<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:39:58"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335564" ref_strand="+" ref_description="SGN-U335564        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | peptidase M16 family protein / insulinase family protein, contains Pfam domain, PF05193: Peptidase M16 inactive domain; similar to insulin-degrading enzyme (Insulysin, Insulinase, Insulin protease) (Mouse) SWISS-PROT:Q9JHR7 | chr2:17436372-17443188 REVERSE | Aliases: T11A7.11, T11A7_11(evalue: 6e-67, score=250) genbank/nr: gi|15485612|emb|CAC67408.1| insulin degrading enzyme [Lycopersicon esculentum](evalue: 3e-97, score=357)">
      <seq>ggtgacaaagcaatatcagaatttcaagttccaacagccatatcaacaggttatgtattactgctcattactgctaaaagacaacatatggccttggaatgaagaacttgaagtgcttccacatcttaaagttgatgatctggttaagttctatccgcttttgatggctaggtcctttatggagtgctatgtagcaggaaatgttgaacaagctgaagcagagtccatgatacagcttattgaagatgtgttcttcaagggtccacagtcaatatcaaagcctctatttgcatctcagcatctgacaaacagagtggtcaatcttgaaagaggtgtaaattatgtctacgctgcagagggactaaatccaagtgatgaaaattcagctcttgttcattatattcaggtgcatcaggaggagggggggctgaatgtaaaacttcagctttttgctctcatagcaaagcatccagccttccaccagcttaaatcagtccagcaacttggttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="9996" stop="13160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10296" g_stop="10492" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10493" i_stop="10567" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10568" g_stop="10776" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="406" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10777" i_stop="12754" i_length="1978">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.721" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12755" g_stop="12860" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="512" r_length="106" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-U335564" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10296" e_stop="10492"/>
          <exon e_start="10568" e_stop="10776"/>
          <exon e_start="12755" e_stop="12860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGACAAAGCAATATCAGAATTTCAAGTTCCAACAGCCATATCAACAGGTTATGTATTACTGCTCATTACTGCTAAAAGACAACATATGGCCTTGGAATGAAGAACTTGAAGTGCTTCCACATCTTAAAGTTGATGATCTGGTTAAGTTCTATCCGCTTTTGATGGCTAGGTCCTTTATGGAGTGCTATGTAGCAGGTTACTTTTCTCAACAGCCATTTAAGTTGTTTCATTTTACATCTATTAACTTGTGAAATCCACTGCCTTTCTCAGGAAATGTTGAACAAGCTGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAGGTAAACCTTAAGTTGATGGAATGTGCATGTAATTGACAGCAAGTTTCTCTCTTCTTCTCTCTTGTTTTTTTCTTAGAAAAAATTGGTAAAAATGTTATCTTAAATGAGTTCCTTGGAGGTCCAATACTTGCACAAAATTAATATGGGTGCTTAGAAGCAAAAGTTTTCCATTTTATTGGATGAAACATCATCCAAAACCAAAAGTAGGTGCTGGATACCCCAAATCAAAAACTCTTGCCTTGCAACTATTTAGCACCACCAGAACTTGTAGAGTGCTTGATTTTATATGGATTTCTGTCATACTTAATGTGTTCTAGTGCCCTCATTATTGGTTCTGCTTTGTTATGTTGCAATTCCTGTTACTTCTTGCCACTTTTGATAAGGTAAATAGTTTCATCAATCTGGATTCGCTTATATAAGAAGGAAGTATTACCAAAAACTGGGATACTACAAAAACATGGTTCTTTACAAAGCACACAAAGTTCTATACAGATGGGAACCTCATTGATGAACCAAAAGGGGAAGCAGAAACAAGAGGTTGTTCCTCATATGCACAATGTCCATGTGGAGAGAGAGGAACAAAAGATGTTCTCATGGCACCCAAAATCTCATCCCTACCCTTAAAGCAAGTTTATTGATCACTCTTTTTGGTTGGGTTAAAAGACCAGATCTGCTTGATGGACTTCCCAACTTTCCAAGAACTTCAACACACAAAAACCTCTCTCAGTGAGCTTGGCATGGCCCAAGCGAGTCCAAAAAGTGAGAAGAACATGTTCCATAGGTCTGTTGCAAATGTGCGATTAGGAAACAGGTGATTGATAGATTCCGAGATGCATAAGCACATGTAACATCTGTTTAACCATTTGGAGTTCCTCCTTATGAGGTTATCCTGTGTCAAGCAATAATCTTTTAGAGTAATTGAACTGAAACAAATAACTTTATGTGGCAACCTAGTTCTCCATTAATATAAGAATTTTGGGTTTAGAACAAGCAATTAAAATTTGTGTGGCCATAAATCATCTCATTAAGGGTAAATGGAAAGTTTAAAGTTCAACTATTTCTAAATATGGAAAGGCGTATTTCTTTCTAGGACAAAGGGAGTAGTATTTATTCGTTTGTAGTAATGACATATCAAGTTGGAATTGGCAACTCATCAACTTTGGTGTTGACCCTTCTTTGTAGTGGGTATCCTATTGAGTACCCATATTACCTTTTATTTGTGAATTGGATTGCTCTTCTAGAGTCATGTAATTTTCCCACATTCTTGAATATTAATCTCCATTGAGGGGCCTTTTCCATTTTTCAACATTTAGGTCTCCTTGATTTTGAAGATCCGCTGTCTTGCTATCATCTCATGTTCCTTAATTCTTTCTTCCTTCTGGAAAAAATCCTTTATGCAAAGTCGTTCTAACTAAGGCTACCTTATAAGTCAATCTTGTGAGAATAATATGCCTATCGTGATGGCAGTTTTCTTGAGAGCCTTTTTGAATTTGATCATGAACTTCTAATCAAATAGTGTCTAATCCTTTGGATGACTTGAATTGCTTGTTTTAAGGCTTAGCGTAAGTTGAATAATCAGTTTCTTTTTCCATGACCCGTAAATTCCGTTTGTACTGCTGTCATGAGTAGTGAGAGTCCTAGATCTTCTAGTTCTATAACTTCACTCAACTTCTTAATGATCATAGTTATCTGTAGCAAATACTGCTTTAATCTCGAGAAGATATTTCTTCAAATATTGGATGTCTTTCAGAGATTTATTACTGGTCATGGAGGATATTGTTTTTCTCATTTGTTGGAACAAGAACCTTGACTACAGATATGCCAGTAAAGATTTTACCAATCAATCTTCAAGATCTTTTGACATATGATTGTTCTTTTCTAAACGGAAAACAAACTTGTCTAATGCATTTGTAATGAATTGTGTCATCAATCTTTTCCTGGTTCTTTGCTTCTCTAACAAGTTTGCTTAAGTTTCCAGGTGCATCAGGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATA</genome_strand>
        <mrna_strand>GGTGACAAAGCAATATCAGAATTTCAAGTTCCAACAGCCATATCAACAGGTTATGTATTACTGCTCATTACTGCTAAAAGACAACATATGGCCTTGGAATGAAGAACTTGAAGTGCTTCCACATCTTAAAGTTGATGATCTGGTTAAGTTCTATCCGCTTTTGATGGCTAGGTCCTTTATGGAGTGCTATGTAGCAG...........................................................................GAAATGTTGAACAAGCTGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCAGGAGGAGGGGGGGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCATCCAGCCTTCCACCAGCTTAAATCAGTCCAGCAACTTGGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316262" ref_strand="+" ref_description="SGN-U316262        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | peptidase M16 family protein / insulinase family protein, contains Pfam domain, PF05193: Peptidase M16 inactive domain; similar to insulin-degrading enzyme (Insulysin, Insulinase, Insulin protease) (Mouse) SWISS-PROT:Q9JHR7 | chr2:17436372-17443188 REVERSE | Aliases: T11A7.11, T11A7_11(evalue: 9e-134, score=473) genbank/nr: gi|15485612|emb|CAC67408.1| insulin degrading enzyme [Lycopersicon esculentum](evalue: 0, score=695)">
      <seq>gtgacaaagcaatatcagaatttcaagttccaacagccatatcaacaggttatgtattactgctcattactgctaaaagacaacatatggccttggaatgaagaacttgaagtgcttccacatcttaaagttgatgatctggttaagttctatccgcttttgatggctaggtcctttatggagtgctatgtagcaggaaatgttgaacaagctgaagcagagtccatgatacagcttattgaagatgtgttcttcaagggtccacagtcaatatcaaagcctctatttgcatctcagcatctgacaaacagagtggtcaatcttgaaagaggtgtaaattatgtctacgctgcagagggactaaatccaagtgatgaaaattcagctcttgttcattatattcaggtgcatcaggatgactttatgctgaatgtaaaacttcagctttttgctctcatagcaaagcagccagccttccaccagcttagatcagtcgagcaacttggttatatcactgtgctcatgcagaggagcgactctggtgttcacggggtgcagtttatcgttcagtcaactgcaaaggatcccaaatacattgacacaagagtggagttatttatgaagatgtttgagagcaagctttatgagatgactagtgatgaattcaagaataatgtcaatgcacttattgatatgaagcttgagaaacacaagaatttacgggaggaatctcggttttactggagggagatctcagatgggaccctcaagtttgatagacgagaccgtgagattgtcgcgttaaagcaactgactcaaaaggagctgacagatttcttcgatgaatatattaaagtcggtgttcctcggaagaaggccttaagtgtcagagtctatggaagctcacattcttctcaattccaagcacataagaatgagcagatggaaccaaatgcagttcagatagaagaaatatttagctttagacgatctcggcctctttatagttcattcaaaggaggctttggtcatgtgagattgtaagaggtcgtatagcagctcaagaagcccccgatgcagttgatatgttgcgttagcgagttcattacagaagcagttgatctgcaagatacctctctcgtattcagttgtacgagggctcgtggtaggcatgtgagttgaattgctcatctgatttgatgatggactgcttagagatttggaagaagtgaatgtacactgtgacattaatttctgttttgattgctgaatataattgatcagaagacaagaagtgacatgaattagacctgaaaggaaaattattcattcatggttttgatgggataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="9997" stop="61120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10297" g_stop="10492" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10493" i_stop="10567" i_length="75">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10568" g_stop="10776" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="405" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10777" i_stop="12754" i_length="1978">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.721" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12755" g_stop="12879" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="530" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12880" i_stop="12979" i_length="100">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12980" g_stop="13031" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="582" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13032" i_stop="13118" i_length="87">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13119" g_stop="13205" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="669" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13206" i_stop="14696" i_length="1491">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14697" g_stop="14819" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="792" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14820" i_stop="15459" i_length="640">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.641" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15460" g_stop="16047" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="1362" r_length="570" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-U316262" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>1380</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10297" e_stop="10492"/>
          <exon e_start="10568" e_stop="10776"/>
          <exon e_start="12755" e_stop="12879"/>
          <exon e_start="12980" e_stop="13031"/>
          <exon e_start="13119" e_stop="13205"/>
          <exon e_start="14697" e_stop="14819"/>
          <exon e_start="15460" e_stop="16047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACAAAGCAATATCAGAATTTCAAGTTCCAACAGCCATATCAACAGGTTATGTATTACTGCTCATTACTGCTAAAAGACAACATATGGCCTTGGAATGAAGAACTTGAAGTGCTTCCACATCTTAAAGTTGATGATCTGGTTAAGTTCTATCCGCTTTTGATGGCTAGGTCCTTTATGGAGTGCTATGTAGCAGGTTACTTTTCTCAACAGCCATTTAAGTTGTTTCATTTTACATCTATTAACTTGTGAAATCCACTGCCTTTCTCAGGAAATGTTGAACAAGCTGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAGGTAAACCTTAAGTTGATGGAATGTGCATGTAATTGACAGCAAGTTTCTCTCTTCTTCTCTCTTGTTTTTTTCTTAGAAAAAATTGGTAAAAATGTTATCTTAAATGAGTTCCTTGGAGGTCCAATACTTGCACAAAATTAATATGGGTGCTTAGAAGCAAAAGTTTTCCATTTTATTGGATGAAACATCATCCAAAACCAAAAGTAGGTGCTGGATACCCCAAATCAAAAACTCTTGCCTTGCAACTATTTAGCACCACCAGAACTTGTAGAGTGCTTGATTTTATATGGATTTCTGTCATACTTAATGTGTTCTAGTGCCCTCATTATTGGTTCTGCTTTGTTATGTTGCAATTCCTGTTACTTCTTGCCACTTTTGATAAGGTAAATAGTTTCATCAATCTGGATTCGCTTATATAAGAAGGAAGTATTACCAAAAACTGGGATACTACAAAAACATGGTTCTTTACAAAGCACACAAAGTTCTATACAGATGGGAACCTCATTGATGAACCAAAAGGGGAAGCAGAAACAAGAGGTTGTTCCTCATATGCACAATGTCCATGTGGAGAGAGAGGAACAAAAGATGTTCTCATGGCACCCAAAATCTCATCCCTACCCTTAAAGCAAGTTTATTGATCACTCTTTTTGGTTGGGTTAAAAGACCAGATCTGCTTGATGGACTTCCCAACTTTCCAAGAACTTCAACACACAAAAACCTCTCTCAGTGAGCTTGGCATGGCCCAAGCGAGTCCAAAAAGTGAGAAGAACATGTTCCATAGGTCTGTTGCAAATGTGCGATTAGGAAACAGGTGATTGATAGATTCCGAGATGCATAAGCACATGTAACATCTGTTTAACCATTTGGAGTTCCTCCTTATGAGGTTATCCTGTGTCAAGCAATAATCTTTTAGAGTAATTGAACTGAAACAAATAACTTTATGTGGCAACCTAGTTCTCCATTAATATAAGAATTTTGGGTTTAGAACAAGCAATTAAAATTTGTGTGGCCATAAATCATCTCATTAAGGGTAAATGGAAAGTTTAAAGTTCAACTATTTCTAAATATGGAAAGGCGTATTTCTTTCTAGGACAAAGGGAGTAGTATTTATTCGTTTGTAGTAATGACATATCAAGTTGGAATTGGCAACTCATCAACTTTGGTGTTGACCCTTCTTTGTAGTGGGTATCCTATTGAGTACCCATATTACCTTTTATTTGTGAATTGGATTGCTCTTCTAGAGTCATGTAATTTTCCCACATTCTTGAATATTAATCTCCATTGAGGGGCCTTTTCCATTTTTCAACATTTAGGTCTCCTTGATTTTGAAGATCCGCTGTCTTGCTATCATCTCATGTTCCTTAATTCTTTCTTCCTTCTGGAAAAAATCCTTTATGCAAAGTCGTTCTAACTAAGGCTACCTTATAAGTCAATCTTGTGAGAATAATATGCCTATCGTGATGGCAGTTTTCTTGAGAGCCTTTTTGAATTTGATCATGAACTTCTAATCAAATAGTGTCTAATCCTTTGGATGACTTGAATTGCTTGTTTTAAGGCTTAGCGTAAGTTGAATAATCAGTTTCTTTTTCCATGACCCGTAAATTCCGTTTGTACTGCTGTCATGAGTAGTGAGAGTCCTAGATCTTCTAGTTCTATAACTTCACTCAACTTCTTAATGATCATAGTTATCTGTAGCAAATACTGCTTTAATCTCGAGAAGATATTTCTTCAAATATTGGATGTCTTTCAGAGATTTATTACTGGTCATGGAGGATATTGTTTTTCTCATTTGTTGGAACAAGAACCTTGACTACAGATATGCCAGTAAAGATTTTACCAATCAATCTTCAAGATCTTTTGACATATGATTGTTCTTTTCTAAACGGAAAACAAACTTGTCTAATGCATTTGTAATGAATTGTGTCATCAATCTTTTCCTGGTTCTTTGCTTCTCTAACAAGTTTGCTTAAGTTTCCAGGTGCATCAGGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCATGCAGAGGTATGTAGTCTGTCTTTTACTGAACACTGTTCGGCAAGTTGGCTATTCCTCCTTAACAAGTTTTGTTTTCACTTAAAGTGGACTAACATTCTCTTTCTAGGAGCGACTCTGGTGTTCACGGGGTGCAGTTTATCGTTCAGTCAACTGCAAAGGTAAAGATATTTTATCATAGGTACTGTGGAAGGAAATAAGATCGGGCATTTATAGATTATGACAAATCTACTGGTTGAGTTTGGCAGGATCCCAAATACATTGACACAAGAGTGGAGTTATTTATGAAGATGTTTGAGAGCAAGCTTTATGAGATGACTAGTGATGAATTCAAGGTGAGCTTAATAACACTTGTGCTTCTTTTTCTAGCGATGAAAGGAACTTGTAGCTACTAAATTAGTCTCAATATTGTCAGGAAGGTTCAGTAAGTTTTGGGGTTTAATCTTGGGACTTGGCTCTTAAGGATAATCCTAATCCACAAAGTTGACAGCTTCATTTCTTATCAGGCCGTAACGGATTATTATTATGTACTTTTGATAACTCAAATTATTATCACTGGCGAAAGGGAAAATAACCATTGACATAGCACAAAGATGGTATAACCATACTATGTGGATTTTCATCAGCCCTTCAAAAAAACCATTCAACTGTATATAATATGGAATAGAACTAAAAGGAGCTCTTGCTCTCCAAACTGGAGTGCTATGTTGCACTTTCTTCTGGTTTGAGAAGGAAATCTTCAGAACGGAGTTTAAATCCCTTTAAAGAGTTTTTGTTTGTTCCCTATAAATCAGCCAAATGATGCATCCAGGCGAGACTTTCAACGGCTCTTTTTCCGTTGGGACCTTTGCGATCTCAAACTAGCCTGTGCTTCCTCTTTACCCAAAACTAGTCTGTGCTCCTCATGGACGATTGAAATAGTCCATGTCTTCTCTATTTGCCGTACAAAAACATCAACTAACTCCTCACATTGTGGGCATGAGTATAGGCACTCCTAGCTCACATAATCAGAGGGTGCCACCTAGGGATGGCAATGCGGCGGATGCAGGGTGGGGTGGGTTCAAGACTATGTGGGGCGGCTTGAAGTGGTTTCTTTTAAAAACTAATGTGGTGCAGGGCGGATTGTGGGTATATGTAATTTTATGTGAGTTCAAACTTAATTTTAAAACTTTTTACATGTTATAAGAGTGATAAAACATTATTTATTTAGATAATTTCTTTAAATTTTACATGTTTCCCAATTGACCTCCAAAAAATAAATTCTTAAGTTACTATCCTATTTAATTAATACAACTTAATGGAAAAATGAATTTGTTTTTATGAATTTTATTTTTTGTATCAAACTTAACTATAAGAAGAAAATATTAATTTAATTATGTGGGGTGGGTTTCATGCGCGTCTGGTCTATGCGGGGCGGGTTGAAAATGAAAAAAATTGTCATGTAGGGTGGGGCGGGAAGGATTTTAAACTTTGTGGGTTAAGCTCAACCCACCCCGCCCCCATTGCCATCCCTTGCGCCACCCTTTTAGGAGTCTTTGACTTCCATGTGGCTCCATGTTTTGACTCATCATAATTGCTTACATTATCACCGTTTTGTTTCGTGAAAAGCTTCATTGTTGTTGCCCCCCCCCCCCCCCCCCACTCTATAATAAAGCACTCCGGATTGTATACTTAGCTAGCTACTGTTGCTTATTAATTAATAGGATGTAGGTTTTGTCAAAGTTTTCGTGTCTGCAGTACATGGTGGCTTACTGTTATCCGTCTATACTTTGATAACTTTCCAGTATAGCTTTCTGGTCCCTAACTTTTATCCATTTATGATACAGAATAATGTCAATGCACTTATTGATATGAAGCTTGAGAAACACAAGAATTTACGGGAGGAATCTCGGTTTTACTGGAGGGAGATCTCAGATGGGACCCTCAAGTTTGATAGACGAGACCGTGAGGTATGAAAATTGCTACACTCATGTAAAGAATCACTTCCATTTCATGAGCATTTGTCAGAGTTAATGACTCTACTTCTTTATGTTTTGTTTTTGCACAAAGTGAGACTAAACTGATGTAAAAGGAATAGGTCAAATGTATGACATCACCCTATTATGTAGAGTTCTTCTGTAGGTTTTTACCTTTTTGACCACATAATAATAACAACATACATAGTGTAATCCCACATGTGGGGTTTGGGGAGAGTACGGTGTATACAAACCTTATCCCTACCTTGGGAGGTAGTGAGGTTGTTTGCTATAGACCCTCGGCTGAAGGAAAAGCATATCAAAATGTACTAGTGCTATTGTTATTTCGGTAGAGTCCTTTTTTTTTAATTCTAGAAATGTATGCATTTTGAGTCACTTTTGACTGTTGTTAGTGGCTCACGCCGAAAACCTATAATTTATTCCGGTAATTGATGTCATTTACAGTAATTTAAGTATGGATCAGTCTGTGGCTTGTGTCTGGTCAGCAGCCTATCTTACTGTCCTTTTCGTTTCCCGTCTGGTTTTTCATGACTGCTGAAAGAAATTCAAAACATTTCCACAATCATAGGGGGAAAATGTATCTAATCAGTTGTCAATGATATTGATGAAACAGATTGTCGCGTTAAAGCAACTGACTCAAAAGGAGCTGACAGATTTCTTCGATGAATATATTAAAGTCGGTGTTCCTCGGAAGAAGGCCTTAAGTGTCAGAGTCTATGGAAGCTCACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCAAGATACCTCTCTCGTATTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTAGGCGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTTGATGGGATAAATAAACTACAAT</genome_strand>
        <mrna_strand>GTGACAAAGCAATATCAGAATTTCAAGTTCCAACAGCCATATCAACAGGTTATGTATTACTGCTCATTACTGCTAAAAGACAACATATGGCCTTGGAATGAAGAACTTGAAGTGCTTCCACATCTTAAAGTTGATGATCTGGTTAAGTTCTATCCGCTTTTGATGGCTAGGTCCTTTATGGAGTGCTATGTAGCAG...........................................................................GAAATGTTGAACAAGCTGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATCAGGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCATGCAGAG....................................................................................................GAGCGACTCTGGTGTTCACGGGGTGCAGTTTATCGTTCAGTCAACTGCAAAG.......................................................................................GATCCCAAATACATTGACACAAGAGTGGAGTTATTTATGAAGATGTTTGAGAGCAAGCTTTATGAGATGACTAGTGATGAATTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATGTCAATGCACTTATTGATATGAAGCTTGAGAAACACAAGAATTTACGGGAGGAATCTCGGTTTTACTGGAGGGAGATCTCAGATGGGACCCTCAAGTTTGATAGACGAGACCGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCGCGTTAAAGCAACTGACTCAAAAGGAGCTGACAGATTTCTTCGATGAATATATTAAAGTCGGTGTTCCTCGGAAGAAGGCCTTAAGTGTCAGAGTCTATGGAAGCTCACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTAGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGTATAGCAGCTCAAGAAG-CCCCCGATGCAGTTGATATGTTGCGTTAGCGAGTTCATTACAGAAGCAGTTGATCTGCAAGATA-C-CTCTC----TC------GT--A-T--TCAGTTGTACGAGGGCTCGTGGTAGGCATGTGAGTTGAATTGCTCATCTGATTTGATGATGGACTGCTTAGAGATTTGGAAGAAGTGAATGTACACTGTGACATTAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTTTTGATGGGATAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331859" ref_strand="+" ref_description="SGN-U331859        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | peptidase M16 family protein / insulinase family protein, contains Pfam domain, PF05193: Peptidase M16 inactive domain; similar to insulin-degrading enzyme (Insulysin, Insulinase, Insulin protease) (Mouse) SWISS-PROT:Q9JHR7 | chr2:17436372-17443188 REVERSE | Aliases: T11A7.11, T11A7_11(evalue: 1e-59, score=225) genbank/nr: gi|15485612|emb|CAC67408.1| insulin degrading enzyme [Lycopersicon esculentum](evalue: 8e-61, score=235)">
      <seq>atcaatattacggaaatttctctacaagtgcaggttttattgatgcaagttgagattttgaacttaccctttactttcatttgttgtatttcggtgattcttgaaatacccatttgggattttggacttaaatcgtgttttttgagctattgagatttggggttgttaaactttgcgagaaaatggctgtgggcaaagcagatgaacctgtagagatctttaaggctcgttctgataagagggagtacagaagaatagttcttcagaactctcttgaagttctactaatcactgatcctgaaacagacaagtgtgctgcttctatggaggtgtcagtggggtattacagtgatcctaagggtcttgaaggccttgctcattttcttgaacatatgctgttttatgcaagtgagaagtatcctgtggagaatagttactcaaaatacatcacccagcacggaggttccaccaatgcctttacatcttctgagcgcaccaacttttacttcgatatcaatgcagattgttttgaagaagcattggacagatttgcgcagttttttgtcaaaccattgatgtcacctgatgccacaacaagggaaataaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="16878" stop="23730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17178" g_stop="17488" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17489" i_stop="17586" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17587" g_stop="17662" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="387" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17663" i_stop="18394" i_length="732">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18395" g_stop="18462" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="455" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18463" i_stop="23203" i_length="4741">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23204" g_stop="23295" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="547" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23296" i_stop="23367" i_length="72">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23368" g_stop="23430" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="610" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-U331859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17178" e_stop="17488"/>
          <exon e_start="17587" e_stop="17662"/>
          <exon e_start="18395" e_stop="18462"/>
          <exon e_start="23204" e_stop="23295"/>
          <exon e_start="23368" e_stop="23430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATATTACGGAAATTTCTCTACAAGTGCAGGTTTTATTGATGCAAGTTGAGATTTTGAACTTACCCTTTACTTTCATTTGTTGTATTTCGGTGATTCTTGAAATACCCATTTGGGATTTTGGACTTAAATCGTGTTTTTTGAGCTATTGAGATTTGGGGTTGTTAAACTTTGCGAGAAAATGGCTGTGGGCAAAGCAGATGAACCTGTAGAGATCTTTAAGGCTCGTTCTGATAAGAGGGAGTACAGAAGAATAGTTCTTCAGAACTCTCTTGAAGTTCTACTAATCACTGATCCTGAAACAGACAAGGTTAGTTGTTTTTGTGATTTTTTTTAATTTCAGAAATTTTATGAATTTTATTGAGTTGGGTTGTTTTACAAATGTATTTTTGTATGTTGTTGGATCAGTGTGCTGCTTCTATGGAGGTGTCAGTGGGGTATTACAGTGATCCTAAGGGTCTTGAAGGCCTTGCTCATTTTCTTGGTAAGTAAGCTAGTGCATGACTCTAGGTCTTGAAGCAAGGACTAAGCTGCTTTTTTGGTTTCTGTTAATGATTGTGGTGTCCGGGCCAGCTTGCGCGTAACCGTATACCTGTTACCTCCCACCAGCTCAACTATTGGTGTTTATCTTGATGTAACTGGTAAAGTTGTTCTCACGTGGCCAAAAGGTCATGAGTTCAAGCGGTGGAAAGTGGAAACAACCTCTTGCAGAAATGCAGGGTAATACTGCGTAGAATAGACCCTTGTGGTCCAGCCCTTCACTAGACCTTGCATGAGCTTAGTGTACCCGGATCCCCTTTTTAAAAAAAATTCTACTGTTTCGTTTCTCCAATATTTTCACTATTGTATCTACTGTATTTCCTTTCCTACTGATTTTGATATGCTTGTTTTGAGATGAGGTTTTAGAAACAACCTCTCTACCTTCTCTAGACCCCACCTGAGTGACTACAGTGGGTATGATGTTTCCTGTAGCTTTGATTCTATGCACCAGTATTCTGCCAACATGGAAGGTGGTGAATCTTGGAGGGGTGGGAATTTTAACTTCTCTTAATGTGCAGCTGATGTGTTTTTGGTTAATTTCATGATCTTATTTCTTTGGTTTTTGTGAGTTAATTGCACCCTTTGTAAGTTATTCCATTCTACTGTATGCTACTTTAGTTTCACTTTCTTCCATGAGGCAAAAGTGCACACTGATTCATAATGTTTTAAACTGCAGAACATATGCTGTTTTATGCAAGTGAGAAGTATCCTGTGGAGAATAGTTACTCAAAATACATCACCCAGGTATCTTCTTTTATCCTATTAACAATTATGATTTACTTTTCCCTACTCATGTGAAATAGCTTCCCTTCTTCCCACCGTTTGCAATCTATCTTCTCTTCAGGACTTTTTGAGAGCTGATTATTGTCTGTGTTCTTATTTTTTATGTTGGGATACAACTTTGATCGTTTTTAGGGGTTCTTCTATTGAGCTTCGATGGTGATAAATGGTGGTAGTTTCACTATCTGCATATTCTTCAGTCGTTAACTTGCTAATTCAAGGTGACTTCTCCTCCCCGAAATTTGAGGGGAAGGTTAGAATGTGTTGAGAAGTCATCACCAACTTAATATCCAAGACACGTCGAAGATGAATCTAAAATATGCAGGAGTTGTAAAGAAATGAAGATCTCTAGAATGAGTGTTCTAGAGAGAGAAGTCTAGAAATATTCTAGAAAGGGAAGTTCTAGAAATAAGTAGTTGGGGGAACAATTTAGAATAGAGAAGAAATACCTTTAGTTAGATTCTTGCATCACCAGTTCACCACCTAAAACATAGACGTGGTTCATTTGAGATGTGTGTGTGCTCAAGTAAATATTGAGTGCTCAAGCAAGTAAGCAAGCAAGAAGAGAGTGATCGGGAGAAAAATAAGAGAACAAAGAGAGTTGCTAGAGTGTGAGGGCAAGAAAAATTGAGTGTAAGTATTATAAGATCGAAGCGGGTCTTTACCTTGCAATAATAAAATTCAAGTTATGAATAATGGTGCAAAATAATTATTAACAGAATGTTAATATGAAATATCGTCTCACATCTGAAGCAAGTATTGTGTGTATTCAATAAACTATTTACAGGAATTTGTGGTGTAACTCACTTCACCTTCCCTTGTCAAAAAATAATAAATTGTGGCGAAAGTCATGGTAAATCCATGGCTGCAAAATAAATTGTGGCGAAAGTCACTGGCCTGATGCACTGCTGCAATCTCTTCTCTTATTTTTCATGTAGAAGCTGAGCCCCAATAACTGAAGACATTGGGAATGCATAGACAACTTGCGGGCTAGGAGGTTATAGATGATTTATGCAAATACACATAATATATTCTTAAGATGTGGGACAATATATCCAATCTGACATTCCAACATCAAGCAAGCAACTATACTCTAGTACCAAATCAGTTATGATCGGCCTTATGAACCTCTACATTATTCCTCTCTGTTCAGATCTACTATATTCCTATACAGTGTTTTGGAAGGCGAGAGGCGACAAAAAGCGATGAGGGCCCATTTCACTGAGGTGAGAAGTGATGTGCTTGTTTTTCGAAGTGAAGCGTCAATTAATACAAAAAGATAAGTATTAATTTTTCATCTATAATTAACCAAAAACTCAATAGCAATAGCATATTAGGCAAAATTATTTAAGTTATTATGCAACTAAATCCGAATAAATGCTAAAAGAAAAAACTGAGCAAAAATGCAGAAGAAGAGGATAAAATCATAAAACAGAGGATGAAAGAAGAAAGAAGTTGACTGATTTTAGTTGCTGGAAAGCAGAGGAGAAAGAAGAAAGGAAGAAGTACCTGAACTCTAGCTTTGACTTGCCTCATCTAAACGAAAAACAGAGATTGCTGCTGGACAGAGAAAGAAGGAGAGAGAAGTTGCGCAGGGTAGTCCGAGTCTGACCAAAAAAACCTAGCTCTCAAATTGTAATTAAAATTGAAGCTTCGCCTCACAAATGCTTTTCTGATCACTTCTTGCCTCTAGGAAAAAGGCACTGATTGTATGCTTCACCTCTCCTCATGCTTAAGCGCTAAGCCGAGCGCCTTTCACAATATTGTGCCAACACGAAATAGTTTTCCTTATTCTAACAAATTATAAGGCATGTAATCTTTGCATGTACATAATATACCATTGCCTCAACCTAAATTCAGAATACTGAACACTATGTACTTCATTTTCCTAGTAGTAATGACACAACCATATCAATAGCTAGGTAATCAATGAACAAAACACACTTCTTATTGGAGAATCGGCAATTCAAAGTTCTACTATAAGGGATCAAATTAGAATCTCTAAGATCTTGGCAATGATCCAATCAAATCAATATTAACTTGTTCTTGATTATGTTTTATGATAAACTATGTTTTTGCAAATGATGTAGTTTTGATTAATGAGACACGCAACGGAGTTAACTCTAAGTTAGACGTTTGGAGACAGACCCTTGACTTTAATCGCTTGAGGTTGAGCATGATCAAGATGCAGAAGTTAATAGTCATTTATTCCTTCATTGCAAAGTAGCTACAAGCTTATGGAACATGATTCTTGGTCGTCTTGGTGTATGCTGGGTAATTCCAAAGTCCACTAAGGACTCAACAGCTGAAAGGAGATAGGAAGAAGGGAGTCTAACTGAAGATTGGTGGGAGTTAATCCCGGCCTGCATCTGGTGGTCCCTATGGAAAGAAAGGAATGGAAGATGCTTTGAGGATAAGAGGAACAACATCCAGAAAATTAAAATGAATAGTCTTAGTCTTTTGTATTTTTGGTGTAAACAAGATATGATGGGGGATATAGAACTTTATGCAGACTTTATAGGTAATTTGTAATCTCCCGTAGGGTAGTTTGATATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACCGTTACCTTTATCTCAAAAAAAAAGAAAAGATTGAGCTTGATCAAGACTGAATACTTGGTGCAAGTTCAGTGACGTGACACATGAGGCTGATGCGAAAGCGAGACTTAATTCACAGATCATCCAAAAGAGAGGTAGTTTCAAGCATCTTGGGTCAATTATCGAGGGAAATGGAGAGTTCGACAAGGATGTCACTCACCATGTTGGTGCTAGGTAAATGAAATGGAGGCTCACATCTGGAGTCTTGTGCGATAAGATGGTGTCACATAGACTTAAAGGCAAGTTGTACAGTTTGGTTGTTAGACCACTTATGTTGTATTGGTGCAGAGTTTTGGTCAATCGAGAATTCTCGCATTCAGAAGATGAAAGTGGCGGAGATGATGATTTTGCAATGAATGTGTCGATATACCAGGAGAGATGAGTTAGAAATAAGGATATCCGAGACAAGTTGGGGGTGACTTGTGGGAAGCGAGGTTGAGATGGTTCGGGTATGTCACTAGGAGATGCATGGATGTCCCCGTGCAGAGGTGTAAGAGGTTGTTTATGGATGGATTCAGGAGAGGGAGAGGGAGAGGTACATCAAAGAAGTACTAGAAGAGGTAATTCGATAGGATATGACATAGTTGCAGCTTACTGAAGACATGACCTTAGATAGAAAAGTGTGGAGGACACAAATTAGGGTAAAGATTAGTAGGTAGGAGTGCGTCCATGATGGTAGGTCGGAGTGCTTTGTCTTGTTGCCCTTACTAGTAGTCATAGGACTATTCTTGTAGTTTTTTGTTCTTCAATTTCTATGACTATCTATTTGTGTAGTTTGTTTATAAGATTATTTTGTTGTAGTACTATTCTGGTCCTTTCTGTTGTTTTTGTTACTATCTATTGTCAATGGTGTTTTCATTATGTCTTTTCCTAGATTGTTTTTGCCTTGAGGCAGGGGTTTATCGTAAACAACCTCTCTACCTCATCTCCTAGGTAGAGGTTAGGTTTGTTATACCCTCCCCAGATCCCACTGTGTGGGACTACACTGGGTATGGTGTTGTTGATATACTAGGTTACCTATAAAAAATGTACTACAATACTGGGTAAAAATCAAATAGGAAATCACCAATGGCCAAAGGGGTAGCAGTTGACATCAAATACATGTTGTATGCAACTGTGTTTTACTTCTTCTCTTTTGCTAATAGATGCACACAGTTTGTTGAGCATGTAAATTTATAATAATTATGGTGGTAGAAGAAGAAATTATCAAGTAATTGTTGGAGTATATTTGCGGCACTACCAACTTGGTCCTGAATGTGTTTCATTCGGACTGTAAGTTTCTAGTTATTTCTCCAGTATTCAATAAAATGTCAGTTATATGAAATCTTCACTATGATGTCCTAGCTTAATTTGGATTTTAAACCAGTGAGAAGAGGAGGTTATATTTTTTGAGGATAAGAGGAGGTTATATATTGATGAACTGCCTTTGTCCCATTTTACATTTTATATGAAATTCTCTGTTTTAGGTTGTCTTGGAAAAGATTAACAAATTGCTTCTGAAAACTACGTTTTCGTTTCTTTTTTAGCTTCACTCTCTTCGCACTAGTCCTTGTTTATCTTTAAATGTTATTTGGCAATTGTAACTCTACGAATGCCTAGCAATGAGGTAAAATAGTTGTTGTGATGTAAAAATTGTTTGGACATTTGAAGAAGATGAACATGAGGTCTAAACATATGAGTTGTCTCTTAGATATGAAGACATCCTTTGTCATAATTCAATAGGCCAAATAAATAGTCGACCGCTAAAGTTTCCACACCACTTACCACCGCCCAAGAGAACCACCATGGCCAATTGGATGTGACTGGTTTCTTTGTATTCATGACAATGGGGGAGGGTGTAGGAAAATGAGTGTAGCTTGGTGTTAAGCAAGTGTTTTTGCTTTTGTTGTCAGCAAAAACAATCAACAAACAATTCTTTAAAAAAGAAGAAGAAAGAATAGCTACTATAGCTTTTACATCTAAATGAATGAAGTTTTGTATGCATTTCCCTTGAGGTAACTGTCTTATAGAGTTTGATTTTCTTCTCATTCTTGATTATTGATTCAGCACGGAGGTTCCACCAATGCCTTTACATCTTCTGAGCGCACCAACTTTTACTTCGATATCAATGCAGATTGTTTTGAAGAAGCATTGGACAGGTATGGAATTAATTCTCCTTATAATCTTTGAAAGAGTATCTATCAAATGTCTTATGGTGTTTCATTATATAGATTTGCGCAGTTTTTTGTCAAACCATTGATGTCACCTGATGCCACAACAAGGGAAATAAAAGC</genome_strand>
        <mrna_strand>ATCAATATTACGGAAATTTCTCTACAAGTGCAGGTTTTATTGATGCAAGTTGAGATTTTGAACTTACCCTTTACTTTCATTTGTTGTATTTCGGTGATTCTTGAAATACCCATTTGGGATTTTGGACTTAAATCGTGTTTTTTGAGCTATTGAGATTTGGGGTTGTTAAACTTTGCGAGAAAATGGCTGTGGGCAAAGCAGATGAACCTGTAGAGATCTTTAAGGCTCGTTCTGATAAGAGGGAGTACAGAAGAATAGTTCTTCAGAACTCTCTTGAAGTTCTACTAATCACTGATCCTGAAACAGACAAG..................................................................................................TGTGCTGCTTCTATGGAGGTGTCAGTGGGGTATTACAGTGATCCTAAGGGTCTTGAAGGCCTTGCTCATTTTCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATATGCTGTTTTATGCAAGTGAGAAGTATCCTGTGGAGAATAGTTACTCAAAATACATCACCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGAGGTTCCACCAATGCCTTTACATCTTCTGAGCGCACCAACTTTTACTTCGATATCAATGCAGATTGTTTTGAAGAAGCATTGGACAG........................................................................ATTTGCGCAGTTTTTTGTCAAACCATTGATGTCACCTGATGCCACAACAAGGGAAATAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330812" ref_strand="+" ref_description="SGN-U330812        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | peptidase M16 family protein / insulinase family protein, contains Pfam domain, PF05193: Peptidase M16 inactive domain; similar to insulin-degrading enzyme (Insulysin, Insulinase, Insulin protease) (Mouse) SWISS-PROT:Q9JHR7 | chr2:17436372-17443188 REVERSE | Aliases: T11A7.11, T11A7_11(evalue: 3e-83, score=178) genbank/nr: gi|15485612|emb|CAC67408.1| insulin degrading enzyme [Lycopersicon esculentum](evalue: 2e-90, score=196)">
      <seq>aaggcaggagcttctcaaattttataaagaaaattattcagccaacttaatgcatttggttgtttatgcaaaagattgccttgataaaactcagacactggtacagggcatattccaagaagttccaaataccaatagaagttactcccctgttactgatcagccttgcaaatcagaacatcttcagattctagtcagagctgttccaataaaacaaggtcatagtttgaggcttgagtggccaataattccagacttagctcattacaaggaagggccttcactctatttgagtcacttgattggacatgaaggagaaggatccttgttttatgtcttaaagaagttaggttgggcaacaagcttatcggctggagagtcaggcggcggtcatcacttctcctttttttgaagtttatattagtctgactgatgctgggcatgaccattttgaggatgttgtggcactggtcttcaaatatattcaccttctgcaacaagctggtgcccgcaaatggatatttgatgagctttctgctatatctgaaacgaatttccattatcaagacaagagttctcccatcggttatgtggtatatgttgcgtcgaacatgcagctttacccgccaatagattggttggttgggtcatctttaccttcaaagttcagtccagacattattgaagcagttctaactgatctcacaccacaaaatgtcaaaatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="24832" stop="37203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25132" g_stop="25205" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25206" i_stop="25289" i_length="84">
            <donor d_prob="0.284" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25290" g_stop="25402" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="187" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25403" i_stop="26180" i_length="778">
            <donor d_prob="0.797" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26181" g_stop="26343" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="350" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26344" i_stop="26804" i_length="461">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26805" g_stop="26897" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="444" r_length="94" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26898" i_stop="27077" i_length="180">
            <donor d_prob="0.727" d_score="0.96"/>
            <acceptor a_prob="0.664" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27078" g_stop="27163" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="530" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27164" i_stop="32339" i_length="5176">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32340" g_stop="32426" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="617" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32427" i_stop="36800" i_length="4374">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36801" g_stop="36904" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="721" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-U330812" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25132" e_stop="25205"/>
          <exon e_start="25290" e_stop="25402"/>
          <exon e_start="26181" e_stop="26343"/>
          <exon e_start="26805" e_stop="26897"/>
          <exon e_start="27078" e_stop="27163"/>
          <exon e_start="32340" e_stop="32426"/>
          <exon e_start="36801" e_stop="36904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAGGAGCTTCTCAAATTTTATAAAGAAAATTATTCAGCCAACTTAATGCATTTGGTTGTTTATGCAAAAGGTAGCTGGTGATTTCCCTTTTCTTCCCTATAAATTATTACTGTGGAAAAGCATCTATGCTAATTTTCTCTTTTGAAACACTCAGATTGCCTTGATAAAACTCAGACACTGGTACAGGGCATATTCCAAGAAGTTCCAAATACCAATAGAAGTTACTCCCCTGTTACTGATCAGCCTTGCAAATCAGAACATCTTCAGGTGCTCAAATAGGTGTAGAGGTCATAAATTTGTTACAAAAGTTAAAAAATATAAGGGCTATGTTCTAGTGAATCTCTTTTCTCTTGCCCCTTTTGTGTTGGCTGGATTGGAAGGTGCTTTTTTAGTGGTAGAAAGATTAGCGGCAAGACAAGGAAGGGAGAACGTGTTTATGATATGGGGTCTTATGATTGATAATTTTTACTATGCTTATGATTTATCAGATAGATTTTGGAATTTGTGAGAAATGAATGGTTTTTCCTATACACGCATTTGATTTTATCTGCACCGTGGTTTCAGAGGAGAGAGCTAAACTTCTGATTGTTTCCTACCACCACTTATCATCCTTCGCGATCTAGCTTAATTGGCTTTGGTAGACAACACATGAAAGAAACTGTGAGCCCTTTCCTTGTCTCCATGTGCTTGTGATGCAATAAGATGTCACCTAAGTTTAACAAGTCACTCAATTATCATATATTATATACTCGGCACTGAGTTGACATATCAGATATATTCTGTACGTTTTTTGATAGACGTTCCTGCTGGATTATTCCAAGACCTGCTACTCCTTAATCTCATAGAGAAGTCTTATTGATGAAGCGTGAATTATGCCAAATTTTCTAGGAGTGCGTTGAAACTTCCCAGTTTCATTTTTCATTTTGGGTAGGGGTGTCAGAAATGCGCTAGTAATCTACGTTCTTCTCTCTTCTATTGCATTATCTTCATTATTACAAAGACATGGTTGTCCTCTGCCTATGATTCTTTACTCTTTGTTACACAGATTCTAGTCAGAGCTGTTCCAATAAAACAAGGTCATAGTTTGAGGCTTGAGTGGCCAATAATTCCAGACTTAGCTCATTACAAGGAAGGGCCTTCACTCTATTTGAGTCACTTGATTGGACATGAAGGAGAAGGATCCTTGTTTTATGTCTTAAAGAAGTTAGGTGAGTTCTCAACATAATTGTTAGAAATTCTGATTCTATTTCACCAGAGATTTGTTATGAGGCACTTATGGAGCCCTTGAGTTCTATTGCAATAATATGCGAAAATAGTGAAAACACACAAGTGTGTTGCTTACAAGCAGATCTTTTGAGTGGTTGAGATATTTTTTCATTAATTCTATCCAAAGTAACCTTGCAGGAGGCTGCGTATAGTATGCAATCAACAATAACTATTGCTCGAAAGAACGAAAATGTTTTTTATCTACCATGATAAGTAGCGAGAGGATTGATGTAATGTTAATTACATCTGATAATCCAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTATTCTGGAAGTGGGGCACACGTTGAAGTTAGAATTCCTTGTTAGTTGTCAGGACTCGACTCTCCATACTGTTTCTAAGTACTCAGTGCTGTTTATCTCTGCAAATCATTGCAGGTTGGGCAACAAGCTTATCGGCTGGAGAGTCAGGCGGCGGTCATCACTTCTCC-TTTTTTGAAGTTTATATTAGTCTGACTGATGCTGGGCATGGTTAGTTTCCTCATCTCCACCCCCCCCCCCCCCCAAAAAAAAAAAAAAAACCCCCCGCACTCCCTTATGTGGAGAGTAAATTAATGGAAATGTGTTTGTCGTGACCCTCCATTTTTTCTGGACTTTACCTTCTGTCGGGAAGTCTACTACACTGACCATCATGTCTCAATAATATTTCAGACCATTTTGAGGATGTTGTGGCACTGGTCTTCAAATATATTCACCTTCTGCAACAAGCTGGTGCCCGCAAATGGATATTTGATGAGGTTGTTGCACTTAATTTTGTATCAAACACAAAAGTGTTCATTGTTGTTTACAGCAGAACAATAAATCTTCAAGGTTAGAGGAAGATTTATTGATGAAACATAGGAAACATACATAGCAAATTAAAATTTCCTCAGCGATCTCTGCCTTTTCCTTTAATTCAATCCTCATATGTTCCTCAAAATTGGCTTCACTTTAAAGTGCATCCAGAAGTAAATGTGTTGGGGAGAAGAATCACAGAGTTACTTGTCATGTCACAATTAGCTTTTGTTCCCAATTTATAAATCTAAAGAGAGCATGATAACACACAGAATCTACAGAAGGAGAGGATTTACTTTATGTAGTAGGTGTTAGTTCTGTAAGATTCTACTGAATCTGTAAGACCTCTCTTGTTTGAAGTTTATACGGGCATGTTATCTGAAATATATGGAGCTAAGTGGGTGATACCCGGGAATCTGCAGCAAGCTTGATCAGCTAGCCGGGACAGGGACCAAGGAAATTTAGAGACAGAATTGGAGAAAATACCTTAGTGTATGTTGGGCCGTTCAAATAGAAAAAACTCAGATATTTTGAGGGAAAAGGTGAACCCATATCATATGTAAAGCCTAGATAATGTCAAAATGTGTACTTCTGGTTCTTGTGTAGAGTGAACTCACCTATGTAAGTTTCTCATAGCCAATGTAGAGAATGGATGATGGTTGTCATAGATTGACAATTGTGCATAGTCAAATATTTATAAATCTTCATAGTAATGATGTGTTGGGACATCTTCTTCTGGGCACACACTCCCTAATTTCTCTTAAAAGGATAATTATTAAGTAATGACATGATATGTGACTAAATAGAGTGAAATGAATATATCATTTATAGTGTGGGAATGAAGCGTAATTATTATTGCTGTTTTTTGTGTGGTACGATACTGGGATGAATATTGTAATAGATTCCATTCTGGAAATTATGGACTCCTGTCACATCTAAAAAAAATCAAAATTCAGACTTTTGTGCATCCTCAGTACCTCCTTGGTGCTGTTTTGTGTATAGTAAAATTATCTAATGTTCATGTAAAACTTAATATATGAAGAATGTGTATGGTTTAAGTAGAACATGTACCAAGTGAGTACCCACAACTTATGCACTAAATTGCTTCTTGAAGACGTAGATTATGGGGGCTGTGAGTTGTCTGAACTTTCCCTATCAGTGCTCAATACTACTCCCAATATATATACGCATATATATACATACATACATATATATATATATACATACATACATACATATATGTATATATACATACATACATACATATATATGTGTATATATATACATATATATGTATGTATGTATGTATATATATATATCTATACACTCTGAACTGTCTTTGAAACTCATTTTTCATTTAGAAAACAAGGTTTCTCTTTACTCAATGAAAAATACATTCTGGGTTGATTTTTCTCAGAAAGTCTACTCCTTTTCTTCATGTAAAAATGAACATTTGGGAAATACATAGTTCCCTTACTCTTTCTCAAACTATTCTTTACTTCCTCAAAACTCAGTTTAAACAATAATATTTTGTTTAAAAGATTCTCTATAAGAATTCAATAGAAACTCAAGAATAGGGTTCATGCTGAAAAATAGACATGAACAATCTGGTCAATAATCACAATACACAATGTACAACAATTCAATAATTAAAATTAGGAATTCAATAATCCATAACTCAAGAACTTAGAACTCAATATCAACTCATCTGAATACTGAAATCTAGAATAGAATCCTAAGTTTTCGTTTACTAATTTGAACGTAGATGTAGGACGTGAGGAAGAACTAGTCCAACACTGTGATAGTCTTGCATACTGGGAAGAACAGTCTTTGGCAAAATAGATGAAATTTGAAGAACGTTTGAAACCCTAGTTTTCTCCTCTTGAATCCTTGCTCTAAGTTTTTGAAGTGTTAAAGAACGTAACAAAAAGTTTTAACACTGTTTAGACCCTTAATTAGGTGAAAAAGGGTCGTGTTTAGGCTTAGAAGGGGTGGGAAACCTCTCTTTAAAAACTGACAAAAACTGTCCACGGGACTATCTATGGTTTGTGGTTTGATCTAGATCCCATCCGTGGAATTGATATTGAATTTTTAAGGCTCAAAAGTCCATTTACAAGTCCAAACGACAACTAGTAGTAATTCTTACGGCCCGTCGGTTGGATCCGTAGGCTTTGGGTCCCAAAAGTTGACTCCCAACACTCTACTGATGACTTGATAGGACGAATCGTTGTTCAACCTATAGCCTGTTGGTTGGAGCCTTAGTTTGCAGACTCAGAAATCTCTGATATGACAGTCTTTGGTAAAACGATCATCACTTTTTACTCCAAACATGAAATGAGGCAAACTTGATGACATTGGAAATAAGACTCAAAGACCTTTAATTTGGTAGGTCATAGGCCACCTAATTCATTATGTACGGGGAGATATGATCGTTTGAAGATGACCTAAATAAATCTTATGTCAAAACTTATTCGGCAATGAAGCTTTAAGGGGTTCTTGTGACCCAAGTCATATTCAAAAATCATTCCTACACTAAAGAATTGACCTTAACACAGTAAAATTAAGAATCACTCAGTACAACCTTATACTCAAATGAAGAATGCTTCAAGTTTTGACTTATAAATTGTCGGGGTGTTACAGAGAGAAACTTAGCAAACTGGAAAAGTCAATACTTATCCTGGGGAAAGACTTGCTATGATCAAAAGTGTGCTGAATGCCTTACCAACATGCATGATGTCTGTTTTCCTGGCACCACCTGGTGTAATCAATAGAATAGAGGTAGTCAGAAAAACCTTCTTTTGGCAAGGAATAAAGATAAGAGGAAGTATCATCTTGTCAAATGGGAAGAAATGAACATAAGCAAGAAGATTGGGGGAGTGGGCATCAGAAACATGAAGTTTCTAAACCAAAGCCTTCTGATGAAGTGGTTATGGAAATTTGCATCTGCTAAGAACTCATTGCAGAAGGAAGTGATTGCTGCAAAATATGGAATGAGGGATCAGTGGATGACAACAGAGTTAGCCTCTCCATATGGGTCTAGTGTATGGAGATCTATCAGTGATCTATGGGATCTGGTGCTAGAAAGATCATACTGTAAGGTGGGAATTGGCAGAAAGGTGGCTTTTTGGATGGACAAATGGTGTGGACAATTTTCACTTAGCCAAAGGTTTCCTGACCTCTACAACCATATGTCAAATGCAACAAGCAACTGTAGCAGAATAATGGAATGATTAAGGGTGGAATTTGCACTTCAAGAGAAACTTAATGATTGGGAGATGTGTGGAGTAGCAGAGTTTTTTTTCACCCTAGCACAATTTAGTAACCTGTCTAAGGAAGAGGATTCACTGGTATGGAATGTGGGGAGCGAAGGGTATTTTACTGTTAACTCAGCATATGAAGATCTCAGCACAGTTGGCATTGAGGAAGTAGAATGGCCTTGGAAGATGATATGGAAAACTAAGATAGCCTATAAAGTAGACTATTTTACTTGGTTGTTAGCTAAGGAGGCAGTTTTGACATATGAGAACTTGAACAAGAGAGGTTTTCACCTGTGTTCCATCCAGGTGCTTTTTGTGTGAAGAGCAAGGGGAGACAGCCGACAATCTCTTCTTACACTGCAAGTGGACAAACCAGCTGTGGCAAATGTTCACCAATATGAGAGAGATCAAATGGGTGAATCAGGAAGCATCAAAGTGGTTTTGAAGTGCTGGAATAGGATTTGAAATGCAGGAAGAAAGGAGGAGAGATGTAATATTGTCCCATCATGTATATGGTGGACAGTATGGCTAGAGAAGAACCAGAGATGTTTTGAAGGAAAGCGGAGCAACAATACCAAGATTTCAGCTTAATTATTTAGCTCTGTATTATTTTTGGTGTAAAGAAGTAGTCTTAGATTGCTCAGAAGTAATCAACACAACTTGGTAGCTAAATACAACACTTTTGGAGGGGAACTACACTTTTGAGGAAGTATACCTGTGGATAAATATAGACTAACGGTTACTTTTATTTTAAAAAAGAAAGAGAAAAAGAGAGAGATAAGCAAAAAAAATCTGCTGAAAATGACAAACTCCTAAAGTCTAGAAAGTACAATGTAATCAAAATTCAAATAGAACTCCTACATATTAGATCTAACTAGTTGATATGGTGTAAATAGTTCCTTAGTTTCTTGTGTATTGATTTCTATTATTGTTTCTTGTTCCTTGAACTTCGACTATTATATTATTTTGTTGTAGTTACTGTCTTGTTACTAGATTTTGTTGTAGTTACTATCTGTTATTTCTTGTACTGCTATTATTTATTTTTCTCGACTGCTTTGGACTATATTCGTGGGTGGGGTGGGGTGGGGGGCTATCGGAAACAACCCCTCTACCTGGGAGAGGTAAGGTCTGCATACACTCTACCGTCCCCGGCCCCACATTGTGGAATCATGCTAGGTATGATGTTGTATAGATTCCAAGTCATTGTAGGTATTTTGAGATAATTTTCTTCCATGTGATTTTAGGTTCACCTTTATCTCCTTTCAACATCTTCAATTACCATAGTTTCACATCTTCAAACTGTTGCATTTAGGAGTCAGCATAGGACATGACCAAACTGTCTCAAAATTCAAATCGAGAGATCAATAATCTAGTTGCATAAAAGCTCTAACGTTTATGAAAGTTTTAAATGATTTTGTGTGTGTATGTGAAAAAATAGGTACATATGTGTGGAGATACAAATATTTGCTAGCCAACTAGTTTGCACCTATATTTTGACTCCATTGGATGATTGGTTTGCATTGAATTTAAAGAGAAGCATAACTGGTCAATTGTGGGCACACAGCAAAGCATTGATATAATAAGACTGCTTTTGTTCTTGATCAAAAAGAAAAAGAAAAAAACTGCATTGTTTTATAGATAATTTGCCATATAGTATTGAAATGAAATGGTTCATAATAGAGTGGAAGGCATTCAAAGGATTTATATAGCTGTCCCTACTAGTTAGGGATTGAGATATGGTTTAATGATTGAATAGGAAGTTTTCAACTTCTTGTATTTATTTATTTACATTTTTTGTTTGATGAATTGGCTTAATAGTTAGATGTACAAATGTTCGTTCTTTAGTCAAAGTTTCTAGCTCACATATATTCTAAACATGCAGCTTTCTGCTATATCTGAAACGAATTTCCATTATCAAGACAAGAGTTCTCCCATCGGTTATGTGGTATATGTTGCGTCGAACATGCAGGTACATTCACAATTGTATTCCTGCATTTGGTGTCAATTCATTTTTATGGACGTTTTTGGCGTACTCACTGATTCTTTTTATCTTGTTTTTTTCTTCATGCAACTGATATTTTATGAAAAAACAGAATGCTAGAACCAAAAATAGCTCTAGAAGTATAGATTTTTTACAATTCCATCACATATCCAACTCCTAAAATGATAGATGTTCAATGGCGAACAATCGAGTGATGGGCATACTTCCATTGCTATACATAGGAAGTAACAAGTGATGTCAAATATTCTTCTTGTTCTCAAATCTTTTGCAATTTTTCCATATTAAAACGCAAGTTCGCTGGAGCTTAAGAAACTCAAAATGCAGACTAAGGGAACTGTTTTCTTGCCCTCCTCAACATGACATTATCAAAAGGCTTGACAGTGAAATTTCCTTGCTGATTGCATTGCCACGTGAATATAGCTAGCAGCGCAAACTTTGTGCTGATGAACATTGTGTTACCATTAAAACTTGTTACTAATTCCCGATATATAATGCTGATTTAAATGAAATCCCACTTTGGATGTGCACGGGCATTCAAAGGTATTTACTAATGTTTTGGGTCACTCCTCCATAAGGTGTTCTTTTGGATCATCAGTTACCTGTTCATGTTATTTGAGTCAACTTCTGGAATGCCTTTTGTGACACTCATACTAAAATCTGTGTCTGAATCTTAAATTTGGTTTACCGTTGCATGAGACTGTTGAGCTATATAAAGTCCACATATGATATGCAATGCTTATAAAAGCTTGGGTCACCCCACTCACTGCTTTAAGGCTTTGAGTTGAATATTTAGATTCTTTCATATATCATCTAGCAGAATAATCTTAGTCCTTCAACTCAGCCATCTTCTTCTCTTGTACTCGTTTGTCCTTATGATCGCCAATCCCAAAAGTTTCTGTTGACTCTGGGCCGCTCCATTTTACCACCTCCCTAATCATTCTTTTTTCCCTCATGGTAGAAATGACAGATGTCAACGGTTCAAATCCCATTCTCTACATACAAGAATGTTATCTATCGGAAATAATTATGTAGCGCACAGAGGTAGGGGTAAGGTCTGCATACATCCTACCTTCCCCAGGCTCCACTTGTGTGATTATACTGGGTATGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGTGGAGATGACGAAGAGCTTCTGGAAAGTGGTTGGCATTGCTATTTCCCTACCAGTGTTATCTCAAAATGTACTCCTCTCCCCCCTCTACCTTAGATTTTATGTGCTATCAGAATTTCTCCATCCTCCAATGATTTTCTTCCATAAAGCAGCTTCATATGAAGTTAATATGCCAGTATATCTAGAGGTATTTAACTCCCAATTCCTCCATCCCCATTTAGAAAGTAACCTTCTCTAATTATGACAATGTGAATAAATCTCTTCCTTCCTATTCCACAGAAAATTCAAGAATTCAGAACTGCTAATGAAAATGGGGTCAGATAAATAGTATAGTAAGCAAAATCATATGAAAAGAAGGGGGGTGAGAGTTTCTTGTCTATTATTATTGTTGGCTTAGTGAAGAAAGGCATAAGTTAGGTTATTAAATTAGAGAGTACACTCGATTAAGGTTATCTTTCCTTCTTCTGACAGAGTGCCCTAGTGAACCTTATCGACAACAAGGTTTCATTGTTAAATCTTCATGAGCGGACCTCGTTTGCCAGAAGATCACTGCCTTTGCCTGCTACCACCCTTGTCATGTCCTCCACTTCCTGAATCTATTCCAGAGGAAAGAGTTCACCCTTGCAAACATTAATTGTCAAACCAGAGATTGCCTGAAACCATAATAACGAAGAAGTAAACATATTGTTAATGGAACCTTCTTCAAAAAAATCTGAAGGGTAAGCTAGTGAGTATCCTTTTTTAGCTTTTTCTGCTGTGAAAAATATAAGAAAAAATATTATTGAATTGTTATTGTGTCTACATTATTACATTGAGACCCTATTTATAGACCCTAGAATACAATCCTTTACCAAGTAGGATACTATTTAGTATTCCTGTTTCTATTCTAATAGGATTGTATAAACCTATTCCTATTCCAATAGGATTGTATAAACTTATTCCTATTCTAACACTCCCCTCAAGCTAGTGCATACAATTCATGTACCTAGCTTGTTACAAATGTAATTAACACGAGGACCAATGAGGGGTTTGGTGAGATATCTGCAAGTTAATCAGTCGACTTCATAAAATTGACAATCAATCTCAATGTGTTTGTCTTCTCATTAAATATTGGATTTGATGCATAATGTCAACAAACACAGATAAATTCTAGTGTTGAACTTTCCAAACCAAACCTGCAATATTGGTTCAGACCATAGAGTGATTCACATAATCGACATACAAGGCTACTAAACTCCCCCTGAACAACGACGTGCTCAAAACCTAGTATAAAGTATATGGATCATGTTGGAATCAATAAACGAGTCGATATTAAACAAGTCACCGAGAAACTGGTTGAAACATGCTCATATGTCGAGGTATTAGATTTGATAGCTAAAAGTGGTCACAATCTAAGAAATAAAATTATATAGGTAGGGTCGAAATGATGTCACGATCTAACTAGAGAATGGAAATTATATAGGATAGTTCGAATTTATGAAACGACCCTATTGAAAGAGAAATAATATGGGTAGGGTTGGAATGATAACATAGACCTACACAAATCAGATTTGAGGAGTTATCGGAAAGATGAATGGAACTATGCAAATCAAATCTGAGTCACTGAAAGGACACATGATGCTATGACACTCAGATATGAGAAAATAGTTTGGAAAATTACATGGCACTACACAAATTAAATATGAAAAGTGATTCGAAGAGATGTACGGTGCTACGCAAATCAGATATGCAAAAAAAAAGGGTAGTCATTGGAAGGATGGCTCGATGCTACACAAATTATATATGAAAAAGTATTCACTAGAATGATGGCACAATGCTACACAAATTTAATATGAAAAAGTAGTCGGTGGATGATGGCACGATGCTACAAAAATTAAATATGAAAAAGTAGTCACTGGAATGATGGCATGGTGCTACATAAATTAGATATAAGAAATTAGTCACCCGAATGATACACAGTGAGACAACTTTTGCTAACATAATCTTAGCAAGAGGGGAGGCATATATGGATAATAGCCGCTCGCCGGCTGCGGAAGCTCTTTGATTGTTTACCAAGATCATAAAGACCCGTCTCACTCGATGTTGGGGCCCCCCAAATCAAAATTGTCCACGCAGCAGATGTTAAGCACTGGACATTGAGATGGGGTGTTAAAGAATGTCAAATAGTCCCACATCAGTAATTAATGAGATGGGTGGAATCCTTAGAAGGCTTGGGAAATCCTCCTCCCTTTGATCTAGCTTTTGGGGTGTGAGTTAGGTGTAAGACCTAATTCAACATCTGCAATAGAGGAGATTTCCATTGGACTAGTTAAAAGACTTAGATAGCACCGGGTTTACGTAAGAAAAAGTTCATGTACAGAAAAGAAATTAGATTAGTCATTGCACTAGAGCGTCCAGGAACCTCCTGCTTCGGGGCCATCTCCTTTTTTACCAGTCGAGTTGCCCTGTCAACCCTTTATGGCGCTTGCTTCTTAGCTAAAACTCATAGAGCGCAAACATCATAAATGAGAACTAAACATAGTATGACTGCCTAGCGCACGGGGAATGAATTAGCTATTTCACTCGAGAGAGAAATTGTTGAGTGAGTGATCCGGCCTCTAGCACTTCATTGATGGATATGTCACATGTCTTCAAAAAACCCGACCTCAGTAGAAAACGAATGGCAAAGCTCTCATTTACACTAGCATAGAGTTAGCCGATGCTTATTCCCTAGATACCATCATTGCTTCTTCTCTGGAGAAAGAAGTTCACAACTCATGGGCCTTCTACCTCCGATTGAATAGCGAGTCAATCATAATCCATATTTCGTATTTGAATAGGTACTACCAATCCATTTTAACTGAATTTTTCATCAACGTCAAAGCAAAGAACTATGTTTCTTTCCTTCGAAGCTCCAGGATGAAGATACTATTTTTACGAAAAATTGTTTAAAAAAATTAAGTCATGTTTGCAAAACCCCTTTGATTGGCAAGTTGATTCTTGTCTTGATCAGAACATCTTTCAGTCTAAGGCATCTGTCTTCACAGATTCTCTCAATCTTTCTCTTATTCTCATAGTGTAGATAGTTGAGATAACTTGATATGATTGTGGTCAGGTATACACTCTATAAATTCATTTTATACACCAGTTTCCCATTCTAATAATGATTTTTTTATGGACTTATCAAAAGAATATTAACTGTGTATATTTGAATCATTTTTTCCAGCTTTACCCGCCAATAGATTGGTTGGTTGGGTCATCTTTACCTTCAAAGTTCAGTCCAGACATTATTGAAGCAGTTCTAACTGATCTCACACCACAAAATGTCAG</genome_strand>
        <mrna_strand>AAGGCAGGAGCTTCTCAAATTTTATAAAGAAAATTATTCAGCCAACTTAATGCATTTGGTTGTTTATGCAAAAG....................................................................................ATTGCCTTGATAAAACTCAGACACTGGTACAGGGCATATTCCAAGAAGTTCCAAATACCAATAGAAGTTACTCCCCTGTTACTGATCAGCCTTGCAAATCAGAACATCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTAGTCAGAGCTGTTCCAATAAAACAAGGTCATAGTTTGAGGCTTGAGTGGCCAATAATTCCAGACTTAGCTCATTACAAGGAAGGGCCTTCACTCTATTTGAGTCACTTGATTGGACATGAAGGAGAAGGATCCTTGTTTTATGTCTTAAAGAAGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGCAACAAGCTTATCGGCTGGAGAGTCAGGCGGCGGTCATCACTTCTCCTTTTTTTGAAGTTTATATTAGTCTGACTGATGCTGGGCATG....................................................................................................................................................................................ACCATTTTGAGGATGTTGTGGCACTGGTCTTCAAATATATTCACCTTCTGCAACAAGCTGGTGCCCGCAAATGGATATTTGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACCCGCCAATAGATTGGTTGGTTGGGTCATCTTTACCTTCAAAGTTCAGTCCAGACATTATTGAAGCAGTTCTAACTGATCTCACACCACAAAATGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330643" ref_strand="+" ref_description="SGN-U330643        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | peptidase M16 family protein / insulinase family protein, contains Pfam domain, PF05193: Peptidase M16 inactive domain; similar to insulin-degrading enzyme (Insulysin, Insulinase, Insulin protease) (Mouse) SWISS-PROT:Q9JHR7 | chr2:17436372-17443188 REVERSE | Aliases: T11A7.11, T11A7_11(evalue: 2e-94, score=342) genbank/nr: gi|15485612|emb|CAC67408.1| insulin degrading enzyme [Lycopersicon esculentum](evalue: 1e-101, score=372)">
      <seq>acatcaagtttcaacagccatacgagcaagctttgtactactgttcattaatacttagggaacactcatggtcatgggatgatgaatgtgaagctcttactaatcttgaaattgatgaccttgttaaattttatcctctgcttctatcaaggacatttctggagtgttatttagcaggaaacatcgactcaaaggaagcagtttcaatgatccagcacgttgaagatgccttgtacaagggttcccagcctctatctcgggccctttttgcgtctgagcattcgtcaagtagaattataaatcttgaagagagcaagaattatttctatgctgcagagggcctaaatacatctgatgaaaattctgctcttgtccactacattcaggtgcattcagatgaatacatcaagaatgtaaaactgcagctatttgctctgatagccaaacaaccagctttcgaccagcttagatctgttgagcagcttggttacatcacatcactttcacggacgagtgatgctggtgttcgtggactgcagcttatagttcaatcatcggtcaaggatcctagatatatcgagtcgcgattccaggcatttcttaagacgttggaaactcagcttcatgacatgtcagatgatgagtttaagaaaaaagtcaatgctcttattgatattaagcttgagaagtttaaaaacttaccggaggaaaccaattttttctggtgggaaatttctagtggcaccctcaaatttgatagaattgaaaatgaggttgcagcacctgagcagataactaaaacggacctgatccatttctttaatgaatatgtgaacgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="39918" stop="44369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40218" g_stop="40394" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40395" i_stop="40477" i_length="83">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40478" g_stop="40686" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="386" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40687" i_stop="41429" i_length="743">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41430" g_stop="41554" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="511" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41555" i_stop="41670" i_length="116">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41671" g_stop="41722" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="563" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41723" i_stop="41819" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41820" g_stop="41906" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="650" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41907" i_stop="43220" i_length="1314">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43221" g_stop="43343" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="773" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43344" i_stop="44001" i_length="658">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44002" g_stop="44069" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="841" r_length="68" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-U330643" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40218" e_stop="40394"/>
          <exon e_start="40478" e_stop="40686"/>
          <exon e_start="41430" e_stop="41554"/>
          <exon e_start="41671" e_stop="41722"/>
          <exon e_start="41820" e_stop="41906"/>
          <exon e_start="43221" e_stop="43343"/>
          <exon e_start="44002" e_stop="44069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCAAGTTTCAACAGCCATACGAGCAAGCTTTGTACTACTGTTCATTAATACTTAGGGAACACTCATGGTCATGGGATGATGAATGTGAAGCTCTTACTAATCTTGAAATTGATGACCTTGTTAAATTTTATCCTCTGCTTCTATCAAGGACATTTCTGGAGTGTTATTTAGCAGGTTCTTTTTTCTTCCCTACTAGACTTCTCTAGGATTTTTGTCAGCTGTGTAGCATATTCACCCTTTTGATTATCCCTCTTCAGGAAACATCGACTCAAAGGAAGCAGTTTCAATGATCCAGCACGTTGAAGATGCCTTGTACAAGGGTTCCCAGCCTCTATCTCGGGCCCTTTTTGCGTCTGAGCATTCGTCAAGTAGAATTATAAATCTTGAAGAGAGCAAGAATTATTTCTATGCTGCAGAGGGCCTAAATACATCTGATGAAAATTCTGCTCTTGTCCACTACATTCAGGTACATGTGAAGTTACAACTTTTGTTCTTTTTTTTCAATGTCTTTTTTTAGTAGTATCATATATATGACTGGATGCCCCATGGGAAAAGTCATATTCTTCTGCAAAGGCTTTTTTTTGTACCTCCTTACAACAACATATCCAGTGTAATCACATAAGTGCAGTTTGGGGAGGTTTGGGTGTATGCGGACCTTAAGTCTAATTGTCTACCTTTACCCATTATACCCCTTATATATGGGGTTTCCCTTTTGTTTAGCAATAAACTCCTACTTGTATGGAACAAGTATTGTTAGAACCGTTAAAGAGAAAAAGCAAGAATCGAATGATCAAAACTGGTTGGAGCTTTTAAAGAATTCAAAACCTAAAATGTCTATAATGCACAATCAATTTATCTTTTTCGAAATTTGGCCATTCTACTGACTTGTGGCTAGACAAATAATTTGTATGTATTTAAGCTCTCAAAAGTTCACAATGAGCAGAATGCAAAATCTTTCTATTGAACAACTTTATCCTGCTGGATATCTTATCTTTATAAGTTGGCTCTATATGAGTCCTAAGTTGCACAGACTCTTCACTTTCGATGCCGCACCCGTGCCGAATTCTCCAAAAATACACTACTTTTGGAGAATCCGACAAGCACCCGTTGACATTTGGAAGAGTCCGAGCAACATAGTATGAGTCTGGCCGTCTTTCTTAAGTTGGCTGTTTGGAAGGATCTGATACCAAAGCAAACTAAAATATGCAGGTGCATTCAGATGAATACATCAAGAATGTAAAACTGCAGCTATTTGCTCTGATAGCCAAACAACCAGCTTTCGACCAGCTTAGATCTGTTGAGCAGCTTGGTTACATCACATCACTTTCACGGACGTATGCCAACACTTCTCATTTTAATACTCTGTGAATGTCTCAACTCTTGTGACATGTGGCACATCTATTAAATTTTATTTCACTGCTGAAACCAATGTAATGTGGTTAAACTGTAGGAGTGATGCTGGTGTTCGTGGACTGCAGCTTATAGTTCAATCATCGGTCAAGGTAAACACATCATATCTTCTGTATGTAAGCCAGCGAAGAAATATTACAAAAATCCTTTTACTTCAGTTTGAGAGACTAATGGTTAGCCACAATACAGGATCCTAGATATATCGAGTCGCGATTCCAGGCATTTCTTAAGACGTTGGAAACTCAGCTTCATGACATGTCAGATGATGAGTTTAAGGTCAATTATTGAACCTCCTTTTGAGATTTTCATTCAGAATAGGTACCATTTTCAGGGTTCAAATCTCCAGAAGGTAAAAACAAAAATTGGATAATTTCTTCTCATCTGCTTGAGCCTTGGTAGGCAGAGTCCAGTACTAGGGGTTTTAACCAAACTAAGCCATTATATAAAGCCATTCATCAAAATAATATGTTTTTCTAAAATTTTACAAAACTAGTATAAACGTATTCCACAGTAACGTTTTAGGATATATTTTATTTTTTAAAAGTTGATGGCGTCAGATTGATATACGTTACTCAAAGTAATGTTTTACTCATAAAACGTTACTCACAGTAACATTTTAGGAGTAAAACGTTACAGAAAATAACGTTTTAAAAGTAAAATGTTACTTATAGTAACGTATATCAACCTAATGCTGTTAGTTTTTAAAAAATAAAATATACCCTAAAACGTTACCGTGAAATACGTTTATACTAGTTTTGTAAAATTTTAGAAAAATATATTACTTTGGTAAATTGTTTTATATAATGACTTAGTTTGATTAAAAATTCCCAGTACTAGTCTAGTTGCAGACAAGCTGAATTGGCCACTGCTATTATAAAAAGAACTATACCAGAAGAACAACAATAACACAATGGCATCATTGTGACAACTCTCAGGAAAGTAATATTACCAGAAGTATCTACACGGAAATATCTTAAGATGAAGATCATAAATACCCAGAATAATGGTAAAAAGTTTGAGAGGGTAGGCAAAGTCAATATGAAAAATATTTGCTATCATGAGGAACGCGGTTTTTACAAGGCAGCATAAATTGTGACACTTCAATCAGTAAAAATTAGAGGTGTGCTTAGTTTGAATACTGTTTGATATTGTCATTACATCTTCATCAGATGCGCTCAGTAACCCTGCAAGAGAAATTTATTTGGCCGACTGTTCTTGTACTTAACAATCATTTGCTGCTTTTGCTGAGGATAGAATGTGATGTATCTGCTATCCTGATCTTCTGGTACTCAGAAAATTGATAAGTCCATGTGGCTTCATATGTTATGTTCTTTCAATGCCTTTCTTCTATTAGCATCACTGGTCCAAAGGGCAGGTCACAGACCGACTTCTTGGTCATCAAAAAAAAATAAAAAATAAGAATAATAACAATAAACCCGGTCAGTAACAAACCAATAAAGTCAAAATCAAATGATGGTGCTGAATAAATTGTTAGGTTGATGTGAAGCTTATTTATTATTTCCACTTGTCTGCAATCTTATATATTTTGCCTCATCCTCTAAGATTTTGATTTTATCATATACAATGCAGAAAAAAGTCAATGCTCTTATTGATATTAAGCTTGAGAAGTTTAAAAACTTACCGGAGGAAACCAATTTTTTCTGGTGGGAAATTTCTAGTGGCACCCTCAAATTTGATAGAATTGAAAATGAGGTATGGTTTTCTTTTATTCATATGCCATTTTTTATTTCCATGAATTGAATTGACAGGTAAAAGGAGATTACTGTATGTCTTTCCTTCTCCCTTTCCGGGAGGCGGAGGATAATTGGCATGGGTGGTAGCTGTTTGGCACCTTTGGGTCAAACTAAAGGGATACAAAGAAAGAACTCTTCCAAGTCTTTCTTACGAAATGTTGACTCATTGAGGAATATAATTCTTGATTTCTTCCCATCGACCTAAGCCTTGGTAGGGGAAGGTGTTGGTGGATAGTCAAAGTGCACGAAAGTAGGCACGAATACCTCTATTGTAGAAAAATATTCTTGCTTTCTGAAATGCTGAATAAACCAGTAAAAGGTACTATGGCTCACTGTTCCCTGAAAGTTAATAATCTTCCTTTTTTTAGTTTCTGGGAGTTCATAAGGTACTATTTGGCAGGCTTTATTTAAGCTGAGGGTCTATAGGAAACAACCTCTCTATCTCTACGAGGTAGGGGTAAGGTCAATGTACACTCTATCCTCCCTAGACCACAGTAGTGAGATTCCACTGGGTACTGGATATGTTGTTGAGAGTTCACAAGGTAGGATAATTGCCTCATGGACGTACTTTCTCTCTGAAACAAGCATTTAAACTGACTTATATTTTCATGAATCAGGTTGCAGCACTGAAGCAGATAACTAAAACGGACCTGATCGATTTCTTTAATGAATATGTGAACGTTGG</genome_strand>
        <mrna_strand>ACATCAAGTTTCAACAGCCATACGAGCAAGCTTTGTACTACTGTTCATTAATACTTAGGGAACACTCATGGTCATGGGATGATGAATGTGAAGCTCTTACTAATCTTGAAATTGATGACCTTGTTAAATTTTATCCTCTGCTTCTATCAAGGACATTTCTGGAGTGTTATTTAGCAG...................................................................................GAAACATCGACTCAAAGGAAGCAGTTTCAATGATCCAGCACGTTGAAGATGCCTTGTACAAGGGTTCCCAGCCTCTATCTCGGGCCCTTTTTGCGTCTGAGCATTCGTCAAGTAGAATTATAAATCTTGAAGAGAGCAAGAATTATTTCTATGCTGCAGAGGGCCTAAATACATCTGATGAAAATTCTGCTCTTGTCCACTACATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCAGATGAATACATCAAGAATGTAAAACTGCAGCTATTTGCTCTGATAGCCAAACAACCAGCTTTCGACCAGCTTAGATCTGTTGAGCAGCTTGGTTACATCACATCACTTTCACGGAC....................................................................................................................GAGTGATGCTGGTGTTCGTGGACTGCAGCTTATAGTTCAATCATCGGTCAAG.................................................................................................GATCCTAGATATATCGAGTCGCGATTCCAGGCATTTCTTAAGACGTTGGAAACTCAGCTTCATGACATGTCAGATGATGAGTTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAGTCAATGCTCTTATTGATATTAAGCTTGAGAAGTTTAAAAACTTACCGGAGGAAACCAATTTTTTCTGGTGGGAAATTTCTAGTGGCACCCTCAAATTTGATAGAATTGAAAATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGCACCTGAGCAGATAACTAAAACGGACCTGATCCATTTCTTTAATGAATATGTGAACGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329447" ref_strand="+" ref_description="SGN-U329447        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:21272911-21273599 FORWARD | Aliases: T8H10.50(evalue: 4e-14, score=74.7) genbank/nr: gi|15230306|ref|NP_191304.1| expressed protein [Arabidopsis thaliana] gi|11358423|pir||T46181 hypothetical protein T8H10.50 - Arabidopsis thaliana gi|6706416|emb|CAB66102.1| putative protein [Arabidopsis thaliana] gi|21537251|gb|AAM61592.1| unknown [Arabidopsis thaliana](evalue: 3e-12, score=74.7)">
      <seq>gttcaagttttcttatacatcaaagcattgtgaataaagacataatccatgggtaaatacacggagatagtggatgtaggtgtgagaatagtagctaggtttcattctcattgccctcagactgctcgaatgtattaccatccaccctccaacattcatggcaatgcttcagattttcctcgtcgttgtaaaaaagagaaacttgggtttattgctcataatcaagaatcgaactctatggagagttatggtgtcgaggcttccatgcatgttgacactgcagattttatcgttcacacattggactaagtctatgtatgtacggaactatgaatactcatttttgtgaagattgaaagtgagaatataatggactgcggtgtcaagtttgtgtttatacgtgatatcagcgtatataagttaaattcttattttattgtgtgattattgtatatattgtttatgatatgctgggttgattggtttgaaggaatagaaaagaaagaaaaagagagattaaatgagtgatttaagtaaaagttatgtgaagtctgggatgtgattgtttgttgatcaagtttgtgtatatgggggtttgtatgaattgaaagtattttaatactttatttgattgaagatgttttagttccaagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="46627" stop="45368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46327" g_stop="45666" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U329447" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46327" e_stop="45666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAGTTTTCTTATACATCAAAGCATTGTGAATAAAGACATAATCCATGGGTAAATACACGGAGATAGTGGATGTAGGTGTGAGAATAGTAGCTAGGTTTCATTCTCATTGCCCTCAGACTGCTCGAATGTATTACCATCCACCCTCCAACATTCATGGCAATGCTTCAGATTTTCCTCGTCGTTGTAAAAAAGAGAAACTTGGGTTTATTGCTCATAATCAAGAATCGAACTCTATGGAGAGTTATGGTGTCGAGGCTTCCATGCATGTTGACACTGCAGATTTTATCGTTCACACATTGGACTAAGTCTATGTATGTACGGAACTATGAATACTCATTTTTGTGAAGATTGAAAGTGAGAATATAATGGACTGCGGTGTCAAGTTTGTGTTTATACGTGATATCAGCGTATATAAGTTAAATTCTTATTTTATTGTGTGATTATTGTATATATTGTTTATGATATGCTGGGTTGATTGGTTTGAAGGAATAGAAAAGAAAGAAAAAGAGAGATTAAATGAGTGATTTAAGTAAAAGTTATGTGAAGTCTGGGATGTGATTGTTTGTTGATCAAGTTTGTGTATATGGGGGTTTGTATGAATTGAAAGTATTTTAATACTTTATTTGATTGAAGATGTTTTAGTTCCAAGAAAAAAATT</genome_strand>
        <mrna_strand>GTTCAAGTTTTCTTATACATCAAAGCATTGTGAATAAAGACATAATCCATGGGTAAATACACGGAGATAGTGGATGTAGGTGTGAGAATAGTAGCTAGGTTTCATTCTCATTGCCCTCAGACTGCTCGAATGTATTACCATCCACCCTCCAACATTCATGGCAATGCTTCAGATTTTCCTCGTCGTTGTAAAAAAGAGAAACTTGGGTTTATTGCTCATAATCAAGAATCGAACTCTATGGAGAGTTATGGTGTCGAGGCTTCCATGCATGTTGACACTGCAGATTTTATCGTTCACACATTGGACTAAGTCTATGTATGTACGGAACTATGAATACTCATTTTTGTGAAGATTGAAAGTGAGAATATAATGGACTGCGGTGTCAAGTTTGTGTTTATACGTGATATCAGCGTATATAAGTTAAATTCTTATTTTATTGTGTGATTATTGTATATATTGTTTATGATATGCTGGGTTGATTGGTTTGAAGGAATAGAAAAGAAAGAAAAAGAGAGATTAAATGAGTGATTTAAGTAAAAGTTATGTGAAGTCTGGGATGTGATTGTTTGTTGATCAAGTTTGTGTATATGGGGGTTTGTATGAATTGAAAGTATTTTAATACTTTATTTGATTGAAGATGTTTTAGTTCCAAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345789" ref_strand="+" ref_description="SGN-U345789        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: EMB1674 | kinase interacting family protein, similar to kinase interacting protein 1 (GI:13936326) {Petunia integrifolia} | chr1:21557286-21561721 FORWARD | Aliases: F16M22.3, F16M22_3, EMBRYO DEFECTIVE 1674, EMB1674(evalue: 7e-21, score=97.8) genbank/nr: gi|15217905|ref|NP_176117.1| expressed protein [Arabidopsis thaliana] gi|12321382|gb|AAG50760.1| hypothetical protein [Arabidopsis thaliana](evalue: 5e-19, score=97.8)">
      <seq>tcactctatcttcttcattcctcaaacaagtttacttgtatgattggtggttgattaaagttgaaattggtgatggaagcaagcgattgggtgttggaggtttcactgcaaaagagagaccagatggaagagttttccactccacaacaattgcgaagaggcatgatactaccactttagtgacagaggatggcatcaccattcttcttagcggtttcattaacaggtgccgaactcttcaaaatggcttctcatcagaggtttgcaagcagttccttcttggatttccatacaactgggaagagtctgctgctgtgtcatttggagaatcaaccaatgaaaatgcagcctctggaatttctgatttctggtcagcaaatgcatcagctgattgcacaagtagttcctttacactgtctgttgatcatctttcccccaatgtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="52173" stop="48207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51873" g_stop="51845" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51844" i_stop="51745" i_length="100">
            <donor d_prob="0.873" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51744" g_stop="51659" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="115" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51658" i_stop="49494" i_length="2165">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49493" g_stop="49349" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="260" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49348" i_stop="48696" i_length="653">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.592" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48695" g_stop="48507" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="446" r_length="186" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U345789" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51873" e_stop="51845"/>
          <exon e_start="51744" e_stop="51659"/>
          <exon e_start="49493" e_stop="49349"/>
          <exon e_start="48695" e_stop="48507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTATCTTCTTCATTCCTCAAACAAGTACTTTTTTTTTTGTTGATAAGTTGATGTTCTCCTTGAATACATTCAATTTTATACTCCGTAGAAATTCATGGATTTTTTTTTTTTATAAATTTTGCAGGTTTACTTGTATGATTGGTGGTTGATTAAAGTTGAAACTGGTGATGGAAGCAAGCGATTGGGTGTTGGAGGTTTCACTGCAAAAGAGTAAAATTTTTTCCCTTAACTTAAGAATGTTGCTGATTTTTTTTTTATTTCTGTTTTGGGTAAGTTTGTTAAGTAGGGAGTATAAGATTTTGAGGTAGTGGTTTAGAAAAATTCAGGGAGTTCAGTTGACTATACGTATTCTTGAATGAAAGCTGCAATTTTTATTAGTAAGTTTGTTAGTTAGTAGGGAATATAAGATTCTTGAGGTATTAGTTCGTCTAATTCAGGGAGTCGAGTCTTGAATGGAAGTTGAAATCAGAGAAGCTGTCCTCTATGTTGTTCAGACTCTCCAAAAATATACTACTTTTGGAGGATTTGACCCACATCCATCAATTAAAAAAGAATTCAAGCAACATAGGTTCCTCTGTGTTGTTCGGACTCTCCAGAAATGTTGTTGAACTTGTGTTAGATCCTCCAAAAATGTACTGCCTTTGGTTGATTCGACACATACCCATCTATATTTTCAAAGAGTCTGAGCAACTTAGGATGTCCTTTGTTTATGATAATGGTGTCCGTGCGAGCTTGTGTGTCGATTGTTCCAACAGGTACCTGCTACCGTCCATTTGTTAACTCTGCCAGCCAAGGCTTAGGCATGTAGAAAGAAATCATATAGATTTTATTTTGTTTTTTGTTTTTTTGTTTCTGGTGGGATATGAACCTACGAACTCATGGTTCTCCTTCCACTTCATTGACCACTAGCCCACATCTTTTTGTTCTTGTTAATTTTCAAGTTAACTTCATGTTATTATCATGTTTGAAGCAACTTTCTTTTAGTTTGTTACTATTTTGCATCTTCTTGATGCCTTTCTAATGCAATTTAATTACTTCACCAAAAAAGAGTACATCAACATACTAGTGTAATCCCACAAGTAGGGTCTAGGAAGGGTAGGATGTTGCAGACCTTAACCCTACCTTTATGGGATATAGAAGTTGTTTCCAATAGACCTTTGGCTCAAAATAAAAGTACTCGACGTGGGAATTTAAGAAAATAACACAGTTTAATAGCAATACAAGAAAGAGTACAAACTAAAAGAATTCCTTCCATCATTAAAGCATCCGTTAGTCCTCCTATCATTAAAGCATCTGATAATGTTAAGACACTTAAATAGAAATACAACATGAAATATGTTTTCCCTCCTATCACGAAGCATCTGTTGTTCCTCTCCTTCCAAACATTCCAGAAAATGCAAGTAGGGTCTGCTTTCCAATATAATCTGTTCTTAGTATAATACTGGTCATCCCAGCTACTTAGAGCAAGTTTTATCAACCTGGCATAACCATTTTACTTGAAAAATCGCTGGAAACATGTCGAGTTGCCTGGTGAAAGTTCAGTGGAACATTAAGTGATTTACTGGTTCATTAGCTTTTTCACATAGAACACATCTGCTTCATATAGTGAGACCTCTTTTCTGCAGATTGTCAAGTGTTAAACAAGCCTCATGAGTTCCAGTCCAAGTGAAACAATCAGCTCTAAGGGGTGTGATGGTCTTTCAGATTGTTGTCCACGGCCAACGGCCACAGTTTCTTCTTGTCGACAAAAGATTGTTATAGCATGTCTTTGCCTTAAACCTTCTATGCTTCCAATTTCTACAGCACTTATTTTGTGGATATGTTGGATTTTTGAAGCACCTTATTCATTTCTATATAGCGCTGTTAATCTCGCAAGAGGTTAATACATGCTTTTTTTTAGTTAAAATTTAATCAAGACACAGATGATTTGTGGATTTCAGAATTTTGGACTGATTGTCTCTCAAGTTGCCAAACAACTTGTGCTAATCTTTTCCATGTTTTATTGCATTGATCAAGTAAGAAACACAGTTCTAGTAATGTTCTTTTTGTTGGATTGTTTTCCAAGTTGCATACAGAATTGTTATTTGGAAGGTGTGGAATTTTGTTAATGATCCAATTTCCAGAACATAATAAGCACAGCGCAGTTAAAAGGCCTTCCTTTGGGTTCTTTTCCATGAGATGTCAGATAAAAAGTTTATTTATCTTTGCCTCTGGATATCCCTATTGGACTGCTCATATGCAAGCATTTTAATTCATTACTTTGTCTTAGTTTAAAAGTGCTTTAGTGGAACTAGAGTACTGTATTATATATTTCGTGTGACAAGGCAGTTCTTGGAATCAAGTGATGTGATATTTTGTTGCCCTTCCTTAAATAGGAGACCAGATGGAAGAGTTTTCCACTCCACAACAATTGCGAAGAGGCATGATACTACCACTTTAGTGACGGAGGATGGTATCACCATTCTTCTTAGCGGTTTCATTAACAGGTGCCGAACTCTTCAAAATGGCTTCTCATCAGAGGTATTTAAGTTATTTTAGTTCTCAACTCATATGACTGCTTTATTTCAGCTGTTTTGATGGAACATATAATTGAGGTTTACGTTAGCTGAGAAGTTTTAGAGGTTCTATTTGGTCCCATCTGTAGCATTAACTGTCGGAATCATAGTACTATCTATAGTTTGTCAATCTTGGTGGAAGACAATGTATGACTTGCACACACATCTTGTAAAACTTTTAACATTATTTGGTGTTTATAATGAAACTTTTTGACTTAAAAGTTCATATTACTATCCAATGTGTCCTGTCTAGTTAATTATTTTTTTGCTTACCTCTTTCGAGTAATCTCCGCTCAATAATTTACTTCTGGCAGTCTTTCTTCAGCTATCACTCATCTTTTACAGATAAACCTCAGTCTTTTTCTGCTTTTGCGGTTTTAACTAACTCCTTGAGGAACCTAAAGAGGAAGGCCTGCTAAAGCATTAAATGGATTCTCCAAAGTGAGCATTCACATGTTAGTTACAAATTAGAATAAAATCATGTTTTGTGAAGATGAAATAATAAACAATCTCTACCTCCAAGGTAGGGGTAAGGTCTATGTACACTCTACCTTCGTCCCTCCCTAGACTCCACTTTGTTGTTGATGAAGATAACAAACAGAAATTTCAAACTAACAGGTTTGCAAGCAGTTCCTTCTTGGATTTCCATACAACTGGGAAGAGTCTGCTGCTGTGTCATTTGGAGAATCAACCAATGAAAATGCAGCCTCTAGAATTTCTGATTTCTCAGAGTCAGCAAATGCATCAGCTGATTGCACAAGTAGTTCCTTTACACTGTCCGTTGATCATCTTTCCCCCAATGTTTTA</genome_strand>
        <mrna_strand>TCACTCTATCTTCTTCATTCCTCAAACAA....................................................................................................GTTTACTTGTATGATTGGTGGTTGATTAAAGTTGAAATTGGTGATGGAAGCAAGCGATTGGGTGTTGGAGGTTTCACTGCAAAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCAGATGGAAGAGTTTTCCACTCCACAACAATTGCGAAGAGGCATGATACTACCACTTTAGTGACAGAGGATGGCATCACCATTCTTCTTAGCGGTTTCATTAACAGGTGCCGAACTCTTCAAAATGGCTTCTCATCAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGCAGTTCCTTCTTGGATTTCCATACAACTGGGAAGAGTCTGCTGCTGTGTCATTTGGAGAATCAACCAATGAAAATGCAGCCTCTGGAATTTCTGATTTCT--G-GTCAGCAAATGCATCAGCTGATTGCACAAGTAGTTCCTTTACACTGTCTGTTGATCATCTTTCCCCCAATGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341455" ref_strand="+" ref_description="SGN-U341455        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain PF03385: Protein of unknown function, DUF288 | chr2:17431436-17434360 REVERSE | Aliases: T11A7.13, T11A7_13(evalue: 5e-46, score=181) genbank/nr: gi|18405801|ref|NP_565960.1| expressed protein [Arabidopsis thaliana] gi|25408755|pir||H84845 hypothetical protein At2g41770 [imported] - Arabidopsis thaliana gi|2335100|gb|AAC02770.1| expressed protein [Arabidopsis thaliana] gi|15810461|gb|AAL07118.1| unknown protein [Arabidopsis thaliana](evalue: 4e-44, score=181)">
      <seq>agaatctttaacacttgagttcaagaactcaaaaagaacataaagctctcatttttactcttgtgtgtgtgtaaaattgaggttgtggggtttcaatgttagtccaagatcgtgaagatggtatttctaaatcaccaaaaggaccaaaacccattagagaaagatcatcaatccctctatcaagaaccccaaatcgtttaaatggagccaagaatcttgatttttctacatgggtttctgaaaatctttacaaaatcctcaccattttgctcttaatctctaccattgctattttcttctaccttcgtagtgctgctggtgataccactactctcctttgcttacagtcaactcaaactcactccatcagacctgagttccctaaaatcaactggaataacattccagctatcttagataagtctactccttatgcaaattttcgatctgagaaatgggttgtggtttctgtttcagattacccgtcggattcgcttagaaagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="67029" stop="68135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67329" g_stop="67835" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-U341455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67329" e_stop="67835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCTTTAACACTTGAGTTCAAGAACTCAAAAAGAACATAAAGCTCTCATTTTTACTCTTGTGTGTGTGTAAAATTGAGGTTGTGGGGTTTCAATGTTAGTCCAAGATCGTGAAGATGGTATTTCTAAATCACCAAAAGGACCAAAACCCATTAGAGAAAGATCATCAATCCCTCTATCAAGAACCCCAAATCGTTTAAATGGAGCCAAGAATCTTGATTTTTCTACATGGGTTTCTGAAAATCTTTACAAAATCCTCACCATTTTGCTCTTAATCTCTACCATTGCTATTTTCTTCTACCTTCGTAGTGCTGCTGGTGATACCACTACTCTCCTTTGCTTACAGTCAACTCAAACTCACTCCATCAGACCTGAGTTCCCTAAAATCAACTGGAATAACATTCCAGCTATCTTAGATAAGTCTACTCCTTATGCAAATTTTCGATCTGAGAAATGGGTTGTGGTTTCTGTTTCAGATTACCCGTCGGATTCGCTTAGAAAGCTTG</genome_strand>
        <mrna_strand>AGAATCTTTAACACTTGAGTTCAAGAACTCAAAAAGAACATAAAGCTCTCATTTTTACTCTTGTGTGTGTGTAAAATTGAGGTTGTGGGGTTTCAATGTTAGTCCAAGATCGTGAAGATGGTATTTCTAAATCACCAAAAGGACCAAAACCCATTAGAGAAAGATCATCAATCCCTCTATCAAGAACCCCAAATCGTTTAAATGGAGCCAAGAATCTTGATTTTTCTACATGGGTTTCTGAAAATCTTTACAAAATCCTCACCATTTTGCTCTTAATCTCTACCATTGCTATTTTCTTCTACCTTCGTAGTGCTGCTGGTGATACCACTACTCTCCTTTGCTTACAGTCAACTCAAACTCACTCCATCAGACCTGAGTTCCCTAAAATCAACTGGAATAACATTCCAGCTATCTTAGATAAGTCTACTCCTTATGCAAATTTTCGATCTGAGAAATGGGTTGTGGTTTCTGTTTCAGATTACCCGTCGGATTCGCTTAGAAAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327023" ref_strand="+" ref_description="SGN-U327023        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain PF03385: Protein of unknown function, DUF288 | chr2:17431436-17434360 REVERSE | Aliases: T11A7.13, T11A7_13(evalue: 2e-102, score=368) genbank/nr: gi|18405801|ref|NP_565960.1| expressed protein [Arabidopsis thaliana] gi|25408755|pir||H84845 hypothetical protein At2g41770 [imported] - Arabidopsis thaliana gi|2335100|gb|AAC02770.1| expressed protein [Arabidopsis thaliana] gi|15810461|gb|AAL07118.1| unknown protein [Arabidopsis thaliana](evalue: 1e-100, score=368)">
      <seq>gtttaacaaagtttttggtagcgtggagatccagtaaacacaggttgtttgaaaagattttggagttaagctatgcaatggctgaagaaggcttttggacagtgcaagatgtcaagttcactgctgcatggcttcaagatctgcttgctgttgggtacatgcagcctcggctaatggctttagagttggatcggccaagggcaagcataggacatggtgacaggaaggaatttgtacctcagaagttgccatctgtgcatcttggggtagaagagattggtacagtgaattatgaaatcgccaatttgattaagtggaggaagaattttggcaatgttgtgctcataatcttttgtagtggacctgttgaacgtactgccttggagtggagattactatatggcaggatatttaagacagttatcatattgtctgaccagaagaatgtagatcttgccgttgaaaaaggaaatttggattatatgtacaggtatgcaccaaagatacttgataggtacactagtgcagaaggctttctatttctccaggacgatactatccttaattactggaacttacttcaagcagataagtcaaagctctggataggaaacaaggtatccaagtcatggcacgctgttccagtagctaacaaatcggactggtttgtgaagcaagctgacgttgttaagaaagtggtagcaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="68355" stop="72194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68655" g_stop="69144" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69145" i_stop="70868" i_length="1724">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70869" g_stop="70995" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="617" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70996" i_stop="71802" i_length="807">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71803" g_stop="71894" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="709" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-U327023" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68655" e_stop="69144"/>
          <exon e_start="70869" e_stop="70995"/>
          <exon e_start="71803" e_stop="71894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAACAAAGTTTTTGGTAGCGTGGAGATCCAGTAAACACAGGTTGTTTGAAAAGATTTTGGAGTTAAGCTATGCAATGGCTGAAGAAGGCTTTTGGACAGTGCAAGATGTCAAGTTCACTGCTGCATGGCTTCAAGATCTGCTTGCTGTTGGGTACATGCAGCCTCGGCTAATGGCTTTAGAGTTGGATCGGCCAAGGGCAAGCATAGGACATGGTGACAGGAAGGAATTTGTACCTCAGAAGTTGCCATCTGTGCATCTTGGGGTAGAAGAGATTGGTACAGTGAATTATGAAATCGCCAATTTGATTAAGTGGAGGAAGAATTTTGGCAATGTTGTGCTCATAATCTTTTGTAGTGGACCTGTTGAACGTACTGCCTTGGAGTGGAGATTACTATATGGCAGGATATTTAAGACAGTTATCATATTGTCTGACCAGAAGAATGTAGATCTTGCCGTTGAAAAAGGAAATTTGGATTATATGTACAGGTTAGTCATTGGCATCTTTTTTCTTAACATTTTAGTTTTTATGGTAATAAGTTATGGTTTTTGTATAGACGGGGTTATATGGTTCTTTGGACTGATTGGTTCACAGTTTTGTTTACTTCTAAGAGGTCCATTGTTTAAACCTGGACATGTATCCTTTGAGCTGAGGGGTATCAGAAACAGCCTCTCTACCTCCAAGCGTACACTTAACCTTCCCTAGAGCTCACTTGGGTATGTTGTTGTTGTTCTGTACAGAGGGGGTAGTAAGTATGAACTTGCTCTGCCTTGTTAGCGTATAAAGCATATCATCGATTGAATTATAACCTTTTTTTCAAATCTTTTTTGTTTGGTATACATTTCTTTCATTTGTTTTGGTAGAGGTGATCATAAGATAAATCAGTGAGCTCACTGAGTGTCGCCATGCAAGAGTGAAAACTTATAACTTGTCTCTTTGATTGTTGAAAGCTCATTAAATGTAATGGACAGTTTTCTTAAAACATCTTATTCCTTTGCTTCATAATCTAATTCAGTTTCTAATAAAACTTTGGTATATACCTGTTGCAATTTGCGACTCTTGTTATACCAACCAGTAAATCAGTGCTAGCAGTAAATCAGTTGTTTTTTTGTGTAAAGAAGAGGGTATGGAAGTAGCAGAACAGTTGGTAGATTTCCTAGGATCTATGTAATTATGGTTTTAGCTTGTAACTTTTTGGAGGTAGCCAGCATACCCTTAATGCTGAAGAATACAACTTTAACATTTTTAAAAAAGAAAAGAAAAGTGGTAACATATGAAAAAATACTATTATTGACGTGTGTGACCACCTCATCTAAAAGCCTATGCTGCTAGAGAGTTCACACTTTTGTTTACTTCGATACATCTTCAACACGCTCCTTCACGTGCATGTTTGATTCATTTACCAAGCGTGTGGAAACTCATTTTGATAATGGGTAGCGGTGAATGGGAGTTTAGTGCACCGGATTGCTTTTTAATGGGTGACCGTGAGACTTGAGCATCGGATGATACCAGATTAAAGTGTGTGACAATCTCATCTAAGATCATCTCCAACCCAACACTATTTTCGTGTGTGAATAGTGTCGCATCAAATTTAGTGTGACACTATTCATCACTTCTTCATTATTTTAATATTATTATTATTATATAACATTTTTGAAAATGTAAATGAAATAAAAATAATTATATCATATTGAAGAGAGAAAAAATATAAAGATAATATTTCTTCTTAGAGTAAAAGTTTGGTGTTCTGGGTTGGAGATGCCCTAGAAGTCGAAGCTGCTAGAGAATTTATTTACTGAATCATATCTCCAACCATGAAAAAAAATGTTTTACTTAAAAAAAGCAAAAAAGAAACCGAGTGTTTGCGAGCATTTCTTTTGTATGAGACATCAACAATTCCTCAGTCTCAAATGATTTGAGAGAAGCTATATAAATCCTCATTGACCATATTTTTCCATTTAATGCTTCTCTGTACTCCCTACTTTTATTTATGTATGACGACCTCTCGTCTGAAATGAGTATTTTTTCCAGTACCCTCTATCCATGCTTGCACATGTTATTTATTACGTATCATTTAAAGCTCCACACTGTCACCTTTTTAAGGGAATATGTGGTTTCATGTTGTCGAATTGCCTGCAGGCAATCATGTTAGTTCAATTTGTATCCTAGAAACATTCTTGATTAAATACACTGTTGGCAAATTCTGTTTCAGGTATGCACCAAAGATACTTGATAGGTACACTAGTGCAGAAGGCTTTCTATTTCTCCAGGACGATACTATCCTTAATTACTGGAACTTACTTCAAGCAGATAAGTCAAAGCTCTGGATAGGAAACAAGGCAAGTACAAATATGAAGTCCTTATTTTTGGTATTTAGTGGAAGGTTTTTACTAATTGTTACTTAATACAGATTCAGCCAATTCCTACTTTTTATGGCTAAACTAAAGAAATTTACTGTTCACTGGTTTCTTCTGTTGCTTGTACTTCTTGCTGTTATTCAAAGGGAATTTAGGGTAGTATACATAACAACACTCCAAGTGGGTCTGGGTAGGGTGGGATGTAAGCAGACCTTATCCTTAGGGAGGATGTTTCCGATATACCTTCATCTCAAAAGAGAAGTTTTCGAAGCAAGGAAATATGGTAGCAAGATACAAAGCAAGTGAAGTAGCAGATAGTACCACACATTGAAGAATAAGAAACTCCGACTACTAACTACTACTAGTCTACTACTACTAGTAGCAGGGGAGTAGATGAGGCTATCCCCCTGCCTCTCCCACATGAAGTGCGGTAACACTCGGCTACCTACTAACCGTCTACTCTAATCATTGACATCCAGTACATATGTAGAATAATATATGTAAGGTTCTTTATTTCTTTATTCGGCTTGGAGAGGAGATAATGTATATGAAACCCGAGACCATCGTCATGAGGAAAGAGTTCCATCCTATGATATGTTTAGACATAGCTTGAGTTTTTTACTTGTGGTTAAAGCGCACTTGCTTGATCATCCAACTGCCTCCAGGGAGAGAGGGAAAAGGGATTTTTTTTGTAAGTTCTTAATTTATTGTTGCAAATGATCAACTCTCAAACCTGTCCTACCCAAATACACAAGCAATAGGCGTCTCATTTCTTTCTTTTGCGTATAGGTATCCAAGTCATGGCACGCTGTTCCAGTAGCTAACAAATCGGACTGGTTTGTGAAGCAAGCTGACGTTGTTAAGAAAGTGGTAGCAACAAT</genome_strand>
        <mrna_strand>GTTTAACAAAGTTTTTGGTAGCGTGGAGATCCAGTAAACACAGGTTGTTTGAAAAGATTTTGGAGTTAAGCTATGCAATGGCTGAAGAAGGCTTTTGGACAGTGCAAGATGTCAAGTTCACTGCTGCATGGCTTCAAGATCTGCTTGCTGTTGGGTACATGCAGCCTCGGCTAATGGCTTTAGAGTTGGATCGGCCAAGGGCAAGCATAGGACATGGTGACAGGAAGGAATTTGTACCTCAGAAGTTGCCATCTGTGCATCTTGGGGTAGAAGAGATTGGTACAGTGAATTATGAAATCGCCAATTTGATTAAGTGGAGGAAGAATTTTGGCAATGTTGTGCTCATAATCTTTTGTAGTGGACCTGTTGAACGTACTGCCTTGGAGTGGAGATTACTATATGGCAGGATATTTAAGACAGTTATCATATTGTCTGACCAGAAGAATGTAGATCTTGCCGTTGAAAAAGGAAATTTGGATTATATGTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCACCAAAGATACTTGATAGGTACACTAGTGCAGAAGGCTTTCTATTTCTCCAGGACGATACTATCCTTAATTACTGGAACTTACTTCAAGCAGATAAGTCAAAGCTCTGGATAGGAAACAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCAAGTCATGGCACGCTGTTCCAGTAGCTAACAAATCGGACTGGTTTGTGAAGCAAGCTGACGTTGTTAAGAAAGTGGTAGCAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327024" ref_strand="+" ref_description="SGN-U327024        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain PF03385: Protein of unknown function, DUF288 | chr2:17431436-17434360 REVERSE | Aliases: T11A7.13, T11A7_13(evalue: 3e-51, score=199) genbank/nr: gi|18405801|ref|NP_565960.1| expressed protein [Arabidopsis thaliana] gi|25408755|pir||H84845 hypothetical protein At2g41770 [imported] - Arabidopsis thaliana gi|2335100|gb|AAC02770.1| expressed protein [Arabidopsis thaliana] gi|15810461|gb|AAL07118.1| unknown protein [Arabidopsis thaliana](evalue: 2e-49, score=199)">
      <seq>aataagaaactccgactactaactactactagtctactactactagtagcaggggagtagatgaggctatccccctgcctctcccacatgaagtgcggtaacactcggctacctactaaccgtctactctaatcattgacatccagtacatatgtagaataatatatgtaaggttctttatttctttattcggcttggagaggagataatgtatatgaaacccgagaccatcgtcatgaggaaagagttccatcctatgatatgtttagacatagcttgagttttttacttgtggttaaagcgcacttgcttgatcatccaactgcctccagggagagagggaaaagggattttttttgtaagttcttaatttattgttgcaaatgatcaactctcaaacctgtcctacccaaatacacaagcaataggcgtctcatttctttcttttgcgtataggtatccaagtcatggcacgctgttccagtagctaacaaatcggactggtttgtgaagcaagctgacgttgttaagaaagtggtagcaacaatgccggtacatttgcaagtcaattacaaagagacaatgagaagtgacgagaccttgacgatatgcagttcggagatattctacataccccgtcgttttgtatccgactttgtcgacctcattaatctagtagggaatctagacgtgcatcacaaggttgcaatgccaatgttttttacggctatggattctccacagaatttcgattcagtattgaattcgatgatttacaagaagaagtctcctggcaatttaacgacattctattcagctgaggcacctgcaattcacccatggaaagtgtcaagtgagcaagagttcataaaactgatcagagttatggctgcaggtgaccccctgttaatggagttggtatagtgtaatgatagatacttgaagagtctcacagtgaaaatgtaaaacatgtaaagtttatgtgcagctgaattctactattcttttgtacctttcattagtagggggggaatggggtgaaagaagaggttttgtgctcttgtagatttttgttgtaatactgttttaactcttaaaaattttgtggcaaagagaattgaaggagaaaacagtgcaggctttcttctgattttcattttgcttttgaatacgttttgtttctaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="71047" stop="72838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71347" g_stop="72538" g_length="1192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1193" r_length="1193" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-U327024" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1192</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71347" e_stop="72538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAGAAACTCCGACTACTAACTACTACTAGTCTACTACTACTAGTAGCAGGGGAGTAGATGAGGCTATCCCCCTGCCTCTCCCACATGAAGTGCGGTAACACTCGGCTACCTACTAACCGTCTACTCTAATCATTGACATCCAGTACATATGTAGAATAATATATGTAAGGTTCTTTATTTCTTTATTCGGCTTGGAGAGGAGATAATGTATATGAAACCCGAGACCATCGTCATGAGGAAAGAGTTCCATCCTATGATATGTTTAGACATAGCTTGAGTTTTTTACTTGTGGTTAAAGCGCACTTGCTTGATCATCCAACTGCCTCCAGGGAGAGAGGGAAAAGGGATTTTTTTTGTAAGTTCTTAATTTATTGTTGCAAATGATCAACTCTCAAACCTGTCCTACCCAAATACACAAGCAATAGGCGTCTCATTTCTTTCTTTTGCGTATAGGTATCCAAGTCATGGCACGCTGTTCCAGTAGCTAACAAATCGGACTGGTTTGTGAAGCAAGCTGACGTTGTTAAGAAAGTGGTAGCAACAATGCCGGTACATTTGCAAGTCAATTACAAAGAGACAATGAGAAGTGACGAGACCTTGACGATATGCAGTTCGGAGATATTCTACATACCCCGTCGTTTTGTATCCGACTTTGTCGACCTCATTAATCTAGTAGGGAATCTAGACGTGCATCACAAGGTTGCAATGCCAATGTTTTTTACGGCTATGGATTCTCCACAGAATTTCGATTCAGTATTGAATTCGATGATTTACAAGAAGAAGTCTCCTGGCAATTTAACGACATTCTATTCAGCTGAGGCACCTGCAATTCACCCATGGAAAGTGTCAAGTGAGCAAGAGTTCATAAAACTGATCAGAGTTATGGCTGCAGGTGACCCCCTGTTAATGGAGTTGGTATAGTGTAATGATAGATACTTGAAGAGTCTCACAGTGAAAATGTAAAACATGTAAAGTTTATGTGCAGCTGAATTCTACTATTCTTTTGTACCTTTCATTAGTAGGGGGGGAATGGGGTGAAAGAAGAGGTTTTGTGCTCTTGTAGATTTTTGTTGTAATACTGTTTTAACTCTTAAAAATTTTGTGGCAAAGAGAATTGAAGGAGAAAACAGTGCAGGCTTTCTTCTGATTTTCATTTTGCTTTTGAATACGTTTTGTTTCT-ACAGAGAAA</genome_strand>
        <mrna_strand>AATAAGAAACTCCGACTACTAACTACTACTAGTCTACTACTACTAGTAGCAGGGGAGTAGATGAGGCTATCCCCCTGCCTCTCCCACATGAAGTGCGGTAACACTCGGCTACCTACTAACCGTCTACTCTAATCATTGACATCCAGTACATATGTAGAATAATATATGTAAGGTTCTTTATTTCTTTATTCGGCTTGGAGAGGAGATAATGTATATGAAACCCGAGACCATCGTCATGAGGAAAGAGTTCCATCCTATGATATGTTTAGACATAGCTTGAGTTTTTTACTTGTGGTTAAAGCGCACTTGCTTGATCATCCAACTGCCTCCAGGGAGAGAGGGAAAAGGGATTTTTTTTGTAAGTTCTTAATTTATTGTTGCAAATGATCAACTCTCAAACCTGTCCTACCCAAATACACAAGCAATAGGCGTCTCATTTCTTTCTTTTGCGTATAGGTATCCAAGTCATGGCACGCTGTTCCAGTAGCTAACAAATCGGACTGGTTTGTGAAGCAAGCTGACGTTGTTAAGAAAGTGGTAGCAACAATGCCGGTACATTTGCAAGTCAATTACAAAGAGACAATGAGAAGTGACGAGACCTTGACGATATGCAGTTCGGAGATATTCTACATACCCCGTCGTTTTGTATCCGACTTTGTCGACCTCATTAATCTAGTAGGGAATCTAGACGTGCATCACAAGGTTGCAATGCCAATGTTTTTTACGGCTATGGATTCTCCACAGAATTTCGATTCAGTATTGAATTCGATGATTTACAAGAAGAAGTCTCCTGGCAATTTAACGACATTCTATTCAGCTGAGGCACCTGCAATTCACCCATGGAAAGTGTCAAGTGAGCAAGAGTTCATAAAACTGATCAGAGTTATGGCTGCAGGTGACCCCCTGTTAATGGAGTTGGTATAGTGTAATGATAGATACTTGAAGAGTCTCACAGTGAAAATGTAAAACATGTAAAGTTTATGTGCAGCTGAATTCTACTATTCTTTTGTACCTTTCATTAGTAGGGGGGGAATGGGGTGAAAGAAGAGGTTTTGTGCTCTTGTAGATTTTTGTTGTAATACTGTTTTAACTCTTAAAAATTTTGTGGCAAAGAGAATTGAAGGAGAAAACAGTGCAGGCTTTCTTCTGATTTTCATTTTGCTTTTGAATACGTTTTGTTTCTAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334633" ref_strand="-" ref_description="SGN-U334633        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH), nearly identical to magnesium chelatase subunit GI:1154627 from (Arabidopsis thaliana); contains Pfam profile: PF02514 CobN/magnesium chelatase family protein | chr5:4387337-4392230 REVERSE | Aliases: T6I14.12(evalue: 5e-23, score=105) genbank/nr: gi|2318137|gb|AAB97152.1| Mg protoporphyrin IX chelatase [Nicotiana tabacum] (evalue: 2e-21, score=105)">
      <seq>acaaatcccaattctttcaggaagttgcttcaaacattcttaaagggcaacgggcgtggaaactgggatacttcttaagggaacattaagaaactcaagcaattgtactcagaagtcgaaaacacgattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattaatgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctaatgtgaattcctttgatagtccccagtggaatttttgttcatcttttggggatgtctttctacttctatgagaaaaattctgcttccatatgttcccctaaaaaaaaaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="73600" stop="15757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73300" g_stop="72974" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72973" i_stop="72528" i_length="446">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.872" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72527" g_stop="72496" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="359" r_length="32" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U334633" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334633" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73300" e_stop="72974"/>
          <exon e_start="72527" e_stop="72496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAAATTTGATCTTGAAAGTTGCAACTGCCTTCATGCTCTAATTTTTTCTTTGTTTTTCCCACCTGTGATGAGCAGTACCCGCTCTCTAAGGCCTAACTAATTTGGAATCGCGTCAGAAAGTCCCACTTTGAAACGAATGAGTATTTCAGCAAAACAAACGCTGAAATGCCCATATACAAGATGTATACCAAAAAGATGAAAACCTACAAAAGGAAACTCAAGTATCTTCAATAATGCACTTCGAAGATCTTCAAATCGAGTATGTATTGAAGGGACGTCAAGGGTGTGCTCTCTCTAACAACTTTAAATTTTTCGATCAGATGTCCCATGACTGCTGTTTTGGGACATTTGTAGACATCTCTTGGACACATCAAGATGAGAAGTGTTCAACCAATCTTGATTTATCATATGTAAGAAACTGAAGATGTATAAAAGATTTCTCTGTAGAAACAAAACGTATTCAAAAGCAAAATGAAAAT</genome_strand>
        <mrna_strand>ACAAATCCCAATTCTTTCAGGAAGTTGCTTCAAACATTCTTAAAGGGCAACGGGCGTGGAAACTGGGATACTTCTTAAGGGAACATTAAGAAACTCAAGCAATTGTACTCAGAAGTCGAAAACACGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTAATGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTAATGTGAATTCCTTTGATAGTCCCCAGTGGAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATTCTGCTTCCATATGTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTAAAAAAAAAACAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313864" ref_strand="+" ref_description="SGN-U313864        Tomato 200607 #1 [53 ESTs aligned] arabidopsis/peptide: | Symbol: None | magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH), nearly identical to magnesium chelatase subunit GI:1154627 from (Arabidopsis thaliana); contains Pfam profile: PF02514 CobN/magnesium chelatase family protein | chr5:4387337-4392230 REVERSE | Aliases: T6I14.12(evalue: 0, score=1296) genbank/nr: gi|2318137|gb|AAB97152.1| Mg protoporphyrin IX chelatase [Nicotiana tabacum] (evalue: 0, score=1354)">
      <seq>tgatgcagttctccactttggtactcatggttctcttgagttcatgccaggaaaacaggtgggaatgagcgatgcatgtttcccagatagtctcattggaaacattccaaatgtctattactatgcagcaaacaatccatccgaagcaactattgccaaacgaaggagttatgcaaataccattagctacttgactccccctgctgagaatgccggactctacaagggactcaagcagcttagtgagctcattgcttcgtaccaatcactgaaagactcaggtcgtggccctcagattgtgagctctatcattagtactgctagacagtgtaatcttgacaaggacgttgatcttccagatgaagagaaggaaatagatgccaaagaacgtgaccttgtggtaggaaaagtatatgctaagattatggagattgagtctcgtcttctgccctgtggacttcacatcattggtgaacctccaaccgccatggaggcagttgccactcttgtcaacattgctgcattggaccgtgctgaagatgatatttcttcccttccatctattctggctgccacagttggcagaaatattgaggagatctatcgaggaaatgacaatggagtcttgcgagatgtggagctgcttcgtcaaattactgaggcatcacgtggagcaatatcagccttcgttgaacgctcaaccaacaacaagggtcaggttgttgacaattctgacaagctgacctcactccttggtttttctattaatgaaccatggatccagtatttatcaaacacccaattctacagagctgatagggaaaagctcagagtcctgtttcagttcttgggagagtgtctgaagctaattgtggctaataacgaggtgggaagtttgaaacaggctcttgaagggaaatatgttgaaccaggtcctggaggggatccaatcagaaatccgaaagttttgcctacagggaaaaacatccatgctttggacccacaggctattcccacaacagcagcactgcagagcgccaagatagtggttgaaagattgttggagaggcaaaagattgacaacgggggcaagtacccggaaactgttgctctggtgctttggggaacagataacatcaagacttatggagagtcgttggcacaggttatgtggatgattggtgttaggccagttgcagacacacttggacgcgttaaccgagtggaaccagttagtcttgaagagcttggaaggcctagagttgatgttgttgtcaactgctccggggtgttcagggatctcttcatcaatcagatgaatctccttgaccgaggaatcaagatggttgctgagcttgatgaaccggaagaccaaaactttgtcaggaaacatgcactagaacaggcaaaaacactcggaattgatgttcgtgaagcagctactagggtcttctcaaacgcttcgggttcttactcttccaacatcaacctagctgttgagaactcatcatggaacgacgagaagcaacttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttgatagtccccagtgtaatttttgttcatcttttggggatgtctttctacttctatgagaaaaatactgcttccatatgttcaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="75822" stop="72671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75522" g_stop="74208" g_length="1315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1315" r_length="1315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74109" g_stop="73633" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1316" r_stop="1792" r_length="477" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73531" g_stop="72972" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1793" r_stop="2352" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2353" polyA_stop="2378"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U313864" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2352</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75522" e_stop="74208"/>
          <exon e_start="74109" e_stop="73633"/>
          <exon e_start="73531" e_stop="72972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCAGTTCTCCACTTTGGTACTCATGGTTCTCTTGAGTTCATGCCAGGAAAACAGGTGGGAATGAGCGATGCATGTTTCCCAGATAGTCTCATTGGAAACATTCCAAATGTCTATTACTATGCAGCAAACAATCCATCCGAAGCAACTATTGCCAAACGAAGGAGTTATGCAAATACCATTAGCTACTTGACTCCCCCTGCTGAGAATGCCGGACTCTACAAGGGACTCAAGCAGCTTAGTGAGCTCATTGCTTCGTACCAATCACTGAAAGACTCAGGTCGTGGCCCTCAGATTGTGAGCTCTATCATTAGTACTGCTAGACAGTGTAATCTTGACAAGGACGTTGATCTTCCAGATGAAGAGAAGGAAATAGATGCCAAAGAACGTGACCTTGTGGTAGGAAAAGTATATGCTAAGATTATGGAGATTGAGTCTCGTCTTCTGCCCTGTGGACTTCACATCATTGGTGAACCTCCAACCGCCATGGAGGCAGTTGCCACTCTTGTCAACATTGCTGCATTGGACCGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAGGTATTGGTCTATCCTCCTTTTCCACTGATTCTGCACTGGATTGGTACATTAGTGCAATGTCAGATCATTACTTATCATTTGTTTTGTTTTGTATACAGATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAA</genome_strand>
        <mrna_strand>TGATGCAGTTCTCCACTTTGGTACTCATGGTTCTCTTGAGTTCATGCCAGGAAAACAGGTGGGAATGAGCGATGCATGTTTCCCAGATAGTCTCATTGGAAACATTCCAAATGTCTATTACTATGCAGCAAACAATCCATCCGAAGCAACTATTGCCAAACGAAGGAGTTATGCAAATACCATTAGCTACTTGACTCCCCCTGCTGAGAATGCCGGACTCTACAAGGGACTCAAGCAGCTTAGTGAGCTCATTGCTTCGTACCAATCACTGAAAGACTCAGGTCGTGGCCCTCAGATTGTGAGCTCTATCATTAGTACTGCTAGACAGTGTAATCTTGACAAGGACGTTGATCTTCCAGATGAAGAGAAGGAAATAGATGCCAAAGAACGTGACCTTGTGGTAGGAAAAGTATATGCTAAGATTATGGAGATTGAGTCTCGTCTTCTGCCCTGTGGACTTCACATCATTGGTGAACCTCCAACCGCCATGGAGGCAGTTGCCACTCTTGTCAACATTGCTGCATTGGACCGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG..................................................................................................ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334635" ref_strand="-" ref_description="SGN-U334635        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH), nearly identical to magnesium chelatase subunit GI:1154627 from (Arabidopsis thaliana); contains Pfam profile: PF02514 CobN/magnesium chelatase family protein | chr5:4387337-4392230 REVERSE | Aliases: T6I14.12(evalue: 7e-112, score=400) genbank/nr: gi|2318137|gb|AAB97152.1| Mg protoporphyrin IX chelatase [Nicotiana tabacum] (evalue: 2e-114, score=414)">
      <seq>cccccgggctgcaggttcaagacatgtacttgagccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatgatctctgattattgtttgtttctgctacaggataataagatcctttctgcttcctaacaatttctgatgtgaattcctttgatagtccnccagtgtaatttttgttcatcttttggggatgtctttctacttctatgagaaaaatactgcttccatatgttcaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74206" stop="72671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73910" g_stop="73633" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73531" g_stop="72972" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="839" r_length="561" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="840" polyA_stop="860"/>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U334635" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334635" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73910" e_stop="73633"/>
          <exon e_start="73531" e_stop="72972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCC-CCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAA</genome_strand>
        <mrna_strand>CCCCCGGGCTGCAGGTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCNCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334634" ref_strand="+" ref_description="SGN-U334634        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH), nearly identical to magnesium chelatase subunit GI:1154627 from (Arabidopsis thaliana); contains Pfam profile: PF02514 CobN/magnesium chelatase family protein | chr5:4387337-4392230 REVERSE | Aliases: T6I14.12(evalue: 4e-68, score=254) genbank/nr: gi|2318137|gb|AAB97152.1| Mg protoporphyrin IX chelatase [Nicotiana tabacum] (evalue: 9e-67, score=256)">
      <seq>agcaatatcagccttcgttgaacgctcaaccaacaacaagggtcaggttgttgacaattctgacaagctgacctcactccttggtttttctattaatgaaccatggatccagtatttatcaaacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcaggaagttgcttcagacattcttggaggccaacgggcgtggatactgngatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagaccagattgaaggaatagaccgataaatgtatagctaaatatatgatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="75150" stop="72828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74850" g_stop="74727" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74726" i_stop="73654" i_length="1073">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73653" g_stop="73633" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="145" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73531" g_stop="73128" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="549" r_length="404" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U334634" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74850" e_stop="74727"/>
          <exon e_start="73653" e_stop="73633"/>
          <exon e_start="73531" e_stop="73128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAGGTATTGGTCTATCCTCCTTTTCCACTGATTCTGCACTGGATTGGTACATTAGTGCAATGTCAGATCATTACTTATCATTTGTTTTGTTTTGTATACAGATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTG</genome_strand>
        <mrna_strand>AGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGNGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACCAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334636" ref_strand="+" ref_description="SGN-U334636        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH), nearly identical to magnesium chelatase subunit GI:1154627 from (Arabidopsis thaliana); contains Pfam profile: PF02514 CobN/magnesium chelatase family protein | chr5:4387337-4392230 REVERSE | Aliases: T6I14.12(evalue: 4e-107, score=384) genbank/nr: gi|2318137|gb|AAB97152.1| Mg protoporphyrin IX chelatase [Nicotiana tabacum] (evalue: 1e-109, score=399)">
      <seq>ctttggcacaggttatgtggatgattggtgttaggccagttgcagacacacttggacgcgttaaccgagtggaaccagttagtcttgaagagcttggaaggcctagagttgatgttgttgtcaactgctccggggtgttcagggatctcttcatcaatcagatgaatctccttgaccgaggaatcaagatggttgctgagcttgatgaaccgaaagtcatttgcatttgactgtgatgctcctggtgctggcatgatggagaagaggaaagtttttgagatggctctaagcacagctgatgccacgttccagaacctcgactcatcagaaatttcactcacagacgttagtcactacttcgattcagatccaaccaacctcgttcagaacctcaggaaggatggcaagaaacctagtgcatacattgctgacaccactactgctaatgctcaggtacgtacgttgtctgagactgtgaggctagatgcaaggacaaagttgttgaaccccaagtggtatgaaggcatgctgtccactggctacgagggtgttcgtgagattgagaaacgattgaccaacacagtggggtggagtgcaacttcaggccaagttgacaattgggtgtatgaagaagccaacacaacattcatcaaagatgaagagatgttgaacaggcttatgaacacaaatccaaattctttcangaagttgcttcagacattcttggaggccaacgggcgtggatactgggatacttctgaagagaacattgagaaactcaagcaattgtactcagaagtcgaagacaagattgaaggaatagaccgataaatgtatagctaaatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="74668" stop="72835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74368" g_stop="74208" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74109" g_stop="74062" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="209" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74061" i_stop="73877" i_length="185">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73876" g_stop="73633" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="453" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73531" g_stop="73135" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="850" r_length="397" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U334636" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74368" e_stop="74208"/>
          <exon e_start="74109" e_stop="74062"/>
          <exon e_start="73876" e_stop="73633"/>
          <exon e_start="73531" e_stop="73135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAGGTATTGGTCTATCCTCCTTTTCCACTGATTCTGCACTGGATTGGTACATTAGTGCAATGTCAGATCATTACTTATCATTTGTTTTGTTTTGTATACAGATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAGGTGAGTGTTATCACTTGATGGATGACTTGAAAGATGTTAACTCATGAAGTTGATAGAGGTCGTTTATTTTATGCCTAATGCCTCTATCTGTGATGATTCAGGTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATG</genome_strand>
        <mrna_strand>CTTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG..................................................................................................ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAA.........................................................................................................................................................................................CCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG.....................................................................................................GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCANGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326505" ref_strand="+" ref_description="SGN-U326505        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:17429848-17432066 FORWARD | Aliases: T11A7.14, T11A7_14(evalue: 4e-69, score=258) genbank/nr: gi|18405798|ref|NP_565959.1| expressed protein [Arabidopsis thaliana] gi|25408753|pir||G84845 hypothetical protein At2g41760 [imported] - Arabidopsis thaliana gi|2335101|gb|AAC02771.1| expressed protein [Arabidopsis thaliana] gi|14335092|gb|AAK59825.1| At2g41760/T11A7.14 [Arabidopsis thaliana] gi|16974507|gb|AAL31163.1| At2g41760/T11A7.14 [Arabidopsis thaliana](evalue: 3e-67, score=258)">
      <seq>aaaaatgtcttcaaatttggaattggaagtgaggtcttcagctacagttccttctctgcaagttccaacctttcatcataccccttattattgtgaggaaaacatctacctgctatgcaaaaagctatgtgatgacggactggcagatcctaatggttctgatctgtttgttattttcatttccaatgagaagaagcagattcctctgtggcatcagaaggctagccagcgagcagagggagttattctgtgggactatcatgtcatctgtgtacagaagaagagaaatgagaactcttcgtcactagtgtgggatttagattcaagtcttccgtttccatcatctcttggcacttatgtcgctgacagcattcgtccatcaattcagatattttctgaattcaaaaggttttttcgagttgtgcatgcccctatattcctccgacacttcgcatcagatagaagacatatgaaggattctgctggaaactggactgcagacccgccatcatatgaagctattgttgctgaagatggagctgtacacaacctgaacgagtacattacagtctctcccgatgatgtagtgaagaatgtggaagctgataccgtcaatgttgttctctccgagaaacttggtgtagtaattggtgaagatgatttgttgggatttttctctttgatttcctgatgagagttgagaaaaaacttgctagcttgaaagatgaaatgatgatcttggatttttacatgtaaaaagaaaaagaaagtgtcttgtgagagtttttgcaaatggaatggaaaatattcttgtgttagacaagttcttgtttttggggagttattttattttatagaacttgtatagacattttgatgcccgaccccgtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="90402" stop="84467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90102" g_stop="90010" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90009" i_stop="87341" i_length="2669">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87340" g_stop="87235" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="199" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87234" i_stop="86673" i_length="562">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86672" g_stop="86595" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="277" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86594" i_stop="86473" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86472" g_stop="86342" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="408" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86341" i_stop="85877" i_length="465">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.292" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85876" g_stop="85752" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="533" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85751" i_stop="85128" i_length="624">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85127" g_stop="84767" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="894" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U326505" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90102" e_stop="90010"/>
          <exon e_start="87340" e_stop="87235"/>
          <exon e_start="86672" e_stop="86595"/>
          <exon e_start="86472" e_stop="86342"/>
          <exon e_start="85876" e_stop="85752"/>
          <exon e_start="85127" e_stop="84767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGTCTTCAAATTTGGAATTGGAAGTGAGGTCTTCAGCTACAGTTCCTTCTCTGCAAGTTCCAACCTTTCATCATACCCCTTATTATTGGTACATTCTCTCTCTCTCTCTCTCTGTGCTTTTTTGGGGGTGGAGGGGTATGTGTGTGTATAGATTCTTGAATGATAGACATAGCTGATGATGATTACTGTTTGTTTATGAAATTTGATGCATAATTGAGGATACCCGTTTCATTTGAAGACCTAATTAAGTTAGAATTGGTACTCTGTGTGTGTGTGTGTTTGCCTTTTTAAGGGGTGGGGCGTGTAAAAATGCATTCTTGAAATACAGATACAGCTGGTGATTACTGTTGTTTGGGGTGGGGTGGGGGGAGGTGGGGGTGTGTAAAAATGCATTCTTGAAAATACAGACATTGCTGGTGATTGGGCGGTGGGGGTGGGGCCGTGGGGGTGTGTAAAAATGCGTTCTTGAAATACAGACACAACTGGTAATTATTGTCGTTTGGGAGGGAGGTGGGTGGTGCTGTTTAAAAATGCGTTCTTGAAATATAGACATAGCTGGTGATTACTGATGTGTAACACCAGTACATTTGGAATTGGTAGTCAGTCCTATTTCCGGTAGGGGCAGTTGTCAATTGAATCAGATTTTGACCATTATTTTGATGTATGTAATAGTGCGAAAAGTAGAGCCAGCTCCAAGTTGTTCCGTTGAGTTTCTCGACCCTTTGGCTGAGGATGAGTCAGTTCTATTTCTCGATGTGGCAGGGAAGGGATATTTGTTTTGGGGTGCGGATGTGTAAATGCATTCTTGAAATACAGACATAGCTGGTGACTACTGTTATTTGGAGAGAGGTGTGGGGGAGGAGGTGGGACATAGTTGGTGATTACTGTTTGATTATGAAATCTGATGTACAAATGCTGATACCCTTTTCGTTTAAAGACATAATTTAAGCAAATTCTACAGCTGACCAGTTTTAGATCCACAATCACTACAACATACCGTATGAAATCCCACAAGTGGGGTCTAGGGAGGATAGAGTGTACCAGTCCTTACTCCTACCTCGTGTAGGTAGAGATGTTGCTTTTGAAAGACCCTCTGCTCAAGTGTAGCAATTCAAACTATTTATGGAAAGAAAAAAAGCTATAGGGAAGAAAACATGGCAACTAAAAAGGAAAGAAGTGCAGAGCATACAAGAAAAGAACAGTAACAACAATAGGATAGTGCGATAAGCAAAACACAATAAACAACTGTTGATGATAGATATCAAAAGCAAGCAACTACAAGCTTACAATTAATACTACAATAGACACCGCCAAGCCTAAACCTGTCGAAAAGCAAGACAATGCTCCACAACATACTCTTTTGTTATGTAGTATGAAAATATACATGAAATTTGGTGCAGGAAAGATTGTACGGGCGCCATTTTGTACAAAAAATGTTTGTGGAGTTTGTAGTTGAGCCAAATTTTTTTTGGTAAATGTCAATTAATGAAAGGATTTAGTCTTCGTTTGCTTCAGTAAGGTGTTACTTTGGTAGGCTGAACTGATTTAGCTGATGGCTTTTGTTCGGGGAAAGGGAGAGCTTTATTAAGTAATTTCATGATTTTTACAAATATCTGGTAATTTTGAACTGAACTTATCTAATGAGAATTCAAGATATGAATTTGGAACTTGTTAATTGTTTATTTGGTAAAAGCAATACTGAATGAGTAAAGAGAAAAAGAACTTGGCAATCTATGATTCATAGTATTTTTTTCCTTATTGATCTTTTTGAATTCCATATTCGAAGTTGCGATCAGATCTATAACAAAAAGAATCAGTTCAATATATTTCGTATGTATTCATAGGTAATATATTGGATTTGTATCAAATTTCGGATCAATCTATGTTGAGTGATTGCCTTCATTATGTAGTTGCTACCAAGTACCACTATTTTGGTTTTGGATCTTCAAATCCTTCGCGTAGGAGATCCAAACCCATTTTTTAATCCTTTGAGAAAAATATTCATTCTCTTCCTAAAAGTAGGACGTAGAAGCAACAAAGATTTTTTTTTCTATTCATCCTTGACCTCACTCAAGAATTGTTTTTATCCAATCCGCAGGAATTGATAGAAAAGGCAAATCATGTATAATACACCGGATCCGGCTCAGTTATTAATAGAGTGAATAGATATTGAAAACTTTCTTCTGATTCAAAATCATAGTGTAACGTGTATCCTCCCCTGTAACAAAAAATTGATTTTTGTTCAAGAATGAAATCTTATTGGAACTATCCACATCTAGTTCATCCTTTGGAACCATATCACATCCTGGAAATGATGAAATAGGATGATTGAGACGGTATTTTGTAAATATGTAATTATCTTGAATATATTAACCATTTCTTTATTTTGGGATCGCCTGGAAGGGACAAAAGAAAGATCTTGTTGTTTCTTTAACTTGGAGTATCTCTATGAGCATATTCCTGCAGAAATGCTTCGCCTGTGACCTGTCCTAAAGATAAATGTTCATAAAGAAAAGGGAACTTTTGAAATGAATCTATTTATGTAGAATTATTCAACTTAAGTACTTCCCTTTTCAAATTTGACATGTCTGTTTTTATTTCCATTCACATTAAGCTTGCTTACTGAATATATAGAGGGTTCATATATTTGACTCGGGTTGATCTTGATTTGAGGCATAGTTGATTGATTGAGAAAAATTACTTGCACTAACAATAAGTATTCTTCTGTTTGCTTTCTGTATTTACTTTCTATTACAGTGAGGAAAACATCTACCTGCTATGCAAAAAGCTATGTGATGACGGACTGGCAGATCCTAATGGTTCTGATCTGTTTGTTATTTTCATTTCCAATGAGAAGAAGCAGGCAACTACTCTTTGCTCTTCCTTTGGTTACTGTCTTAAGAAGTTCATTCATTGCATTGATACTTCATCTCAATGAAAATGATAGTAGTATAATATCTGTTCCTCTACTAGTAATGGTAATGCCGTAATGTATTGCGTTAAACTAACAAATGGTTAGATGGATAACAAAATAATGTGAACTGCAAGCCTTTGTTTGCAAACGGGATGTACTAACGTTTAGAACTTAATCTTTCAAATTTTGTTTACCATTTGATAATTCTTTGTAATGCATTAATCAGTTCAGTTTTATCTCCCTGTCCCCAATACAGCAAAGTAAAAGGATGAAGGGAAGTTCATGTTTGAATGGATCTGAAAATGGTCCAGGACACTTAAATAAGTTAAAGATAAATTGGACGTGAACAGTCTTCAAAACTAAATCGATTCAATACTATGAGTCCGTTTCTAGTGTATAATGATTTTCTAACTTAGTTGTTTGAATAAGGAGAGCGACAGAATGGCTGACAGTTAAGTTGTACCTAGCATAATGTTTTTGGGGATGTTAATTTATAATTATATGCTTTCAGATTCCTCTGTGGCATCAGAAGGCTAGCCAGCGAGCAGAGGGAGTTATTCTGTGGGACTATCATGTCATCTGTGTACAGGTTAGATTAACCTACTGTTGTCTAGTATAAACTGAAAATGGTTAACTATATGGTTTTTATTTTTCTCTACTATAGCTATTGGGATTTCATGTCCTTGAGAAAATCTGTTTGGATGCTTGCAGAAGAAGAGAAATGAGAACTCTTCGTCACTAGTGTGGGATTTAGATTCAAGTCTTCCGTTTCCATCATCTCTTGGCACTTATGTCGCTGACAGCATTCGTCCATCAATTCAGATATTTTCTGAATTCAAAAGGTAATAACTGTTCTAGCCCCAAAAAAGAAACATGATTTCTTGAATTTTTTGCTCTTAAACGATGAAGAACTGTTATTTCATTTTCTTTTATAGAAGCTAGATATTTCATTTTTGCTCAAATTATAAGATTCTTGATATAGTGATACAAAAGTAGTTCTATTGCTCTTCTGTGTATTGTTTTTCTCCATTCCTTCCTGAAGTCAACCCAACCTTAAAATGTTTCTAACTTTTCGTAAAATTTATGCTCTACCTAGTGAATCTCATTTTTTGTTTATCTTTAAAAATTGATTTCACAAGTCCACCCTAAAGGGGTGGTCTCATTAAAGAAATGCTCTTTCACTGACCTTTTTCTGAAGAAGAAACCAGAGTATGTTTTTCTTCTGGTGCTAAGCAATGTTGCCAACCTTGTGCTTGGAATAATAAGCTTACTGCAACCACATGAAAGAACAACTTTGGCCATTTCAGGTTTTTTCGAGTTGTGCATGCCCCTATATTCCTCCGACACTTCGCATCAGATAGAAGACATATGAAGGATTCTGCTGGAAACTGGACTGCAGACCCGCCATCATATGAAGCTATTGTTGCTGAAGGTAAATGCAGGAAATAAAAGTTTGCAAGATTATGCTTTTGTCATTTGTTGGTACATTTGGTATATAAAGATAACTTTGTTCCTTCGATTAATATTTTTATCCCGTAACTACTCAAATGCCGTCTCTAATTTGATTATTCTTTTGTTATTTTTGCCAAAGTTCATCAATTTCATGATAAATATCTCGATAAGGAATGACATTTTTGCTTGATAGTCAATTAGTTTGCTCTATATAACCTTTTGATTTGTACACTTAAACAAATTTAGAGGTGGATATCGGTGCATCAAAAATTGAAATACGTGGTTGTATGCCATACCAAACTGACTCGAAGTTCGAATCTCCCCTGCTGGTTTTATTTCCAATTATCTGATCTCATTTTATGTAGTGTCACTTTTCATAGTTAACTTATGGAATAGAACATATAGGAACCAGTAGAACTAAGCCTTTTGAATATATTTTCATTCGTTAAAATTGAATCGAGGAGCACATTTGCATTACCTAATGATATCTGATAGGTGTTTTGTATGATTTTGGGTCATTTGGTACAATTAGTGAGAAAATATGAAACCCTCTCGCTTGCTCTAGTTACGATTTTTGTTTTCATTCTGCCTTTTGCTTGTACAGATGGAGCTGTACACAACCTGAACGAGTACATTACAGTCTCTCCCGATGATGTAGTGAAGAATGTGGAAGCTGATACCGTCAATGTTGTTCTCTCCGAGAAACTTGGTGTAGTAATTGGTGAAGATGATTTGTTGGGATTTTTCTCTTTGATTTCCTGATGAGAGTTGAGAAAAAACTTGCTAGCTTGAAAGATGAAATGATGATCTTGGATTTTTACATGTAAAAAGAAAAAGAAAGTGTCTTGTGAGAGTTTTTGCAAATGGAATGGAAAATATTCTTGTGTTAGACAAGTTCTTGTTTTTGGGGAGTTATTTTATTTTATAGAACTTGTATAGACATTTTGATGCCCGACCCCGTGCAT</genome_strand>
        <mrna_strand>AAAAATGTCTTCAAATTTGGAATTGGAAGTGAGGTCTTCAGCTACAGTTCCTTCTCTGCAAGTTCCAACCTTTCATCATACCCCTTATTATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAAAACATCTACCTGCTATGCAAAAAGCTATGTGATGACGGACTGGCAGATCCTAATGGTTCTGATCTGTTTGTTATTTTCATTTCCAATGAGAAGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCTGTGGCATCAGAAGGCTAGCCAGCGAGCAGAGGGAGTTATTCTGTGGGACTATCATGTCATCTGTGTACAG..........................................................................................................................AAGAAGAGAAATGAGAACTCTTCGTCACTAGTGTGGGATTTAGATTCAAGTCTTCCGTTTCCATCATCTCTTGGCACTTATGTCGCTGACAGCATTCGTCCATCAATTCAGATATTTTCTGAATTCAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTCGAGTTGTGCATGCCCCTATATTCCTCCGACACTTCGCATCAGATAGAAGACATATGAAGGATTCTGCTGGAAACTGGACTGCAGACCCGCCATCATATGAAGCTATTGTTGCTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCTGTACACAACCTGAACGAGTACATTACAGTCTCTCCCGATGATGTAGTGAAGAATGTGGAAGCTGATACCGTCAATGTTGTTCTCTCCGAGAAACTTGGTGTAGTAATTGGTGAAGATGATTTGTTGGGATTTTTCTCTTTGATTTCCTGATGAGAGTTGAGAAAAAACTTGCTAGCTTGAAAGATGAAATGATGATCTTGGATTTTTACATGTAAAAAGAAAAAGAAAGTGTCTTGTGAGAGTTTTTGCAAATGGAATGGAAAATATTCTTGTGTTAGACAAGTTCTTGTTTTTGGGGAGTTATTTTATTTTATAGAACTTGTATAGACATTTTGATGCCCGACCCCGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315285" ref_strand="+" ref_description="SGN-U315285        Tomato 200607 #1 [6 ESTs aligned]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtcctcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtctcgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagaatactcatagtttagtcatttgatcgtagatgttcttgtgatgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="95547" stop="97847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95846" g_stop="96403" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96404" i_stop="96472" i_length="69">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96473" g_stop="97503" g_length="1031"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="1610" r_length="1052" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-U315285" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>1589</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95846" e_stop="96403"/>
          <exon e_start="96473" e_stop="97503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTTGGTGGAGGTAGGTTATGGTTT-TC--ATGCT-TTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGTCTTGGTAAGGGAGAAGGCTTGAAGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCTGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTCGGGGATCGGGTGTCACGAACCGATACGTAGATTTAGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGAGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGGCACATAAATTTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGAAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTA-CCGTGTTTTATACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTTCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTTAGTCGTTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGG----ATA-A---T-AA---T---AGTTATTG-A-T--T-T-TA-TTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGATATTATATTGAAACGTTAAGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTCTTTCGTGCTATTACTTGGGTACAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCGGATGGTTAGACCTAGAGCAACGATTGCGCCAACACCAAC</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGG.....................................................................AGTGTCACGTTCCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCCTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTCGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCATAGTTTAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCA----TTCTTTCTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="96963" stop="97847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97263" g_stop="97547" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97263" e_stop="97547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTC-TTCTTTCGTGCTATTACTTGGGTACAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCGGATGGTTAGACCTAGAGCAACGATTGCGCCAACACCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="99360" stop="97325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99060" g_stop="97625" g_length="1436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>1436</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99060" e_stop="97625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATATGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTGCCATGTTGTGATGTAGTGGCTCATGTTTTCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCTGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATTTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTAT-GGGCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCGGATTGATCATCTCTGGGGTAGGTTGGGATGGAAATTCCTCATTTTGCACGTGTTCATTCTCCCCTTCCTCACCCTCTCT-TACCACTTCCTCAGTTGGTGGAGGAGTCACCGCCCTAGTATCAGACGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="+" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="97947" stop="99955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98247" g_stop="98419" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98420" i_stop="99163" i_length="744">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99164" g_stop="99691" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98247" e_stop="98419"/>
          <exon e_start="99164" e_stop="99691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACTGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGTCGAGGTGATGGGAAAACATGAGCCACTACATCACAACATGGCAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCATATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTTTGGGTATGACTTTGCTTTCTCCACAATTTGCGATCTTGGATTGTAATGCTAAAGCGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTAAGTCGGTTTCGGTGGTTCGTGAGTTTCTGGATGTGTTCCTTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGATTTTTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTGTTGAGGAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGAGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAGATCG--G-CAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="99364" stop="98206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99064" g_stop="98506" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99064" e_stop="98506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATATGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTGCCATGTTGTGATGTAGTGGCTCATGTTTTCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335939" ref_strand="+" ref_description="SGN-U335939        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-47, score=191)">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="99747" stop="98605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99447" g_stop="98905" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U335939" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99447" e_stop="98905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCCAGAAACTCACGAACCACCGAAACCGACTTAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGCTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCAAAGTCATACCCAAAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATATGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="99974" stop="98617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99674" g_stop="98917" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99674" e_stop="98917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTCCTCAACAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAAAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGAACCACCGAAACCGACTTAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGCTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCAAAGTCATACCCAAAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATATGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="99571" stop="98645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99271" g_stop="98941" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99271" e_stop="98941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGCTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCAAAGTCATACCCAAAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATATGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="100043" stop="98785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99743" g_stop="99085" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99743" e_stop="99085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTCCTCAACAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAAAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGAACCACCGAAACCGACTTAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGCTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCAAAGTCATACCCAAAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="100563" stop="99251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100263" g_stop="99551" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100263" e_stop="99551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGAGAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATTTAGCCAAAACTCACACTTGGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTACTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGCAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTCCTCAACAACTC-TTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="102044" stop="101267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101744" g_stop="101568" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101744" e_stop="101568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTCGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACTAAATTCTATCACACACGCACGAAGCATATCCTCCAATACTTGAATTGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335079" ref_strand="+" ref_description="SGN-U335079        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114C15-qkvaI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0114C15.1" temp_strand="-" temp_description="C04HBa0114C15.1  CT990488.10 htgs_phase:3 submitted_to_sgn_as:C04HBa0114C15 sequenced_by:sanger upload_account_name:uk">
        <position start="104273" stop="103266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103973" g_stop="103636" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114C15.1" gen_strand="-" ref_id="SGN-U335079" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114C15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103973" e_stop="103636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCGATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>28</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="10296" PGL_stop="16047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10296" e_stop="10492"/>
            <exon e_start="10568" e_stop="10776"/>
            <exon e_start="12755" e_stop="12879"/>
            <exon e_start="12980" e_stop="13031"/>
            <exon e_start="13119" e_stop="13205"/>
            <exon e_start="14697" e_stop="14819"/>
            <exon e_start="15460" e_stop="16047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.721" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.553" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.641" e_score="1.000"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10296" e_stop="10492" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.990">
            <gDNA_intron_boundary i_start="10493" i_stop="10567" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10568" e_stop="10776" e_length="209"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.721">
            <gDNA_intron_boundary i_start="10777" i_stop="12754" i_length="1978"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12755" e_stop="12879" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.553">
            <gDNA_intron_boundary i_start="12880" i_stop="12979" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12980" e_stop="13031" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.883">
            <gDNA_intron_boundary i_start="13032" i_stop="13118" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13119" e_stop="13205" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.972">
            <gDNA_intron_boundary i_start="13206" i_stop="14696" i_length="1491"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14697" e_stop="14819" e_length="123"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.641">
            <gDNA_intron_boundary i_start="14820" i_stop="15459" i_length="640"/>
          </intron>
          <exon e_serial="7" e_score="0.939">
            <gDNA_exon_boundary e_start="15460" e_stop="16047" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10296" stop="10492"/>
              <exon start="10568" stop="10776"/>
              <exon start="12755" stop="12860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10297" stop="10492"/>
              <exon start="10568" stop="10776"/>
              <exon start="12755" stop="12879"/>
              <exon start="12980" stop="13031"/>
              <exon start="13119" stop="13205"/>
              <exon start="14697" stop="14819"/>
              <exon start="15460" stop="16047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316262" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGACAAAGCAATATCAGAATTTCAAGTTCCAACAGCCATATCAACAGGTTATGTATTACTGCTCATTACTGCTAAAAGACAACATATGGCCTTGGAATGAAGAACTTGAAGTGCTTCCACATCTTAAAGTTGATGATCTGGTTAAGTTCTATCCGCTTTTGATGGCTAGGTCCTTTATGGAGTGCTATGTAGCAG : GAAATGTTGAACAAGCTGAAGCAGAGTCCATGATACAGCTTATTGAAGATGTGTTCTTCAAGGGTCCACAGTCAATATCAAAGCCTCTATTTGCATCTCAGCATCTGACAAACAGAGTGGTCAATCTTGAAAGAGGTGTAAATTATGTCTACGCTGCAGAGGGACTAAATCCAAGTGATGAAAATTCAGCTCTTGTTCATTATATTCAG : GTGCATCAGGATGACTTTATGCTGAATGTAAAACTTCAGCTTTTTGCTCTCATAGCAAAGCAGCCAGCCTTCCACCAGCTTAGATCAGTCGAGCAACTTGGTTATATCACTGTGCTCATGCAGAG : GAGCGACTCTGGTGTTCACGGGGTGCAGTTTATCGTTCAGTCAACTGCAAAG : GATCCCAAATACATTGACACAAGAGTGGAGTTATTTATGAAGATGTTTGAGAGCAAGCTTTATGAGATGACTAGTGATGAATTCAAG : AATAATGTCAATGCACTTATTGATATGAAGCTTGAGAAACACAAGAATTTACGGGAGGAATCTCGGTTTTACTGGAGGGAGATCTCAGATGGGACCCTCAAGTTTGATAGACGAGACCGTGAG : ATTGTCGCGTTAAAGCAACTGACTCAAAAGGAGCTGACAGATTTCTTCGATGAATATATTAAAGTCGGTGTTCCTCGGAAGAAGGCCTTAAGTGTCAGAGTCTATGGAAGCTCACATTCTTCTCAATTCCAAGCACATAAGAATGAGCAGATGGAACCAAATGCAGTTCAGATAGAAGAAATATTTAGCTTTCGACGATCTCGGCCTCTTTATAGTTCATTCAAAGGAGGCTTTGGTCATGTGAGATTGTAAGAGGTCGCATAGCAGCTCGAGAAGCCCCCCAATGCAGTTGATATGTTGCGTTAGCGAGTCCATTACAGAAGCAGTTGATCTGCAAGATACCTCTCTCGTATTCAGTTGTGTCAATTAGTCAGTTGTACGAGGGCTCGTGGTAGGCGTGTGAGTTTAATTGCTCAACTGATTTGATGATGTACTGCTTAGAGATTTGGAAGAAGTGAATGTATACTGTGACACCAATTTCTGTTTTGATTGCTGAATATAATTGATCAGAAGACAAGAAGTGACATGAATTAGACCTGAAAGGAAAATTATTCATTCATGGTGTTGATGGGATAAATAAACTACAAT</gDNA_template>
            <first_frame> G  D  K  A  I  S  E  F  Q  V  P  T  A  I  S  T  G  Y  V  L  L  L  I  T  A  K  R  Q  H  M  A  L  E  *  R  T  *  S  A  S  T  S  *  S  *  *  S  G  *  V  L  S  A  F  D  G  *  V  L  Y  G  V  L  C  S  R :   K  C  *  T  S  *  S  R  V  H  D  T  A  Y  *  R  C  V  L  Q  G  S  T  V  N  I  K  A  S  I  C  I  S  A  S  D  K  Q  S  G  Q  S  *  K  R  C  K  L  C  L  R  C  R  G  T  K  S  K  *  *  K  F  S  S  C  S  L  Y  S   : G  A  S  G  *  L  Y  A  E  C  K  T  S  A  F  C  S  H  S  K  A  A  S  L  P  P  A  *  I  S  R  A  T  W  L  Y  H  C  A  H  A  E  :  E  R  L  W  C  S  R  G  A  V  Y  R  S  V  N  C  K   : G  S  Q  I  H  *  H  K  S  G  V  I  Y  E  D  V  *  E  Q  A  L  *  D  D  *  *  *  I  Q   : E  *  C  Q  C  T  Y  *  Y  E  A  *  E  T  Q  E  F  T  G  G  I  S  V  L  L  E  G  D  L  R  W  D  P  Q  V  *  *  T  R  P  *   : D  C  R  V  K  A  T  D  S  K  G  A  D  R  F  L  R  *  I  Y  *  S  R  C  S  S  E  E  G  L  K  C  Q  S  L  W  K  L  T  F  F  S  I  P  S  T  *  E  *  A  D  G  T  K  C  S  S  D  R  R  N  I  *  L  S  T  I  S  A  S  L  *  F  I  Q  R  R  L  W  S  C  E  I  V  R  G  R  I  A  A  R  E  A  P  Q  C  S  *  Y  V  A  L  A  S  P  L  Q  K  Q  L  I  C  K  I  P  L  S  Y  S  V  V  S  I  S  Q  L  Y  E  G  S  W  *  A  C  E  F  N  C  S  T  D  L  M  M  Y  C  L  E  I  W  K  K  *  M  Y  T  V  T  P  I  S  V  L  I  A  E  Y  N  *  S  E  D  K  K  *  H  E  L  D  L  K  G  K  L  F  I  H  G  V  D  G  I  N  K  L  Q  </first_frame>
            <second_frame>  V  T  K  Q  Y  Q  N  F  K  F  Q  Q  P  Y  Q  Q  V  M  Y  Y  C  S  L  L  L  K  D  N  I  W  P  W  N  E  E  L  E  V  L  P  H  L  K  V  D  D  L  V  K  F  Y  P  L  L  M  A  R  S  F  M  E  C  Y  V  A   : G  N  V  E  Q  A  E  A  E  S  M  I  Q  L  I  E  D  V  F  F  K  G  P  Q  S  I  S  K  P  L  F  A  S  Q  H  L  T  N  R  V  V  N  L  E  R  G  V  N  Y  V  Y  A  A  E  G  L  N  P  S  D  E  N  S  A  L  V  H  Y  I  Q  :  V  H  Q  D  D  F  M  L  N  V  K  L  Q  L  F  A  L  I  A  K  Q  P  A  F  H  Q  L  R  S  V  E  Q  L  G  Y  I  T  V  L  M  Q  R :   S  D  S  G  V  H  G  V  Q  F  I  V  Q  S  T  A  K  :  D  P  K  Y  I  D  T  R  V  E  L  F  M  K  M  F  E  S  K  L  Y  E  M  T  S  D  E  F  K  :  N  N  V  N  A  L  I  D  M  K  L  E  K  H  K  N  L  R  E  E  S  R  F  Y  W  R  E  I  S  D  G  T  L  K  F  D  R  R  D  R  E  :  I  V  A  L  K  Q  L  T  Q  K  E  L  T  D  F  F  D  E  Y  I  K  V  G  V  P  R  K  K  A  L  S  V  R  V  Y  G  S  S  H  S  S  Q  F  Q  A  H  K  N  E  Q  M  E  P  N  A  V  Q  I  E  E  I  F  S  F  R  R  S  R  P  L  Y  S  S  F  K  G  G  F  G  H  V  R  L  *  E  V  A  *  Q  L  E  K  P  P  N  A  V  D  M  L  R  *  R  V  H  Y  R  S  S  *  S  A  R  Y  L  S  R  I  Q  L  C  Q  L  V  S  C  T  R  A  R  G  R  R  V  S  L  I  A  Q  L  I  *  *  C  T  A  *  R  F  G  R  S  E  C  I  L  *  H  Q  F  L  F  *  L  L  N  I  I  D  Q  K  T  R  S  D  M  N  *  T  *  K  E  N  Y  S  F  M  V  L  M  G  *  I  N  Y  N </second_frame>
            <third_frame>   *  Q  S  N  I  R  I  S  S  S  N  S  H  I  N  R  L  C  I  T  A  H  Y  C  *  K  T  T  Y  G  L  G  M  K  N  L  K  C  F  H  I  L  K  L  M  I  W  L  S  S  I  R  F  *  W  L  G  P  L  W  S  A  M  *  Q  :  E  M  L  N  K  L  K  Q  S  P  *  Y  S  L  L  K  M  C  S  S  R  V  H  S  Q  Y  Q  S  L  Y  L  H  L  S  I  *  Q  T  E  W  S  I  L  K  E  V  *  I  M  S  T  L  Q  R  D  *  I  Q  V  M  K  I  Q  L  L  F  I  I  F  R :   C  I  R  M  T  L  C  *  M  *  N  F  S  F  L  L  S  *  Q  S  S  Q  P  S  T  S  L  D  Q  S  S  N  L  V  I  S  L  C  S  C  R   : G  A  T  L  V  F  T  G  C  S  L  S  F  S  Q  L  Q  R :   I  P  N  T  L  T  Q  E  W  S  Y  L  *  R  C  L  R  A  S  F  M  R  *  L  V  M  N  S  R :   I  M  S  M  H  L  L  I  *  S  L  R  N  T  R  I  Y  G  R  N  L  G  F  T  G  G  R  S  Q  M  G  P  S  S  L  I  D  E  T  V  R :   L  S  R  *  S  N  *  L  K  R  S  *  Q  I  S  S  M  N  I  L  K  S  V  F  L  G  R  R  P  *  V  S  E  S  M  E  A  H  I  L  L  N  S  K  H  I  R  M  S  R  W  N  Q  M  Q  F  R  *  K  K  Y  L  A  F  D  D  L  G  L  F  I  V  H  S  K  E  A  L  V  M  *  D  C  K  R  S  H  S  S  S  R  S  P  P  M  Q  L  I  C  C  V  S  E  S  I  T  E  A  V  D  L  Q  D  T  S  L  V  F  S  C  V  N  *  S  V  V  R  G  L  V  V  G  V  *  V  *  L  L  N  *  F  D  D  V  L  L  R  D  L  E  E  V  N  V  Y  C  D  T  N  F  C  F  D  C  *  I  *  L  I  R  R  Q  E  V  T  *  I  R  P  E  R  K  I  I  H  S  W  C  *  W  D  K  *  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10297" stop="10492"/>
                    <exon start="10568" stop="10776"/>
                    <exon start="12755" stop="12879"/>
                    <exon start="12980" stop="13031"/>
                    <exon start="13119" stop="13205"/>
                    <exon start="14697" stop="14819"/>
                    <exon start="15460" stop="15711"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTKQYQNFKFQQPYQQVMYYCSLLLKDNIWPWNEELEVLPHLKVDDLVKFYPLLMARSFMECYVAGNVEQAEAESMIQLIEDVFFKGPQSISKPLFASQHLTNRVVNLERGVNYVYAAEGLNPSDENSALVHYIQVHQDDFMLNVKLQLFALIAKQPAFHQLRSVEQLGYITVLMQRSDSGVHGVQFIVQSTAKDPKYIDTRVELFMKMFESKLYEMTSDEFKNNVNALIDMKLEKHKNLREESRFYWREISDGTLKFDRRDREIVALKQLTQKELTDFFDEYIKVGVPRKKALSVRVYGSSHSSQFQAHKNEQMEPNAVQIEEIFSFRRSRPLYSSFKGGFGHVRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="17178" PGL_stop="23430"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17178" e_stop="17488"/>
            <exon e_start="17587" e_stop="17662"/>
            <exon e_start="18395" e_stop="18462"/>
            <exon e_start="23204" e_stop="23295"/>
            <exon e_start="23368" e_stop="23430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17178" e_stop="17488" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17489" i_stop="17586" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17587" e_stop="17662" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.903">
            <gDNA_intron_boundary i_start="17663" i_stop="18394" i_length="732"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18395" e_stop="18462" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="18463" i_stop="23203" i_length="4741"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23204" e_stop="23295" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="23296" i_stop="23367" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23368" e_stop="23430" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17178" stop="17488"/>
              <exon start="17587" stop="17662"/>
              <exon start="18395" stop="18462"/>
              <exon start="23204" stop="23295"/>
              <exon start="23368" stop="23430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAATATTACGGAAATTTCTCTACAAGTGCAGGTTTTATTGATGCAAGTTGAGATTTTGAACTTACCCTTTACTTTCATTTGTTGTATTTCGGTGATTCTTGAAATACCCATTTGGGATTTTGGACTTAAATCGTGTTTTTTGAGCTATTGAGATTTGGGGTTGTTAAACTTTGCGAGAAAATGGCTGTGGGCAAAGCAGATGAACCTGTAGAGATCTTTAAGGCTCGTTCTGATAAGAGGGAGTACAGAAGAATAGTTCTTCAGAACTCTCTTGAAGTTCTACTAATCACTGATCCTGAAACAGACAAG : TGTGCTGCTTCTATGGAGGTGTCAGTGGGGTATTACAGTGATCCTAAGGGTCTTGAAGGCCTTGCTCATTTTCTTG : AACATATGCTGTTTTATGCAAGTGAGAAGTATCCTGTGGAGAATAGTTACTCAAAATACATCACCCAG : CACGGAGGTTCCACCAATGCCTTTACATCTTCTGAGCGCACCAACTTTTACTTCGATATCAATGCAGATTGTTTTGAAGAAGCATTGGACAG : ATTTGCGCAGTTTTTTGTCAAACCATTGATGTCACCTGATGCCACAACAAGGGAAATAAAAGC</gDNA_template>
            <first_frame> I  N  I  T  E  I  S  L  Q  V  Q  V  L  L  M  Q  V  E  I  L  N  L  P  F  T  F  I  C  C  I  S  V  I  L  E  I  P  I  W  D  F  G  L  K  S  C  F  L  S  Y  *  D  L  G  L  L  N  F  A  R  K  W  L  W  A  K  Q  M  N  L  *  R  S  L  R  L  V  L  I  R  G  S  T  E  E  *  F  F  R  T  L  L  K  F  Y  *  S  L  I  L  K  Q  T  S :   V  L  L  L  W  R  C  Q  W  G  I  T  V  I  L  R  V  L  K  A  L  L  I  F  L  :  N  I  C  C  F  M  Q  V  R  S  I  L  W  R  I  V  T  Q  N  T  S  P  S :   T  E  V  P  P  M  P  L  H  L  L  S  A  P  T  F  T  S  I  S  M  Q  I  V  L  K  K  H  W  T   : D  L  R  S  F  L  S  N  H  *  C  H  L  M  P  Q  Q  G  K  *  K  </first_frame>
            <second_frame>  S  I  L  R  K  F  L  Y  K  C  R  F  Y  *  C  K  L  R  F  *  T  Y  P  L  L  S  F  V  V  F  R  *  F  L  K  Y  P  F  G  I  L  D  L  N  R  V  F  *  A  I  E  I  W  G  C  *  T  L  R  E  N  G  C  G  Q  S  R  *  T  C  R  D  L  *  G  S  F  *  *  E  G  V  Q  K  N  S  S  S  E  L  S  *  S  S  T  N  H  *  S  *  N  R  Q   : V  C  C  F  Y  G  G  V  S  G  V  L  Q  *  S  *  G  S  *  R  P  C  S  F  S  * :   T  Y  A  V  L  C  K  *  E  V  S  C  G  E  *  L  L  K  I  H  H  P   : A  R  R  F  H  Q  C  L  Y  I  F  *  A  H  Q  L  L  L  R  Y  Q  C  R  L  F  *  R  S  I  G  Q  :  I  C  A  V  F  C  Q  T  I  D  V  T  *  C  H  N  K  G  N  K  S </second_frame>
            <third_frame>   Q  Y  Y  G  N  F  S  T  S  A  G  F  I  D  A  S  *  D  F  E  L  T  L  Y  F  H  L  L  Y  F  G  D  S  *  N  T  H  L  G  F  W  T  *  I  V  F  F  E  L  L  R  F  G  V  V  K  L  C  E  K  M  A  V  G  K  A  D  E  P  V  E  I  F  K  A  R  S  D  K  R  E  Y  R  R  I  V  L  Q  N  S  L  E  V  L  L  I  T  D  P  E  T  D  K  :  C  A  A  S  M  E  V  S  V  G  Y  Y  S  D  P  K  G  L  E  G  L  A  H  F  L   : E  H  M  L  F  Y  A  S  E  K  Y  P  V  E  N  S  Y  S  K  Y  I  T  Q  :  H  G  G  S  T  N  A  F  T  S  S  E  R  T  N  F  Y  F  D  I  N  A  D  C  F  E  E  A  L  D  R :   F  A  Q  F  F  V  K  P  L  M  S  P  D  A  T  T  R  E  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17309" stop="17488"/>
                    <exon start="17587" stop="17662"/>
                    <exon start="18395" stop="18462"/>
                    <exon start="23204" stop="23295"/>
                    <exon start="23368" stop="23428"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVFFELLRFGVVKLCEKMAVGKADEPVEIFKARSDKREYRRIVLQNSLEVLLITDPETDKCAASMEVSVGYYSDPKGLEGLAHFLEHMLFYASEKYPVENSYSKYITQHGGSTNAFTSSERTNFYFDINADCFEEALDRFAQFFVKPLMSPDATTREIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25132" PGL_stop="36904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25132" e_stop="25205"/>
            <exon e_start="25290" e_stop="25402"/>
            <exon e_start="26181" e_stop="26343"/>
            <exon e_start="26805" e_stop="26897"/>
            <exon e_start="27078" e_stop="27163"/>
            <exon e_start="32340" e_stop="32426"/>
            <exon e_start="36801" e_stop="36904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.284" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.797" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.664" e_score="0.978"/>
          <exon-intron don_prob="0.965" acc_prob="0.757" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.904" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25132" e_stop="25205" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.284" acc_prob="0.958">
            <gDNA_intron_boundary i_start="25206" i_stop="25289" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25290" e_stop="25402" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.797" acc_prob="0.947">
            <gDNA_intron_boundary i_start="25403" i_stop="26180" i_length="778"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26181" e_stop="26343" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26344" i_stop="26804" i_length="461"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="26805" e_stop="26897" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.727" acc_prob="0.664">
            <gDNA_intron_boundary i_start="26898" i_stop="27077" i_length="180"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27078" e_stop="27163" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="0.757">
            <gDNA_intron_boundary i_start="27164" i_stop="32339" i_length="5176"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32340" e_stop="32426" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.904">
            <gDNA_intron_boundary i_start="32427" i_stop="36800" i_length="4374"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="36801" e_stop="36904" e_length="104"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25132" stop="25205"/>
              <exon start="25290" stop="25402"/>
              <exon start="26181" stop="26343"/>
              <exon start="26805" stop="26897"/>
              <exon start="27078" stop="27163"/>
              <exon start="32340" stop="32426"/>
              <exon start="36801" stop="36904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGCAGGAGCTTCTCAAATTTTATAAAGAAAATTATTCAGCCAACTTAATGCATTTGGTTGTTTATGCAAAAG : ATTGCCTTGATAAAACTCAGACACTGGTACAGGGCATATTCCAAGAAGTTCCAAATACCAATAGAAGTTACTCCCCTGTTACTGATCAGCCTTGCAAATCAGAACATCTTCAG : ATTCTAGTCAGAGCTGTTCCAATAAAACAAGGTCATAGTTTGAGGCTTGAGTGGCCAATAATTCCAGACTTAGCTCATTACAAGGAAGGGCCTTCACTCTATTTGAGTCACTTGATTGGACATGAAGGAGAAGGATCCTTGTTTTATGTCTTAAAGAAGTTAG : GTTGGGCAACAAGCTTATCGGCTGGAGAGTCAGGCGGCGGTCATCACTTCTCCTTTTTTGAAGTTTATATTAGTCTGACTGATGCTGGGCATG : ACCATTTTGAGGATGTTGTGGCACTGGTCTTCAAATATATTCACCTTCTGCAACAAGCTGGTGCCCGCAAATGGATATTTGATGAG : CTTTCTGCTATATCTGAAACGAATTTCCATTATCAAGACAAGAGTTCTCCCATCGGTTATGTGGTATATGTTGCGTCGAACATGCAG : CTTTACCCGCCAATAGATTGGTTGGTTGGGTCATCTTTACCTTCAAAGTTCAGTCCAGACATTATTGAAGCAGTTCTAACTGATCTCACACCACAAAATGTCAG</gDNA_template>
            <first_frame> K  A  G  A  S  Q  I  L  *  R  K  L  F  S  Q  L  N  A  F  G  C  L  C  K  R :   L  P  *  *  N  S  D  T  G  T  G  H  I  P  R  S  S  K  Y  Q  *  K  L  L  P  C  Y  *  S  A  L  Q  I  R  T  S  S   : D  S  S  Q  S  C  S  N  K  T  R  S  *  F  E  A  *  V  A  N  N  S  R  L  S  S  L  Q  G  R  A  F  T  L  F  E  S  L  D  W  T  *  R  R  R  I  L  V  L  C  L  K  E  V  R :   L  G  N  K  L  I  G  W  R  V  R  R  R  S  S  L  L  L  F  *  S  L  Y  *  S  D  *  C  W  A  * :   P  F  *  G  C  C  G  T  G  L  Q  I  Y  S  P  S  A  T  S  W  C  P  Q  M  D  I  *  *   : A  F  C  Y  I  *  N  E  F  P  L  S  R  Q  E  F  S  H  R  L  C  G  I  C  C  V  E  H  A   : A  L  P  A  N  R  L  V  G  W  V  I  F  T  F  K  V  Q  S  R  H  Y  *  S  S  S  N  *  S  H  T  T  K  C  Q </first_frame>
            <second_frame>  R  Q  E  L  L  K  F  Y  K  E  N  Y  S  A  N  L  M  H  L  V  V  Y  A  K   : D  C  L  D  K  T  Q  T  L  V  Q  G  I  F  Q  E  V  P  N  T  N  R  S  Y  S  P  V  T  D  Q  P  C  K  S  E  H  L  Q  :  I  L  V  R  A  V  P  I  K  Q  G  H  S  L  R  L  E  W  P  I  I  P  D  L  A  H  Y  K  E  G  P  S  L  Y  L  S  H  L  I  G  H  E  G  E  G  S  L  F  Y  V  L  K  K  L   : G  W  A  T  S  L  S  A  G  E  S  G  G  G  H  H  F  S  F  F  E  V  Y  I  S  L  T  D  A  G  H   : D  H  F  E  D  V  V  A  L  V  F  K  Y  I  H  L  L  Q  Q  A  G  A  R  K  W  I  F  D  E  :  L  S  A  I  S  E  T  N  F  H  Y  Q  D  K  S  S  P  I  G  Y  V  V  Y  V  A  S  N  M  Q  :  L  Y  P  P  I  D  W  L  V  G  S  S  L  P  S  K  F  S  P  D  I  I  E  A  V  L  T  D  L  T  P  Q  N  V   </second_frame>
            <third_frame>   G  R  S  F  S  N  F  I  K  K  I  I  Q  P  T  *  C  I  W  L  F  M  Q  K  :  I  A  L  I  K  L  R  H  W  Y  R  A  Y  S  K  K  F  Q  I  P  I  E  V  T  P  L  L  L  I  S  L  A  N  Q  N  I  F  R :   F  *  S  E  L  F  Q  *  N  K  V  I  V  *  G  L  S  G  Q  *  F  Q  T  *  L  I  T  R  K  G  L  H  S  I  *  V  T  *  L  D  M  K  E  K  D  P  C  F  M  S  *  R  S  *  :  V  G  Q  Q  A  Y  R  L  E  S  Q  A  A  V  I  T  S  P  F  L  K  F  I  L  V  *  L  M  L  G  M  :  T  I  L  R  M  L  W  H  W  S  S  N  I  F  T  F  C  N  K  L  V  P  A  N  G  Y  L  M  S :   F  L  L  Y  L  K  R  I  S  I  I  K  T  R  V  L  P  S  V  M  W  Y  M  L  R  R  T  C  S :   F  T  R  Q  *  I  G  W  L  G  H  L  Y  L  Q  S  S  V  Q  T  L  L  K  Q  F  *  L  I  S  H  H  K  M  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25133" stop="25205"/>
                    <exon start="25290" stop="25402"/>
                    <exon start="26181" stop="26343"/>
                    <exon start="26805" stop="26897"/>
                    <exon start="27078" stop="27163"/>
                    <exon start="32340" stop="32426"/>
                    <exon start="36801" stop="36902"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQELLKFYKENYSANLMHLVVYAKDCLDKTQTLVQGIFQEVPNTNRSYSPVTDQPCKSEHLQILVRAVPIKQGHSLRLEWPIIPDLAHYKEGPSLYLSHLIGHEGEGSLFYVLKKLGWATSLSAGESGGGHHFSFFEVYISLTDAGHDHFEDVVALVFKYIHLLQQAGARKWIFDELSAISETNFHYQDKSSPIGYVVYVASNMQLYPPIDWLVGSSLPSKFSPDIIEAVLTDLTPQNV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="40218" PGL_stop="44069"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40218" e_stop="40394"/>
            <exon e_start="40478" e_stop="40686"/>
            <exon e_start="41430" e_stop="41554"/>
            <exon e_start="41671" e_stop="41722"/>
            <exon e_start="41820" e_stop="41906"/>
            <exon e_start="43221" e_stop="43343"/>
            <exon e_start="44002" e_stop="44069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.709" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40218" e_stop="40394" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.709">
            <gDNA_intron_boundary i_start="40395" i_stop="40477" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40478" e_stop="40686" e_length="209"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.892">
            <gDNA_intron_boundary i_start="40687" i_stop="41429" i_length="743"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41430" e_stop="41554" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41555" i_stop="41670" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41671" e_stop="41722" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41723" i_stop="41819" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41820" e_stop="41906" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.925">
            <gDNA_intron_boundary i_start="41907" i_stop="43220" i_length="1314"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43221" e_stop="43343" e_length="123"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="43344" i_stop="44001" i_length="658"/>
          </intron>
          <exon e_serial="7" e_score="0.941">
            <gDNA_exon_boundary e_start="44002" e_stop="44069" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40218" stop="40394"/>
              <exon start="40478" stop="40686"/>
              <exon start="41430" stop="41554"/>
              <exon start="41671" stop="41722"/>
              <exon start="41820" stop="41906"/>
              <exon start="43221" stop="43343"/>
              <exon start="44002" stop="44069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATCAAGTTTCAACAGCCATACGAGCAAGCTTTGTACTACTGTTCATTAATACTTAGGGAACACTCATGGTCATGGGATGATGAATGTGAAGCTCTTACTAATCTTGAAATTGATGACCTTGTTAAATTTTATCCTCTGCTTCTATCAAGGACATTTCTGGAGTGTTATTTAGCAG : GAAACATCGACTCAAAGGAAGCAGTTTCAATGATCCAGCACGTTGAAGATGCCTTGTACAAGGGTTCCCAGCCTCTATCTCGGGCCCTTTTTGCGTCTGAGCATTCGTCAAGTAGAATTATAAATCTTGAAGAGAGCAAGAATTATTTCTATGCTGCAGAGGGCCTAAATACATCTGATGAAAATTCTGCTCTTGTCCACTACATTCAG : GTGCATTCAGATGAATACATCAAGAATGTAAAACTGCAGCTATTTGCTCTGATAGCCAAACAACCAGCTTTCGACCAGCTTAGATCTGTTGAGCAGCTTGGTTACATCACATCACTTTCACGGAC : GAGTGATGCTGGTGTTCGTGGACTGCAGCTTATAGTTCAATCATCGGTCAAG : GATCCTAGATATATCGAGTCGCGATTCCAGGCATTTCTTAAGACGTTGGAAACTCAGCTTCATGACATGTCAGATGATGAGTTTAAG : AAAAAAGTCAATGCTCTTATTGATATTAAGCTTGAGAAGTTTAAAAACTTACCGGAGGAAACCAATTTTTTCTGGTGGGAAATTTCTAGTGGCACCCTCAAATTTGATAGAATTGAAAATGAG : GTTGCAGCACTGAAGCAGATAACTAAAACGGACCTGATCGATTTCTTTAATGAATATGTGAACGTTGG</gDNA_template>
            <first_frame> T  S  S  F  N  S  H  T  S  K  L  C  T  T  V  H  *  Y  L  G  N  T  H  G  H  G  M  M  N  V  K  L  L  L  I  L  K  L  M  T  L  L  N  F  I  L  C  F  Y  Q  G  H  F  W  S  V  I  *  Q  :  E  T  S  T  Q  R  K  Q  F  Q  *  S  S  T  L  K  M  P  C  T  R  V  P  S  L  Y  L  G  P  F  L  R  L  S  I  R  Q  V  E  L  *  I  L  K  R  A  R  I  I  S  M  L  Q  R  A  *  I  H  L  M  K  I  L  L  L  S  T  T  F  R :   C  I  Q  M  N  T  S  R  M  *  N  C  S  Y  L  L  *  *  P  N  N  Q  L  S  T  S  L  D  L  L  S  S  L  V  T  S  H  H  F  H  G   : R  V  M  L  V  F  V  D  C  S  L  *  F  N  H  R  S  R :   I  L  D  I  S  S  R  D  S  R  H  F  L  R  R  W  K  L  S  F  M  T  C  Q  M  M  S  L  R :   K  K  S  M  L  L  L  I  L  S  L  R  S  L  K  T  Y  R  R  K  P  I  F  S  G  G  K  F  L  V  A  P  S  N  L  I  E  L  K  M  R :   L  Q  H  *  S  R  *  L  K  R  T  *  S  I  S  L  M  N  M  *  T  L  </first_frame>
            <second_frame>  H  Q  V  S  T  A  I  R  A  S  F  V  L  L  F  I  N  T  *  G  T  L  M  V  M  G  *  *  M  *  S  S  Y  *  S  *  N  *  *  P  C  *  I  L  S  S  A  S  I  K  D  I  S  G  V  L  F  S  R :   K  H  R  L  K  G  S  S  F  N  D  P  A  R  *  R  C  L  V  Q  G  F  P  A  S  I  S  G  P  F  C  V  *  A  F  V  K  *  N  Y  K  S  *  R  E  Q  E  L  F  L  C  C  R  G  P  K  Y  I  *  *  K  F  C  S  C  P  L  H  S   : G  A  F  R  *  I  H  Q  E  C  K  T  A  A  I  C  S  D  S  Q  T  T  S  F  R  P  A  *  I  C  *  A  A  W  L  H  H  I  T  F  T  D  :  E  *  C  W  C  S  W  T  A  A  Y  S  S  I  I  G  Q   : G  S  *  I  Y  R  V  A  I  P  G  I  S  *  D  V  G  N  S  A  S  *  H  V  R  *  *  V  *   : E  K  S  Q  C  S  Y  *  Y  *  A  *  E  V  *  K  L  T  G  G  N  Q  F  F  L  V  G  N  F  *  W  H  P  Q  I  *  *  N  *  K  *   : G  C  S  T  E  A  D  N  *  N  G  P  D  R  F  L  *  *  I  C  E  R  W </second_frame>
            <third_frame>   I  K  F  Q  Q  P  Y  E  Q  A  L  Y  Y  C  S  L  I  L  R  E  H  S  W  S  W  D  D  E  C  E  A  L  T  N  L  E  I  D  D  L  V  K  F  Y  P  L  L  L  S  R  T  F  L  E  C  Y  L  A   : G  N  I  D  S  K  E  A  V  S  M  I  Q  H  V  E  D  A  L  Y  K  G  S  Q  P  L  S  R  A  L  F  A  S  E  H  S  S  S  R  I  I  N  L  E  E  S  K  N  Y  F  Y  A  A  E  G  L  N  T  S  D  E  N  S  A  L  V  H  Y  I  Q  :  V  H  S  D  E  Y  I  K  N  V  K  L  Q  L  F  A  L  I  A  K  Q  P  A  F  D  Q  L  R  S  V  E  Q  L  G  Y  I  T  S  L  S  R  T :   S  D  A  G  V  R  G  L  Q  L  I  V  Q  S  S  V  K  :  D  P  R  Y  I  E  S  R  F  Q  A  F  L  K  T  L  E  T  Q  L  H  D  M  S  D  D  E  F  K  :  K  K  V  N  A  L  I  D  I  K  L  E  K  F  K  N  L  P  E  E  T  N  F  F  W  W  E  I  S  S  G  T  L  K  F  D  R  I  E  N  E  :  V  A  A  L  K  Q  I  T  K  T  D  L  I  D  F  F  N  E  Y  V  N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40220" stop="40394"/>
                    <exon start="40478" stop="40686"/>
                    <exon start="41430" stop="41554"/>
                    <exon start="41671" stop="41722"/>
                    <exon start="41820" stop="41906"/>
                    <exon start="43221" stop="43343"/>
                    <exon start="44002" stop="44067"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKFQQPYEQALYYCSLILREHSWSWDDECEALTNLEIDDLVKFYPLLLSRTFLECYLAGNIDSKEAVSMIQHVEDALYKGSQPLSRALFASEHSSSRIINLEESKNYFYAAEGLNTSDENSALVHYIQVHSDEYIKNVKLQLFALIAKQPAFDQLRSVEQLGYITSLSRTSDAGVRGLQLIVQSSVKDPRYIESRFQAFLKTLETQLHDMSDDEFKKKVNALIDIKLEKFKNLPEETNFFWWEISSGTLKFDRIENEVAALKQITKTDLIDFFNEYVNV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="46327" PGL_stop="45666"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46327" e_stop="45666"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="46327" e_stop="45666" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46327" stop="45666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329447" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCAAGTTTTCTTATACATCAAAGCATTGTGAATAAAGACATAATCCATGGGTAAATACACGGAGATAGTGGATGTAGGTGTGAGAATAGTAGCTAGGTTTCATTCTCATTGCCCTCAGACTGCTCGAATGTATTACCATCCACCCTCCAACATTCATGGCAATGCTTCAGATTTTCCTCGTCGTTGTAAAAAAGAGAAACTTGGGTTTATTGCTCATAATCAAGAATCGAACTCTATGGAGAGTTATGGTGTCGAGGCTTCCATGCATGTTGACACTGCAGATTTTATCGTTCACACATTGGACTAAGTCTATGTATGTACGGAACTATGAATACTCATTTTTGTGAAGATTGAAAGTGAGAATATAATGGACTGCGGTGTCAAGTTTGTGTTTATACGTGATATCAGCGTATATAAGTTAAATTCTTATTTTATTGTGTGATTATTGTATATATTGTTTATGATATGCTGGGTTGATTGGTTTGAAGGAATAGAAAAGAAAGAAAAAGAGAGATTAAATGAGTGATTTAAGTAAAAGTTATGTGAAGTCTGGGATGTGATTGTTTGTTGATCAAGTTTGTGTATATGGGGGTTTGTATGAATTGAAAGTATTTTAATACTTTATTTGATTGAAGATGTTTTAGTTCCAAGAAAAAAATT</gDNA_template>
            <first_frame> V  Q  V  F  L  Y  I  K  A  L  *  I  K  T  *  S  M  G  K  Y  T  E  I  V  D  V  G  V  R  I  V  A  R  F  H  S  H  C  P  Q  T  A  R  M  Y  Y  H  P  P  S  N  I  H  G  N  A  S  D  F  P  R  R  C  K  K  E  K  L  G  F  I  A  H  N  Q  E  S  N  S  M  E  S  Y  G  V  E  A  S  M  H  V  D  T  A  D  F  I  V  H  T  L  D  *  V  Y  V  C  T  E  L  *  I  L  I  F  V  K  I  E  S  E  N  I  M  D  C  G  V  K  F  V  F  I  R  D  I  S  V  Y  K  L  N  S  Y  F  I  V  *  L  L  Y  I  L  F  M  I  C  W  V  D  W  F  E  G  I  E  K  K  E  K  E  R  L  N  E  *  F  K  *  K  L  C  E  V  W  D  V  I  V  C  *  S  S  L  C  I  W  G  F  V  *  I  E  S  I  L  I  L  Y  L  I  E  D  V  L  V  P  R  K  K   </first_frame>
            <second_frame>  F  K  F  S  Y  T  S  K  H  C  E  *  R  H  N  P  W  V  N  T  R  R  *  W  M  *  V  *  E  *  *  L  G  F  I  L  I  A  L  R  L  L  E  C  I  T  I  H  P  P  T  F  M  A  M  L  Q  I  F  L  V  V  V  K  K  R  N  L  G  L  L  L  I  I  K  N  R  T  L  W  R  V  M  V  S  R  L  P  C  M  L  T  L  Q  I  L  S  F  T  H  W  T  K  S  M  Y  V  R  N  Y  E  Y  S  F  L  *  R  L  K  V  R  I  *  W  T  A  V  S  S  L  C  L  Y  V  I  S  A  Y  I  S  *  I  L  I  L  L  C  D  Y  C  I  Y  C  L  *  Y  A  G  L  I  G  L  K  E  *  K  R  K  K  K  R  D  *  M  S  D  L  S  K  S  Y  V  K  S  G  M  *  L  F  V  D  Q  V  C  V  Y  G  G  L  Y  E  L  K  V  F  *  Y  F  I  *  L  K  M  F  *  F  Q  E  K  N  </second_frame>
            <third_frame>   S  S  F  L  I  H  Q  S  I  V  N  K  D  I  I  H  G  *  I  H  G  D  S  G  C  R  C  E  N  S  S  *  V  S  F  S  L  P  S  D  C  S  N  V  L  P  S  T  L  Q  H  S  W  Q  C  F  R  F  S  S  S  L  *  K  R  E  T  W  V  Y  C  S  *  S  R  I  E  L  Y  G  E  L  W  C  R  G  F  H  A  C  *  H  C  R  F  Y  R  S  H  I  G  L  S  L  C  M  Y  G  T  M  N  T  H  F  C  E  D  *  K  *  E  Y  N  G  L  R  C  Q  V  C  V  Y  T  *  Y  Q  R  I  *  V  K  F  L  F  Y  C  V  I  I  V  Y  I  V  Y  D  M  L  G  *  L  V  *  R  N  R  K  E  R  K  R  E  I  K  *  V  I  *  V  K  V  M  *  S  L  G  C  D  C  L  L  I  K  F  V  Y  M  G  V  C  M  N  *  K  Y  F  N  T  L  F  D  *  R  C  F  S  S  K  K  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46282" stop="46019"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMGKYTEIVDVGVRIVARFHSHCPQTARMYYHPPSNIHGNASDFPRRCKKEKLGFIAHNQESNSMESYGVEASMHVDTADFIVHTLD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46233" stop="45979"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGFILIALRLLECITIHPPTFMAMLQIFLVVVKKRNLGLLLIIKNRTLWRVMVSRLPCMLTLQILSFTHWTKSMYVRNYEYSFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="51873" PGL_stop="48507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51873" e_stop="51845"/>
            <exon e_start="51744" e_stop="51659"/>
            <exon e_start="49493" e_stop="49349"/>
            <exon e_start="48695" e_stop="48507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.873" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.927" e_score="0.988"/>
          <exon-intron don_prob="0.999" acc_prob="0.592" e_score="0.986"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51873" e_stop="51845" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.873" acc_prob="0.996">
            <gDNA_intron_boundary i_start="51844" i_stop="51745" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="51744" e_stop="51659" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.927">
            <gDNA_intron_boundary i_start="51658" i_stop="49494" i_length="2165"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="49493" e_stop="49349" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.592">
            <gDNA_intron_boundary i_start="49348" i_stop="48696" i_length="653"/>
          </intron>
          <exon e_serial="4" e_score="0.974">
            <gDNA_exon_boundary e_start="48695" e_stop="48507" e_length="189"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51873" stop="51845"/>
              <exon start="51744" stop="51659"/>
              <exon start="49493" stop="49349"/>
              <exon start="48695" stop="48507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345789" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACTCTATCTTCTTCATTCCTCAAACAA : GTTTACTTGTATGATTGGTGGTTGATTAAAGTTGAAACTGGTGATGGAAGCAAGCGATTGGGTGTTGGAGGTTTCACTGCAAAAGA : GAGACCAGATGGAAGAGTTTTCCACTCCACAACAATTGCGAAGAGGCATGATACTACCACTTTAGTGACGGAGGATGGTATCACCATTCTTCTTAGCGGTTTCATTAACAGGTGCCGAACTCTTCAAAATGGCTTCTCATCAGAG : GTTTGCAAGCAGTTCCTTCTTGGATTTCCATACAACTGGGAAGAGTCTGCTGCTGTGTCATTTGGAGAATCAACCAATGAAAATGCAGCCTCTAGAATTTCTGATTTCTCAGAGTCAGCAAATGCATCAGCTGATTGCACAAGTAGTTCCTTTACACTGTCCGTTGATCATCTTTCCCCCAATGTTTTA</gDNA_template>
            <first_frame> S  L  Y  L  L  H  S  S  N  K :   F  T  C  M  I  G  G  *  L  K  L  K  L  V  M  E  A  S  D  W  V  L  E  V  S  L  Q  K   : R  D  Q  M  E  E  F  S  T  P  Q  Q  L  R  R  G  M  I  L  P  L  *  *  R  R  M  V  S  P  F  F  L  A  V  S  L  T  G  A  E  L  F  K  M  A  S  H  Q  R :   F  A  S  S  S  F  L  D  F  H  T  T  G  K  S  L  L  L  C  H  L  E  N  Q  P  M  K  M  Q  P  L  E  F  L  I  S  Q  S  Q  Q  M  H  Q  L  I  A  Q  V  V  P  L  H  C  P  L  I  I  F  P  P  M  F   </first_frame>
            <second_frame>  H  S  I  F  F  I  P  Q  T   : S  L  L  V  *  L  V  V  D  *  S  *  N  W  *  W  K  Q  A  I  G  C  W  R  F  H  C  K  R  :  E  T  R  W  K  S  F  P  L  H  N  N  C  E  E  A  *  Y  Y  H  F  S  D  G  G  W  Y  H  H  S  S  *  R  F  H  *  Q  V  P  N  S  S  K  W  L  L  I  R   : G  L  Q  A  V  P  S  W  I  S  I  Q  L  G  R  V  C  C  C  V  I  W  R  I  N  Q  *  K  C  S  L  *  N  F  *  F  L  R  V  S  K  C  I  S  *  L  H  K  *  F  L  Y  T  V  R  *  S  S  F  P  Q  C  F  </second_frame>
            <third_frame>   T  L  S  S  S  F  L  K  Q  :  V  Y  L  Y  D  W  W  L  I  K  V  E  T  G  D  G  S  K  R  L  G  V  G  G  F  T  A  K  E :   R  P  D  G  R  V  F  H  S  T  T  I  A  K  R  H  D  T  T  T  L  V  T  E  D  G  I  T  I  L  L  S  G  F  I  N  R  C  R  T  L  Q  N  G  F  S  S  E  :  V  C  K  Q  F  L  L  G  F  P  Y  N  W  E  E  S  A  A  V  S  F  G  E  S  T  N  E  N  A  A  S  R  I  S  D  F  S  E  S  A  N  A  S  A  D  C  T  S  S  S  F  T  L  S  V  D  H  L  S  P  N  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51871" stop="51845"/>
                    <exon start="51744" stop="51659"/>
                    <exon start="49493" stop="49349"/>
                    <exon start="48695" stop="48507"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSSSFLKQVYLYDWWLIKVETGDGSKRLGVGGFTAKERPDGRVFHSTTIAKRHDTTTLVTEDGITILLSGFINRCRTLQNGFSSEVCKQFLLGFPYNWEESAAVSFGESTNENAASRISDFSESANASADCTSSSFTLSVDHLSPNVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="67329" PGL_stop="67835"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67329" e_stop="67835"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67329" e_stop="67835" e_length="507"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67329" stop="67835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341455" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATCTTTAACACTTGAGTTCAAGAACTCAAAAAGAACATAAAGCTCTCATTTTTACTCTTGTGTGTGTGTAAAATTGAGGTTGTGGGGTTTCAATGTTAGTCCAAGATCGTGAAGATGGTATTTCTAAATCACCAAAAGGACCAAAACCCATTAGAGAAAGATCATCAATCCCTCTATCAAGAACCCCAAATCGTTTAAATGGAGCCAAGAATCTTGATTTTTCTACATGGGTTTCTGAAAATCTTTACAAAATCCTCACCATTTTGCTCTTAATCTCTACCATTGCTATTTTCTTCTACCTTCGTAGTGCTGCTGGTGATACCACTACTCTCCTTTGCTTACAGTCAACTCAAACTCACTCCATCAGACCTGAGTTCCCTAAAATCAACTGGAATAACATTCCAGCTATCTTAGATAAGTCTACTCCTTATGCAAATTTTCGATCTGAGAAATGGGTTGTGGTTTCTGTTTCAGATTACCCGTCGGATTCGCTTAGAAAGCTTG</gDNA_template>
            <first_frame> R  I  F  N  T  *  V  Q  E  L  K  K  N  I  K  L  S  F  L  L  L  C  V  C  K  I  E  V  V  G  F  Q  C  *  S  K  I  V  K  M  V  F  L  N  H  Q  K  D  Q  N  P  L  E  K  D  H  Q  S  L  Y  Q  E  P  Q  I  V  *  M  E  P  R  I  L  I  F  L  H  G  F  L  K  I  F  T  K  S  S  P  F  C  S  *  S  L  P  L  L  F  S  S  T  F  V  V  L  L  V  I  P  L  L  S  F  A  Y  S  Q  L  K  L  T  P  S  D  L  S  S  L  K  S  T  G  I  T  F  Q  L  S  *  I  S  L  L  L  M  Q  I  F  D  L  R  N  G  L  W  F  L  F  Q  I  T  R  R  I  R  L  E  S  L </first_frame>
            <second_frame>  E  S  L  T  L  E  F  K  N  S  K  R  T  *  S  S  H  F  Y  S  C  V  C  V  K  L  R  L  W  G  F  N  V  S  P  R  S  *  R  W  Y  F  *  I  T  K  R  T  K  T  H  *  R  K  I  I  N  P  S  I  K  N  P  K  S  F  K  W  S  Q  E  S  *  F  F  Y  M  G  F  *  K  S  L  Q  N  P  H  H  F  A  L  N  L  Y  H  C  Y  F  L  L  P  S  *  C  C  W  *  Y  H  Y  S  P  L  L  T  V  N  S  N  S  L  H  Q  T  *  V  P  *  N  Q  L  E  *  H  S  S  Y  L  R  *  V  Y  S  L  C  K  F  S  I  *  E  M  G  C  G  F  C  F  R  L  P  V  G  F  A  *  K  A   </second_frame>
            <third_frame>   N  L  *  H  L  S  S  R  T  Q  K  E  H  K  A  L  I  F  T  L  V  C  V  *  N  *  G  C  G  V  S  M  L  V  Q  D  R  E  D  G  I  S  K  S  P  K  G  P  K  P  I  R  E  R  S  S  I  P  L  S  R  T  P  N  R  L  N  G  A  K  N  L  D  F  S  T  W  V  S  E  N  L  Y  K  I  L  T  I  L  L  L  I  S  T  I  A  I  F  F  Y  L  R  S  A  A  G  D  T  T  T  L  L  C  L  Q  S  T  Q  T  H  S  I  R  P  E  F  P  K  I  N  W  N  N  I  P  A  I  L  D  K  S  T  P  Y  A  N  F  R  S  E  K  W  V  V  V  S  V  S  D  Y  P  S  D  S  L  R  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67409" stop="67834"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCGVSMLVQDREDGISKSPKGPKPIRERSSIPLSRTPNRLNGAKNLDFSTWVSENLYKILTILLLISTIAIFFYLRSAAGDTTTLLCLQSTQTHSIRPEFPKINWNNIPAILDKSTPYANFRSEKWVVVSVSDYPSDSLRKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="68655" PGL_stop="72538"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68655" e_stop="69144"/>
            <exon e_start="70869" e_stop="70995"/>
            <exon e_start="71803" e_stop="71894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.852" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68655" e_stop="69144" e_length="490"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69145" i_stop="70868" i_length="1724"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70869" e_stop="70995" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.852">
            <gDNA_intron_boundary i_start="70996" i_stop="71802" i_length="807"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71803" e_stop="71894" e_length="92"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68655" stop="69144"/>
              <exon start="70869" stop="70995"/>
              <exon start="71803" stop="71894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTAACAAAGTTTTTGGTAGCGTGGAGATCCAGTAAACACAGGTTGTTTGAAAAGATTTTGGAGTTAAGCTATGCAATGGCTGAAGAAGGCTTTTGGACAGTGCAAGATGTCAAGTTCACTGCTGCATGGCTTCAAGATCTGCTTGCTGTTGGGTACATGCAGCCTCGGCTAATGGCTTTAGAGTTGGATCGGCCAAGGGCAAGCATAGGACATGGTGACAGGAAGGAATTTGTACCTCAGAAGTTGCCATCTGTGCATCTTGGGGTAGAAGAGATTGGTACAGTGAATTATGAAATCGCCAATTTGATTAAGTGGAGGAAGAATTTTGGCAATGTTGTGCTCATAATCTTTTGTAGTGGACCTGTTGAACGTACTGCCTTGGAGTGGAGATTACTATATGGCAGGATATTTAAGACAGTTATCATATTGTCTGACCAGAAGAATGTAGATCTTGCCGTTGAAAAAGGAAATTTGGATTATATGTACAG : GTATGCACCAAAGATACTTGATAGGTACACTAGTGCAGAAGGCTTTCTATTTCTCCAGGACGATACTATCCTTAATTACTGGAACTTACTTCAAGCAGATAAGTCAAAGCTCTGGATAGGAAACAAG : GTATCCAAGTCATGGCACGCTGTTCCAGTAGCTAACAAATCGGACTGGTTTGTGAAGCAAGCTGACGTTGTTAAGAAAGTGGTAGCAACAAT</gDNA_template>
            <first_frame> V  *  Q  S  F  W  *  R  G  D  P  V  N  T  G  C  L  K  R  F  W  S  *  A  M  Q  W  L  K  K  A  F  G  Q  C  K  M  S  S  S  L  L  H  G  F  K  I  C  L  L  L  G  T  C  S  L  G  *  W  L  *  S  W  I  G  Q  G  Q  A  *  D  M  V  T  G  R  N  L  Y  L  R  S  C  H  L  C  I  L  G  *  K  R  L  V  Q  *  I  M  K  S  P  I  *  L  S  G  G  R  I  L  A  M  L  C  S  *  S  F  V  V  D  L  L  N  V  L  P  W  S  G  D  Y  Y  M  A  G  Y  L  R  Q  L  S  Y  C  L  T  R  R  M  *  I  L  P  L  K  K  E  I  W  I  I  C  T   : G  M  H  Q  R  Y  L  I  G  T  L  V  Q  K  A  F  Y  F  S  R  T  I  L  S  L  I  T  G  T  Y  F  K  Q  I  S  Q  S  S  G  *  E  T  R :   Y  P  S  H  G  T  L  F  Q  *  L  T  N  R  T  G  L  *  S  K  L  T  L  L  R  K  W  *  Q  Q  </first_frame>
            <second_frame>  F  N  K  V  F  G  S  V  E  I  Q  *  T  Q  V  V  *  K  D  F  G  V  K  L  C  N  G  *  R  R  L  L  D  S  A  R  C  Q  V  H  C  C  M  A  S  R  S  A  C  C  W  V  H  A  A  S  A  N  G  F  R  V  G  S  A  K  G  K  H  R  T  W  *  Q  E  G  I  C  T  S  E  V  A  I  C  A  S  W  G  R  R  D  W  Y  S  E  L  *  N  R  Q  F  D  *  V  E  E  E  F  W  Q  C  C  A  H  N  L  L  *  W  T  C  *  T  Y  C  L  G  V  E  I  T  I  W  Q  D  I  *  D  S  Y  H  I  V  *  P  E  E  C  R  S  C  R  *  K  R  K  F  G  L  Y  V  Q  :  V  C  T  K  D  T  *  *  V  H  *  C  R  R  L  S  I  S  P  G  R  Y  Y  P  *  L  L  E  L  T  S  S  R  *  V  K  A  L  D  R  K  Q   : G  I  Q  V  M  A  R  C  S  S  S  *  Q  I  G  L  V  C  E  A  S  *  R  C  *  E  S  G  S  N  N </second_frame>
            <third_frame>   L  T  K  F  L  V  A  W  R  S  S  K  H  R  L  F  E  K  I  L  E  L  S  Y  A  M  A  E  E  G  F  W  T  V  Q  D  V  K  F  T  A  A  W  L  Q  D  L  L  A  V  G  Y  M  Q  P  R  L  M  A  L  E  L  D  R  P  R  A  S  I  G  H  G  D  R  K  E  F  V  P  Q  K  L  P  S  V  H  L  G  V  E  E  I  G  T  V  N  Y  E  I  A  N  L  I  K  W  R  K  N  F  G  N  V  V  L  I  I  F  C  S  G  P  V  E  R  T  A  L  E  W  R  L  L  Y  G  R  I  F  K  T  V  I  I  L  S  D  Q  K  N  V  D  L  A  V  E  K  G  N  L  D  Y  M  Y  R :   Y  A  P  K  I  L  D  R  Y  T  S  A  E  G  F  L  F  L  Q  D  D  T  I  L  N  Y  W  N  L  L  Q  A  D  K  S  K  L  W  I  G  N  K  :  V  S  K  S  W  H  A  V  P  V  A  N  K  S  D  W  F  V  K  Q  A  D  V  V  K  K  V  V  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68657" stop="69144"/>
                    <exon start="70869" stop="70995"/>
                    <exon start="71803" stop="71892"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTKFLVAWRSSKHRLFEKILELSYAMAEEGFWTVQDVKFTAAWLQDLLAVGYMQPRLMALELDRPRASIGHGDRKEFVPQKLPSVHLGVEEIGTVNYEIANLIKWRKNFGNVVLIIFCSGPVERTALEWRLLYGRIFKTVIILSDQKNVDLAVEKGNLDYMYRYAPKILDRYTSAEGFLFLQDDTILNYWNLLQADKSKLWIGNKVSKSWHAVPVANKSDWFVKQADVVKKVVAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71347" e_stop="72538"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="71347" e_stop="72538" e_length="1192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71347" stop="72538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAAGAAACTCCGACTACTAACTACTACTAGTCTACTACTACTAGTAGCAGGGGAGTAGATGAGGCTATCCCCCTGCCTCTCCCACATGAAGTGCGGTAACACTCGGCTACCTACTAACCGTCTACTCTAATCATTGACATCCAGTACATATGTAGAATAATATATGTAAGGTTCTTTATTTCTTTATTCGGCTTGGAGAGGAGATAATGTATATGAAACCCGAGACCATCGTCATGAGGAAAGAGTTCCATCCTATGATATGTTTAGACATAGCTTGAGTTTTTTACTTGTGGTTAAAGCGCACTTGCTTGATCATCCAACTGCCTCCAGGGAGAGAGGGAAAAGGGATTTTTTTTGTAAGTTCTTAATTTATTGTTGCAAATGATCAACTCTCAAACCTGTCCTACCCAAATACACAAGCAATAGGCGTCTCATTTCTTTCTTTTGCGTATAGGTATCCAAGTCATGGCACGCTGTTCCAGTAGCTAACAAATCGGACTGGTTTGTGAAGCAAGCTGACGTTGTTAAGAAAGTGGTAGCAACAATGCCGGTACATTTGCAAGTCAATTACAAAGAGACAATGAGAAGTGACGAGACCTTGACGATATGCAGTTCGGAGATATTCTACATACCCCGTCGTTTTGTATCCGACTTTGTCGACCTCATTAATCTAGTAGGGAATCTAGACGTGCATCACAAGGTTGCAATGCCAATGTTTTTTACGGCTATGGATTCTCCACAGAATTTCGATTCAGTATTGAATTCGATGATTTACAAGAAGAAGTCTCCTGGCAATTTAACGACATTCTATTCAGCTGAGGCACCTGCAATTCACCCATGGAAAGTGTCAAGTGAGCAAGAGTTCATAAAACTGATCAGAGTTATGGCTGCAGGTGACCCCCTGTTAATGGAGTTGGTATAGTGTAATGATAGATACTTGAAGAGTCTCACAGTGAAAATGTAAAACATGTAAAGTTTATGTGCAGCTGAATTCTACTATTCTTTTGTACCTTTCATTAGTAGGGGGGGAATGGGGTGAAAGAAGAGGTTTTGTGCTCTTGTAGATTTTTGTTGTAATACTGTTTTAACTCTTAAAAATTTTGTGGCAAAGAGAATTGAAGGAGAAAACAGTGCAGGCTTTCTTCTGATTTTCATTTTGCTTTTGAATACGTTTTGTTTCTACAGAGAAA</gDNA_template>
            <first_frame> N  K  K  L  R  L  L  T  T  T  S  L  L  L  L  V  A  G  E  *  M  R  L  S  P  C  L  S  H  M  K  C  G  N  T  R  L  P  T  N  R  L  L  *  S  L  T  S  S  T  Y  V  E  *  Y  M  *  G  S  L  F  L  Y  S  A  W  R  G  D  N  V  Y  E  T  R  D  H  R  H  E  E  R  V  P  S  Y  D  M  F  R  H  S  L  S  F  L  L  V  V  K  A  H  L  L  D  H  P  T  A  S  R  E  R  G  K  R  D  F  F  C  K  F  L  I  Y  C  C  K  *  S  T  L  K  P  V  L  P  K  Y  T  S  N  R  R  L  I  S  F  F  C  V  *  V  S  K  S  W  H  A  V  P  V  A  N  K  S  D  W  F  V  K  Q  A  D  V  V  K  K  V  V  A  T  M  P  V  H  L  Q  V  N  Y  K  E  T  M  R  S  D  E  T  L  T  I  C  S  S  E  I  F  Y  I  P  R  R  F  V  S  D  F  V  D  L  I  N  L  V  G  N  L  D  V  H  H  K  V  A  M  P  M  F  F  T  A  M  D  S  P  Q  N  F  D  S  V  L  N  S  M  I  Y  K  K  K  S  P  G  N  L  T  T  F  Y  S  A  E  A  P  A  I  H  P  W  K  V  S  S  E  Q  E  F  I  K  L  I  R  V  M  A  A  G  D  P  L  L  M  E  L  V  *  C  N  D  R  Y  L  K  S  L  T  V  K  M  *  N  M  *  S  L  C  A  A  E  F  Y  Y  S  F  V  P  F  I  S  R  G  G  M  G  *  K  K  R  F  C  A  L  V  D  F  C  C  N  T  V  L  T  L  K  N  F  V  A  K  R  I  E  G  E  N  S  A  G  F  L  L  I  F  I  L  L  L  N  T  F  C  F  Y  R  E  </first_frame>
            <second_frame>  I  R  N  S  D  Y  *  L  L  L  V  Y  Y  Y  *  *  Q  G  S  R  *  G  Y  P  P  A  S  P  T  *  S  A  V  T  L  G  Y  L  L  T  V  Y  S  N  H  *  H  P  V  H  M  *  N  N  I  C  K  V  L  Y  F  F  I  R  L  G  E  E  I  M  Y  M  K  P  E  T  I  V  M  R  K  E  F  H  P  M  I  C  L  D  I  A  *  V  F  Y  L  W  L  K  R  T  C  L  I  I  Q  L  P  P  G  R  E  G  K  G  I  F  F  V  S  S  *  F  I  V  A  N  D  Q  L  S  N  L  S  Y  P  N  T  Q  A  I  G  V  S  F  L  S  F  A  Y  R  Y  P  S  H  G  T  L  F  Q  *  L  T  N  R  T  G  L  *  S  K  L  T  L  L  R  K  W  *  Q  Q  C  R  Y  I  C  K  S  I  T  K  R  Q  *  E  V  T  R  P  *  R  Y  A  V  R  R  Y  S  T  Y  P  V  V  L  Y  P  T  L  S  T  S  L  I  *  *  G  I  *  T  C  I  T  R  L  Q  C  Q  C  F  L  R  L  W  I  L  H  R  I  S  I  Q  Y  *  I  R  *  F  T  R  R  S  L  L  A  I  *  R  H  S  I  Q  L  R  H  L  Q  F  T  H  G  K  C  Q  V  S  K  S  S  *  N  *  S  E  L  W  L  Q  V  T  P  C  *  W  S  W  Y  S  V  M  I  D  T  *  R  V  S  Q  *  K  C  K  T  C  K  V  Y  V  Q  L  N  S  T  I  L  L  Y  L  S  L  V  G  G  E  W  G  E  R  R  G  F  V  L  L  *  I  F  V  V  I  L  F  *  L  L  K  I  L  W  Q  R  E  L  K  E  K  T  V  Q  A  F  F  *  F  S  F  C  F  *  I  R  F  V  S  T  E  K </second_frame>
            <third_frame>   *  E  T  P  T  T  N  Y  Y  *  S  T  T  T  S  S  R  G  V  D  E  A  I  P  L  P  L  P  H  E  V  R  *  H  S  A  T  Y  *  P  S  T  L  I  I  D  I  Q  Y  I  C  R  I  I  Y  V  R  F  F  I  S  L  F  G  L  E  R  R  *  C  I  *  N  P  R  P  S  S  *  G  K  S  S  I  L  *  Y  V  *  T  *  L  E  F  F  T  C  G  *  S  A  L  A  *  S  S  N  C  L  Q  G  E  R  E  K  G  F  F  L  *  V  L  N  L  L  L  Q  M  I  N  S  Q  T  C  P  T  Q  I  H  K  Q  *  A  S  H  F  F  L  L  R  I  G  I  Q  V  M  A  R  C  S  S  S  *  Q  I  G  L  V  C  E  A  S  *  R  C  *  E  S  G  S  N  N  A  G  T  F  A  S  Q  L  Q  R  D  N  E  K  *  R  D  L  D  D  M  Q  F  G  D  I  L  H  T  P  S  F  C  I  R  L  C  R  P  H  *  S  S  R  E  S  R  R  A  S  Q  G  C  N  A  N  V  F  Y  G  Y  G  F  S  T  E  F  R  F  S  I  E  F  D  D  L  Q  E  E  V  S  W  Q  F  N  D  I  L  F  S  *  G  T  C  N  S  P  M  E  S  V  K  *  A  R  V  H  K  T  D  Q  S  Y  G  C  R  *  P  P  V  N  G  V  G  I  V  *  *  *  I  L  E  E  S  H  S  E  N  V  K  H  V  K  F  M  C  S  *  I  L  L  F  F  C  T  F  H  *  *  G  G  N  G  V  K  E  E  V  L  C  S  C  R  F  L  L  *  Y  C  F  N  S  *  K  F  C  G  K  E  N  *  R  R  K  Q  C  R  L  S  S  D  F  H  F  A  F  E  Y  V  L  F  L  Q  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71803" stop="72270"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSKSWHAVPVANKSDWFVKQADVVKKVVATMPVHLQVNYKETMRSDETLTICSSEIFYIPRRFVSDFVDLINLVGNLDVHHKVAMPMFFTAMDSPQNFDSVLNSMIYKKKSPGNLTTFYSAEAPAIHPWKVSSEQEFIKLIRVMAAGDPLLMELV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71518" stop="71733"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLFLYSAWRGDNVYETRDHRHEERVPSYDMFRHSLSFLLVVKAHLLDHPTASRERGKRDFFCKFLIYCCK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="75522" PGL_stop="72496"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75522" e_stop="74208"/>
            <exon e_start="74109" e_stop="73633"/>
            <exon e_start="73531" e_stop="72972"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75522" e_stop="74208" e_length="1315"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74109" e_stop="73633" e_length="477"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73531" e_stop="72972" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75522" stop="74208"/>
              <exon start="74109" stop="73633"/>
              <exon start="73531" stop="72972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73910" stop="73633"/>
              <exon start="73531" stop="72972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334635" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATGCAGTTCTCCACTTTGGTACTCATGGTTCTCTTGAGTTCATGCCAGGAAAACAGGTGGGAATGAGCGATGCATGTTTCCCAGATAGTCTCATTGGAAACATTCCAAATGTCTATTACTATGCAGCAAACAATCCATCCGAAGCAACTATTGCCAAACGAAGGAGTTATGCAAATACCATTAGCTACTTGACTCCCCCTGCTGAGAATGCCGGACTCTACAAGGGACTCAAGCAGCTTAGTGAGCTCATTGCTTCGTACCAATCACTGAAAGACTCAGGTCGTGGCCCTCAGATTGTGAGCTCTATCATTAGTACTGCTAGACAGTGTAATCTTGACAAGGACGTTGATCTTCCAGATGAAGAGAAGGAAATAGATGCCAAAGAACGTGACCTTGTGGTAGGAAAAGTATATGCTAAGATTATGGAGATTGAGTCTCGTCTTCTGCCCTGTGGACTTCACATCATTGGTGAACCTCCAACCGCCATGGAGGCAGTTGCCACTCTTGTCAACATTGCTGCATTGGACCGTGCTGAAGATGATATTTCTTCCCTTCCATCTATTCTGGCTGCCACAGTTGGCAGAAATATTGAGGAGATCTATCGAGGAAATGACAATGGAGTCTTGCGAGATGTGGAGCTGCTTCGTCAAATTACTGAGGCATCACGTGGAGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAACACCCAATTCTACAGAGCTGATAGGGAAAAGCTCAGAGTCCTGTTTCAGTTCTTGGGAGAGTGTCTGAAGCTAATTGTGGCTAATAACGAGGTGGGAAGTTTGAAACAGGCTCTTGAAGGGAAATATGTTGAACCAGGTCCTGGAGGGGATCCAATCAGAAATCCGAAAGTTTTGCCTACAGGGAAAAACATCCATGCTTTGGACCCACAGGCTATTCCCACAACAGCAGCACTGCAGAGCGCCAAGATAGTGGTTGAAAGATTGTTGGAGAGGCAAAAGATTGACAACGGGGGCAAGTACCCGGAAACTGTTGCTCTGGTGCTTTGGGGAACAGATAACATCAAGACTTATGGAGAGTCGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG : ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAAAAACACTCGGAATTGATGTTCGTGAAGCAGCTACTAGGGTCTTCTCAAACGCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATCATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGAGCCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG : GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTCAA</gDNA_template>
            <first_frame> *  C  S  S  P  L  W  Y  S  W  F  S  *  V  H  A  R  K  T  G  G  N  E  R  C  M  F  P  R  *  S  H  W  K  H  S  K  C  L  L  L  C  S  K  Q  S  I  R  S  N  Y  C  Q  T  K  E  L  C  K  Y  H  *  L  L  D  S  P  C  *  E  C  R  T  L  Q  G  T  Q  A  A  *  *  A  H  C  F  V  P  I  T  E  R  L  R  S  W  P  S  D  C  E  L  Y  H  *  Y  C  *  T  V  *  S  *  Q  G  R  *  S  S  R  *  R  E  G  N  R  C  Q  R  T  *  P  C  G  R  K  S  I  C  *  D  Y  G  D  *  V  S  S  S  A  L  W  T  S  H  H  W  *  T  S  N  R  H  G  G  S  C  H  S  C  Q  H  C  C  I  G  P  C  *  R  *  Y  F  F  P  S  I  Y  S  G  C  H  S  W  Q  K  Y  *  G  D  L  S  R  K  *  Q  W  S  L  A  R  C  G  A  A  S  S  N  Y  *  G  I  T  W  S  N  I  S  L  R  *  T  L  N  Q  Q  Q  G  S  G  C  *  Q  F  *  Q  A  D  L  T  P  W  F  F  Y  *  *  T  M  D  P  V  F  I  K  H  P  I  L  Q  S  *  *  G  K  A  Q  S  P  V  S  V  L  G  R  V  S  E  A  N  C  G  *  *  R  G  G  K  F  E  T  G  S  *  R  E  I  C  *  T  R  S  W  R  G  S  N  Q  K  S  E  S  F  A  Y  R  E  K  H  P  C  F  G  P  T  G  Y  S  H  N  S  S  T  A  E  R  Q  D  S  G  *  K  I  V  G  E  A  K  D  *  Q  R  G  Q  V  P  G  N  C  C  S  G  A  L  G  N  R  *  H  Q  D  L  W  R  V  V  G  T  G  Y  V  D  D  W  C  *  A  S  C  R  H  T  W  T  R  *  P  S  G  T  S  *  S  *  R  A  W  K  A  *  S  *  C  C  C  Q  L  L  R  G  V  Q  G  S  L  H  Q  S   : D  E  S  P  *  P  R  N  Q  D  G  C  *  A  *  *  T  G  R  P  K  L  C  Q  E  T  C  T  R  T  G  K  N  T  R  N  *  C  S  *  S  S  Y  *  G  L  L  K  R  F  G  F  L  L  F  Q  H  Q  P  S  C  *  E  L  I  M  E  R  R  E  A  T  S  R  H  V  L  E  P  K  V  I  C  I  *  L  *  C  S  W  C  W  H  D  G  E  E  E  S  F  *  D  G  S  K  H  S  *  C  H  V  P  E  P  R  L  I  R  N  F  T  H  R  R  *  S  L  L  R  F  R  S  N  Q  P  R  S  E  P  Q  E  G  W  Q  E  T  *  C  I  H  C  *  H  H  Y  C  *  C  S   : G  T  Y  V  V  *  D  C  E  A  R  C  K  D  K  V  V  E  P  Q  V  V  *  R  H  A  V  H  W  L  R  G  C  S  *  D  *  E  T  I  D  Q  H  S  G  V  E  C  N  F  R  P  S  *  Q  L  G  V  *  R  S  Q  H  N  I  H  Q  R  *  R  D  V  E  Q  A  Y  E  H  K  S  K  F  F  Q  E  V  A  S  D  I  L  G  G  Q  R  A  W  I  L  G  Y  F  *  R  E  H  *  E  T  Q  A  I  V  L  R  S  R  R  Q  D  *  R  N  R  P  I  N  V  *  L  N  I  *  S  L  I  I  V  C  F  C  Y  R  I  I  R  S  F  L  L  P  N  N  F  *  C  E  F  L  *  *  S  P  V  *  F  L  F  I  F  W  G  C  L  S  T  S  M  R  K  I  L  L  P  Y  V  Q </first_frame>
            <second_frame>  D  A  V  L  H  F  G  T  H  G  S  L  E  F  M  P  G  K  Q  V  G  M  S  D  A  C  F  P  D  S  L  I  G  N  I  P  N  V  Y  Y  Y  A  A  N  N  P  S  E  A  T  I  A  K  R  R  S  Y  A  N  T  I  S  Y  L  T  P  P  A  E  N  A  G  L  Y  K  G  L  K  Q  L  S  E  L  I  A  S  Y  Q  S  L  K  D  S  G  R  G  P  Q  I  V  S  S  I  I  S  T  A  R  Q  C  N  L  D  K  D  V  D  L  P  D  E  E  K  E  I  D  A  K  E  R  D  L  V  V  G  K  V  Y  A  K  I  M  E  I  E  S  R  L  L  P  C  G  L  H  I  I  G  E  P  P  T  A  M  E  A  V  A  T  L  V  N  I  A  A  L  D  R  A  E  D  D  I  S  S  L  P  S  I  L  A  A  T  V  G  R  N  I  E  E  I  Y  R  G  N  D  N  G  V  L  R  D  V  E  L  L  R  Q  I  T  E  A  S  R  G  A  I  S  A  F  V  E  R  S  T  N  N  K  G  Q  V  V  D  N  S  D  K  L  T  S  L  L  G  F  S  I  N  E  P  W  I  Q  Y  L  S  N  T  Q  F  Y  R  A  D  R  E  K  L  R  V  L  F  Q  F  L  G  E  C  L  K  L  I  V  A  N  N  E  V  G  S  L  K  Q  A  L  E  G  K  Y  V  E  P  G  P  G  G  D  P  I  R  N  P  K  V  L  P  T  G  K  N  I  H  A  L  D  P  Q  A  I  P  T  T  A  A  L  Q  S  A  K  I  V  V  E  R  L  L  E  R  Q  K  I  D  N  G  G  K  Y  P  E  T  V  A  L  V  L  W  G  T  D  N  I  K  T  Y  G  E  S  L  A  Q  V  M  W  M  I  G  V  R  P  V  A  D  T  L  G  R  V  N  R  V  E  P  V  S  L  E  E  L  G  R  P  R  V  D  V  V  V  N  C  S  G  V  F  R  D  L  F  I  N  Q  :  M  N  L  L  D  R  G  I  K  M  V  A  E  L  D  E  P  E  D  Q  N  F  V  R  K  H  A  L  E  Q  A  K  T  L  G  I  D  V  R  E  A  A  T  R  V  F  S  N  A  S  G  S  Y  S  S  N  I  N  L  A  V  E  N  S  S  W  N  D  E  K  Q  L  Q  D  M  Y  L  S  R  K  S  F  A  F  D  C  D  A  P  G  A  G  M  M  E  K  R  K  V  F  E  M  A  L  S  T  A  D  A  T  F  Q  N  L  D  S  S  E  I  S  L  T  D  V  S  H  Y  F  D  S  D  P  T  N  L  V  Q  N  L  R  K  D  G  K  K  P  S  A  Y  I  A  D  T  T  T  A  N  A  Q  :  V  R  T  L  S  E  T  V  R  L  D  A  R  T  K  L  L  N  P  K  W  Y  E  G  M  L  S  T  G  Y  E  G  V  R  E  I  E  K  R  L  T  N  T  V  G  W  S  A  T  S  G  Q  V  D  N  W  V  Y  E  E  A  N  T  T  F  I  K  D  E  E  M  L  N  R  L  M  N  T  N  P  N  S  F  R  K  L  L  Q  T  F  L  E  A  N  G  R  G  Y  W  D  T  S  E  E  N  I  E  K  L  K  Q  L  Y  S  E  V  E  D  K  I  E  G  I  D  R  *  M  Y  S  *  I  Y  D  L  *  L  L  F  V  S  A  T  G  *  *  D  P  F  C  F  L  T  I  S  D  V  N  S  F  D  S  P  Q  C  N  F  C  S  S  F  G  D  V  F  L  L  L  *  E  K  Y  C  F  H  M  F   </second_frame>
            <third_frame>   M  Q  F  S  T  L  V  L  M  V  L  L  S  S  C  Q  E  N  R  W  E  *  A  M  H  V  S  Q  I  V  S  L  E  T  F  Q  M  S  I  T  M  Q  Q  T  I  H  P  K  Q  L  L  P  N  E  G  V  M  Q  I  P  L  A  T  *  L  P  L  L  R  M  P  D  S  T  R  D  S  S  S  L  V  S  S  L  L  R  T  N  H  *  K  T  Q  V  V  A  L  R  L  *  A  L  S  L  V  L  L  D  S  V  I  L  T  R  T  L  I  F  Q  M  K  R  R  K  *  M  P  K  N  V  T  L  W  *  E  K  Y  M  L  R  L  W  R  L  S  L  V  F  C  P  V  D  F  T  S  L  V  N  L  Q  P  P  W  R  Q  L  P  L  L  S  T  L  L  H  W  T  V  L  K  M  I  F  L  P  F  H  L  F  W  L  P  Q  L  A  E  I  L  R  R  S  I  E  E  M  T  M  E  S  C  E  M  W  S  C  F  V  K  L  L  R  H  H  V  E  Q  Y  Q  P  S  L  N  A  Q  P  T  T  R  V  R  L  L  T  I  L  T  S  *  P  H  S  L  V  F  L  L  M  N  H  G  S  S  I  Y  Q  T  P  N  S  T  E  L  I  G  K  S  S  E  S  C  F  S  S  W  E  S  V  *  S  *  L  W  L  I  T  R  W  E  V  *  N  R  L  L  K  G  N  M  L  N  Q  V  L  E  G  I  Q  S  E  I  R  K  F  C  L  Q  G  K  T  S  M  L  W  T  H  R  L  F  P  Q  Q  Q  H  C  R  A  P  R  *  W  L  K  D  C  W  R  G  K  R  L  T  T  G  A  S  T  R  K  L  L  L  W  C  F  G  E  Q  I  T  S  R  L  M  E  S  R  W  H  R  L  C  G  *  L  V  L  G  Q  L  Q  T  H  L  D  A  L  T  E  W  N  Q  L  V  L  K  S  L  E  G  L  E  L  M  L  L  S  T  A  P  G  C  S  G  I  S  S  S  I  R :   *  I  S  L  T  E  E  S  R  W  L  L  S  L  M  N  R  K  T  K  T  L  S  G  N  M  H  *  N  R  Q  K  H  S  E  L  M  F  V  K  Q  L  L  G  S  S  Q  T  L  R  V  L  T  L  P  T  S  T  *  L  L  R  T  H  H  G  T  T  R  S  N  F  K  T  C  T  *  A  E  S  H  L  H  L  T  V  M  L  L  V  L  A  *  W  R  R  G  K  F  L  R  W  L  *  A  Q  L  M  P  R  S  R  T  S  T  H  Q  K  F  H  S  Q  T  L  V  T  T  S  I  Q  I  Q  P  T  S  F  R  T  S  G  R  M  A  R  N  L  V  H  T  L  L  T  P  L  L  L  M  L  R :   Y  V  R  C  L  R  L  *  G  *  M  Q  G  Q  S  C  *  T  P  S  G  M  K  A  C  C  P  L  A  T  R  V  F  V  R  L  R  N  D  *  P  T  Q  W  G  G  V  Q  L  Q  A  K  L  T  I  G  C  M  K  K  P  T  Q  H  S  S  K  M  K  R  C  *  T  G  L  *  T  Q  I  Q  I  L  S  G  S  C  F  R  H  S  W  R  P  T  G  V  D  T  G  I  L  L  K  R  T  L  R  N  S  S  N  C  T  Q  K  S  K  T  R  L  K  E  *  T  D  K  C  I  A  K  Y  M  I  S  D  Y  C  L  F  L  L  Q  D  N  K  I  L  S  A  S  *  Q  F  L  M  *  I  P  L  I  V  P  S  V  I  F  V  H  L  L  G  M  S  F  Y  F  Y  E  K  N  T  A  S  I  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75521" stop="74208"/>
                    <exon start="74109" stop="73633"/>
                    <exon start="73531" stop="73154"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2166</number_coding_nucleotides>
                  <number_encoded_amino_acids>722</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAVLHFGTHGSLEFMPGKQVGMSDACFPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELIASYQSLKDSGRGPQIVSSIISTARQCNLDKDVDLPDEEKEIDAKERDLVVGKVYAKIMEIESRLLPCGLHIIGEPPTAMEAVATLVNIAALDRAEDDISSLPSILAATVGRNIEEIYRGNDNGVLRDVELLRQITEASRGAISAFVERSTNNKGQVVDNSDKLTSLLGFSINEPWIQYLSNTQFYRADREKLRVLFQFLGECLKLIVANNEVGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAALQSAKIVVERLLERQKIDNGGKYPETVALVLWGTDNIKTYGESLAQVMWMIGVRPVADTLGRVNRVEPVSLEELGRPRVDVVVNCSGVFRDLFINQMNLLDRGIKMVAELDEPEDQNFVRKHALEQAKTLGIDVREAATRVFSNASGSYSSNINLAVENSSWNDEKQLQDMYLSRKSFAFDCDAPGAGMMEKRKVFEMALSTADATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSTGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIKDEEMLNRLMNTNPNSFRKLLQTFLEANGRGYWDTSEENIEKLKQLYSEVEDKIEGIDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74368" e_stop="74208"/>
            <exon e_start="74109" e_stop="74062"/>
            <exon e_start="73876" e_stop="73633"/>
            <exon e_start="73531" e_stop="72974"/>
            <exon e_start="72527" e_stop="72496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.872" e_score="0.997"/>
          <exon-only e_score="0.562"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="74368" e_stop="74208" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74207" i_stop="74110" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74109" e_stop="74062" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74061" i_stop="73877" i_length="185"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73876" e_stop="73633" e_length="244"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="73531" e_stop="72974" e_length="558"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.872">
            <gDNA_intron_boundary i_start="72973" i_stop="72528" i_length="446"/>
          </intron>
          <exon e_serial="5" e_score="0.562">
            <gDNA_exon_boundary e_start="72527" e_stop="72496" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74368" stop="74208"/>
              <exon start="74109" stop="74062"/>
              <exon start="73876" stop="73633"/>
              <exon start="73531" stop="73135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73300" stop="72974"/>
              <exon start="72527" stop="72496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334633" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTTGGCACAGGTTATGTGGATGATTGGTGTTAGGCCAGTTGCAGACACACTTGGACGCGTTAACCGAGTGGAACCAGTTAGTCTTGAAGAGCTTGGAAGGCCTAGAGTTGATGTTGTTGTCAACTGCTCCGGGGTGTTCAGGGATCTCTTCATCAATCAG : ATGAATCTCCTTGACCGAGGAATCAAGATGGTTGCTGAGCTTGATGAA : CCGAAAGTCATTTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAAGTTTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGACTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATCCAACCAACCTCGTTCAGAACCTCAGGAAGGATGGCAAGAAACCTAGTGCATACATTGCTGACACCACTACTGCTAATGCTCAG : GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTC : AAACAAAACGTATTCAAAAGCAAAATGAAAAT</gDNA_template>
            <first_frame> R  W  H  R  L  C  G  *  L  V  L  G  Q  L  Q  T  H  L  D  A  L  T  E  W  N  Q  L  V  L  K  S  L  E  G  L  E  L  M  L  L  S  T  A  P  G  C  S  G  I  S  S  S  I  R :   *  I  S  L  T  E  E  S  R  W  L  L  S  L  M  N :   R  K  S  F  A  F  D  C  D  A  P  G  A  G  M  M  E  K  R  K  V  F  E  M  A  L  S  T  A  D  A  T  F  Q  N  L  D  S  S  E  I  S  L  T  D  V  S  H  Y  F  D  S  D  P  T  N  L  V  Q  N  L  R  K  D  G  K  K  P  S  A  Y  I  A  D  T  T  T  A  N  A  Q  :  V  R  T  L  S  E  T  V  R  L  D  A  R  T  K  L  L  N  P  K  W  Y  E  G  M  L  S  T  G  Y  E  G  V  R  E  I  E  K  R  L  T  N  T  V  G  W  S  A  T  S  G  Q  V  D  N  W  V  Y  E  E  A  N  T  T  F  I  K  D  E  E  M  L  N  R  L  M  N  T  N  P  N  S  F  R  K  L  L  Q  T  F  L  E  A  N  G  R  G  Y  W  D  T  S  E  E  N  I  E  K  L  K  Q  L  Y  S  E  V  E  D  K  I  E  G  I  D  R  *  M  Y  S  *  I  Y  D  L  *  L  L  F  V  S  A  T  G  *  *  D  P  F  C  F  L  T  I  S  D  V  N  S  F  D  S  P  Q  C  N  F  C  S  S  F  G  D  V  F  L  L  L  *  E  K  Y  C  F  H  M  F  :  K  Q  N  V  F  K  S  K  M  K   </first_frame>
            <second_frame>  V  G  T  G  Y  V  D  D  W  C  *  A  S  C  R  H  T  W  T  R  *  P  S  G  T  S  *  S  *  R  A  W  K  A  *  S  *  C  C  C  Q  L  L  R  G  V  Q  G  S  L  H  Q  S   : D  E  S  P  *  P  R  N  Q  D  G  C  *  A  *  *   : T  E  S  H  L  H  L  T  V  M  L  L  V  L  A  *  W  R  R  G  K  F  L  R  W  L  *  A  Q  L  M  P  R  S  R  T  S  T  H  Q  K  F  H  S  Q  T  L  V  T  T  S  I  Q  I  Q  P  T  S  F  R  T  S  G  R  M  A  R  N  L  V  H  T  L  L  T  P  L  L  L  M  L  R :   Y  V  R  C  L  R  L  *  G  *  M  Q  G  Q  S  C  *  T  P  S  G  M  K  A  C  C  P  L  A  T  R  V  F  V  R  L  R  N  D  *  P  T  Q  W  G  G  V  Q  L  Q  A  K  L  T  I  G  C  M  K  K  P  T  Q  H  S  S  K  M  K  R  C  *  T  G  L  *  T  Q  I  Q  I  L  S  G  S  C  F  R  H  S  W  R  P  T  G  V  D  T  G  I  L  L  K  R  T  L  R  N  S  S  N  C  T  Q  K  S  K  T  R  L  K  E  *  T  D  K  C  I  A  K  Y  M  I  S  D  Y  C  L  F  L  L  Q  D  N  K  I  L  S  A  S  *  Q  F  L  M  *  I  P  L  I  V  P  S  V  I  F  V  H  L  L  G  M  S  F  Y  F  Y  E  K  N  T  A  S  I  C  S :   N  K  T  Y  S  K  A  K  *  K  </second_frame>
            <third_frame>   L  A  Q  V  M  W  M  I  G  V  R  P  V  A  D  T  L  G  R  V  N  R  V  E  P  V  S  L  E  E  L  G  R  P  R  V  D  V  V  V  N  C  S  G  V  F  R  D  L  F  I  N  Q  :  M  N  L  L  D  R  G  I  K  M  V  A  E  L  D  E  :  P  K  V  I  C  I  *  L  *  C  S  W  C  W  H  D  G  E  E  E  S  F  *  D  G  S  K  H  S  *  C  H  V  P  E  P  R  L  I  R  N  F  T  H  R  R  *  S  L  L  R  F  R  S  N  Q  P  R  S  E  P  Q  E  G  W  Q  E  T  *  C  I  H  C  *  H  H  Y  C  *  C  S   : G  T  Y  V  V  *  D  C  E  A  R  C  K  D  K  V  V  E  P  Q  V  V  *  R  H  A  V  H  W  L  R  G  C  S  *  D  *  E  T  I  D  Q  H  S  G  V  E  C  N  F  R  P  S  *  Q  L  G  V  *  R  S  Q  H  N  I  H  Q  R  *  R  D  V  E  Q  A  Y  E  H  K  S  K  F  F  Q  E  V  A  S  D  I  L  G  G  Q  R  A  W  I  L  G  Y  F  *  R  E  H  *  E  T  Q  A  I  V  L  R  S  R  R  Q  D  *  R  N  R  P  I  N  V  *  L  N  I  *  S  L  I  I  V  C  F  C  Y  R  I  I  R  S  F  L  L  P  N  N  F  *  C  E  F  L  *  *  S  P  V  *  F  L  F  I  F  W  G  C  L  S  T  S  M  R  K  I  L  L  P  Y  V   : Q  T  K  R  I  Q  K  Q  N  E  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74105" stop="74062"/>
                    <exon start="73876" stop="73633"/>
                    <exon start="73531" stop="73154"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISLTEESRWLLSLMNRKSFAFDCDAPGAGMMEKRKVFEMALSTADATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSTGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIKDEEMLNRLMNTNPNSFRKLLQTFLEANGRGYWDTSEENIEKLKQLYSEVEDKIEGIDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="74850" e_stop="74727"/>
            <exon e_start="73653" e_stop="73633"/>
            <exon e_start="73531" e_stop="72974"/>
            <exon e_start="72527" e_stop="72496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.872" e_score="0.995"/>
          <exon-only e_score="0.562"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74850" e_stop="74727" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74726" i_stop="73654" i_length="1073"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73653" e_stop="73633" e_length="21"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73632" i_stop="73532" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="73531" e_stop="72974" e_length="558"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.872">
            <gDNA_intron_boundary i_start="72973" i_stop="72528" i_length="446"/>
          </intron>
          <exon e_serial="4" e_score="0.562">
            <gDNA_exon_boundary e_start="72527" e_stop="72496" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74850" stop="74727"/>
              <exon start="73653" stop="73633"/>
              <exon start="73531" stop="73128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73300" stop="72974"/>
              <exon start="72527" stop="72496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334633" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAATATCAGCCTTCGTTGAACGCTCAACCAACAACAAGGGTCAGGTTGTTGACAATTCTGACAAGCTGACCTCACTCCTTGGTTTTTCTATTAATGAACCATGGATCCAGTATTTATCAAAC : ACCACTACTGCTAATGCTCAG : GTACGTACGTTGTCTGAGACTGTGAGGCTAGATGCAAGGACAAAGTTGTTGAACCCCAAGTGGTATGAAGGCATGCTGTCCACTGGCTACGAGGGTGTTCGTGAGATTGAGAAACGATTGACCAACACAGTGGGGTGGAGTGCAACTTCAGGCCAAGTTGACAATTGGGTGTATGAAGAAGCCAACACAACATTCATCAAAGATGAAGAGATGTTGAACAGGCTTATGAACACAAATCCAAATTCTTTCAGGAAGTTGCTTCAGACATTCTTGGAGGCCAACGGGCGTGGATACTGGGATACTTCTGAAGAGAACATTGAGAAACTCAAGCAATTGTACTCAGAAGTCGAAGACAAGATTGAAGGAATAGACCGATAAATGTATAGCTAAATATATGATCTCTGATTATTGTTTGTTTCTGCTACAGGATAATAAGATCCTTTCTGCTTCCTAACAATTTCTGATGTGAATTCCTTTGATAGTCCCCAGTGTAATTTTTGTTCATCTTTTGGGGATGTCTTTCTACTTCTATGAGAAAAATACTGCTTCCATATGTTC : AAACAAAACGTATTCAAAAGCAAAATGAAAAT</gDNA_template>
            <first_frame> S  N  I  S  L  R  *  T  L  N  Q  Q  Q  G  S  G  C  *  Q  F  *  Q  A  D  L  T  P  W  F  F  Y  *  *  T  M  D  P  V  F  I  K   : H  H  Y  C  *  C  S   : G  T  Y  V  V  *  D  C  E  A  R  C  K  D  K  V  V  E  P  Q  V  V  *  R  H  A  V  H  W  L  R  G  C  S  *  D  *  E  T  I  D  Q  H  S  G  V  E  C  N  F  R  P  S  *  Q  L  G  V  *  R  S  Q  H  N  I  H  Q  R  *  R  D  V  E  Q  A  Y  E  H  K  S  K  F  F  Q  E  V  A  S  D  I  L  G  G  Q  R  A  W  I  L  G  Y  F  *  R  E  H  *  E  T  Q  A  I  V  L  R  S  R  R  Q  D  *  R  N  R  P  I  N  V  *  L  N  I  *  S  L  I  I  V  C  F  C  Y  R  I  I  R  S  F  L  L  P  N  N  F  *  C  E  F  L  *  *  S  P  V  *  F  L  F  I  F  W  G  C  L  S  T  S  M  R  K  I  L  L  P  Y  V   : Q  T  K  R  I  Q  K  Q  N  E  N </first_frame>
            <second_frame>  A  I  S  A  F  V  E  R  S  T  N  N  K  G  Q  V  V  D  N  S  D  K  L  T  S  L  L  G  F  S  I  N  E  P  W  I  Q  Y  L  S  N  :  T  T  T  A  N  A  Q  :  V  R  T  L  S  E  T  V  R  L  D  A  R  T  K  L  L  N  P  K  W  Y  E  G  M  L  S  T  G  Y  E  G  V  R  E  I  E  K  R  L  T  N  T  V  G  W  S  A  T  S  G  Q  V  D  N  W  V  Y  E  E  A  N  T  T  F  I  K  D  E  E  M  L  N  R  L  M  N  T  N  P  N  S  F  R  K  L  L  Q  T  F  L  E  A  N  G  R  G  Y  W  D  T  S  E  E  N  I  E  K  L  K  Q  L  Y  S  E  V  E  D  K  I  E  G  I  D  R  *  M  Y  S  *  I  Y  D  L  *  L  L  F  V  S  A  T  G  *  *  D  P  F  C  F  L  T  I  S  D  V  N  S  F  D  S  P  Q  C  N  F  C  S  S  F  G  D  V  F  L  L  L  *  E  K  Y  C  F  H  M  F  :  K  Q  N  V  F  K  S  K  M  K   </second_frame>
            <third_frame>   Q  Y  Q  P  S  L  N  A  Q  P  T  T  R  V  R  L  L  T  I  L  T  S  *  P  H  S  L  V  F  L  L  M  N  H  G  S  S  I  Y  Q  T :   P  L  L  L  M  L  R :   Y  V  R  C  L  R  L  *  G  *  M  Q  G  Q  S  C  *  T  P  S  G  M  K  A  C  C  P  L  A  T  R  V  F  V  R  L  R  N  D  *  P  T  Q  W  G  G  V  Q  L  Q  A  K  L  T  I  G  C  M  K  K  P  T  Q  H  S  S  K  M  K  R  C  *  T  G  L  *  T  Q  I  Q  I  L  S  G  S  C  F  R  H  S  W  R  P  T  G  V  D  T  G  I  L  L  K  R  T  L  R  N  S  S  N  C  T  Q  K  S  K  T  R  L  K  E  *  T  D  K  C  I  A  K  Y  M  I  S  D  Y  C  L  F  L  L  Q  D  N  K  I  L  S  A  S  *  Q  F  L  M  *  I  P  L  I  V  P  S  V  I  F  V  H  L  L  G  M  S  F  Y  F  Y  E  K  N  T  A  S  I  C  S :   N  K  T  Y  S  K  A  K  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74849" stop="74727"/>
                    <exon start="73653" stop="73633"/>
                    <exon start="73531" stop="73154"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AISAFVERSTNNKGQVVDNSDKLTSLLGFSINEPWIQYLSNTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSTGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIKDEEMLNRLMNTNPNSFRKLLQTFLEANGRGYWDTSEENIEKLKQLYSEVEDKIEGIDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="90102" PGL_stop="84767"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90102" e_stop="90010"/>
            <exon e_start="87340" e_stop="87235"/>
            <exon e_start="86672" e_stop="86595"/>
            <exon e_start="86472" e_stop="86342"/>
            <exon e_start="85876" e_stop="85752"/>
            <exon e_start="85127" e_stop="84767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.292" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.909" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90102" e_stop="90010" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.988">
            <gDNA_intron_boundary i_start="90009" i_stop="87341" i_length="2669"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87340" e_stop="87235" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="87234" i_stop="86673" i_length="562"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86672" e_stop="86595" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.940">
            <gDNA_intron_boundary i_start="86594" i_stop="86473" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86472" e_stop="86342" e_length="131"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.292">
            <gDNA_intron_boundary i_start="86341" i_stop="85877" i_length="465"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85876" e_stop="85752" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.909">
            <gDNA_intron_boundary i_start="85751" i_stop="85128" i_length="624"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85127" e_stop="84767" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90102" stop="90010"/>
              <exon start="87340" stop="87235"/>
              <exon start="86672" stop="86595"/>
              <exon start="86472" stop="86342"/>
              <exon start="85876" stop="85752"/>
              <exon start="85127" stop="84767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326505" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATGTCTTCAAATTTGGAATTGGAAGTGAGGTCTTCAGCTACAGTTCCTTCTCTGCAAGTTCCAACCTTTCATCATACCCCTTATTATTG : TGAGGAAAACATCTACCTGCTATGCAAAAAGCTATGTGATGACGGACTGGCAGATCCTAATGGTTCTGATCTGTTTGTTATTTTCATTTCCAATGAGAAGAAGCAG : ATTCCTCTGTGGCATCAGAAGGCTAGCCAGCGAGCAGAGGGAGTTATTCTGTGGGACTATCATGTCATCTGTGTACAG : AAGAAGAGAAATGAGAACTCTTCGTCACTAGTGTGGGATTTAGATTCAAGTCTTCCGTTTCCATCATCTCTTGGCACTTATGTCGCTGACAGCATTCGTCCATCAATTCAGATATTTTCTGAATTCAAAAG : GTTTTTTCGAGTTGTGCATGCCCCTATATTCCTCCGACACTTCGCATCAGATAGAAGACATATGAAGGATTCTGCTGGAAACTGGACTGCAGACCCGCCATCATATGAAGCTATTGTTGCTGAAG : ATGGAGCTGTACACAACCTGAACGAGTACATTACAGTCTCTCCCGATGATGTAGTGAAGAATGTGGAAGCTGATACCGTCAATGTTGTTCTCTCCGAGAAACTTGGTGTAGTAATTGGTGAAGATGATTTGTTGGGATTTTTCTCTTTGATTTCCTGATGAGAGTTGAGAAAAAACTTGCTAGCTTGAAAGATGAAATGATGATCTTGGATTTTTACATGTAAAAAGAAAAAGAAAGTGTCTTGTGAGAGTTTTTGCAAATGGAATGGAAAATATTCTTGTGTTAGACAAGTTCTTGTTTTTGGGGAGTTATTTTATTTTATAGAACTTGTATAGACATTTTGATGCCCGACCCCGTGCAT</gDNA_template>
            <first_frame> K  N  V  F  K  F  G  I  G  S  E  V  F  S  Y  S  S  F  S  A  S  S  N  L  S  S  Y  P  L  L  L  :  *  G  K  H  L  P  A  M  Q  K  A  M  *  *  R  T  G  R  S  *  W  F  *  S  V  C  Y  F  H  F  Q  *  E  E  A   : D  S  S  V  A  S  E  G  *  P  A  S  R  G  S  Y  S  V  G  L  S  C  H  L  C  T   : E  E  E  K  *  E  L  F  V  T  S  V  G  F  R  F  K  S  S  V  S  I  I  S  W  H  L  C  R  *  Q  H  S  S  I  N  S  D  I  F  *  I  Q  K  :  V  F  S  S  C  A  C  P  Y  I  P  P  T  L  R  I  R  *  K  T  Y  E  G  F  C  W  K  L  D  C  R  P  A  I  I  *  S  Y  C  C  *  R :   W  S  C  T  Q  P  E  R  V  H  Y  S  L  S  R  *  C  S  E  E  C  G  S  *  Y  R  Q  C  C  S  L  R  E  T  W  C  S  N  W  *  R  *  F  V  G  I  F  L  F  D  F  L  M  R  V  E  K  K  L  A  S  L  K  D  E  M  M  I  L  D  F  Y  M  *  K  E  K  E  S  V  L  *  E  F  L  Q  M  E  W  K  I  F  L  C  *  T  S  S  C  F  W  G  V  I  L  F  Y  R  T  C  I  D  I  L  M  P  D  P  V  H </first_frame>
            <second_frame>  K  M  S  S  N  L  E  L  E  V  R  S  S  A  T  V  P  S  L  Q  V  P  T  F  H  H  T  P  Y  Y  C :   E  E  N  I  Y  L  L  C  K  K  L  C  D  D  G  L  A  D  P  N  G  S  D  L  F  V  I  F  I  S  N  E  K  K  Q  :  I  P  L  W  H  Q  K  A  S  Q  R  A  E  G  V  I  L  W  D  Y  H  V  I  C  V  Q  :  K  K  R  N  E  N  S  S  S  L  V  W  D  L  D  S  S  L  P  F  P  S  S  L  G  T  Y  V  A  D  S  I  R  P  S  I  Q  I  F  S  E  F  K  R :   F  F  R  V  V  H  A  P  I  F  L  R  H  F  A  S  D  R  R  H  M  K  D  S  A  G  N  W  T  A  D  P  P  S  Y  E  A  I  V  A  E   : D  G  A  V  H  N  L  N  E  Y  I  T  V  S  P  D  D  V  V  K  N  V  E  A  D  T  V  N  V  V  L  S  E  K  L  G  V  V  I  G  E  D  D  L  L  G  F  F  S  L  I  S  *  *  E  L  R  K  N  L  L  A  *  K  M  K  *  *  S  W  I  F  T  C  K  K  K  K  K  V  S  C  E  S  F  C  K  W  N  G  K  Y  S  C  V  R  Q  V  L  V  F  G  E  L  F  Y  F  I  E  L  V  *  T  F  *  C  P  T  P  C   </second_frame>
            <third_frame>   K  C  L  Q  I  W  N  W  K  *  G  L  Q  L  Q  F  L  L  C  K  F  Q  P  F  I  I  P  L  I  I   : V  R  K  T  S  T  C  Y  A  K  S  Y  V  M  T  D  W  Q  I  L  M  V  L  I  C  L  L  F  S  F  P  M  R  R  S  R :   F  L  C  G  I  R  R  L  A  S  E  Q  R  E  L  F  C  G  T  I  M  S  S  V  Y  R :   R  R  E  M  R  T  L  R  H  *  C  G  I  *  I  Q  V  F  R  F  H  H  L  L  A  L  M  S  L  T  A  F  V  H  Q  F  R  Y  F  L  N  S  K   : G  F  F  E  L  C  M  P  L  Y  S  S  D  T  S  H  Q  I  E  D  I  *  R  I  L  L  E  T  G  L  Q  T  R  H  H  M  K  L  L  L  L  K  :  M  E  L  Y  T  T  *  T  S  T  L  Q  S  L  P  M  M  *  *  R  M  W  K  L  I  P  S  M  L  F  S  P  R  N  L  V  *  *  L  V  K  M  I  C  W  D  F  S  L  *  F  P  D  E  S  *  E  K  T  C  *  L  E  R  *  N  D  D  L  G  F  L  H  V  K  R  K  R  K  C  L  V  R  V  F  A  N  G  M  E  N  I  L  V  L  D  K  F  L  F  L  G  S  Y  F  I  L  *  N  L  Y  R  H  F  D  A  R  P  R  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90101" stop="90010"/>
                    <exon start="87340" stop="87235"/>
                    <exon start="86672" stop="86595"/>
                    <exon start="86472" stop="86342"/>
                    <exon start="85876" stop="85752"/>
                    <exon start="85127" stop="84970"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSSNLELEVRSSATVPSLQVPTFHHTPYYCEENIYLLCKKLCDDGLADPNGSDLFVIFISNEKKQIPLWHQKASQRAEGVILWDYHVICVQKKRNENSSSLVWDLDSSLPFPSSLGTYVADSIRPSIQIFSEFKRFFRVVHAPIFLRHFASDRRHMKDSAGNWTADPPSYEAIVAEDGAVHNLNEYITVSPDDVVKNVEADTVNVVLSEKLGVVIGEDDLLGFFSLIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="95846" PGL_stop="97547"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95846" e_stop="96403"/>
            <exon e_start="96473" e_stop="97547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.919"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="95846" e_stop="96403" e_length="558"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96404" i_stop="96472" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="0.923">
            <gDNA_exon_boundary e_start="96473" e_stop="97547" e_length="1075"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95846" stop="96403"/>
              <exon start="96473" stop="97503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97263" stop="97547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCTTTGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGTCTTGGTAAGGGAGAAGGCTTGAAGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCTGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTCGGGGATCGGGTGTCACGAACCGATACGTAGATTTAGGGGATCGGGTGTCACGAACTGACACGTAGATTTAGAGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGG : GGTGTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGAAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCGTGTTTTATACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTTCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTTAGTCGTTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGATATTATATTGAAACGTTAAGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTCTTTCGTGCTATTACTTGGGTACAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCGGATGGTTAGACCTAGAGCAACGATTGCGCCAACACCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> N  S  L  V  E  V  G  Y  G  F  H  A  F  I  V  N  S  *  *  R  M  I  C  I  G  S  I  V  N  P  A  M  C  L  I  V  C  M  H  E  R  D  Y  I  I  V  I  I  L  S  M  M  K  L  L  N  P  K  S  *  *  K  P  N  L  F  L  M  M  M  S  W  *  G  R  R  L  E  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  W  K  E  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  L  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  Y  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  R  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  :  G  V  T  N  R  H  I  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  S  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  F  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  C  F  I  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  I  V  F  N  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  F  R  I  L  L  V  *  S  F  D  R  R  C  S  C  D  D  D  F  Q  I  L  G  I  I  I  V  I  D  F  I  N  E  F  K  S  S  A  L  L  S  V  D  I  I  L  K  R  *  G  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  T  R  F  G  S  *  Q  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  F  R  A  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  R  M  V  R  P  R  A  T  I  A  P  T  P  T  S  A  R  Q  E  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  I  L  W  W  R  *  V  M  V  F  M  L  S  *  *  T  L  N  R  E  *  Y  V  L  V  V  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  *  A  *  *  S  Y  *  I  P  N  L  D  K  N  L  I  S  F  *  *  *  C  L  G  K  G  E  G  L  K  N  *  S  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  G  R  R  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  W  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  F  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  L  T  R  R  F  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G :   V  S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  I  E  E  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  R  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  R  V  L  Y  *  P  L  L  L  C  S  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G  L  D  L  L  L  Q  V  L  M  P  *  T  F  G  M  D  *  L  L  M  Y  F  *  L  L  E  Y  S  *  F  S  R  L  I  V  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  L  L  I  L  L  M  S  L  S  L  P  H  Y  F  L  L  I  L  Y  *  N  V  K  V  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  Q  P  G  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  P  F  F  L  S  S  F  V  L  L  L  G  Y  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  G  W  L  D  L  E  Q  R  L  R  Q  H  Q  H  R  Q  D  K  K  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   F  F  G  G  G  R  L  W  F  S  C  F  H  S  K  L  L  I  E  N  D  M  Y  W  *  Y  C  K  P  C  Y  V  L  N  C  M  H  A  *  T  *  L  Y  N  C  D  Y  I  K  H  D  E  V  I  E  S  Q  I  L  I  K  T  *  S  L  F  N  D  D  V  L  V  R  E  K  A  *  R  T  K  V  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  M  E  G  D  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  S  G  I  G  C  H  E  P  I  R  R  F  R  G  S  G  V  T  N  *  H  V  D  L  E  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S   : G  C  H  E  P  T  H  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  L  R  K  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  I  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  V  F  Y  T  D  P  Y  F  Y  V  L  F  L  F  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  K  S  *  C  L  E  L  S  A  W  T  S  F  L  C  I  F  S  F  *  N  T  L  S  L  V  V  *  S  *  M  F  L  *  *  *  L  P  D  F  G  D  N  N  S  Y  *  F  Y  *  *  V  *  V  F  R  I  T  F  C  *  Y  Y  I  E  T  L  R  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  N  P  V  W  V  V  T  N  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  L  S  C  Y  Y  L  G  T  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  T  *  S  N  D  C  A  N  T  N  I  G  K  T  R  S  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96749" stop="97045"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYLVYIDFYFELADDIYSVPCFILTPTFMFSSCLFVECSKRAIVFNSTVIQASLTTSEIQGELMLLAWTGSSSSSLDALNFRHGLASYVFLAFRILLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="100263" PGL_stop="97625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100263" e_stop="97625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="100263" e_stop="97625" e_length="2639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100263" stop="99551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99743" stop="99085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99674" stop="98917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99447" stop="98905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99271" stop="98941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99064" stop="98506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99060" stop="97625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGAGAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATTTAGCCAAAACTCACACTTGGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTACTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGCAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCTCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTCCTCAACAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAAAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAGAAACTCACGAACCACCGAAACCGACTTAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGCTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGCAAAGTCATACCCAAAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATATGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTGCCATGTTGTGATGTAGTGGCTCATGTTTTCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCTGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCCGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATTTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATGGGCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCGGATTGATCATCTCTGGGGTAGGTTGGGATGGAAATTCCTCATTTTGCACGTGTTCATTCTCCCCTTCCTCACCCTCTCTTACCACTTCCTCAGTTGGTGGAGGAGTCACCGCCCTAGTATCAGACGGGCT</gDNA_template>
            <first_frame> E  S  L  E  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  F  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  T  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  A  M  P  I  P  R  L  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  L  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  P  Q  Q  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  A  K  I  N  I  P  I  W  W  H  T  R  K  I  C  K  E  H  I  Q  K  L  T  N  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  W  R  K  Q  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  M  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  C  L  S  I  A  P  A  M  L  *  C  S  G  S  C  F  P  I  T  S  T  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  H  W  G  S  I  T  L  F  W  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  G  V  K  H  R  S  L  R  E  V  L  T  S  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  L  *  C  R  C  H  G  E  F  I  W  L  H  S  F  H  L  Y  H  E  I  Y  H  F  L  E  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  F  H  K  T  T  N  P  L  L  W  T  E  T  K  L  S  G  I  S  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  L  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  R  W  L  T  L  N  M  *  P  P  P  H  F  G  I  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  F  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  T  C  H  Y  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  G  L  I  I  S  G  V  G  W  D  G  N  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G   </first_frame>
            <second_frame>  N  P  L  R  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  F  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  Q  C  P  Y  L  V  *  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  S  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  F  L  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  R  N  T  S  R  N  S  R  T  T  E  T  D  L  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  A  L  A  L  Q  S  K  I  A  N  C  G  E  S  K  V  I  P  K  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  C  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  H  V  F  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  A  M  V  N  S  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  W  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  L  V  I  M  G  Q  *  S  D  V  E  M  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  G  P  D  P  D  Q  T  T  H  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  M  E  I  P  H  F  A  R  V  H  S  P  L  P  H  P  L  L  P  L  P  Q  L  V  E  E  S  P  P  *  Y  Q  T  G  </second_frame>
            <third_frame>   I  P  *  E  I  D  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  L  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  Y  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  S  S  T  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  C  K  N  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  P  P  K  P  T  *  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  L  *  H  Y  N  P  R  S  Q  I  V  E  K  A  K  S  Y  P  K  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  Y  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  L  S  V  H  C  P  C  H  V  V  M  *  W  L  M  F  S  H  H  L  D  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  P  L  G  V  Y  N  S  V  L  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  W  S  Q  A  *  V  S  Q  R  S  V  D  Q  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  S  L  M  S  M  P  W  *  I  H  L  A  S  L  L  P  P  L  P  R  N  L  P  L  L  G  R  I  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  L  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  E  W  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  P  L  V  D  T  Q  Y  V  T  A  T  T  F  W  H  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  F  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  W  A  S  S  Q  T  W  K  C  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  G  L  T  L  I  R  Q  P  T  K  I  S  E  N  R  I  D  H  L  W  G  R  L  G  W  K  F  L  I  L  H  V  F  I  L  P  F  L  T  L  S  Y  H  F  L  S  W  W  R  S  H  R  P  S  I  R  R  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98832" stop="98578"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSCFPITSTILVTTITSTTTSSRITASTMTTSTSSHWGSITLFWTIPPNMSSLPTSITLSGVKHRSLREVLTSLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99536" stop="99291"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSMQKSISLSGGIPGRSARNTSRNSRTTETDLIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99999" stop="99760"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSRGIRKTKRHHYKFAMPIPRLKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98031" stop="97792"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIVSILRFSTLEDWRFQFQELTEKFMLITCHYGPVVRRGNVPMSNEASIRGAIVAACCTSETGGVGAENTGGA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100067" stop="99852"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNSQCPYLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98522" stop="98310"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRNLFDVDAMVNSSGFTPSTSTTKSTTSWKDFAVAATCKAEIRNSDLNPFTKRRIRSCGLKQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97831" stop="97625"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRGLTLIRQPTKISENRIDHLWGRLGWKFLILHVFILPFLTLSYHFLSWWRSHRPSIRRA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="8"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99558" stop="99358"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNGASTRFKINAKINIPIWWHTRKICKEHIQKLTNHRNRLNRRYLGSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="98247" PGL_stop="99691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98247" e_stop="98419"/>
            <exon e_start="99164" e_stop="99691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.977"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="98247" e_stop="98419" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98420" i_stop="99163" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.913">
            <gDNA_exon_boundary e_start="99164" e_stop="99691" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98247" stop="98419"/>
              <exon start="99164" stop="99691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGATGTAATTTTGGGTATGACTTTGCTTTCTCCACAATTTGCGATCTTGGATTGTAATGCTAAAGCGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTAAGTCGGTTTCGGTGGTTCGTGAGTTTCTGGATGTGTTCCTTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGATTTTTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTGTTGAGGAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGAGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  R  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  F  G  Y  D  F  A  F  S  T  I  C  D  L  G  L  *  C  *  S  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  F  L  H  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  T  T  S  R  V  V  E  E  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  *  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  L  L  S  P  Q  F  A  I  L  D  C  N  A  K  A  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  K  S  V  S  V  V  R  E  F  L  D  V  F  L  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  R  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  E  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  F  V  S  V  H  K  S  G  F  V  V  L  *  K  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  S  K  :  K  W  M  I  L  M  *  F  W  V  *  L  C  F  L  H  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  I  F  A  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  H  N  F  K  S  C  *  G  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  R  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114C15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98248" stop="98419"/>
                    <exon start="99164" stop="99690"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEMDDFDVILGMTLLSPQFAILDCNAKAVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIKSVSVVREFLDVFLADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLRKGFIRPSASPWGAPVLFVKKKDESFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="101744" PGL_stop="101568"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101744" e_stop="101568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="101744" e_stop="101568" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101744" stop="101568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTCGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACTAAATTCTATCACACACGCACGAAGCATATCCTCCAATACTTGAATTGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  L  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  S  S  D  S  Y  Y  C  M  K  I  P  L  R  V  R  S  Y  P  N  G  H  *  I  L  S  H  T  H  E  A  Y  P  P  I  L  E  L  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  R  V  I  A  I  I  V  *  K  F  R  *  G  *  E  A  I  P  M  A  T  K  F  Y  H  T  R  T  K  H  I  L  Q  Y  L  N  C  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0114C15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="103973" PGL_stop="103636"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103973" e_stop="103636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="103973" e_stop="103636" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103973" stop="103636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCGATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  N  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  D  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  Q  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  M  C  R  F  V  T  P  D   </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  I  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  N  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  C  V  G  S  *  H  P  I  </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  R  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  R  D  T  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0114C15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 58 chains have been computed
$ 
$ memory statistics:
$ 264240 bytes spliced alignments in total
$ 28 spliced alignments have been stored
$ 9437 bytes was the average size of a spliced alignment
$ 23632 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1575 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 72 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:41:12
-->
