<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:27:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318068" ref_strand="+" ref_description="SGN-E318068 [cTOA-29-A6]">
      <seq>ttggttctcttacacaggcctctactattcgagttgggtctttcaatggagaggagatctatgctccctttaagagcatacttcccatggtcaatccagatgatgtagtttttggaggatgggacatcagcaacatgaatttggcagatgccatggcaagagctaaagtttttgacattgatcttcaaatgcaactgaggccgtacatggaatccatggtcccactgcctggtatctatgaccctgatttcattgctgcaaaccaaggctcacgtgctaacaatgtcatcaaaggaaccaagaaagaacaaattgatcaaattattaaggatattagggagtttaaggagaacaacaaagtggacagggtggtggtcctgtggactgccaacactgaaagatacagcagtgtggctgttggctttaatgataccatggaaaacctctttgcttctgtggatagaaatgaggctgaaatatctccttccaccttgtatgctattgcttgtattcttgaaaatgtacccttcatcaatggaagcccacaaaatacttttgtcccaggcctcattgatttggccatcaagaggaaacactttgattggtggtgatgactttaagagtggtcaaaccaagatgaagtcagtgctggttgatttccttggttggagctggtattaagccaacatcaatcgtgagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="7769" stop="5845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7469" g_stop="7381" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7380" i_stop="6971" i_length="410">
            <donor d_prob="0.913" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6970" g_stop="6825" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="231" r_length="142" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6824" i_stop="6775" i_length="50">
            <donor d_prob="0.855" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6774" g_stop="6687" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="328" r_length="97" r_score="0.761"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6686" i_stop="6607" i_length="80">
            <donor d_prob="0.651" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6606" g_stop="6370" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="564" r_length="236" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6369" i_stop="6261" i_length="109">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6260" g_stop="6145" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="682" r_length="118" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E318068" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7469" e_stop="7381"/>
          <exon e_start="6970" e_stop="6825"/>
          <exon e_start="6774" e_stop="6687"/>
          <exon e_start="6606" e_stop="6370"/>
          <exon e_start="6260" e_stop="6145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTCTCTTACACAGGCCTCTACTATTCGAGTTGGGTCCTTCAATGGACAGGAGATCTATACTTCCTTTAAGAGCATACTTCCCATGGTAACCTTTATTTGTTTTGAAATGACACTTTCTGGTGTTGGTTGTCACTTTTATATACTCTGTTTCATTTTTGACTTAACGCGCTGCTTAAAGAAGCTAAAGAATGAACGTTGTGATATGAAAGATGCAAAGTTGAAATTAGAAGTCTACATAAAAGAAAAAAAATTGTTTAACTTTAAAAGTTAACATAAAAAGAAAGAAATATTTTTTGTATACGGATAAAAGAAATATTGTTTTAGTCCTGTTTTGAATTGACACGGAGAGGTAAAGCATGAATCTTGTGCTAGAAAGACTTTTTTTTTCTAAAAAAAATATACTCTCTAAAAAAGGGAAGTAAGACAAACCAATGAGACGAGGATAAAATTTTTTCTGTTTGTTGATGTGTTTTTAATCAATTGATAATGAAATAGGTTAATCCATCCAGATGATGTAGTGTTTGGAGAATGGGACATCAGCAACATGAATTTGGCAGATGACATGGCAAGAGCTAATGTTTTTGACGTTGATCTTCAAAAGCAACTGAGGCCCTACATGGAATCCATGGTCCCATTCCCTGGTATCTATGACCCTGATTTCATTGCTGTAAACCATTCCCTGGTATCTATG---------ACCCTGATTTCATTGCTGCAAACCAAGGCTCACGTGCTAACATTGTCATCAAAGGAACCAAGAAAGATCAAGTTGATCAAATTATTAAGTATATTAGGTAAAACAGGGTTGTTTTATTATATCACAAACTATATAACCTTTTGGTTGCTAATTATAGTGTTGTTTTAGGGTATATTAGGGAGTTTAAGGAGAACAACAAAGTCGACAAGGTGGTGGTCCTGTGGACTGCCAACACCAAAAGATACAGCAGTGTGGTTGTTGGCTTTAATGATACCATGGAAAACCTCTTTGCTTCTGTGGATAGAAATGAGGCCGAAATATCTCCTTCCACCTTGTATGCTATTGCTGGTATTCTTGAAAATGTACCCTTCATCAATGGAAGCCCACAAAATACTTTTGTCCCAGGTATGTTCCAGTTTCAAATTAAATATCTTGCTTTGTTGTTGTTATTGTTGTTGTTTCTTTTGGAAATCAGTTGTGTGTTAGTCTTATGTATTCATTGAAAATTTGTTAGGCCTCATTGATTTGGCCATCAAGAGG-AACACTTAGATTGGTGGTGATAACTTTAAGAGTGGTCAAACCAAGATGAAGTCAGTGGTGGTTGATTTCCTT-TTTGGAGCTGGAATTAAG</genome_strand>
        <mrna_strand>TTGGTTCTCTTACACAGGCCTCTACTATTCGAGTTGGGTCTTTCAATGGAGAGGAGATCTATGCTCCCTTTAAGAGCATACTTCCCATG..........................................................................................................................................................................................................................................................................................................................................................................................................................G----TCAATCCAGATGATGTAGTTTTTGGAGGATGGGACATCAGCAACATGAATTTGGCAGATGCCATGGCAAGAGCTAAAGTTTTTGACATTGATCTTCAAATGCAACTGAGGCCGTACATGGAATCCATGGTCCCACTGCCTG..................................................GTATCTATGACCCTGATTTCATTGCTGCAAACCAAGGCTCACGTGCTAACAATGTCATCAAAGGAACCAAGAAAGAACAAATTGATCAAATTATTAA................................................................................GG-ATATTAGGGAGTTTAAGGAGAACAACAAAGTGGACAGGGTGGTGGTCCTGTGGACTGCCAACACTGAAAGATACAGCAGTGTGGCTGTTGGCTTTAATGATACCATGGAAAACCTCTTTGCTTCTGTGGATAGAAATGAGGCTGAAATATCTCCTTCCACCTTGTATGCTATTGCTTGTATTCTTGAAAATGTACCCTTCATCAATGGAAGCCCACAAAATACTTTTGTCCCAG.............................................................................................................GCCTCATTGATTTGGCCATCAAGAGGAAACACTTTGATTGGTGGTGATGACTTTAAGAGTGGTCAAACCAAGATGAAGTCAGTGCTGGTTGATTTCCTTGGTTGGAGCTGGTATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729326" ref_strand="+" ref_description="SGN-E729326 [LA20CH06]">
      <seq>gcaagagctaaagtttttgacattgancttcaaatgcaactgaggccgtacatggaatccatggtcccactgcctggtatctatgaccctgatttcattgctgcaaaccaaggctcacgtgctaacaatgtcatcaaaggaaccaagaaagaacaaattgatcaaattattaaggatattagggagtttaaggagaacaacaaagtggacagggtggtggtcctgtggactgccaacactgaaagatacagcagtgtggctgttggccttaatgataccatggaaaacctctttgcttctgtggatagaaatgaggctgaaatatctccttccaccttgtatgctattgcttgtattcttgaaaatgtacccttcatcaatggaagcccacaaaatacttttgtcccaggcctcattgatttggccatcaagaggaacactttgattggtggtgatgactttaacagtggtcaaaccaatatgaaatcagcgctggttgatttccttgttggagctggtattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="7200" stop="5846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6900" g_stop="6838" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6837" i_stop="6788" i_length="50">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6787" g_stop="6687" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="173" r_length="110" r_score="0.792"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6686" i_stop="6607" i_length="80">
            <donor d_prob="0.651" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6606" g_stop="6370" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="409" r_length="236" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6369" i_stop="6261" i_length="109">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6260" g_stop="6146" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="524" r_length="115" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E729326" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6900" e_stop="6838"/>
          <exon e_start="6787" e_stop="6687"/>
          <exon e_start="6606" e_stop="6370"/>
          <exon e_start="6260" e_stop="6146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGCTAATGTTTTTGACGTTGATCTTCAAAAGCAACTGAGGCCCTACATGGAATCCATGGTCCCATTCCCTGGTATCTATGACCCTGATTTCATTGCTGTAAACCATTC---------CCTGGTATCTATGACCCTGATTTCATTGCTGCAAACCAAGGCTCACGTGCTAACATTGTCATCAAAGGAACCAAGAAAGATCAAGTTGATCAAATTATTAAGTATATTAGGTAAAACAGGGTTGTTTTATTATATCACAAACTATATAACCTTTTGGTTGCTAATTATAGTGTTGTTTTAGGGTATATTAGGGAGTTTAAGGAGAACAACAAAGTCGACAAGGTGGTGGTCCTGTGGACTGCCAACACCAAAAGATACAGCAGTGTGGTTGTTGGCTTTAATGATACCATGGAAAACCTCTTTGCTTCTGTGGATAGAAATGAGGCCGAAATATCTCCTTCCACCTTGTATGCTATTGCTGGTATTCTTGAAAATGTACCCTTCATCAATGGAAGCCCACAAAATACTTTTGTCCCAGGTATGTTCCAGTTTCAAATTAAATATCTTGCTTTGTTGTTGTTATTGTTGTTGTTTCTTTTGGAAATCAGTTGTGTGTTAGTCTTATGTATTCATTGAAAATTTGTTAGGCCTCATTGATTTGGCCATCAAGAGGAACACTTAGATTGGTGGTGATAACTTTAAGAGTGGTCAAACCAAGATGAAGTCAGTGGTGGTTGATTTCCTTTTTGGAGCTGGAATTAA</genome_strand>
        <mrna_strand>GCAAGAGCTAAAGTTTTTGACATTGANCTTCAAATGCAACTGAGGCCGTACATGGAATCCATG..................................................GTCCCACTGCCTGGTATCTATGACCCTGATTTCATTGCTGCAAACCAAGGCTCACGTGCTAACAATGTCATCAAAGGAACCAAGAAAGAACAAATTGATCAAATTATTAA................................................................................GG-ATATTAGGGAGTTTAAGGAGAACAACAAAGTGGACAGGGTGGTGGTCCTGTGGACTGCCAACACTGAAAGATACAGCAGTGTGGCTGTTGGCCTTAATGATACCATGGAAAACCTCTTTGCTTCTGTGGATAGAAATGAGGCTGAAATATCTCCTTCCACCTTGTATGCTATTGCTTGTATTCTTGAAAATGTACCCTTCATCAATGGAAGCCCACAAAATACTTTTGTCCCAG.............................................................................................................GCCTCATTGATTTGGCCATCAAGAGGAACACTTTGATTGGTGGTGATGACTTTAACAGTGGTCAAACCAATATGAAATCAGCGCTGGTTGATTTCCTTGTTGGAGCTGGTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448496" ref_strand="+" ref_description="SGN-E448496 [cSTS-3-I22]">
      <seq>ggaatttcatgggctaccaaggataaagtgcagcaagccaattactttggctctcttacacaggcctctactattcgagttggttccttcaatggagaggagatctatgccccctttaagagcatacttcccatggtcaatccagatgatgtagtgtttggaggatgggacatcagcaacatgaatttggcagatgccatggcaagggctaaagtttttgacattgatcttcaaaagcagctgaggccctacatggaatccatggtcccactgcctggtatctatgaccctgatttcattgctgcaaaccaaggctcacgtgctaacaatgtcattaaaggaaccaagaaagaacaaattgatcaaatcattaaggatattagggagtttaaggagacaacaaagtggacaaggtggtggttttgtggactgctaacactgaaagatacagcagtgtggctgttggccttaatgataccatggaaaacctctttgcttctgtggatagaaatgaggctgaaatatctccttccaccttgtatgctattgcttgtattcttgaaaatgtgcccttcatcaatggaagcccacaaaacacttttgtcccaggcctcattgatttggccatcaagaggaacactttgattggtggtgatgactttaagagtggtcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="7812" stop="5894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7512" g_stop="7381" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7380" i_stop="6971" i_length="410">
            <donor d_prob="0.913" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6970" g_stop="6825" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="277" r_length="142" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6824" i_stop="6775" i_length="50">
            <donor d_prob="0.855" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6774" g_stop="6687" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="374" r_length="97" r_score="0.739"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6686" i_stop="6607" i_length="80">
            <donor d_prob="0.651" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6606" g_stop="6370" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="609" r_length="235" r_score="0.941"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6369" i_stop="6261" i_length="109">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6260" g_stop="6194" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="676" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E448496" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7512" e_stop="7381"/>
          <exon e_start="6970" e_stop="6825"/>
          <exon e_start="6774" e_stop="6687"/>
          <exon e_start="6606" e_stop="6370"/>
          <exon e_start="6260" e_stop="6194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTTCATGGGCTACCAAGGAT---GTGCAGCAAGCCAATTACTTTGGTTCTCTTACACAGGCCTCTACTATTCGAGTTGGGTCCTTCAATGGACAGGAGATCTATACTTCCTTTAAGAGCATACTTCCCATGGTAACCTTTATTTGTTTTGAAATGACACTTTCTGGTGTTGGTTGTCACTTTTATATACTCTGTTTCATTTTTGACTTAACGCGCTGCTTAAAGAAGCTAAAGAATGAACGTTGTGATATGAAAGATGCAAAGTTGAAATTAGAAGTCTACATAAAAGAAAAAAAATTGTTTAACTTTAAAAGTTAACATAAAAAGAAAGAAATATTTTTTGTATACGGATAAAAGAAATATTGTTTTAGTCCTGTTTTGAATTGACACGGAGAGGTAAAGCATGAATCTTGTGCTAGAAAGACTTTTTTTTTCTAAAAAAAATATACTCTCTAAAAAAGGGAAGTAAGACAAACCAATGAGACGAGGATAAAATTTTTTCTGTTTGTTGATGTGTTTTTAATCAATTGATAATGAAATAGGTTAATCCATCCAGATGATGTAGTGTTTGGAGAATGGGACATCAGCAACATGAATTTGGCAGATGACATGGCAAGAGCTAATGTTTTTGACGTTGATCTTCAAAAGCAACTGAGGCCCTACATGGAATCCATGGTCCCATTCCCTGGTATCTATGACCCTGATTTCATTGCTGTAAACCATTCCCTGGTATCTATG---------ACCCTGATTTCATTGCTGCAAACCAAGGCTCACGTGCTAACATTGTCATCAAAGGAACCAAGAAAGATCAAGTTGATCAAATTATTAAGTATATTAGGTAAAACAGGGTTGTTTTATTATATCACAAACTATATAACCTTTTGGTTGCTAATTATAGTGTTGTTTTAGGGTATATTAGGGAGTTTAAGGAGAACAACAAAGTCGACAAGGTGGTGGTCCTGTGGACTGCCAACACCAAAAGATACAGCAGTGTGGTTGTTGGCTTTAATGATACCATGGAAAACCTCTTTGCTTCTGTGGATAGAAATGAGGCCGAAATATCTCCTTCCACCTTGTATGCTATTGCTGGTATTCTTGAAAATGTACCCTTCATCAATGGAAGCCCACAAAATACTTTTGTCCCAGGTATGTTCCAGTTTCAAATTAAATATCTTGCTTTGTTGTTGTTATTGTTGTTGTTTCTTTTGGAAATCAGTTGTGTGTTAGTCTTATGTATTCATTGAAAATTTGTTAGGCCTCATTGATTTGGCCATCAAGAGGAACACTTAGATTGGTGGTGATAACTTTAAGAGTGGTCAAAC</genome_strand>
        <mrna_strand>GGAATTTCATGGGCTACCAAGGATAAAGTGCAGCAAGCCAATTACTTTGGCTCTCTTACACAGGCCTCTACTATTCGAGTTGGTTCCTTCAATGGAGAGGAGATCTATGCCCCCTTTAAGAGCATACTTCCCATG..........................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAT----CCAGATGATGTAGTGTTTGGAGGATGGGACATCAGCAACATGAATTTGGCAGATGCCATGGCAAGGGCTAAAGTTTTTGACATTGATCTTCAAAAGCAGCTGAGGCCCTACATGGAATCCATGGTCCCACTGCCTG..................................................GTATCTATGACCCTGATTTCATTGCTGCAAACCAAGGCTCACGTGCTAACAATGTCATTAAAGGAACCAAGAAAGAACAAATTGATCAAATCATTAA................................................................................GG-ATATTAGGGAGTTTAAGGAG-ACAACAAAGTGGACAAGGTGGTGGTTTTGTGGACTGCTAACACTGAAAGATACAGCAGTGTGGCTGTTGGCCTTAATGATACCATGGAAAACCTCTTTGCTTCTGTGGATAGAAATGAGGCTGAAATATCTCCTTCCACCTTGTATGCTATTGCTTGTATTCTTGAAAATGTGCCCTTCATCAATGGAAGCCCACAAAACACTTTTGTCCCAG.............................................................................................................GCCTCATTGATTTGGCCATCAAGAGGAACACTTTGATTGGTGGTGATGACTTTAAGAGTGGTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317337" ref_strand="+" ref_description="SGN-E317337 [cTOA-28-E19]">
      <seq>ggaggtgttattgctaatagagaaggaatttcatgggctaccaaggataaggtgcagcaagccaattactttggttctcttacacaggcctctactattcgagttgggtctttcaatggagaggagatctatgctccctttaagagcatacttcccatggtcaatccagatgatgtagtttttggaggatgggacatcagcaacatgaatttggcagatgccatggcaagagctaaagtttttgacattgatcttcaaatgcaactgaggccgtacatggaatccatggtcccactgcctggtatctatgaccctgatttcattgctgcaaaccaaggctcacgtgctaacaatgtcatcaaaggaaccaagaaagaacaaattgatcaaattattaaggatattagggagtttaaggagaacaacaaagtggacagggtggtggtcctgtggactgccaacactgaaagatacagcagtgtggctgttggctttaatgataccatggaaaacctctttgcttctgtggatagaaatgacgctgaaatatctccttccaccttgtatgctattgcttgtattcttgagaatgtacccttcatcaatggaagcccacaagatacttttgtcccaggcctcattgatttggccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="7928" stop="5942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7628" g_stop="7606" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7605" i_stop="7514" i_length="92">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7513" g_stop="7381" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="159" r_length="136" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7380" i_stop="6971" i_length="410">
            <donor d_prob="0.913" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6970" g_stop="6825" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="301" r_length="142" r_score="0.904"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6824" i_stop="6775" i_length="50">
            <donor d_prob="0.855" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6774" g_stop="6687" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="398" r_length="97" r_score="0.761"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6686" i_stop="6607" i_length="80">
            <donor d_prob="0.651" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6606" g_stop="6370" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="634" r_length="236" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6369" i_stop="6261" i_length="109">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6260" g_stop="6242" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="653" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E317337" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7628" e_stop="7606"/>
          <exon e_start="7513" e_stop="7381"/>
          <exon e_start="6970" e_stop="6825"/>
          <exon e_start="6774" e_stop="6687"/>
          <exon e_start="6606" e_stop="6370"/>
          <exon e_start="6260" e_stop="6242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTGTTATTGCTAACAGAGAGTGAGTTTTTTTTTTCTCTTTTTGCTCTGTAATTTCTCTATGTCTTTGTCATGATTCTTGCATAAACAATAGTTGTTGTTGAAAATTGGCAGAGGAATTTCATGGGCTACCAAGGAT---GTGCAGCAAGCCAATTACTTTGGTTCTCTTACACAGGCCTCTACTATTCGAGTTGGGTCCTTCAATGGACAGGAGATCTATACTTCCTTTAAGAGCATACTTCCCATGGTAACCTTTATTTGTTTTGAAATGACACTTTCTGGTGTTGGTTGTCACTTTTATATACTCTGTTTCATTTTTGACTTAACGCGCTGCTTAAAGAAGCTAAAGAATGAACGTTGTGATATGAAAGATGCAAAGTTGAAATTAGAAGTCTACATAAAAGAAAAAAAATTGTTTAACTTTAAAAGTTAACATAAAAAGAAAGAAATATTTTTTGTATACGGATAAAAGAAATATTGTTTTAGTCCTGTTTTGAATTGACACGGAGAGGTAAAGCATGAATCTTGTGCTAGAAAGACTTTTTTTTTCTAAAAAAAATATACTCTCTAAAAAAGGGAAGTAAGACAAACCAATGAGACGAGGATAAAATTTTTTCTGTTTGTTGATGTGTTTTTAATCAATTGATAATGAAATAGGTTAATCCATCCAGATGATGTAGTGTTTGGAGAATGGGACATCAGCAACATGAATTTGGCAGATGACATGGCAAGAGCTAATGTTTTTGACGTTGATCTTCAAAAGCAACTGAGGCCCTACATGGAATCCATGGTCCCATTCCCTGGTATCTATGACCCTGATTTCATTGCTGTAAACCATTCCCTGGTATCTATG---------ACCCTGATTTCATTGCTGCAAACCAAGGCTCACGTGCTAACATTGTCATCAAAGGAACCAAGAAAGATCAAGTTGATCAAATTATTAAGTATATTAGGTAAAACAGGGTTGTTTTATTATATCACAAACTATATAACCTTTTGGTTGCTAATTATAGTGTTGTTTTAGGGTATATTAGGGAGTTTAAGGAGAACAACAAAGTCGACAAGGTGGTGGTCCTGTGGACTGCCAACACCAAAAGATACAGCAGTGTGGTTGTTGGCTTTAATGATACCATGGAAAACCTCTTTGCTTCTGTGGATAGAAATGAGGCCGAAATATCTCCTTCCACCTTGTATGCTATTGCTGGTATTCTTGAAAATGTACCCTTCATCAATGGAAGCCCACAAAATACTTTTGTCCCAGGTATGTTCCAGTTTCAAATTAAATATCTTGCTTTGTTGTTGTTATTGTTGTTGTTTCTTTTGGAAATCAGTTGTGTGTTAGTCTTATGTATTCATTGAAAATTTGTTAGGCCTCATTGATTTGGCCAT</genome_strand>
        <mrna_strand>GGAGGTGTTATTGCTAATAGAGA............................................................................................AGGAATTTCATGGGCTACCAAGGATAAGGTGCAGCAAGCCAATTACTTTGGTTCTCTTACACAGGCCTCTACTATTCGAGTTGGGTCTTTCAATGGAGAGGAGATCTATGCTCCCTTTAAGAGCATACTTCCCATG..........................................................................................................................................................................................................................................................................................................................................................................................................................G----TCAATCCAGATGATGTAGTTTTTGGAGGATGGGACATCAGCAACATGAATTTGGCAGATGCCATGGCAAGAGCTAAAGTTTTTGACATTGATCTTCAAATGCAACTGAGGCCGTACATGGAATCCATGGTCCCACTGCCTG..................................................GTATCTATGACCCTGATTTCATTGCTGCAAACCAAGGCTCACGTGCTAACAATGTCATCAAAGGAACCAAGAAAGAACAAATTGATCAAATTATTAA................................................................................GG-ATATTAGGGAGTTTAAGGAGAACAACAAAGTGGACAGGGTGGTGGTCCTGTGGACTGCCAACACTGAAAGATACAGCAGTGTGGCTGTTGGCTTTAATGATACCATGGAAAACCTCTTTGCTTCTGTGGATAGAAATGACGCTGAAATATCTCCTTCCACCTTGTATGCTATTGCTTGTATTCTTGAGAATGTACCCTTCATCAATGGAAGCCCACAAGATACTTTTGTCCCAG.............................................................................................................GCCTCATTGATTTGGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342171" ref_strand="+" ref_description="SGN-E342171 [cTOF-10-N11]">
      <seq>tgaattcaaaactgatgttcatgttccaaaattaggagttatgcttgttggatggggtggaaacaatggttcagccttgaccggaggtgttattgctaatagagaaggaatttcatgggctaccaaggataaggtgcagcaagccaattactttggttctcttacacaggcctctactattcgagttgggtctttcaatggagaggagatctatgctccctttaagagcatacttcccatggtcaatccagatgatgtagtttttggaggatgggacatcagcaacatgaatttggcagatgccatggcaagagctaaagtttttgacattgatcttcaaatgcaactgaggccgtacatggaatccatggtcccactgcctggtatctatgaccctgatttcattgctgcaaaccaaggctcacgtgctaacaatgtcatcaaaggaaccaagaaagaacaaattgatcaaattattaaggantattagggagtttaaggagaacaacaaagtggacagggtgggtggtcctgtggactgccaacactgaaagatacagcagtgtgggctgttggctttaatgataccatggaaaacctctttgcttctgtggatagaaatgaggctgaaatatctccttccaccttgtatgctattgcttgtattcttgaaaatgtacccttcatcaatggaagcccacaaataacttttgtcccaggcctcattgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="7956" stop="6056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7673" g_stop="7606" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="105" r_length="69" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7605" i_stop="7514" i_length="92">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7513" g_stop="7381" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="241" r_length="136" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7380" i_stop="6971" i_length="410">
            <donor d_prob="0.913" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6970" g_stop="6825" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="383" r_length="142" r_score="0.904"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6824" i_stop="6775" i_length="50">
            <donor d_prob="0.855" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6774" g_stop="6687" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="480" r_length="97" r_score="0.761"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6686" i_stop="6607" i_length="80">
            <donor d_prob="0.651" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6606" g_stop="6370" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="719" r_length="239" r_score="0.937"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6369" i_stop="6261" i_length="109">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6260" g_stop="6247" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="733" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E342171" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7673" e_stop="7606"/>
          <exon e_start="7513" e_stop="7381"/>
          <exon e_start="6970" e_stop="6825"/>
          <exon e_start="6774" e_stop="6687"/>
          <exon e_start="6606" e_stop="6370"/>
          <exon e_start="6260" e_stop="6247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATGCTTGTTGGA-CGGGTGGAAACAATGGTTCAGCCTTGACTGGAGGTGTTATTGCTAACAGAGAGTGAGTTTTTTTTTTCTCTTTTTGCTCTGTAATTTCTCTATGTCTTTGTCATGATTCTTGCATAAACAATAGTTGTTGTTGAAAATTGGCAGAGGAATTTCATGGGCTACCAAGGAT---GTGCAGCAAGCCAATTACTTTGGTTCTCTTACACAGGCCTCTACTATTCGAGTTGGGTCCTTCAATGGACAGGAGATCTATACTTCCTTTAAGAGCATACTTCCCATGGTAACCTTTATTTGTTTTGAAATGACACTTTCTGGTGTTGGTTGTCACTTTTATATACTCTGTTTCATTTTTGACTTAACGCGCTGCTTAAAGAAGCTAAAGAATGAACGTTGTGATATGAAAGATGCAAAGTTGAAATTAGAAGTCTACATAAAAGAAAAAAAATTGTTTAACTTTAAAAGTTAACATAAAAAGAAAGAAATATTTTTTGTATACGGATAAAAGAAATATTGTTTTAGTCCTGTTTTGAATTGACACGGAGAGGTAAAGCATGAATCTTGTGCTAGAAAGACTTTTTTTTTCTAAAAAAAATATACTCTCTAAAAAAGGGAAGTAAGACAAACCAATGAGACGAGGATAAAATTTTTTCTGTTTGTTGATGTGTTTTTAATCAATTGATAATGAAATAGGTTAATCCATCCAGATGATGTAGTGTTTGGAGAATGGGACATCAGCAACATGAATTTGGCAGATGACATGGCAAGAGCTAATGTTTTTGACGTTGATCTTCAAAAGCAACTGAGGCCCTACATGGAATCCATGGTCCCATTCCCTGGTATCTATGACCCTGATTTCATTGCTGTAAACCATTCCCTGGTATCTATG---------ACCCTGATTTCATTGCTGCAAACCAAGGCTCACGTGCTAACATTGTCATCAAAGGAACCAAGAAAGATCAAGTTGATCAAATTATTAAGTATATTAGGTAAAACAGGGTTGTTTTATTATATCACAAACTATATAACCTTTTGGTTGCTAATTATAGTGTTGTTTTAGGGTATATTAGGGAGTTTAAGGAGAACAACAAAGTCGACAAGGT-GGTGGTCCTGTGGACTGCCAACACCAAAAGATACAGCAGTGT-GGTTGTTGGCTTTAATGATACCATGGAAAACCTCTTTGCTTCTGTGGATAGAAATGAGGCCGAAATATCTCCTTCCACCTTGTATGCTATTGCTGGTATTCTTGAAAATGTACCCTTCATCAATGGAAGCCCACAAAATACTTTTGTCCCAGGTATGTTCCAGTTTCAAATTAAATATCTTGCTTTGTTGTTGTTATTGTTGTTGTTTCTTTTGGAAATCAGTTGTGTGTTAGTCTTATGTATTCATTGAAAATTTGTTAGGCCTCATTGATTTG</genome_strand>
        <mrna_strand>AGTTATGCTTGTTGGATGGGGTGGAAACAATGGTTCAGCCTTGACCGGAGGTGTTATTGCTAATAGAGA............................................................................................AGGAATTTCATGGGCTACCAAGGATAAGGTGCAGCAAGCCAATTACTTTGGTTCTCTTACACAGGCCTCTACTATTCGAGTTGGGTCTTTCAATGGAGAGGAGATCTATGCTCCCTTTAAGAGCATACTTCCCATG..........................................................................................................................................................................................................................................................................................................................................................................................................................G----TCAATCCAGATGATGTAGTTTTTGGAGGATGGGACATCAGCAACATGAATTTGGCAGATGCCATGGCAAGAGCTAAAGTTTTTGACATTGATCTTCAAATGCAACTGAGGCCGTACATGGAATCCATGGTCCCACTGCCTG..................................................GTATCTATGACCCTGATTTCATTGCTGCAAACCAAGGCTCACGTGCTAACAATGTCATCAAAGGAACCAAGAAAGAACAAATTGATCAAATTATTAA................................................................................GGANTATTAGGGAGTTTAAGGAGAACAACAAAGTGGACAGGGTGGGTGGTCCTGTGGACTGCCAACACTGAAAGATACAGCAGTGTGGGCTGTTGGCTTTAATGATACCATGGAAAACCTCTTTGCTTCTGTGGATAGAAATGAGGCTGAAATATCTCCTTCCACCTTGTATGCTATTGCTTGTATTCTTGAAAATGTACCCTTCATCAATGGAAGCCCACAAATAACTTTTGTCCCAG.............................................................................................................GCCTCATTGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737642" ref_strand="+" ref_description="SGN-E737642 [LC10CG01]">
      <seq>catgttccaaaattaggagttatgcttgttggatggggtggaaacaatggttcagccttgaccggaggtgttattgctaatagagaaggaatttcatgggctaccaaggataaggtgcagcaagccaattactttggttctcttacacaggcctctactattcgagttgggtctttcaatggagaggagatctatgctccctttaagagcatacttcccatggtcaatccagatgatgtagtttttggaggatgggacatcagcaacatgaatttggcagatgccatggcaagagctaaagtttttgacattgatcttcaaatgcaactgaggccgtacatggaatccatggtcccactgcctggtatctatgaccctgatttcattgctgcaaaccaaggctcacgtgctaacaatgtcatcaaaggaaccaagaaagaacaaattgatcaaattattaaggatattagggagtttaaggagaacaacaaagtggacagggtggtggtcctgtggactgccaacactgaaagatacagcagtgtggctgttggccttaatgataccatggaaaacctctttgcttctgtggatagaaatgaggctgaaatatctccttccaccttgtatgctattgcttgtattcttgaaaatgtacccttcatcaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="7956" stop="6095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7673" g_stop="7606" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="86" r_length="69" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7605" i_stop="7514" i_length="92">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7513" g_stop="7381" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="222" r_length="136" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7380" i_stop="6971" i_length="410">
            <donor d_prob="0.913" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6970" g_stop="6825" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="364" r_length="142" r_score="0.904"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6824" i_stop="6775" i_length="50">
            <donor d_prob="0.855" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6774" g_stop="6687" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="461" r_length="97" r_score="0.761"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6686" i_stop="6607" i_length="80">
            <donor d_prob="0.651" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6606" g_stop="6395" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="672" r_length="211" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E737642" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7673" e_stop="7606"/>
          <exon e_start="7513" e_stop="7381"/>
          <exon e_start="6970" e_stop="6825"/>
          <exon e_start="6774" e_stop="6687"/>
          <exon e_start="6606" e_stop="6395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATGCTTGTTGGA-CGGGTGGAAACAATGGTTCAGCCTTGACTGGAGGTGTTATTGCTAACAGAGAGTGAGTTTTTTTTTTCTCTTTTTGCTCTGTAATTTCTCTATGTCTTTGTCATGATTCTTGCATAAACAATAGTTGTTGTTGAAAATTGGCAGAGGAATTTCATGGGCTACCAAGGAT---GTGCAGCAAGCCAATTACTTTGGTTCTCTTACACAGGCCTCTACTATTCGAGTTGGGTCCTTCAATGGACAGGAGATCTATACTTCCTTTAAGAGCATACTTCCCATGGTAACCTTTATTTGTTTTGAAATGACACTTTCTGGTGTTGGTTGTCACTTTTATATACTCTGTTTCATTTTTGACTTAACGCGCTGCTTAAAGAAGCTAAAGAATGAACGTTGTGATATGAAAGATGCAAAGTTGAAATTAGAAGTCTACATAAAAGAAAAAAAATTGTTTAACTTTAAAAGTTAACATAAAAAGAAAGAAATATTTTTTGTATACGGATAAAAGAAATATTGTTTTAGTCCTGTTTTGAATTGACACGGAGAGGTAAAGCATGAATCTTGTGCTAGAAAGACTTTTTTTTTCTAAAAAAAATATACTCTCTAAAAAAGGGAAGTAAGACAAACCAATGAGACGAGGATAAAATTTTTTCTGTTTGTTGATGTGTTTTTAATCAATTGATAATGAAATAGGTTAATCCATCCAGATGATGTAGTGTTTGGAGAATGGGACATCAGCAACATGAATTTGGCAGATGACATGGCAAGAGCTAATGTTTTTGACGTTGATCTTCAAAAGCAACTGAGGCCCTACATGGAATCCATGGTCCCATTCCCTGGTATCTATGACCCTGATTTCATTGCTGTAAACCATTCCCTGGTATCTATG---------ACCCTGATTTCATTGCTGCAAACCAAGGCTCACGTGCTAACATTGTCATCAAAGGAACCAAGAAAGATCAAGTTGATCAAATTATTAAGTATATTAGGTAAAACAGGGTTGTTTTATTATATCACAAACTATATAACCTTTTGGTTGCTAATTATAGTGTTGTTTTAGGGTATATTAGGGAGTTTAAGGAGAACAACAAAGTCGACAAGGTGGTGGTCCTGTGGACTGCCAACACCAAAAGATACAGCAGTGTGGTTGTTGGCTTTAATGATACCATGGAAAACCTCTTTGCTTCTGTGGATAGAAATGAGGCCGAAATATCTCCTTCCACCTTGTATGCTATTGCTGGTATTCTTGAAAATGTACCCTTCATCAATGGA</genome_strand>
        <mrna_strand>AGTTATGCTTGTTGGATGGGGTGGAAACAATGGTTCAGCCTTGACCGGAGGTGTTATTGCTAATAGAGA............................................................................................AGGAATTTCATGGGCTACCAAGGATAAGGTGCAGCAAGCCAATTACTTTGGTTCTCTTACACAGGCCTCTACTATTCGAGTTGGGTCTTTCAATGGAGAGGAGATCTATGCTCCCTTTAAGAGCATACTTCCCATG..........................................................................................................................................................................................................................................................................................................................................................................................................................G----TCAATCCAGATGATGTAGTTTTTGGAGGATGGGACATCAGCAACATGAATTTGGCAGATGCCATGGCAAGAGCTAAAGTTTTTGACATTGATCTTCAAATGCAACTGAGGCCGTACATGGAATCCATGGTCCCACTGCCTG..................................................GTATCTATGACCCTGATTTCATTGCTGCAAACCAAGGCTCACGTGCTAACAATGTCATCAAAGGAACCAAGAAAGAACAAATTGATCAAATTATTAA................................................................................GG-ATATTAGGGAGTTTAAGGAGAACAACAAAGTGGACAGGGTGGTGGTCCTGTGGACTGCCAACACTGAAAGATACAGCAGTGTGGCTGTTGGCCTTAATGATACCATGGAAAACCTCTTTGCTTCTGTGGATAGAAATGAGGCTGAAATATCTCCTTCCACCTTGTATGCTATTGCTTGTATTCTTGAAAATGTACCCTTCATCAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747163" ref_strand="+" ref_description="SGN-E747163 [GI|10185841]">
      <seq>gtctttcaatggagaggagatctatgctccctttaagagcatacttcccatggtcaatccagatgatgtagtttttggaggatgggacatcagcaacatgaatttggcagatgccatggcaagagctaaagtttttgacattgaccttcaaatgcaactgaggccgtacatggaatccatggtcccactgcctggtatctatgaccctgatttcattgctgcaaaccaaggctcacgtgctaacaatgtcatcaaaggaaccaagaaagaacaaattgatcaaattattaaggatattagggagtttaaggagaacaacaaagtggacagggtggtggtcctgtggactgccaacactgaaagatacagcagtgtggctgttggctttaatgataccatggaaaacctttttgcttctgtggatagaaatgaggctgaaatatctccttccaccttgtatgctattgcttgtattcttgaaaatgtacccttcatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="7732" stop="6098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7432" g_stop="7381" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7380" i_stop="6971" i_length="410">
            <donor d_prob="0.913" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6970" g_stop="6825" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="194" r_length="142" r_score="0.897"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6824" i_stop="6775" i_length="50">
            <donor d_prob="0.855" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6774" g_stop="6687" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="291" r_length="97" r_score="0.761"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6686" i_stop="6607" i_length="80">
            <donor d_prob="0.651" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6606" g_stop="6398" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="499" r_length="208" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E747163" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7432" e_stop="7381"/>
          <exon e_start="6970" e_stop="6825"/>
          <exon e_start="6774" e_stop="6687"/>
          <exon e_start="6606" e_stop="6398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTTCAATGGACAGGAGATCTATACTTCCTTTAAGAGCATACTTCCCATGGTAACCTTTATTTGTTTTGAAATGACACTTTCTGGTGTTGGTTGTCACTTTTATATACTCTGTTTCATTTTTGACTTAACGCGCTGCTTAAAGAAGCTAAAGAATGAACGTTGTGATATGAAAGATGCAAAGTTGAAATTAGAAGTCTACATAAAAGAAAAAAAATTGTTTAACTTTAAAAGTTAACATAAAAAGAAAGAAATATTTTTTGTATACGGATAAAAGAAATATTGTTTTAGTCCTGTTTTGAATTGACACGGAGAGGTAAAGCATGAATCTTGTGCTAGAAAGACTTTTTTTTTCTAAAAAAAATATACTCTCTAAAAAAGGGAAGTAAGACAAACCAATGAGACGAGGATAAAATTTTTTCTGTTTGTTGATGTGTTTTTAATCAATTGATAATGAAATAGGTTAATCCATCCAGATGATGTAGTGTTTGGAGAATGGGACATCAGCAACATGAATTTGGCAGATGACATGGCAAGAGCTAATGTTTTTGACGTTGATCTTCAAAAGCAACTGAGGCCCTACATGGAATCCATGGTCCCATTCCCTGGTATCTATGACCCTGATTTCATTGCTGTAAACCATTCCCTGGTATCTATG---------ACCCTGATTTCATTGCTGCAAACCAAGGCTCACGTGCTAACATTGTCATCAAAGGAACCAAGAAAGATCAAGTTGATCAAATTATTAAGTATATTAGGTAAAACAGGGTTGTTTTATTATATCACAAACTATATAACCTTTTGGTTGCTAATTATAGTGTTGTTTTAGGGTATATTAGGGAGTTTAAGGAGAACAACAAAGTCGACAAGGTGGTGGTCCTGTGGACTGCCAACACCAAAAGATACAGCAGTGTGGTTGTTGGCTTTAATGATACCATGGAAAACCTCTTTGCTTCTGTGGATAGAAATGAGGCCGAAATATCTCCTTCCACCTTGTATGCTATTGCTGGTATTCTTGAAAATGTACCCTTCATCAAT</genome_strand>
        <mrna_strand>GTCTTTCAATGGAGAGGAGATCTATGCTCCCTTTAAGAGCATACTTCCCATG..........................................................................................................................................................................................................................................................................................................................................................................................................................G----TCAATCCAGATGATGTAGTTTTTGGAGGATGGGACATCAGCAACATGAATTTGGCAGATGCCATGGCAAGAGCTAAAGTTTTTGACATTGACCTTCAAATGCAACTGAGGCCGTACATGGAATCCATGGTCCCACTGCCTG..................................................GTATCTATGACCCTGATTTCATTGCTGCAAACCAAGGCTCACGTGCTAACAATGTCATCAAAGGAACCAAGAAAGAACAAATTGATCAAATTATTAA................................................................................GG-ATATTAGGGAGTTTAAGGAGAACAACAAAGTGGACAGGGTGGTGGTCCTGTGGACTGCCAACACTGAAAGATACAGCAGTGTGGCTGTTGGCTTTAATGATACCATGGAAAACCTTTTTGCTTCTGTGGATAGAAATGAGGCTGAAATATCTCCTTCCACCTTGTATGCTATTGCTTGTATTCTTGAAAATGTACCCTTCATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389903" ref_strand="+" ref_description="SGN-E389903 [TUS-4-L4]">
      <seq>tccatctgttcctggaaactcttgctcccattggaccatttgtatctatatgcatcaggatcccgcattcatggatctctcggttcgagaaatcaaaataagaggctcgaaccatttcttctgactctttttcaaattcgataaatattggttgatcgtatatttcattatagttctatgattcagagtatcctttcctatttgatccctttgaattccatattcgaagttgcgatcggatctattcattaaaaagaatcgattcaatacatttcttatgtacccataggtactatattggatttgaatcagatttcggatcaatctatattgagtgactgcctccattatgttgttgctagcaaataccactatttttggttttggatcttccaaatcattcccgcaggagatcctgacccatttttttctgatccttcgagaaaaagattcattctcttcataaaaaataggaggtagaaccaataaagatttctttttcgattcatccctggcctcattcaagaattgtttttgatccaatccgcaggaatcaatagaaaaggcaaatcccttatgatacaccagatccggctcggttattgatagagtgaatagatctgccatttcttgaaatctctcttctgatgcaaaatcgtagtgtaacgtgtatcctcccctgttccggtcatggaatagatgaaataaatcaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="40442" stop="39171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40142" g_stop="39483" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E389903" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40142" e_stop="39483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAATGTTCCTGGAAACCCTTACTCCCATTGGACCATTTGTATCTATATGCATCAGGATCCCG-ATTCATAGATCTCTCGGTTCGAGAAATCAAAATGAGAGGCTCAAACCATTTCTTGTGACTCTTTTTCAAATTCGATAAATATTGGTTGATCTTATATTTCATTATAGTTCTATGATTCAGAGTATCCTTTCCTATTTGATCCCTTTGAATTCCATATTCGAAGTTGCG-T-GGATCTATTCATTAAAAAGAATCGATTCCATACATTTCTTATGTACCCATAGGTACTATATTGGATTTGAATCAGATTTCGGATCAATCTATATTGAGTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCACTATTTTTGGCTTTGGATCTTCCAAATCATTCCCGCTGGAGATCCTGACCCATTTTTTTTATGATCCTTCCAGAAAAAGATTCATTCTCTTCACAAAAAATAGGAGGTAGAACCAATAAAGATTTCTTTTTCGATTCATCCCTGGCCTCATTCAAGAATTGTTTTTGATCCAATCCGCAGGAATCAATAGAAAAGGCAAATCCCTTATGATACACCAGATCCGGCTCGGTTATTCATAGAGTGAATAAATCTGCCATTTCTTGAAATCTCTCTTCTGATGCAAAATCGTAGT</genome_strand>
        <mrna_strand>TCCATCTGTTCCTGGAAACTCTTGCTCCCATTGGACCATTTGTATCTATATGCATCAGGATCCCGCATTCATGGATCTCTCGGTTCGAGAAATCAAAATAAGAGGCTCGAACCATTTCTTCTGACTCTTTTTCAAATTCGATAAATATTGGTTGATCGTATATTTCATTATAGTTCTATGATTCAGAGTATCCTTTCCTATTTGATCCCTTTGAATTCCATATTCGAAGTTGCGATCGGATCTATTCATTAAAAAGAATCGATTCAATACATTTCTTATGTACCCATAGGTACTATATTGGATTTGAATCAGATTTCGGATCAATCTATATTGAGTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCACTATTTTTGGTTTTGGATCTTCCAAATCATTCCCGCAGGAGATCCTGACCCA-TTTTTTTCTGATCCTTCGAGAAAAAGATTCATTCTCTTCATAAAAAATAGGAGGTAGAACCAATAAAGATTTCTTTTTCGATTCATCCCTGGCCTCATTCAAGAATTGTTTTTGATCCAATCCGCAGGAATCAATAGAAAAGGCAAATCCCTTATGATACACCAGATCCGGCTCGGTTATTGATAGAGTGAATAGATCTGCCATTTCTTGAAATCTCTCTTCTGATGCAAAATCGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550053" ref_strand="+" ref_description="SGN-E550053 [TUS-5-L4]">
      <seq>tcccatgttcctggaaactcttgctcccattggaccatttgtatctatatgcatcaggatcccgattcatggatctctcggttcgagaaatcaaaataagaggctcgaaccatttcttctgactctttttcaaattcgataaatattggttgatcgtatatttcattatagttctatgattcagagtatcctttcctatttgatccctttgaattccatattcgaagttgcgatcggatctattcattaaaaagaatcgattcaatacatttcttatgtacccataggtactatattggatttgaatcagatttcggatcaatctatattgagtgactgcctccattatgttgttgctagcaaataccactatttttggttttggatcttccaaatcattcccgcaggagatcctgacccatttttttctgatccttcgagaaaaagattcattctcttcataaaaaataggaggtagaaccaataaagatttctttttcgattcatccctggcctcattcaagaattgtttttgatccaatccgcaggaatcaatagaaaaggcaaatcccttatgatacaccagatccggctcggttattgatagagtgaatagatctgccatttcttgaaatctctcttctgatgcaaaatcgtagtgtaacgtgtatcctcccctgttccggtcatggaatagatgaaataatcaaaaatggatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="40437" stop="39171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40142" g_stop="39483" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E550053" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40142" e_stop="39483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAATGTTCCTGGAAACCCTTACTCCCATTGGACCATTTGTATCTATATGCATCAGGATCCCGATTCATAGATCTCTCGGTTCGAGAAATCAAAATGAGAGGCTCAAACCATTTCTTGTGACTCTTTTTCAAATTCGATAAATATTGGTTGATCTTATATTTCATTATAGTTCTATGATTCAGAGTATCCTTTCCTATTTGATCCCTTTGAATTCCATATTCGAAGTTGCG-T-GGATCTATTCATTAAAAAGAATCGATTCCATACATTTCTTATGTACCCATAGGTACTATATTGGATTTGAATCAGATTTCGGATCAATCTATATTGAGTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCACTATTTTTGGCTTTGGATCTTCCAAATCATTCCCGCTGGAGATCCTGACCCATTTTTTTTATGATCCTTCCAGAAAAAGATTCATTCTCTTCACAAAAAATAGGAGGTAGAACCAATAAAGATTTCTTTTTCGATTCATCCCTGGCCTCATTCAAGAATTGTTTTTGATCCAATCCGCAGGAATCAATAGAAAAGGCAAATCCCTTATGATACACCAGATCCGGCTCGGTTATTCATAGAGTGAATAAATCTGCCATTTCTTGAAATCTCTCTTCTGATGCAAAATCGTAGT</genome_strand>
        <mrna_strand>TCC-CATGTTCCTGGAAACTCTTGCTCCCATTGGACCATTTGTATCTATATGCATCAGGATCCCGATTCATGGATCTCTCGGTTCGAGAAATCAAAATAAGAGGCTCGAACCATTTCTTCTGACTCTTTTTCAAATTCGATAAATATTGGTTGATCGTATATTTCATTATAGTTCTATGATTCAGAGTATCCTTTCCTATTTGATCCCTTTGAATTCCATATTCGAAGTTGCGATCGGATCTATTCATTAAAAAGAATCGATTCAATACATTTCTTATGTACCCATAGGTACTATATTGGATTTGAATCAGATTTCGGATCAATCTATATTGAGTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCACTATTTTTGGTTTTGGATCTTCCAAATCATTCCCGCAGGAGATCCTGACCCA-TTTTTTTCTGATCCTTCGAGAAAAAGATTCATTCTCTTCATAAAAAATAGGAGGTAGAACCAATAAAGATTTCTTTTTCGATTCATCCCTGGCCTCATTCAAGAATTGTTTTTGATCCAATCCGCAGGAATCAATAGAAAAGGCAAATCCCTTATGATACACCAGATCCGGCTCGGTTATTGATAGAGTGAATAGATCTGCCATTTCTTGAAATCTCTCTTCTGATGCAAAATCGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214349" ref_strand="+" ref_description="SGN-E214349 [cLEC-77-G19]">
      <seq>taacctcagaccaatcaatcgaatattgattaatacgtaatcgatcgaacactacttgaaaacggctcttctgcttcgaaacggactgttccaaatgttcctggaaactcttgctcccattggaccatttgtatctatatgcatcaggatcccgattcatggatctctcggttcgagaaatcaaaataagaggctcgaaccatttcttctgactctttttcaaattcgataaatattggttgatcgtatatttcattatagttctatgattcagagtatcctttcctatttgatccctttgaattccatattcgaagttgcgatcggatctattcattaaaaagaatcgattcaatacatttcttatgtacccataggtactatattggatttgaatcagatttcggatcaatctatattgagtgactgcctccattatgttgttgctagcaaataccactatttttggttttggatcttccaaatcattcccgcaggagatcctgacccatttttttctgatccttcgagaaaaagattcattctcttcataaaaaataggaggtagaaccaataaagatttctttttcgattcatccctggcctcattcaagaattgtttttgatccaatccgcaggaatcaatagaaaaggcaaatcccttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="40531" stop="39266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40231" g_stop="39566" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E214349" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40231" e_stop="39566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCTCAGACCAATCAATCAAATATTGATTAATACGTAATCGATCGAACAATACTTGAAAACGACTCTTCTTCTTCGAAACGGACTGTTCCAAATGTTCCTGGAAACCCTTACTCCCATTGGACCATTTGTATCTATATGCATCAGGATCCCGATTCATAGATCTCTCGGTTCGAGAAATCAAAATGAGAGGCTCAAACCATTTCTTGTGACTCTTTTTCAAATTCGATAAATATTGGTTGATCTTATATTTCATTATAGTTCTATGATTCAGAGTATCCTTTCCTATTTGATCCCTTTGAATTCCATATTCGAAGTTGCG-T-GGATCTATTCATTAAAAAGAATCGATTCCATACATTTCTTATGTACCCATAGGTACTATATTGGATTTGAATCAGATTTCGGATCAATCTATATTGAGTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCACTATTTTTGGCTTTGGATCTTCCAAATCATTCCCGCTGGAGATCCTGACCCATTTTTTTTATGATCCTTCCAGAAAAAGATTCATTCTCTTCACAAAAAATAGGAGGTAGAACCAATAAAGATTTCTTTTTCGATTCATCCCTGGCCTCATTCAAGAATTGTTTTTGATCCAATCCGCAGGAATCAATAGAAAAGGCAAATCCCTTATG</genome_strand>
        <mrna_strand>TAACCTCAGACCAATCAATCGAATATTGATTAATACGTAATCGATCGAACACTACTTGAAAACGGCTCTTCTGCTTCGAAACGGACTGTTCCAAATGTTCCTGGAAACTCTTGCTCCCATTGGACCATTTGTATCTATATGCATCAGGATCCCGATTCATGGATCTCTCGGTTCGAGAAATCAAAATAAGAGGCTCGAACCATTTCTTCTGACTCTTTTTCAAATTCGATAAATATTGGTTGATCGTATATTTCATTATAGTTCTATGATTCAGAGTATCCTTTCCTATTTGATCCCTTTGAATTCCATATTCGAAGTTGCGATCGGATCTATTCATTAAAAAGAATCGATTCAATACATTTCTTATGTACCCATAGGTACTATATTGGATTTGAATCAGATTTCGGATCAATCTATATTGAGTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCACTATTTTTGGTTTTGGATCTTCCAAATCATTCCCGCAGGAGATCCTGACCCA-TTTTTTTCTGATCCTTCGAGAAAAAGATTCATTCTCTTCATAAAAAATAGGAGGTAGAACCAATAAAGATTTCTTTTTCGATTCATCCCTGGCCTCATTCAAGAATTGTTTTTGATCCAATCCGCAGGAATCAATAGAAAAGGCAAATCCCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233596" ref_strand="+" ref_description="SGN-E233596 [cLED-14-C3]">
      <seq>ccaaatgttcctggaaactcttgctcccattggaccatttgtatctatatgcatcaggatcccgattcatggatctctcggttcgagaaatcaaaataagaggctcgaaccatttcttctgactctttttcaaattcgataaatattggttgatcgtatatttcattatagttctatgattcagagtatcctttcctatttgatccctttgaattccatattcgaagttgcgatcggatctattcattaaaaagaatcgattcaatacatttcttatgtacccataggtactatattggatttgaatcagatttcggatcaatctatattgagtgactgcctccattatgttgttgctagcaaataccactatttttggttttggatcttccaaatcattcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="40441" stop="39440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40141" g_stop="39740" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E233596" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40141" e_stop="39740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATGTTCCTGGAAACCCTTACTCCCATTGGACCATTTGTATCTATATGCATCAGGATCCCGATTCATAGATCTCTCGGTTCGAGAAATCAAAATGAGAGGCTCAAACCATTTCTTGTGACTCTTTTTCAAATTCGATAAATATTGGTTGATCTTATATTTCATTATAGTTCTATGATTCAGAGTATCCTTTCCTATTTGATCCCTTTGAATTCCATATTCGAAGTTGCG-T-GGATCTATTCATTAAAAAGAATCGATTCCATACATTTCTTATGTACCCATAGGTACTATATTGGATTTGAATCAGATTTCGGATCAATCTATATTGAGTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCACTATTTTTGGCTTTGGATCTTCCAAATCATTCCCG</genome_strand>
        <mrna_strand>CCAAATGTTCCTGGAAACTCTTGCTCCCATTGGACCATTTGTATCTATATGCATCAGGATCCCGATTCATGGATCTCTCGGTTCGAGAAATCAAAATAAGAGGCTCGAACCATTTCTTCTGACTCTTTTTCAAATTCGATAAATATTGGTTGATCGTATATTTCATTATAGTTCTATGATTCAGAGTATCCTTTCCTATTTGATCCCTTTGAATTCCATATTCGAAGTTGCGATCGGATCTATTCATTAAAAAGAATCGATTCAATACATTTCTTATGTACCCATAGGTACTATATTGGATTTGAATCAGATTTCGGATCAATCTATATTGAGTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCACTATTTTTGGTTTTGGATCTTCCAAATCATTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235531" ref_strand="+" ref_description="SGN-E235531 [cLED-11-J19]">
      <seq>aagtgatgtggattattcaagaatcgaagtcgatttgctttataaaaagaagatatcaatgaacttctatgaaatggtttcacgggattcagccaattgtcttgatcgtggaatatcattgagaaataggaatccgggttatcaaaggatttcctgcgattatttctagtatggaatgagtcaatcatccactttggtatcttattgaacaaaaatggtgatattgttcctccattgatcaagaatttcgatttttgggaagtatcatgatcgtccaataagaagggtttcaattttttcaaatgaacaatttgaagacctattgattctaacaactgattgcagagttgatcattcggacctttcaattcttcatagatgtagatctcggacctatgaatggggatatttccgaaactcacacagaaaaaaggaagtgagttagacaaaaataaaagcaacttggacaaaaaaagaagtgacttggacaaaaagaaacgaagtgacttagacaaatcttttttgtcgataacctcagaccaatcaatcgaatattgattaatacgtaatcgatcgaacactacttgaaaacggctcttctgcttcgaaacggactgttccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="41060" stop="39836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40760" g_stop="40136" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E235531" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40760" e_stop="40136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGATGTGGATTATTCAAGAATCAAAGTCGATTTGCTTTATAAAAAGAAGATATCAATGATCTTCTATGAAATGGTTTCACGGGATTCAACCAATTGTCTTGATCGTGGAATATCATTGAGAAATAGGAATCCGGGTTATCAAAGGATTTCCTACCATTATTTCTAGTACGGAATGAGTCAATCATCCACTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCATTGATCAAGAATTTCAATTTTTGGGAAGTATCATGATCGTCCAATAAGAAGGGTTTCAATTATTTCAAATGAACATATTTGAAGACCTATTGATTCTAACAACTGATTGCAGAGTTGATCATTCGGACCTTTCAATTCTTCATAGATGTCGATCTCGGACCTATGAATGGGGATATTTCAGAAACTCACACAGAAAAAAGGAAGTGAGTTAGAC-AAAA-AAAAGCAACTTGGACAAAAAAAGAAGTGACTTGGACAAAAAGAAACGAAGTGACTTAGACAAATCTTTTTTTGTCGATAACCTCAGACCAATCAATCAAATATTGATTAATACGTAATCGATCGAACAATACTTGAAAACGACTCTTCTTCTTCGAAACGGACTGTTCCAAAT</genome_strand>
        <mrna_strand>AAGTGATGTGGATTATTCAAGAATCGAAGTCGATTTGCTTTATAAAAAGAAGATATCAATGAACTTCTATGAAATGGTTTCACGGGATTCAGCCAATTGTCTTGATCGTGGAATATCATTGAGAAATAGGAATCCGGGTTATCAAAGGATTTCCTGCGATTATTTCTAGTATGGAATGAGTCAATCATCCACTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCATTGATCAAGAATTTCGATTTTTGGGAAGTATCATGATCGTCCAATAAGAAGGGTTTCAATTTTTTCAAATGAACA-ATTTGAAGACCTATTGATTCTAACAACTGATTGCAGAGTTGATCATTCGGACCTTTCAATTCTTCATAGATGTAGATCTCGGACCTATGAATGGGGATATTTCCGAAACTCACACAGAAAAAAGGAAGTGAGTTAGACAAAAATAAAAGCAACTTGGACAAAAAAAGAAGTGACTTGGACAAAAAGAAACGAAGTGACTTAGACAAATC-TTTTTTGTCGATAACCTCAGACCAATCAATCGAATATTGATTAATACGTAATCGATCGAACACTACTTGAAAACGGCTCTTCTGCTTCGAAACGGACTGTTCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392241" ref_strand="+" ref_description="SGN-E392241 [TUS-36-I14]">
      <seq>gaagtgatgtggattattcaagaatcgaagtcgatttgctttataaaaagaagatatcaatgaacttctatgaaatggtttcacgggattcagccaattgtcttgatcgtggaatatcattgagaaataggaatccgggttatcaaaggatttcctgcgattatttctagtatggaatgagtcaatcatccactttggtatcttattgaacaaaaatggtgatattgttcctccattgatcaagaatttcgatttttgggaagtatcatgatcgtccaataagaagggtttcaattttttcaaatgaacaatttgaagacctattgattctaacaactgattgcagagttgatcattcggacctttcaattcttcatagatgtagatctcggacctatgaatggggatatttccgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="41061" stop="40043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40761" g_stop="40343" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E392241" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40761" e_stop="40343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGATGTGGATTATTCAAGAATCAAAGTCGATTTGCTTTATAAAAAGAAGATATCAATGATCTTCTATGAAATGGTTTCACGGGATTCAACCAATTGTCTTGATCGTGGAATATCATTGAGAAATAGGAATCCGGGTTATCAAAGGATTTCCTACCATTATTTCTAGTACGGAATGAGTCAATCATCCACTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCATTGATCAAGAATTTCAATTTTTGGGAAGTATCATGATCGTCCAATAAGAAGGGTTTCAATTATTTCAAATGAACATATTTGAAGACCTATTGATTCTAACAACTGATTGCAGAGTTGATCATTCGGACCTTTCAATTCTTCATAGATGTCGATCTCGGACCTATGAATGGGGATATTTCAGAAA</genome_strand>
        <mrna_strand>GAAGTGATGTGGATTATTCAAGAATCGAAGTCGATTTGCTTTATAAAAAGAAGATATCAATGAACTTCTATGAAATGGTTTCACGGGATTCAGCCAATTGTCTTGATCGTGGAATATCATTGAGAAATAGGAATCCGGGTTATCAAAGGATTTCCTGCGATTATTTCTAGTATGGAATGAGTCAATCATCCACTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCATTGATCAAGAATTTCGATTTTTGGGAAGTATCATGATCGTCCAATAAGAAGGGTTTCAATTTTTTCAAATGAACA-ATTTGAAGACCTATTGATTCTAACAACTGATTGCAGAGTTGATCATTCGGACCTTTCAATTCTTCATAGATGTAGATCTCGGACCTATGAATGGGGATATTTCCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228065" ref_strand="+" ref_description="SGN-E228065 [cLED-2-O6]">
      <seq>aagtgatgtggattattcaagaatcgaagtcgatttgctttataaaaagaagatatcaatgaacttctatgaaatggtttcacgggattcagccaattgtcttgatcgtggaatatcattgagaaataggaatccgggttatcaaaggatttcctgcgattatttctagtatggaatgagtcaatcatccactttggtatcttattgaacaaaaatggtgatattgttcctccattgatcaagaatttcgatttttgggaagtatcatgatcgtccaataagaagggtttcaattttttcaaatgaacaatttgaagacctattgattctaacaactgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="41060" stop="40119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40760" g_stop="40419" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E228065" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40760" e_stop="40419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGATGTGGATTATTCAAGAATCAAAGTCGATTTGCTTTATAAAAAGAAGATATCAATGATCTTCTATGAAATGGTTTCACGGGATTCAACCAATTGTCTTGATCGTGGAATATCATTGAGAAATAGGAATCCGGGTTATCAAAGGATTTCCTACCATTATTTCTAGTACGGAATGAGTCAATCATCCACTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCATTGATCAAGAATTTCAATTTTTGGGAAGTATCATGATCGTCCAATAAGAAGGGTTTCAATTATTTCAAATGAACATATTTGAAGACCTATTGATTCTAACAACTGATT</genome_strand>
        <mrna_strand>AAGTGATGTGGATTATTCAAGAATCGAAGTCGATTTGCTTTATAAAAAGAAGATATCAATGAACTTCTATGAAATGGTTTCACGGGATTCAGCCAATTGTCTTGATCGTGGAATATCATTGAGAAATAGGAATCCGGGTTATCAAAGGATTTCCTGCGATTATTTCTAGTATGGAATGAGTCAATCATCCACTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCATTGATCAAGAATTTCGATTTTTGGGAAGTATCATGATCGTCCAATAAGAAGGGTTTCAATTTTTTCAAATGAACA-ATTTGAAGACCTATTGATTCTAACAACTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537998" ref_strand="+" ref_description="SGN-E537998 [TUS-56-O7](-)">
      <seq>gtcgttaaggtggagaactgaaccaagaattctctttcttcatcatcaatcgaatcactgttcgcgacccaggattctattttctcgtcaatccaatccccgttcacgttttttctttttcttatcaatgaatagatctctttacttgtatgacttagatgtctcgtatttctcgaaaaagtgattcgattgatgggatttggtatgagatcgatgatctcgatgagattgatattccaatctttcttcttagaacgtattgatttgaccccataagcgggaccaagcatgttgccgccagaagcagaaccccgtatttcttctagagaatctcctaattgttccagagcaactagaaagagattctttaaccagaaagaattcggttcagatgtaggatacctatccagaagttttcgcaactcaatcatagatgatggagtcatcaaagattttaccctttcgaactctgtctgtaactcactagaggcccgggaaacaaagagaagatgtgtacgaacgagatatccagcaacaagaagaaggaaaaggattgaatagaggaactcccgagcatttggcgatctcagatgtgtcgatatcaatggtgactcattatttcgatgaatcattcttcggacagaagaagattattaaacattactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="42542" stop="41272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42242" g_stop="41572" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E537998" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42242" e_stop="41572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTTAAGGTGGAGAACTGAACCAAGAATTCTCTTTCCTCATCATCAATCGAATCACTGTTCGCGACCCAAGATTCTATTTTCTCATCAATCCAATCCCTATTCACATTTTTTCTTTTTCTTATCAATG-ATAGATCTTTTTACTTGTATGACTTAGATGTCTCGTATTTCTCAAAAAAGTGATTCGATTTATGGGATTCGGTATGAGATCGATGATCTCGATGAGATTAATATTTCAATGTTTCTTCTTAGAACGTATTGATTTGACCCCATAAGCGGGACCAAGCATGTTGCCGCCAGAAGCAGAACCCCGTATTTATTCTAGAGAATTTCCTAATTGTTCCAGAGCAGCTAGAAAGAGATTCTTTAACCAAAAAAAATTCGGTTCAGTTGTAGGATACCTATCTAGAAGTTTTCGCAACTCAATCATAGATGAAGGAGTCATCAAACATTTTACCCTTTCGAACTCTGTCTGTAACTCACTAGAGGCCCGGGAAACAAAGAGAAGACGTGTACGAACAAGATATCTAGCAACAAGGAGAAGGAAAAGGATTGAATAGAGGAACTCCCGAGCATTTGGCGATCTCAGATGTGTCGATATCAATGGTGACTCATTATTTCGATGAATCATTTCTTCGAACAGAAGAAGATTATGTAAACACTTACTCAAG</genome_strand>
        <mrna_strand>GTCGTTAAGGTGGAGAACTGAACCAAGAATTCTCTTTCTTCATCATCAATCGAATCACTGTTCGCGACCCAGGATTCTATTTTCTCGTCAATCCAATCCCCGTTCACGTTTTTTCTTTTTCTTATCAATGAATAGATCTCTTTACTTGTATGACTTAGATGTCTCGTATTTCTCGAAAAAGTGATTCGATTGATGGGATTTGGTATGAGATCGATGATCTCGATGAGATTGATATTCCAATCTTTCTTCTTAGAACGTATTGATTTGACCCCATAAGCGGGACCAAGCATGTTGCCGCCAGAAGCAGAACCCCGTATTTCTTCTAGAGAATCTCCTAATTGTTCCAGAGCAACTAGAAAGAGATTCTTTAACCAGAAAGAATTCGGTTCAGATGTAGGATACCTATCCAGAAGTTTTCGCAACTCAATCATAGATGATGGAGTCATCAAAGATTTTACCCTTTCGAACTCTGTCTGTAACTCACTAGAGGCCCGGGAAACAAAGAGAAGATGTGTACGAACGAGATATCCAGCAACAAGAAGAAGGAAAAGGATTGAATAGAGGAACTCCCGAGCATTTGGCGATCTCAGATGTGTCGATATCAATGGTGACTCATTATTTCGATGAATCA-TTCTTCGGACAGAAGAAGATTAT-TAAACA-TTACTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378122" ref_strand="+" ref_description="SGN-E378122 [TUS-21-J22](-)">
      <seq>ctattttctgtcgttaaggtggagaactgaaccaagaattctctttcttcatcatcaatcgaatcactgttcgcgacccaggattctattttctcatcaatccaatccccgttcacgttttttctttttcttatcaatgaatagatctctttacttgtatgacttagatgtctcgtatttctcgaaaaagtgattcgattgatgggatttggtatgagatcgatgatctcgatgagattgatattccaatctttcttcttagaacgtattgatttgaccccataagcgggaccaagcatgttgccgccagaagcagaaccccgtatttcttctagagaatctcctaattgttccagagcaactagaaagagattctttaaccagaaagaattcggttcagatgtaggatacctatccagaagttttcgcaactcaatcatagatgatggagtcatcaaagattttaccctttcgaactctgtctgtaactcactagaggcccgggaaacaaagagaagatgtgtacgaacgagatatccagcaacaagaagaaggaaaaggattgaatagaggaactcccgagcatttggcgatctcagatgtgtcgatatcaatggtgactcattatttcgatgaatcatttcttcggacagaagaagattatgtaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="42551" stop="41280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42251" g_stop="41580" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E378122" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42251" e_stop="41580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTTCTGTCGTTAAGGTGGAGAACTGAACCAAGAATTCTCTTTCCTCATCATCAATCGAATCACTGTTCGCGACCCAAGATTCTATTTTCTCATCAATCCAATCCCTATTCACATTTTTTCTTTTTCTTATCAATG-ATAGATCTTTTTACTTGTATGACTTAGATGTCTCGTATTTCTCAAAAAAGTGATTCGATTTATGGGATTCGGTATGAGATCGATGATCTCGATGAGATTAATATTTCAATGTTTCTTCTTAGAACGTATTGATTTGACCCCATAAGCGGGACCAAGCATGTTGCCGCCAGAAGCAGAACCCCGTATTTATTCTAGAGAATTTCCTAATTGTTCCAGAGCAGCTAGAAAGAGATTCTTTAACCAAAAAAAATTCGGTTCAGTTGTAGGATACCTATCTAGAAGTTTTCGCAACTCAATCATAGATGAAGGAGTCATCAAACATTTTACCCTTTCGAACTCTGTCTGTAACTCACTAGAGGCCCGGGAAACAAAGAGAAGACGTGTACGAACAAGATATCTAGCAACAAGGAGAAGGAAAAGGATTGAATAGAGGAACTCCCGAGCATTTGGCGATCTCAGATGTGTCGATATCAATGGTGACTCATTATTTCGATGAATCATTTCTTCGAACAGAAGAAGATTATGTAAACACT</genome_strand>
        <mrna_strand>CTATTTTCTGTCGTTAAGGTGGAGAACTGAACCAAGAATTCTCTTTCTTCATCATCAATCGAATCACTGTTCGCGACCCAGGATTCTATTTTCTCATCAATCCAATCCCCGTTCACGTTTTTTCTTTTTCTTATCAATGAATAGATCTCTTTACTTGTATGACTTAGATGTCTCGTATTTCTCGAAAAAGTGATTCGATTGATGGGATTTGGTATGAGATCGATGATCTCGATGAGATTGATATTCCAATCTTTCTTCTTAGAACGTATTGATTTGACCCCATAAGCGGGACCAAGCATGTTGCCGCCAGAAGCAGAACCCCGTATTTCTTCTAGAGAATCTCCTAATTGTTCCAGAGCAACTAGAAAGAGATTCTTTAACCAGAAAGAATTCGGTTCAGATGTAGGATACCTATCCAGAAGTTTTCGCAACTCAATCATAGATGATGGAGTCATCAAAGATTTTACCCTTTCGAACTCTGTCTGTAACTCACTAGAGGCCCGGGAAACAAAGAGAAGATGTGTACGAACGAGATATCCAGCAACAAGAAGAAGGAAAAGGATTGAATAGAGGAACTCCCGAGCATTTGGCGATCTCAGATGTGTCGATATCAATGGTGACTCATTATTTCGATGAATCATTTCTTCGGACAGAAGAAGATTATGTAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="+" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="53701" stop="54717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54001" g_stop="54414" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="+" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54001" e_stop="54414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTGGAAAATCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAAC-AAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCATGACAGCAAAACTGAAGCTGCAGGCCACCAAATCCAACTCTATCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGCGAATCACAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTC-TTTTTCTCTCTTTTGGCTGCTGAAAAACTCTCT</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTCTTTTAGCTGCTGAAAAACTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="+" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="58419" stop="59435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58719" g_stop="59141" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="+" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58719" e_stop="59141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAAATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAAC-AAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTAACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCGACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCGGCTCAATCGGACAAGAAACGAAGCAGGAATCGCAATTTGAATTTTGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTC-TTTTTCTCTCTTTTGGCTGCTGAAAAACTCTCTCTGTGTATC</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTCTTTTAGCTGCTGAAAAACTCTCTCTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="+" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="91655" stop="92432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91955" g_stop="92131" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91955" e_stop="92131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACATTGCCTCAAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCTGCCAAGGGTAAGAAGTTATCCCAATGACCACCAAATTCTATCACACATGCACGAAGCATATCCTCCAATACCTGAATCGTTCGCTCAGACTAACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="96291" stop="95036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95991" g_stop="95336" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95991" e_stop="95336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAACCAGGTTCTTTCTTATCTTAGCGGATTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTACACCAGCACCTCAGGTTCCGAGAGTACAACATGCAACTGCTATGGCTTCCCGCGTGGATGCCTCATTGGAAATGGGCACGTTTGTTCAATTGACTACAGGGATTATAATGACGAGTGATCAGCATGAACTTTTCACTAAGTTCTTGAAGTTGAAACCTCCAGTATTCAAGGGTGGTGAATCTGAGGACGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTAAATAAGATGGACATAGTGGAACGATTCGGTGTTGAGTTTGTGACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCAGTCGTATGTTGACTGTCAACCGGCACAGGAACCAACTATGAGTTGGGCATCATTCTCTAGCCTATTTATGGAAAAGTATATACCCCGGACTTTGAGAGATAGGAGGAGAGATGAGTTCTTTAGCCTAGAGCAAGGCAGGATGTCGGTTACTACTTATGAGGCTAAGTTTCATGCATTATCCAGGTATGCCACCCAGCTTTGCTTCAGTTCACAAGAGCGGATTCACCGTTTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGTCTTACAGGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369759" ref_strand="+" ref_description="SGN-E369759 [TUS-25-O3](-)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="101285" stop="99977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100985" g_stop="100268" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E369759" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100985" e_stop="100268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGAGAATCGAACAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATCTCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAACCATTTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACAACTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATCAAGCAAACTTGGCTGAATCCAAAGGAGATATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTAGTGCCTCATGTCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAAGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAATGATGGCCTTTTCAAACTAAATGTAATTGTAGTTGATATGAATAAACATTTTGCTTCTTCTTACTTGCTTGA</genome_strand>
        <mrna_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395006" ref_strand="-" ref_description="SGN-E395006 [TUS-34-O4]">
      <seq>aagaaattcaatggaaactgctttaattgtggtaaacatggtcataggggtaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttctttttaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="101136" stop="99977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100836" g_stop="100277" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="581"/>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E395006" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395006" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="100836" e_stop="100277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATTCAATGGAAACAACTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATCAAGCAAACTTGGCTGAATCCAAAGGAGATATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTAGTGCCTCATGTCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAAGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAATGATGGCCTTTTCAAACTAAATGTAATTGTAGTTGATATGAATAAACATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>AAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGGTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250407" ref_strand="-" ref_description="SGN-E250407 [cLEG-6-H3]">
      <seq>aattgtggtaaacatggtcatagggctaatgaaagccggggtcttaagaaggacaagataaagaaggatcaagcaaacttgggtgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcagttacagatgagaaattatttatggccaactccgctgttgcaaaggtgtaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttcatatgaataaagattttgcttcttattaaaaaaaaaaaaaaaaaaagactcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="101112" stop="99977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100812" g_stop="100277" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="556"/>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E250407" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250407" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="100812" e_stop="100277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTGGTAAACATGGTCATAGGGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATCAAGCAAACTTGGCTGAATCCAAAGGAGATATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTAGTGCCTCATGTCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAAGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAATGATGGCCTTTTCAAACTAAATGTAATTGTAGTTGATATGAATAAACATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>AATTGTGGTAAACATGGTCATAGGGCTAATGAAAGCCGGGGTCTTAAGAAGGACAAGATAAAGAAGGATCAAGCAAACTTGGGTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCAGTTACAGATGAGAAATTATTTATGGCCAACTCCGCTGTTGCAAAGGTGTAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTCATATGAATAAAGATTTTGCTTCTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375520" ref_strand="+" ref_description="SGN-E375520 [TUS-34-B10](-)">
      <seq>atgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattttggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactttagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtttcatatgttccagaattgagaaataatttagtttcaattccaattttgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttttttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="101080" stop="99977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100780" g_stop="100277" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="505" polyA_stop="524"/>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E375520" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100780" e_stop="100277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATCAAGCAAACTTGGCTGAATCCAAAGGAGATATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTAGTGCCTCATGTCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAAGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAATGATGGCCTTTTCAAACTAAATGTAATTGTAGTTGATATGAATAAACATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>ATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTTTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTTTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTTTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251204" ref_strand="+" ref_description="SGN-E251204 [cLEG-10-L14]">
      <seq>tcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="101976" stop="100697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101676" g_stop="101181" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101180" i_stop="101109" i_length="72">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101108" g_stop="100997" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="608" r_length="112" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E251204" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101676" e_stop="101181"/>
          <exon e_start="101108" e_stop="100997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACCGGCTAAGAAACCTGCAAAAATTTCTGGAGTCAACATTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTTAGATCAATCTCCTGCTGATGAATGATTCTTGGTAACAGAAGCATGGACGCACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACGGCACTGCTAAAACCTCAAAAGAACTCTGGGGTGCTTTAGAAAAGAAGTACAAAACAGAAGATGCGGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTATATGATGATAGACAGTAAGACTGTTATCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATGTTAAGTTTTTCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATGATGCTTTTCTAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAATGCAAAGAGTTCACTGTTGA</genome_strand>
        <mrna_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261540" ref_strand="+" ref_description="SGN-E261540 [cLEG-57-K8]">
      <seq>taaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctcctattgtggaaggactttaaaaactacttgaaacacaaacgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="102156" stop="100712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101856" g_stop="101181" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101180" i_stop="101109" i_length="72">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101108" g_stop="101012" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="772" r_length="98" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E261540" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101856" e_stop="101181"/>
          <exon e_start="101108" e_stop="101012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCTTTATGGTTTTCTACTCTGCTTGAATTATTAAAATTTATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGGTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACCGGCTAAGAAACCTGCAAAAATTTCTGGAGTCAACATTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTTAGATCAATCTCCTGCTGATGAATGATTCTTGGTAACAGAAGCATGGACGCACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACGGCACTGCTAAAACCTCAAAAGAACTCTGGGGTGCTTTAGAAAAGAAGTACAAAACAGAAGATGCGGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTATATGATGATAGACAGTAAGACTGTTATCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATGTTAAGTTTTTCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATGATGCTTTTCTAGTGGCTGCAATTATTGAAAAGTTACCTCC-ATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAATGCAA</genome_strand>
        <mrna_strand>TAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262550" ref_strand="+" ref_description="SGN-E262550 [cLEG-63-C22]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctgggacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaactgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaattatattttgagtggtctgcaagatgatctgtancatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaacagaagatgccggaaatgagaaaatcattgtgggcaaatttctagacttttagatgatagacagtaagactgtcgtcacccaagtttcagaattgcaggttataatccatgatctccttgctgaaaggatgattgtgaatgatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="102190" stop="100860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101890" g_stop="101181" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101180" i_stop="101109" i_length="72">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101108" g_stop="101087" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="727" r_length="22" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E262550" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101890" e_stop="101181"/>
          <exon e_start="101108" e_stop="101087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACAGTTTTTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTATTAAAATTTATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGGTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACCGGCTAAGAAACCTGCAAAAATTTCTGGAGTCAACATTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTTAGATCAATCTCCTGCTGATGAATGATTCTTGGTAACAGAAGCATGGACGCACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACGGCACTGCTAAAACCTCAAAAGAACTCTGGGGTGCTTTAGAAAAGAAGTACAAAACAGAAGATGCGGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTATATGATGATAGACAGTAAGACTGTTATCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATGTTAAGTTTTTCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATGATGCTTT</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAA-CTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGT-AAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTANCATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTAC-AAACAGAAGATGCCGGAAATGAGAAAATCATTGTGGGCAAATTTCTAGACTTTTAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTTCAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAA........................................................................GGATGATTGTGAATGATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253427" ref_strand="+" ref_description="SGN-E253427 [cLEG-24-L5]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctggttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="102285" stop="101092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101975" g_stop="101392" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="611" r_length="584" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E253427" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101975" e_stop="101392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATAAAGGTTATTGTAAGAAAAACAATCTTAAG-AAATTT-CACAGTTTTTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTATTAAAATTTATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGGTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACCGGCTAAGAAACCTGCAAAAATTTCTGGAGTCAACATTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTTAGATCAATCTCCTGCTGATGAATGATTCTTGGTAACAGAAGCATGGACGCACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</genome_strand>
        <mrna_strand>TATTATTTTCTGCTTCATCTTATTTCTGTTTCTGGTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261066" ref_strand="+" ref_description="SGN-E261066 [cLEG-65-C11]">
      <seq>tttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcataaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagatttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="152203" stop="101114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102112" g_stop="101414" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E261066" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102112" e_stop="101414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGTACCGCTATTTCTTTAATGGGTTTAATCCGTGTTATCTTGGAAGAAATTAATCCATAACCTTCGGTACAGTGAGGGGATTAAATTCCTTAAGAACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTGTA-----T-TT-TTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATAAAGGTTATTGTAAGAAAAACAATCTTAAG-AAATTT-CACAGTTTTTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTATTAAAATTTATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGGTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACCGGCTAAGAAACCTGCAAAAATTTCTGGAGTCAACATTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTTAGATCAATCTCCTGCTGATGAATGATTCTTGGTAACAGAAGCATGGACGCACTCAGATTTTTT</genome_strand>
        <mrna_strand>TTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCATAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGATTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258047" ref_strand="+" ref_description="SGN-E258047 [cLEG-48-K15]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="102190" stop="101146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101890" g_stop="101446" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E258047" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101890" e_stop="101446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACAGTTTTTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTATTAAAATTTATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGGTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACCGGCTAAGAAACCTGCAAAAATTTCTGGAGTCAACATTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTTAGATCAATCTCCTGCTGATGAATGATTCTTG</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263584" ref_strand="+" ref_description="SGN-E263584 [cLEG-60-L13]">
      <seq>tgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="152243" stop="101153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102152" g_stop="101453" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E263584" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102152" e_stop="101453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTGTTACTGTTCTTAAGTTCGTTGAAGTTAAAGAAATTTGAAGTACCGCTATTTCTTTAATGGGTTTAATCCGTGTTATCTTGGAAGAAATTAATCCATAACCTTCGGTACAGTGAGGGGATTAAATTCCTTAAGAACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTG-----TAT-TT-TTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATAAAGGTTATTGTAAGAAAAACAATCTTAAG-AAATTT-CACAGTTTTTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTATTAAAATTTATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGGTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACCGGCTAAGAAACCTGCAAAAATTTCTGGAGTCAACATTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTTAGATCAATCTCCTGCTGATGAATG</genome_strand>
        <mrna_strand>TGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276669" ref_strand="+" ref_description="SGN-E276669 [cLEN-14-A16]">
      <seq>ttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="152202" stop="101184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102111" g_stop="101484" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E276669" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102111" e_stop="101484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGTACCGCTATTTCTTTAATGGGTTTAATCCGTGTTATCTTGGAAGAAATTAATCCATAACCTTCGGTACAGTGAGGGGATTAAATTCCTTAAGAACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTGTA-----T-TT-TTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATAAAGGTTATTGTAAGAAAAACAATCTTAAG-AAATTT-CACAGTTTTTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTATTAAAATTTATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGGTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACCGGCTAAGAAACCTGCAAAAATTTCTGGAGTCAACATTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTG</genome_strand>
        <mrna_strand>TTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="152364" stop="151390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="152064" g_stop="151691" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="152064" e_stop="151691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTATAAAAGGAAGGCAATTTTTGATTTTTCAAACACTTAAAATTTTTCTTTCTGTGCATTTA-TTTTCTCTCAAATAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTAGTTGATGTTCTTAAGTTCATTGAAGTTAATGAAATTTAAAGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACACTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTGTATT-T-T-TT-TTCTCTGCTTCATCTTATTTCTGTTTCTTTTTATTAACCTTATAAATACACGTTATTGTAAGAATAAC</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAAT-AAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0128G23-mbuTI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0128G23.1" temp_strand="-" temp_description="C04HBa0128G23.1  CU302229.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0128G23 sequenced_by:sanger upload_account_name:uk">
        <position start="152373" stop="151548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="152074" g_stop="151848" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0128G23.1" gen_strand="-" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0128G23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="152074" e_stop="151848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTTCTTGCTGAAAATGGCTATAAAAGGAAGGCAATTTTTGATTTTTCAAACACTTAAAATTTTTCTTTCTGTGCATTTATT-TTCTCTCAAATAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTAGTTGATGTTCTTAAGTTCATTGAAGTTAATGAAATTTAAAGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAAT-AAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>34</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7673" PGL_stop="6145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7673" e_stop="7606"/>
            <exon e_start="7513" e_stop="7381"/>
            <exon e_start="6970" e_stop="6825"/>
            <exon e_start="6774" e_stop="6687"/>
            <exon e_start="6606" e_stop="6370"/>
            <exon e_start="6260" e_stop="6145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.912"/>
          <exon-intron don_prob="0.913" acc_prob="0.999" e_score="0.925"/>
          <exon-intron don_prob="0.855" acc_prob="0.000" e_score="0.911"/>
          <exon-intron don_prob="0.651" acc_prob="0.990" e_score="0.761"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="0.966"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="7673" e_stop="7606" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7605" i_stop="7514" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.925">
            <gDNA_exon_boundary e_start="7513" e_stop="7381" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.913" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7380" i_stop="6971" i_length="410"/>
          </intron>
          <exon e_serial="3" e_score="0.911">
            <gDNA_exon_boundary e_start="6970" e_stop="6825" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.855" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6824" i_stop="6775" i_length="50"/>
          </intron>
          <exon e_serial="4" e_score="0.761">
            <gDNA_exon_boundary e_start="6774" e_stop="6687" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.651" acc_prob="0.990">
            <gDNA_intron_boundary i_start="6686" i_stop="6607" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="0.966">
            <gDNA_exon_boundary e_start="6606" e_stop="6370" e_length="237"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="6369" i_stop="6261" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="0.922">
            <gDNA_exon_boundary e_start="6260" e_stop="6145" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7673" stop="7606"/>
              <exon start="7513" stop="7381"/>
              <exon start="6970" stop="6825"/>
              <exon start="6774" stop="6687"/>
              <exon start="6606" stop="6370"/>
              <exon start="6260" stop="6247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7673" stop="7606"/>
              <exon start="7513" stop="7381"/>
              <exon start="6970" stop="6825"/>
              <exon start="6774" stop="6687"/>
              <exon start="6606" stop="6395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7628" stop="7606"/>
              <exon start="7513" stop="7381"/>
              <exon start="6970" stop="6825"/>
              <exon start="6774" stop="6687"/>
              <exon start="6606" stop="6370"/>
              <exon start="6260" stop="6242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7512" stop="7381"/>
              <exon start="6970" stop="6825"/>
              <exon start="6774" stop="6687"/>
              <exon start="6606" stop="6370"/>
              <exon start="6260" stop="6194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7469" stop="7381"/>
              <exon start="6970" stop="6825"/>
              <exon start="6774" stop="6687"/>
              <exon start="6606" stop="6370"/>
              <exon start="6260" stop="6145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7432" stop="7381"/>
              <exon start="6970" stop="6825"/>
              <exon start="6774" stop="6687"/>
              <exon start="6606" stop="6398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747163" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTATGCTTGTTGGACGGGTGGAAACAATGGTTCAGCCTTGACTGGAGGTGTTATTGCTAACAGAGA : AGGAATTTCATGGGCTACCAAGGATGTGCAGCAAGCCAATTACTTTGGTTCTCTTACACAGGCCTCTACTATTCGAGTTGGGTCCTTCAATGGACAGGAGATCTATACTTCCTTTAAGAGCATACTTCCCATG : GTTAATCCATCCAGATGATGTAGTGTTTGGAGAATGGGACATCAGCAACATGAATTTGGCAGATGACATGGCAAGAGCTAATGTTTTTGACGTTGATCTTCAAAAGCAACTGAGGCCCTACATGGAATCCATGGTCCCATTCCCTG : ACCCTGATTTCATTGCTGCAAACCAAGGCTCACGTGCTAACATTGTCATCAAAGGAACCAAGAAAGATCAAGTTGATCAAATTATTAA : GGTATATTAGGGAGTTTAAGGAGAACAACAAAGTCGACAAGGTGGTGGTCCTGTGGACTGCCAACACCAAAAGATACAGCAGTGTGGTTGTTGGCTTTAATGATACCATGGAAAACCTCTTTGCTTCTGTGGATAGAAATGAGGCCGAAATATCTCCTTCCACCTTGTATGCTATTGCTGGTATTCTTGAAAATGTACCCTTCATCAATGGAAGCCCACAAAATACTTTTGTCCCAG : GCCTCATTGATTTGGCCATCAAGAGGAACACTTAGATTGGTGGTGATAACTTTAAGAGTGGTCAAACCAAGATGAAGTCAGTGGTGGTTGATTTCCTTTTTGGAGCTGGAATTAAG</gDNA_template>
            <first_frame> G  Y  A  C  W  T  G  G  N  N  G  S  A  L  T  G  G  V  I  A  N  R  E :   G  I  S  W  A  T  K  D  V  Q  Q  A  N  Y  F  G  S  L  T  Q  A  S  T  I  R  V  G  S  F  N  G  Q  E  I  Y  T  S  F  K  S  I  L  P  M  :  V  N  P  S  R  *  C  S  V  W  R  M  G  H  Q  Q  H  E  F  G  R  *  H  G  K  S  *  C  F  *  R  *  S  S  K  A  T  E  A  L  H  G  I  H  G  P  I  P  * :   P  *  F  H  C  C  K  P  R  L  T  C  *  H  C  H  Q  R  N  Q  E  R  S  S  *  S  N  Y  *  :  G  I  L  G  S  L  R  R  T  T  K  S  T  R  W  W  S  C  G  L  P  T  P  K  D  T  A  V  W  L  L  A  L  M  I  P  W  K  T  S  L  L  L  W  I  E  M  R  P  K  Y  L  L  P  P  C  M  L  L  L  V  F  L  K  M  Y  P  S  S  M  E  A  H  K  I  L  L  S  Q  :  A  S  L  I  W  P  S  R  G  T  L  R  L  V  V  I  T  L  R  V  V  K  P  R  *  S  Q  W  W  L  I  S  F  L  E  L  E  L   </first_frame>
            <second_frame>  V  M  L  V  G  R  V  E  T  M  V  Q  P  *  L  E  V  L  L  L  T  E   : K  E  F  H  G  L  P  R  M  C  S  K  P  I  T  L  V  L  L  H  R  P  L  L  F  E  L  G  P  S  M  D  R  R  S  I  L  P  L  R  A  Y  F  P  W :   L  I  H  P  D  D  V  V  F  G  E  W  D  I  S  N  M  N  L  A  D  D  M  A  R  A  N  V  F  D  V  D  L  Q  K  Q  L  R  P  Y  M  E  S  M  V  P  F  P   : D  P  D  F  I  A  A  N  Q  G  S  R  A  N  I  V  I  K  G  T  K  K  D  Q  V  D  Q  I  I  K :   V  Y  *  G  V  *  G  E  Q  Q  S  R  Q  G  G  G  P  V  D  C  Q  H  Q  K  I  Q  Q  C  G  C  W  L  *  *  Y  H  G  K  P  L  C  F  C  G  *  K  *  G  R  N  I  S  F  H  L  V  C  Y  C  W  Y  S  *  K  C  T  L  H  Q  W  K  P  T  K  Y  F  C  P  R :   P  H  *  F  G  H  Q  E  E  H  L  D  W  W  *  *  L  *  E  W  S  N  Q  D  E  V  S  G  G  *  F  P  F  W  S  W  N  *  </second_frame>
            <third_frame>   L  C  L  L  D  G  W  K  Q  W  F  S  L  D  W  R  C  Y  C  *  Q  R  :  R  N  F  M  G  Y  Q  G  C  A  A  S  Q  L  L  W  F  S  Y  T  G  L  Y  Y  S  S  W  V  L  Q  W  T  G  D  L  Y  F  L  *  E  H  T  S  H   : G  *  S  I  Q  M  M  *  C  L  E  N  G  T  S  A  T  *  I  W  Q  M  T  W  Q  E  L  M  F  L  T  L  I  F  K  S  N  *  G  P  T  W  N  P  W  S  H  S  L  :  T  L  I  S  L  L  Q  T  K  A  H  V  L  T  L  S  S  K  E  P  R  K  I  K  L  I  K  L  L   : R  Y  I  R  E  F  K  E  N  N  K  V  D  K  V  V  V  L  W  T  A  N  T  K  R  Y  S  S  V  V  V  G  F  N  D  T  M  E  N  L  F  A  S  V  D  R  N  E  A  E  I  S  P  S  T  L  Y  A  I  A  G  I  L  E  N  V  P  F  I  N  G  S  P  Q  N  T  F  V  P   : G  L  I  D  L  A  I  K  R  N  T  *  I  G  G  D  N  F  K  S  G  Q  T  K  M  K  S  V  V  V  D  F  L  F  G  A  G  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128G23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7630" stop="7606"/>
                    <exon start="7513" stop="7381"/>
                    <exon start="6970" stop="6825"/>
                    <exon start="6774" stop="6687"/>
                    <exon start="6606" stop="6597"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEVLLLTEKEFHGLPRMCSKPITLVLLHRPLLFELGPSMDRRSILPLRAYFPWLIHPDDVVFGEWDISNMNLADDMARANVFDVDLQKQLRPYMESMVPFPDPDFIAANQGSRANIVIKGTKKDQVDQIIKVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128G23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6857" stop="6825"/>
                    <exon start="6774" stop="6687"/>
                    <exon start="6606" stop="6370"/>
                    <exon start="6260" stop="6226"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPTWNPWSHSLTLISLLQTKAHVLTLSSKEPRKIKLIKLLRYIREFKENNKVDKVVVLWTANTKRYSSVVVGFNDTMENLFASVDRNEAEISPSTLYAIAGILENVPFINGSPQNTFVPGLIDLAIKRNT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128G23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6606" stop="6370"/>
                    <exon start="6260" stop="6186"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GILGSLRRTTKSTRWWSCGLPTPKDTAVWLLALMIPWKTSLLLWIEMRPKYLLPPCMLLLVFLKMYPSSMEAHKILLSQASLIWPSRGTLRLVVITLRVVKPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6900" e_stop="6838"/>
            <exon e_start="6787" e_stop="6687"/>
            <exon e_start="6606" e_stop="6370"/>
            <exon e_start="6260" e_stop="6146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.921"/>
          <exon-intron don_prob="0.651" acc_prob="0.990" e_score="0.792"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="0.962"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="6900" e_stop="6838" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6837" i_stop="6788" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.792">
            <gDNA_exon_boundary e_start="6787" e_stop="6687" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.651" acc_prob="0.990">
            <gDNA_intron_boundary i_start="6686" i_stop="6607" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="0.962">
            <gDNA_exon_boundary e_start="6606" e_stop="6370" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="6369" i_stop="6261" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="0.922">
            <gDNA_exon_boundary e_start="6260" e_stop="6146" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6900" stop="6838"/>
              <exon start="6787" stop="6687"/>
              <exon start="6606" stop="6370"/>
              <exon start="6260" stop="6146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729326" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGAGCTAATGTTTTTGACGTTGATCTTCAAAAGCAACTGAGGCCCTACATGGAATCCATG : CCTGGTATCTATGACCCTGATTTCATTGCTGCAAACCAAGGCTCACGTGCTAACATTGTCATCAAAGGAACCAAGAAAGATCAAGTTGATCAAATTATTAA : GGTATATTAGGGAGTTTAAGGAGAACAACAAAGTCGACAAGGTGGTGGTCCTGTGGACTGCCAACACCAAAAGATACAGCAGTGTGGTTGTTGGCTTTAATGATACCATGGAAAACCTCTTTGCTTCTGTGGATAGAAATGAGGCCGAAATATCTCCTTCCACCTTGTATGCTATTGCTGGTATTCTTGAAAATGTACCCTTCATCAATGGAAGCCCACAAAATACTTTTGTCCCAG : GCCTCATTGATTTGGCCATCAAGAGGAACACTTAGATTGGTGGTGATAACTTTAAGAGTGGTCAAACCAAGATGAAGTCAGTGGTGGTTGATTTCCTTTTTGGAGCTGGAATTAA</gDNA_template>
            <first_frame> A  R  A  N  V  F  D  V  D  L  Q  K  Q  L  R  P  Y  M  E  S  M  :  P  G  I  Y  D  P  D  F  I  A  A  N  Q  G  S  R  A  N  I  V  I  K  G  T  K  K  D  Q  V  D  Q  I  I  K :   V  Y  *  G  V  *  G  E  Q  Q  S  R  Q  G  G  G  P  V  D  C  Q  H  Q  K  I  Q  Q  C  G  C  W  L  *  *  Y  H  G  K  P  L  C  F  C  G  *  K  *  G  R  N  I  S  F  H  L  V  C  Y  C  W  Y  S  *  K  C  T  L  H  Q  W  K  P  T  K  Y  F  C  P  R :   P  H  *  F  G  H  Q  E  E  H  L  D  W  W  *  *  L  *  E  W  S  N  Q  D  E  V  S  G  G  *  F  P  F  W  S  W  N  * </first_frame>
            <second_frame>  Q  E  L  M  F  L  T  L  I  F  K  S  N  *  G  P  T  W  N  P  C :   L  V  S  M  T  L  I  S  L  L  Q  T  K  A  H  V  L  T  L  S  S  K  E  P  R  K  I  K  L  I  K  L  L   : R  Y  I  R  E  F  K  E  N  N  K  V  D  K  V  V  V  L  W  T  A  N  T  K  R  Y  S  S  V  V  V  G  F  N  D  T  M  E  N  L  F  A  S  V  D  R  N  E  A  E  I  S  P  S  T  L  Y  A  I  A  G  I  L  E  N  V  P  F  I  N  G  S  P  Q  N  T  F  V  P   : G  L  I  D  L  A  I  K  R  N  T  *  I  G  G  D  N  F  K  S  G  Q  T  K  M  K  S  V  V  V  D  F  L  F  G  A  G  I   </second_frame>
            <third_frame>   K  S  *  C  F  *  R  *  S  S  K  A  T  E  A  L  H  G  I  H   : A  W  Y  L  *  P  *  F  H  C  C  K  P  R  L  T  C  *  H  C  H  Q  R  N  Q  E  R  S  S  *  S  N  Y  *  :  G  I  L  G  S  L  R  R  T  T  K  S  T  R  W  W  S  C  G  L  P  T  P  K  D  T  A  V  W  L  L  A  L  M  I  P  W  K  T  S  L  L  L  W  I  E  M  R  P  K  Y  L  L  P  P  C  M  L  L  L  V  F  L  K  M  Y  P  S  S  M  E  A  H  K  I  L  L  S  Q  :  A  S  L  I  W  P  S  R  G  T  L  R  L  V  V  I  T  L  R  V  V  K  P  R  *  S  Q  W  W  L  I  S  F  L  E  L  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128G23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6857" stop="6838"/>
                    <exon start="6787" stop="6687"/>
                    <exon start="6606" stop="6370"/>
                    <exon start="6260" stop="6226"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPTWNPCLVSMTLISLLQTKAHVLTLSSKEPRKIKLIKLLRYIREFKENNKVDKVVVLWTANTKRYSSVVVGFNDTMENLFASVDRNEAEISPSTLYAIAGILENVPFINGSPQNTFVPGLIDLAIKRNT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128G23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6606" stop="6370"/>
                    <exon start="6260" stop="6186"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GILGSLRRTTKSTRWWSCGLPTPKDTAVWLLALMIPWKTSLLLWIEMRPKYLLPPCMLLLVFLKMYPSSMEAHKILLSQASLIWPSRGTLRLVVITLRVVKPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="40761" PGL_stop="39483"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40761" e_stop="39483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="40761" e_stop="39483" e_length="1279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40761" stop="40343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40760" stop="40136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40760" stop="40419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40231" stop="39566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40142" stop="39483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40142" stop="39483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40141" stop="39740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233596" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGTGATGTGGATTATTCAAGAATCAAAGTCGATTTGCTTTATAAAAAGAAGATATCAATGATCTTCTATGAAATGGTTTCACGGGATTCAACCAATTGTCTTGATCGTGGAATATCATTGAGAAATAGGAATCCGGGTTATCAAAGGATTTCCTACCATTATTTCTAGTACGGAATGAGTCAATCATCCACTTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCATTGATCAAGAATTTCAATTTTTGGGAAGTATCATGATCGTCCAATAAGAAGGGTTTCAATTATTTCAAATGAACATATTTGAAGACCTATTGATTCTAACAACTGATTGCAGAGTTGATCATTCGGACCTTTCAATTCTTCATAGATGTCGATCTCGGACCTATGAATGGGGATATTTCAGAAACTCACACAGAAAAAAGGAAGTGAGTTAGACAAAAAAAAGCAACTTGGACAAAAAAAGAAGTGACTTGGACAAAAAGAAACGAAGTGACTTAGACAAATCTTTTTTTGTCGATAACCTCAGACCAATCAATCAAATATTGATTAATACGTAATCGATCGAACAATACTTGAAAACGACTCTTCTTCTTCGAAACGGACTGTTCCAAATGTTCCTGGAAACCCTTACTCCCATTGGACCATTTGTATCTATATGCATCAGGATCCCGATTCATAGATCTCTCGGTTCGAGAAATCAAAATGAGAGGCTCAAACCATTTCTTGTGACTCTTTTTCAAATTCGATAAATATTGGTTGATCTTATATTTCATTATAGTTCTATGATTCAGAGTATCCTTTCCTATTTGATCCCTTTGAATTCCATATTCGAAGTTGCGTGGATCTATTCATTAAAAAGAATCGATTCCATACATTTCTTATGTACCCATAGGTACTATATTGGATTTGAATCAGATTTCGGATCAATCTATATTGAGTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCACTATTTTTGGCTTTGGATCTTCCAAATCATTCCCGCTGGAGATCCTGACCCATTTTTTTTATGATCCTTCCAGAAAAAGATTCATTCTCTTCACAAAAAATAGGAGGTAGAACCAATAAAGATTTCTTTTTCGATTCATCCCTGGCCTCATTCAAGAATTGTTTTTGATCCAATCCGCAGGAATCAATAGAAAAGGCAAATCCCTTATGATACACCAGATCCGGCTCGGTTATTCATAGAGTGAATAAATCTGCCATTTCTTGAAATCTCTCTTCTGATGCAAAATCGTAGT</gDNA_template>
            <first_frame> E  V  M  W  I  I  Q  E  S  K  S  I  C  F  I  K  R  R  Y  Q  *  S  S  M  K  W  F  H  G  I  Q  P  I  V  L  I  V  E  Y  H  *  E  I  G  I  R  V  I  K  G  F  P  T  I  I  S  S  T  E  *  V  N  H  P  L  W  Y  L  I  E  Q  K  W  *  Y  C  S  S  I  D  Q  E  F  Q  F  L  G  S  I  M  I  V  Q  *  E  G  F  Q  L  F  Q  M  N  I  F  E  D  L  L  I  L  T  T  D  C  R  V  D  H  S  D  L  S  I  L  H  R  C  R  S  R  T  Y  E  W  G  Y  F  R  N  S  H  R  K  K  E  V  S  *  T  K  K  S  N  L  D  K  K  R  S  D  L  D  K  K  K  R  S  D  L  D  K  S  F  F  V  D  N  L  R  P  I  N  Q  I  L  I  N  T  *  S  I  E  Q  Y  L  K  T  T  L  L  L  R  N  G  L  F  Q  M  F  L  E  T  L  T  P  I  G  P  F  V  S  I  C  I  R  I  P  I  H  R  S  L  G  S  R  N  Q  N  E  R  L  K  P  F  L  V  T  L  F  Q  I  R  *  I  L  V  D  L  I  F  H  Y  S  S  M  I  Q  S  I  L  S  Y  L  I  P  L  N  S  I  F  E  V  A  W  I  Y  S  L  K  R  I  D  S  I  H  F  L  C  T  H  R  Y  Y  I  G  F  E  S  D  F  G  S  I  Y  I  E  *  L  P  P  L  C  C  C  *  Q  I  P  L  F  L  A  L  D  L  P  N  H  S  R  W  R  S  *  P  I  F  F  M  I  L  P  E  K  D  S  F  S  S  Q  K  I  G  G  R  T  N  K  D  F  F  F  D  S  S  L  A  S  F  K  N  C  F  *  S  N  P  Q  E  S  I  E  K  A  N  P  L  *  Y  T  R  S  G  S  V  I  H  R  V  N  K  S  A  I  S  *  N  L  S  S  D  A  K  S  *  </first_frame>
            <second_frame>  K  *  C  G  L  F  K  N  Q  S  R  F  A  L  *  K  E  D  I  N  D  L  L  *  N  G  F  T  G  F  N  Q  L  S  *  S  W  N  I  I  E  K  *  E  S  G  L  S  K  D  F  L  P  L  F  L  V  R  N  E  S  I  I  H  F  G  I  L  L  N  K  N  G  D  I  V  P  P  L  I  K  N  F  N  F  W  E  V  S  *  S  S  N  K  K  G  F  N  Y  F  K  *  T  Y  L  K  T  Y  *  F  *  Q  L  I  A  E  L  I  I  R  T  F  Q  F  F  I  D  V  D  L  G  P  M  N  G  D  I  S  E  T  H  T  E  K  R  K  *  V  R  Q  K  K  A  T  W  T  K  K  E  V  T  W  T  K  R  N  E  V  T  *  T  N  L  F  L  S  I  T  S  D  Q  S  I  K  Y  *  L  I  R  N  R  S  N  N  T  *  K  R  L  F  F  F  E  T  D  C  S  K  C  S  W  K  P  L  L  P  L  D  H  L  Y  L  Y  A  S  G  S  R  F  I  D  L  S  V  R  E  I  K  M  R  G  S  N  H  F  L  *  L  F  F  K  F  D  K  Y  W  L  I  L  Y  F  I  I  V  L  *  F  R  V  S  F  P  I  *  S  L  *  I  P  Y  S  K  L  R  G  S  I  H  *  K  E  S  I  P  Y  I  S  Y  V  P  I  G  T  I  L  D  L  N  Q  I  S  D  Q  S  I  L  S  D  C  L  H  Y  V  V  A  S  K  Y  H  Y  F  W  L  W  I  F  Q  I  I  P  A  G  D  P  D  P  F  F  L  *  S  F  Q  K  K  I  H  S  L  H  K  K  *  E  V  E  P  I  K  I  S  F  S  I  H  P  W  P  H  S  R  I  V  F  D  P  I  R  R  N  Q  *  K  R  Q  I  P  Y  D  T  P  D  P  A  R  L  F  I  E  *  I  N  L  P  F  L  E  I  S  L  L  M  Q  N  R  S </second_frame>
            <third_frame>   S  D  V  D  Y  S  R  I  K  V  D  L  L  Y  K  K  K  I  S  M  I  F  Y  E  M  V  S  R  D  S  T  N  C  L  D  R  G  I  S  L  R  N  R  N  P  G  Y  Q  R  I  S  Y  H  Y  F  *  Y  G  M  S  Q  S  S  T  L  V  S  Y  *  T  K  M  V  I  L  F  L  H  *  S  R  I  S  I  F  G  K  Y  H  D  R  P  I  R  R  V  S  I  I  S  N  E  H  I  *  R  P  I  D  S  N  N  *  L  Q  S  *  S  F  G  P  F  N  S  S  *  M  S  I  S  D  L  *  M  G  I  F  Q  K  L  T  Q  K  K  G  S  E  L  D  K  K  K  Q  L  G  Q  K  K  K  *  L  G  Q  K  E  T  K  *  L  R  Q  I  F  F  C  R  *  P  Q  T  N  Q  S  N  I  D  *  Y  V  I  D  R  T  I  L  E  N  D  S  S  S  S  K  R  T  V  P  N  V  P  G  N  P  Y  S  H  W  T  I  C  I  Y  M  H  Q  D  P  D  S  *  I  S  R  F  E  K  S  K  *  E  A  Q  T  I  S  C  D  S  F  S  N  S  I  N  I  G  *  S  Y  I  S  L  *  F  Y  D  S  E  Y  P  F  L  F  D  P  F  E  F  H  I  R  S  C  V  D  L  F  I  K  K  N  R  F  H  T  F  L  M  Y  P  *  V  L  Y  W  I  *  I  R  F  R  I  N  L  Y  *  V  T  A  S  I  M  L  L  L  A  N  T  T  I  F  G  F  G  S  S  K  S  F  P  L  E  I  L  T  H  F  F  Y  D  P  S  R  K  R  F  I  L  F  T  K  N  R  R  *  N  Q  *  R  F  L  F  R  F  I  P  G  L  I  Q  E  L  F  L  I  Q  S  A  G  I  N  R  K  G  K  S  L  M  I  H  Q  I  R  L  G  Y  S  *  S  E  *  I  C  H  F  L  K  S  L  F  *  C  K  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128G23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="42251" PGL_stop="41572"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42251" e_stop="41572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="42251" e_stop="41572" e_length="680"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42251" stop="41580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42242" stop="41572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATTTTCTGTCGTTAAGGTGGAGAACTGAACCAAGAATTCTCTTTCCTCATCATCAATCGAATCACTGTTCGCGACCCAAGATTCTATTTTCTCATCAATCCAATCCCTATTCACATTTTTTCTTTTTCTTATCAATGATAGATCTTTTTACTTGTATGACTTAGATGTCTCGTATTTCTCAAAAAAGTGATTCGATTTATGGGATTCGGTATGAGATCGATGATCTCGATGAGATTAATATTTCAATGTTTCTTCTTAGAACGTATTGATTTGACCCCATAAGCGGGACCAAGCATGTTGCCGCCAGAAGCAGAACCCCGTATTTATTCTAGAGAATTTCCTAATTGTTCCAGAGCAGCTAGAAAGAGATTCTTTAACCAAAAAAAATTCGGTTCAGTTGTAGGATACCTATCTAGAAGTTTTCGCAACTCAATCATAGATGAAGGAGTCATCAAACATTTTACCCTTTCGAACTCTGTCTGTAACTCACTAGAGGCCCGGGAAACAAAGAGAAGACGTGTACGAACAAGATATCTAGCAACAAGGAGAAGGAAAAGGATTGAATAGAGGAACTCCCGAGCATTTGGCGATCTCAGATGTGTCGATATCAATGGTGACTCATTATTTCGATGAATCATTTCTTCGAACAGAAGAAGATTATGTAAACACTTACTCAAG</gDNA_template>
            <first_frame> L  F  S  V  V  K  V  E  N  *  T  K  N  S  L  S  S  S  S  I  E  S  L  F  A  T  Q  D  S  I  F  S  S  I  Q  S  L  F  T  F  F  L  F  L  I  N  D  R  S  F  Y  L  Y  D  L  D  V  S  Y  F  S  K  K  *  F  D  L  W  D  S  V  *  D  R  *  S  R  *  D  *  Y  F  N  V  S  S  *  N  V  L  I  *  P  H  K  R  D  Q  A  C  C  R  Q  K  Q  N  P  V  F  I  L  E  N  F  L  I  V  P  E  Q  L  E  R  D  S  L  T  K  K  N  S  V  Q  L  *  D  T  Y  L  E  V  F  A  T  Q  S  *  M  K  E  S  S  N  I  L  P  F  R  T  L  S  V  T  H  *  R  P  G  K  Q  R  E  D  V  Y  E  Q  D  I  *  Q  Q  G  E  G  K  G  L  N  R  G  T  P  E  H  L  A  I  S  D  V  S  I  S  M  V  T  H  Y  F  D  E  S  F  L  R  T  E  E  D  Y  V  N  T  Y  S   </first_frame>
            <second_frame>  Y  F  L  S  L  R  W  R  T  E  P  R  I  L  F  P  H  H  Q  S  N  H  C  S  R  P  K  I  L  F  S  H  Q  S  N  P  Y  S  H  F  F  F  F  L  S  M  I  D  L  F  T  C  M  T  *  M  S  R  I  S  Q  K  S  D  S  I  Y  G  I  R  Y  E  I  D  D  L  D  E  I  N  I  S  M  F  L  L  R  T  Y  *  F  D  P  I  S  G  T  K  H  V  A  A  R  S  R  T  P  Y  L  F  *  R  I  S  *  L  F  Q  S  S  *  K  E  I  L  *  P  K  K  I  R  F  S  C  R  I  P  I  *  K  F  S  Q  L  N  H  R  *  R  S  H  Q  T  F  Y  P  F  E  L  C  L  *  L  T  R  G  P  G  N  K  E  K  T  C  T  N  K  I  S  S  N  K  E  K  E  K  D  *  I  E  E  L  P  S  I  W  R  S  Q  M  C  R  Y  Q  W  *  L  I  I  S  M  N  H  F  F  E  Q  K  K  I  M  *  T  L  T  Q  </second_frame>
            <third_frame>   I  F  C  R  *  G  G  E  L  N  Q  E  F  S  F  L  I  I  N  R  I  T  V  R  D  P  R  F  Y  F  L  I  N  P  I  P  I  H  I  F  S  F  S  Y  Q  *  *  I  F  L  L  V  *  L  R  C  L  V  F  L  K  K  V  I  R  F  M  G  F  G  M  R  S  M  I  S  M  R  L  I  F  Q  C  F  F  L  E  R  I  D  L  T  P  *  A  G  P  S  M  L  P  P  E  A  E  P  R  I  Y  S  R  E  F  P  N  C  S  R  A  A  R  K  R  F  F  N  Q  K  K  F  G  S  V  V  G  Y  L  S  R  S  F  R  N  S  I  I  D  E  G  V  I  K  H  F  T  L  S  N  S  V  C  N  S  L  E  A  R  E  T  K  R  R  R  V  R  T  R  Y  L  A  T  R  R  R  K  R  I  E  *  R  N  S  R  A  F  G  D  L  R  C  V  D  I  N  G  D  S  L  F  R  *  I  I  S  S  N  R  R  R  L  C  K  H  L  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128G23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41967" stop="41683"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGPSMLPPEAEPRIYSREFPNCSRAARKRFFNQKKFGSVVGYLSRSFRNSIIDEGVIKHFTLSNSVCNSLEARETKRRRVRTRYLATRRRKRIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="54001" PGL_stop="54414"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54001" e_stop="54414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="54001" e_stop="54414" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54001" stop="54414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTGGAAAATCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCATGACAGCAAAACTGAAGCTGCAGGCCACCAAATCCAACTCTATCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGCGAATCACAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTCTCTCTTTTGGCTGCTGAAAAACTCTCT</gDNA_template>
            <first_frame> H  Q  D  L  R  G  K  S  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  A  T  K  Q  V  P  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  V  H  D  S  K  T  E  A  A  G  H  Q  I  Q  L  Y  Q  F  L  I  K  D  *  D  E  D  N  M  L  S  K  N  Q  L  N  R  T  R  N  E  A  R  I  T  I  *  S  W  L  L  W  L  D  F  *  L  R  I  S  L  F  F  S  L  L  A  A  E  K  L  S </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  S  M  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  W  P  Q  N  K  C  Q  T  T  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  A  K  S  P  I  S  Q  L  L  F  M  T  A  K  L  K  L  Q  A  T  K  S  N  S  I  S  S  *  S  K  I  E  M  K  I  I  C  C  P  K  I  S  S  I  G  Q  E  T  K  R  E  S  Q  F  E  V  G  C  Y  G  W  I  F  D  C  E  F  L  S  F  S  L  F  W  L  L  K  N  S   </second_frame>
            <third_frame>   P  R  F  T  W  K  I  L  R  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  H  K  T  S  A  K  Q  R  A  T  T  K  *  D  C  T  K  S  R  E  L  K  E  Q  N  H  Q  F  R  S  Y  C  S  *  Q  Q  N  *  S  C  R  P  P  N  P  T  L  S  V  P  N  Q  R  L  R  *  R  *  Y  A  V  Q  K  S  A  Q  S  D  K  K  R  S  A  N  H  N  L  K  L  V  V  M  A  G  F  L  T  A  N  F  S  L  F  L  S  F  G  C  *  K  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128G23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="58719" PGL_stop="59141"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58719" e_stop="59141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="58719" e_stop="59141" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58719" stop="59141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCAAAATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTAACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCGACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCGGCTCAATCGGACAAGAAACGAAGCAGGAATCGCAATTTGAATTTTGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTCTCTCTTTTGGCTGCTGAAAAACTCTCTCTGTGTATC</gDNA_template>
            <first_frame> H  Q  N  L  R  G  K  P  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  A  T  K  Q  V  P  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  V  N  D  S  K  T  E  A  A  D  H  Q  I  R  L  C  Q  F  L  I  K  D  *  D  E  D  N  M  L  S  K  N  R  L  N  R  T  R  N  E  A  G  I  A  I  *  I  L  L  L  W  L  D  F  *  L  R  I  S  L  F  F  S  L  L  A  A  E  K  L  S  L  C  I </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  S  M  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  W  P  Q  N  K  C  Q  T  T  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  A  K  S  P  I  S  Q  L  L  L  T  T  A  K  L  K  L  Q  T  T  K  S  D  S  V  S  S  *  S  K  I  E  M  K  I  I  C  C  P  K  I  G  S  I  G  Q  E  T  K  Q  E  S  Q  F  E  F  C  C  Y  G  W  I  F  D  C  E  F  L  S  F  S  L  F  W  L  L  K  N  S  L  C  V   </second_frame>
            <third_frame>   P  K  F  T  W  K  T  L  R  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  H  K  T  S  A  K  Q  R  A  T  T  K  *  D  C  T  K  S  R  E  L  K  E  Q  N  H  Q  F  R  S  Y  C  *  R  Q  Q  N  *  S  C  R  P  P  N  P  T  L  S  V  P  N  Q  R  L  R  *  R  *  Y  A  V  Q  K  S  A  Q  S  D  K  K  R  S  R  N  R  N  L  N  F  V  V  M  A  G  F  L  T  A  N  F  S  L  F  L  S  F  G  C  *  K  T  L  S  V  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128G23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="91955" PGL_stop="92131"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91955" e_stop="92131"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="91955" e_stop="92131" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91955" stop="92131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACATTGCCTCAAATGGAGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCTGCCAAGGGTAAGAAGTTATCCCAATGACCACCAAATTCTATCACACATGCACGAAGCATATCCTCCAATACCTGAATCGTTCGCTCAGACTAACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  I  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  L  P  Q  M  E  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  L  P  R  V  R  S  Y  P  N  D  H  Q  I  L  S  H  M  H  E  A  Y  P  P  I  P  E  S  F  A  Q  T  N  H   </second_frame>
            <third_frame>   T  S  P  P  I  H  C  L  K  W  S  H  I  N  T  *  V  I  A  I  I  V  *  K  L  C  Q  G  *  E  V  I  P  M  T  T  K  F  Y  H  T  C  T  K  H  I  L  Q  Y  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128G23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="95991" PGL_stop="95336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95991" e_stop="95336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="95991" e_stop="95336" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95991" stop="95336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGATTAACCAGGTTCTTTCTTATCTTAGCGGATTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTACACCAGCACCTCAGGTTCCGAGAGTACAACATGCAACTGCTATGGCTTCCCGCGTGGATGCCTCATTGGAAATGGGCACGTTTGTTCAATTGACTACAGGGATTATAATGACGAGTGATCAGCATGAACTTTTCACTAAGTTCTTGAAGTTGAAACCTCCAGTATTCAAGGGTGGTGAATCTGAGGACGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTAAATAAGATGGACATAGTGGAACGATTCGGTGTTGAGTTTGTGACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCAGTCGTATGTTGACTGTCAACCGGCACAGGAACCAACTATGAGTTGGGCATCATTCTCTAGCCTATTTATGGAAAAGTATATACCCCGGACTTTGAGAGATAGGAGGAGAGATGAGTTCTTTAGCCTAGAGCAAGGCAGGATGTCGGTTACTACTTATGAGGCTAAGTTTCATGCATTATCCAGGTATGCCACCCAGCTTTGCTTCAGTTCACAAGAGCGGATTCACCGTTTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGTCTTACAGGTAGCT</gDNA_template>
            <first_frame> R  *  L  T  R  F  F  L  I  L  A  D  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  W  A  R  L  F  N  *  L  Q  G  L  *  *  R  V  I  S  M  N  F  S  L  S  S  *  S  *  N  L  Q  Y  S  R  V  V  N  L  R  T  P  M  I  F  W  L  I  V  M  S  C  *  I  R  W  T  *  W  N  D  S  V  L  S  L  *  P  I  S  F  R  E  M  P  K  C  G  G  S  R  M  L  T  V  N  R  H  R  N  Q  L  *  V  G  H  H  S  L  A  Y  L  W  K  S  I  Y  P  G  L  *  E  I  G  G  E  M  S  S  L  A  *  S  K  A  G  C  R  L  L  L  M  R  L  S  F  M  H  Y  P  G  M  P  P  S  F  A  S  V  H  K  S  G  F  T  V  L  *  R  D  *  G  Q  I  C  R  F  Q  S  Y  R  *   </first_frame>
            <second_frame>  D  D  *  P  G  S  F  L  S  *  R  I  I  *  S  R  P  D  T  S  S  V  F  Y  T  S  T  S  G  S  E  S  T  T  C  N  C  Y  G  F  P  R  G  C  L  I  G  N  G  H  V  C  S  I  D  Y  R  D  Y  N  D  E  *  S  A  *  T  F  H  *  V  L  E  V  E  T  S  S  I  Q  G  W  *  I  *  G  R  L  *  F  S  G  *  L  S  *  A  A  K  *  D  G  H  S  G  T  I  R  C  *  V  C  D  L  S  V  S  G  K  C  Q  N  V  V  A  V  V  C  *  L  S  T  G  T  G  T  N  Y  E  L  G  I  I  L  *  P  I  Y  G  K  V  Y  T  P  D  F  E  R  *  E  E  R  *  V  L  *  P  R  A  R  Q  D  V  G  Y  Y  L  *  G  *  V  S  C  I  I  Q  V  C  H  P  A  L  L  Q  F  T  R  A  D  S  P  F  C  E  G  I  E  V  R  F  A  D  S  S  L  T  G  S  </second_frame>
            <third_frame>   M  I  N  Q  V  L  S  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  T  P  A  P  Q  V  P  R  V  Q  H  A  T  A  M  A  S  R  V  D  A  S  L  E  M  G  T  F  V  Q  L  T  T  G  I  I  M  T  S  D  Q  H  E  L  F  T  K  F  L  K  L  K  P  P  V  F  K  G  G  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  N  K  M  D  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  Q  S  Y  V  D  C  Q  P  A  Q  E  P  T  M  S  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  R  R  D  E  F  F  S  L  E  Q  G  R  M  S  V  T  T  Y  E  A  K  F  H  A  L  S  R  Y  A  T  Q  L  C  F  S  S  Q  E  R  I  H  R  F  V  K  G  L  R  S  D  L  Q  I  P  V  L  Q  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128G23.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95989" stop="95336"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MINQVLSYLSGLSDQGQTPPVFSTPAPQVPRVQHATAMASRVDASLEMGTFVQLTTGIIMTSDQHELFTKFLKLKPPVFKGGESEDAYDFLVDCHELLNKMDIVERFGVEFVTYQFQGNAKMWWQSYVDCQPAQEPTMSWASFSSLFMEKYIPRTLRDRRRDEFFSLEQGRMSVTTYEAKFHALSRYATQLCFSSQERIHRFVKGLRSDLQIPVLQVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="100985" PGL_stop="100268"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100985" e_stop="100268"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="100985" e_stop="100268" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100985" stop="100268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100836" stop="100277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395006" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100812" stop="100277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250407" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100780" stop="100277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGGTTGAGAATCGAACAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATCTCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAACCATTTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACAACTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATCAAGCAAACTTGGCTGAATCCAAAGGAGATATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTAGTGCCTCATGTCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAAGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAATGATGGCCTTTTCAAACTAAATGTAATTGTAGTTGATATGAATAAACATTTTGCTTCTTCTTACTTGCTTGA</gDNA_template>
            <first_frame> *  G  *  E  S  N  R  I  I  R  L  Q  K  R  G  H  V  V  I  Q  Q  S  L  E  *  I  L  L  K  K  I  P  Q  N  *  R  K  E  R  N  H  L  V  Q  K  A  I  L  L  R  R  N  S  M  E  T  T  L  I  V  V  N  M  V  I  G  L  M  N  V  G  V  L  R  R  T  R  K  R  K  I  K  Q  T  W  L  N  P  K  E  I  W  M  I  S  V  Q  C  F  Q  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  V  P  H  V  M  F  V  P  T  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  K  N  C  L  W  Q  T  P  L  L  Q  R  W  K  E  L  A  K  S  Y  *  R  *  H  Q  A  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  Q  F  *  P  R  M  D  L  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  E  K  A  T  L  M  M  A  F  S  N  *  M  *  L  *  L  I  *  I  N  I  L  L  L  L  T  C  L  </first_frame>
            <second_frame>  K  V  E  N  R  T  G  *  *  G  C  R  K  E  V  T  W  *  F  S  N  L  W  S  K  F  C  *  R  R  F  H  K  I  K  E  K  K  E  T  I  W  S  K  K  Q  S  S  *  E  E  I  Q  W  K  Q  L  *  L  W  *  T  W  S  *  G  *  *  M  S  G  S  *  E  G  Q  E  K  E  R  S  S  K  L  G  *  I  Q  R  R  Y  G  *  S  L  C  N  A  F  R  M  *  L  G  W  K  S  K  R  M  V  D  R  F  *  C  L  M  S  C  L  C  Q  Q  R  I  I  F  I  I  Y  S  S  T  Y  R  *  K  I  V  Y  G  K  L  R  C  C  K  G  G  K  N  W  Q  S  P  I  K  D  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  S  S  D  Q  E  W  I  *  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  K  R  L  P  *  *  W  P  F  Q  T  K  C  N  C  S  *  Y  E  *  T  F  C  F  F  L  L  A  * </second_frame>
            <third_frame>   R  L  R  I  E  Q  D  N  K  A  A  E  K  R  S  R  G  N  S  A  I  S  G  V  N  F  V  E  E  D  S  T  K  L  K  K  R  K  K  P  F  G  P  K  S  N  P  P  K  K  K  F  N  G  N  N  F  N  C  G  K  H  G  H  R  A  N  E  C  R  G  P  K  K  D  K  K  K  K  D  Q  A  N  L  A  E  S  K  G  D  M  D  D  L  C  A  M  L  S  E  C  N  L  V  G  N  P  R  E  W  W  I  D  S  S  A  S  C  H  V  C  A  N  K  E  L  F  S  S  Y  T  P  A  L  T  D  E  K  L  F  M  A  N  S  V  V  A  K  V  E  R  T  G  K  V  L  L  K  M  T  S  G  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  P  V  L  T  K  N  G  F  K  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  Y  L  N  D  G  L  F  K  L  N  V  I  V  V  D  M  N  K  H  F  A  S  S  Y  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128G23.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100983" stop="100270"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLRIEQDNKAAEKRSRGNSAISGVNFVEEDSTKLKKRKKPFGPKSNPPKKKFNGNNFNCGKHGHRANECRGPKKDKKKKDQANLAESKGDMDDLCAMLSECNLVGNPREWWIDSSASCHVCANKELFSSYTPALTDEKLFMANSVVAKVERTGKVLLKMTSGKVVTLNRVSYVPELRKNLVSIPVLTKNGFKCVFVSDKVVVSKNDMYVGKGYLNDGLFKLNVIVVDMNKHFASSYLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="102152" PGL_stop="100997"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102152" e_stop="101181"/>
            <exon e_start="101108" e_stop="100997"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="0.923"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="102152" e_stop="101181" e_length="972"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="101180" i_stop="101109" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="101108" e_stop="100997" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102152" stop="101453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102112" stop="101414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102111" stop="101484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101975" stop="101392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101890" stop="101181"/>
              <exon start="101108" stop="101087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101890" stop="101446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101856" stop="101181"/>
              <exon start="101108" stop="101012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101676" stop="101181"/>
              <exon start="101108" stop="100997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACTTGTTACTGTTCTTAAGTTCGTTGAAGTTAAAGAAATTTGAAGTACCGCTATTTCTTTAATGGGTTTAATCCGTGTTATCTTGGAAGAAATTAATCCATAACCTTCGGTACAGTGAGGGGATTAAATTCCTTAAGAACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTGTATTTTTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACCTTATAAATAAAGGTTATTGTAAGAAAAACAATCTTAAGAAATTTCACAGTTTTTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTATTAAAATTTATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGGTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACCGGCTAAGAAACCTGCAAAAATTTCTGGAGTCAACATTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTTAGATCAATCTCCTGCTGATGAATGATTCTTGGTAACAGAAGCATGGACGCACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACGGCACTGCTAAAACCTCAAAAGAACTCTGGGGTGCTTTAGAAAAGAAGTACAAAACAGAAGATGCGGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTATATGATGATAGACAGTAAGACTGTTATCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAG : GATTGATTGTGAATGATGCTTTTCTAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAATGCAAAGAGTTCACTGTTGA</gDNA_template>
            <first_frame> *  L  V  T  V  L  K  F  V  E  V  K  E  I  *  S  T  A  I  S  L  M  G  L  I  R  V  I  L  E  E  I  N  P  *  P  S  V  Q  *  G  D  *  I  P  *  E  H  T  V  V  S  V  D  S  D  Y  F  L  Y  F  F  L  L  H  L  I  S  V  S  V  Y  *  P  Y  K  *  R  L  L  *  E  K  Q  S  *  E  I  S  Q  F  L  Y  L  R  F  L  E  I  K  T  F  M  V  F  Y  S  A  *  I  I  K  I  Y  S  I  N  D  *  K  N  I  K  T  L  S  L  N  Q  K  Q  F  V  *  R  F  G  L  Y  C  *  Y  F  K  Y  L  I  Y  L  P  F  V  T  E  K  K  *  L  I  Q  V  K  Q  M  L  G  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  K  F  L  E  S  T  L  R  D  G  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  S  M  R  M  F  L  L  C  *  I  N  L  L  L  M  N  D  S  W  *  Q  K  H  G  R  T  Q  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  T  A  L  L  K  P  Q  K  N  S  G  V  L  *  K  R  S  T  K  Q  K  M  R  E  *  R  N  S  L  W  Q  N  F  W  T  I  *  *  *  T  V  R  L  L  S  P  K  F  K  N  C  R  S  *  S  M  I  S  L  L  K  :  D  *  L  *  M  M  L  F  *  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  K  S  S  L  L  </first_frame>
            <second_frame>  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  W  V  *  S  V  L  S  W  K  K  L  I  H  N  L  R  Y  S  E  G  I  K  F  L  K  N  T  Q  *  F  L  W  T  R  I  I  S  C  I  F  F  C  F  I  L  F  L  F  L  F  I  N  L  I  N  K  G  Y  C  K  K  N  N  L  K  K  F  H  S  F  C  I  *  G  F  W  R  L  K  P  L  W  F  S  T  L  L  E  L  L  K  F  I  R  L  T  I  K  R  T  *  K  L  Y  R  *  I  R  N  S  L  C  K  D  L  V  F  T  V  S  I  L  N  T  *  F  I  C  H  L  *  Q  K  K  N  D  *  F  K  S  N  K  C  W  D  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  N  F  W  S  Q  H  *  E  M  V  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  *  E  C  S  C  Y  V  R  S  I  S  C  *  *  M  I  L  G  N  R  S  M  D  A  L  R  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  C  V  R  H  C  *  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  G  N  E  E  I  H  C  G  K  I  S  G  L  Y  D  D  R  Q  *  D  C  Y  H  P  S  S  R  I  A  G  H  N  P  *  S  P  C  *  R :   I  D  C  E  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  T  Q  M  Q  R  V  H  C  * </second_frame>
            <third_frame>   T  C  Y  C  S  *  V  R  *  S  *  R  N  L  K  Y  R  Y  F  F  N  G  F  N  P  C  Y  L  G  R  N  *  S  I  T  F  G  T  V  R  G  L  N  S  L  R  T  H  S  S  F  C  G  L  G  L  F  L  V  F  F  S  A  S  S  Y  F  C  F  C  L  L  T  L  *  I  K  V  I  V  R  K  T  I  L  R  N  F  T  V  F  V  F  E  V  S  G  D  *  N  L  Y  G  F  L  L  C  L  N  Y  *  N  L  F  D  *  R  L  K  E  H  K  N  F  I  V  K  S  E  T  V  C  V  K  I  W  S  L  L  L  V  F  *  I  L  N  L  S  A  I  C  D  R  K  K  M  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  V  A  L  A  P  A  K  K  P  A  K  I  S  G  V  N  I  K  R  W  *  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  E  N  V  P  V  M  L  D  Q  S  P  A  D  E  *  F  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  G  T  A  K  T  S  K  E  L  W  G  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  Y  M  M  I  D  S  K  T  V  I  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E   : G  L  I  V  N  D  A  F  L  V  A  A  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  H  K  C  K  E  F  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0128G23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101451" stop="101181"/>
                    <exon start="101108" stop="100999"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLVTEAWTHSDFLCKNYILSGLQDDLYNVYGTAKTSKELWGALEKKYKTEDAGMKKFIVAKFLDYMMIDSKTVITQVQELQVIIHDLLAEGLIVNDAFLVAAIIEKLPPLWKDFKNYLKHKCKEFTV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="152074" PGL_stop="151691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="152074" e_stop="151691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="152074" e_stop="151691" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="152074" stop="151848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="152064" stop="151691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACATGTTTCTTGCTGAAAATGGCTATAAAAGGAAGGCAATTTTTGATTTTTCAAACACTTAAAATTTTTCTTTCTGTGCATTTATTTTCTCTCAAATAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTAGTTGATGTTCTTAAGTTCATTGAAGTTAATGAAATTTAAAGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACACTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTATTTCTTGTATTTTTTTTCTCTGCTTCATCTTATTTCTGTTTCTTTTTATTAACCTTATAAATACACGTTATTGTAAGAATAAC</gDNA_template>
            <first_frame> R  H  V  S  C  *  K  W  L  *  K  E  G  N  F  *  F  F  K  H  L  K  F  F  F  L  C  I  Y  F  L  S  N  K  N  Q  S  V  D  R  L  S  L  C  D  *  L  M  F  L  S  S  L  K  L  M  K  F  K  V  P  L  F  L  *  *  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  T  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  I  S  C  I  F  F  L  C  F  I  L  F  L  F  L  F  I  N  L  I  N  T  R  Y  C  K  N  N </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  A  I  F  D  F  S  N  T  *  N  F  S  F  C  A  F  I  F  S  Q  I  K  I  K  V  S  I  D  *  V  C  V  T  S  *  C  S  *  V  H  *  S  *  *  N  L  K  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  L  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  F  L  V  F  F  F  S  A  S  S  Y  F  C  F  F  L  L  T  L  *  I  H  V  I  V  R  I   </second_frame>
            <third_frame>   T  C  F  L  L  K  M  A  I  K  G  R  Q  F  L  I  F  Q  T  L  K  I  F  L  S  V  H  L  F  S  L  K  *  K  S  K  C  R  S  T  E  S  V  *  L  V  D  V  L  K  F  I  E  V  N  E  I  *  S  T  A  I  S  L  I  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  H  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  Y  F  L  Y  F  F  S  L  L  H  L  I  S  V  S  F  Y  *  P  Y  K  Y  T  L  L  *  E  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0128G23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 242 chains have been computed
$ 
$ memory statistics:
$ 368976 bytes spliced alignments in total
$ 34 spliced alignments have been stored
$ 10852 bytes was the average size of a spliced alignment
$ 16488 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1648 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 276 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:31:41
-->
