<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:39:07"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340729" ref_strand="+" ref_description="SGN-U340729        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: Na+/H+(evalue: 2e-05, score=52.8)">
      <seq>tgatgaaagatcagtcatgaatactttctcaagtcaagaagtaatagaaacttctcatcattccatcaacttcctgttaagtggttgcttgagagatcaaagtaccgaacaacttattgagtgcccagcagtattaccatgttccattttaagtgaaagcatcccgtacagcagcgccaatggaacggctgagagttttggatcatgttcttattcgaagtacaaagttgtgaaaccagcaaggatagttcgaatcgacatttcagcagtatgagagttggccatgcaaaattttagagagaagtaaaaattggtaagccaaggagataacacaatgtctaactttgaattgcatggattangttggtcatagctttttcatctttcaagagcgtacttgctgtcgttctatgacttcacttttccatcatngaaaagctgtaaaagtacttggcttcatttttctctttgtcggggctaagattgtctngccattctatttctgacatcagtgcaatttacactgcttgataaattatgtaaaaagtctgccacttgncactataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="25605" stop="27214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25905" g_stop="26092" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26093" i_stop="26533" i_length="441">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26534" g_stop="26919" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="574" r_length="386" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-U340729" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25905" e_stop="26092"/>
          <exon e_start="26534" e_stop="26919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAAAGATCAGTCATGAATACTTTCTCAAGTCAAGAAGTAATAGAAACTTCTCATCATTCCATCAACTTCCTGTTAAGTGGTTGCTTGAGAGATCAAAGTACCGAACAACTTATTGAGTGCCCAGCAGTATTACCATGTTCCATTTTAAGTGAAAGCATCCCGTACAGCAGCGCCAATGGAACGGGTAGGTTTCCTCATTATAATGTCTCCTCATCTGAACTGTTGATACCAATGTTTAATTCCTTGTTAGTTTGATCAGTAACACTCAGCAGAAAAAGTGATTTTTCTTCATCTTCTTTGTTGTGACTGTCACGTCGTCAAATCCTCATTAGCCTGCACGCCTTCTTCTTGCTGTTTATAAACTTTGTTGTCATAAGGTTCTACTCGAGTAGGGTTGTTTTTGCATTGTCTGGATGCTCATGAATATATGTTTCTTAAAGAAAAAAAAAAGGAAAGAAAATGGTTTTAGAACTTACCTGACTGCTAGTTGTCTCCCACTTTTAAGTTGACTTCTTTCTTGCATTAAGCAATACTTAGAACCTAAGGGAAGTAACTATCAAGGGTGTCTTCCTTGAAGTATTCCTGTAGTATGGTTTTCTAACTTAGATGCTTGGTGCTTTTGTAGCTGAGAGTTTTGGATCATGTTCTTATTCGAAGTACAAAGTTGTGAAACCAGCAAGGATAGTTCGAATCGACATTTCAGCAGTATGAGAGTTGGCCATGCAAAATTTTAGAAAGAAGTAAAAATTGGTAAGCCAAGGAGATAACACAATGTCTAACTTTGAATTGCATGGATTAGGTTGGTCATAGCTTTTTCATCTTTCAAGAGCGTACTTGCTGTCGTTCTATGACTTCACTTTTCCATCATGAAAAAGCTGTAAAGTTACTTGGCTTCATTTTTTTCTTTGTCGGGGCTAAGATTGTCTGCCCATTCTATTTCTGACATCAGTGCAATTTACACTGCTTGATAATTTATGTAAAAAGTCTGCCACTTGCAACTATAATATTTAC</genome_strand>
        <mrna_strand>TGATGAAAGATCAGTCATGAATACTTTCTCAAGTCAAGAAGTAATAGAAACTTCTCATCATTCCATCAACTTCCTGTTAAGTGGTTGCTTGAGAGATCAAAGTACCGAACAACTTATTGAGTGCCCAGCAGTATTACCATGTTCCATTTTAAGTGAAAGCATCCCGTACAGCAGCGCCAATGGAACGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAGTTTTGGATCATGTTCTTATTCGAAGTACAAAGTTGTGAAACCAGCAAGGATAGTTCGAATCGACATTTCAGCAGTATGAGAGTTGGCCATGCAAAATTTTAGAGAGAAGTAAAAATTGGTAAGCCAAGGAGATAACACAATGTCTAACTTTGAATTGCATGGATTANGTTGGTCATAGCTTTTTCATCTTTCAAGAGCGTACTTGCTGTCGTTCTATGACTTCACTTTTCCATCATNGAAAAGCTGTAAAAGTACTTGGCTTCATTTTTCTCTTTGTCGGGGCTAAGATTGTCTNGCCATTCTATTTCTGACATCAGTGCAATTTACACTGCTTGATAAATTATGTAAAAAGTCTGCCACTTGNCACTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316519" ref_strand="+" ref_description="SGN-U316519        Tomato 200607 #1 [26 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin, putative, identical to SP:P30188 Calmodulin-like protein {Arabidopsis thaliana} | chr2:17268806-17269962 REVERSE | Aliases: F13H10.4, F13H10_4(evalue: 3e-31, score=132) genbank/nr: Calcium-binding(evalue: 6e-37, score=157)">
      <seq>cggccgaattgatactcttcttaatctttttctctctctaagaagcttcctcgaagcttagtaatggagtcctacttaaacctcctccatttcttcttcctttcaacctccttcatcaattcctattccttctccaaattctcaaccatgaagttccccaaaaacttcttcaagtccaaaaaatccagatccctttcccgatccgatgatccatcttactcatcttcctcctcctcctccaacaaaggcggtagcgtcggaggaatttctactcctacgagcgtgttacctactttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtgtttagaatgatcggcgatgaacggtgcacgttagaggaatgtaagcgtatgataacaagtgtagataaaaatggagatggattcgtctgcttcgacgatttctgtcttatgatggaacagcagagataaaagaaaaaaaatagaaattgtcttaatttattttatttcttgtgttagttgggaaaaagggttgtgagattaattaggacccttgatttaggtcaatctaatggctaggattgatctatatttggaagaaatatatataaaatgagaacaacttcctcccttttaagtttgaggttttaggtattttatttttcattatatccatatatatataaataaagtggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43767" stop="45406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44063" g_stop="45026" g_length="964"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="964" r_length="964" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1018" polyA_stop="1057"/>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-U316519" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>964</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44063" e_stop="45026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCCAATAAATACTCTTCTTAATCTTTTTCTCTCTCTAAGAAGCTTCCTCGAAGCTTAGTAATGGAGTCCTACTTAAACCTCCTCCATTTCTTCTTCCTTTCAACCTCCTTCATCAATTCCTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGGAAGAAATATATATAAAATGAGAACAACTTCCTCCCTTTTAAGTTTGA</genome_strand>
        <mrna_strand>CGGCCGAATTGATACTCTTCTTAATCTTTTTCTCTCTCTAAGAAGCTTCCTCGAAGCTTAGTAATGGAGTCCTACTTAAACCTCCTCCATTTCTTCTTCCTTTCAACCTCCTTCATCAATTCCTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGGAAGAAATATATATAAAATGAGAACAACTTCCTCCCTTTTAAGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335715" ref_strand="+" ref_description="SGN-U335715        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin, putative, identical to SP:P30188 Calmodulin-like protein {Arabidopsis thaliana} | chr2:17268806-17269962 REVERSE | Aliases: F13H10.4, F13H10_4(evalue: 3e-27, score=119) genbank/nr: Calcium-binding(evalue: 2e-32, score=142)">
      <seq>aattcctattccttctccaaattctcaaccatgaagttccccgcaaacttcttcaagtccaaaaaatccacatccctttcccgatccgatgatccatcttactcatcttcctcctcctcctccagcgaaggcggtagcgtcggaggaatttctactcctacgagcgtgttacctactttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggcaagattacgaaggacaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgacaacggagatggatgtattagtttaaagaattttgaaactattacctcggcgtttgagtccacgccgacgtctgcagcgggagatgcaggtgagatgagagatgcgtttgatttcttctatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtggttataatgatcggcgatgaacggtgcacattagatgaatgtgagcgtatgataacaagtgtagatataaatggagatggattcgtctgcttcaacgatttctgtcttatgatggaactgcagagataccagatgatatactagaagttgtcttaatctatttaatttcttgtgttacttgagaaaaagggttgagagattaattaggacccctgagataggtcaatctaatggcgacgattgatctatatttggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43880" stop="45282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44180" g_stop="44982" g_length="803"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="804" r_length="804" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-U335715" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44180" e_stop="44982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGA-AAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGGAAG</genome_strand>
        <mrna_strand>AATTCCTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCGCAAACTTCTTCAAGTCCAAAAAATCCACATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAGCGAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGCAAGATTACGAAGGACAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGACAACGGAGATGGATGTATTAGTTTAAAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCCACGCCGACGTCTGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCTATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGGTTATAATGATCGGCGATGAACGGTGCACATTAGATGAATGTGAGCGTATGATAACAAGTGTAGATATAAATGGAGATGGATTCGTCTGCTTCAACGATTTCTGTCTTATGATGGAACTGCAGAGATACCAGATGATATACTAGAAGTTGTCTTAATCTATTTAATTTCTTGTGTTACTTGAGAAAAAGGGTTGAGAGATTAATTAGGACCCCTGAGATAGGTCAATCTAATGGCGACGATTGATCTATATTTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330735" ref_strand="+" ref_description="SGN-U330735        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ttttatggagtatgagtgtggctttccagtaaaagaattccattctcacaatatcaaatttgggagcggttaataaaaaaccaggtgagggttacacaaaggcagaacagatggatggttgatggttgtccaggaagtatacaagatcacattttataaatttccaacattgcacagtttgtcttgactacaattggtaggagcgtgctactaacattgttccttactcaaaccttgaggtcaaggacgggagtattgttatgaacccgcctgccgatacttgtcacacaactagtttttgggccgaggaggagcaacaaaactggaaggcctttgcaaaggcgaatttgggacccatgcccatttaacaactagctatggggagaagcaacaaaactggaaggcctttgcaaaggcgaatttgggacccatgcccatttaagaactatttaaaaggatgacggatgagaaggagcgctttatgcaaattgttgacaaaatatctagtcctttcatccctttctttgagttctatttttaatccatttcttcttagtgtgttattaaattgctttgtaatttcaattatgagttcataaatagatttatcgattgtttgaatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="49476" stop="48250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49176" g_stop="48551" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="642"/>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-U330735" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49176" e_stop="48551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATGGAGTATGAGTGTGGCTTTCCAGTAAAAGAATTCCATTCTCACAATATCAAATCTGGGAGCGGTTAATAAAAAACCAGGTGAGGGCTACACAAAGGCAGAACAGATGGATGGTTGATGGTTGTCCAGGAAGTATACAAGATCACATTTTATAAATTTCCAACATTGCACAGTTTGTCTTGACTACAATTGGTAGGAGCGTGCTACTAACATTGTTCCTTACTCAAACCTTGAGGTCAAGGACGGGAGTATTGTTATGAACCCGCCTGCCGATACTTGTCACACAACTAGTTTTTGGGCCGAGGAGGAGCAACAAAACTGGAAGGCCTTTGCAAAGGCGAATTTGGGACCCATGCCCATTTAACAACTAGCTATGGGGAGAAGCAACAAAACTGGAAGGCCTTTGCAAAGGCGAATTTGGGACCCATGCCCATTTAAGAACTATCTAAAAGGATGACGGATGAGAAGGAGCGCTTTATGCAAATTGTTGACAAAATATCTAGTCCTTTCATCCCTTTCTTTGAGTTCTATTTCTAATCCATTTCTTCTTAGTGTGTTATTAAATTGCTTTGTAATTTCAATTATGAGTTCATAAATAGATTTATCGATTGTTTGAATTTCA</genome_strand>
        <mrna_strand>TTTTATGGAGTATGAGTGTGGCTTTCCAGTAAAAGAATTCCATTCTCACAATATCAAATTTGGGAGCGGTTAATAAAAAACCAGGTGAGGGTTACACAAAGGCAGAACAGATGGATGGTTGATGGTTGTCCAGGAAGTATACAAGATCACATTTTATAAATTTCCAACATTGCACAGTTTGTCTTGACTACAATTGGTAGGAGCGTGCTACTAACATTGTTCCTTACTCAAACCTTGAGGTCAAGGACGGGAGTATTGTTATGAACCCGCCTGCCGATACTTGTCACACAACTAGTTTTTGGGCCGAGGAGGAGCAACAAAACTGGAAGGCCTTTGCAAAGGCGAATTTGGGACCCATGCCCATTTAACAACTAGCTATGGGGAGAAGCAACAAAACTGGAAGGCCTTTGCAAAGGCGAATTTGGGACCCATGCCCATTTAAGAACTATTTAAAAGGATGACGGATGAGAAGGAGCGCTTTATGCAAATTGTTGACAAAATATCTAGTCCTTTCATCCCTTTCTTTGAGTTCTATTTTTAATCCATTTCTTCTTAGTGTGTTATTAAATTGCTTTGTAATTTCAATTATGAGTTCATAAATAGATTTATCGATTGTTTGAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327850" ref_strand="+" ref_description="SGN-U327850        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | pattern formation protein (EMB30) (GNOM), identical to SP:Q42510; contains Pfam profile PF01369: Sec7 domain | chr1:4788556-4794651 FORWARD | Aliases: F16A14.20(evalue: 5e-05, score=44.7)">
      <seq>ttggatcataataagttaattatgtcaaaaacttggatcataataagttaattatgtcaactttgtggtattcttgcatttgggttggtaaaggacaagagcaatttcttcctggtatcttgttgcctaagtcgagagagtttggtagcacggtgaaattactggggttgcttggggcatttgttgcacgatattcagagcagtctccctatattcttgtcaaaaaagatgatgtgctcttgttcactgtatttggtatagttcatatatcgaagataactttgcttatctaggctttggtcctggtccttattttgcttatgatatatttgctgagttacttggtaagacagtggatgtatttcaccagcagttctatcttgatgaagaacttgcaccgcaaaaaactgaccaacagattgcctcactttatcacctaactactacaatgaatcaacattgttacattgatagcatctttgtcgagagtaatttcttgcaagcaaggttcatatttcagcttgtttggatcctactgttgacggagcacaagcttaggccaagcataactactgattcaagtttgggctcaattatgtgttatatagtgcaacttattcatggactgagctacaaagatctattgagaattatcttgattacatttttatggagtatgagtgtggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="50141" stop="48853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49841" g_stop="49153" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-U327850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49841" e_stop="49153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATCATAATAAGTTAATTATGTCAAAAACTTGGATCATAATAAGTTAATTATGTCAACTTTGTGGTATTCTTGCATTTGGGTTGGTAAAGGACAAGAGCAATTTCTTCCTGGTATCTTGTTGCCTAAGTCGAGAGAGTTTGGTAGCACGGTGAAATTACTGGGGTTGCTTGGGGCATTTGTTGCACGATATTCAGAGCAGTCTCCCTATATTCTTGTCAAAAAAGATGATGTGCTCTTGTTCACTGTATTTGGTATAGTTCATATATCGAAGATAACTTTGCTTATCTAGGCTTTGGTCCTGGTCCTTATTTTGCTTATGATATATTTGCTGAGTTACTTGGTAAGACAGTGGATGTATTTCACCAGCAGTTCTATCTTGATGAAGAACTTGCACCGCAAAAAACTGACCAACAGATTGCCTCACTTTATCACCTAACTACTACAATGAATCAACATTGTTACATTGATAGCATCTTTGTCGAGAGTAATTTCTTGCAAGCAAGGTTCATATTTCAGCTTGTTTGGATCCTACTGTTGACGGAGCACAAGCTTAGGCCAAGCATAACTACTGATTCAAGTTTGGGCTCAATTATGTGTTATATAGTGCAACTTATTCATGGACTGAGCTACAAAGATCTATTGAGAATTATCTTGATTACATTTTTATGGAGTATGAGTGTGGCTT</genome_strand>
        <mrna_strand>TTGGATCATAATAAGTTAATTATGTCAAAAACTTGGATCATAATAAGTTAATTATGTCAACTTTGTGGTATTCTTGCATTTGGGTTGGTAAAGGACAAGAGCAATTTCTTCCTGGTATCTTGTTGCCTAAGTCGAGAGAGTTTGGTAGCACGGTGAAATTACTGGGGTTGCTTGGGGCATTTGTTGCACGATATTCAGAGCAGTCTCCCTATATTCTTGTCAAAAAAGATGATGTGCTCTTGTTCACTGTATTTGGTATAGTTCATATATCGAAGATAACTTTGCTTATCTAGGCTTTGGTCCTGGTCCTTATTTTGCTTATGATATATTTGCTGAGTTACTTGGTAAGACAGTGGATGTATTTCACCAGCAGTTCTATCTTGATGAAGAACTTGCACCGCAAAAAACTGACCAACAGATTGCCTCACTTTATCACCTAACTACTACAATGAATCAACATTGTTACATTGATAGCATCTTTGTCGAGAGTAATTTCTTGCAAGCAAGGTTCATATTTCAGCTTGTTTGGATCCTACTGTTGACGGAGCACAAGCTTAGGCCAAGCATAACTACTGATTCAAGTTTGGGCTCAATTATGTGTTATATAGTGCAACTTATTCATGGACTGAGCTACAAAGATCTATTGAGAATTATCTTGATTACATTTTTATGGAGTATGAGTGTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323594" ref_strand="+" ref_description="SGN-U323594        Tomato 200607 #1 [6 ESTs aligned]">
      <seq>aacactatccctaacttgccctcgcctcagtcgtggaatgcgcaccaggtgtccaatgaaaagtcaaataagacttctgatattgttgtagatgttgagaatgtaatagtgctaatcaaaagtggcagtgctgaaatgttggttactcaagcaaaagagaagatttttcattcgatttcggatgaaaccaaagaggaggtggagttccatgtttcacaacacattagtgaaccacttatatacaacaacaatgaggcacacaagatgtttgtgtgaaaaatgaagataatttttaattttttggaggtacaaaaaatattttagatatatagtagaactttctagaatttggtagaataaatatctttaatatttatagttaagaaaaatctattgctctacataattagatatttatagtaaagtatagaataatttagattcttgttaaataattagaagataaggttatctaaatttttcttgtagatctttctagaataatttttagaagtatctctatactagtataaataggggtggtcatagtcatttgtaatcaacccaaaccaaatagtctatcaaaattctcttattcaaaatatttcttcacctttctagtttcctctttttagttgaatcttccgatcttatttaacgatcttgagctaggagaagatttactgattatacttttcttctgctattctctacagtttgatggatattctttaggatgtaaggatgttattctagaatcacacaaggtgcttatgattaccacagatactattgaggaaaatgactatgctattgatgttgataatgaagacaggactgaggaagaagaagaagaaaagcttttaatcattgaaaataaaataggacaatcggcttcggcatttgtgggaatacttccattatggattgattctacattttctagtttcggtgactttgccatgttttgtatgctacataaatttgggatagctcgatgtttggaggagttctctgaaatgctttcaacttgtagatatgaccatcttactaacagaggtataaatgatcactttagtagacttggtcgtgcttcacttatcttaactttccaattgtttccacctgatcaattcggattagcgtttccatttgatcctggctctcgctcacttacgatgttccttagagttatgagaaactatgtattttgtgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="51370" stop="49553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51070" g_stop="49853" g_length="1218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1218" r_length="1218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-U323594" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1218</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51070" e_stop="49853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTATCCCTAACTTGCCCTCGCCTCAGTCGTGGAATGCGCACCAGGTGTCCAATGAAAAGTCAAATAAGACTTCTGATATTGTTGTAGATGTTGAGAATGTAATAGTGCTAATCAAAAGTGGCAGTGCTGAAATGTTGGTTACTCAAGCAAAAGAGAAGATTTTTCATTCGATTTCGGATGAAACCAAAGAGGAGGTGGAGTTCCATGTTTCACAACACATTAGTGAACCACTTATATACAACAACAATGAGGCACACAAGATGTTTGTGTGAAAAATGAAGATAATTTTTAATTTTTTGGAGGTACAAAAAATATTTTAGATATATAGTAGAACTTTCTAGAATTTGGTAGAATAAATATCTTTAATATTTATAGTTAAGAAAAATCTATTGCTCTACATAATTAGATATTTATAGTAAAGTATAGAATAATTTAGATTCTTGTTAAATAATTAGAAGATAAGGTTATCTAAATTTTTCTTGTAGATCTTTCTAGAATAATTTTTAGAAGTATCTCTATACTAGTATAAATAGGGGTGGTCATAGTCATTTGTAATCAACCCAAACCAAATAGTCTATCAAAATTCTCTTATTCAAAATATTTCTTCACCTTTCTAGTTTCCTCTTTTTAGTTGAATCTTCCGATCTTATTTAACGATCTTGAGCTAGGAGAAGATTTACTGATTATACTTTTCTTCTGCTATTCTCTACAGTTTGATGGATATTCTTTAGGATGTAAGGATGTTATTCTAGAATCACACAAGGTGCTTATGATTACCACAGATACTATTGAGGAAAATGACTATGCTATTGATGTTGATAATGAAGACAGGACTGAGGAAGAAGAAGAAGAAAAGCTTTTAATCATTGAAAATAAAATAGGACAATCGGCTTCGGCATTTGTGGGAATACTTCCATTATGGATTGATTCTACATTTTCTAGTTTCGGTGACTTTGCCATGTTTTGTATGCTACATAAATTTGGGATAGCTCGATGTTTGGAGGAGTTCTCTGAAATGCTTTCAACTTGTAGATATGACCATCTTACTAACAGAGGTATAAATGATCACTTTAGTAGACTTGGTCGTGCTTCACTTATCTTAACTTTCCAATTGTTTCCACCTGATCAATTCGGATTAGCGTTTCCATTTGATCCTGGCTCTCGCTCACTTACGATGTTCCTTAGAGTTATGAGAAACTATGTATTTTGTGTCG</genome_strand>
        <mrna_strand>AACACTATCCCTAACTTGCCCTCGCCTCAGTCGTGGAATGCGCACCAGGTGTCCAATGAAAAGTCAAATAAGACTTCTGATATTGTTGTAGATGTTGAGAATGTAATAGTGCTAATCAAAAGTGGCAGTGCTGAAATGTTGGTTACTCAAGCAAAAGAGAAGATTTTTCATTCGATTTCGGATGAAACCAAAGAGGAGGTGGAGTTCCATGTTTCACAACACATTAGTGAACCACTTATATACAACAACAATGAGGCACACAAGATGTTTGTGTGAAAAATGAAGATAATTTTTAATTTTTTGGAGGTACAAAAAATATTTTAGATATATAGTAGAACTTTCTAGAATTTGGTAGAATAAATATCTTTAATATTTATAGTTAAGAAAAATCTATTGCTCTACATAATTAGATATTTATAGTAAAGTATAGAATAATTTAGATTCTTGTTAAATAATTAGAAGATAAGGTTATCTAAATTTTTCTTGTAGATCTTTCTAGAATAATTTTTAGAAGTATCTCTATACTAGTATAAATAGGGGTGGTCATAGTCATTTGTAATCAACCCAAACCAAATAGTCTATCAAAATTCTCTTATTCAAAATATTTCTTCACCTTTCTAGTTTCCTCTTTTTAGTTGAATCTTCCGATCTTATTTAACGATCTTGAGCTAGGAGAAGATTTACTGATTATACTTTTCTTCTGCTATTCTCTACAGTTTGATGGATATTCTTTAGGATGTAAGGATGTTATTCTAGAATCACACAAGGTGCTTATGATTACCACAGATACTATTGAGGAAAATGACTATGCTATTGATGTTGATAATGAAGACAGGACTGAGGAAGAAGAAGAAGAAAAGCTTTTAATCATTGAAAATAAAATAGGACAATCGGCTTCGGCATTTGTGGGAATACTTCCATTATGGATTGATTCTACATTTTCTAGTTTCGGTGACTTTGCCATGTTTTGTATGCTACATAAATTTGGGATAGCTCGATGTTTGGAGGAGTTCTCTGAAATGCTTTCAACTTGTAGATATGACCATCTTACTAACAGAGGTATAAATGATCACTTTAGTAGACTTGGTCGTGCTTCACTTATCTTAACTTTCCAATTGTTTCCACCTGATCAATTCGGATTAGCGTTTCCATTTGATCCTGGCTCTCGCTCACTTACGATGTTCCTTAGAGTTATGAGAAACTATGTATTTTGTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315285" ref_strand="+" ref_description="SGN-U315285        Tomato 200607 #1 [6 ESTs aligned]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtcctcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtctcgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagaatactcatagtttagtcatttgatcgtagatgttcttgtgatgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="61060" stop="121211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61359" g_stop="61917" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61918" i_stop="62266" i_length="349">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62267" g_stop="63372" g_length="1106"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="1660" r_length="1102" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-U315285" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>1665</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61359" e_stop="61917"/>
          <exon e_start="62267" e_stop="63372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCT-TTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATCAAGCATGATGAAGTGATTGAATCTCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAAGGAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTATGGGATCGGGTGTGACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGGACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGATCGGGTGTCACGAACCGATACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAAATTTAGGGGATCGGGTGTCATGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGAGAACGGGTGTCACAGACCGACACGTAGATTTAGGGGATCGGGTGTCACGAATCGACACGTAGATTTAGGGGATCGGGTGTCACGAACTGACACATAGATTTAGGGGATCGGGGTTCACGAACCGACACATAGATTTAGGGGATCGGGTGTCACGAACCGACACTTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGAAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATAAATCTTGAAAGATGTTTATATACTCAATCTAATGAACATGATTACCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTAAGTACCTGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTTTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGTCAGTCTTCGTCACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAG-TTAGTCGTTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTTTTATTTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTGGGTCGTGACAAACTTGATATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTATGGAACGGTAGGGGGACGCCTTTACTTTTATTTGAGAGGCTATAAGACTTTAGGAAAATTTCATTCTTTCTTTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCGGCGGGACAGGGTGCGTCTGAGCAAGCTACTGGGGCTGTTG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATAT-AAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAG-ATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGG.............................................................................................................................................................................................................................................................................................................................................................AGTGTCACGTTCCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTA-TGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCCTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTCGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCATAGTTTAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTC-TGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAA-TTC---CATTCTTTC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCAGCACCGGCGGGACAGGGTGCGACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="64111" stop="63079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63811" g_stop="63379" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63811" e_stop="63379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="65189" stop="64031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64889" g_stop="64331" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64889" e_stop="64331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGATAGCATCAGATGCCTCCGCTTCAGATCGCCCAGGGAAAGTGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCTCAACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTTTCCCCACATCCATAACACTATCTGGAGTCAAGCATAGGTCTCTTAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGACCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="65396" stop="64470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65096" g_stop="64766" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65096" e_stop="64766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAGTCCAAAATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATCTCCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="65868" stop="64610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65568" g_stop="64910" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65568" e_stop="64910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTATTCAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATTGAAATGGGGCGAGTACCCGATTCAAGGTCAATACAAAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACCACCGAAACCGACTTAATCGAAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAGGGAGATGATACGCACCGGATTGGAAGTGTAGTCGCCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAGTCCAAAATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATCTCCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="67869" stop="67092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67569" g_stop="67393" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67569" e_stop="67393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTACTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGACACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335079" ref_strand="+" ref_description="SGN-U335079        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="70348" stop="69412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70048" g_stop="69712" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-U335079" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70048" e_stop="69712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTTAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTTGATACCATACTCATTTGGTAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTTCGCTCCCTCATATTCATTAATCCTCTTGTGTTGGTACGTGACACTCCGATCCCCTAAATCTACGTGTC-GGTTCGTGACACCCTATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340499" ref_strand="-" ref_description="SGN-U340499        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tctccttctttttcgtatttcggaggttcttaaaggttcaagttgccttatcaaagttcaagttgccttatcaaaccttccacttttaaaactgacggatagatctcaagaccaagattcgaagcagagctggagtcagaatttggaccaaagagctcaatttttttttctttctttttttcttttggcattgtatttgggcataagcccttgttgtctttatctttccctttattatttattgtattacctgactagaatttaggacacgtaccataatcaaaataggtcaacaaaacccaaaacaaatgggtccaaaaattcggtcaaggcggaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="77571" stop="76631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77271" g_stop="76941" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="336" polyA_stop="363"/>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-U340499" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340499" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77271" e_stop="76941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTTCTTTTTCGTATTTCGGAGGTTCTTAAAGGTTCAAGTTGCCTTATCAAAGTTCAAGTTGCCTTATCAAACCTTCCACTTTTAAAACTGACGGATAGATCTCAAGACCAAGATTCGAAGCAGAGCTGGAGTCAGAATTTGGACCAAAGAGCTCAATTTTTTTTTCTTTCTTTTTTTCTTTTGGCATTGTATTTGGGCATAAGCCCTTGTTGTCTTTATCTTTCCCTTTATTATTTATTGTATTACTTGACTAGAATTTAGGACACGTACAATAATCAAAATAGGTCAACAAAACCCAAAACAAATGGGTCCAAAAATTCGGTCAAG</genome_strand>
        <mrna_strand>TCTCCTTCTTTTTCGTATTTCGGAGGTTCTTAAAGGTTCAAGTTGCCTTATCAAAGTTCAAGTTGCCTTATCAAACCTTCCACTTTTAAAACTGACGGATAGATCTCAAGACCAAGATTCGAAGCAGAGCTGGAGTCAGAATTTGGACCAAAGAGCTCAATTTTTTTTTCTTTCTTTTTTTCTTTTGGCATTGTATTTGGGCATAAGCCCTTGTTGTCTTTATCTTTCCCTTTATTATTTATTGTATTACCTGACTAGAATTTAGGACACGTACCATAATCAAAATAGGTCAACAAAACCCAAAACAAATGGGTCCAAAAATTCGGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341053" ref_strand="+" ref_description="SGN-U341053        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824956|gb|AAT38730.1| putative reverse transcriptase [Solanum demissum] (evalue: 1e-35, score=88.6)">
      <seq>acttcgaaggtgtttctccctgtatcagacttcctagtactccaaactttgttattccgggagattttcactaatttttaagcgatctcagcataagggcattctccataagatccaccttctataatgtccaacacttctttgttactatcatcctgtccctgatagaactatttcttccgtgactcatcatctatacagtgatttggaacacttctcaagaatgaggtgatctatcccaagaactactaactgactctactggtagtgccacaaaattatttactctgtctttgtggtttagtttcttcgagattggatagtagagtgccaagaaaacatctcttaattggttccaagtgaagattgagttgcatggaagctcagtgaaccatataggagcctctcccttcagtgagagaggaaacactgtgagccctattacatctagatccatgtcaggcctccccacactacatttacacactgcccttaccttagctatttgggcatgtggatcctcaggcggtagccctgaaaacaaacctctagcagtgagcatttgcatcaggctactagttaccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="115444" stop="114254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115144" g_stop="114555" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-U341053" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115144" e_stop="114555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTAATCCAAGCTTTGTTATTCCGGGAGATTTTCTCTAGTTTTTCAGCGATCTCAGCATAAGGGCATTCTCTATAAGATCCACCTGCTATAGTGTCCAACACCGCTTTGTTGTTATCACCCTGTCCCCGATAGAAGTATTCCTTCAGTGAATAATCATCTATATGGTGATTTTGAACACTTCTATAGAATGAGGTGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTCACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACTGGATAGTAGCGTGCTAAGAAAACATCTCTTAATTTGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAACCATATAGCAGCCTCTCCAGTCAGTGAGAGAGGAAACACTCTGAGACCTATTACATCTAGATCCAAATCACGCCTCCCCACACAACTTTTACAAACTGCCCTTACCTTAGCTATATAGGCATGTGGATCCTCAGAAGGTAGCCCTGAGAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAA</genome_strand>
        <mrna_strand>ACTTCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAACTTTGTTATTCCGGGAGATTTTCACTAATTTTTAAGCGATCTCAGCATAAGGGCATTCTCCATAAGATCCACCTTCTATAATGTCCAACACTTCTTTGTTACTATCATCCTGTCCCTGATAGAACTATTTCTTCCGTGACTCATCATCTATACAGTGATTTGGAACACTTCTCAAGAATGAGGTG-ATCTATCCCAAGAACTACTAACTGACTCTACTGGTAGTGCCACAAAATTATTTACTCTGTCTTTGTGGTTTAGTTTCTTCGAGATTGGATAGTAGAGTGCCAAGAAAACATCTCTTAATTGGTTCCAAGTGAAGATTGAGTTGCATGGAAGCTCAGTGAACCATATAGGAGCCTCTCCCTTCAGTGAGAGAGGAAACACTGTGAGCCCTATTACATCTAGATCCATGTCAGGCCTCCCCACACTACATTTACACACTGCCCTTACCTTAGCTATTTGGGCATGTGGATCCTCAGGCGGTAGCCCTGAAAACAAACCTCTAGCAGTGAGCATTTGCATCAGGCTACTAGTTACCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="120327" stop="121211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120626" g_stop="120911" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120626" e_stop="120911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGTTCGTTGGTCTAATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACATCAACAGCGGCCAGACAAGAAACCACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="120684" stop="121837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120984" g_stop="121537" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120984" e_stop="121537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATGTGATACTAGGGTAGTGACTCCTCCACCGACTAAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTTCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCGTGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCACGAGCTACTACACAAAATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="122724" stop="120688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122424" g_stop="120988" g_length="1437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122424" e_stop="120988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAGGAAAACGTGGATCCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCACTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTTACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGAGACAGTTTTTCCTAATATGTCCAATCTCCCCACATCCATAACACTCTCTGGATTCAAGCATAAGCCTCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGGGAAGACTGAATTGGTCGGACTGAGTAACTTCCCAAACCTTGTCCTCTAGTGTAAGAACCATTAAACTAACCCCCCTTTCGAAATCTCTTTGATGTCGATGCTGTGGTGAAGTAGTCTAGCTTCACTCCTTCCACATCTACCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCGCAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAACATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATTTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCACGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGAAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCAT-CCTCCCCTTCTCTTATTACCTCCTTAGTCGGTGGAGGAGTCACTACCCTAGTATCACATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="63772" stop="123319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121611" g_stop="121797" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121798" i_stop="122541" i_length="744">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122542" g_stop="123055" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121611" e_stop="121797"/>
          <exon e_start="122542" e_stop="123055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTAATGTTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGCGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGGTAGATGTGGAAGGAGTGAAGCTAGACTACTTCACCACAGCATCGACATCAAAGAGATTTCGAAAGGGGGGTTAGTTTAATGGTTCTTACACTAGAGGACAAGGTTTGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCCCTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGAGGCTTATGCTTGAATCCAGAGAGTGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAACTGTCTCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTAACCAAAACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGTGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGACTTCTGTATTGTTTGATCCTGGATCCACGTTTTCCTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTGATTCTAGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCATCTCCTTTCTTTGTGCTAAGAAAATTATTAGTAAAGGGTGTTTAGCTTTCTTAGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGGACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="123338" stop="121981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123038" g_stop="122281" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123038" e_stop="122281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTCCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCTAAGAAAGCTAAACACCCTTTACTAATAATTTTCTTAGCACAAAGAAAGGAGATGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAGGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="123927" stop="122615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123627" g_stop="122915" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123627" e_stop="122915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTTGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACTAGTATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCTTTGCCCATATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTCCAATAACTC-TTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTG-CTCACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="25905" PGL_stop="26919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25905" e_stop="26092"/>
            <exon e_start="26534" e_stop="26919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.722" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25905" e_stop="26092" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.722">
            <gDNA_intron_boundary i_start="26093" i_stop="26533" i_length="441"/>
          </intron>
          <exon e_serial="2" e_score="0.956">
            <gDNA_exon_boundary e_start="26534" e_stop="26919" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25905" stop="26092"/>
              <exon start="26534" stop="26919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGAAAGATCAGTCATGAATACTTTCTCAAGTCAAGAAGTAATAGAAACTTCTCATCATTCCATCAACTTCCTGTTAAGTGGTTGCTTGAGAGATCAAAGTACCGAACAACTTATTGAGTGCCCAGCAGTATTACCATGTTCCATTTTAAGTGAAAGCATCCCGTACAGCAGCGCCAATGGAACGG : CTGAGAGTTTTGGATCATGTTCTTATTCGAAGTACAAAGTTGTGAAACCAGCAAGGATAGTTCGAATCGACATTTCAGCAGTATGAGAGTTGGCCATGCAAAATTTTAGAAAGAAGTAAAAATTGGTAAGCCAAGGAGATAACACAATGTCTAACTTTGAATTGCATGGATTAGGTTGGTCATAGCTTTTTCATCTTTCAAGAGCGTACTTGCTGTCGTTCTATGACTTCACTTTTCCATCATGAAAAAGCTGTAAAGTTACTTGGCTTCATTTTTTTCTTTGTCGGGGCTAAGATTGTCTGCCCATTCTATTTCTGACATCAGTGCAATTTACACTGCTTGATAATTTATGTAAAAAGTCTGCCACTTGCAACTATAATATTTAC</gDNA_template>
            <first_frame> *  *  K  I  S  H  E  Y  F  L  K  S  R  S  N  R  N  F  S  S  F  H  Q  L  P  V  K  W  L  L  E  R  S  K  Y  R  T  T  Y  *  V  P  S  S  I  T  M  F  H  F  K  *  K  H  P  V  Q  Q  R  Q  W  N  G :   *  E  F  W  I  M  F  L  F  E  V  Q  S  C  E  T  S  K  D  S  S  N  R  H  F  S  S  M  R  V  G  H  A  K  F  *  K  E  V  K  I  G  K  P  R  R  *  H  N  V  *  L  *  I  A  W  I  R  L  V  I  A  F  S  S  F  K  S  V  L  A  V  V  L  *  L  H  F  S  I  M  K  K  L  *  S  Y  L  A  S  F  F  S  L  S  G  L  R  L  S  A  H  S  I  S  D  I  S  A  I  Y  T  A  *  *  F  M  *  K  V  C  H  L  Q  L  *  Y  L  </first_frame>
            <second_frame>  D  E  R  S  V  M  N  T  F  S  S  Q  E  V  I  E  T  S  H  H  S  I  N  F  L  L  S  G  C  L  R  D  Q  S  T  E  Q  L  I  E  C  P  A  V  L  P  C  S  I  L  S  E  S  I  P  Y  S  S  A  N  G  T   : A  E  S  F  G  S  C  S  Y  S  K  Y  K  V  V  K  P  A  R  I  V  R  I  D  I  S  A  V  *  E  L  A  M  Q  N  F  R  K  K  *  K  L  V  S  Q  G  D  N  T  M  S  N  F  E  L  H  G  L  G  W  S  *  L  F  H  L  S  R  A  Y  L  L  S  F  Y  D  F  T  F  P  S  *  K  S  C  K  V  T  W  L  H  F  F  L  C  R  G  *  D  C  L  P  I  L  F  L  T  S  V  Q  F  T  L  L  D  N  L  C  K  K  S  A  T  C  N  Y  N  I  Y </second_frame>
            <third_frame>   M  K  D  Q  S  *  I  L  S  Q  V  K  K  *  *  K  L  L  I  I  P  S  T  S  C  *  V  V  A  *  E  I  K  V  P  N  N  L  L  S  A  Q  Q  Y  Y  H  V  P  F  *  V  K  A  S  R  T  A  A  P  M  E  R  :  L  R  V  L  D  H  V  L  I  R  S  T  K  L  *  N  Q  Q  G  *  F  E  S  T  F  Q  Q  Y  E  S  W  P  C  K  I  L  E  R  S  K  N  W  *  A  K  E  I  T  Q  C  L  T  L  N  C  M  D  *  V  G  H  S  F  F  I  F  Q  E  R  T  C  C  R  S  M  T  S  L  F  H  H  E  K  A  V  K  L  L  G  F  I  F  F  F  V  G  A  K  I  V  C  P  F  Y  F  *  H  Q  C  N  L  H  C  L  I  I  Y  V  K  S  L  P  L  A  T  I  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25906" stop="26092"/>
                    <exon start="26534" stop="26619"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DERSVMNTFSSQEVIETSHHSINFLLSGCLRDQSTEQLIECPAVLPCSILSESIPYSSANGTAESFGSCSYSKYKVVKPARIVRIDISAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="44063" PGL_stop="45026"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44063" e_stop="45026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="44063" e_stop="45026" e_length="964"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44063" stop="45026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44180" stop="44982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335715" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTCCAATAAATACTCTTCTTAATCTTTTTCTCTCTCTAAGAAGCTTCCTCGAAGCTTAGTAATGGAGTCCTACTTAAACCTCCTCCATTTCTTCTTCCTTTCAACCTCCTTCATCAATTCCTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGGAAGAAATATATATAAAATGAGAACAACTTCCTCCCTTTTAAGTTTGA</gDNA_template>
            <first_frame> P  S  N  K  Y  S  S  *  S  F  S  L  S  K  K  L  P  R  S  L  V  M  E  S  Y  L  N  L  L  H  F  F  F  L  S  T  S  F  I  N  S  Y  S  F  S  K  F  S  T  M  K  F  P  K  N  F  F  K  S  K  K  S  R  S  L  S  R  S  D  D  P  S  Y  S  S  S  S  S  S  S  N  K  G  G  S  V  G  G  I  S  T  P  T  S  V  L  P  T  L  S  N  E  I  S  A  D  E  W  S  D  I  S  T  A  G  V  Y  S  D  L  V  R  A  F  S  V  I  D  N  G  D  G  K  I  K  K  E  K  L  E  A  I  L  S  R  V  G  G  K  S  P  P  S  E  E  E  L  V  L  L  L  D  E  L  D  E  N  G  D  G  C  I  S  L  E  N  F  E  T  I  T  S  A  F  E  S  T  P  T  S  A  A  G  D  A  G  E  M  R  D  A  F  D  F  F  D  E  D  H  D  G  K  I  T  G  E  E  L  F  N  V  F  R  M  I  G  D  E  R  C  T  L  E  E  C  K  R  M  I  T  S  V  D  K  N  G  D  G  F  V  C  F  D  D  F  C  L  M  M  E  Q  Q  R  *  K  K  K  N  R  N  C  L  N  L  F  Y  F  L  C  *  L  G  K  R  V  V  R  L  I  R  T  L  D  L  G  Q  S  N  G  *  D  *  S  I  F  G  R  N  I  Y  K  M  R  T  T  S  S  L  L  S  L  </first_frame>
            <second_frame>  P  P  I  N  T  L  L  N  L  F  L  S  L  R  S  F  L  E  A  *  *  W  S  P  T  *  T  S  S  I  S  S  S  F  Q  P  P  S  S  I  P  I  P  S  P  N  S  Q  P  *  S  S  P  K  T  S  S  S  P  K  N  P  D  P  F  P  D  P  M  I  H  L  T  H  L  P  P  P  P  P  T  K  A  V  A  S  E  E  F  L  L  L  R  A  C  Y  L  L  Y  P  T  R  S  Q  L  M  S  G  P  T  S  L  P  P  E  F  T  P  I  S  F  E  R  F  P  L  S  I  T  E  T  V  R  L  R  R  R  N  S  K  R  F  *  A  E  L  E  V  N  L  H  R  V  K  R  N  L  C  C  C  L  M  N  W  M  R  T  E  M  D  V  L  V  *  R  I  L  K  L  L  P  R  R  L  S  R  H  R  R  R  Q  R  E  M  Q  V  R  *  E  M  R  L  I  S  S  M  R  I  T  T  G  K  S  P  V  R  N  C  L  T  C  L  E  *  S  A  M  N  G  A  R  *  R  N  V  S  V  *  *  Q  V  *  I  K  M  E  M  D  S  S  A  S  T  I  S  V  L  *  W  N  S  R  D  K  R  K  K  I  E  I  V  L  I  Y  F  I  S  C  V  S  W  E  K  G  L  *  D  *  L  G  P  L  I  *  V  N  L  M  A  R  I  D  L  Y  L  E  E  I  Y  I  K  *  E  Q  L  P  P  F  *  V  * </second_frame>
            <third_frame>   L  Q  *  I  L  F  L  I  F  F  S  L  *  E  A  S  S  K  L  S  N  G  V  L  L  K  P  P  P  F  L  L  P  F  N  L  L  H  Q  F  L  F  L  L  Q  I  L  N  H  E  V  P  Q  K  L  L  Q  V  Q  K  I  Q  I  P  F  P  I  R  *  S  I  L  L  I  F  L  L  L  L  Q  Q  R  R  *  R  R  R  N  F  Y  S  Y  E  R  V  T  Y  F  I  Q  R  D  L  S  *  *  V  V  R  H  L  Y  R  R  S  L  L  R  S  R  S  S  V  F  R  Y  R  *  R  R  R  *  D  *  E  G  E  T  R  S  D  F  K  Q  S  W  R  *  I  S  T  E  *  R  G  T  C  V  V  A  *  *  I  G  *  E  R  R  W  M  Y  *  F  R  E  F  *  N  Y  Y  L  G  V  *  V  D  T  D  V  G  S  G  R  C  R  *  D  E  R  C  V  *  F  L  R  *  G  S  R  R  E  N  H  R  *  G  I  V  *  R  V  *  N  D  R  R  *  T  V  H  V  R  G  M  *  A  Y  D  N  K  C  R  *  K  W  R  W  I  R  L  L  R  R  F  L  S  Y  D  G  T  A  E  I  K  E  K  K  *  K  L  S  *  F  I  L  F  L  V  L  V  G  K  K  G  C  E  I  N  *  D  P  *  F  R  S  I  *  W  L  G  L  I  Y  I  W  K  K  Y  I  *  N  E  N  N  F  L  P  F  K  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44087" stop="44854"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFSLSKKLPRSLVMESYLNLLHFFFLSTSFINSYSFSKFSTMKFPKNFFKSKKSRSLSRSDDPSYSSSSSSSNKGGSVGGISTPTSVLPTLSNEISADEWSDISTAGVYSDLVRAFSVIDNGDGKIKKEKLEAILSRVGGKSPPSEEELVLLLDELDENGDGCISLENFETITSAFESTPTSAAGDAGEMRDAFDFFDEDHDGKITGEELFNVFRMIGDERCTLEECKRMITSVDKNGDGFVCFDDFCLMMEQQR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="49841" PGL_stop="48551"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49841" e_stop="48551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49841" e_stop="48551" e_length="1291"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49841" stop="49153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49176" stop="48551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330735" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGATCATAATAAGTTAATTATGTCAAAAACTTGGATCATAATAAGTTAATTATGTCAACTTTGTGGTATTCTTGCATTTGGGTTGGTAAAGGACAAGAGCAATTTCTTCCTGGTATCTTGTTGCCTAAGTCGAGAGAGTTTGGTAGCACGGTGAAATTACTGGGGTTGCTTGGGGCATTTGTTGCACGATATTCAGAGCAGTCTCCCTATATTCTTGTCAAAAAAGATGATGTGCTCTTGTTCACTGTATTTGGTATAGTTCATATATCGAAGATAACTTTGCTTATCTAGGCTTTGGTCCTGGTCCTTATTTTGCTTATGATATATTTGCTGAGTTACTTGGTAAGACAGTGGATGTATTTCACCAGCAGTTCTATCTTGATGAAGAACTTGCACCGCAAAAAACTGACCAACAGATTGCCTCACTTTATCACCTAACTACTACAATGAATCAACATTGTTACATTGATAGCATCTTTGTCGAGAGTAATTTCTTGCAAGCAAGGTTCATATTTCAGCTTGTTTGGATCCTACTGTTGACGGAGCACAAGCTTAGGCCAAGCATAACTACTGATTCAAGTTTGGGCTCAATTATGTGTTATATAGTGCAACTTATTCATGGACTGAGCTACAAAGATCTATTGAGAATTATCTTGATTACATTTTTATGGAGTATGAGTGTGGCTTTCCAGTAAAAGAATTCCATTCTCACAATATCAAATCTGGGAGCGGTTAATAAAAAACCAGGTGAGGGCTACACAAAGGCAGAACAGATGGATGGTTGATGGTTGTCCAGGAAGTATACAAGATCACATTTTATAAATTTCCAACATTGCACAGTTTGTCTTGACTACAATTGGTAGGAGCGTGCTACTAACATTGTTCCTTACTCAAACCTTGAGGTCAAGGACGGGAGTATTGTTATGAACCCGCCTGCCGATACTTGTCACACAACTAGTTTTTGGGCCGAGGAGGAGCAACAAAACTGGAAGGCCTTTGCAAAGGCGAATTTGGGACCCATGCCCATTTAACAACTAGCTATGGGGAGAAGCAACAAAACTGGAAGGCCTTTGCAAAGGCGAATTTGGGACCCATGCCCATTTAAGAACTATCTAAAAGGATGACGGATGAGAAGGAGCGCTTTATGCAAATTGTTGACAAAATATCTAGTCCTTTCATCCCTTTCTTTGAGTTCTATTTCTAATCCATTTCTTCTTAGTGTGTTATTAAATTGCTTTGTAATTTCAATTATGAGTTCATAAATAGATTTATCGATTGTTTGAATTTCA</gDNA_template>
            <first_frame> L  D  H  N  K  L  I  M  S  K  T  W  I  I  I  S  *  L  C  Q  L  C  G  I  L  A  F  G  L  V  K  D  K  S  N  F  F  L  V  S  C  C  L  S  R  E  S  L  V  A  R  *  N  Y  W  G  C  L  G  H  L  L  H  D  I  Q  S  S  L  P  I  F  L  S  K  K  M  M  C  S  C  S  L  Y  L  V  *  F  I  Y  R  R  *  L  C  L  S  R  L  W  S  W  S  L  F  C  L  *  Y  I  C  *  V  T  W  *  D  S  G  C  I  S  P  A  V  L  S  *  *  R  T  C  T  A  K  N  *  P  T  D  C  L  T  L  S  P  N  Y  Y  N  E  S  T  L  L  H  *  *  H  L  C  R  E  *  F  L  A  S  K  V  H  I  S  A  C  L  D  P  T  V  D  G  A  Q  A  *  A  K  H  N  Y  *  F  K  F  G  L  N  Y  V  L  Y  S  A  T  Y  S  W  T  E  L  Q  R  S  I  E  N  Y  L  D  Y  I  F  M  E  Y  E  C  G  F  P  V  K  E  F  H  S  H  N  I  K  S  G  S  G  *  *  K  T  R  *  G  L  H  K  G  R  T  D  G  W  L  M  V  V  Q  E  V  Y  K  I  T  F  Y  K  F  P  T  L  H  S  L  S  *  L  Q  L  V  G  A  C  Y  *  H  C  S  L  L  K  P  *  G  Q  G  R  E  Y  C  Y  E  P  A  C  R  Y  L  S  H  N  *  F  L  G  R  G  G  A  T  K  L  E  G  L  C  K  G  E  F  G  T  H  A  H  L  T  T  S  Y  G  E  K  Q  Q  N  W  K  A  F  A  K  A  N  L  G  P  M  P  I  *  E  L  S  K  R  M  T  D  E  K  E  R  F  M  Q  I  V  D  K  I  S  S  P  F  I  P  F  F  E  F  Y  F  *  S  I  S  S  *  C  V  I  K  L  L  C  N  F  N  Y  E  F  I  N  R  F  I  D  C  L  N  F  </first_frame>
            <second_frame>  W  I  I  I  S  *  L  C  Q  K  L  G  S  *  *  V  N  Y  V  N  F  V  V  F  L  H  L  G  W  *  R  T  R  A  I  S  S  W  Y  L  V  A  *  V  E  R  V  W  *  H  G  E  I  T  G  V  A  W  G  I  C  C  T  I  F  R  A  V  S  L  Y  S  C  Q  K  R  *  C  A  L  V  H  C  I  W  Y  S  S  Y  I  E  D  N  F  A  Y  L  G  F  G  P  G  P  Y  F  A  Y  D  I  F  A  E  L  L  G  K  T  V  D  V  F  H  Q  Q  F  Y  L  D  E  E  L  A  P  Q  K  T  D  Q  Q  I  A  S  L  Y  H  L  T  T  T  M  N  Q  H  C  Y  I  D  S  I  F  V  E  S  N  F  L  Q  A  R  F  I  F  Q  L  V  W  I  L  L  L  T  E  H  K  L  R  P  S  I  T  T  D  S  S  L  G  S  I  M  C  Y  I  V  Q  L  I  H  G  L  S  Y  K  D  L  L  R  I  I  L  I  T  F  L  W  S  M  S  V  A  F  Q  *  K  N  S  I  L  T  I  S  N  L  G  A  V  N  K  K  P  G  E  G  Y  T  K  A  E  Q  M  D  G  *  W  L  S  R  K  Y  T  R  S  H  F  I  N  F  Q  H  C  T  V  C  L  D  Y  N  W  *  E  R  A  T  N  I  V  P  Y  S  N  L  E  V  K  D  G  S  I  V  M  N  P  P  A  D  T  C  H  T  T  S  F  W  A  E  E  E  Q  Q  N  W  K  A  F  A  K  A  N  L  G  P  M  P  I  *  Q  L  A  M  G  R  S  N  K  T  G  R  P  L  Q  R  R  I  W  D  P  C  P  F  K  N  Y  L  K  G  *  R  M  R  R  S  A  L  C  K  L  L  T  K  Y  L  V  L  S  S  L  S  L  S  S  I  S  N  P  F  L  L  S  V  L  L  N  C  F  V  I  S  I  M  S  S  *  I  D  L  S  I  V  *  I  S </second_frame>
            <third_frame>   G  S  *  *  V  N  Y  V  K  N  L  D  H  N  K  L  I  M  S  T  L  W  Y  S  C  I  W  V  G  K  G  Q  E  Q  F  L  P  G  I  L  L  P  K  S  R  E  F  G  S  T  V  K  L  L  G  L  L  G  A  F  V  A  R  Y  S  E  Q  S  P  Y  I  L  V  K  K  D  D  V  L  L  F  T  V  F  G  I  V  H  I  S  K  I  T  L  L  I  *  A  L  V  L  V  L  I  L  L  M  I  Y  L  L  S  Y  L  V  R  Q  W  M  Y  F  T  S  S  S  I  L  M  K  N  L  H  R  K  K  L  T  N  R  L  P  H  F  I  T  *  L  L  Q  *  I  N  I  V  T  L  I  A  S  L  S  R  V  I  S  C  K  Q  G  S  Y  F  S  L  F  G  S  Y  C  *  R  S  T  S  L  G  Q  A  *  L  L  I  Q  V  W  A  Q  L  C  V  I  *  C  N  L  F  M  D  *  A  T  K  I  Y  *  E  L  S  *  L  H  F  Y  G  V  *  V  W  L  S  S  K  R  I  P  F  S  Q  Y  Q  I  W  E  R  L  I  K  N  Q  V  R  A  T  Q  R  Q  N  R  W  M  V  D  G  C  P  G  S  I  Q  D  H  I  L  *  I  S  N  I  A  Q  F  V  L  T  T  I  G  R  S  V  L  L  T  L  F  L  T  Q  T  L  R  S  R  T  G  V  L  L  *  T  R  L  P  I  L  V  T  Q  L  V  F  G  P  R  R  S  N  K  T  G  R  P  L  Q  R  R  I  W  D  P  C  P  F  N  N  *  L  W  G  E  A  T  K  L  E  G  L  C  K  G  E  F  G  T  H  A  H  L  R  T  I  *  K  D  D  G  *  E  G  A  L  Y  A  N  C  *  Q  N  I  *  S  F  H  P  F  L  *  V  L  F  L  I  H  F  F  L  V  C  Y  *  I  A  L  *  F  Q  L  *  V  H  K  *  I  Y  R  L  F  E  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49609" stop="49145"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CALVHCIWYSSYIEDNFAYLGFGPGPYFAYDIFAELLGKTVDVFHQQFYLDEELAPQKTDQQIASLYHLTTTMNQHCYIDSIFVESNFLQARFIFQLVWILLLTEHKLRPSITTDSSLGSIMCYIVQLIHGLSYKDLLRIILITFLWSMSVAFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="51070" PGL_stop="49853"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51070" e_stop="49853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51070" e_stop="49853" e_length="1218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51070" stop="49853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACTATCCCTAACTTGCCCTCGCCTCAGTCGTGGAATGCGCACCAGGTGTCCAATGAAAAGTCAAATAAGACTTCTGATATTGTTGTAGATGTTGAGAATGTAATAGTGCTAATCAAAAGTGGCAGTGCTGAAATGTTGGTTACTCAAGCAAAAGAGAAGATTTTTCATTCGATTTCGGATGAAACCAAAGAGGAGGTGGAGTTCCATGTTTCACAACACATTAGTGAACCACTTATATACAACAACAATGAGGCACACAAGATGTTTGTGTGAAAAATGAAGATAATTTTTAATTTTTTGGAGGTACAAAAAATATTTTAGATATATAGTAGAACTTTCTAGAATTTGGTAGAATAAATATCTTTAATATTTATAGTTAAGAAAAATCTATTGCTCTACATAATTAGATATTTATAGTAAAGTATAGAATAATTTAGATTCTTGTTAAATAATTAGAAGATAAGGTTATCTAAATTTTTCTTGTAGATCTTTCTAGAATAATTTTTAGAAGTATCTCTATACTAGTATAAATAGGGGTGGTCATAGTCATTTGTAATCAACCCAAACCAAATAGTCTATCAAAATTCTCTTATTCAAAATATTTCTTCACCTTTCTAGTTTCCTCTTTTTAGTTGAATCTTCCGATCTTATTTAACGATCTTGAGCTAGGAGAAGATTTACTGATTATACTTTTCTTCTGCTATTCTCTACAGTTTGATGGATATTCTTTAGGATGTAAGGATGTTATTCTAGAATCACACAAGGTGCTTATGATTACCACAGATACTATTGAGGAAAATGACTATGCTATTGATGTTGATAATGAAGACAGGACTGAGGAAGAAGAAGAAGAAAAGCTTTTAATCATTGAAAATAAAATAGGACAATCGGCTTCGGCATTTGTGGGAATACTTCCATTATGGATTGATTCTACATTTTCTAGTTTCGGTGACTTTGCCATGTTTTGTATGCTACATAAATTTGGGATAGCTCGATGTTTGGAGGAGTTCTCTGAAATGCTTTCAACTTGTAGATATGACCATCTTACTAACAGAGGTATAAATGATCACTTTAGTAGACTTGGTCGTGCTTCACTTATCTTAACTTTCCAATTGTTTCCACCTGATCAATTCGGATTAGCGTTTCCATTTGATCCTGGCTCTCGCTCACTTACGATGTTCCTTAGAGTTATGAGAAACTATGTATTTTGTGTCG</gDNA_template>
            <first_frame> N  T  I  P  N  L  P  S  P  Q  S  W  N  A  H  Q  V  S  N  E  K  S  N  K  T  S  D  I  V  V  D  V  E  N  V  I  V  L  I  K  S  G  S  A  E  M  L  V  T  Q  A  K  E  K  I  F  H  S  I  S  D  E  T  K  E  E  V  E  F  H  V  S  Q  H  I  S  E  P  L  I  Y  N  N  N  E  A  H  K  M  F  V  *  K  M  K  I  I  F  N  F  L  E  V  Q  K  I  F  *  I  Y  S  R  T  F  *  N  L  V  E  *  I  S  L  I  F  I  V  K  K  N  L  L  L  Y  I  I  R  Y  L  *  *  S  I  E  *  F  R  F  L  L  N  N  *  K  I  R  L  S  K  F  F  L  *  I  F  L  E  *  F  L  E  V  S  L  Y  *  Y  K  *  G  W  S  *  S  F  V  I  N  P  N  Q  I  V  Y  Q  N  S  L  I  Q  N  I  S  S  P  F  *  F  P  L  F  S  *  I  F  R  S  Y  L  T  I  L  S  *  E  K  I  Y  *  L  Y  F  S  S  A  I  L  Y  S  L  M  D  I  L  *  D  V  R  M  L  F  *  N  H  T  R  C  L  *  L  P  Q  I  L  L  R  K  M  T  M  L  L  M  L  I  M  K  T  G  L  R  K  K  K  K  K  S  F  *  S  L  K  I  K  *  D  N  R  L  R  H  L  W  E  Y  F  H  Y  G  L  I  L  H  F  L  V  S  V  T  L  P  C  F  V  C  Y  I  N  L  G  *  L  D  V  W  R  S  S  L  K  C  F  Q  L  V  D  M  T  I  L  L  T  E  V  *  M  I  T  L  V  D  L  V  V  L  H  L  S  *  L  S  N  C  F  H  L  I  N  S  D  *  R  F  H  L  I  L  A  L  A  H  L  R  C  S  L  E  L  *  E  T  M  Y  F  V  S </first_frame>
            <second_frame>  T  L  S  L  T  C  P  R  L  S  R  G  M  R  T  R  C  P  M  K  S  Q  I  R  L  L  I  L  L  *  M  L  R  M  *  *  C  *  S  K  V  A  V  L  K  C  W  L  L  K  Q  K  R  R  F  F  I  R  F  R  M  K  P  K  R  R  W  S  S  M  F  H  N  T  L  V  N  H  L  Y  T  T  T  M  R  H  T  R  C  L  C  E  K  *  R  *  F  L  I  F  W  R  Y  K  K  Y  F  R  Y  I  V  E  L  S  R  I  W  *  N  K  Y  L  *  Y  L  *  L  R  K  I  Y  C  S  T  *  L  D  I  Y  S  K  V  *  N  N  L  D  S  C  *  I  I  R  R  *  G  Y  L  N  F  S  C  R  S  F  *  N  N  F  *  K  Y  L  Y  T  S  I  N  R  G  G  H  S  H  L  *  S  T  Q  T  K  *  S  I  K  I  L  L  F  K  I  F  L  H  L  S  S  F  L  F  L  V  E  S  S  D  L  I  *  R  S  *  A  R  R  R  F  T  D  Y  T  F  L  L  L  F  S  T  V  *  W  I  F  F  R  M  *  G  C  Y  S  R  I  T  Q  G  A  Y  D  Y  H  R  Y  Y  *  G  K  *  L  C  Y  *  C  *  *  *  R  Q  D  *  G  R  R  R  R  K  A  F  N  H  *  K  *  N  R  T  I  G  F  G  I  C  G  N  T  S  I  M  D  *  F  Y  I  F  *  F  R  *  L  C  H  V  L  Y  A  T  *  I  W  D  S  S  M  F  G  G  V  L  *  N  A  F  N  L  *  I  *  P  S  Y  *  Q  R  Y  K  *  S  L  *  *  T  W  S  C  F  T  Y  L  N  F  P  I  V  S  T  *  S  I  R  I  S  V  S  I  *  S  W  L  S  L  T  Y  D  V  P  *  S  Y  E  K  L  C  I  L  C   </second_frame>
            <third_frame>   H  Y  P  *  L  A  L  A  S  V  V  E  C  A  P  G  V  Q  *  K  V  K  *  D  F  *  Y  C  C  R  C  *  E  C  N  S  A  N  Q  K  W  Q  C  *  N  V  G  Y  S  S  K  R  E  D  F  S  F  D  F  G  *  N  Q  R  G  G  G  V  P  C  F  T  T  H  *  *  T  T  Y  I  Q  Q  Q  *  G  T  Q  D  V  C  V  K  N  E  D  N  F  *  F  F  G  G  T  K  N  I  L  D  I  *  *  N  F  L  E  F  G  R  I  N  I  F  N  I  Y  S  *  E  K  S  I  A  L  H  N  *  I  F  I  V  K  Y  R  I  I  *  I  L  V  K  *  L  E  D  K  V  I  *  I  F  L  V  D  L  S  R  I  I  F  R  S  I  S  I  L  V  *  I  G  V  V  I  V  I  C  N  Q  P  K  P  N  S  L  S  K  F  S  Y  S  K  Y  F  F  T  F  L  V  S  S  F  *  L  N  L  P  I  L  F  N  D  L  E  L  G  E  D  L  L  I  I  L  F  F  C  Y  S  L  Q  F  D  G  Y  S  L  G  C  K  D  V  I  L  E  S  H  K  V  L  M  I  T  T  D  T  I  E  E  N  D  Y  A  I  D  V  D  N  E  D  R  T  E  E  E  E  E  E  K  L  L  I  I  E  N  K  I  G  Q  S  A  S  A  F  V  G  I  L  P  L  W  I  D  S  T  F  S  S  F  G  D  F  A  M  F  C  M  L  H  K  F  G  I  A  R  C  L  E  E  F  S  E  M  L  S  T  C  R  Y  D  H  L  T  N  R  G  I  N  D  H  F  S  R  L  G  R  A  S  L  I  L  T  F  Q  L  F  P  P  D  Q  F  G  L  A  F  P  F  D  P  G  S  R  S  L  T  M  F  L  R  V  M  R  N  Y  V  F  C  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50435" stop="49854"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNLPILFNDLELGEDLLIILFFCYSLQFDGYSLGCKDVILESHKVLMITTDTIEENDYAIDVDNEDRTEEEEEEKLLIIENKIGQSASAFVGILPLWIDSTFSSFGDFAMFCMLHKFGIARCLEEFSEMLSTCRYDHLTNRGINDHFSRLGRASLILTFQLFPPDQFGLAFPFDPGSRSLTMFLRVMRNYVFCV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51070" stop="50795"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTIPNLPSPQSWNAHQVSNEKSNKTSDIVVDVENVIVLIKSGSAEMLVTQAKEKIFHSISDETKEEVEFHVSQHISEPLIYNNNEAHKMFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="61359" PGL_stop="63372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61359" e_stop="61917"/>
            <exon e_start="62267" e_stop="63372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.919"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="61359" e_stop="61917" e_length="559"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61918" i_stop="62266" i_length="349"/>
          </intron>
          <exon e_serial="2" e_score="0.941">
            <gDNA_exon_boundary e_start="62267" e_stop="63372" e_length="1106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61359" stop="61917"/>
              <exon start="62267" stop="63372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315285" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATCAAGCATGATGAAGTGATTGAATCTCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAAGGAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTATGGGATCGGGTGTGACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGGACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGATCGG : GGTGTCACGAACCGACACGTAGATTTAGGGGATCGAAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATAAATCTTGAAAGATGTTTATATACTCAATCTAATGAACATGATTACCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTAAGTACCTGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTTTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGTCAGTCTTCGTCACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTAGTCGTTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTTTTATTTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTGGGTCGTGACAAACTTGATATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTATGGAACGGTAGGGGGACGCCTTTACTTTTATTTGAGAGGCTATAAGACTTTAGGAAAATTTCATTCTTTCTTTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCGGCGGGACAGGGTGCGTCTGAGCAAGCTACTGGGGCTGTTG</gDNA_template>
            <first_frame> K  S  S  V  E  V  G  Y  G  F  H  A  F  I  V  N  S  *  *  R  M  I  C  I  G  S  I  V  N  P  A  M  C  L  I  V  C  M  H  E  R  D  Y  I  I  V  I  I  S  S  M  M  K  *  L  N  L  K  S  *  *  K  P  N  L  F  L  M  M  M  P  W  *  G  R  R  L  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  W  K  E  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  M  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  H  R  F  R  G  S   : G  C  H  E  P  T  R  R  F  R  G  S  K  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  I  N  L  E  R  C  L  Y  T  Q  S  N  E  H  D  Y  Q  M  S  M  V  S  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  F  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  *  V  P  V  F  C  T  D  P  Y  F  Y  C  F  L  L  F  *  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  S  V  F  V  T  S  D  L  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  F  R  I  L  L  V  S  R  L  I  V  D  V  L  V  M  M  T  S  R  F  W  G  I  I  D  V  E  F  *  K  L  M  N  W  S  F  I  *  *  V  *  V  F  R  I  T  F  C  *  Y  Y  I  E  M  L  R  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  N  P  V  W  V  V  T  N  L  I  S  E  H  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  Y  G  T  V  G  G  R  L  Y  F  Y  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  Q  H  R  R  D  R  V  R  L  S  K  L  L  G  L  L </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  F  M  L  S  *  *  T  L  N  R  E  *  Y  V  L  V  V  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  Q  A  *  *  S  D  *  I  S  N  L  D  K  N  L  I  S  F  *  *  *  C  L  G  K  G  E  G  L  M  N  *  S  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  G  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  L  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  W  D  R  V  *  R  T  D  T  *  I  *  G  I  G  C  H  G  P  T  R  R  F  R  G  S  G  V  T  N  R  H  I  D  L  G  D  R  :  G  V  T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  Y  I  L  N  L  M  N  M  I  T  K  *  V  W  Y  R  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  K  Y  L  C  F  V  L  T  P  T  F  I  V  F  F  F  F  N  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  S  H  R  I  F  R  V  S  *  C  F  *  L  G  L  D  L  L  L  Q  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  E  Y  S  *  L  V  V  *  S  *  M  F  L  *  *  *  L  P  D  F  G  E  *  *  M  L  N  F  R  S  *  *  I  G  L  L  F  N  E  F  K  S  S  A  L  L  S  V  D  I  I  L  K  C  *  G  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  T  R  F  G  S  *  Q  T  *  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  M  E  R  *  G  D  A  F  T  F  I  *  E  A  I  R  L  *  E  N  F  I  L  S  F  F  L  S  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  S  T  G  G  T  G  C  V  *  A  S  Y  W  G  C   </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  S  C  F  H  S  K  L  L  I  E  N  D  M  Y  W  *  Y  C  K  P  C  Y  V  L  N  C  M  H  A  *  T  *  L  Y  N  C  D  Y  I  K  H  D  E  V  I  E  S  Q  I  L  I  K  T  *  S  L  F  N  D  D  A  L  V  R  E  K  A  *  *  T  K  V  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  M  E  G  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  *  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  Y  G  I  G  C  D  E  P  T  R  R  F  R  G  S  G  V  T  D  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G :   V  S  R  T  D  T  *  I  *  G  I  E  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  K  S  *  K  M  F  I  Y  S  I  *  *  T  *  L  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  I  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  C  V  L  Y  *  P  L  L  L  L  F  S  S  F  L  I  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  V  S  L  R  H  I  G  S  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  K  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  *  N  T  L  S  *  S  F  D  R  R  C  S  C  D  D  D  F  Q  I  L  G  N  N  R  C  *  I  L  E  V  N  E  L  V  F  Y  L  M  S  L  S  L  P  H  Y  F  L  L  I  L  Y  *  N  V  K  V  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  Q  P  G  L  G  R  D  K  L  D  I  R  A  L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  W  N  G  R  G  T  P  L  L  L  F  E  R  L  *  D  F  R  K  I  S  F  F  L  S  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  P  A  G  Q  G  A  S  E  Q  A  T  G  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63085" stop="63372"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRWSHHTRTSLVESYGTVGGRLYFYLRGYKTLGKFHSFFLSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHQHRRDRVRLSKLLGLL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62698" stop="62910"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVFVTSDLQGELMLLAWTGSSSSSLDALNFRHGLASYVFLAFRILLVSRLIVDVLVMMTSRFWGIIDVEF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62534" stop="62734"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTKYLCFVLTPTFIVFFFFNCGVQQTCRHLRLNSNSSQSSSHRIFRVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="63811" PGL_stop="63379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63811" e_stop="63379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="63811" e_stop="63379" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63811" stop="63379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTC</gDNA_template>
            <first_frame> P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  R  V  G  W  G  G  N  P  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  A  L  </first_frame>
            <second_frame>  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  M  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  L  L  K  P  E  V  L  A  Q  K  T  L  E  V  P  D  L  D  Q  T  T  H  *  D  R  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </second_frame>
            <third_frame>   L  E  D  R  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  C  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  F  *  N  R  R  C  W  R  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  E  I  G  E  N  L  I  D  H  L  *  G  R  L  G  W  Q  S  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  S  C  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63577" stop="63380"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISRVGWGGNPSFCTCSVSPSSPSLITSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAAAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="65568" PGL_stop="64331"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65568" e_stop="64331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="65568" e_stop="64331" e_length="1238"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65568" stop="64910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65096" stop="64766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64889" stop="64331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTATTCAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATTGAAATGGGGCGAGTACCCGATTCAAGGTCAATACAAAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACCACCGAAACCGACTTAATCGAAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAGGGAGATGATACGCACCGGATTGGAAGTGTAGTCGCCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAGTCCAAAATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATCTCCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGATAGCATCAGATGCCTCCGCTTCAGATCGCCCAGGGAAAGTGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCTCAACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTTTCCCCACATCCATAACACTATCTGGAGTCAAGCATAGGTCTCTTAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGACCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACC</gDNA_template>
            <first_frame> S  M  R  G  R  G  Y  L  F  L  I  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  D  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  L  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  R  E  M  I  R  T  G  L  E  V  *  S  P  S  Q  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  S  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  I  A  S  D  A  S  A  S  D  R  P  G  K  V  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  Q  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  Y  L  E  S  S  I  G  L  L  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  M  G  R  P  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S   </first_frame>
            <second_frame>  Q  C  E  E  E  D  T  C  S  *  *  L  P  Y  S  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  L  K  W  G  E  Y  P  I  Q  G  Q  Y  K  N  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  P  P  K  P  T  *  S  K  A  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  G  R  *  Y  A  P  D  W  K  C  S  R  P  P  K  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  S  P  K  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  S  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  T  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  *  H  Q  M  P  P  L  Q  I  A  Q  G  K  C  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  L  G  R  F  G  D  H  H  Y  L  N  H  H  V  L  Q  N  D  G  L  Y  H  D  H  L  Y  L  *  P  L  G  V  Y  N  S  V  L  D  N  S  S  *  Y  V  Q  F  P  H  I  H  N  T  I  W  S  Q  A  *  V  S  *  R  S  V  D  Q  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  D  L  S  N  L  R  N  L  V  L  *  S  K  N  H  *  T  H  </second_frame>
            <third_frame>   N  A  R  K  R  I  L  V  L  N  S  Y  L  I  Q  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  *  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  *  N  G  A  S  T  R  F  K  V  N  T  K  I  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  H  R  N  R  L  N  R  R  H  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  A  L  P  N  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  V  Q  N  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  L  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  S  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  M  T  A  S  T  M  T  T  S  T  S  S  H  W  G  S  I  T  L  F  W  T  I  P  P  N  M  S  S  F  P  T  S  I  T  L  S  G  V  K  H  R  S  L  R  E  V  L  T  S  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  T  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64657" stop="64403"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAVLVTTITSTTTSSRMTASTMTTSTSSHWGSITLFWTIPPNMSSFPTSITLSGVKHRSLREVLTSLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65361" stop="65116"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPDSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDLIEGTWVVSSLRCAKKAKHPLLTIFLARRREMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65429" stop="65232"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLCLTTLEVGLLTLLTPREPFYKGVLKWGEYPIQGQYKNQYPYLVAYQEDLQGTHPETHEPPKPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="67569" PGL_stop="67393"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67569" e_stop="67393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="67569" e_stop="67393" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67569" stop="67393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTACTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGACACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  T  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  S  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  K  W  G  H  I  N  T  *  V  I  A  I  T  V  *  K  L  R  *  G  *  E  A  I  P  M  D  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  P  F  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107N23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="70048" PGL_stop="69712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70048" e_stop="69712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="70048" e_stop="69712" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70048" stop="69712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTTAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTTGATACCATACTCATTTGGTAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTTCGCTCCCTCATATTCATTAATCCTCTTGTGTTGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCTATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  *  H  V  A  T  T  N  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  D  T  I  L  I  W  *  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  S  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  I  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  L  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  L  V  R  D  T  P  I  P  *  I  Y  V  S  V  R  D  T  L  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  L  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  *  Y  H  T  H  L  V  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  F  A  P  S  Y  S  L  I  L  L  C  W  Y  V  T  L  R  S  P  K  S  T  C  R  F  V  T  P  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107N23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="77271" PGL_stop="76941"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77271" e_stop="76941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="77271" e_stop="76941" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77271" stop="76941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340499" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCCTTCTTTTTCGTATTTCGGAGGTTCTTAAAGGTTCAAGTTGCCTTATCAAAGTTCAAGTTGCCTTATCAAACCTTCCACTTTTAAAACTGACGGATAGATCTCAAGACCAAGATTCGAAGCAGAGCTGGAGTCAGAATTTGGACCAAAGAGCTCAATTTTTTTTTCTTTCTTTTTTTCTTTTGGCATTGTATTTGGGCATAAGCCCTTGTTGTCTTTATCTTTCCCTTTATTATTTATTGTATTACTTGACTAGAATTTAGGACACGTACAATAATCAAAATAGGTCAACAAAACCCAAAACAAATGGGTCCAAAAATTCGGTCAAG</gDNA_template>
            <first_frame> S  P  S  F  S  Y  F  G  G  S  *  R  F  K  L  P  Y  Q  S  S  S  C  L  I  K  P  S  T  F  K  T  D  G  *  I  S  R  P  R  F  E  A  E  L  E  S  E  F  G  P  K  S  S  I  F  F  S  F  F  F  S  F  G  I  V  F  G  H  K  P  L  L  S  L  S  F  P  L  L  F  I  V  L  L  D  *  N  L  G  H  V  Q  *  S  K  *  V  N  K  T  Q  N  K  W  V  Q  K  F  G  Q  </first_frame>
            <second_frame>  L  L  L  F  R  I  S  E  V  L  K  G  S  S  C  L  I  K  V  Q  V  A  L  S  N  L  P  L  L  K  L  T  D  R  S  Q  D  Q  D  S  K  Q  S  W  S  Q  N  L  D  Q  R  A  Q  F  F  F  L  S  F  F  L  L  A  L  Y  L  G  I  S  P  C  C  L  Y  L  S  L  Y  Y  L  L  Y  Y  L  T  R  I  *  D  T  Y  N  N  Q  N  R  S  T  K  P  K  T  N  G  S  K  N  S  V  K </second_frame>
            <third_frame>   S  F  F  F  V  F  R  R  F  L  K  V  Q  V  A  L  S  K  F  K  L  P  Y  Q  T  F  H  F  *  N  *  R  I  D  L  K  T  K  I  R  S  R  A  G  V  R  I  W  T  K  E  L  N  F  F  F  F  L  F  F  F  W  H  C  I  W  A  *  A  L  V  V  F  I  F  P  F  I  I  Y  C  I  T  *  L  E  F  R  T  R  T  I  I  K  I  G  Q  Q  N  P  K  Q  M  G  P  K  I  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77270" stop="77007"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLFRISEVLKGSSCLIKVQVALSNLPLLKLTDRSQDQDSKQSWSQNLDQRAQFFFLSFFLLALYLGISPCCLYLSLYYLLYYLTRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="115144" PGL_stop="114555"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115144" e_stop="114555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="115144" e_stop="114555" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115144" stop="114555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTAATCCAAGCTTTGTTATTCCGGGAGATTTTCTCTAGTTTTTCAGCGATCTCAGCATAAGGGCATTCTCTATAAGATCCACCTGCTATAGTGTCCAACACCGCTTTGTTGTTATCACCCTGTCCCCGATAGAAGTATTCCTTCAGTGAATAATCATCTATATGGTGATTTTGAACACTTCTATAGAATGAGGTGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTCACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACTGGATAGTAGCGTGCTAAGAAAACATCTCTTAATTTGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAACCATATAGCAGCCTCTCCAGTCAGTGAGAGAGGAAACACTCTGAGACCTATTACATCTAGATCCAAATCACGCCTCCCCACACAACTTTTACAAACTGCCCTTACCTTAGCTATATAGGCATGTGGATCCTCAGAAGGTAGCCCTGAGAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAA</gDNA_template>
            <first_frame> T  A  K  V  F  L  P  V  S  D  F  L  V  I  Q  A  L  L  F  R  E  I  F  S  S  F  S  A  I  S  A  *  G  H  S  L  *  D  P  P  A  I  V  S  N  T  A  L  L  L  S  P  C  P  R  *  K  Y  S  F  S  E  *  S  S  I  W  *  F  *  T  L  L  *  N  E  V  N  L  S  Q  E  L  L  T  D  S  P  G  S  A  T  K  L  F  T  L  S  L  W  F  S  F  L  E  T  G  *  *  R  A  K  K  T  S  L  N  L  F  Q  V  K  I  E  L  Y  G  S  S  V  N  H  I  A  A  S  P  V  S  E  R  G  N  T  L  R  P  I  T  S  R  S  K  S  R  L  P  T  Q  L  L  Q  T  A  L  T  L  A  I  *  A  C  G  S  S  E  G  S  P  E  N  K  P  L  A  V  S  I  C  I  R  L  L  V  T  T   </first_frame>
            <second_frame>  L  R  R  C  F  S  L  Y  Q  T  S  *  *  S  K  L  C  Y  S  G  R  F  S  L  V  F  Q  R  S  Q  H  K  G  I  L  Y  K  I  H  L  L  *  C  P  T  P  L  C  C  Y  H  P  V  P  D  R  S  I  P  S  V  N  N  H  L  Y  G  D  F  E  H  F  Y  R  M  R  *  I  Y  P  K  N  Y  *  L  T  L  L  V  V  P  Q  S  C  S  L  C  L  C  G  L  V  S  W  R  L  D  S  S  V  L  R  K  H  L  L  I  C  S  K  *  R  L  S  C  M  G  A  Q  *  T  I  *  Q  P  L  Q  S  V  R  E  E  T  L  *  D  L  L  H  L  D  P  N  H  A  S  P  H  N  F  Y  K  L  P  L  P  *  L  Y  R  H  V  D  P  Q  K  V  A  L  R  T  N  L  W  Q  *  A  F  A  S  G  Y  *  L  P  Q  </second_frame>
            <third_frame>   C  E  G  V  S  P  C  I  R  L  P  S  N  P  S  F  V  I  P  G  D  F  L  *  F  F  S  D  L  S  I  R  A  F  S  I  R  S  T  C  Y  S  V  Q  H  R  F  V  V  I  T  L  S  P  I  E  V  F  L  Q  *  I  I  I  Y  M  V  I  L  N  T  S  I  E  *  G  E  S  I  P  R  T  T  N  *  L  S  W  *  C  H  K  V  V  H  S  V  F  V  V  *  F  L  G  D  W  I  V  A  C  *  E  N  I  S  *  F  V  P  S  E  D  *  V  V  W  E  L  S  E  P  Y  S  S  L  S  S  Q  *  E  R  K  H  S  E  T  Y  Y  I  *  I  Q  I  T  P  P  H  T  T  F  T  N  C  P  Y  L  S  Y  I  G  M  W  I  L  R  R  *  P  *  E  Q  T  S  G  S  E  H  L  H  Q  A  T  S  Y  H  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107N23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="120626" PGL_stop="120911"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120626" e_stop="120911"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="120626" e_stop="120911" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120626" stop="120911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGGTTCGTTGGTCTAATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACATCAACAGCGGCCAGACAAGAAACCACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> I  G  S  L  V  *  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  S  T  A  A  R  Q  E  T  T  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  N  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  Q  R  P  D  K  K  P  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  I  N  S  G  Q  T  R  N  H  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120675" stop="120911"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFILSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQQRPDKKPLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="120984" PGL_stop="121537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120984" e_stop="121537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="120984" e_stop="121537" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120984" stop="121537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATGTGATACTAGGGTAGTGACTCCTCCACCGACTAAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTTCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCGTGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCACGAGCTACTACACAAAATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  M  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  K  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  G  P  D  T  P  S  V  F  C  T  S  T  S  G  F  G  G  T  T  C  G  Y  Y  G  S  P  R  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  R  F  S  G  *  L  S  R  A  T  T  Q  N  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  R  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  C  D  T  R  V  V  T  P  P  P  T  K  E  V  I  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  S  E  V  Q  H  A  A  T  M  A  P  R  V  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  I  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  V  I  L  G  *  *  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  M  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  A  R  H  P  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  T  S  Y  Y  T  K  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  I  S  S  V  N  Q  *  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120985" stop="121536"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPCDTRVVTPPPTKEVIREGEDGENEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQASEVQHAATMAPRVDVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHIECQPIEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="123627" PGL_stop="120988"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123627" e_stop="120988"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="123627" e_stop="120988" e_length="2640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123627" stop="122915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123038" stop="122281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122424" stop="120988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTTGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACTAGTATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCTTTGCCCATATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTCCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCTAAGAAAGCTAAACACCCTTTACTAATAATTTTCTTAGCACAAAGAAAGGAGATGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAGGAAAACGTGGATCCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCACTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTTACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGAGACAGTTTTTCCTAATATGTCCAATCTCCCCACATCCATAACACTCTCTGGATTCAAGCATAAGCCTCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGGGAAGACTGAATTGGTCGGACTGAGTAACTTCCCAAACCTTGTCCTCTAGTGTAAGAACCATTAAACTAACCCCCCTTTCGAAATCTCTTTGATGTCGATGCTGTGGTGAAGTAGTCTAGCTTCACTCCTTCCACATCTACCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCGCAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAACATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATTTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCACGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGAAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTTAGTCGGTGGAGGAGTCACTACCCTAGTATCACATGGGCT</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  W  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  *  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  V  H  E  R  S  R  G  I  R  *  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  L  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  *  E  S  *  T  P  F  T  N  N  F  L  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  L  P  H  *  R  V  C  P  R  L  G  *  R  H  H  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  *  N  H  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  K  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  G  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  H  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  M  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  E  T  V  F  P  N  M  S  N  L  P  T  S  I  T  L  S  G  F  K  H  K  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  G  R  L  N  W  S  D  *  V  T  S  Q  T  L  S  S  S  V  R  T  I  K  L  T  P  L  S  K  S  L  *  C  R  C  C  G  E  V  V  *  L  H  S  F  H  I  Y  H  K  V  Y  H  F  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  R  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  N  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  F  V  *  *  L  V  T  V  N  Q  K  I  V  S  I  L  R  F  R  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  Y  P  S  I  T  W  A </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  F  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  F  A  H  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  S  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  Q  R  K  E  M  M  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  I  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  R  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  V  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  T  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  L  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  R  Q  F  F  L  I  C  P  I  S  P  H  P  *  H  S  L  D  S  S  I  S  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  R  E  D  *  I  G  R  T  E  *  L  P  K  P  C  P  L  V  *  E  P  L  N  *  P  P  F  R  N  L  F  D  V  D  A  V  V  K  *  S  S  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  A  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  T  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  T  R  G  A  I  V  A  A  C  C  T  S  E  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  L  V  G  G  G  V  T  T  L  V  S  H  G   </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  L  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  L  V  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  L  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  I  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  P  I  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  L  R  K  L  N  T  L  Y  *  *  F  S  *  H  K  E  R  R  *  C  G  P  D  W  K  C  S  H  P  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  L  E  S  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  E  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  R  K  T  W  I  Q  D  Q  T  I  Q  K  S  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  L  G  R  F  G  Y  H  H  Y  L  D  H  H  V  L  Q  N  D  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  *  D  S  F  S  *  Y  V  Q  S  P  H  I  H  N  T  L  W  I  Q  A  *  A  S  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  G  K  T  E  L  V  G  L  S  N  F  P  N  L  V  L  *  C  K  N  H  *  T  N  P  P  F  E  I  S  L  M  S  M  L  W  *  S  S  L  A  S  L  L  P  H  L  P  Q  S  L  P  L  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  F  C  V  V  A  R  D  S  Q  P  E  N  R  K  H  P  Q  I  P  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  P  R  G  E  P  *  *  P  H  V  V  P  P  K  P  E  V  L  V  Q  K  T  L  G  V  S  G  P  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  H  F  P  H  P  P  L  L  L  L  P  P  *  S  V  E  E  S  L  P  *  Y  H  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122196" stop="121942"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAVLVTTITSTTTSSRMTASTMTTSTSSYWGSITLSETVFPNMSNLPTSITLSGFKHKPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121395" stop="121141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIVSILRFRTLEDWRFQFQELTEKFMLIICHYRPSSQTWKRAYFQWNIHAGSHSSRMLYLRSLRCWCRKHWGCLALIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122900" stop="122655"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLIIFLAQRKEMMRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123431" stop="123234"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTSISSINTITKRSKYGLKIPFIKFMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="121611" PGL_stop="123055"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121611" e_stop="121797"/>
            <exon e_start="122542" e_stop="123055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.893"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.893">
            <gDNA_exon_boundary e_start="121611" e_stop="121797" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="121798" i_stop="122541" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="122542" e_stop="123055" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121611" stop="121797"/>
              <exon start="122542" stop="123055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTAATGTTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGCGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTT : GATGTGATTCTAGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCATCTCCTTTCTTTGTGCTAAGAAAATTATTAGTAAAGGGTGTTTAGCTTTCTTAGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGGACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  *  C  L  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R  S  G  R  L   : *  C  D  S  R  Y  D  L  A  F  S  A  I  C  N  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  G  *  L  H  F  Q  S  G  P  H  H  L  L  S  L  C  *  E  N  Y  *  *  R  V  F  S  F  L  S  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  T  T  S  R  V  I  G  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  V  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  A  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  M  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  C  A  K  K  I  I  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  D  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  M  F  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  K  S  G  F  A  G  L  R  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  K  W  *  T  L :   M  *  F  *  V  *  L  G  F  L  R  N  L  Q  S  W  I  V  M  L  K  W  *  R  *  P  S  L  G  Q  T  R  *  C  G  R  V  T  T  L  P  I  R  S  A  S  S  P  F  F  V  L  R  K  L  L  V  K  G  V  *  L  S  *  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  H  N  F  K  S  Y  W  T  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121612" stop="121797"/>
                    <exon start="122542" stop="123054"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNVYEAKFRALSRYATQLCFSPQERIRRFAKGLRSELRISALQIAATAKSFQEVVDFDVILGMTWLSPQFAILDCNAKMVTLAKPGTDPLVWEGDYTSNPVRIISFLCAKKIISKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLDKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 88 chains have been computed
$ 
$ memory statistics:
$ 275496 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 13118 bytes was the average size of a spliced alignment
$ 22088 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1472 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 105 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:40:53
-->
