<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:26:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327766" ref_strand="+" ref_description="SGN-U327766        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT1G70320.1 | Symbol: None | ubiquitin-protein ligase 2 (UPL2), nearly identical to ubiquitin-protein ligase 2 (Arabidopsis thaliana) GI:7108523; E3, HECT-domain protein family; similar to ubiquitin-protein ligase 2 GI:7108523 from (Arabidopsis thaliana) | chr1:26492408-26504944 REVERSE | Aliases: F17O7.15, F17O7_15 (evalue: 5e-70, score=261) genbank/nr: E3(evalue: 2e-72, score=276)">
      <seq>aagtggtgcaactctacgtgaaagtcttcgaagatcttgatgttgaaattggaagtgctgatgggcatgatgatggtgaagataggcaaggttcatcagatgctagaactagagaggactaacgtatcgtttggaaattctactcaagtaagtgcgagagatgttgcccttcacagtgtatctgaagcttcagaacatccaaatcaagaagcagaacaaggtggacccaatgatgaacagcaacgtaatgtagatgctgattctggatcaattgatcctgcatttcttgaggcgcttcctgaggagttgcgagccgaggttctctcagctcaacagggtcaagcaactcaaccaccaaattctgagcctcaaaatggtggagatattgatccagaatttctggcagcccttccgtctgacatcagagaagaagtgttggcacagcaaagggcacagcggctgcagcagtcacaagaattagaaggccagcctgttgagatggacactgtgtcaattattgctacattcccttcagaactacgggaagaggtccttctgacatcttctgatgccattcttgctaatttaacacctgctcttgtggcggaagcaaatatgttgcgtgagagatttgcacgtaggtataaccgaacactttttggtatgtatcctagaaaccgtagaggcgactctaggcggaatgaacaattggacagggctggtggaaccctttcgcgtagatcagccggaagtaagcctctggaggctgatgggtctcccttagttgacactgagggtttaagagctttggtgaggttgctgcgcgtattccagccaatatacaaagttcctctacagaggctgatgttgaatctcagtgcacatgctgaaacaagaactgctttagtgaaaatatttatggacttgttgatgcttgatgtcggacagcctgctactgatctgaatacagctgaacccccatatcgactatatggttgccaaagtaatgtgatgtattcacgtcctcaacatcttgatggaattcctccattactatctcgtcgtgttcttgagacacttacatacttggcaaagaaccattctttagttgcaaagactctacttgaattcaggctccctcgaccagtgctggaagggccaatagttccggatcagaggcggggaaaagctgttatggttgaggctgatggaccagatagatggcagcttgaaggacaagtatctctggcattgcttttgggcctcttgaaccatcccctttatttgagaagtgttgcacatcctgagcagctgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="32697" stop="34976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32997" g_stop="33543" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33544" i_stop="33715" i_length="172">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33716" g_stop="34000" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="834" r_length="285" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34001" i_stop="34078" i_length="78">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34079" g_stop="34283" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="835" r_stop="1039" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34284" i_stop="34398" i_length="115">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34399" g_stop="34670" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1040" r_stop="1311" r_length="272" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34671" i_stop="34756" i_length="86">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34757" g_stop="34764" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1312" r_stop="1319" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-U327766" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1317</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32997" e_stop="33543"/>
          <exon e_start="33716" e_stop="34000"/>
          <exon e_start="34079" e_stop="34283"/>
          <exon e_start="34399" e_stop="34670"/>
          <exon e_start="34757" e_stop="34764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGGTGCAACTCTAGGTGAAAGTCTTCGAAG-TCTTGATGTTGAAATTGGAAGTGCTGATGGGCATGATGATGGTGGAGATAGGCAAGGTTCAGCAGATGCTAGAACTAG-GAGGACTAACGTATCGTTTGGAAATTCTACTCAGGTAAGTGCGAGAGATGTTGCCCTTCACAGTGTATCTGAAGCTTCAGAACATCCAAATCAAGAAGCAGAACAAGGTGGACCCAATGATGAACAGCAACGTAATGTAGATGCTGATTCTGGATCAATTGATCCTGCATTTCTTGAGGCGCTTCCTGAGGAGTTGCGAGCCGAGGTTCTCTCAGCTCAACAGGGTCAAGCAACTCAACCACCAAATTCTGAGCCTCAAAATGGTGGAGATATTGATCCAGAATTTCTGGCAGCCCTTCCGTCTGACATCAGAGAAGAAGTGTTGGCACAGCAAAGGGCACAGCGGCTGCAGCAGTCACAAGAATTAGAAGGCCAGCCTGTTGAGATGGACACTGTGTCAATTATTGCTACATTCCCTTCAGAACTACGGGAAGAGGTACTTCTTTAGATGATTAGGTGTAATCAATTTGAATTTTTATTTCATTTACTCTATTACAAGTAGCGACCTTGTTTTCCTTTTTCGTTTTGTTTTTTCATGTTTGATTTTTGAGCTTGGTTTTCTTGAATCCTTCTATGGCTATTATTGGATCTGATGTTTTATCTCGCAGGTCCTTCTGACATCTTCTGATGCCATTCTTGCTAATTTAACACCTGCTCTTGTGGCGGAAGCAAATATGTTGCGTGAGAGATTTGCACGTAGGTATAACCGAACACTTTTTGGTATGTATCCTAGAAACCGTAGAGGCGACTCTAGGCGGAATGAACAATTGGACAGGGCTGGTGGAACCCTTTCACGTAGATCAGCCGGAAGTAAGCCTCTGGAGGCTGATGGGTCTCCCTTAGTTGACACTGAGGGTTTAAGAGCTTTGGTGAGGTTGCTCCGCGTATTCCAGGTATTAACTTTGTGAGGTTGAATTACTGTTTTTCTTGCTGCTATGATTTGAACATTGACACGTCTGGTTCTTTTGCAGCCAATATACAAAGTTCCTCTACAGAGGCTGATGTTGAATCTCAGTGCACATGCTGAAACAAGAACTGCTTTAGTGAAAATATTTATGGACTTGTTGATGCTTGATGTCGGACAGCCTGCTACTGATCTGAATACTGCTGAACCCCCATATCGACTATATGGTTGCCAAAGTAATGTGATGTATTCACGTCCTCAACATCTTGATGGTGAGACCTTATCATCTTGCTTAGCTTTTTATCATGTATCACATCTATTGTTACTACTGTTATATTTGTGATTTTTTTTGCCTTGGGTAAATTTTATTGATCTAATGGCTTGTAGGAATTCCTCCATTACTATCTCGTCGTGTTCTTGAGACACTTACATACCTGGCAAAGAACCATTCTTTAGTTGCAAAGACTCTACTTGAATTCAGGCTCCCTCGACCAGTGCTGGAAGGGCCAATAGTTCCGGATCAGAGGCGGGGAAAAGCTGTTATGGTTGAGGCTGATGGACCAGATAGATGGCAGCTTGAAGGACAAGTATCTCTGGCATTGCTTTTGGGCCTCTTGAACCATCCCCTTTATTTGAGAAGTGTTGCACATCTTGAGCAGGTAGTTTGCACAAGTAGGATGTCTCTTTGAGTAGTCATTATCTAGTGTTTCTTGCTGTTCTCAACTATTTTCCTTTTGGTATCTAGCTGTTAAA</genome_strand>
        <mrna_strand>AAGTGGTGCAACTCTACGTGAAAGTCTTCGAAGATCTTGATGTTGAAATTGGAAGTGCTGATGGGCATGATGATGGTGAAGATAGGCAAGGTTCATCAGATGCTAGAACTAGAGAGGACTAACGTATCGTTTGGAAATTCTACTCAAGTAAGTGCGAGAGATGTTGCCCTTCACAGTGTATCTGAAGCTTCAGAACATCCAAATCAAGAAGCAGAACAAGGTGGACCCAATGATGAACAGCAACGTAATGTAGATGCTGATTCTGGATCAATTGATCCTGCATTTCTTGAGGCGCTTCCTGAGGAGTTGCGAGCCGAGGTTCTCTCAGCTCAACAGGGTCAAGCAACTCAACCACCAAATTCTGAGCCTCAAAATGGTGGAGATATTGATCCAGAATTTCTGGCAGCCCTTCCGTCTGACATCAGAGAAGAAGTGTTGGCACAGCAAAGGGCACAGCGGCTGCAGCAGTCACAAGAATTAGAAGGCCAGCCTGTTGAGATGGACACTGTGTCAATTATTGCTACATTCCCTTCAGAACTACGGGAAGAG............................................................................................................................................................................GTCCTTCTGACATCTTCTGATGCCATTCTTGCTAATTTAACACCTGCTCTTGTGGCGGAAGCAAATATGTTGCGTGAGAGATTTGCACGTAGGTATAACCGAACACTTTTTGGTATGTATCCTAGAAACCGTAGAGGCGACTCTAGGCGGAATGAACAATTGGACAGGGCTGGTGGAACCCTTTCGCGTAGATCAGCCGGAAGTAAGCCTCTGGAGGCTGATGGGTCTCCCTTAGTTGACACTGAGGGTTTAAGAGCTTTGGTGAGGTTGCTGCGCGTATTCCAG..............................................................................CCAATATACAAAGTTCCTCTACAGAGGCTGATGTTGAATCTCAGTGCACATGCTGAAACAAGAACTGCTTTAGTGAAAATATTTATGGACTTGTTGATGCTTGATGTCGGACAGCCTGCTACTGATCTGAATACAGCTGAACCCCCATATCGACTATATGGTTGCCAAAGTAATGTGATGTATTCACGTCCTCAACATCTTGATG...................................................................................................................GAATTCCTCCATTACTATCTCGTCGTGTTCTTGAGACACTTACATACTTGGCAAAGAACCATTCTTTAGTTGCAAAGACTCTACTTGAATTCAGGCTCCCTCGACCAGTGCTGGAAGGGCCAATAGTTCCGGATCAGAGGCGGGGAAAAGCTGTTATGGTTGAGGCTGATGGACCAGATAGATGGCAGCTTGAAGGACAAGTATCTCTGGCATTGCTTTTGGGCCTCTTGAACCATCCCCTTTATTTGAGAAGTGTTGCACATCCTGAGCAG......................................................................................CTGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341730" ref_strand="+" ref_description="SGN-U341730        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G55860.1 | Symbol: None | ubiquitin-protein ligase 1 (UPL1), nearly identical to ubiquitin-protein ligase 1 (Arabidopsis thaliana) GI:7108521; E3, HECT-domain protein family; similar to GI:7108521, GB:AAF36454 from (Arabidopsis thaliana) | chr1:20883175-20899059 REVERSE | Aliases: F14J16.37 (evalue: 1e-13, score=73.9) genbank/nr: E3(evalue: 8e-30, score=133)">
      <seq>acatcctctacagagcaactgcctggtcctccagtccaagctgctgctgaaatgaatactgaatctcatgcagcttcatctgaggttgaggacaaatctggagcatcgtcctctatcacaggcagagaccaaagtactgaaagtattctactcagtctaccacaattagaacttcgacgtctgtgctcattgcttgccagagaaggtctttcagacaatgcttactctttggtagctgaggtactgaaaaagttggtggccatagctcctgccatttgtcatttatttattactgagcttgctggctctgtgcaaagtctgaccagatctgcgatggatgagctaaacaagtttagggaagtggaaaaagcactgctcagtaccacttcaactgatggcgctgtgatactcagggttttacaagcattaagctctcttgttgcttcaattggtgacaagaaaaacgagaatcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="34526" stop="36041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34826" g_stop="35031" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35032" i_stop="35471" i_length="440">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35472" g_stop="35741" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="476" r_length="270" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-U341730" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34826" e_stop="35031"/>
          <exon e_start="35472" e_stop="35741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCCTCTACAGAGCAACTGCCTGGTCCTCCAGTCCAATCTGCTGCTGAAATGAATACTGAATCTCATGCAGCTTCATCTGAGGTTGAGGACAAATCTGGAGCATCGTCCTCTATCACAGGCAGAGACCAAAGTACTGAAAGTATTCTACTCAGTCTACCACAATTAGAACTTCGACGTCTGTGCTCATTGCTTGCCAGAGAAGGGTAAGCTAGTTCCTAATCCTGTGATGTGTATTTGAAATTGTAGATTCTAGGTTTGATGTGACAAGTTCTATAGATATTATTTCTGTGAGGCACCCCTTAATTTATAGACTTGTGTGTTTGCCTGCAGGTTGACATACTTTATACTTTACTAATTTTGCACTTAACGTATTTTCTTTCTTGTTTAAATGTGGGATCAGTAAATTAACTGACTGCTTGGTGTGACGGTCTTGTCGAAATTTCCGTGCTTATGACTTCTATTTAGGCATTGGATTATCTGTTTGGTTGTACATACACTTATTTGATATTCTAATACTTCGCTATTGATTTCAATGACCAAGTAATTTTTGAATCTTCAGTGGGTTATTTTTACTCGAGTCTCGCTGAACAATGTATTATTCTATTTATTATTGAAGCTTTTTAATGTTTTCTTCTTTTATCAGTCTTTCAGACAATGCTTACTCTTTGGTAGCTGAGGTACTGAAAAAGTTGGTGGCCATAGCTCCTGCCATTTGTCATTTATTTATTACTGAGCTTGCTGGCTCGGTGCAAAGTCTGACCAGATCTGCGATGGATGAGCTAAACAAGTTTAGGGAAGTGGAAAAAGCACTGCTCAGTACCACTTCAACTGATGGCGCTGTGATACTCAGGGTTTTACAAGCATTAAGCTCTCTTGTTGCTTCAATTGGTGACAAGAACAACGAGAATCAAAT</genome_strand>
        <mrna_strand>ACATCCTCTACAGAGCAACTGCCTGGTCCTCCAGTCCAAGCTGCTGCTGAAATGAATACTGAATCTCATGCAGCTTCATCTGAGGTTGAGGACAAATCTGGAGCATCGTCCTCTATCACAGGCAGAGACCAAAGTACTGAAAGTATTCTACTCAGTCTACCACAATTAGAACTTCGACGTCTGTGCTCATTGCTTGCCAGAGAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTCAGACAATGCTTACTCTTTGGTAGCTGAGGTACTGAAAAAGTTGGTGGCCATAGCTCCTGCCATTTGTCATTTATTTATTACTGAGCTTGCTGGCTCTGTGCAAAGTCTGACCAGATCTGCGATGGATGAGCTAAACAAGTTTAGGGAAGTGGAAAAAGCACTGCTCAGTACCACTTCAACTGATGGCGCTGTGATACTCAGGGTTTTACAAGCATTAAGCTCTCTTGTTGCTTCAATTGGTGACAAGAAAAACGAGAATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319755" ref_strand="+" ref_description="SGN-U319755        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: AT1G55860.1 | Symbol: None | ubiquitin-protein ligase 1 (UPL1), nearly identical to ubiquitin-protein ligase 1 (Arabidopsis thaliana) GI:7108521; E3, HECT-domain protein family; similar to GI:7108521, GB:AAF36454 from (Arabidopsis thaliana) | chr1:20883175-20899059 REVERSE | Aliases: F14J16.37 (evalue: 0, score=748) genbank/nr: E3(evalue: 0, score=823)">
      <seq>tcatctattgttacctcatctaaacctgctggagcaatgtcttcgctccctgcaggctcacaaaacattttaccgtacgtagagtccttttttgtgatgtgtgagaagttgcatcctgggcatttgggtgcaggacaggagttcagtattgcgacagttcctgatccagaagaggctactgcttctgctatgcagccaaaaacacctacatctgcaacaaaagttgatgagaagcacattgcttttgtaaaatttgcagagaagcacaaaaaacttcttaatgcttttgttcggcagaatcctggactactggagaagtctttctcgatcatgctgaaggttcctcgttttgttgattttgacaataaaaggtcctacttcagatctaagattaaacatcaacatgatcatcatcacagtcctctgagaatttctgtgagaagagcttatatacttgaagattcatataatcagctgcgcatgaggacaactcaagaattgaaagggagattgactgtacatttccaaggggaagaaggaattgatgctggtggacttactagggaatggtatcagttattgtccagagtaatttttgacaagggagcgctattgtttactacagttggcaatgaagcaacatttcagccaaatcccaactctgtgtaccaaactgagcacctctcatacttcaaatttgttgggcgagttgttgggaaggcactatttgacggccaacttcttgatgttcattttacacggtccttctacaagcacatacttgatgctaaagtgacatatcatgatatcgaagctattgatcctgactacttcaaaaatttgaaatggctgcttgagaatgacatcagtgatattttagaccttacattcagtattgatgctgatgaagagaagttgatactttatgaacgcaatgaggtgactgattatgaactaatcccaggtggacgaaatatcagagtcacggaggaaaataagcaacagtatgtcaacttggttgctgagcatcggttgacgactgctatccgtcctcagataaatgcatttttggaaggattcagtgaattgattccgcgagagctgatctctatttttcatgacaaggaacttgagttgttaattagcggtcttccagacatcgatcttgatgacttaagggcaaatacagaatattctggatacagcccaggttcacctgttattcagtggttttgggaagttgttcaagcttttagcaaggaagacaaagctcgccttcttcaatttgtcactggaacctcaaaggtgccattggaagggtttagtgcactgcaaggaatttcaggttcccagaaatttcagatccacaaagcttatggcagtgctgatcacctgccttcagcacatacatgtttcaaccagttggatctaccagagtatccctccaaagagcatctagaggagagactactgcttgccattcatgaagctaacgaaggatttggatttggttaaaacaacaatgggtggtctgaattagattctgtagataatttccatgttaaaaaagagagttttttttttatatatacaggagaacagtctaagggcattttaagtctgtgagatacctgtctataatgctgtacagtctatttgctatgcgaaatgatcctggcnnannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="+" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="35581" stop="45529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35881" g_stop="36591" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36592" i_stop="36674" i_length="83">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36675" g_stop="36821" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="858" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36822" i_stop="36895" i_length="74">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36896" g_stop="36976" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="859" r_stop="939" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36977" i_stop="37052" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37053" g_stop="37278" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="940" r_stop="1165" r_length="226" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37279" i_stop="37394" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37395" g_stop="37534" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1166" r_stop="1305" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37535" i_stop="37617" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37618" g_stop="37724" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1306" r_stop="1412" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37725" i_stop="38168" i_length="444">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38169" g_stop="38436" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1413" r_stop="1680" r_length="268" r_score="0.996"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="38437" i_stop="39753" i_length="1317">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39754" g_stop="39789" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1681" r_stop="1716" r_length="36" r_score="0.694"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="+" ref_id="SGN-U319755" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35881" e_stop="36591"/>
          <exon e_start="36675" e_stop="36821"/>
          <exon e_start="36896" e_stop="36976"/>
          <exon e_start="37053" e_stop="37278"/>
          <exon e_start="37395" e_stop="37534"/>
          <exon e_start="37618" e_stop="37724"/>
          <exon e_start="38169" e_stop="38436"/>
          <exon e_start="39754" e_stop="39789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTATTGTTACCTCATCTAAACCTGCTGGAGCAATGTCTTCGCTTCCTGCAGGCTCACAAAACATTTTACCGTACGTAGAGTCCTTTTTTGTGATGTGTGAGAAGTTGCATCCTGGGCATTTGGGTGCAGGACAGGAGTTCAGTATTGCGACAGTTCCTGATCCAGAAGAGGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCTGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTTGTGAGTATTTTCCTTCTTGGTTCTGTTTGCTTGACTCATTTATTTTTAAACAATATTTAATGTGCTTTATGTAAATATCCCAGGTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAGGTGCAGTGTTTTTTCTGTTCTCTGTGATTATATGTCCAAAAATTTGCTCTGCTCACGTTTCTTGTTTTGTGTAGAATGACATCAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAGGTATGAGTTCTTCTGCGGCAATTGAATTTTAAGCATTGTTGTTAGAAAGGCTCTGATTGCAATTTGTGTAATGCAGGTGACTGATTATGAACTAATCCCAGGTGGACGAAATATCAGAGTCACGGAGGAAAATAAGCAACAGTATGTCGACTTGGTTGCTGAGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTCCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATCGTATGTTTCACTATTTCCTTTATTTGTTAATTCATGTGGTAATTCTATCTTAGATAGTTATTGTCAGTATCAAGATAGAGTTGCTTCTTACAATTAATTTGCCCCTTGGTTTGCAGTTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGGTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAGGTAGTTTGTTGCTTTCATTTGATTATAGTTGCATGTTAAATGTCTCCTGCAATCATCAAACAAATCTGTGTGTAATTCTCCAGGTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACCTGCCTTCAGCACATACATGGTAATTATTTGATCATCTGAAACTAAATTATGATTGCCCTTCTTGATGCTGAAGCTTTGTGCCAGTAAAAGAACCATGTTGCTTCTCTTCTAGTTACTCAACCTTCTTATGTTTATGTAGCCATTTTAAATTACCTGTATTGCTGAAGATTCCAGTAGAAGTTCATGTTGCGTCCTGTGTCCAAATTGTCTTCTTTTGCTTTCTTCTGATGTGCATCTACTCAATTGAATTGACGTCTCTTCTCTATGAGATGGGAATCTTATATGAATATTTCAATTAAATGTCGACTATAAGTATTTATCCTAATCCCAATTAGACTTCAACTACTAGCAGCAAATAGAAACTTCTCCCTTTGAGTTCGGAGGGAGTATTCGGAATTCTACTTGTATGTATTCTTTACTTATATACTGTGAACACTCCTTAACTATTATTTGCTGGTTGCAGTTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAAAACAACAATGGGTGGTCTGAATTAGATTCTGTAGATAATTTCCATGTTAAAAAAGAGAGTTTTTTTTTTATATATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTATAATGCTGTACAGTCTATTTGCTATGCGAAATGATCCTGGCAGTTCTTTTTTTTTGGCAGTCGTTTGTTTATCTTCTCTTTTCCCTTTGTTTCTCTACTTTCTGCTTGTCTTTGTCACTATTGTTGCTTGTAGGTGTTGCAAATTTATCACTCCCATGCTCTCTATTCTGAATACTGAGAGTAGACCATTCCCTTTTCTATGTGATGTTCTCATTATTGCCGTTCATCAAGTACCTAAAAGTTCATATTGCGACACAGAACAAAGACCATCTGATATATGTAAATAATGGTGTGACATTTTCACAAGGACGTGTAAATTACACTTTCCTGTATACTTGCACGACTATGGCGCTATGATAAAATACAAAGTGGGTGTGGAACTTTTGGCATAATATGGTGATATCACTACGTTTATTAGTCTAAGAGAATAACAACTAAAGCCCCAAATAAAGGACTAGAGAGAATTTGATCTTGAGGAGGGCAAAGGGGAAAACAAGAAGTTTGGCACTCCAACTTTTGTTGCTTATACTTGGGGTAGTTGGGTTCTGCCATAGCCTAACCTCATACCCAAAAGTTTGAAGTTAGAAGAGCCTGAACTTTATAATTTTTGGACTGATGGTAGGCTCTCTCTATCTGAATAAGGCATAGAATTAGAAAAAGCCGTTTTTAATGAGTTAGGTGTCTAAATCAGAACTCGTGAAGTATTGGAGCTAGAAACTCAAATTTGTGCAAGTATGAATGTACTATTCATGAAATGTAACCAAATATAAATGAAGGTTGTCAATGATGTCTTCAATTAAAATAGTTAATAATTAAATAACTTTTTGAGATAAAAAATAATGTAATAATATAAATGCAATAAATTTAACGACAAATGACTATTAATAAAACGAAAAATTAACCATGGTACAAGTGGGAAATTTTTCTACAATATATGCTTCTTCTCTTTTCCCTCTCTTGTGTAATAGAAAATAAAAAACAAAATGCTTTGAAGAAAATTTATGTTGTACCTTAAAGTTGTTACACCTACCTGAATGCAATAATTGCTCTTCAGGAATTTTCATTTTCGTCGACTTGAGTTTGATATAATATATTTTTTTTCAAGTTTCATACGCAATTAATAAAAAAAGCTTATTTCAAATGAATTCAATGCGAATTAAAATTTGTCGACTTTTAGTGGGAAACCAAAGAGAAAAGGCAGTATGAATTTATTTTCTATTTTTGTTTTCATTTTTCTCCTATGGATAATTGACCAAACATTGACTCCTTAGCCTGAAAGTCTCTTCGTTTCCCTTTATAATTCCCACTGTCATGTTTATTTCCCTTTGCTTTCCCAAAACCAATCAAATAAGACATGCATGTAAAAATAAAATAAAAATAAAAGTCCAAAAAAAA</genome_strand>
        <mrna_strand>TCATCTATTGTTACCTCATCTAAACCTGCTGGAGCAATGTCTTCGCTCCCTGCAGGCTCACAAAACATTTTACCGTACGTAGAGTCCTTTTTTGTGATGTGTGAGAAGTTGCATCCTGGGCATTTGGGTGCAGGACAGGAGTTCAGTATTGCGACAGTTCCTGATCCAGAAGAGGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCTGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTT...................................................................................GTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGATGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAG..........................................................................AATGACATCAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAG............................................................................GTGACTGATTATGAACTAATCCCAGGTGGACGAAATATCAGAGTCACGGAGGAAAATAAGCAACAGTATGTCAACTTGGTTGCTGAGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTCCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATC....................................................................................................................TTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGGTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAG...................................................................................GTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACCTGCCTTCAGCACATACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAAAACAACAATGGGTGGTCTGAATTAGATTCTGTAGATAATTTCCATGTTAAAAAAGAGAGTTTTTTTTTTATATATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTATAATGCTGTACAGTCTATTTGCTATGCGAAATGATCCTGGCN.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340407" ref_strand="+" ref_description="SGN-U340407        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | TATA-binding protein-associated factor TAFII55 family protein, contains Pfam profile: PF04658 TAFII55 protein conserved region | chr1:20631694-20633321 REVERSE | Aliases: F7A10.3, F7A10_3(evalue: 3e-58, score=221) genbank/nr: gi|77416967|gb|ABA81879.1| unknown [Solanum tuberosum] (evalue: 2e-94, score=348)">
      <seq>gcttcaacaattggcactattttgtgccatggatgagcaatttattctgagggttccaccttctgttgctgagcgaattgaccgtcttttaagtgaaaatccttcttcagaagacaaactggacttgtctttttctgaggatggaaagacgggcagttttgtcataggcgaggagcactttcctgcatcacttttgaatcttccttgcatagtggagtcgtacaaaacttatgatgacaacgtgctcattaaatccgcagacattggtcaaatgattatggtgagagaagaaggtgatcctgttccagatgtggtggaatatagacatggcctcacacctccaatgagagatgcacgaagacgaagatttcggagagagccagatcttaatcctgagcttgttcggcgtgttgagaaagacttgcagaacataatgtctggtggaacagctgagaatattgatatagaagttgtcgagcaagaggaaggaggtgaagcaagtgcacgccatgtgaacaagaaagtggcacaacctgcaacaaagcctgacatttctgagcccgggacagctggtgaggatcctgatagaactgaatctgangattctgatgattcaatatagtcgatgacatttttcagcctttgctattgttatagtggctacaagtctttgctaatgttgtagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053M02-Zoj0J/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0053M02.1" temp_strand="-" temp_description="C04HBa0053M02.1  CU012062.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0053M02 sequenced_by:sanger upload_account_name:uk">
        <position start="55412" stop="46873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55112" g_stop="55087" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55086" i_stop="54775" i_length="312">
            <donor d_prob="0.593" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54774" g_stop="54664" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="137" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54663" i_stop="48498" i_length="6166">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48497" g_stop="48364" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="271" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48363" i_stop="48266" i_length="98">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48265" g_stop="48146" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="391" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48145" i_stop="47814" i_length="332">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47813" g_stop="47744" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="461" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47743" i_stop="47399" i_length="345">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47398" g_stop="47173" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="687" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053M02.1" gen_strand="-" ref_id="SGN-U340407" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55112" e_stop="55087"/>
          <exon e_start="54774" e_stop="54664"/>
          <exon e_start="48497" e_stop="48364"/>
          <exon e_start="48265" e_stop="48146"/>
          <exon e_start="47813" e_stop="47744"/>
          <exon e_start="47398" e_stop="47173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAACAATTGGCACTATTTTGTGGTGAGAATTCTATCAATTTACTATGTTAAAGAGAGAAGAATCGAAATTCCTACTTATTAAAGCTTTTTTTCGAAGGAATTTGTTTGATCTATTTCTATAAATTTTGATTCTTTATTCAAAGTAGAGTACAAATTACTCGTTTGTATGATTCTTGACTGATACTTATGGAGAAGATAGTGATGTCAAAAGGGTGGAGAAGATAGTGATGTCAAAAGGGTTCTTTGATTGAAAGTAGAAAATCAAGTTTAAGGGTGTTTCTGAAGTTATTTTTGTTTGGTCAAAAGATTCAATTTTTCTTCTTAATTTGTGCAGCCATGGATGAGCAATTTATTCTGAGGGTTCCACCTTCTGTTGCTGAGCGAATTGACCGTCTTTTAAGTGAAAATCCTTCTTCAGAAGACAAACTGGACTTGTCTTTTTCTGGTAACTTCTTTTTTTCTTTTGGAGTTCTAAATATTGTTGTGCAGGAGCTTATAGTTTTAAGTTGATGGTCAAGAATACACTGAACTATCAGGTGTTCATTGTTCCCTTTTATTACTTGAAATGTGGCAATTATTAAGGTAGGAAAAGGAAACAACTAATAGTTGAGGTGTCTTTTGGTAACTAGTTGGTGATGGTTTAGGTAGGAAAAGTAAATACCGGACAGTTTAGGTTGAAAACTCGCAAAAATGTGATATTTCAAGTGTGATTTTTGCCATTATCTTTATAATTTTTGACACAATTATTTGACATGTTGGCATTTACTCTTTAGATTTAAACTAGTCCTACTTCACACCAACATTCCTTTTATGTTGTTTCACATCGTTAATACTCTCGCATCACCTATCAAAACAGGAAACCATAGTCCTTCCATCTTTTGCTTCCCATGTGTTCGTATTGTCATTCCTTGAACCTTTGATTATTATTTTTATGATAGCCAGGGTGTCCGAGCCAACCTGTGTACACTTCAGCTAATTCCACAAGTACTTGCTACCTCCGACTGTGCAAGTATTAGGTAACTCTTTTCACCAAAATTTGGACAGATGGGAAGAAATCATTAGTGTTTTTGCCTGTTGAACCTAGGACCTCACGGTTCTCAACCCACTTCATCGATCACTATTCACTAGGCCACCTCCGTGAGAGCTGAACCTTTTTACTCCCCCCTATATCTTCCAATTCCGTATACTGCTTCTGATTCAGAGAACCTTTGGGATTTAGAGAATCTGTGATTCGTCTTAAAAATGTTAAGTATTTAGTACTGGAATGAAATTTACTTGAATAGAGGGGAAAATACATAGAAGATTCATCCAAATCTAACTGATTTGGGATTGAGATGTGAATGATTAACTATAGACTGAATGGTTTTCCAAACAATTTTTATTCTCTGAGGTTATCTGGAATACCCATAAGAAGTTCCAAAATATTGGGGGTGTGAAGTTGTCAATAGAGCATAGTTTATTCTACTGTCGTTTTGATTGAATTTGTAAATTAATAGTCTTTGGTGTCCACAAGTTATATGGCCTCATCTGATTTCTAAGGCAGGATTTTCCCCCCATTGTGGCCCGCCATACCTAGGTCTTTTCTTTCATATGCTAATAAGTGAAAACATCGTGGTCTGAGTTTTGGATTTTTGTCCAGACCTCCCTGAGATCCAATGAGGATGAAAACTTCATCCTTGTTTATTTCTTCTAAAGTGGGAAGAGAGGTTAAGTAGTCATTGTCTTCATAGGTAACTTTCTTAGGGATGCAGCTTAATATGTTCCAGTCCACTTGTTCCTTTTGAGTGAATTGTTTTTGGAAAAAATTGACTGCTTCAAAAGCTCTGCCATCTTCCCCTTCTATCCAATTCCCAAACTCATTCTTTATAGTCTTGAGCATAAGTCTCCTCCTTTTACTATTGATAACTGATGGAAGAACTTGGTGTTGTAGTCTCCTTCCTTAAGCCATTTAAGTGTAGCTTTTTGTCTAAAGTAAGTCTTCAGTTTTCAAATGCTTAATGAATTCAGCATTTGCCTTATTGTATTCTTGTCTGATGGTGCTAGAATGGTTGGTTTCCATTATGGTTTCAGGATCTTTTACCTTTTTTTCAAGCTTCTTGGTGTTTTAAAAAATGTCACCAATGCTGTTTTTTGACCACCAAGAAAGATGTTTGCGCACATTTTTAAGTTTCAAATGCATTTTCCACATTGGGTTGCCATGGACTTGAATGTTCCACGCATTTTGAATAACTCCCAAGTAGTCAGGTTGCTCTGTCCAAAAATCAAGAAACTTGAAGTACTTAATTCTCTGAGGAGTACCTGTAGAGAAAGAAAAGAAAACAGGTGACTGATCTGATCCTGTTCTTATGAGATGAGATATGCTAGAATCAGGAAAAGTCTTAATCCACTCGTCATTAGCCACGACTCTGTCTAGCCGTTTCCAAATCCTGTCTTCAGGGAATCTGCCATTACACCACGTGTATTTGGAGCCAATAAAGCCCAAGTCAAGCAAATTACAGTCCATTAGGCAGTCTAAGAAAGGTAATCTTTTGGCCGTCCTGTGGGAGTTGCCCCCCTTTTTTTCTTCTGGACCAACGATGCAATTAAAGTCTCCTGTAACACACCAAGGAGATGAGATGTTAGCAGACCAGTCCCTCAAACTATCCCACAAGTCATTTCTGAGGTGAGCTTTGCATTTAGCATAGACAACAGAGATAATAGTCTTGACATCTTCACAGACAAGCTCACAGGTAAGAATTTGATATTCATCTCCTCAGATCACACACTTCTGTTGAGAGTCACAAAATATCCAAATCTTAATATTGGAATTGGCAAAACAGTAGTCAAAACCAAGAATTTTGTTGTGTCTCAAAATTTTGGAAGTATTAGTGAAAGGTTCAAGGACGGCAAGAAAAGTAACATGTTGAGAGGATTTAATCATTTTCAATCTCTCAAGAGCACCTTTGTTATTAATGGCCCTCACATTCCAAATAAGAGTCTTGATCACTAATAAAAGGCGATTTAGAGAGTAATTTTTGACTGTGATCTAGTCACAGTAGTATTAACATGGGAGCTATCTCCTTTGTTGGATTTGTTTCTTCTGTATTTCTACTCTTTTCCTAGAGAGGAAAGATTGGTGTTGTCAATAATTTCTCCAAAAGCTTGCTGGACTTCTTTTTTTACTAATATGGGAGGGTCATAAGCATCATCATCACTGTCTTCAGAACTTGAACTGCCTTTTTCAAGACTTTCATATTCATTCGCACTGTCTGAGACATCAACATCTTCTTCCTATTCAGATTCTAAATCATCATCTTCAGTAACCTCATTACTGTTCAACTGTTGCCTTACTTTGTTAGGAAGTTCTTTACCAGATGGTCTCTCTTTAATTTGAACCTCGTCCTCATTAGACGATTCAGAGTCAGAGCTTTCTTGGATTGTCATAGCTTGTAAGTGAGTATTTTCAGTATCATGTGGCTGAGCTTGTGTTTGCTTTCTTCTGTTGGAAGCTGTTTCAGCATGTTGAATTTGCTTATTTGATGTGATATTGTGTTGGTTGTGACCCTGTGATCCTTGGGATGAGCTCTTTGATTGTCGTCGTTGCGGCAGAGCATTTTCTGATCTTTGCTTAACTTTAGCAGTATGATCTAATTTGTTGGCAGCATTCTTTTTCTGTTGGATTGGTTGAGGTTGTTGTTGAGTGCTAGCTCTACCTGTTAGGGTAGTAGAGATTTTCCCCTTGTTCTTTTCCACAACATCGCCATTCTTATTTTTTCGTGACTCTTCCTGAATAGTAGTGGAAGTGAGTTTGCTAGTCTCGACATATTTTGGGTTGCCTTGCGTCTTTTTTGTAGTATGCTGACGCAACTGCTTTTGCACATCAAGAGTGGATGTGTTCTGCTTCATGTTAGTTTGAGTTCGGACAGTGTGCTACTTGGTGTTGTTCTTGATTTTTACATGATCTTTATTGCTATTCTGATGATCAACTTGCTTATCATTAAGAACTTGAGCAGGATGCTTGTTCTGGGCTTGTTCCCGTCTACTCTTGATATTAGAGGTTTGAGCAATAACAACTTGGTTAACGATGCTAGTATCATTTCCCATAGACGGTACCGAATTGGTCCTAACATTAGGGTTATCCTGGTTGGTTTGGTTCTTAGTTTTCTCAGTGCTCTTCTTTCCTTTTCTGGTAACAGTGGTAAAACCATCATCTTCATCGTGATTTTCATGTGCTTGTTTTCTCTGTTGGTTTAAATCCTCTTGCTTTTGAGCTTTAATTCTTTCATCTCTAGCTTTGTTCCTGCATTCCATTTCGAGATGTGCTTGGAGTTTACAGTAGAGACAGTATAACGGGGCATCCTGATATTCAATATCTAACTAAACCCCATCGTCAGTGCCGTCAAGCCTGGAAAAGCCAAGCCATATTTGATCCATCTTGGGTTTGAGGAGGTCTATCTCGACCTTGATTTTAGCCACATCGCCTCTAGACTTTGAGTCTGTGGCCTGATCAGGAGCAACCGCAGTTCCCACAGCATTCAAAATCCTCAAACTATGTCCCAATGAAAAAGGTGCCACGGCAGCTTATGAATAAGAATCTAAGTAGGAGCGATTGAGGTTCCCACTTCGGGTTTGAAATCCGGAGTATAATTGAGAATTTTCATAGGAGTATCACCAATGTGAATCCAACTTTTGAAAAGGATATGACTATAATCTGTTTCATTTGAAAAATCCAAATAGACATGTTGAGGGTTGAAGTAAGCCACTTTGGCAGAATCTTTGAGGTGAAATTTTGTAGCTAAAGATTTCCTTATTTCTCCACAGTAGGTTTGCCCTTGGAATATTTTTCTACTATGGTAAACTTGCATGACTCAGCTAGATTAACAAAGTAATCATTGGCAATTAAATAAACAGCTGGTTTACCTAGATGATTACTGTGAGTAATTTCCACCGGAGAGATTCTTAGACTGCTCTGCAAATTTACCTTGATCAGCTGCTGCAAAAGAAGCTTTGGAGATGTAGGATTCCATCTGTTTTTCGGCACCAGCTTGTGAAGCTATGTTGGCCCCATCTTTAGTATTATCATTGGACGTATTAGATTGATCAGCAGATTTGGGGGCTTTATCAAAATTGGAGGACATTTTTGGGAAAGAATCCTTTCGAGAATTGGTATTAGTGGTGTTGTGATTAATGGTTGTGTCACCCTTCTCGTTCTGCGTAACAGGTTCACCCGAGAAATTCTCTTTGTTCCTTACATCATCTTCAGAAGATGATTCTGGATTTCGAATAGTCTCAACACTGTTCTCGAGAGTTGGAGAAGGAACGGTGTCTTTGTGGTTGATTCGAGAGGAGGAAAGGTTTCCATCGTGGTTGAATTGGGTTGCTCCGGTGATAGTCATCTCTTTGTTTGTTACAGTTGGGGGCTGAGTAAGGGTGGAGGTGCGGATATCAGGAGGGACAGGTGGTGGTCCGTTGGGCTCTGGCCCAAATAAATCGACCGTTAGCACAGGTTAGAGAGAGAAATAATTTAGAGAGAAGGCAGCGCATTTTGATTGTTCTTTAGAGAGATTTTCTCCTCTCCTTTTTGCGTGTGTGGATATATATACATATATATCTCGTACCGTCTGGTTTCTTTTGTTTTTATCTATAGCTTGCTGATTGTGTAAGTATATTTGTGGTATGTCTTAATGAGTTGGATTAAGACATAGGTATTCTATGCTGTATTGTTCTCTTGCTTTCTTCCTTCCGGAGAGGAATACAATCCTTTTGAAATGGTGAAAGAGTTTGGAAGACAGTTATTCATTGATTTCTCCTCCTTCACAGCATAAATCCCCCTGTATGTACATTAGGGTAGGTTCTGATCTTCTTTTTTTAGTTTGGGGTGTAGTGAGACCAGTCACTCCGTCAATCTAAAGATAAATGATCTCATATCAGGTTCTTGACTTAGAGTTGGAGCCTTTTAATTTTTTTCATTTATAGGTAGACTATGAAGAAACTTCAATAGAAATAAAAACCAAGGATTAAGAAGCACTGCTACAATCTTAATCCTACTCTAATAGTTCTTATTCAAAAGTTGCATGAGACAATTAGTACAAGGTTTCATGTATCAGCAACTAAGAATTAGCTCTAGAAACTTGTCAATGTCCACAAATTAGTTGGTGCTAGTTGGGGTAAAGTACCATATTTTCTGGATCTTTTTTATAATTTATTTAATACCGGACTATCCTACAAATTAACCGGGATTTCTGACTTGCGACACAAATTTGACTCTATTGCCAACCATTGCATCATGTTCTTCAACTTTGTAGATGAAGATATATAGTCATCTGTGATTATGCACCATTTTATTGTAGTTACTGTTTTTTAGGGAATGCTTTGCCATGCTTTTTATTGTATTTTTCCATGATTTATTCACTTCTGATTATTTCTTTTTTGATCTGCTTTAATATGCTTTTCAGTGAACTGAGGGTCTATCGAAAACAACCTCTCTACCCTCCCAAGTACCCCCCCCCCCCCCACCCACCCACCCCACCCACCCACTTGTGGAATTATATGTTGTTGTTGTAGTACTCATCTTTTAAGCATCTTATCATACTTCATGCATGTGCTTTTTGAACAAGTGTTGTTCTTTTCAGAGGATGGAAAGACGGGCAGTTTTGTCATAGGCGATGTGCACTTTCCTGCATCACTTTTGAATCTTCCTTGCATAGTGGAGTCGTACAAAACTTATGATGACAACGTGCTCATTAAATCCGCAGACATTGGTCAAGTAGGGTTAGGATTAATCTTTCTTTTTCCCTTCAGTTATATGAATATGATTTTTCAATCGTCATTGTTCCTAGAATGTAAACTTTGTTGATCTGACAGATGATTATGGTGAGAGAAGAAGGTGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCAGATCTTAATGTAACAGTCTTACTTTCCTGAGAAAAACTCATTTATTTACTTTCTAGTTTGTCCCGATAGAGAGAATGTCATGGGTGGGCTATCTATTCTGTGGAATGGGGGTATGATTTTTTTTGGAGGGCTTGGGGTATGTATGTGAAAGCAAATAGGGGCTTATTCTACCTGAGGCTTCTCAGTTTATCTGGTTCTCTGCTGATAAATGAATTGGAATAAAATCTGTTCGTAAATATAGTGGAGCTCTCCTTATCCCTTGATCCGCCCTTTTCTAGTTTTATATATTTTTTCTGGTAAGTATCCTTGTACTTACAATGTGCCTGTTATACTTTTCGCAGCCTGAGCTTGTTCGGCGTGTTGAGAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTGATATCCTTTCATATTTCTTTTCTCCTCTAGTTTAAATAGAATGACACGTGGTCTATATATGAGAATGGAAGTTGCTAAATAGACTTATGTTAAATGTTTATATAGGCTATATTCTGACAAATTAGAACTGCGAGTTTTAACAAATCCTAGCTATGCTGTTGGTAAATTGACATTTGTTAGCTTGTACACCAGAGTCAGTTGGACAACTTTTGCTGGTGAAAGAACTTGTGAAAATTTCTGTTTGACTATTTACCAGGAATCGTGGTAATGTCAGGGAAACTTTAATGCTTTGAGCTTTAAAGTTTCATCTTTATCATTTTTGTTACTCCTTAACTAATCGATTACATATAGAAGTTGTCGAGCAAGAGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCTGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAATCTGAGGATTCTGATGATTCAATATAGTCGATGACATTTTTCAGCCTTTGCTATTGTTATAGTGGCTACAAGTCTTTGCTAATGTTGTAGTG</genome_strand>
        <mrna_strand>GCTTCAACAATTGGCACTATTTTGTG........................................................................................................................................................................................................................................................................................................................CCATGGATGAGCAATTTATTCTGAGGGTTCCACCTTCTGTTGCTGAGCGAATTGACCGTCTTTTAAGTGAAAATCCTTCTTCAGAAGACAAACTGGACTTGTCTTTTTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGGAAAGACGGGCAGTTTTGTCATAGGCGAGGAGCACTTTCCTGCATCACTTTTGAATCTTCCTTGCATAGTGGAGTCGTACAAAACTTATGATGACAACGTGCTCATTAAATCCGCAGACATTGGTCAA..................................................................................................ATGATTATGGTGAGAGAAGAAGGTGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCAGATCTTAAT............................................................................................................................................................................................................................................................................................................................................CCTGAGCTTGTTCGGCGTGTTGAGAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTG.........................................................................................................................................................................................................................................................................................................................................................ATATAGAAGTTGTCGAGCAAGAGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCTGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAATCTGANGATTCTGATGATTCAATATAGTCGATGACATTTTTCAGCCTTTGCTATTGTTATAGTGGCTACAAGTCTTTGCTAATGTTGTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="32997" PGL_stop="34764"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32997" e_stop="33543"/>
            <exon e_start="33716" e_stop="34000"/>
            <exon e_start="34079" e_stop="34283"/>
            <exon e_start="34399" e_stop="34670"/>
            <exon e_start="34757" e_stop="34764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.985"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="0.993"/>
          <exon-intron don_prob="0.974" acc_prob="0.977" e_score="0.995"/>
          <exon-intron don_prob="0.818" acc_prob="0.939" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="32997" e_stop="33543" e_length="547"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33544" i_stop="33715" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="33716" e_stop="34000" e_length="285"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="34001" i_stop="34078" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="34079" e_stop="34283" e_length="205"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.977">
            <gDNA_intron_boundary i_start="34284" i_stop="34398" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="34399" e_stop="34670" e_length="272"/>
          </exon>
          <intron i_serial="4" don_prob="0.818" acc_prob="0.939">
            <gDNA_intron_boundary i_start="34671" i_stop="34756" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34757" e_stop="34764" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32997" stop="33543"/>
              <exon start="33716" stop="34000"/>
              <exon start="34079" stop="34283"/>
              <exon start="34399" stop="34670"/>
              <exon start="34757" stop="34764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTGGTGCAACTCTAGGTGAAAGTCTTCGAAGTCTTGATGTTGAAATTGGAAGTGCTGATGGGCATGATGATGGTGGAGATAGGCAAGGTTCAGCAGATGCTAGAACTAGGAGGACTAACGTATCGTTTGGAAATTCTACTCAGGTAAGTGCGAGAGATGTTGCCCTTCACAGTGTATCTGAAGCTTCAGAACATCCAAATCAAGAAGCAGAACAAGGTGGACCCAATGATGAACAGCAACGTAATGTAGATGCTGATTCTGGATCAATTGATCCTGCATTTCTTGAGGCGCTTCCTGAGGAGTTGCGAGCCGAGGTTCTCTCAGCTCAACAGGGTCAAGCAACTCAACCACCAAATTCTGAGCCTCAAAATGGTGGAGATATTGATCCAGAATTTCTGGCAGCCCTTCCGTCTGACATCAGAGAAGAAGTGTTGGCACAGCAAAGGGCACAGCGGCTGCAGCAGTCACAAGAATTAGAAGGCCAGCCTGTTGAGATGGACACTGTGTCAATTATTGCTACATTCCCTTCAGAACTACGGGAAGAG : GTCCTTCTGACATCTTCTGATGCCATTCTTGCTAATTTAACACCTGCTCTTGTGGCGGAAGCAAATATGTTGCGTGAGAGATTTGCACGTAGGTATAACCGAACACTTTTTGGTATGTATCCTAGAAACCGTAGAGGCGACTCTAGGCGGAATGAACAATTGGACAGGGCTGGTGGAACCCTTTCACGTAGATCAGCCGGAAGTAAGCCTCTGGAGGCTGATGGGTCTCCCTTAGTTGACACTGAGGGTTTAAGAGCTTTGGTGAGGTTGCTCCGCGTATTCCAG : CCAATATACAAAGTTCCTCTACAGAGGCTGATGTTGAATCTCAGTGCACATGCTGAAACAAGAACTGCTTTAGTGAAAATATTTATGGACTTGTTGATGCTTGATGTCGGACAGCCTGCTACTGATCTGAATACTGCTGAACCCCCATATCGACTATATGGTTGCCAAAGTAATGTGATGTATTCACGTCCTCAACATCTTGATG : GAATTCCTCCATTACTATCTCGTCGTGTTCTTGAGACACTTACATACCTGGCAAAGAACCATTCTTTAGTTGCAAAGACTCTACTTGAATTCAGGCTCCCTCGACCAGTGCTGGAAGGGCCAATAGTTCCGGATCAGAGGCGGGGAAAAGCTGTTATGGTTGAGGCTGATGGACCAGATAGATGGCAGCTTGAAGGACAAGTATCTCTGGCATTGCTTTTGGGCCTCTTGAACCATCCCCTTTATTTGAGAAGTGTTGCACATCTTGAGCAG : CTGTTAAA</gDNA_template>
            <first_frame> K  W  C  N  S  R  *  K  S  S  K  S  *  C  *  N  W  K  C  *  W  A  *  *  W  W  R  *  A  R  F  S  R  C  *  N  *  E  D  *  R  I  V  W  K  F  Y  S  G  K  C  E  R  C  C  P  S  Q  C  I  *  S  F  R  T  S  K  S  R  S  R  T  R  W  T  Q  *  *  T  A  T  *  C  R  C  *  F  W  I  N  *  S  C  I  S  *  G  A  S  *  G  V  A  S  R  G  S  L  S  S  T  G  S  S  N  S  T  T  K  F  *  A  S  K  W  W  R  Y  *  S  R  I  S  G  S  P  S  V  *  H  Q  R  R  S  V  G  T  A  K  G  T  A  A  A  A  V  T  R  I  R  R  P  A  C  *  D  G  H  C  V  N  Y  C  Y  I  P  F  R  T  T  G  R   : G  P  S  D  I  F  *  C  H  S  C  *  F  N  T  C  S  C  G  G  S  K  Y  V  A  *  E  I  C  T  *  V  *  P  N  T  F  W  Y  V  S  *  K  P  *  R  R  L  *  A  E  *  T  I  G  Q  G  W  W  N  P  F  T  *  I  S  R  K  *  A  S  G  G  *  W  V  S  L  S  *  H  *  G  F  K  S  F  G  E  V  A  P  R  I  P   : A  N  I  Q  S  S  S  T  E  A  D  V  E  S  Q  C  T  C  *  N  K  N  C  F  S  E  N  I  Y  G  L  V  D  A  *  C  R  T  A  C  Y  *  S  E  Y  C  *  T  P  I  S  T  I  W  L  P  K  *  C  D  V  F  T  S  S  T  S  *  W :   N  S  S  I  T  I  S  S  C  S  *  D  T  Y  I  P  G  K  E  P  F  F  S  C  K  D  S  T  *  I  Q  A  P  S  T  S  A  G  R  A  N  S  S  G  S  E  A  G  K  S  C  Y  G  *  G  *  W  T  R  *  M  A  A  *  R  T  S  I  S  G  I  A  F  G  P  L  E  P  S  P  L  F  E  K  C  C  T  S  *  A   : A  V  K </first_frame>
            <second_frame>  S  G  A  T  L  G  E  S  L  R  S  L  D  V  E  I  G  S  A  D  G  H  D  D  G  G  D  R  Q  G  S  A  D  A  R  T  R  R  T  N  V  S  F  G  N  S  T  Q  V  S  A  R  D  V  A  L  H  S  V  S  E  A  S  E  H  P  N  Q  E  A  E  Q  G  G  P  N  D  E  Q  Q  R  N  V  D  A  D  S  G  S  I  D  P  A  F  L  E  A  L  P  E  E  L  R  A  E  V  L  S  A  Q  Q  G  Q  A  T  Q  P  P  N  S  E  P  Q  N  G  G  D  I  D  P  E  F  L  A  A  L  P  S  D  I  R  E  E  V  L  A  Q  Q  R  A  Q  R  L  Q  Q  S  Q  E  L  E  G  Q  P  V  E  M  D  T  V  S  I  I  A  T  F  P  S  E  L  R  E  E  :  V  L  L  T  S  S  D  A  I  L  A  N  L  T  P  A  L  V  A  E  A  N  M  L  R  E  R  F  A  R  R  Y  N  R  T  L  F  G  M  Y  P  R  N  R  R  G  D  S  R  R  N  E  Q  L  D  R  A  G  G  T  L  S  R  R  S  A  G  S  K  P  L  E  A  D  G  S  P  L  V  D  T  E  G  L  R  A  L  V  R  L  L  R  V  F  Q  :  P  I  Y  K  V  P  L  Q  R  L  M  L  N  L  S  A  H  A  E  T  R  T  A  L  V  K  I  F  M  D  L  L  M  L  D  V  G  Q  P  A  T  D  L  N  T  A  E  P  P  Y  R  L  Y  G  C  Q  S  N  V  M  Y  S  R  P  Q  H  L  D   : G  I  P  P  L  L  S  R  R  V  L  E  T  L  T  Y  L  A  K  N  H  S  L  V  A  K  T  L  L  E  F  R  L  P  R  P  V  L  E  G  P  I  V  P  D  Q  R  R  G  K  A  V  M  V  E  A  D  G  P  D  R  W  Q  L  E  G  Q  V  S  L  A  L  L  L  G  L  L  N  H  P  L  Y  L  R  S  V  A  H  L  E  Q  :  L  L   </second_frame>
            <third_frame>   V  V  Q  L  *  V  K  V  F  E  V  L  M  L  K  L  E  V  L  M  G  M  M  M  V  E  I  G  K  V  Q  Q  M  L  E  L  G  G  L  T  Y  R  L  E  I  L  L  R  *  V  R  E  M  L  P  F  T  V  Y  L  K  L  Q  N  I  Q  I  K  K  Q  N  K  V  D  P  M  M  N  S  N  V  M  *  M  L  I  L  D  Q  L  I  L  H  F  L  R  R  F  L  R  S  C  E  P  R  F  S  Q  L  N  R  V  K  Q  L  N  H  Q  I  L  S  L  K  M  V  E  I  L  I  Q  N  F  W  Q  P  F  R  L  T  S  E  K  K  C  W  H  S  K  G  H  S  G  C  S  S  H  K  N  *  K  A  S  L  L  R  W  T  L  C  Q  L  L  L  H  S  L  Q  N  Y  G  K  R :   S  F  *  H  L  L  M  P  F  L  L  I  *  H  L  L  L  W  R  K  Q  I  C  C  V  R  D  L  H  V  G  I  T  E  H  F  L  V  C  I  L  E  T  V  E  A  T  L  G  G  M  N  N  W  T  G  L  V  E  P  F  H  V  D  Q  P  E  V  S  L  W  R  L  M  G  L  P  *  L  T  L  R  V  *  E  L  W  *  G  C  S  A  Y  S  S :   Q  Y  T  K  F  L  Y  R  G  *  C  *  I  S  V  H  M  L  K  Q  E  L  L  *  *  K  Y  L  W  T  C  *  C  L  M  S  D  S  L  L  L  I  *  I  L  L  N  P  H  I  D  Y  M  V  A  K  V  M  *  C  I  H  V  L  N  I  L  M  :  E  F  L  H  Y  Y  L  V  V  F  L  R  H  L  H  T  W  Q  R  T  I  L  *  L  Q  R  L  Y  L  N  S  G  S  L  D  Q  C  W  K  G  Q  *  F  R  I  R  G  G  E  K  L  L  W  L  R  L  M  D  Q  I  D  G  S  L  K  D  K  Y  L  W  H  C  F  W  A  S  *  T  I  P  F  I  *  E  V  L  H  I  L  S  S :   C  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053M02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32998" stop="33543"/>
                    <exon start="33716" stop="34000"/>
                    <exon start="34079" stop="34283"/>
                    <exon start="34399" stop="34670"/>
                    <exon start="34757" stop="34762"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1314</number_coding_nucleotides>
                  <number_encoded_amino_acids>438</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGATLGESLRSLDVEIGSADGHDDGGDRQGSADARTRRTNVSFGNSTQVSARDVALHSVSEASEHPNQEAEQGGPNDEQQRNVDADSGSIDPAFLEALPEELRAEVLSAQQGQATQPPNSEPQNGGDIDPEFLAALPSDIREEVLAQQRAQRLQQSQELEGQPVEMDTVSIIATFPSELREEVLLTSSDAILANLTPALVAEANMLRERFARRYNRTLFGMYPRNRRGDSRRNEQLDRAGGTLSRRSAGSKPLEADGSPLVDTEGLRALVRLLRVFQPIYKVPLQRLMLNLSAHAETRTALVKIFMDLLMLDVGQPATDLNTAEPPYRLYGCQSNVMYSRPQHLDGIPPLLSRRVLETLTYLAKNHSLVAKTLLEFRLPRPVLEGPIVPDQRRGKAVMVEADGPDRWQLEGQVSLALLLGLLNHPLYLRSVAHLEQLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="34826" PGL_stop="35741"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34826" e_stop="35031"/>
            <exon e_start="35472" e_stop="35741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.966" e_score="0.995"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="34826" e_stop="35031" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.966">
            <gDNA_intron_boundary i_start="35032" i_stop="35471" i_length="440"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="35472" e_stop="35741" e_length="270"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34826" stop="35031"/>
              <exon start="35472" stop="35741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATCCTCTACAGAGCAACTGCCTGGTCCTCCAGTCCAATCTGCTGCTGAAATGAATACTGAATCTCATGCAGCTTCATCTGAGGTTGAGGACAAATCTGGAGCATCGTCCTCTATCACAGGCAGAGACCAAAGTACTGAAAGTATTCTACTCAGTCTACCACAATTAGAACTTCGACGTCTGTGCTCATTGCTTGCCAGAGAAGG : TCTTTCAGACAATGCTTACTCTTTGGTAGCTGAGGTACTGAAAAAGTTGGTGGCCATAGCTCCTGCCATTTGTCATTTATTTATTACTGAGCTTGCTGGCTCGGTGCAAAGTCTGACCAGATCTGCGATGGATGAGCTAAACAAGTTTAGGGAAGTGGAAAAAGCACTGCTCAGTACCACTTCAACTGATGGCGCTGTGATACTCAGGGTTTTACAAGCATTAAGCTCTCTTGTTGCTTCAATTGGTGACAAGAACAACGAGAATCAAAT</gDNA_template>
            <first_frame> T  S  S  T  E  Q  L  P  G  P  P  V  Q  S  A  A  E  M  N  T  E  S  H  A  A  S  S  E  V  E  D  K  S  G  A  S  S  S  I  T  G  R  D  Q  S  T  E  S  I  L  L  S  L  P  Q  L  E  L  R  R  L  C  S  L  L  A  R  E  G :   L  S  D  N  A  Y  S  L  V  A  E  V  L  K  K  L  V  A  I  A  P  A  I  C  H  L  F  I  T  E  L  A  G  S  V  Q  S  L  T  R  S  A  M  D  E  L  N  K  F  R  E  V  E  K  A  L  L  S  T  T  S  T  D  G  A  V  I  L  R  V  L  Q  A  L  S  S  L  V  A  S  I  G  D  K  N  N  E  N  Q   </first_frame>
            <second_frame>  H  P  L  Q  S  N  C  L  V  L  Q  S  N  L  L  L  K  *  I  L  N  L  M  Q  L  H  L  R  L  R  T  N  L  E  H  R  P  L  S  Q  A  E  T  K  V  L  K  V  F  Y  S  V  Y  H  N  *  N  F  D  V  C  A  H  C  L  P  E  K   : V  F  Q  T  M  L  T  L  W  *  L  R  Y  *  K  S  W  W  P  *  L  L  P  F  V  I  Y  L  L  L  S  L  L  A  R  C  K  V  *  P  D  L  R  W  M  S  *  T  S  L  G  K  W  K  K  H  C  S  V  P  L  Q  L  M  A  L  *  Y  S  G  F  Y  K  H  *  A  L  L  L  L  Q  L  V  T  R  T  T  R  I  K  </second_frame>
            <third_frame>   I  L  Y  R  A  T  A  W  S  S  S  P  I  C  C  *  N  E  Y  *  I  S  C  S  F  I  *  G  *  G  Q  I  W  S  I  V  L  Y  H  R  Q  R  P  K  Y  *  K  Y  S  T  Q  S  T  T  I  R  T  S  T  S  V  L  I  A  C  Q  R  R  :  S  F  R  Q  C  L  L  F  G  S  *  G  T  E  K  V  G  G  H  S  S  C  H  L  S  F  I  Y  Y  *  A  C  W  L  G  A  K  S  D  Q  I  C  D  G  *  A  K  Q  V  *  G  S  G  K  S  T  A  Q  Y  H  F  N  *  W  R  C  D  T  Q  G  F  T  S  I  K  L  S  C  C  F  N  W  *  Q  E  Q  R  E  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053M02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34826" stop="35031"/>
                    <exon start="35472" stop="35739"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSSTEQLPGPPVQSAAEMNTESHAASSEVEDKSGASSSITGRDQSTESILLSLPQLELRRLCSLLAREGLSDNAYSLVAEVLKKLVAIAPAICHLFITELAGSVQSLTRSAMDELNKFREVEKALLSTTSTDGAVILRVLQALSSLVASIGDKNNENQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="35881" PGL_stop="39789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35881" e_stop="36591"/>
            <exon e_start="36675" e_stop="36821"/>
            <exon e_start="36896" e_stop="36976"/>
            <exon e_start="37053" e_stop="37278"/>
            <exon e_start="37395" e_stop="37534"/>
            <exon e_start="37618" e_stop="37724"/>
            <exon e_start="38169" e_stop="38436"/>
            <exon e_start="39754" e_stop="39789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.926" acc_prob="0.999" e_score="0.999"/>
          <exon-intron don_prob="0.980" acc_prob="0.995" e_score="0.993"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="0.996"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.694"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="35881" e_stop="36591" e_length="711"/>
          </exon>
          <intron i_serial="1" don_prob="0.926" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36592" i_stop="36674" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="36675" e_stop="36821" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36822" i_stop="36895" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36896" e_stop="36976" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36977" i_stop="37052" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="37053" e_stop="37278" e_length="226"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="37279" i_stop="37394" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37395" e_stop="37534" e_length="140"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37535" i_stop="37617" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="37618" e_stop="37724" e_length="107"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37725" i_stop="38168" i_length="444"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="38169" e_stop="38436" e_length="268"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38437" i_stop="39753" i_length="1317"/>
          </intron>
          <exon e_serial="8" e_score="0.694">
            <gDNA_exon_boundary e_start="39754" e_stop="39789" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35881" stop="36591"/>
              <exon start="36675" stop="36821"/>
              <exon start="36896" stop="36976"/>
              <exon start="37053" stop="37278"/>
              <exon start="37395" stop="37534"/>
              <exon start="37618" stop="37724"/>
              <exon start="38169" stop="38436"/>
              <exon start="39754" stop="39789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCTATTGTTACCTCATCTAAACCTGCTGGAGCAATGTCTTCGCTTCCTGCAGGCTCACAAAACATTTTACCGTACGTAGAGTCCTTTTTTGTGATGTGTGAGAAGTTGCATCCTGGGCATTTGGGTGCAGGACAGGAGTTCAGTATTGCGACAGTTCCTGATCCAGAAGAGGCTACTGCTTCTGCTATGCAGCCAAAAACACCTACATCTGCAACAAAAGTTGATGAGAAGCACATTGCTTTTGTAAAATTTGCAGAGAAGCACAAAAAACTTCTTAATGCTTTTGTTCGGCAGAATCCTGGACTACTGGAGAAGTCTTTCTCGATCATGCTGAAGGTTCCTCGTTTTGTTGATTTTGACAATAAAAGGTCCTACTTCAGATCTAAGATTAAACATCAACATGATCATCATCACAGTCCTCTGAGAATTTCTGTGAGAAGAGCTTATATACTTGAAGATTCATATAATCAGCTGCGCATGAGGACAACTCAAGAATTGAAAGGGAGATTGACTGTACATTTCCAAGGGGAAGAAGGAATTGATGCTGGTGGACTTACTAGGGAATGGTATCAGTTATTGTCCAGAGTAATTTTTGACAAGGGAGCGCTATTGTTTACTACAGTTGGCAATGAAGCAACATTTCAGCCAAATCCCAACTCTGTGTACCAAACTGAGCACCTCTCATACTTCAAATTTGTTGGGCGAGTT : GTTGGGAAGGCACTATTTGACGGCCAACTTCTTGATGTTCATTTTACACGGTCCTTCTACAAGCACATACTTGGTGCTAAAGTGACATATCATGATATCGAAGCTATTGATCCTGACTACTTCAAAAATTTGAAATGGCTGCTTGAG : AATGACATCAGTGATATTTTAGACCTTACATTCAGTATTGATGCTGATGAAGAGAAGTTGATACTTTATGAACGCAATGAG : GTGACTGATTATGAACTAATCCCAGGTGGACGAAATATCAGAGTCACGGAGGAAAATAAGCAACAGTATGTCGACTTGGTTGCTGAGCATCGGTTGACGACTGCTATCCGTCCTCAGATAAATGCATTTTTGGAAGGATTCAGTGAATTGATTCCGCGAGAGCTGATCTCTATTTTTCATGACAAGGAACTTGAGTTGTTAATTAGCGGTCTTCCAGACATCGATC : TTGATGACTTAAGGGCAAATACAGAATATTCTGGATACAGCCCAGGTTCACCTGTTATTCAGTGGTTTTGGGAAGTTGTTCAAGCTTTTAGCAAGGAAGACAAAGCTCGCCTTCTTCAATTTGTCACTGGAACCTCAAAG : GTGCCATTGGAAGGGTTTAGTGCACTGCAAGGAATTTCAGGTTCCCAGAAATTTCAGATCCACAAAGCTTATGGCAGTGCTGATCACCTGCCTTCAGCACATACATG : TTTCAACCAGTTGGATCTACCAGAGTATCCCTCCAAAGAGCATCTAGAGGAGAGACTACTGCTTGCCATTCATGAAGCTAACGAAGGATTTGGATTTGGTTAAAACAACAATGGGTGGTCTGAATTAGATTCTGTAGATAATTTCCATGTTAAAAAAGAGAGTTTTTTTTTTATATATACAGGAGAACAGTCTAAGGGCATTTTAAGTCTGTGAGATACCTGTCTATAATGCTGTACAGTCTATTTGCTATGCGAAATGATCCTGGCA : TGTAAAAATAAAATAAAAATAAAAGTCCAAAAAAAA</gDNA_template>
            <first_frame> S  S  I  V  T  S  S  K  P  A  G  A  M  S  S  L  P  A  G  S  Q  N  I  L  P  Y  V  E  S  F  F  V  M  C  E  K  L  H  P  G  H  L  G  A  G  Q  E  F  S  I  A  T  V  P  D  P  E  E  A  T  A  S  A  M  Q  P  K  T  P  T  S  A  T  K  V  D  E  K  H  I  A  F  V  K  F  A  E  K  H  K  K  L  L  N  A  F  V  R  Q  N  P  G  L  L  E  K  S  F  S  I  M  L  K  V  P  R  F  V  D  F  D  N  K  R  S  Y  F  R  S  K  I  K  H  Q  H  D  H  H  H  S  P  L  R  I  S  V  R  R  A  Y  I  L  E  D  S  Y  N  Q  L  R  M  R  T  T  Q  E  L  K  G  R  L  T  V  H  F  Q  G  E  E  G  I  D  A  G  G  L  T  R  E  W  Y  Q  L  L  S  R  V  I  F  D  K  G  A  L  L  F  T  T  V  G  N  E  A  T  F  Q  P  N  P  N  S  V  Y  Q  T  E  H  L  S  Y  F  K  F  V  G  R  V  :  V  G  K  A  L  F  D  G  Q  L  L  D  V  H  F  T  R  S  F  Y  K  H  I  L  G  A  K  V  T  Y  H  D  I  E  A  I  D  P  D  Y  F  K  N  L  K  W  L  L  E  :  N  D  I  S  D  I  L  D  L  T  F  S  I  D  A  D  E  E  K  L  I  L  Y  E  R  N  E  :  V  T  D  Y  E  L  I  P  G  G  R  N  I  R  V  T  E  E  N  K  Q  Q  Y  V  D  L  V  A  E  H  R  L  T  T  A  I  R  P  Q  I  N  A  F  L  E  G  F  S  E  L  I  P  R  E  L  I  S  I  F  H  D  K  E  L  E  L  L  I  S  G  L  P  D  I  D   : L  D  D  L  R  A  N  T  E  Y  S  G  Y  S  P  G  S  P  V  I  Q  W  F  W  E  V  V  Q  A  F  S  K  E  D  K  A  R  L  L  Q  F  V  T  G  T  S  K  :  V  P  L  E  G  F  S  A  L  Q  G  I  S  G  S  Q  K  F  Q  I  H  K  A  Y  G  S  A  D  H  L  P  S  A  H  T  C :   F  N  Q  L  D  L  P  E  Y  P  S  K  E  H  L  E  E  R  L  L  L  A  I  H  E  A  N  E  G  F  G  F  G  *  N  N  N  G  W  S  E  L  D  S  V  D  N  F  H  V  K  K  E  S  F  F  F  I  Y  T  G  E  Q  S  K  G  I  L  S  L  *  D  T  C  L  *  C  C  T  V  Y  L  L  C  E  M  I  L  A  :  C  K  N  K  I  K  I  K  V  Q  K  K </first_frame>
            <second_frame>  H  L  L  L  P  H  L  N  L  L  E  Q  C  L  R  F  L  Q  A  H  K  T  F  Y  R  T  *  S  P  F  L  *  C  V  R  S  C  I  L  G  I  W  V  Q  D  R  S  S  V  L  R  Q  F  L  I  Q  K  R  L  L  L  L  L  C  S  Q  K  H  L  H  L  Q  Q  K  L  M  R  S  T  L  L  L  *  N  L  Q  R  S  T  K  N  F  L  M  L  L  F  G  R  I  L  D  Y  W  R  S  L  S  R  S  C  *  R  F  L  V  L  L  I  L  T  I  K  G  P  T  S  D  L  R  L  N  I  N  M  I  I  I  T  V  L  *  E  F  L  *  E  E  L  I  Y  L  K  I  H  I  I  S  C  A  *  G  Q  L  K  N  *  K  G  D  *  L  Y  I  S  K  G  K  K  E  L  M  L  V  D  L  L  G  N  G  I  S  Y  C  P  E  *  F  L  T  R  E  R  Y  C  L  L  Q  L  A  M  K  Q  H  F  S  Q  I  P  T  L  C  T  K  L  S  T  S  H  T  S  N  L  L  G  E  L :   L  G  R  H  Y  L  T  A  N  F  L  M  F  I  L  H  G  P  S  T  S  T  Y  L  V  L  K  *  H  I  M  I  S  K  L  L  I  L  T  T  S  K  I  *  N  G  C  L  R :   M  T  S  V  I  F  *  T  L  H  S  V  L  M  L  M  K  R  S  *  Y  F  M  N  A  M  R :   *  L  I  M  N  *  S  Q  V  D  E  I  S  E  S  R  R  K  I  S  N  S  M  S  T  W  L  L  S  I  G  *  R  L  L  S  V  L  R  *  M  H  F  W  K  D  S  V  N  *  F  R  E  S  *  S  L  F  F  M  T  R  N  L  S  C  *  L  A  V  F  Q  T  S  I  :  L  M  T  *  G  Q  I  Q  N  I  L  D  T  A  Q  V  H  L  L  F  S  G  F  G  K  L  F  K  L  L  A  R  K  T  K  L  A  F  F  N  L  S  L  E  P  Q  R :   C  H  W  K  G  L  V  H  C  K  E  F  Q  V  P  R  N  F  R  S  T  K  L  M  A  V  L  I  T  C  L  Q  H  I  H   : V  S  T  S  W  I  Y  Q  S  I  P  P  K  S  I  *  R  R  D  Y  C  L  P  F  M  K  L  T  K  D  L  D  L  V  K  T  T  M  G  G  L  N  *  I  L  *  I  I  S  M  L  K  K  R  V  F  F  L  Y  I  Q  E  N  S  L  R  A  F  *  V  C  E  I  P  V  Y  N  A  V  Q  S  I  C  Y  A  K  *  S  W  H :   V  K  I  K  *  K  *  K  S  K  K   </second_frame>
            <third_frame>   I  Y  C  Y  L  I  *  T  C  W  S  N  V  F  A  S  C  R  L  T  K  H  F  T  V  R  R  V  L  F  C  D  V  *  E  V  A  S  W  A  F  G  C  R  T  G  V  Q  Y  C  D  S  S  *  S  R  R  G  Y  C  F  C  Y  A  A  K  N  T  Y  I  C  N  K  S  *  *  E  A  H  C  F  C  K  I  C  R  E  A  Q  K  T  S  *  C  F  C  S  A  E  S  W  T  T  G  E  V  F  L  D  H  A  E  G  S  S  F  C  *  F  *  Q  *  K  V  L  L  Q  I  *  D  *  T  S  T  *  S  S  S  Q  S  S  E  N  F  C  E  K  S  L  Y  T  *  R  F  I  *  S  A  A  H  E  D  N  S  R  I  E  R  E  I  D  C  T  F  P  R  G  R  R  N  *  C  W  W  T  Y  *  G  M  V  S  V  I  V  Q  S  N  F  *  Q  G  S  A  I  V  Y  Y  S  W  Q  *  S  N  I  S  A  K  S  Q  L  C  V  P  N  *  A  P  L  I  L  Q  I  C  W  A  S   : C  W  E  G  T  I  *  R  P  T  S  *  C  S  F  Y  T  V  L  L  Q  A  H  T  W  C  *  S  D  I  S  *  Y  R  S  Y  *  S  *  L  L  Q  K  F  E  M  A  A  *   : E  *  H  Q  *  Y  F  R  P  Y  I  Q  Y  *  C  *  *  R  E  V  D  T  L  *  T  Q  *   : G  D  *  L  *  T  N  P  R  W  T  K  Y  Q  S  H  G  G  K  *  A  T  V  C  R  L  G  C  *  A  S  V  D  D  C  Y  P  S  S  D  K  C  I  F  G  R  I  Q  *  I  D  S  A  R  A  D  L  Y  F  S  *  Q  G  T  *  V  V  N  *  R  S  S  R  H  R  S :   *  *  L  K  G  K  Y  R  I  F  W  I  Q  P  R  F  T  C  Y  S  V  V  L  G  S  C  S  S  F  *  Q  G  R  Q  S  S  P  S  S  I  C  H  W  N  L  K   : G  A  I  G  R  V  *  C  T  A  R  N  F  R  F  P  E  I  S  D  P  Q  S  L  W  Q  C  *  S  P  A  F  S  T  Y  M  :  F  Q  P  V  G  S  T  R  V  S  L  Q  R  A  S  R  G  E  T  T  A  C  H  S  *  S  *  R  R  I  W  I  W  L  K  Q  Q  W  V  V  *  I  R  F  C  R  *  F  P  C  *  K  R  E  F  F  F  Y  I  Y  R  R  T  V  *  G  H  F  K  S  V  R  Y  L  S  I  M  L  Y  S  L  F  A  M  R  N  D  P  G   : M  *  K  *  N  K  N  K  S  P  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053M02.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35881" stop="36591"/>
                    <exon start="36675" stop="36821"/>
                    <exon start="36896" stop="36976"/>
                    <exon start="37053" stop="37278"/>
                    <exon start="37395" stop="37534"/>
                    <exon start="37618" stop="37724"/>
                    <exon start="38169" stop="38271"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1512</number_coding_nucleotides>
                  <number_encoded_amino_acids>504</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSIVTSSKPAGAMSSLPAGSQNILPYVESFFVMCEKLHPGHLGAGQEFSIATVPDPEEATASAMQPKTPTSATKVDEKHIAFVKFAEKHKKLLNAFVRQNPGLLEKSFSIMLKVPRFVDFDNKRSYFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRTTQELKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNEATFQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGAKVTYHDIEAIDPDYFKNLKWLLENDISDILDLTFSIDADEEKLILYERNEVTDYELIPGGRNIRVTEENKQQYVDLVAEHRLTTAIRPQINAFLEGFSELIPRELISIFHDKELELLISGLPDIDLDDLRANTEYSGYSPGSPVIQWFWEVVQAFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSADHLPSAHTCFNQLDLPEYPSKEHLEERLLLAIHEANEGFGFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="55112" PGL_stop="47173"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55112" e_stop="55087"/>
            <exon e_start="54774" e_stop="54664"/>
            <exon e_start="48497" e_stop="48364"/>
            <exon e_start="48265" e_stop="48146"/>
            <exon e_start="47813" e_stop="47744"/>
            <exon e_start="47398" e_stop="47173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.593" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.830" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="0.985"/>
          <exon-intron don_prob="0.983" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55112" e_stop="55087" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.593" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55086" i_stop="54775" i_length="312"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54774" e_stop="54664" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.830" acc_prob="0.996">
            <gDNA_intron_boundary i_start="54663" i_stop="48498" i_length="6166"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="48497" e_stop="48364" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48363" i_stop="48266" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48265" e_stop="48146" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48145" i_stop="47814" i_length="332"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47813" e_stop="47744" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47743" i_stop="47399" i_length="345"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="47398" e_stop="47173" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55112" stop="55087"/>
              <exon start="54774" stop="54664"/>
              <exon start="48497" stop="48364"/>
              <exon start="48265" stop="48146"/>
              <exon start="47813" stop="47744"/>
              <exon start="47398" stop="47173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340407" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTCAACAATTGGCACTATTTTGTG : CCATGGATGAGCAATTTATTCTGAGGGTTCCACCTTCTGTTGCTGAGCGAATTGACCGTCTTTTAAGTGAAAATCCTTCTTCAGAAGACAAACTGGACTTGTCTTTTTCTG : AGGATGGAAAGACGGGCAGTTTTGTCATAGGCGATGTGCACTTTCCTGCATCACTTTTGAATCTTCCTTGCATAGTGGAGTCGTACAAAACTTATGATGACAACGTGCTCATTAAATCCGCAGACATTGGTCAA : ATGATTATGGTGAGAGAAGAAGGTGATCCTGTTCCAGATGTGGTGGAATATAGACATGGCCTCACACCTCCAATGAGAGATGCACGAAGACGAAGATTTCGGAGAGAGCCAGATCTTAAT : CCTGAGCTTGTTCGGCGTGTTGAGAAAGACTTGCAGAACATAATGTCTGGTGGAACAGCTGAGAATATTG : ATATAGAAGTTGTCGAGCAAGAGGAAGGAGGTGAAGCAAGTGCACGCCATGTGAACAAGAAAGTGGCACAACCTGCAACAAAGCCTGACATTTCTGAGCCCGGGACAGCTGGTGAGGATCCTGATAGAACTGAATCTGAGGATTCTGATGATTCAATATAGTCGATGACATTTTTCAGCCTTTGCTATTGTTATAGTGGCTACAAGTCTTTGCTAATGTTGTAGTG</gDNA_template>
            <first_frame> A  S  T  I  G  T  I  L  C :   H  G  *  A  I  Y  S  E  G  S  T  F  C  C  *  A  N  *  P  S  F  K  *  K  S  F  F  R  R  Q  T  G  L  V  F  F  * :   G  W  K  D  G  Q  F  C  H  R  R  C  A  L  S  C  I  T  F  E  S  S  L  H  S  G  V  V  Q  N  L  *  *  Q  R  A  H  *  I  R  R  H  W  S   : N  D  Y  G  E  R  R  R  *  S  C  S  R  C  G  G  I  *  T  W  P  H  T  S  N  E  R  C  T  K  T  K  I  S  E  R  A  R  S  *   : S  *  A  C  S  A  C  *  E  R  L  A  E  H  N  V  W  W  N  S  *  E  Y  * :   Y  R  S  C  R  A  R  G  R  R  *  S  K  C  T  P  C  E  Q  E  S  G  T  T  C  N  K  A  *  H  F  *  A  R  D  S  W  *  G  S  *  *  N  *  I  *  G  F  *  *  F  N  I  V  D  D  I  F  Q  P  L  L  L  L  *  W  L  Q  V  F  A  N  V  V  V </first_frame>
            <second_frame>  L  Q  Q  L  A  L  F  C   : A  M  D  E  Q  F  I  L  R  V  P  P  S  V  A  E  R  I  D  R  L  L  S  E  N  P  S  S  E  D  K  L  D  L  S  F  S   : E  D  G  K  T  G  S  F  V  I  G  D  V  H  F  P  A  S  L  L  N  L  P  C  I  V  E  S  Y  K  T  Y  D  D  N  V  L  I  K  S  A  D  I  G  Q  :  M  I  M  V  R  E  E  G  D  P  V  P  D  V  V  E  Y  R  H  G  L  T  P  P  M  R  D  A  R  R  R  R  F  R  R  E  P  D  L  N  :  P  E  L  V  R  R  V  E  K  D  L  Q  N  I  M  S  G  G  T  A  E  N  I   : D  I  E  V  V  E  Q  E  E  G  G  E  A  S  A  R  H  V  N  K  K  V  A  Q  P  A  T  K  P  D  I  S  E  P  G  T  A  G  E  D  P  D  R  T  E  S  E  D  S  D  D  S  I  *  S  M  T  F  F  S  L  C  Y  C  Y  S  G  Y  K  S  L  L  M  L  *   </second_frame>
            <third_frame>   F  N  N  W  H  Y  F  V  :  P  W  M  S  N  L  F  *  G  F  H  L  L  L  L  S  E  L  T  V  F  *  V  K  I  L  L  Q  K  T  N  W  T  C  L  F  L  :  R  M  E  R  R  A  V  L  S  *  A  M  C  T  F  L  H  H  F  *  I  F  L  A  *  W  S  R  T  K  L  M  M  T  T  C  S  L  N  P  Q  T  L  V  K :   *  L  W  *  E  K  K  V  I  L  F  Q  M  W  W  N  I  D  M  A  S  H  L  Q  *  E  M  H  E  D  E  D  F  G  E  S  Q  I  L  I :   L  S  L  F  G  V  L  R  K  T  C  R  T  *  C  L  V  E  Q  L  R  I  L  :  I  *  K  L  S  S  K  R  K  E  V  K  Q  V  H  A  M  *  T  R  K  W  H  N  L  Q  Q  S  L  T  F  L  S  P  G  Q  L  V  R  I  L  I  E  L  N  L  R  I  L  M  I  Q  Y  S  R  *  H  F  S  A  F  A  I  V  I  V  A  T  S  L  C  *  C  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053M02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55111" stop="55087"/>
                    <exon start="54774" stop="54664"/>
                    <exon start="48497" stop="48364"/>
                    <exon start="48265" stop="48146"/>
                    <exon start="47813" stop="47744"/>
                    <exon start="47398" stop="47238"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQQLALFCAMDEQFILRVPPSVAERIDRLLSENPSSEDKLDLSFSEDGKTGSFVIGDVHFPASLLNLPCIVESYKTYDDNVLIKSADIGQMIMVREEGDPVPDVVEYRHGLTPPMRDARRRRFRREPDLNPELVRRVEKDLQNIMSGGTAENIDIEVVEQEEGGEASARHVNKKVAQPATKPDISEPGTAGEDPDRTESEDSDDSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 12 chains have been computed
$ 
$ memory statistics:
$ 20128 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 5032 bytes was the average size of a spliced alignment
$ 9600 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2400 bytes was the average size of a predicted gene location
$ 6 megabytes was the average size of the backtrace matrix
$ 12 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:27:25
-->
