  N  F  L  H  D  *  P  T  N  Y  L  L  Y  N  F  C  T  I  V  F  F  Q  L  T  Q  D  D  K  N  K  K  T  L  Y  F  I  H  M  A  D  I  Q  P  T  Q  Q  Y  I  *  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0002B09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="50319" PGL_stop="49530"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50319" e_stop="49530"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="50319" e_stop="49530" e_length="790"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50319" stop="49530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745032" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAACATGTGGAGCTACGTCGTACGGCAGACGGAAAACAACCAGAGATAGAAGGAGATGATGGGAAACTCCGGAAAACCCATAACAATGTTTGTTAAGATACAGCTGCAGGTACAAGTAAAAGAACTAGTGAAAAACCAAAAAACACAAACTTAAACCAGTTATTTGCAAAACCATTTACCCAAAAACCACAAATGCAAATACCAGCAGAACCACAAACATCAACCTATGCAGTAAGCCTGCAAAACGACAAAAAAATATATAACTATATTACCCAATCTTACATTGAAAACATATACAAAATCCAAACATATCTAAACCTAAACCCAAGATCTACACAAACCAAAAATCCCGAAGAAGATTATATAACCCAGAAACTACAAGGATATAACAAACTTGTTGCACAACCTAAGACCAACCCCAACCTAGTAAAAACATGTTATAACTACGGACTACTAAATATAGTATACACATATACCGGAGAAGAGATAGTAGGAATACCAGAATTACATAGAGCATTTCTAACATATAAAAGAATTACCAAAGGAAATTTATTCTATATAAAATGTTATACAGCACCAGCAGAGATATTATACGAAGAGATAAAATCACCAATACAGGTGGTAAAGATAGGATTAACAAAAGATATGATTATTCCAGAAGAGATAGAAAAACAAAATGAGACACCAAAAGTAGAAATACCTAATTTTTATGCAAATAAAAGAATAATTGGTATAGCTACGATTATATAAGAGCTAGCAAACAATTATTTAAATGGCAATGCTATTT</gDNA_template>
            <first_frame> Q  K  H  V  E  L  R  R  T  A  D  G  K  Q  P  E  I  E  G  D  D  G  K  L  R  K  T  H  N  N  V  C  *  D  T  A  A  G  T  S  K  R  T  S  E  K  P  K  N  T  N  L  N  Q  L  F  A  K  P  F  T  Q  K  P  Q  M  Q  I  P  A  E  P  Q  T  S  T  Y  A  V  S  L  Q  N  D  K  K  I  Y  N  Y  I  T  Q  S  Y  I  E  N  I  Y  K  I  Q  T  Y  L  N  L  N  P  R  S  T  Q  T  K  N  P  E  E  D  Y  I  T  Q  K  L  Q  G  Y  N  K  L  V  A  Q  P  K  T  N  P  N  L  V  K  T  C  Y  N  Y  G  L  L  N  I  V  Y  T  Y  T  G  E  E  I  V  G  I  P  E  L  H  R  A  F  L  T  Y  K  R  I  T  K  G  N  L  F  Y  I  K  C  Y  T  A  P  A  E  I  L  Y  E  E  I  K  S  P  I  Q  V  V  K  I  G  L  T  K  D  M  I  I  P  E  E  I  E  K  Q  N  E  T  P  K  V  E  I  P  N  F  Y  A  N  K  R  I  I  G  I  A  T  I  I  *  E  L  A  N  N  Y  L  N  G  N  A  I  </first_frame>
            <second_frame>  K  N  M  W  S  Y  V  V  R  Q  T  E  N  N  Q  R  *  K  E  M  M  G  N  S  G  K  P  I  T  M  F  V  K  I  Q  L  Q  V  Q  V  K  E  L  V  K  N  Q  K  T  Q  T  *  T  S  Y  L  Q  N  H  L  P  K  N  H  K  C  K  Y  Q  Q  N  H  K  H  Q  P  M  Q  *  A  C  K  T  T  K  K  Y  I  T  I  L  P  N  L  T  L  K  T  Y  T  K  S  K  H  I  *  T  *  T  Q  D  L  H  K  P  K  I  P  K  K  I  I  *  P  R  N  Y  K  D  I  T  N  L  L  H  N  L  R  P  T  P  T  *  *  K  H  V  I  T  T  D  Y  *  I  *  Y  T  H  I  P  E  K  R  *  *  E  Y  Q  N  Y  I  E  H  F  *  H  I  K  E  L  P  K  E  I  Y  S  I  *  N  V  I  Q  H  Q  Q  R  Y  Y  T  K  R  *  N  H  Q  Y  R  W  *  R  *  D  *  Q  K  I  *  L  F  Q  K  R  *  K  N  K  M  R  H  Q  K  *  K  Y  L  I  F  M  Q  I  K  E  *  L  V  *  L  R  L  Y  K  S  *  Q  T  I  I  *  M  A  M  L  F </second_frame>
            <third_frame>   K  T  C  G  A  T  S  Y  G  R  R  K  T  T  R  D  R  R  R  *  W  E  T  P  E  N  P  *  Q  C  L  L  R  Y  S  C  R  Y  K  *  K  N  *  *  K  T  K  K  H  K  L  K  P  V  I  C  K  T  I  Y  P  K  T  T  N  A  N  T  S  R  T  T  N  I  N  L  C  S  K  P  A  K  R  Q  K  N  I  *  L  Y  Y  P  I  L  H  *  K  H  I  Q  N  P  N  I  S  K  P  K  P  K  I  Y  T  N  Q  K  S  R  R  R  L  Y  N  P  E  T  T  R  I  *  Q  T  C  C  T  T  *  D  Q  P  Q  P  S  K  N  M  L  *  L  R  T  T  K  Y  S  I  H  I  Y  R  R  R  D  S  R  N  T  R  I  T  *  S  I  S  N  I  *  K  N  Y  Q  R  K  F  I  L  Y  K  M  L  Y  S  T  S  R  D  I  I  R  R  D  K  I  T  N  T  G  G  K  D  R  I  N  K  R  Y  D  Y  S  R  R  D  R  K  T  K  *  D  T  K  S  R  N  T  *  F  L  C  K  *  K  N  N  W  Y  S  Y  D  Y  I  R  A  S  K  Q  L  F  K  W  Q  C  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002B09.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50220" stop="49567"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTAAGTSKRTSEKPKNTNLNQLFAKPFTQKPQMQIPAEPQTSTYAVSLQNDKKIYNYITQSYIENIYKIQTYLNLNPRSTQTKNPEEDYITQKLQGYNKLVAQPKTNPNLVKTCYNYGLLNIVYTYTGEEIVGIPELHRAFLTYKRITKGNLFYIKCYTAPAEILYEEIKSPIQVVKIGLTKDMIIPEEIEKQNETPKVEIPNFYANKRIIGIATII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="54678" PGL_stop="54201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54678" e_stop="54201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="54678" e_stop="54201" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54678" stop="54441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54677" stop="54201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACAAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACTGACACAAGAGGATTAATGAATATGAGTAAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGAAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTCATTTTATGATATTACTGGTATATATTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTATTCTTCTTAATTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTTAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> L  Q  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  S  K  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  H  F  M  I  L  L  V  Y  I  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  I  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  </first_frame>
            <second_frame>  Y  K  P  T  R  R  F  R  G  S  E  C  H  V  L  T  Q  E  D  *  *  I  *  V  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  E  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  F  I  L  *  Y  Y  W  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  Y  S  S  *  L  F  V  E  C  S  K  R  A  I  V  F  N  L  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G  D  R  S  V  T  Y  *  H  K  R  I  N  E  Y  E  *  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  K  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  S  F  Y  D  I  T  G  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  I  L  L  N  Y  L  W  S  A  A  N  V  P  S  S  S  T  *  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002B09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54456" stop="54223"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSTCCCYMLSIIVHFMILLVYIVFYFELADDIYSVPVFCTDPYFYVFFLIICGVQQTCHRLQLNSNSSQSYYIGNSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="54353" PGL_stop="54688"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54353" e_stop="54688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="54353" e_stop="54688" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54353" stop="54688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATACCAGTAATATCATAAAATGAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATTAACAATTTCCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTTACTCATATTCATTAATCCTCTTGTGTCAGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTTGTAACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  T  I  Y  T  S  N  I  I  K  *  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  F  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  L  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  C  N  T  R  S </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  K  Q  Y  I  P  V  I  S  *  N  E  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  F  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  Y  S  Y  S  L  I  L  L  C  Q  Y  V  T  L  R  S  P  K  S  T  C  R  F  V  T  P  D   </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  N  N  I  Y  Q  *  Y  H  K  M  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  L  T  I  S  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  T  H  I  H  *  S  S  C  V  S  T  *  H  S  D  P  L  N  L  R  V  G  L  *  H  P  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0002B09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="58580" PGL_stop="59330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58580" e_stop="59330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="58580" e_stop="59330" e_length="751"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58580" stop="59292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58580" stop="59175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58580" stop="59105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58651" stop="59330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58651" stop="59009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCTGTTGACAAATCGGCGGTAATAGCTAGCTAAACCAGCAAAACTCCTTGTTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTGGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTATCAATACCATTCTCAAATGCTCCTTATGTTTTTTCTTGCTCTTTGAGTATATTAGTATATCATCAATAAATACGATCAAAAAGAGGTCCAAATATGGCTTAAAAATCCCATTCATCAAGCTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCATTCGAAAAGGAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTAACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGAGGATGCACTTTGTATAATGAAGCCTTTGTTCAGTAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGTGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTA</gDNA_template>
            <first_frame> E  S  V  D  K  S  A  V  I  A  S  *  T  S  K  T  P  C  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  G  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  Y  Q  Y  H  S  Q  M  L  L  M  F  F  L  A  L  *  V  Y  *  Y  I  I  N  K  Y  D  Q  K  E  V  Q  I  W  L  K  N  P  I  H  Q  A  H  E  C  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  H  S  K  R  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  N  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  G  C  T  L  Y  N  E  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  C  </first_frame>
            <second_frame>  N  L  L  T  N  R  R  *  *  L  A  K  P  A  K  L  L  V  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  I  N  T  I  L  K  C  S  L  C  F  F  L  L  F  E  Y  I  S  I  S  S  I  N  T  I  K  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  I  R  K  G  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  E  D  A  L  C  I  M  K  P  L  F  S  N  S  *  S  C  A  F  N  S  L  N  S  V  G  A  I  L  *  G  G  I  E  M  G  R  V </second_frame>
            <third_frame>   I  C  *  Q  I  G  G  N  S  *  L  N  Q  Q  N  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  W  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  L  S  I  P  F  S  N  A  P  Y  V  F  S  C  S  L  S  I  L  V  Y  H  Q  *  I  R  S  K  R  G  P  N  M  A  *  K  S  H  S  S  S  S  *  M  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  E  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  N  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  *  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  R  M  H  F  V  *  *  S  L  C  S  V  T  L  E  V  V  P  L  T  L  L  T  P  W  E  P  F  Y  K  G  V  *  K  W  G  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002B09.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58853" stop="59083"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIINKYDQKEVQIWLKNPIHQAHECSRGIRKTKRHHYKFVMPIPHSKRSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002B09.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58776" stop="58973"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNIINTILKCSLCFFLLFEYISISSINTIKKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="62290" PGL_stop="61361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62290" e_stop="61783"/>
            <exon e_start="61572" e_stop="61361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.907"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="62290" e_stop="61783" e_length="508"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61782" i_stop="61573" i_length="210"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="61572" e_stop="61361" e_length="212"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62290" stop="61783"/>
              <exon start="61572" stop="61361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCTTCGGTGGAGGTAGGTTATGGTTTTTATGCTTTTCATAGTAAACTCTTAATAGCGAATGATATGTATTGGGTAGTATTGTAAACCCTTCTATGTGCTTAATTGTATGCATGCATGAACGTTATTGTATAATTGTGATTATATTAAGCATGATGATGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATAAATTGATGGAAGTAGAATTAGGGGACCGGCTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACAAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACAC : GTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGTTTAATGAATATGAGGAAGTGGAGTGTCACGTACCGACACAAAAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGA</gDNA_template>
            <first_frame> K  S  S  V  E  V  G  Y  G  F  Y  A  F  H  S  K  L  L  I  A  N  D  M  Y  W  V  V  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  V  *  L  *  L  Y  *  A  *  *  C  Y  *  I  P  N  L  D  K  N  L  I  S  F  *  *  *  C  L  G  K  G  E  G  L  M  N  *  S  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  G  S  R  I  R  G  P  A  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  Q  T  D  T  *  N  *  G  I  G  C  H  E  P  T   : R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  K  W  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  * </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  F  M  L  F  I  V  N  S  *  *  R  M  I  C  I  G  *  Y  C  K  P  F  Y  V  L  N  C  M  H  A  *  T  L  L  Y  N  C  D  Y  I  K  H  D  D  V  I  E  S  Q  I  L  I  K  T  *  S  L  F  N  D  D  A  L  V  R  E  K  A  *  *  T  K  V  M  R  L  M  M  P  W  *  E  R  R  L  D  K  L  M  E  V  E  L  G  D  R  L  S  R  T  D  T  *  N  *  G  I  G  C  H  E  L  T  R  R  F  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  K  P  T  R  R  I  R  G  S  G  V  T  N  R  H  :  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  V  *  *  I  *  G  S  G  V  S  R  T  D  T  K  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H   </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  L  C  F  S  *  *  T  L  N  S  E  *  Y  V  L  G  S  I  V  N  P  S  M  C  L  I  V  C  M  H  E  R  Y  C  I  I  V  I  I  L  S  M  M  M  L  L  N  P  K  S  *  *  K  P  N  L  F  L  M  M  M  P  W  *  G  R  R  L  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  I  N  *  W  K  *  N  *  G  T  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  *  H  V  D  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T :   *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  F  N  E  Y  E  E  V  E  C  H  V  P  T  Q  K  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0002B09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="63508" PGL_stop="63684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63508" e_stop="63684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="63508" e_stop="63684" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63508" stop="63684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACTTCTCCTCCCATATAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGGAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  L  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  F  S  S  H  I  M  L  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  G  H  Q  T  L  S  H  M  H  G  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  *  C  F  K  W  G  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  E  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0002B09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 139 chains have been computed
$ 
$ memory statistics:
$ 69704 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 3668 bytes was the average size of a spliced alignment
$ 18528 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1544 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 154 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 15:02:31
-->
