<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 11:42:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7030" ref_strand="+" ref_description="SGN-M7030 C2_At1g71820 [cosii_markers]">
      <seq>cataaagaagagggtggtagactaagagaatattttgaagatgtggattgaacatgggagacgtttgagaagacactgtgggcccatattgcaaatttctccaaactggcttagggtagcccacaaacactcgtccgtgctataagggttgttgaaatgcaagaaatcctagatcaacaactcgcagaagaagcagctgaggctgagggaggtggtgctatggcttcagtcgcaaatcctcgaagaaatgccaaaaaaacaacttcttctaaaaatctcacacagcagaagttgaaggctcagggaaaaggctacaaggacaaatgttatgaaagtataaggaagtctgttgaagcacgttttgacaaattgctcgatgagcaagaccttaaaacagctatagaggaagctagagtgataggagaagagcttggagagatatatgactatgtggctccttgttttcctccaagatatgaagttttccagctcatggtaaatctttatacagagagatttgttcagtggctgagaaagatgagtgatcaagctagtaatatgacaaatatagagattttaaaggtaacaggttgggtggttgattaccaagaaagtctaattgagcttggagttgatgattctttagctcaagtttgctcagagagtggtgcaatggatcctctcatgaatgcgtatgttgagagaatgcaagctacaacaaagaaatggtacttgaatatcctagaggcagacaaagtacagccacctaaaaagactgatgatgggaaactatatacacctgccgccgttgacttatttaggattctgggggagcaggtgcaaattgtgcgagaaaatagcactgatgtcatgttatacaggatcgctttggctctcattcaggtaatgattgattttcaagcagctgagaggaagagattggaggaacctgcttctgaaattggtctggaatccctatgtgcaatgattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="16776" stop="23375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17080" g_stop="17172" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="119" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17173" i_stop="17832" i_length="660">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17833" g_stop="17859" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="146" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17860" i_stop="18083" i_length="224">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18084" g_stop="18191" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="254" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18192" i_stop="18295" i_length="104">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18296" g_stop="18458" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="417" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18459" i_stop="19582" i_length="1124">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19583" g_stop="19638" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="473" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19639" i_stop="20362" i_length="724">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20363" g_stop="20471" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="582" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20472" i_stop="21554" i_length="1083">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21555" g_stop="21695" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="723" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21696" i_stop="21783" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21784" g_stop="21963" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="903" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21964" i_stop="22988" i_length="1025">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="22989" g_stop="23072" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="904" r_stop="987" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-M7030" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>961</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17080" e_stop="17172"/>
          <exon e_start="17833" e_stop="17859"/>
          <exon e_start="18084" e_stop="18191"/>
          <exon e_start="18296" e_stop="18458"/>
          <exon e_start="19583" e_stop="19638"/>
          <exon e_start="20363" e_stop="20471"/>
          <exon e_start="21555" e_stop="21695"/>
          <exon e_start="21784" e_stop="21963"/>
          <exon e_start="22989" e_stop="23072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATTTTGAAGATGTGGATAGAACATGGGAGACGTTTGAGAAGACACTGTGGGCCCATATTGCAAATTTCTCCAAACTGGCTAAGGATAGGTATTCTTTATTGTTTAAAGAATCATTTATCAAGCTTTCCAATCACGCTGCCTGCATTACGATAATCTTGTTCGTGGAAGTTAATATTTGTGATTCATGATTACTAAGTACATAATTCATGATTACAAAGAATGCATAGATGGATGAATGATCTAATGAATGAACAAATGATAATATATATGAAATATTGTAGTTGTTTCACTCATATCTTAATCTGTAGGAGACAAAGTGCTGCAAGATTAATAGTGCAACGAGGAATCTAGGCTAGACAACACCATGTAATATGTTTGCACTGTTACCTAGATCCTACATGTTTGTCCACATACAATCACTTAGCTCAAAAGCTACAGTATCACTTTAAGCTTCTCATTTTCTCCTTCATATTTTTATTCTTGGTTCTGTACTCTGAATCTTTGCTCTATAACCACTTTTACAGATCTAGTTTGCTTTCCATCTATCTTTATTGAAATATTATGATTTGTGTATGTCATTTATAATTTTTAGTGAACTAATTTCTTCATGTACCTTATAGGAAAAATGAGTAACTTATTCTTCACGTGTTAATTGGCATCTTCTAGTTTGTGCTGAATCTCTTAAATTTCATTTATTTATTTTTTGAATTCTGATTATGATATTTGTTTTGTTTGGCATAATTTGCAGCCCACAAACACTCGTCCGTGCTATAAGGTATGTTAGCTTAAATGGAAACTTTCATGGTCTATGCTGAGTTGATTAATAAGACATTTGTTTCCATTTCTAATTAACGTACTTGTACTGTGTCGGAGCTGCCCCTAATATGCCATTAATCTTGACGTATATTGCACATATACAGTGTATAGTACCTTCATGCTCATCAATACATGTTACATGTATCCACGATCTAGACTGATAATTTATTCACCCTTAATCAGGGTTGTTGAAATGCAAGAAATCCTAGATCAACAACTCGCAGAAGAAGCAGCTGAGGCTGAGGGAGGTGGTGCTATGGCTTCAGTCGCAAATCCTCGAAGAAATGCCAAGTAGGTGCTTTATCTTGCCTGATTTGTGCTTTGTTTAACGTCGTGCGTGCATCAGACATGTAAAAGTCATCAATTTGTATTCTGATTAATGTATTGGCTTGCAGAAAAACAACTTCTTCTAAAAATCTCACACAGCAGAAGTTGAAGGCTCAGGGAAAAGGCTACAAGGACAAATGTTATGAAAGTATAAGGAAGTCTGTTGAAGCACGTTTTGACAAATTGCTCGATGAGCAAGACCTTAAAACAGCTATAGAGGAAGCTAGAGTGGTTAGAATATCTGCTTTTACATGTGGTCGTCTTCAACTTGCCTGCATTTAGAAGTTAAAACTGTTTACTTCTCCAAAGACAGTTTTTATAATCGACAAATTGAAAGATAATGGTTCTAAAGTAGACTTTGATATGGTTAAAGAAAACATATGTTCATCTTTTATGAAGTCTTTCTATCAAAACTCTTGATGCTTATCAAGGACCTCGTTGCCTTTCATGTATAGTCATATATGTTGACACAAATTGTCCCCATTTTTCTTCATCTTTCTGACAAAATACCAAGCTTTCCAGAGCACGTGCCCCATTTTAGTTGCTGATATCACGCTTTCCTAACTAATGTCTTGTTAACGACTCAACTAGCTTTCTGATGGAGCAGACATTGAGTGATTTGACACATTTGGCACCTGTAGGTCTTAGACTATCATTTCTCCCCAATTTGGCACACCTTTGTTATCTTGTCTTTTTTGAGTTCAACTGCCATCATTGATCATGCGAAAGAACTGCTTGAATTGCAAGGCTGTTGTCTCACCCAATCAGTTATAGGAAATGGTCAGGAACACCTTAAAGGATTTACAAGGGATACAGCAATGAGAAGAAAACTAAGGAGAAATGGAACTCTGGGAGAAGACGCACAATTGACTACACTCCTTAAATAGTGAAATAGTAAACAATCAAAGACAAGGTGGATGTGATGATACAAATAAAACATATGTTGCGAGAATTGAGTTCTTATCTGAATAGTAAACAATTAGAACCCTTTCCATGGGGGTGCATGTCATGCTTTTCTTTTTAAAGCCTTTTGGTTTGAAAAAAATCAAGATACTTTTCTCCGTAAGACATGTCATGATGGGTTTTAACATATTATATCAACACATAAATTTGTTGAGAAGATGATTAGATAAGGCGTTCTTGGAATTGATCCCCATTAGTTTCTTTGCTTGATAAAGAAAGAACATCTGTAAACAGTAGGAGGAAGAAATCAAGGTGAGAGATACATCCTCCTGCCATAGATGAATGACAAAGTAGAGGAAAATTAAACTTTGCTGTGATATGAGTTTATTCTCATAATAATTGCAGTTATTCTTTCTTATTTTGGTTTTGACATGCAATCTCATCAATTTCAGATAGGAGAAGAGCTTGGAGAGATATATGACTATGTGGCTCCTTGTTTTCCTCCAAGGTTCGTCCTATGTCTTTACACATATGTAATGTCATTTTCTTTTCCATTTGTCGGGAACAACTAGATTAAAGAATAATCTCCTACACTACTCATACTCTTAAGATTGTCCTCAGGACATTCCCACTATCTCAAATTTGGGTCTGTTGTATTCATCAGAGACTATGTTGGAAGTTTCTTCTCAATTTTGGAGATTACTTGGCAAAATAACTCTTCTTTAATCAGGAGTCCCGGGGATAAGAAATGAAGTCAATTTTTGGCCCTGTTGTATCCATTATATTACTATTGTAGTAATATACAAAGTTAACCTGTTCAAAAAAAAAAAAAACTCTCATCTCTAACATTAGTCACAATCTGAAATGCTTCTCATTGCTATTAATTGCTTTCTATGACTGCTAAAGTATAATTTTCTGCATTACTCAATGTTATATAGTCGATCAACATGATGTGATGTTCTTAATATTTTTGTTGATAAGAGAAGTTTCACATGCATCTTGTCAGTACAATTTTCTTCAAAAGCTTTTTTTAGCTGTAAGCTACTGCTTGTGCTAAATAGGCCTGAATTTTGGTCTTTATCATGCAACACTTTCAACTCAGAGGCATCAAAAAAAAGGGAAAAAATAACTCAAGAGGAGTCTGTATCCTAATATCTCTTAACACATGATCTACTTCTGTTTCTTTTCCATATGCAAATGTCCATTCTAACTTATTCTTTATATTGTCTCAGATATGAAGTTTTCCAGCTCATGGTAAATCTTTATACAGAGAGATTTGTTCAGTGGCTGAGAAAGATGAGTGATCAAGCTAGTAATATGACAAATATAGAGATTTTAAAGGTAATGCAATATTAATCATGTTGGCATTTTCTTTCTGTTGGATTATTTTGGCATGAGATTCTGTTGTTTGTTTGATTAAAAGTTAGAGAATATAGAGATCTTATAAAATATTGAATATGGAAGTCACAAAAAAGCATATATCAGTTTCTCTAATCTGAATAATATTTGGTATTAATTCCTATGTTGTGGTCATAAGCTCATCACTTTGAGGTCAAAGTTTGGCATGATTTGTTCAGTGGTTGAGAAAGCTGACGACCAAGCTAATAATATGATGAGTATATAGATTTTAAAGTTAATACAACTTTAATCATATCGGCATTTTCTTTTCTTTTCTTTTGGATAAGTTGAGGATTATGCTGGCAGTAGAATTTGTTGTTAAATTAAAAGCTGGAAAATATTGAATTTTGTAGAATAGGGAAGTCGTTAAAAAAGCATTTCAACCAGTTATTCCATATCTAATGAATATTTGACATCAATCCCTATGTTGTGGTCATAGGCTCATAGCTTCGAGTCAAAATTTGGTCAAATATGATTGTTTCTTTTACTACTTCTGGGCTTCTTTATTTTGACTTTATACAAATTAGGGGGTTCAATTTTTTACCTTCTTATCCTTGCTTGTAATTTATCTCAATGTTACTGGATTGTGCTTCCATTCTTGTAAATTTTCATGGGTAGTGCTATAGTATCCAATTGTGGCCCATGGGGCAGTAGTCTGAAGTTCCTTATCCATGTTAACTGTCCACCTAATAGGCTCATGGCTCAGTTTTGGTTCTTTCAACCAGTAATAAATTTCTATCAAGAAAAAGACAGTCAAGTATAAGGGTTTCACTTTGGTTTCCTATCCCCCTTTCTGATTCTTTTGGTAACTGGGCTGCTGTGTCCATGAGCTACATAATTCTGCAAAAGCGAAGTTCAGTTTCCAGGCTCATGCATAATTAGCTATAACTACTTCCCATCATCATTTCAGCATGAAGATATTCATCTTCCAATAATCTTTTTTTATGGGTGAGCAAATGGGTTCTCTCCTTTGCAAGAGATGTTACTATGATTCAGAATTGAGGTGTTTTTGAATCCGTGAATTAGGTAACAGGTTGGGTGGTTGATTACCAAGAAAGTCTAATTGAGCTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAGGTTTAAACTCGATTCATTATCTTTATTGCTTTCATATTATTTTAAGACATAGATAATGCTGACTCTTTCATGTCATTTCCTAATATAGAAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCTGCCGCCGTTGACTTATTTAGGATTCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATCGCTTTGGCTCTCATTCAGGTAAGTTTGTTGCTTTCAATTTATATTAGGACAGATATTATGTTAATTTTAAGAATGAAAATGTCTTCTTCACCATTACTGGATCATTCTGCTTCAGTCTGTCTTATCTCTCTCTCTCTCTCTCTCCTCCTTTTCTTCTCGAGAATCACTATCTTGCCTATATACTTAACTGAGAATATTTTACTCGAGGTTGCCTTTTGATCAGTGTGGGAGGACTTGTTCTATTTATTAGAATTCTTTCTATTAGGTTTTAGCAACTGGAGCAATTCTTCTGGTATTTCAAGCTTCTAAGTTCTATTGTCTTGCACTCTATTATCAGAGAGTGGGAGGACTTGTTCTATTTGAAATTAATCTATTTATTAGAGATCCTTCCATTAGTGCTCTAGTTTTAGTAGTTGGAGTAATTTTTCTGGTATTTCAAGATTCAAAGATCTATTGTCTTGTATTTGTACTTATATACAATGAATTTAGCTGGCTAATTCATTATATACATCTACAAGGGAAAATCTTCAATGCTTTGCATTCTATTGCATCATAATCATGCATGTGTTAAGCAAAAAAAAAAAGAGAAGCTCAAATTTCTGGAATTTTTTGCTAAAATTTTCCTTTGAAGTAGGGCCTGATGGTGCATGGTTCTGTCAGCATTTTTTCTGAAGTAATTTTTCTCAACAAATTTGTACAAGAGATTCTCAAGCACTTTTAGTTTTTATAGAAAATATTTCATGAGGACTGAAGTATTATTTGAATTTTGTTGAGAGAAGTAGTTATCCTGAAATGCTTCATCTTTTATATTCTTGCTCAAGAAGAACCATTTTTTTTTTCAGTTTAAGTTGCCGTTCTATCCTTTGATGAGGGGAGAGAAGGAGGGAATGAATCTTTTGTTTTGATGATTATTGGTTTCCCCCTCTTTTATGTGTGTGTTTTTAAGATAACCTGCTTGATCAGACGTCAAAAATCTTGTCCAGAAACTGAAGGGACTTATTCTTATTTCTCTCTAATGATTACTTGATAATGTTGCTTTCCAGGTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATG</genome_strand>
        <mrna_strand>AGAATATTTTGAAGATGTGGATTGAACATGGGAGACGTTTGAGAAGACACTGTGGGCCCATATTGCAAATTTCTCCAAACTGGCTTAGGGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACAAACACTCGTCCGTGCTATAAG................................................................................................................................................................................................................................GGTTGTTGAAATGCAAGAAATCCTAGATCAACAACTCGCAGAAGAAGCAGCTGAGGCTGAGGGAGGTGGTGCTATGGCTTCAGTCGCAAATCCTCGAAGAAATGCCAA........................................................................................................AAAAACAACTTCTTCTAAAAATCTCACACAGCAGAAGTTGAAGGCTCAGGGAAAAGGCTACAAGGACAAATGTTATGAAAGTATAAGGAAGTCTGTTGAAGCACGTTTTGACAAATTGCTCGATGAGCAAGACCTTAAAACAGCTATAGAGGAAGCTAGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGGAGAAGAGCTTGGAGAGATATATGACTATGTGGCTCCTTGTTTTCCTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAAGTTTTCCAGCTCATGGTAAATCTTTATACAGAGAGATTTGTTCAGTGGCTGAGAAAGATGAGTGATCAAGCTAGTAATATGACAAATATAGAGATTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGTTGGGTGGTTGATTACCAAGAAAGTCTAATTGAGCTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAG........................................................................................AAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCTGCCGCCGTTGACTTATTTAGGATTCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATCGCTTTGGCTCTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7030-2" ref_strand="+" ref_description="SGN-M7030-2 C2_At1g71820-2 [cosii_markers]">
      <seq>accaagctaataatatgacaaatatagaaattttaaaggtaacaggttgggtggtcgattaccaagaaagtctaattgaacttggagttgatgattctttagctcaagtttgctcagagagtggtgcaatggatcctctcatgaatgcgtatgttgagagaatgcaagctacaacaaagaaatggtacttgaatatccttgaggcagacaaagtacagccacctaaaaagacagatgatgggaaactatatacacctgctgccgttgacttatttaggatcctgggggagcaggtgcaaattgtgcgagaaaatagcactgatgtcatgttatacaggattgctttggctctcattcaggtaatgattgattttcaagcagctgagaggaagagattggaggaacctgcttctgaaattggtctggaatccctatgtgcaatgattaacaacaatcttcgctgttatgatcttgcgatggagctaagttctagtactcttgaagctctcccacagaactatgctgagcaggttaattttgaggacacttgcaaagggtttctagaggttgcaaaggaagctgttcatcaaactgttagtgttatctttgaagatccaggagtagaggaactgctcgttaaattgtatcagaaagattggctggaaggacaggttaccgagttcctagttgcaacatttggagactacttcactgatgtgaagatgtacattgaagaaagatcatttaggcgttttgttgaggcttgcctggnagagactgttgttgtatatgtggatcatctacttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="20134" stop="29571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20434" g_stop="20471" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20472" i_stop="21554" i_length="1083">
            <donor d_prob="0.889" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21555" g_stop="21695" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="179" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21696" i_stop="21783" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21784" g_stop="21963" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="359" r_length="180" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21964" i_stop="22988" i_length="1025">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22989" g_stop="23072" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="443" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23073" i_stop="23171" i_length="99">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23172" g_stop="23258" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="530" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23259" i_stop="24680" i_length="1422">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24681" g_stop="24725" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="575" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24726" i_stop="26767" i_length="2042">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26768" g_stop="26846" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="654" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26847" i_stop="28901" i_length="2055">
            <donor d_prob="0.651" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28902" g_stop="28971" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="724" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="28972" i_stop="29186" i_length="215">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29187" g_stop="29271" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="809" r_length="85" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-M7030-2" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7030-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20434" e_stop="20471"/>
          <exon e_start="21555" e_stop="21695"/>
          <exon e_start="21784" e_stop="21963"/>
          <exon e_start="22989" e_stop="23072"/>
          <exon e_start="23172" e_stop="23258"/>
          <exon e_start="24681" e_stop="24725"/>
          <exon e_start="26768" e_stop="26846"/>
          <exon e_start="28902" e_stop="28971"/>
          <exon e_start="29187" e_stop="29271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGCTAGTAATATGACAAATATAGAGATTTTAAAGGTAATGCAATATTAATCATGTTGGCATTTTCTTTCTGTTGGATTATTTTGGCATGAGATTCTGTTGTTTGTTTGATTAAAAGTTAGAGAATATAGAGATCTTATAAAATATTGAATATGGAAGTCACAAAAAAGCATATATCAGTTTCTCTAATCTGAATAATATTTGGTATTAATTCCTATGTTGTGGTCATAAGCTCATCACTTTGAGGTCAAAGTTTGGCATGATTTGTTCAGTGGTTGAGAAAGCTGACGACCAAGCTAATAATATGATGAGTATATAGATTTTAAAGTTAATACAACTTTAATCATATCGGCATTTTCTTTTCTTTTCTTTTGGATAAGTTGAGGATTATGCTGGCAGTAGAATTTGTTGTTAAATTAAAAGCTGGAAAATATTGAATTTTGTAGAATAGGGAAGTCGTTAAAAAAGCATTTCAACCAGTTATTCCATATCTAATGAATATTTGACATCAATCCCTATGTTGTGGTCATAGGCTCATAGCTTCGAGTCAAAATTTGGTCAAATATGATTGTTTCTTTTACTACTTCTGGGCTTCTTTATTTTGACTTTATACAAATTAGGGGGTTCAATTTTTTACCTTCTTATCCTTGCTTGTAATTTATCTCAATGTTACTGGATTGTGCTTCCATTCTTGTAAATTTTCATGGGTAGTGCTATAGTATCCAATTGTGGCCCATGGGGCAGTAGTCTGAAGTTCCTTATCCATGTTAACTGTCCACCTAATAGGCTCATGGCTCAGTTTTGGTTCTTTCAACCAGTAATAAATTTCTATCAAGAAAAAGACAGTCAAGTATAAGGGTTTCACTTTGGTTTCCTATCCCCCTTTCTGATTCTTTTGGTAACTGGGCTGCTGTGTCCATGAGCTACATAATTCTGCAAAAGCGAAGTTCAGTTTCCAGGCTCATGCATAATTAGCTATAACTACTTCCCATCATCATTTCAGCATGAAGATATTCATCTTCCAATAATCTTTTTTTATGGGTGAGCAAATGGGTTCTCTCCTTTGCAAGAGATGTTACTATGATTCAGAATTGAGGTGTTTTTGAATCCGTGAATTAGGTAACAGGTTGGGTGGTTGATTACCAAGAAAGTCTAATTGAGCTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAGGTTTAAACTCGATTCATTATCTTTATTGCTTTCATATTATTTTAAGACATAGATAATGCTGACTCTTTCATGTCATTTCCTAATATAGAAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCTGCCGCCGTTGACTTATTTAGGATTCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATCGCTTTGGCTCTCATTCAGGTAAGTTTGTTGCTTTCAATTTATATTAGGACAGATATTATGTTAATTTTAAGAATGAAAATGTCTTCTTCACCATTACTGGATCATTCTGCTTCAGTCTGTCTTATCTCTCTCTCTCTCTCTCTCCTCCTTTTCTTCTCGAGAATCACTATCTTGCCTATATACTTAACTGAGAATATTTTACTCGAGGTTGCCTTTTGATCAGTGTGGGAGGACTTGTTCTATTTATTAGAATTCTTTCTATTAGGTTTTAGCAACTGGAGCAATTCTTCTGGTATTTCAAGCTTCTAAGTTCTATTGTCTTGCACTCTATTATCAGAGAGTGGGAGGACTTGTTCTATTTGAAATTAATCTATTTATTAGAGATCCTTCCATTAGTGCTCTAGTTTTAGTAGTTGGAGTAATTTTTCTGGTATTTCAAGATTCAAAGATCTATTGTCTTGTATTTGTACTTATATACAATGAATTTAGCTGGCTAATTCATTATATACATCTACAAGGGAAAATCTTCAATGCTTTGCATTCTATTGCATCATAATCATGCATGTGTTAAGCAAAAAAAAAAAGAGAAGCTCAAATTTCTGGAATTTTTTGCTAAAATTTTCCTTTGAAGTAGGGCCTGATGGTGCATGGTTCTGTCAGCATTTTTTCTGAAGTAATTTTTCTCAACAAATTTGTACAAGAGATTCTCAAGCACTTTTAGTTTTTATAGAAAATATTTCATGAGGACTGAAGTATTATTTGAATTTTGTTGAGAGAAGTAGTTATCCTGAAATGCTTCATCTTTTATATTCTTGCTCAAGAAGAACCATTTTTTTTTTCAGTTTAAGTTGCCGTTCTATCCTTTGATGAGGGGAGAGAAGGAGGGAATGAATCTTTTGTTTTGATGATTATTGGTTTCCCCCTCTTTTATGTGTGTGTTTTTAAGATAACCTGCTTGATCAGACGTCAAAAATCTTGTCCAGAAACTGAAGGGACTTATTCTTATTTCTCTCTAATGATTACTTGATAATGTTGCTTTCCAGGTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATGGTTTGTAAAATTTGGAAATCTGAACTGTTTATTGTGAAGTAGAAAGATCTTTAAATTACCCTGTGCTTACCACTATGCTAAGAGATGGACACCTGGCAGATTAACAACAATCTTCGCTGTTATGATCTCGCGATGGAGCTAAGTTCTAGTACTCTTGAAGCTCTCCCACAGAACTATGCTGAGCAGGTCCTTATTAGTTTTTCCCTCCTCCTTGACTGCTGCGTAAATCTTCTGTGCTTACTGCCCTTTTGTCTTCAATCATCTTGACCATTAGCTTACATCTAGGATTAATCTGATAGGATATTATTCTTTCATGTCGATTTTTTTTTTAAAAAGATAATAGACTAAGGTGGTTCGTATGTGAATGTCTTTAGTTCTTATTATTGTTAAAATATTGCTGTGGTCTTGTGCATCTTGCTGGTGTTATTATATTTTACTTTTTACTTCTTGGTTAGGAGAACAGAGTCTTGTTCTTTTGATAGGTGTAAATAGAGTCTCATTTATAAGGTAGTAAGGGTGTACAGGAGGACTGGTGTCCATAACTATAGGAAAATGTTACTTCTGATTCTGATAAAAATGAACCATCCGATCTCACTGAGTGTTGGTAAATACTTGCTGATCATAAAAATTAATTATCAATAAAAAGGATACCATGTAGAAAGATGGAGAGCAATATTTAAAACATGTCCTGAAAGAAACTTACCTTAGAAGTATTGACATTGGGCTGTAACCAAAAACTTAATATGACGACCAATTATGTATGTTTCCAGAGAAAAAACGCCACCCTTTTTCTGCAATAAAAGTCCAATGTTTTCCAGTTAAAGACTCAAGAAATGAAGTGAAGTACATAAAACTTATCAAACAGTCATATAACCTCTGCCACTAGCTCTTGCCAAAGAAAAATGGATGAACGGGTCACATTGCTCTTCTATAACAAATGTAATGATGTAGGTTACTAATCCAGAAAGGACCTACAATCAGAATAGCCCGCTTCATGTGAGTAAATCATGACTTCATGAGGCAATGTAACATAAAAGAATCAGAAGTTGGGTGCAGAAATATGAGCATCTATGATGTTTCTATACCTCTGTGTGAATGTGTGGGCATGTGTGTATGTTTCAATCAAATATTCCTTCTCACAAGCCTCCCCATTCAAGCAACTCCTGCTATTCCCCTTCATTGTCGATGAGAGTGGAGATTCTGCACGGCAGCAGTGGTACAACCTTCATGGCTCGATACTATCATATTTTACGATTAAGATGATCTAATCTAGTACATAGACCAGCTAATGCCTGATGTAGACCAGCAAGTAGTTCTATCTTTGATGTTGTAGACTATGATTTGTTTTGAATATATGGTTTTCAGAAATGCTTTGTCAAAGAAATATGGATGTCTGATACGGTTAGAGAGTTCTGCATTCAACTCTTCTTATCAATGTGATTATTTGTTACTTCTTAGTTATTTGGTCTGGAAGTTCCATTTCTGGCACTCACATCTTGCTCTTGTCAATGTGATTATTTTTCAAGTCCTAAGTTGTTTGTGCTACAACTTGCATTTCTGGCACTCAAGTTCACATCTCTTATATTAAGTTCTTTGATTGCTTCTCAGGTTAATTTTGAGGACACTTGCAAAGGGTTTCTAGAGGTTGCAAAGGTATATTGAAGGCTTCATTTTATGGATGCATGTGACTATAATATTGTAATTAAGTGGGCAACCTATCTCATTTTGAGGATTGATTCTTTTTTTTTCTTTTGCGACAATCTCTAGAGTTAATTCCGCATTCAATTTTATTGAGGAGTTTAAGGGATGGCCTACTGGAAACTAGATATAAGCCAAATGTAGAGATGGGAAAATTAGCCTTTGAAACATGACCCATTTAACCCCCTAAGTTTGGGTGGGTTATTGACCCGACTATTACAACCCATAAAAATGAGCTTATATGTAGTCCAAATTTACCCATGAGAAATCTTATCAAAATATTATTAAGACATTTTTTTATTTTATGTGTTATATAGCCATAACAAAGAAAATATTGCTTAAGGTTGAAGGTCATCAAAAAATATAGCCATAACAAAGAAAATAAATAGTTTTATTAGGTTCTAAAATTATAAATGATAAAATAAAGCAACGAAAACTTAGTAAAAATTGGGCGGATTGGGTTATGGCTTGTTTTCTAGGCCATTTCAGCCCAAATAGCTTTTTGGCGGGTTATTTTTTGACTTAGCCAGTTTAAAACCTATAGTTAGATATAGGTGCATTAGTTCAATATTGCTTAAGGCTGAAGGTCTCAAGTCAAGGATCGTAAAATCCATGACATGTCTCTTTCCCGAAACAATATTAAAGACCATGTATTCGTTGAGGCACCCTTTGAGGTGCAAAGCATTAGAAAATTGAAGTAGCCTATGAAAATTGTATAACACATCCAAAATCTCTATCATCCTTTCCATTTCAAGAAAATAGAAGGAAATGATATCATATTGGAAATACCAAAGAGTTAAAATTAAGGCTTAGTTTATTATATTTATATCAGGTTGTGTCTTGATAATTTTCTTTTAGTTATATTAGATAGGGTGTTTGACAGGTGTTCTAGGTGTCCTTGTTGTCTGTTTTGGGACTTCCATGCTAGTATGGGAACAAGGGACAAGTGTGAGATTTAAAGAACTTTAAGCGTTATGGAACGCTTAATTCTCCTTAAAAGACAAGTTAATTTGCTAGTGTTGGAATGAAATGGACCAGAGCTTATGGATATGGAAGGCTTGCTTTTTTGTTTTTTTATTGTTAGGATATGAGGGCTTGTTTTTGTTCTGCTTAGCTTTGGATTTGGGCATAATTGATGGATTGGTGGACAACAAAGACTTAGCCTCTCAAACCCTACAAATAAAACCAGACCCACACTGCCGCACAGGCGCACACTGCATTTAAAAATAATTACCAAAGTATCCAACTGCCTAAATCCAAAAGCCCTTTTTGGGTAAGCCCAAATTGGACAACCATCAAAGGTGATTGTCAAAGTTTTTGCTCAGATTGCCCCTTCTTTGGTATGATCTTTATTTTTGCCCCTACTGCTGATTTTATGAAAATTTGTGGGTAAAAATACGATTATAGATGGTCTACTTTTGCTTGACGTAAGTTTAGAGAACTTTTGCCTTATCTGGCGCAGGTTGTGTAGTATCTAATTCGCTTGTCATAAGTTTAGAGAACTTTGGCCTTATCTGGCCTAAGTTTTGTAGTATCTAATTAACTCGTCGTAAGTTTAGAGAACTTTTGCCTTTTCGGCATAATTGTGAAGTATCTAATGCGCTTGGCATAAGATAGAGAACTATTGCTTGTCTGTCATACGTTTTGTTGGAATTAAGTCATGCCTCTTACGAAATAGCTTGTGGGTTCTGAAACTGAATTTGTGCCTCTATTGGCTTAAGTTTTGTAGGAACTAAGTCATGCCTTTTACGGCATAACCTGTAGGTCTTGAAACGAACTGAACTTATGGTAGGGGCATTAGTGCAAATGACCCGTAATTGTCAGTGTTTGTTGCTTAGAGGTCTCAAGTCTTGTCTGAACAGACATATTTGAGAAGGGGCAGAGTAGTGGACTTGACACTTGCGCTGGCAAGAATGGGGAGCGTTAAAGTTCACGGATTAGACTCTCGACTTCCATTTACAAATATCTCGTATCTGACCTGCTCTCACTTATTGCAGGAAGCTGTTCATCAAACTGTCAGTGTTATCTTTGAAGATCCAGGAGTAGAGGAATTGCTCGTTAAATTGTATCAGAAAGGTGAGATGTTCCTCAGATACTTTCTTTTGCTAGGAGCTTTCTCTCCATCTGTTGAAAGCATTTATCTCAGATTTGTTACTATATTTCAGTGTAAACTGTTGGATCTACTCTGTCTTTTTGCTATGTTCACAAAGAGATTCTAATCATTTTACGTCATACAGTGTCTCTAGTTGCTTGTATTTTCTTGAGCATTTTGTATTGTTGTCCCAGTTGGATTATTTTGATTGTATACATGTATTTGCTTCTTTTATAGTTCTGATAATGTTGTCGTCATGATTACTCATATATTGAAGTATCTGCTCAAAGATGAAGAGAAGAAAGCATGAGTTGATCATTTCTCCCTTCATGGCTTCATCTCCAAAATAAGTCTCCATCTTTCCTTCTAGTGTCTAAAAATATAAATGCTGACTGTTCTTACTTGAAAAGAGAAAGGTCTGGTTTATTTATGACACAAGGTTATAAATAACACAATTGTTTCATTTGTTCCTCACAAACCATTTTTCTAATTACTTTGCAAGACAAAAACCGATACATGGTTTCACATGACAAAATATACAGTTTCAACAGTTATTCTAAAAGAAGTTCGTACTTCCAATTTTAAACTAAGGGAAGATTACTCGTAGATTTTGAACTTCCATTTTTGAATATTAGAGTAAGAGAAGTGTTAAATAGTAACATAGAACTGAAAATTACTCTAAGGATAATTATTTTGAAGACATGTCACATCAAAATTAAGATAATATAAATATTACTTGCGTAATTTGAATTGGTATTTGAAAAACAAATAAGCAAAGTTGGTCTTTGTGATGGAACGATACATAATTCTGTGTGGAGTCATTAGCTGTGTGACTTGGCTTAAAATGTCCTTCATTTCTTTGATAACCAAAGAAAGCCCGTTATAGAATCTTTTTTCTTCTTCTTTCATAGAATGTGGCTGCCAGTTACTCTGCCCATCATCTTGTTAATTCCAAATCTTCTATAGGCTCGGGCAGTTATTGTAGGATGTCACAATCAAAAGTTATTGAAAGGATTTTAGAGACTTCTCTTAAACAAAGTCATCCCTAACTCATAGCGTGTTGGTCCTACTTATTTTTGACCTGCAGTACACGCTTGCTTCTTGTTGTACTTTGATGAGATTTTATGGCAATATGATAGTAGAAGGGATGAAGTATTAAAATAAATTATTTTGTAAACATGTTACAACAATTTTCATCCTTGGTTGCATGACAATTTTCGATCAGACAACTAATATGTTAGAAGCGAAAGGACGCCTATCTCTCTTACAATGTAGAAACCTCATCAGCTGTATTCATATACTTGGTGGTACATTAGTTGCCTGTCTTTAGAGGAATAAGAAAATATCCTCCCGTCCCAATTCTCATGATTATCTCTCTTCCATTCTCATTTATCACAAAGTGAATGTTCAGTTTTGTGATGAGGAGCCTTAGGTATTTGTGTTTGATTACCAAAAGTCATGTCAAGTCCAAACTACTCCTCTACTATTCTAAAGACAGAAAATATCATGGTTCCTTTTCCAACTCCCTCATACAATCAGTAGCAGCTATGCATTTTATTCAAGTCCCGGTTTGTCCCCCTTTTACAACCTAGGAATATACATCAATGGGCTTAAAGTAACGCTTTTTGACTAATACACTTTGTTGGTTCAACGAACAATTAATTCTAATTCGTCAAACTGGAATGTTGAGTTTGGATAAAGGGATAGCTAGAATAGATGGATGTAATTAATTTGAAACTAACTTATGGAATTTGCCTAGCAATTAATGGTAGGAACAAGATCTGCAACCGTTATAAACTGTTCTGCAACCTAGCAATGGACGCTAGAAGCAAGATATTTCTAGCCACATAGAAGGAGTCTAACCATTACGTACTGTACCAAATAAAAGCCTTCTATTATCTTTGTGCCTATCAAAAAAATGTGTAGCATTCTGTCAATGAATTAATCCAAGTCAGATATTATGCAAGTGATTTAGGTTGTCAATTGTGATAATTTTAAACTCTAGCCTTCACTTGAATATTCTATGTTCTATATCTCAGATTGGCTGGAAGGACAGGTTACCGAGTTCCTAGTTGCAACGTTTGGAGACTACTTCACTGATGTGAAGATGTGAGTTTTCTTCTGTGCTTAACTCTTATAATAGCTTTGAATGGCATGATCATGTTGCTGTGCTCCTCCCATGGAATTCTTTTTTCTCCTATTCATTTAAGCTATTAAAATATTTTTATGTTCATATGCAGCGGCAGCAACAGTTTTTAATTGAGAGATATCCTAGTATGAGAGGCACATATCCTTAACTCATGTGTGTTTCACAATTTTTAAAGGTACATTGAAGAAAGATCATTTAGGCGTTTTGTTGAGGCTTGCCTGGAGGAGTCTGTTGTTGTATATGTGGATCATCTACTTACC</genome_strand>
        <mrna_strand>ACCAAGCTAATAATATGACAAATATAGAAATTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGTTGGGTGGTCGATTACCAAGAAAGTCTAATTGAACTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAG........................................................................................AAATGGTACTTGAATATCCTTGAGGCAGACAAAGTACAGCCACCTAAAAAGACAGATGATGGGAAACTATATACACCTGCTGCCGTTGACTTATTTAGGATCCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATTGCTTTGGCTCTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATG...................................................................................................ATTAACAACAATCTTCGCTGTTATGATCTTGCGATGGAGCTAAGTTCTAGTACTCTTGAAGCTCTCCCACAGAACTATGCTGAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTTTGAGGACACTTGCAAAGGGTTTCTAGAGGTTGCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGTTCATCAAACTGTTAGTGTTATCTTTGAAGATCCAGGAGTAGAGGAACTGCTCGTTAAATTGTATCAGAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTGGAAGGACAGGTTACCGAGTTCCTAGTTGCAACATTTGGAGACTACTTCACTGATGTGAAGAT.......................................................................................................................................................................................................................GTACATTGAAGAAAGATCATTTAGGCGTTTTGTTGAGGCTTGCCTGGNAGAGACTGTTGTTGTATATGTGGATCATCTACTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="17080" PGL_stop="29271"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17080" e_stop="17172"/>
            <exon e_start="17833" e_stop="17859"/>
            <exon e_start="18084" e_stop="18191"/>
            <exon e_start="18296" e_stop="18458"/>
            <exon e_start="19583" e_stop="19638"/>
            <exon e_start="20363" e_stop="20471"/>
            <exon e_start="21555" e_stop="21695"/>
            <exon e_start="21784" e_stop="21963"/>
            <exon e_start="22989" e_stop="23072"/>
            <exon e_start="23172" e_stop="23258"/>
            <exon e_start="24681" e_stop="24725"/>
            <exon e_start="26768" e_stop="26846"/>
            <exon e_start="28902" e_stop="28971"/>
            <exon e_start="29187" e_stop="29271"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.998" e_score="0.968"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.750" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.971" e_score="0.989"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.651" acc_prob="0.986" e_score="0.975"/>
          <exon-intron don_prob="0.995" acc_prob="0.931" e_score="0.986"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="17080" e_stop="17172" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17173" i_stop="17832" i_length="660"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17833" e_stop="17859" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17860" i_stop="18083" i_length="224"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18084" e_stop="18191" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="18192" i_stop="18295" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18296" e_stop="18458" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.750" acc_prob="0.899">
            <gDNA_intron_boundary i_start="18459" i_stop="19582" i_length="1124"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19583" e_stop="19638" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="19639" i_stop="20362" i_length="724"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20363" e_stop="20471" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.889" acc_prob="0.930">
            <gDNA_intron_boundary i_start="20472" i_stop="21554" i_length="1083"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="21555" e_stop="21695" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="21696" i_stop="21783" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21784" e_stop="21963" e_length="180"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21964" i_stop="22988" i_length="1025"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="22989" e_stop="23072" e_length="84"/>
          </exon>
          <intron i_serial="9" don_prob="0.967" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23073" i_stop="23171" i_length="99"/>
          </intron>
          <exon e_serial="10" e_score="0.989">
            <gDNA_exon_boundary e_start="23172" e_stop="23258" e_length="87"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.971">
            <gDNA_intron_boundary i_start="23259" i_stop="24680" i_length="1422"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="24681" e_stop="24725" e_length="45"/>
          </exon>
          <intron i_serial="11" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="24726" i_stop="26767" i_length="2042"/>
          </intron>
          <exon e_serial="12" e_score="0.975">
            <gDNA_exon_boundary e_start="26768" e_stop="26846" e_length="79"/>
          </exon>
          <intron i_serial="12" don_prob="0.651" acc_prob="0.986">
            <gDNA_intron_boundary i_start="26847" i_stop="28901" i_length="2055"/>
          </intron>
          <exon e_serial="13" e_score="0.986">
            <gDNA_exon_boundary e_start="28902" e_stop="28971" e_length="70"/>
          </exon>
          <intron i_serial="13" don_prob="0.995" acc_prob="0.931">
            <gDNA_intron_boundary i_start="28972" i_stop="29186" i_length="215"/>
          </intron>
          <exon e_serial="14" e_score="0.965">
            <gDNA_exon_boundary e_start="29187" e_stop="29271" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17080" stop="17172"/>
              <exon start="17833" stop="17859"/>
              <exon start="18084" stop="18191"/>
              <exon start="18296" stop="18458"/>
              <exon start="19583" stop="19638"/>
              <exon start="20363" stop="20471"/>
              <exon start="21555" stop="21695"/>
              <exon start="21784" stop="21963"/>
              <exon start="22989" stop="23072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20434" stop="20471"/>
              <exon start="21555" stop="21695"/>
              <exon start="21784" stop="21963"/>
              <exon start="22989" stop="23072"/>
              <exon start="23172" stop="23258"/>
              <exon start="24681" stop="24725"/>
              <exon start="26768" stop="26846"/>
              <exon start="28902" stop="28971"/>
              <exon start="29187" stop="29271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7030-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATATTTTGAAGATGTGGATAGAACATGGGAGACGTTTGAGAAGACACTGTGGGCCCATATTGCAAATTTCTCCAAACTGGCTAAGGATAG : CCCACAAACACTCGTCCGTGCTATAAG : GGTTGTTGAAATGCAAGAAATCCTAGATCAACAACTCGCAGAAGAAGCAGCTGAGGCTGAGGGAGGTGGTGCTATGGCTTCAGTCGCAAATCCTCGAAGAAATGCCAA : AAAAACAACTTCTTCTAAAAATCTCACACAGCAGAAGTTGAAGGCTCAGGGAAAAGGCTACAAGGACAAATGTTATGAAAGTATAAGGAAGTCTGTTGAAGCACGTTTTGACAAATTGCTCGATGAGCAAGACCTTAAAACAGCTATAGAGGAAGCTAGAGTG : ATAGGAGAAGAGCTTGGAGAGATATATGACTATGTGGCTCCTTGTTTTCCTCCAAG : ATATGAAGTTTTCCAGCTCATGGTAAATCTTTATACAGAGAGATTTGTTCAGTGGCTGAGAAAGATGAGTGATCAAGCTAGTAATATGACAAATATAGAGATTTTAAAG : GTAACAGGTTGGGTGGTTGATTACCAAGAAAGTCTAATTGAGCTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAG : AAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCTGCCGCCGTTGACTTATTTAGGATTCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATCGCTTTGGCTCTCATTCAG : GTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATG : ATTAACAACAATCTTCGCTGTTATGATCTCGCGATGGAGCTAAGTTCTAGTACTCTTGAAGCTCTCCCACAGAACTATGCTGAGCAG : GTTAATTTTGAGGACACTTGCAAAGGGTTTCTAGAGGTTGCAAAG : GAAGCTGTTCATCAAACTGTCAGTGTTATCTTTGAAGATCCAGGAGTAGAGGAATTGCTCGTTAAATTGTATCAGAAAG : ATTGGCTGGAAGGACAGGTTACCGAGTTCCTAGTTGCAACGTTTGGAGACTACTTCACTGATGTGAAGAT : GTACATTGAAGAAAGATCATTTAGGCGTTTTGTTGAGGCTTGCCTGGAGGAGTCTGTTGTTGTATATGTGGATCATCTACTTACC</gDNA_template>
            <first_frame> R  I  F  *  R  C  G  *  N  M  G  D  V  *  E  D  T  V  G  P  Y  C  K  F  L  Q  T  G  *  G  *  :  P  T  N  T  R  P  C  Y  K  :  G  C  *  N  A  R  N  P  R  S  T  T  R  R  R  S  S  *  G  *  G  R  W  C  Y  G  F  S  R  K  S  S  K  K  C  Q  :  K  N  N  F  F  *  K  S  H  T  A  E  V  E  G  S  G  K  R  L  Q  G  Q  M  L  *  K  Y  K  E  V  C  *  S  T  F  *  Q  I  A  R  *  A  R  P  *  N  S  Y  R  G  S  *  S   : D  R  R  R  A  W  R  D  I  *  L  C  G  S  L  F  S  S  K  :  I  *  S  F  P  A  H  G  K  S  L  Y  R  E  I  C  S  V  A  E  K  D  E  *  S  S  *  *  Y  D  K  Y  R  D  F  K   : G  N  R  L  G  G  *  L  P  R  K  S  N  *  A  W  S  *  *  F  F  S  S  S  L  L  R  E  W  C  N  G  S  S  H  E  C  V  C  *  E  N  A  S  Y  N  K   : E  M  V  L  E  Y  P  R  G  R  Q  S  T  A  T  *  K  D  *  *  W  E  T  I  Y  T  C  R  R  *  L  I  *  D  S  G  G  A  G  A  N  C  A  R  K  *  H  *  C  H  V  I  Q  D  R  F  G  S  H  S   : G  N  D  *  F  S  S  S  *  E  E  E  I  G  G  T  C  F  *  N  W  S  G  I  P  M  C  N   : D  *  Q  Q  S  S  L  L  *  S  R  D  G  A  K  F  *  Y  S  *  S  S  P  T  E  L  C  *  A   : G  *  F  *  G  H  L  Q  R  V  S  R  G  C  K   : G  S  C  S  S  N  C  Q  C  Y  L  *  R  S  R  S  R  G  I  A  R  *  I  V  S  E  R :   L  A  G  R  T  G  Y  R  V  P  S  C  N  V  W  R  L  L  H  *  C  E  D  :  V  H  *  R  K  I  I  *  A  F  C  *  G  L  P  G  G  V  C  C  C  I  C  G  S  S  T  Y  </first_frame>
            <second_frame>  E  Y  F  E  D  V  D  R  T  W  E  T  F  E  K  T  L  W  A  H  I  A  N  F  S  K  L  A  K  D  S :   P  Q  T  L  V  R  A  I  R :   V  V  E  M  Q  E  I  L  D  Q  Q  L  A  E  E  A  A  E  A  E  G  G  G  A  M  A  S  V  A  N  P  R  R  N  A  K :   K  T  T  S  S  K  N  L  T  Q  Q  K  L  K  A  Q  G  K  G  Y  K  D  K  C  Y  E  S  I  R  K  S  V  E  A  R  F  D  K  L  L  D  E  Q  D  L  K  T  A  I  E  E  A  R  V  :  I  G  E  E  L  G  E  I  Y  D  Y  V  A  P  C  F  P  P  R :   Y  E  V  F  Q  L  M  V  N  L  Y  T  E  R  F  V  Q  W  L  R  K  M  S  D  Q  A  S  N  M  T  N  I  E  I  L  K  :  V  T  G  W  V  V  D  Y  Q  E  S  L  I  E  L  G  V  D  D  S  L  A  Q  V  C  S  E  S  G  A  M  D  P  L  M  N  A  Y  V  E  R  M  Q  A  T  T  K  :  K  W  Y  L  N  I  L  E  A  D  K  V  Q  P  P  K  K  T  D  D  G  K  L  Y  T  P  A  A  V  D  L  F  R  I  L  G  E  Q  V  Q  I  V  R  E  N  S  T  D  V  M  L  Y  R  I  A  L  A  L  I  Q  :  V  M  I  D  F  Q  A  A  E  R  K  R  L  E  E  P  A  S  E  I  G  L  E  S  L  C  A  M  :  I  N  N  N  L  R  C  Y  D  L  A  M  E  L  S  S  S  T  L  E  A  L  P  Q  N  Y  A  E  Q  :  V  N  F  E  D  T  C  K  G  F  L  E  V  A  K  :  E  A  V  H  Q  T  V  S  V  I  F  E  D  P  G  V  E  E  L  L  V  K  L  Y  Q  K   : D  W  L  E  G  Q  V  T  E  F  L  V  A  T  F  G  D  Y  F  T  D  V  K  M :   Y  I  E  E  R  S  F  R  R  F  V  E  A  C  L  E  E  S  V  V  V  Y  V  D  H  L  L  T </second_frame>
            <third_frame>   N  I  L  K  M  W  I  E  H  G  R  R  L  R  R  H  C  G  P  I  L  Q  I  S  P  N  W  L  R  I   : A  H  K  H  S  S  V  L  *   : G  L  L  K  C  K  K  S  *  I  N  N  S  Q  K  K  Q  L  R  L  R  E  V  V  L  W  L  Q  S  Q  I  L  E  E  M  P   : K  K  Q  L  L  L  K  I  S  H  S  R  S  *  R  L  R  E  K  A  T  R  T  N  V  M  K  V  *  G  S  L  L  K  H  V  L  T  N  C  S  M  S  K  T  L  K  Q  L  *  R  K  L  E  * :   *  E  K  S  L  E  R  Y  M  T  M  W  L  L  V  F  L  Q   : D  M  K  F  S  S  S  W  *  I  F  I  Q  R  D  L  F  S  G  *  E  R  *  V  I  K  L  V  I  *  Q  I  *  R  F  *  R :   *  Q  V  G  W  L  I  T  K  K  V  *  L  S  L  E  L  M  I  L  *  L  K  F  A  Q  R  V  V  Q  W  I  L  S  *  M  R  M  L  R  E  C  K  L  Q  Q  R :   N  G  T  *  I  S  *  R  Q  T  K  Y  S  H  L  K  R  L  M  M  G  N  Y  I  H  L  P  P  L  T  Y  L  G  F  W  G  S  R  C  K  L  C  E  K  I  A  L  M  S  C  Y  T  G  S  L  W  L  S  F  R :   *  *  L  I  F  K  Q  L  R  G  R  D  W  R  N  L  L  L  K  L  V  W  N  P  Y  V  Q  * :   L  T  T  I  F  A  V  M  I  S  R  W  S  *  V  L  V  L  L  K  L  S  H  R  T  M  L  S  R :   L  I  L  R  T  L  A  K  G  F  *  R  L  Q  R :   K  L  F  I  K  L  S  V  L  S  L  K  I  Q  E  *  R  N  C  S  L  N  C  I  R  K  :  I  G  W  K  D  R  L  P  S  S  *  L  Q  R  L  E  T  T  S  L  M  *  R   : C  T  L  K  K  D  H  L  G  V  L  L  R  L  A  W  R  S  L  L  L  Y  M  W  I  I  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0149O17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17081" stop="17172"/>
                    <exon start="17833" stop="17859"/>
                    <exon start="18084" stop="18191"/>
                    <exon start="18296" stop="18458"/>
                    <exon start="19583" stop="19638"/>
                    <exon start="20363" stop="20471"/>
                    <exon start="21555" stop="21695"/>
                    <exon start="21784" stop="21963"/>
                    <exon start="22989" stop="23072"/>
                    <exon start="23172" stop="23258"/>
                    <exon start="24681" stop="24725"/>
                    <exon start="26768" stop="26846"/>
                    <exon start="28902" stop="28971"/>
                    <exon start="29187" stop="29271"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1326</number_coding_nucleotides>
                  <number_encoded_amino_acids>442</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYFEDVDRTWETFEKTLWAHIANFSKLAKDSPQTLVRAIRVVEMQEILDQQLAEEAAEAEGGGAMASVANPRRNAKKTTSSKNLTQQKLKAQGKGYKDKCYESIRKSVEARFDKLLDEQDLKTAIEEARVIGEELGEIYDYVAPCFPPRYEVFQLMVNLYTERFVQWLRKMSDQASNMTNIEILKVTGWVVDYQESLIELGVDDSLAQVCSESGAMDPLMNAYVERMQATTKKWYLNILEADKVQPPKKTDDGKLYTPAAVDLFRILGEQVQIVRENSTDVMLYRIALALIQVMIDFQAAERKRLEEPASEIGLESLCAMINNNLRCYDLAMELSSSTLEALPQNYAEQVNFEDTCKGFLEVAKEAVHQTVSVIFEDPGVEELLVKLYQKDWLEGQVTEFLVATFGDYFTDVKMYIEERSFRRFVEACLEESVVVYVDHLLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 7 chains have been computed
$ 
$ memory statistics:
$ 3792 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 1896 bytes was the average size of a spliced alignment
$ 5944 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5944 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 7 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 11:42:37
-->
