<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:23:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409684" ref_strand="+" ref_description="SGN-E409684 [PPI-14-F2]">
      <seq>cctcgtgccgattaaaaccccatcaacccctactccccttttcttgattccaaattttcaatcacaaaagcaacaacaacaacaatcatatctattaacaaaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccgctgcatccgccaaggtggcagctgccccagctgccagattgaccgtgaaggcttctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagtaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaatacattcaagaacaatgcanggttcccacacaacgtcgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2099" stop="3120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2388" g_stop="2820" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E409684" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2388" e_stop="2820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAG---CAACAACAAGAAGCATAT-TAATAA-ACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATT</genome_strand>
        <mrna_strand>CCTCGT-GCCGATTAAAACCCCATCAACCCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAACAACAATCATATCTATTAACAAAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGCTGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGACCGTGAAGGCTTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGTAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAA-TACATTCAAGAACAATGCANGGTTCCCACACAACGTCGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693134" ref_strand="+" ref_description="SGN-E693134 [LH_Ea10I12]">
      <seq>ctcacatattaaaaccccatcaactcctactccccttttcttgattccaaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcacaggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgaccgtgaaggcgtctttgaaagatgccggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaacgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaatttttttcacctctctcttatgtgaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2092" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2392" g_stop="3176" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="785" r_length="785" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E693134" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2392" e_stop="3176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGT</genome_strand>
        <mrna_strand>CTCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACAGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGCCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAACGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAATTTTTTTCACCTCTCTCTTATGTGAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696974" ref_strand="+" ref_description="SGN-E696974 [LH_Ea10I12](-)">
      <seq>ctcacatattaaaaccccatcaactcctactccccttttcttgattccaaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcacaggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgaccgtgaaggcgtctttgaaagatgccggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaacgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaatttttttcacctctctcttatgtgaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctatggttgaggtgtaatgaaaactcaggaaattaaacttaaaggttatccatgtaatgtcattttggattaataccagcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2092" stop="3463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2392" g_stop="3163" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E696974" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2392" e_stop="3163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTT</genome_strand>
        <mrna_strand>CTCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACAGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGCCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAACGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAATTTTTTTCACCTCTCTCTTATGTGAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTATGGTTGAGGTGTAATGAAAACTCAGGAAATTAAACTTAAAGGT-TATCCATGTAATGTCATTTTG-GATTAATACCAGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459037" ref_strand="+" ref_description="SGN-E459037 [cPRO-33-K21]">
      <seq>ctcacatattaaaaccccatcaaccctactccccttttcttgattccaatttttcattcacaaaagcaacaacaacaacaatcatacctattaacaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccggcgcatccgccaaggtggcagctgccccggctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcangaaattaaagttgcatatttatccatgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2092" stop="3434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2392" g_stop="3122" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E459037" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2392" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAG---CAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>CTCACATATTAAAACCCCATCAAC-CCTACTCCCCTTTTCTTGATTCCAATTTTTCATTCACAAAAGCAACAACAACAACAATCATACCTATTAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCANGAAATTAAAGTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344780" ref_strand="+" ref_description="SGN-E344780 [cTOF-21-D20]">
      <seq>tcacatattaaaaccccatcaactcctactccccttttcttgattccaaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttccacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcangaaattaaagttgcatatgtatccatgtaatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2093" stop="3439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2393" g_stop="3139" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E344780" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2393" e_stop="3139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCA</genome_strand>
        <mrna_strand>TCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTC-CACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCANGAAATTAAAGTTGCATATGTATCCATGTAATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203398" ref_strand="+" ref_description="SGN-E203398 [cLEB-3-H14]">
      <seq>gcacgagttaaaaccccatcaactcctactccccttttcttgattccaaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaagagagacatacagtgtcactttgagtgagaaaggaacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2100" stop="3238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2393" g_stop="2938" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E203398" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2393" e_stop="2938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTAC</genome_strand>
        <mrna_strand>GCACGAGTTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAAGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277144" ref_strand="+" ref_description="SGN-E277144 [cLEL-3-I16](-)">
      <seq>acgttgtgtggaacccctgcattgttcttgaatgtaattttctcaccagcactaacgctgaagttcccaggaataaaagctagactcccatcatcaccaccaagcaacacttcaagtgccatggcattgctagcaagcatcgcgctaacagcggtggcagcaaccacagcaccgacatctttcaaagacgccttcacagtcaatctggcaactggggcagctgccaccttagcggatgcaccggtgctaactctggaagatgatgaagcaccagccttaaggccagtgaaagatggaatagcaacagcagcagaggtaacagtggccattgtttattaatatgcttcttgttgttgcttttgtgattgaaaatttggaatcaagaaaaggggagtaggagttgatggggttttaactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="3114" stop="2100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2814" g_stop="2393" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E277144" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2814" e_stop="2393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTGTGTGGGAACCCTGCATTGTTCTTGAATGTAATTTTCTCACCAGCACTAACGCTGAAGTTCCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGCCATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACAGCACCGACATCTTTCAAAGACGCCTTCACAGTCAATCTGGCAACTGGGGCAGCTGCCACCTTAGCGGATGCACCGGTGCTAACTCTGGAAGATGATGAAGCACCAGCCTTAAGGCCAGTGAAAGATGGAATAGCAACAGCAGCAGAGGTAACAGTGGCCATTGTTTATTAATATGCTTCTTGTTGTTGCTTTTGTGATTGAAAATTTGGAATCAAGAAAAGGGGAGTAGGAGTTGATGGGGTTTTAATATGTGA</genome_strand>
        <mrna_strand>ACGTTGTGTGGAACCCCTGCATTGTTCTTGAATGTAATTTTCTCACCAGCACTAACGCTGAAGTTCCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGCCATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACAGCACCGACATCTTTCAAAGACGCCTTCACAGTCAATCTGGCAACTGGGGCAGCTGCCACCTTAGCGGATGCACCGGTGCTAACTCTGGAAGATGATGAAGCACCAGCCTTAAGGCCAGTGAAAGATGGAATAGCAACAGCAGCAGAGGTAACAGTGGCCATTGTTTATTAATATGCTTCTTGTTGTTGCTTTTGTGATTGAAAATTTGGAATCAAGAAAAGGGGAGTAGGAGTTGATGGGGTTTTAACTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202791" ref_strand="+" ref_description="SGN-E202791 [cLEB-1-A15]">
      <seq>gcacgagtaaaaccccatcaactcctactccccttttcttgattccaaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2099" stop="2861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2393" g_stop="2561" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E202791" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2393" e_stop="2561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCA</genome_strand>
        <mrna_strand>GCAC-GAGTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401715" ref_strand="+" ref_description="SGN-E401715 [PPC-5-G23]">
      <seq>cacatattaaaaccccatcaacccctactccccttttcttgattccaaattttcaatcacaaaagcaacaacaacaacaatcatatctattaacaaaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccgctgcatccgccaaggtggcagctgccccagctgccagattgaccgtgaaggcttctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagtaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaagatcttctgaatgcagcaggagagacatatagtgtcactttgagtgagaaaggacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagtactgttaactgattttctcacctctctgttatgaaaaattgatttgagtcccatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2094" stop="3345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2394" g_stop="3045" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E401715" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2394" e_stop="3045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGA---AGCATAT-TAATAA-ACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCA</genome_strand>
        <mrna_strand>CACATATTAAAACCCCATCAACCCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAACAACAATCATATCTATTAACAAAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGCTGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGACCGTGAAGGCTTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGTAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAAGATCTTCTGAATGCAGCAGGAGAGACATATAGTGTCACTTTGAGTGAGAAAGG-ACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAG-TACTGTTAACTGA-TTTTCTCACCTCTCTGTTATG-AAAAATTGATTTGAG-TCCCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725581" ref_strand="+" ref_description="SGN-E725581 [LA04AE07]">
      <seq>cacatattaaaaccccatcaactcctactccccttttcttgattccaaattttcaatcacaaaagcaacaacgagaagcatataaataaacaatggccactgttacctctgctgctgtggctattgcatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggggcatccactaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattgctgggaacttcagcgttagtgctggtgagacaattacattcaagatcaatgcagggtacccacacaacgtcgtatttgatgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2094" stop="3129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2394" g_stop="2829" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E725581" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2394" e_stop="2829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGA</genome_strand>
        <mrna_strand>CACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACGAGAAGCATATAAATAAACAATGGCCACTGTTACCTCTGCTGCTGTGGCTATTGCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGGGCATCCACTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTGCTGGGAACTTCAGCGTTAGTGCTGGTGAGACAATTACATTCAAGATCAATGCAGGGTACCCACACAACGTCGTATTTGATGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612529" ref_strand="+" ref_description="SGN-E612529 [62293]">
      <seq>attaaaaccccatcaacccctactccccttttcttgattccaaattttcaatcacaaaagcaacaacaacaacaatcatatctattaacaaaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccgctgcatccgccaaggtggcagctgccccagctgccagattgaccgtgaaggcttctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagtaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatatagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttcggcaaagttactgttaactgattttctcacctctctgttatgtaaaagttgatttgagttcccatcaattttcaacattttcggttttagtattgcccttctctttttgaggtgtaattgaaaactcagggaaattcaagttgcctatttatccatgtaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2099" stop="3437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2399" g_stop="3137" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E612529" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2399" e_stop="3137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAG---CAACAACAAGAAGCATAT-TAATAA-ACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTT-GGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAA-TTTCAACATTTTC-CTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAA-TGAAAACTCA-GGAAATTAAAGTTGCATATGTATCCATGTAATGT</genome_strand>
        <mrna_strand>ATTAAAACCCCATCAACCCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAACAACAATCATATCTATTAACAAAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGCTGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGACCGTGAAGGCTTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGTAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATATAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTCGGCAAAGTTACTGTTAACTGA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTTCAACATTTTCGGTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATTGAAAACTCAGGGAAATTCAAGTTGCCTATTTATCCATGTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716003" ref_strand="+" ref_description="SGN-E716003 [FB15DD11]">
      <seq>taaaaccccatcaactcctactccccttttcttgattccaaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2101" stop="3470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2401" g_stop="3170" g_length="770"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E716003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2401" e_stop="3170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTG</genome_strand>
        <mrna_strand>TAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717987" ref_strand="+" ref_description="SGN-E717987 [FC03BC11]">
      <seq>aaaaccccatcaactcctactcccgcttttcttgattccaaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccaaagttagcaccggtgcatccgctaaggtggcagctgccccagttgccaaattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaaaatgaaatcccagctggtgtgaatgctagtaaaatttccatgtctgaaaaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccaggaagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttcctttaagtattgcccttctctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2102" stop="3383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2402" g_stop="3083" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E717987" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2402" e_stop="3083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCCATCAACTCCTACTCCC-CTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTT</genome_strand>
        <mrna_strand>AAAACCCCATCAACTCCTACTCCCGCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAAAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAAATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAAATGAAATCCCAGCTGGTGTGAATGCTAGTAAAATTTCCATGTCTGAAAAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGAAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTAAGTATTGCCCTTCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249687" ref_strand="+" ref_description="SGN-E249687 [cLEF-56-P7]">
      <seq>aaaccccatcaactcctactccccttttcttgattccaaattttcaatggcaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2103" stop="2981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2403" g_stop="2681" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E249687" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2403" e_stop="2681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTG</genome_strand>
        <mrna_strand>AAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATGGCAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740814" ref_strand="+" ref_description="SGN-E740814 [LC23AB01]">
      <seq>ccctatcaactcctactccccttttcttgattccaaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2107" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2406" g_stop="3172" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="768" polyA_stop="778"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E740814" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2406" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CCCTATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739700" ref_strand="+" ref_description="SGN-E739700 [LC18CB04]">
      <seq>cccatcaactcctactccccttttcttgattccaaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2107" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2407" g_stop="3172" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="767" polyA_stop="777"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E739700" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2407" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740708" ref_strand="+" ref_description="SGN-E740708 [LC22CC04]">
      <seq>cccatcaactcctactccccttttcttgattccaaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2107" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2407" g_stop="3172" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="767" polyA_stop="777"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E740708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2407" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346240" ref_strand="+" ref_description="SGN-E346240 [cTOF-23-G14]">
      <seq>atcaactcctactccccttttcttgattccaaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2110" stop="3377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2410" g_stop="3077" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E346240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2410" e_stop="3077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTC</genome_strand>
        <mrna_strand>ATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290086" ref_strand="+" ref_description="SGN-E290086 [cLET-5-D13]">
      <seq>aactcctactccccttttcttgattccaaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2113" stop="3126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2413" g_stop="2826" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E290086" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2413" e_stop="2826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGA</genome_strand>
        <mrna_strand>AACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613057" ref_strand="+" ref_description="SGN-E613057 [62827]">
      <seq>ctccccttttcttgattccaatttttcaatcacaaaagcaacaacaacaacaatcatacctattaacaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccggcgcatccgccaaggtggcagctgccccggctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaatgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgacgtgagaaaggaacttacactttctactgtgcacctcaccagggnagctggaatggttggcaaaaggttactgtttaactaatttttctcacctctctggttatgtaaaacgttgattggagtccccatcaatttcaaaccatttctccttttaagtattggcctttctctttggaggtgtatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2121" stop="3396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2421" g_stop="3091" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E613057" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2421" e_stop="3091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGC---AACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGA-GTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGG-AGCTGGAATGGTTGGC-AAA-GTTACTG-TCAACTAATTTTTTTCACACCTCT-GTTTTGTAAAA-GTTGATTTGAGTTCCCATCAATTTC-AA-CATTT-TCCTTTT-AGTATTGCCCTTCTCTTTTTGAGGTGT</genome_strand>
        <mrna_strand>CTCCCCTTTTCTTGATTCCAATTTTTCAATCACAAAAGCAACAACAACAACAATCATACCTATTAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAATGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGACGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGNAGCTGGAATGGTTGGCAAAAGGTTACTGTTTAACTAATTTTTCTCACCTCTCTGGTTATGTAAAACGTTGATTGGAGTCCCCATCAATTTCAAACCATTTCTCCTTTTAAGTATTGGCCTTTCTCTTTGGAGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717688" ref_strand="+" ref_description="SGN-E717688 [FC02BG12]">
      <seq>ggattccaaattttcacccataaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccaaagttagcaccggtgcatccgctaaggtggcagctgccccagttgccaaattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctaccaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcaacgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaananaaaaaaaaanaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2134" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2433" g_stop="3172" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="747" polyA_stop="771"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E717688" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2433" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GGATTCCAAATTTTCACCCATAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAAAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAAATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTACCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAACGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577969" ref_strand="+" ref_description="SGN-E577969 [LE08CC01]">
      <seq>ttttatggtcaaaaagaagataggattccaaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcangaaaataaagttgcatatgtatccatgtaatgtcattttgtgattaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2134" stop="3453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2434" g_stop="3158" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="748" r_length="725" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E577969" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2434" e_stop="3158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGC</genome_strand>
        <mrna_strand>GATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCANGAAAATAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739212" ref_strand="+" ref_description="SGN-E739212 [LC16CC02]">
      <seq>attccaaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaatgttgcttttgtaacatcaaaaagttcaaccttcctcctgatggtaaaataacatacccgtttcagttgcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2135" stop="3548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2435" g_stop="3248" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="814" r_length="814" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="815" polyA_stop="830"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E739212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2435" e_stop="3248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATGGTAAAATAACATACCCGTTTCAGTTGCTTAAA</genome_strand>
        <mrna_strand>ATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATGGTAAAATAACATACCCGTTTCAGTTGCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714882" ref_strand="+" ref_description="SGN-E714882 [FB12CH02]">
      <seq>caaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctcaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2139" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2439" g_stop="3176" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E714882" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2439" e_stop="3176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGT</genome_strand>
        <mrna_strand>CAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTCAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285836" ref_strand="+" ref_description="SGN-E285836 [cLES-5-B22]">
      <seq>aaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccaaggagctggaatggttggcaaagttactgtcaactaatttttttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2140" stop="3309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2440" g_stop="3009" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E285836" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2440" e_stop="3009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACA</genome_strand>
        <mrna_strand>AAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAAGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281159" ref_strand="+" ref_description="SGN-E281159 [cLER-7-B10]">
      <seq>aaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagcgttgcttggtggagatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcatggttgccacacaacgtcgtatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2140" stop="3124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2440" g_stop="2824" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E281159" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2440" e_stop="2824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGAT</genome_strand>
        <mrna_strand>AAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGCGTTGCTTGGTGGAGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCATGGTTGCCACACAACGTCGTATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344720" ref_strand="+" ref_description="SGN-E344720 [cTOF-21-G18]">
      <seq>ttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaatccagcttttttggactgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2145" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2445" g_stop="3172" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="727" polyA_stop="742"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E344720" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2445" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>TTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTT-ACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAAT-CCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282269" ref_strand="+" ref_description="SGN-E282269 [cLES-4-M8]">
      <seq>ttcaatcacaaaagcaacaacacgaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2145" stop="3305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2445" g_stop="3006" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E282269" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2445" e_stop="3006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTC</genome_strand>
        <mrna_strand>TTCAATCACAAAAGCAACAACACGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267387" ref_strand="+" ref_description="SGN-E267387 [cLEI-8-G23]">
      <seq>ttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactatgagtgagaaaggaacttacactntctactgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2145" stop="3253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2445" g_stop="2953" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E267387" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2445" e_stop="2953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCA</genome_strand>
        <mrna_strand>TTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTATGAGTGAGAAAGGAACTTACACTNTCTACTGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696086" ref_strand="+" ref_description="SGN-E696086 [LH_Ea08D12](-)">
      <seq>aaaaatagataaaataattaacaaaaatgcctttgaacccatttcaatactacaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcacaggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgaccgtgaaggcgtctttgaaagatgccggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaacgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttttactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaatttttttcacctctctcttatgtgaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcaatgggtgattaataccagctttttggactgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2145" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2447" g_stop="3169" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="774" r_length="722" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="776" polyA_stop="794"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E696086" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2447" e_stop="3169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACT</genome_strand>
        <mrna_strand>CAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACAGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGCCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAACGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTTTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAATTTTTTTCACCTCTCTCTTATGTGAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCAATGGGTGATTAATACCAGC-TTTTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539202" ref_strand="+" ref_description="SGN-E539202 [TUS-58-N12](-)">
      <seq>agcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2149" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2449" g_stop="3169" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="723" polyA_stop="732"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E539202" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2449" e_stop="3169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACT</genome_strand>
        <mrna_strand>AGCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292493" ref_strand="+" ref_description="SGN-E292493 [cLET-16-B24]">
      <seq>atcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgctagtgctggtgagaaaataacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2149" stop="3154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2449" g_stop="2854" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E292493" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2449" e_stop="2854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCT</genome_strand>
        <mrna_strand>ATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGCTAGTGCTGGTGAGAAAATAACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732109" ref_strand="+" ref_description="SGN-E732109 [LB01BC01]">
      <seq>ccacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttannaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2151" stop="3365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2450" g_stop="3065" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="619" polyA_stop="632"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E732109" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2450" e_stop="3065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTA</genome_strand>
        <mrna_strand>CCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400889" ref_strand="+" ref_description="SGN-E400889 [PPC-2-O2]">
      <seq>taacgcaacaacaacaacaatcatacctattaacaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccgctgcatccgccaaggtggcagctgccccagctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcaatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2179" stop="3094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2450" g_stop="2794" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E400889" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2450" e_stop="2794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAAT</genome_strand>
        <mrna_strand>TAACGCAA-CAACAACAACAATCATACCTATTAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGCTGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCAATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457444" ref_strand="+" ref_description="SGN-E457444 [cPRO-2-B4]">
      <seq>aaaagcaacaacaacaacaatcatacctattaacaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccggcgcatccgccaaggtggcagctgccccggctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcangaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggactgtaatattgctttttgtacatcaaaaaagtcaaccttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2179" stop="3506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2451" g_stop="3211" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="760" r_length="760" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E457444" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2451" e_stop="3211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCC</genome_strand>
        <mrna_strand>AAAAGCAACAACAACAACAATCATACCTATTAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCANGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATATTGCTTTTTGTACATCAAAAAAGTCAACCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714150" ref_strand="+" ref_description="SGN-E714150 [FB10CF07]">
      <seq>cactaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2151" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2451" g_stop="3172" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="723" polyA_stop="733"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E714150" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2451" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CACTAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733639" ref_strand="+" ref_description="SGN-E733639 [LB10CC01]">
      <seq>cataaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2151" stop="3434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2451" g_stop="3122" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="683" polyA_stop="695"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E733639" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2451" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>CATAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463506" ref_strand="+" ref_description="SGN-E463506 [cPRO-14-J10]">
      <seq>aaaagcaacaacaacaacaatcatacctattaacaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccggcgcatccgccaaggtggcagctgccccggctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2179" stop="3084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2451" g_stop="2784" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E463506" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2451" e_stop="2784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATT</genome_strand>
        <mrna_strand>AAAAGCAACAACAACAACAATCATACCTATTAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290670" ref_strand="+" ref_description="SGN-E290670 [cLET-10-I7]">
      <seq>acaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcangaaattaaagttgcatatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2152" stop="3426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2452" g_stop="3126" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E290670" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2452" e_stop="3126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTAT</genome_strand>
        <mrna_strand>ACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCANGAAATTAAAGTTGCATATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299034" ref_strand="+" ref_description="SGN-E299034 [cLET-42-H16]">
      <seq>acaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgaattgagttcccatcaatttcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2152" stop="3355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2452" g_stop="3055" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E299034" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2452" e_stop="3055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACAT</genome_strand>
        <mrna_strand>ACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGAATTGAGTTCCCATCAATTTCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289455" ref_strand="+" ref_description="SGN-E289455 [cLET-3-F20]">
      <seq>acaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2152" stop="3192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2452" g_stop="2892" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E289455" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2452" e_stop="2892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGC</genome_strand>
        <mrna_strand>ACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727210" ref_strand="+" ref_description="SGN-E727210 [LA14AC02]">
      <seq>caaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2153" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2453" g_stop="3172" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E727210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2453" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734452" ref_strand="+" ref_description="SGN-E734452 [LB12CH01]">
      <seq>caaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2153" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2453" g_stop="3172" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="730"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E734452" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2453" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732990" ref_strand="+" ref_description="SGN-E732990 [LB03CG03]">
      <seq>cataagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2153" stop="3421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2453" g_stop="3122" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E732990" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2453" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>CATAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738727" ref_strand="+" ref_description="SGN-E738727 [LC14DB01]">
      <seq>cataagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttganaaanaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2153" stop="3421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2453" g_stop="3117" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="690"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E738727" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2453" e_stop="3117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTG</genome_strand>
        <mrna_strand>CATAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730719" ref_strand="+" ref_description="SGN-E730719 [LA24DH08]">
      <seq>caatgcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgccatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2155" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2454" g_stop="3172" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="731"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E730719" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2454" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CAATGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGCCATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402400" ref_strand="+" ref_description="SGN-E402400 [PPC-7-J19]">
      <seq>agcaacaacaacaacaatcatacctattaacaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccgctgcatccgccaaggtggcagctgccccagctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcaatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttctacattttccttttagtattgcccttatctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattataccagcttttttggactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2179" stop="3470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2454" g_stop="3170" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E402400" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2454" e_stop="3170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTG</genome_strand>
        <mrna_strand>AGCAACAACAACAACAATCATACCTATTAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGCTGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCAATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCTACATTTTCCTTTTAGTATTGCCCTTATCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATT-ATACCAGCTTTTTTGGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729589" ref_strand="+" ref_description="SGN-E729589 [LA21CA10]">
      <seq>aaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtannaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2155" stop="3472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2455" g_stop="3174" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="736"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E729589" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2455" e_stop="3174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAAT</genome_strand>
        <mrna_strand>AAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740722" ref_strand="+" ref_description="SGN-E740722 [LC22CD12]">
      <seq>caatcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2156" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2455" g_stop="3172" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="719" polyA_stop="734"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E740722" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2455" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CAATCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732711" ref_strand="+" ref_description="SGN-E732711 [LB02DF12]">
      <seq>aaatcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaaaaaaaaacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2155" stop="3434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2455" g_stop="3122" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="701"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E732711" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2455" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>AAATCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714037" ref_strand="+" ref_description="SGN-E714037 [FB10BD05]">
      <seq>aatctcaacaagaagcatattaataaacaatggccactgttacctctgctgctggtgctattccatctttcactggccttaaagctggtgcttcatcatcttccagagatagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttatcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctaacttttattcctgggaacttcatcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcttatttgatgaagatgaaatcccagctggtgaggatgctagtaagatttccatgtcagaagaggatcttctgaatgcagcatgagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2162" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2456" g_stop="3172" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="717" polyA_stop="727"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E714037" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2456" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>AATC-TCAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGGTGCTATTCCATCTTTCACTGGCCTTAAAGCTGGTGCTTCATCATCTTCCAGAGATAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTATCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAACTTTTATTCCTGGGAACTTCATCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCTTATTTGATGAAGATGAAATCCCAGCTGGTGAGGATGCTAGTAAGATTTCCATGTCAGAAGAGGATCTTCTGAATGCAGCATGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715028" ref_strand="+" ref_description="SGN-E715028 [FB13AE05]">
      <seq>aagctacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2156" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2456" g_stop="3172" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="718" polyA_stop="728"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E715028" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2456" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>AAGCTACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737605" ref_strand="+" ref_description="SGN-E737605 [LC10CB06]">
      <seq>aagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2156" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2456" g_stop="3172" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="718" polyA_stop="733"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E737605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2456" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>AAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463129" ref_strand="+" ref_description="SGN-E463129 [cPRO-13-N19]">
      <seq>caacaacaacaacaatcatatctattaacaaaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccgctgcatccgccaaggtggcagctgccccagctgccagattgaccgtgaaggcttctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagtaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatatagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactgattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttcaacattttcgttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2156" stop="3434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2456" g_stop="3122" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="688"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E463129" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2456" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAACAACAAGAAGCATAT-TAATAA-ACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>CAACAACAACAACAATCATATCTATTAACAAAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGCTGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGACCGTGAAGGCTTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGTAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATATAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTGA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCGTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476111" ref_strand="+" ref_description="SGN-E476111 [cSTB-43-I18]">
      <seq>caacaacaacaacaatcatacctattaacaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccggcgcatccgccaaggtggcagctgccccggctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcatgagagacatacagtgtcactttgagtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2179" stop="3226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2456" g_stop="2926" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E476111" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2456" e_stop="2926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAG</genome_strand>
        <mrna_strand>CAACAACAACAACAATCATACCTATTAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCATGAGAGACATACAGTGTCACTTTGAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740867" ref_strand="+" ref_description="SGN-E740867 [LC23AH12]">
      <seq>cgctacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2158" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2457" g_stop="3172" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E740867" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2457" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CGCTACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738030" ref_strand="+" ref_description="SGN-E738030 [LC12AD07]">
      <seq>gcatcaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2158" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2458" g_stop="3172" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E738030" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2458" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GCATCAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734206" ref_strand="+" ref_description="SGN-E734206 [LB12AC05]">
      <seq>gcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2158" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2458" g_stop="3172" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="716" polyA_stop="728"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E734206" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2458" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737653" ref_strand="+" ref_description="SGN-E737653 [LC10CH07]">
      <seq>gcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2158" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2458" g_stop="3172" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E737653" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2458" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732481" ref_strand="+" ref_description="SGN-E732481 [LB02BB09]">
      <seq>gcatcaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2158" stop="3423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2458" g_stop="3122" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E732481" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2458" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>GCATCAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733227" ref_strand="+" ref_description="SGN-E733227 [LB04BC07]">
      <seq>catcaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaatgttgcttttgtaacatcaaaaagttcaaccttcctcctgatggtaaaataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2159" stop="3529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2459" g_stop="3216" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="761" polyA_stop="781"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E733227" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2459" e_stop="3216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATG</genome_strand>
        <mrna_strand>CATCAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739485" ref_strand="+" ref_description="SGN-E739485 [LC17CF08]">
      <seq>catcaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2159" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2459" g_stop="3172" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="715" polyA_stop="730"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E739485" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2459" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CATCAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735873" ref_strand="+" ref_description="SGN-E735873 [LC03BH08]">
      <seq>ctacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2159" stop="3434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2459" g_stop="3122" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="693"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E735873" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2459" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>CTACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739188" ref_strand="+" ref_description="SGN-E739188 [LC16BH04]">
      <seq>caataacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2159" stop="3434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2459" g_stop="3122" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="693"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E739188" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2459" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>CAATAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736182" ref_strand="+" ref_description="SGN-E736182 [LC04CF08]">
      <seq>caacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2159" stop="3434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2459" g_stop="3122" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="693"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E736182" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2459" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>CAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283268" ref_strand="+" ref_description="SGN-E283268 [cLER-12-M1]">
      <seq>aacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctactaagatttccatgtctgaagaggatcttctgaatgcagcacgagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccacggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2160" stop="3334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2460" g_stop="3034" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E283268" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2460" e_stop="3034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTG</genome_strand>
        <mrna_strand>AACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTACTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCACGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCACGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283463" ref_strand="+" ref_description="SGN-E283463 [cLER-12-B14]">
      <seq>aacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2160" stop="3324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2460" g_stop="3024" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E283463" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2460" e_stop="3024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAA</genome_strand>
        <mrna_strand>AACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288419" ref_strand="+" ref_description="SGN-E288419 [cLES-16-P13]">
      <seq>aacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgctagtgctggtgagaaaattacattcaagaacaatgcacggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcatgagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccaaggagcttgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2160" stop="3274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2460" g_stop="2974" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E288419" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2460" e_stop="2974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATG</genome_strand>
        <mrna_strand>AACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGCTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCACGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCATGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAAGGAGCTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287964" ref_strand="+" ref_description="SGN-E287964 [cLES-7-A24]">
      <seq>aacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagattttcatgtctgaagaggatcttctgaatgcagcacgagagacatacagtgtcactttgagtgagaaaagaacttacactttctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2160" stop="3248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2460" g_stop="2948" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E287964" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2460" e_stop="2948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACT</genome_strand>
        <mrna_strand>AACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTTCATGTCTGAAGAGGATCTTCTGAATGCAGCACGAGAGACATACAGTGTCACTTTGAGTGAGAAAAGAACTTACACTTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284532" ref_strand="+" ref_description="SGN-E284532 [cLES-3-M22]">
      <seq>aacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2160" stop="3162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2460" g_stop="2862" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E284532" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2460" e_stop="2862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGAT</genome_strand>
        <mrna_strand>AACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288507" ref_strand="+" ref_description="SGN-E288507 [cLES-8-L11]">
      <seq>atcaacaagaagcattttaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagatagactgtgaaggcgtctttgaaagatgtcggtgctgaggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagcgttgcttggcggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2162" stop="3082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2460" g_stop="2782" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E288507" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2460" e_stop="2782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACA</genome_strand>
        <mrna_strand>ATCAACAAGAAGCATTTTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATAGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGAGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGCGTTGCTTGGCGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290578" ref_strand="+" ref_description="SGN-E290578 [cLES-20-H7]">
      <seq>aacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2160" stop="3014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2460" g_stop="2714" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E290578" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2460" e_stop="2714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTG</genome_strand>
        <mrna_strand>AACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289103" ref_strand="+" ref_description="SGN-E289103 [cLES-18-K2]">
      <seq>aacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2160" stop="2995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2460" g_stop="2695" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E289103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2460" e_stop="2695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATG</genome_strand>
        <mrna_strand>AACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290496" ref_strand="+" ref_description="SGN-E290496 [cLES-20-G11]">
      <seq>acaacaagaagcatattaataaacaatggccactgctacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccatattgactgtgaaggcgtctttgaaagatgtccgtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctatcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcatggttgccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2161" stop="3108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2461" g_stop="2808" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E290496" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2461" e_stop="2808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACA</genome_strand>
        <mrna_strand>ACAACAAGAAGCATATTAATAAACAATGGCCACTGCTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCATATTGACTGTGAAGGCGTCTTTGAAAGATGTCCGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTATCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCATGGTTGCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459319" ref_strand="+" ref_description="SGN-E459319 [cPRO-27-B19]">
      <seq>caacaacaatcatacctattaacaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccggcgcatccgccaaggtggcagctgccccggctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaagttgatttgagttcccatcaatttcacattttccttttagtattgcccttctctttttgagtgtaatgaaactcangaaataaaagtgcatatttattcatgtaatggcattttgtgaataataccagctttttggactgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2179" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2462" g_stop="3172" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="706" polyA_stop="720"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E459319" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2462" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CAACAACAATCATACCTATTAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAGTTGATTTGAGTTCCCATCAATTTC-ACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGA-GTGTAATG-AAACTCANGAAATAAAAG-TGCATATTTATTCATGTAATGGCATTTTGTGAATAATACCAGC-TTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459296" ref_strand="+" ref_description="SGN-E459296 [cPRO-27-M12]">
      <seq>caacaacaatcatacctattaacaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccggcgcatccgccaaggtggcagctgccccggctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcaccgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaagatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggatggcaaagttactgttaactaattatctcacctctctgttgtgtaaaagtcgatttgagttcccatcaatttcgacattttccttttagtattgcgcttctctttttgaggtgtaatgaagactcaggaaattaaagtgcatatttatccatgtaatgncatattgtgattaataccagcttgtttggactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2179" stop="3470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2462" g_stop="3170" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E459296" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2462" e_stop="3170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTG</genome_strand>
        <mrna_strand>CAACAACAATCATACCTATTAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCACCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAAGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGATGGCAAAGTTACTGTTAACTAA-TTATCTCACCTCTCTGTTGTGTAAAAGTCGATTTGAGTTCCCATCAATTTCGACATTTTCCTTTTAGTATTGCGCTTCTCTTTTTGAGGTGTAATGAAGACTCAGGAAATTAAAG-TGCATATTTATCCATGTAATGNCATATTGTGATTAATACCAGCTTGTTTGGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733697" ref_strand="+" ref_description="SGN-E733697 [LB10CG12]">
      <seq>catcaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2162" stop="3451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2462" g_stop="3151" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E733697" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2462" e_stop="3151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAA</genome_strand>
        <mrna_strand>CATCAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463184" ref_strand="+" ref_description="SGN-E463184 [cPRO-13-J10]">
      <seq>caacaacaatcatacctattaacaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccggcgcatccgccaaggtggcagctgccccggctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaaactacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgntgtgtaaaaagtgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2179" stop="3334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2462" g_stop="3034" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E463184" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2462" e_stop="3034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTG</genome_strand>
        <mrna_strand>CAACAACAATCATACCTATTAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAAACTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGNTGTGTAAAAAGTGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282523" ref_strand="+" ref_description="SGN-E282523 [cLER-18-B3]">
      <seq>caacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2162" stop="3271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2462" g_stop="2971" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E282523" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2462" e_stop="2971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGA</genome_strand>
        <mrna_strand>CAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733561" ref_strand="+" ref_description="SGN-E733561 [LB10BD07]">
      <seq>aataagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2163" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2463" g_stop="3172" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="711" polyA_stop="722"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E733561" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2463" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>AATAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289315" ref_strand="+" ref_description="SGN-E289315 [cLES-18-P17]">
      <seq>aacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaacgctggtgcttcatcatcttccagagttagcaccggtgcatccgctaatgtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagcgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaacgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctcgtaagatttgcatgtctgaagaggatcttctgaatgcagcacgagagacatacagtgtcactttgagtgagaaaggaacttacactgtctactgtgcacctcaccagggagctggaatggttggcaaagttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2163" stop="3289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2463" g_stop="2989" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E289315" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2463" e_stop="2989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACT</genome_strand>
        <mrna_strand>AACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAACGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAATGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGCGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAACGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTCGTAAGATTTGCATGTCTGAAGAGGATCTTCTGAATGCAGCACGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTGTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290539" ref_strand="+" ref_description="SGN-E290539 [cLES-20-I10]">
      <seq>aacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccaaagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcaacgttagtgctggtgagaaaattacattcaagaacaatgcaaggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2163" stop="3154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2463" g_stop="2854" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E290539" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2463" e_stop="2854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCT</genome_strand>
        <mrna_strand>AACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAAAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAACGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAAGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279738" ref_strand="+" ref_description="SGN-E279738 [cLER-5-J18]">
      <seq>aacatgaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagatgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2163" stop="3027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2463" g_stop="2727" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E279738" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2463" e_stop="2727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGG</genome_strand>
        <mrna_strand>AACATGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGATGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575470" ref_strand="+" ref_description="SGN-E575470 [35099]">
      <seq>caacaatcatatctattaacaaaatggccactgttacctctgctgctgttgcgtatgccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccgctgcatccgccaaggtggcagctgccccagctgccagattgaccgtgaaggcttctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagtaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatatagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactgattttctcacctctctgttatgtaaaagtcgatttgagttcccatcaatttcaacattttcgttttagtattgcccttctctttttgaggtgtaatgaaaactcagcgaaattacagttgcatatttatccatgtaatgtcactttgtgattaatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2165" stop="3455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2465" g_stop="3155" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E575470" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2465" e_stop="3155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGCATAT-TAATAA-ACAATGGCCACTGTTACCTCTGCTGCTGTTGC-TATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAG-GAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACC</genome_strand>
        <mrna_strand>CAACAATCATATCTATTAACAAAATGGCCACTGTTACCTCTGCTGCTGTTGCGTATGCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGCTGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGACCGTGAAGGCTTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGTAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATATAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTGA-TTTTCTCACCTCTCTGTTATGTAAAAGTCGATTTGAGTTCCCATCAATTTCAACATTTTCGTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGCGAAATTACAGTTGCATATTTATCCATGTAATGTCACTTTGTGATTAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456983" ref_strand="+" ref_description="SGN-E456983 [cPRO-2-C13]">
      <seq>caacaatcatacctattaacaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccggcgcatccgccaaggtggcagctgccccggctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2179" stop="3429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2465" g_stop="3122" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="664" polyA_stop="673"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E456983" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2465" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>CAACAATCATACCTATTAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284883" ref_strand="+" ref_description="SGN-E284883 [cLER-19-F23]">
      <seq>tttttttgatacatatgcaactttaatttcctgagttttcattacacctcaaaaagagaagggcaatactaaaaggaaaatgttgaaattgatgggaactcaaatcaacttttacaaaacagaggtgtgaaaaaaattagttgacagtaactttgccaaccattccagctccctggtgaggtgcacagtagaaagtgtaagttcctttctcactcaaagtgacactgtatgtctctcctgctgcattcagaagatcctcttcagacatggaaatcttactagcatccacaccagctgggatttcatcttcatcaaatacgacgttgtgtgggaaccctgcattgttcttgaatgtaattttctcaccagcactaacgctgaagtttccaggaataaaagctagactcccatcatcaccaccaagcaacacttcaagtgccatggcattgctagcaagcatcgcgctaacagcggtggcagcaaccacagcaccgacatctttcaaagacgccttcacagtcaatctggcaactggggcagctgccaccttagcggatgcaccggtgctaactctggaagatgatgaagcaccagccttaaggccagtgaaagatggaatagcaacagcagcagaggtaacggtggccattgtttattaatatgcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="3429" stop="2166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3134" g_stop="2466" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E284883" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3134" e_stop="2466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATGGATACATATGCAACTTTAATTTCCTGAGTTTTCATTACACCTCAAAAAGAGAAGGGCAATACTAAAAGGAAAATGTTGAAATTGATGGGAACTCAAATCAACTTTTACAAAACAGAGGTGTGAAAAAAATTAGTTGACAGTAACTTTGCCAACCATTCCAGCTCCCTGGTGAGGTGCACAGTAGAAAGTGTAAGTTCCTTTCTCACTCAAAGTGACACTGTATGTCTCTCCTGCTGCATTCAGAAGATCCTCTTCAGACATGGAAATCTTACTAGCATCCACACCAGCTGGGATTTCATCTTCATCAAATACGACGTTGTGTGGGAACCCTGCATTGTTCTTGAATGTAATTTTCTCACCAGCACTAACGCTGAAGTTCCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGCCATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACAGCACCGACATCTTTCAAAGACGCCTTCACAGTCAATCTGGCAACTGGGGCAGCTGCCACCTTAGCGGATGCACCGGTGCTAACTCTGGAAGATGATGAAGCACCAGCCTTAAGGCCAGTGAAAGATGGAATAGCAACAGCAGCAGAGGTAACAGTGGCCATTGTTTATTAATATGCTTCTT</genome_strand>
        <mrna_strand>TTTTTTTGATACATATGCAACTTTAATTTCCTGAGTTTTCATTACACCTCAAAAAGAGAAGGGCAATACTAAAAGGAAAATGTTGAAATTGATGGGAACTCAAATCAACTTTTACAAAACAGAGGTGTGAAAAAAATTAGTTGACAGTAACTTTGCCAACCATTCCAGCTCCCTGGTGAGGTGCACAGTAGAAAGTGTAAGTTCCTTTCTCACTCAAAGTGACACTGTATGTCTCTCCTGCTGCATTCAGAAGATCCTCTTCAGACATGGAAATCTTACTAGCATCCACACCAGCTGGGATTTCATCTTCATCAAATACGACGTTGTGTGGGAACCCTGCATTGTTCTTGAATGTAATTTTCTCACCAGCACTAACGCTGAAGTTTCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGCCATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACAGCACCGACATCTTTCAAAGACGCCTTCACAGTCAATCTGGCAACTGGGGCAGCTGCCACCTTAGCGGATGCACCGGTGCTAACTCTGGAAGATGATGAAGCACCAGCCTTAAGGCCAGTGAAAGATGGAATAGCAACAGCAGCAGAGGTAACGGTGGCCATTGTTTATTAATATGCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286231" ref_strand="+" ref_description="SGN-E286231 [cLES-11-D11]">
      <seq>aagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2166" stop="3312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2466" g_stop="3012" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E286231" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2466" e_stop="3012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCT</genome_strand>
        <mrna_strand>AAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413848" ref_strand="+" ref_description="SGN-E413848 [STM-18-F5]">
      <seq>aacaatcatacctattaacaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccggcgcatccgccaaggtggcagctgccccggctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcangagagacatacagtgtcactttgagtgagaaaggacttacactttctactgtgcacctcaccagggagctggaatggttgcaaagttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2179" stop="3289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2466" g_stop="2989" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E413848" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2466" e_stop="2989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACT</genome_strand>
        <mrna_strand>AACAATCATACCTATTAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCANGAGAGACATACAGTGTCACTTTGAGTGAGAAAGG-ACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTT-GCAAAGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283370" ref_strand="+" ref_description="SGN-E283370 [cLER-12-A2]">
      <seq>aagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccatattgactgtcaaggccttttcaaaagatgtcggtgctgtggttgctgccaccgttgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagcctagcttttattcctggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2166" stop="3051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2466" g_stop="2751" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E283370" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2466" e_stop="2751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAA</genome_strand>
        <mrna_strand>AAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCATATTGACTGTCAAGGCCTTTTCAAAAGATGTCGGTGCTGTGGTTGCTGCCACCGTTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGCCTAGCTTTTATTCCTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472845" ref_strand="+" ref_description="SGN-E472845 [cSTB-30-G21]">
      <seq>aacaatcatacctattaacaatggccactgttacctctgctgctgctgctattccatctttcactggcctcaaggctggtgcttcctcatcttccatagttagcaccggcgcatccgccaaggtggcagctgccccggctgccagattgaccgcgaaggcgtctttgaaagatatcggtgctgttgttgctgccaccgctgttagcccgatgcttgctatgcaatgccatggcactcgatgtgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2179" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2466" g_stop="2712" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E472845" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2466" e_stop="2712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTA-GCAATGCCATGGCACTTGAAGTGTTGCT</genome_strand>
        <mrna_strand>AACAATCATACCTATTAACAATGGCCACTGTTACCTCTGCTGCTGCTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCATAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACCGCGAAGGCGTCTTTGAAAGATATCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCCCGATGCTTGCTATGCAATGCCATGGCACTCGATGTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342107" ref_strand="+" ref_description="SGN-E342107 [cTOF-10-G23]">
      <seq>aagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcangaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactggtatgttgctttttgtacatcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2169" stop="3495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2469" g_stop="3195" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E342107" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2469" e_stop="3195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAA</genome_strand>
        <mrna_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCANGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGGTATGTTGCTTTTTGTACATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344497" ref_strand="+" ref_description="SGN-E344497 [cTOF-14-L5]">
      <seq>aagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcangaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2169" stop="3463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2469" g_stop="3163" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E344497" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2469" e_stop="3163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTT</genome_strand>
        <mrna_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCANGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321478" ref_strand="+" ref_description="SGN-E321478 [cTOB-23-J5]">
      <seq>aagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2169" stop="3434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2469" g_stop="3122" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="674"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E321478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2469" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347355" ref_strand="+" ref_description="SGN-E347355 [cTOF-33-L9]">
      <seq>aagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2169" stop="3419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2469" g_stop="3119" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E347355" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2469" e_stop="3119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCA</genome_strand>
        <mrna_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320325" ref_strand="+" ref_description="SGN-E320325 [cTOB-21-P16]">
      <seq>aagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcattttcacattttcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2169" stop="3364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2469" g_stop="3064" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E320325" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2469" e_stop="3064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTT</genome_strand>
        <mrna_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCATTTTC-ACATTTTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412100" ref_strand="+" ref_description="SGN-E412100 [STM-15-B14]">
      <seq>aatcgtgcctattaacaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccgctgcatccgccaaggtggcagctgccccagctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcaatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2179" stop="3274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2469" g_stop="2974" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E412100" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2469" e_stop="2974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATG</genome_strand>
        <mrna_strand>AATCGTGCCTATTAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGCTGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCAATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283368" ref_strand="+" ref_description="SGN-E283368 [cLER-12-O17]">
      <seq>aagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgaaaaaggaacttacactttctactgtgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2169" stop="3255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2469" g_stop="2955" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E283368" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2469" e_stop="2955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACC</genome_strand>
        <mrna_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAAAAAGGAACTTACACTTTCTACTGTGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278772" ref_strand="+" ref_description="SGN-E278772 [cLER-2-K24]">
      <seq>aagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2169" stop="3255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2469" g_stop="2955" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E278772" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2469" e_stop="2955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACC</genome_strand>
        <mrna_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281130" ref_strand="+" ref_description="SGN-E281130 [cLER-7-F7]">
      <seq>aagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2169" stop="3229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2469" g_stop="2929" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E281130" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2469" e_stop="2929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAA</genome_strand>
        <mrna_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278628" ref_strand="+" ref_description="SGN-E278628 [cLER-10-L20]">
      <seq>aagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2169" stop="3160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2469" g_stop="2860" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E278628" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2469" e_stop="2860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAG</genome_strand>
        <mrna_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470055" ref_strand="+" ref_description="SGN-E470055 [cSTB-16-H10]">
      <seq>aatcatacctattaacaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccgctgcatccgccaaggtggcagctgccccagctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcaatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2179" stop="3156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2469" g_stop="2856" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E470055" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2469" e_stop="2856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAG</genome_strand>
        <mrna_strand>AATCATACCTATTAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGCTGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCAATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340863" ref_strand="+" ref_description="SGN-E340863 [cTOF-5-J6]">
      <seq>agcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2170" stop="3434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2470" g_stop="3122" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="664" polyA_stop="675"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E340863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2470" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>AGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285204" ref_strand="+" ref_description="SGN-E285204 [cLER-20-L1]">
      <seq>agcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaattttttttacacctctgttttgtaaaagttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2170" stop="3331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2470" g_stop="3031" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E285204" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2470" e_stop="3031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGAT</genome_strand>
        <mrna_strand>AGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTTACACCTCTGTTTTGTAAAAGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410442" ref_strand="+" ref_description="SGN-E410442 [PPI-17-E15]">
      <seq>catacctattaacaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccggcgcatccgccaaggtggcagctgccccggctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaagttgatttgagttcccatcaatttcaacattttcccttttagtattgcccttctctttttgangtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggaactgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2179" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2472" g_stop="3172" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="703" polyA_stop="717"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E410442" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2472" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTT-CCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGG-ACTGTA</genome_strand>
        <mrna_strand>CATACCTATTAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCCTTTTAGTATTGCCCTTCTCTTTTTGANGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGAACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282781" ref_strand="+" ref_description="SGN-E282781 [cLER-15-I17]">
      <seq>catattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccanggagctggaatggttggcaaagttactgtcaactaatttttttcacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2172" stop="3311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2472" g_stop="3011" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E282781" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2472" e_stop="3011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACC</genome_strand>
        <mrna_strand>CATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCANGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281847" ref_strand="+" ref_description="SGN-E281847 [cLES-2-C10]">
      <seq>catattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2172" stop="3192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2472" g_stop="2892" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E281847" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2472" e_stop="2892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGC</genome_strand>
        <mrna_strand>CATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713710" ref_strand="+" ref_description="SGN-E713710 [FB09BG01]">
      <seq>ccattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaggtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacgttcaagaacaatgcagggttcccacacgacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctactaagatttccatgtctcgagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcagcggggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaagagttgacttgagttcccatcaatttccaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2175" stop="3404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2473" g_stop="3104" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E713710" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2473" e_stop="3104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTT-CAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAG</genome_strand>
        <mrna_strand>CCATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAGGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACGTTCAAGAACAATGCAGGGTTCCCACACGACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTACTAAGATTTCCATGTCTCGAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCAGCGGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAGAGTTGACTTGAGTTCCCATCAATTTCCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203359" ref_strand="+" ref_description="SGN-E203359 [cLEB-3-P1]">
      <seq>gcacgagaaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2179" stop="3401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2474" g_stop="3101" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E203359" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2474" e_stop="3101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACT</genome_strand>
        <mrna_strand>GCACGAGAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733933" ref_strand="+" ref_description="SGN-E733933 [LB11BD03]">
      <seq>cccttttaaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctaccaatgccatggcacttgaagtgttgcttggcggtgatgatgggagtctatcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcacggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggagtggatgctaataaaatttccatgtctgaagaggatcttctgaatgcaccaggagagacatacagtgtcactttgactgataaaggaacttacactttctactgtgcacatcaccacggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2180" stop="3319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2474" g_stop="3019" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E733933" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2474" e_stop="3019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTT</genome_strand>
        <mrna_strand>CCCTTTTAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTACCAATGCCATGGCACTTGAAGTGTTGCTTGGCGGTGATGATGGGAGTCTATCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCACGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGAGTGGATGCTAATAAAATTTCCATGTCTGAAGAGGATCTTCTGAATGCACCAGGAGAGACATACAGTGTCACTTTGACTGATAAAGGAACTTACACTTTCTACTGTGCACATCACCACGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288044" ref_strand="+" ref_description="SGN-E288044 [cLES-7-F4]">
      <seq>attaataaacaatggccactgttacctctgctgctgttgctattccatcttgcgctggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttaatattgcccttctctttttgaggtgtaatgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2175" stop="3400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2475" g_stop="3100" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E288044" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2475" e_stop="3100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAAC</genome_strand>
        <mrna_strand>ATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTGCGCTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAATATTGCCCTTCTCTTTTTGAGGTGTAATGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278595" ref_strand="+" ref_description="SGN-E278595 [cLER-10-J11]">
      <seq>ttaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgcctgattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaaggtactgtcaactaatttttttcacacctctgttttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2176" stop="3324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2476" g_stop="3024" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E278595" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2476" e_stop="3024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAA</genome_strand>
        <mrna_strand>TTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCTGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGGTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295690" ref_strand="+" ref_description="SGN-E295690 [cLET-25-F20]">
      <seq>taataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaagctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2177" stop="3138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2477" g_stop="2838" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E295690" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2477" e_stop="2838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCC</genome_strand>
        <mrna_strand>TAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAAGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404693" ref_strand="+" ref_description="SGN-E404693 [PPC-14-P4]">
      <seq>gtaacaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaagctggtgcttcctcatcttccagagttagcaccgctgcatccgccaaggtggcagctgccccagctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcaatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaagagagacatacagtgtcactttgagtgagaaaagaacttacactttctactgtgcacctcaccnaggagctggaatggttggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2182" stop="3282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2480" g_stop="2982" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E404693" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2480" e_stop="2982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAA</genome_strand>
        <mrna_strand>GTAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAAGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGCTGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCAATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAAGAGAGACATACAGTGTCACTTTGAGTGAGAAAAGAACTTACACTTTCTACTGTGCACCTCACCNAGGAGCTGGAATGGTTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732469" ref_strand="+" ref_description="SGN-E732469 [LB02BA08]">
      <seq>aaataatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2181" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2481" g_stop="3176" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E732469" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2481" e_stop="3176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGT</genome_strand>
        <mrna_strand>AAATAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340893" ref_strand="+" ref_description="SGN-E340893 [cTOF-5-E13]">
      <seq>aaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2181" stop="3472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2481" g_stop="3172" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E340893" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2481" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>AAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403152" ref_strand="+" ref_description="SGN-E403152 [PPC-9-D24]">
      <seq>caaaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccgctgcatccgccaaggtggcagctgccccagctgccagattgaccgtgaaggcttctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagtaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatatagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactgattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttcaacattttcgttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaaaaaaaaaaaaaaaaaacttgagactagttcagagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2182" stop="3434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2482" g_stop="3122" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="669"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E403152" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2482" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>CAAAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGCTGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGACCGTGAAGGCTTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGTAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATATAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTGA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCGTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279525" ref_strand="+" ref_description="SGN-E279525 [cLER-5-K16]">
      <seq>caatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2184" stop="3359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2484" g_stop="3059" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E279525" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2484" e_stop="3059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTC</genome_strand>
        <mrna_strand>CAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296885" ref_strand="+" ref_description="SGN-E296885 [cLET-26-E21]">
      <seq>caatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagctagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2184" stop="3321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2484" g_stop="3021" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E296885" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2484" e_stop="3021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGT</genome_strand>
        <mrna_strand>CAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGCTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277625" ref_strand="+" ref_description="SGN-E277625 [cLER-6-I23]">
      <seq>caatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccaaggagctggaatggttggcaaagttactgtcaactaatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2184" stop="3304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2484" g_stop="3004" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E277625" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2484" e_stop="3004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTT</genome_strand>
        <mrna_strand>CAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAAGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296763" ref_strand="+" ref_description="SGN-E296763 [cLET-26-G13]">
      <seq>caatggccactgttacctctgcttctgttgctattccatctttcactggccttgaggctggtgcttcatcatcttccagacccagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgcggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgtagctcggcggtgataatgggagtctatcttttattcctggaaacttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2184" stop="3056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2484" g_stop="2757" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E296763" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2484" e_stop="2757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAG</genome_strand>
        <mrna_strand>CAATGGCCACTGTTACCTCTGCTTCTGTTGCTATTCCATCTTTCACTGGCCTTGAGGCTGGTGCTTCATCATCTTCCAGACCCAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGCGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTAGCTCGGCGGTGATAATGGGAGTCTATCTTTTATTCCTGGAAACTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401562" ref_strand="+" ref_description="SGN-E401562 [PPC-4-J3]">
      <seq>cacaaaagcaacaacaacaacaatcatatctattaacaaaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccgctgcatccgccaaggtggcagctgccccagctgccagattgaccgtgaaggcttctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagtaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatatagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2156" stop="3260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2485" g_stop="2960" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="515" r_length="476" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E401562" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2485" e_stop="2960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACC</genome_strand>
        <mrna_strand>AATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGCTGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGACCGTGAAGGCTTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGTAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATATAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458528" ref_strand="+" ref_description="SGN-E458528 [cPRO-6-C19]">
      <seq>cacaaaagcaacaacaacaacaatcatatctattaacaaaatggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccgctgcatccgccaaggtggcagctgccccagctgccagattgaccgtgaaggcttctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagtaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatatagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2156" stop="3258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2485" g_stop="2958" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="513" r_length="474" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E458528" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2485" e_stop="2958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCA</genome_strand>
        <mrna_strand>AATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGCTGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGACCGTGAAGGCTTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGTAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATATAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277815" ref_strand="+" ref_description="SGN-E277815 [cLEL-5-O19](-)">
      <seq>attgttcttgaatgtaattttctcaccagcactaacgctgaagttcccaggaataaaagctagactcccatcatcaccaccaagcaacacttcaagtgccatggcattgctagcaagcatcgcgctaacagcggtggcagcaaccacagcaccgacatctttcaaagacgccttcacagtcaatctggcaactggggcagctgccaccttagcggatgcaccggtgctaactctggaagatgatgaagcaccagccttaaggccagtgaaagatggaatagcaacagcagcagaggtaacagtggccattgtttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="3094" stop="2179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2794" g_stop="2485" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E277815" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2794" e_stop="2485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTCTTGAATGTAATTTTCTCACCAGCACTAACGCTGAAGTTCCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGCCATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACAGCACCGACATCTTTCAAAGACGCCTTCACAGTCAATCTGGCAACTGGGGCAGCTGCCACCTTAGCGGATGCACCGGTGCTAACTCTGGAAGATGATGAAGCACCAGCCTTAAGGCCAGTGAAAGATGGAATAGCAACAGCAGCAGAGGTAACAGTGGCCATT</genome_strand>
        <mrna_strand>ATTGTTCTTGAATGTAATTTTCTCACCAGCACTAACGCTGAAGTTCCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGCCATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACAGCACCGACATCTTTCAAAGACGCCTTCACAGTCAATCTGGCAACTGGGGCAGCTGCCACCTTAGCGGATGCACCGGTGCTAACTCTGGAAGATGATGAAGCACCAGCCTTAAGGCCAGTGAAAGATGGAATAGCAACAGCAGCAGAGGTAACAGTGGCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280839" ref_strand="+" ref_description="SGN-E280839 [cLEL-6-H22](-)">
      <seq>atgtaattttctcaccagcactaacgctgaagttcccaggaataaaagctagactcccatcatcaccaccaagcaacacttcaagtgccatggcattgctagcaagcatcgcgctaacagcggtggcagcaaccacagcaccgacatctttcaaagacgccttcacagtcaatctggcaactggggcagctgccaccttagcggatgcaccggtgctaactctggaacggagtgaagcaccagccttaaggctcgtgaaagatggaatagcaacagcaaaagaggtaacagtggccctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="3083" stop="2183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2783" g_stop="2485" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E280839" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2783" e_stop="2485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTAATTTTCTCACCAGCACTAACGCTGAAGTTCCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGCCATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACAGCACCGACATCTTTCAAAGACGCCTTCACAGTCAATCTGGCAACTGGGGCAGCTGCCACCTTAGCGGATGCACCGGTGCTAACTCTGGAAGATGATGAAGCACCAGCCTTAAGGCCAGTGAAAGATGGAATAGCAACAGCAGCAGAGGTAACAGTGGCCATT</genome_strand>
        <mrna_strand>ATGTAATTTTCTCACCAGCACTAACGCTGAAGTTCCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGCCATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACAGCACCGACATCTTTCAAAGACGCCTTCACAGTCAATCTGGCAACTGGGGCAGCTGCCACCTTAGCGGATGCACCGGTGCTAACTCTGGAACGGAGTGAAGCACCAGCCTTAAGGCTCGTGAAAGATGGAATAGCAACAGCAAAAGAGGTAACAGTGGCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744832" ref_strand="+" ref_description="SGN-E744832 [GI|19299]">
      <seq>atggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2186" stop="3295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2486" g_stop="2995" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E744832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2486" e_stop="2995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAAC</genome_strand>
        <mrna_strand>ATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409305" ref_strand="+" ref_description="SGN-E409305 [PPI-13-P9]">
      <seq>ggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccggcgcatccgccaaggtggcagctgccccggctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcacttttgagtgagaaaagaacttacactttctactgtgcacctcacccaggagctgggatgggtggcaaagttactgttaactaattttctcacctctctgntgtgtaaaagntgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggactgtaatattgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2188" stop="3483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2488" g_stop="3183" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E409305" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2488" e_stop="3183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCAC-TTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTT</genome_strand>
        <mrna_strand>GGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTTGAGTGAGAAAAGAACTTACACTTTCTACTGTGCACCTCACCCAGGAGCTGGGATGGGTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGNTGTGTAAAAGNTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATATTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476350" ref_strand="+" ref_description="SGN-E476350 [cSTB-44-B11]">
      <seq>ggccactgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccggcgcatccgccaaggtggcagctgccccggctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactgtctactgtgcacctcaccagggagctggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2188" stop="3273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2488" g_stop="2973" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E476350" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2488" e_stop="2973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAAT</genome_strand>
        <mrna_strand>GGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTGTCTACTGTGCACCTCACCAGGGAGCTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734895" ref_strand="+" ref_description="SGN-E734895 [LB13DE08]">
      <seq>gccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2189" stop="3470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2489" g_stop="3170" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E734895" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2489" e_stop="3170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTG</genome_strand>
        <mrna_strand>GCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729739" ref_strand="+" ref_description="SGN-E729739 [LA21DG09]">
      <seq>ctgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2193" stop="3453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2493" g_stop="3150" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="659" polyA_stop="672"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E729739" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2493" e_stop="3150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTA</genome_strand>
        <mrna_strand>CTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469621" ref_strand="+" ref_description="SGN-E469621 [cSTB-12-D2]">
      <seq>tgttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccggcgcatccgccaaggtggcagctgccccggctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2194" stop="3326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2494" g_stop="3026" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E469621" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2494" e_stop="3026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAG</genome_strand>
        <mrna_strand>TGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408610" ref_strand="+" ref_description="SGN-E408610 [PPI-11-J21]">
      <seq>gttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccgctgcatccgccaaggtggcagctgccccagctgccagattgaccgtgaaggcttctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagtaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatatagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactgattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttcaacattttcgttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggactgtaatattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2195" stop="3479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2495" g_stop="3179" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E408610" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2495" e_stop="3179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGC</genome_strand>
        <mrna_strand>GTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGCTGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGACCGTGAAGGCTTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGTAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATATAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTGA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCGTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469644" ref_strand="+" ref_description="SGN-E469644 [cSTB-12-J20]">
      <seq>gttacctctgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccggcgcatccgccaaggtggcagctgccccggctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccaacttttttggactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2195" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2495" g_stop="3172" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="688"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E469644" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2495" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAACTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373540" ref_strand="+" ref_description="SGN-E373540 [TUS-31-L16]">
      <seq>gttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2195" stop="3469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2495" g_stop="3169" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E373540" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2495" e_stop="3169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACT</genome_strand>
        <mrna_strand>GTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292289" ref_strand="+" ref_description="SGN-E292289 [cLET-1-E23]">
      <seq>gttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaagaaattaaagttgcatatgtatccatgtaatgtcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2195" stop="3443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2495" g_stop="3143" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E292289" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2495" e_stop="3143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTT</genome_strand>
        <mrna_strand>GTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAAGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372651" ref_strand="+" ref_description="SGN-E372651 [TUS-31-E7](-)">
      <seq>ttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagatcaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttttactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaaataatttttttcacacctatgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtatatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2196" stop="3453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2496" g_stop="3159" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E372651" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2496" e_stop="3159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTA-ATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCT</genome_strand>
        <mrna_strand>TTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGATCAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTTTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAAATAATTTTTTTCACACCTATGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTATATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345478" ref_strand="+" ref_description="SGN-E345478 [cTOF-13-L10]">
      <seq>ttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcangaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2196" stop="3458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2496" g_stop="3158" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E345478" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2496" e_stop="3158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGC</genome_strand>
        <mrna_strand>TTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCANGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378183" ref_strand="+" ref_description="SGN-E378183 [TUS-31-E7]">
      <seq>tacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2197" stop="3453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2497" g_stop="3159" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E378183" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2497" e_stop="3159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCT</genome_strand>
        <mrna_strand>TACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372652" ref_strand="+" ref_description="SGN-E372652 [TUS-31-E7]">
      <seq>tacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgcggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctgctgagaaaattacattcaagagcaatgctaggttcccacacaccgtcccatttgatgaatatgaagtcccaactggtgtggatgctagtaccattttcatgtctgaagaggatcttctgaatgctccaggagagacatacagtgtcactttcagtgagaaaggaacttacactttctactgtgcacctcaccagagaactggaatggctggcaaagttactgtcaactaacttttttcacacctctggtttgtataagatgatttgagttcccatcaatttcaactttatccttttagtattgaccttctatttctgatgcgtaatgagaactcaggatattaaagttgcatatgtatccatgtaatgtcattttgagattaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2197" stop="3453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2497" g_stop="3157" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E372652" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2497" e_stop="3157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAG</genome_strand>
        <mrna_strand>TACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGCGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGCTGAGAAAATTACATTCAAGAGCAATGCTAGGTTCCCACACACCGTCCCATTTGATGAATATGAAGTCCCAACTGGTGTGGATGCTAGTACCATTTTCATGTCTGAAGAGGATCTTCTGAATGCTCCAGGAGAGACATACAGTGTCACTTTCAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGAGAACTGGAATGGCTGGCAAAGTTACTGTCAACTAACTTTTTTCACACCTCTGGTTTGTATAAGATGATTTGAGTTCCCATCAATTTCAACTTTATCCTTTTAGTATTGACCTTCTATTTCTGATGCGTAATGAGAACTCAGGATATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGAGATTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278561" ref_strand="+" ref_description="SGN-E278561 [cLEL-2-J22](-)">
      <seq>tcagacatggaaatcttactagcatccacaccagctgggatttcatcttcatcaaatacgacgttgtgtgggaaccctgcattgttcttgaatgtaattttctcaccagcactaacgctgaagttcccaggaataaaagctagactcccatcatcaccaccaagcaacacttcaagtgccatggcattgctagcaagcatcgcgctaacagcggtggcagcaaccacagcaccgacatctttcaaagacgccttcacagtcaatctggcaactggggcagctgccaccttagcggatgcaccggtaggaactctggaagatgatgaagcaccagccttaaggccagtgaaagatggaatagcaacagcagcagaggtactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="3174" stop="2197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2874" g_stop="2500" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E278561" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2874" e_stop="2500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGACATGGAAATCTTACTAGCATCCACACCAGCTGGGATTTCATCTTCATCAAATACGACGTTGTGTGGGAACCCTGCATTGTTCTTGAATGTAATTTTCTCACCAGCACTAACGCTGAAGTTCCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGCCATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACAGCACCGACATCTTTCAAAGACGCCTTCACAGTCAATCTGGCAACTGGGGCAGCTGCCACCTTAGCGGATGCACCGGTGCTAACTCTGGAAGATGATGAAGCACCAGCCTTAAGGCCAGTGAAAGATGGAATAGCAACAGCAGCAGAG</genome_strand>
        <mrna_strand>TCAGACATGGAAATCTTACTAGCATCCACACCAGCTGGGATTTCATCTTCATCAAATACGACGTTGTGTGGGAACCCTGCATTGTTCTTGAATGTAATTTTCTCACCAGCACTAACGCTGAAGTTCCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGCCATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACAGCACCGACATCTTTCAAAGACGCCTTCACAGTCAATCTGGCAACTGGGGCAGCTGCCACCTTAGCGGATGCACCGGTAGGAACTCTGGAAGATGATGAAGCACCAGCCTTAAGGCCAGTGAAAGATGGAATAGCAACAGCAGCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404265" ref_strand="+" ref_description="SGN-E404265 [PPC-13-M3]">
      <seq>tgctgctgttgctattccatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccgctgcatccgccaaggtggcagctgccccagctgccagattgaccgtgaaggcttctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagtaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatatagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactgattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttcaacattttcgttttagtattgcccttctctttttgaggtgtaatgaaaactcangaaattaaagttgcatatttatccatgtaatgtcattttgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2203" stop="3448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2503" g_stop="3148" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E404265" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2503" e_stop="3148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGAT</genome_strand>
        <mrna_strand>TGCTGCTGTTGCTATTCCATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGCTGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGACCGTGAAGGCTTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGTAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATATAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTGA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCGTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCANGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298768" ref_strand="+" ref_description="SGN-E298768 [cLET-44-G9]">
      <seq>gctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagcgtcactttgagtgagaaaggaacttacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2207" stop="3242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2507" g_stop="2942" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E298768" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2507" e_stop="2942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTT</genome_strand>
        <mrna_strand>GCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGCGTCACTTTGAGTGAGAAAGGAACTTACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555150" ref_strand="+" ref_description="SGN-E555150 [cTSC-6-J13]">
      <seq>gctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2213" stop="3365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2513" g_stop="3065" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="570"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E555150" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2513" e_stop="3065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTA</genome_strand>
        <mrna_strand>GCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408940" ref_strand="+" ref_description="SGN-E408940 [PPI-12-L21]">
      <seq>cctcgtgcgcacgaggcatctttcactggcctcaaggctggtgcttcctcatcttccagagttagcaccgctgcatccgccaaggtggcagctgccccagctgccagattgaccgtgaaggcttctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagtaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatatagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactgattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttcaacattttcgttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattataccagctttttttgactgggtatatgcttttgtaacatcaaaaagttcaaccttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2220" stop="3506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2520" g_stop="3206" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="701" r_length="685" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="713"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E408940" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2520" e_stop="3206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTT</genome_strand>
        <mrna_strand>CATCTTTCACTGGCCTCAAGGCTGGTGCTTCCTCATCTTCCAGAGTTAGCACCGCTGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGACCGTGAAGGCTTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGTAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATATAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTGA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCGTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATT-ATACCAGCTTTTTTTGACTGGGTATATGCTTTTGTAACATCAAAAAGTTCAACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324854" ref_strand="+" ref_description="SGN-E324854 [cTOC-11-M16]">
      <seq>tttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2224" stop="3357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2524" g_stop="3057" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E324854" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2524" e_stop="3057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTT</genome_strand>
        <mrna_strand>TTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285792" ref_strand="+" ref_description="SGN-E285792 [cLES-5-M18]">
      <seq>ttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2225" stop="3273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2525" g_stop="2973" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E285792" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2525" e_stop="2973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAAT</genome_strand>
        <mrna_strand>TTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278190" ref_strand="+" ref_description="SGN-E278190 [cLER-9-B11]">
      <seq>cttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgcctccgctgtttgcgcgatgctngctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2234" stop="3273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2534" g_stop="2973" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E278190" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2534" e_stop="2973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAAT</genome_strand>
        <mrna_strand>CTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCTCCGCTGTTTGCGCGATGCTNGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373539" ref_strand="+" ref_description="SGN-E373539 [TUS-31-L16](-)">
      <seq>tattttccaaagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggggtttttgaaaaatgtcggtgctgtggttgctgcccccgctgttagggcgatgcttgctagcaatgccatggcactttaagtgttggttggtggtgatgatgggagtttagcttttatttctggaaacttcagggttaggggtggtgagaaaattacattcaagaacaatgcagggttcccccacaacgttgtatttgatgaaaatgaaatcccagctggggtggatggtagtaaaatttccatgtttgaaaaggattttttgaatgcagcaggaaaaacatacagggtccctttgagtgaaaaaggaacttacacttttttttgtgcccctccccagggaggtggaatggttggcaaagttactgtcaaataattttttttacccctttgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttttttttttgaggggtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaaaaccagcttttttgggctgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2254" stop="3471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2553" g_stop="3169" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="622" polyA_stop="663"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E373539" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2553" e_stop="3169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACT</genome_strand>
        <mrna_strand>TATTTTCCAAAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGGGTTTTTGAAAAATGTCGGTGCTGTGGTTGCTGCCCCCGCTGTTAGGGCGATGCTTGCTAGCAATGCCATGGCACTTTAAGTGTTGGTTGGTGGTGATGATGGGAGTTTAGCTTTTATTTCTGGAAACTTCAGGGTTAGGGGTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCCCACAACGTTGTATTTGATGAAAATGAAATCCCAGCTGGGGTGGATGGTAGTAAAATTTCCATGTTTGAAAAGGATTTTTTGAATGCAGCAGGAAAAACATACAGGGTCCCTTTGAGTGAAAAAGGAACTTACACTTTTTTTTGTGCCCCTCCCCAGGGAGGTGGAATGGTTGGCAAAGTTACTGTCAAATAATTTTTTTTACCCCTTTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTTTTTTTTTGAGGGGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAAAACCAGCTTTTTTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572608" ref_strand="+" ref_description="SGN-E572608 [31789]">
      <seq>ccagagttagcaccggcgcatccgccaaggtggcagctgccccagctgccagattgagcgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgtgagtcttgcttttattcctgngaaacttcagcgttagcgctggtgagaaaattacgttcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggactgtaatattgcttttgtaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2259" stop="3491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2559" g_stop="3191" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E572608" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2559" e_stop="3191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGG-AACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATC</genome_strand>
        <mrna_strand>CCAGAGTTAGCACCGGCGCATCCGCCAAGGTGGCAGCTGCCCCAGCTGCCAGATTGAGCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGTGAGTCTTGCTTTTATTCCTGNGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACGTTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATATTGCTTTTGTAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408664" ref_strand="+" ref_description="SGN-E408664 [PPI-11-F24]">
      <seq>ggcgcatccgccaaggtggcagctgccccggctgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2273" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2573" g_stop="3172" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E408664" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2573" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GGCGCATCCGCCAAGGTGGCAGCTGCCCCGGCTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339979" ref_strand="+" ref_description="SGN-E339979 [cTOF-3-E13]">
      <seq>cgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2281" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2581" g_stop="3172" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E339979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2581" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539576" ref_strand="+" ref_description="SGN-E539576 [TUS-59-G14](-)">
      <seq>ctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttttactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaatgttgcttttgtaacatcaaaaagttcaacctttctcctgatggtaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2283" stop="3529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2583" g_stop="3216" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="637" polyA_stop="664"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E539576" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2583" e_stop="3216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATG</genome_strand>
        <mrna_strand>CTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTTTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTTCTCCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285348" ref_strand="+" ref_description="SGN-E285348 [cLER-20-B17]">
      <seq>taaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattgtgtgattaataccagcttttttggactgtaatgttgcttttgtaacatcaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2284" stop="3497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2584" g_stop="3197" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E285348" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2584" e_stop="3197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAG</genome_strand>
        <mrna_strand>TAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTGTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285113" ref_strand="+" ref_description="SGN-E285113 [cLER-20-I11]">
      <seq>tttttttttttttttttaagcaactgaaacgggtatgttattttaccatcaggagaaaggttgaactttttgatgttacaaaagcaacattacagtccaaaaaagctggtattaatcacaaaatgacattacatggatacatatgcaactttaatttcctgagttttcattacacctcaaaaagagaagggcaatactaaaaggaaaatgttgaaattgatgggaactcaaatcaacttttacaaaacagaggtgtgaaaaaaattagttgacagtaactttgccaaccattccagctccctggtgaggtgcacagtagaaagtgtaagttcctttctcactcaaagtgacactgtatgtctctcctgctgcattcagaagatcctcttcagacatggaaatcttactagcatccacaccagctgggatttcatcttcatcaaatacgacgttgtgtgggaaccctgcattgttcttgaatgtaattttctcaccagcactaacgctgaagtttccaggaataaaagctagactcccatcatcaccaccaagcaacacttcaagtgccatggcattgctagcaagcatcgcgctaacagcggtggcagcaaccacagcaccgacatctttcaaagacgccttcacagtcaatctggcaactggggcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="3548" stop="2294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3262" g_stop="2594" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E285113" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3262" e_stop="2594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTTTGAAGAGTTTAAGCAACTGAAACGGGTATGTTATTTTACCATCAGGAGGAAGGTTGAACTTTTTGATGTTACAAAAGCAACATTACAGTCCAAAAAAGCTGGTATTAATCACAAAATGACATTACATGGATACATATGCAACTTTAATTTCCTGAGTTTTCATTACACCTCAAAAAGAGAAGGGCAATACTAAAAGGAAAATGTTGAAATTGATGGGAACTCAAATCAACTTTTACAAAACAGAGGTGTGAAAAAAATTAGTTGACAGTAACTTTGCCAACCATTCCAGCTCCCTGGTGAGGTGCACAGTAGAAAGTGTAAGTTCCTTTCTCACTCAAAGTGACACTGTATGTCTCTCCTGCTGCATTCAGAAGATCCTCTTCAGACATGGAAATCTTACTAGCATCCACACCAGCTGGGATTTCATCTTCATCAAATACGACGTTGTGTGGGAACCCTGCATTGTTCTTGAATGTAATTTTCTCACCAGCACTAACGCTGAAGTTCCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGCCATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACAGCACCGACATCTTTCAAAGACGCCTTCACAGTCAATCTGGCAACTGGGGCAGC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTAAGCAACTGAAACGGGTATGTTATTTTACCATCAGGAGAAAGGTTGAACTTTTTGATGTTACAAAAGCAACATTACAGTCCAAAAAAGCTGGTATTAATCACAAAATGACATTACATGGATACATATGCAACTTTAATTTCCTGAGTTTTCATTACACCTCAAAAAGAGAAGGGCAATACTAAAAGGAAAATGTTGAAATTGATGGGAACTCAAATCAACTTTTACAAAACAGAGGTGTGAAAAAAATTAGTTGACAGTAACTTTGCCAACCATTCCAGCTCCCTGGTGAGGTGCACAGTAGAAAGTGTAAGTTCCTTTCTCACTCAAAGTGACACTGTATGTCTCTCCTGCTGCATTCAGAAGATCCTCTTCAGACATGGAAATCTTACTAGCATCCACACCAGCTGGGATTTCATCTTCATCAAATACGACGTTGTGTGGGAACCCTGCATTGTTCTTGAATGTAATTTTCTCACCAGCACTAACGCTGAAGTTTCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGCCATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACAGCACCGACATCTTTCAAAGACGCCTTCACAGTCAATCTGGCAACTGGGGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287015" ref_strand="+" ref_description="SGN-E287015 [cLES-6-F15]">
      <seq>gccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcagctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttgcttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2297" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2597" g_stop="3172" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E287015" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2597" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCAGCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTGCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412976" ref_strand="-" ref_description="SGN-E412976 [STM-17-I21]">
      <seq>cccggctgccagattgaccgtgaaggcgtctttgaaagatgtcggtgctgttgttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgaaatatttatccatgtaaaaaaaaaaaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2299" stop="3434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2599" g_stop="3117" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="548"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E412976" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412976" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2599" e_stop="3117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTG</genome_strand>
        <mrna_strand>CCCGGCTGCCAGATTGACCGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTTGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285353" ref_strand="+" ref_description="SGN-E285353 [cLER-20-D17]">
      <seq>attgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgtttgcgcgatgcttgctagcaatgccatggcacttgaagcgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcatatctgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccatggagctggaatggctggcaaagttactgtcaactaatatggttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacatttgacttttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2311" stop="3367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2611" g_stop="3067" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E285353" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2611" e_stop="3067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGT</genome_strand>
        <mrna_strand>ATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTTGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGCGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCATATCTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCATGGAGCTGGAATGGCTGGCAAAGTTACTGTCAACTAATATGGTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTGACTTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295746" ref_strand="+" ref_description="SGN-E295746 [cLET-25-I19]">
      <seq>tggtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcagggaaattaagtgcatatgtatccatgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2326" stop="3435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2624" g_stop="3135" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E295746" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2624" e_stop="3135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAAT</genome_strand>
        <mrna_strand>TGGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGGAAATTAAG-TGCATATGTATCCATGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297784" ref_strand="+" ref_description="SGN-E297784 [cLET-38-M18]">
      <seq>ttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2330" stop="3469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2630" g_stop="3169" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E297784" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2630" e_stop="3169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACT</genome_strand>
        <mrna_strand>TTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284349" ref_strand="+" ref_description="SGN-E284349 [cLER-16-E9]">
      <seq>tgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2331" stop="3424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2631" g_stop="3124" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E284349" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2631" e_stop="3124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGT</genome_strand>
        <mrna_strand>TGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281685" ref_strand="-" ref_description="SGN-E281685 [cLER-14-P5]">
      <seq>tgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2338" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2638" g_stop="3172" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="554"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E281685" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281685" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2638" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>TGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298400" ref_strand="+" ref_description="SGN-E298400 [cLET-41-H4]">
      <seq>cggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctggaaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgagtaataccagcttttttggactgtaatgttgcttttgtaacatcaaaaagttcaacctttctcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2341" stop="3513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2641" g_stop="3213" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E298400" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2641" e_stop="3213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTG</genome_strand>
        <mrna_strand>CGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGAAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGAGTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTTCTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278681" ref_strand="+" ref_description="SGN-E278681 [cLER-10-H10]">
      <seq>tttaatcacaaaatgacattacatggatacatatgcaactttaatttcctgagttttcattacacctcaaaaagagaagggcaaatactaaaaggaaaatgttgaaattgatgggaactcaaatcaacttttacaaaacagaggtgtgaaaaaaattagttgacagtaactttgccaaccattccagctccctggtgaggtgcacagtagaaagtgtaagttcctttctcactcaaagtgacactgtatgtctctcctgctgcattcagaagatcctcttcagacatggaaatcttactagcatccacaccagctgggatttcatcttcatcaaatacgacgttgtgtgggaaccctgcattgttcttgaatgtaattttctcaccagcactaacgctgaagtttccaggaataaaagctagactcccatcatcaccaccaagcaacacttcaagtgccatggcattgctagcaagcatcgcgctaacagcggtggcagcaaccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="3451" stop="2347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3152" g_stop="2647" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E278681" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3152" e_stop="2647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATCACAAAATGACATTACATGGATACATATGCAACTTTAATTTCCTGAGTTTTCATTACACCTCAAAAAGAGAAGGGC-AATACTAAAAGGAAAATGTTGAAATTGATGGGAACTCAAATCAACTTTTACAAAACAGAGGTGTGAAAAAAATTAGTTGACAGTAACTTTGCCAACCATTCCAGCTCCCTGGTGAGGTGCACAGTAGAAAGTGTAAGTTCCTTTCTCACTCAAAGTGACACTGTATGTCTCTCCTGCTGCATTCAGAAGATCCTCTTCAGACATGGAAATCTTACTAGCATCCACACCAGCTGGGATTTCATCTTCATCAAATACGACGTTGTGTGGGAACCCTGCATTGTTCTTGAATGTAATTTTCTCACCAGCACTAACGCTGAAGTTCCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGCCATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACA</genome_strand>
        <mrna_strand>TTTAATCACAAAATGACATTACATGGATACATATGCAACTTTAATTTCCTGAGTTTTCATTACACCTCAAAAAGAGAAGGGCAAATACTAAAAGGAAAATGTTGAAATTGATGGGAACTCAAATCAACTTTTACAAAACAGAGGTGTGAAAAAAATTAGTTGACAGTAACTTTGCCAACCATTCCAGCTCCCTGGTGAGGTGCACAGTAGAAAGTGTAAGTTCCTTTCTCACTCAAAGTGACACTGTATGTCTCTCCTGCTGCATTCAGAAGATCCTCTTCAGACATGGAAATCTTACTAGCATCCACACCAGCTGGGATTTCATCTTCATCAAATACGACGTTGTGTGGGAACCCTGCATTGTTCTTGAATGTAATTTTCTCACCAGCACTAACGCTGAAGTTTCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGCCATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461770" ref_strand="+" ref_description="SGN-E461770 [cPRO-9-D21]">
      <seq>gttgctgccaccgctgttagcgcgatgcttgctagtaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatatagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactgattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttcaacattttcgttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2351" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2651" g_stop="3174" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E461770" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2651" e_stop="3174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAAT</genome_strand>
        <mrna_strand>GTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGTAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATATAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTGA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCGTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715939" ref_strand="+" ref_description="SGN-E715939 [FB15CG04]">
      <seq>caccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaatgttgcttttgtaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2359" stop="3496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2659" g_stop="3196" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="551"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E715939" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2659" e_stop="3196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAA</genome_strand>
        <mrna_strand>CACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468252" ref_strand="+" ref_description="SGN-E468252 [cSTB-3-G3]">
      <seq>ccgctgttagcgccgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2361" stop="3434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2661" g_stop="3122" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="483"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E468252" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2661" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTGTTAGCG-CGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>CCGCTGTTAGCGCCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615272" ref_strand="+" ref_description="SGN-E615272 [65069]">
      <seq>gcgatgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaatgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgccattttgtgattaataccaacttttttggactgtaaaacagataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2372" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2672" g_stop="3172" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E615272" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2672" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GCGATGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAATGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGCCATTTTGTGATTAATACCAACTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405617" ref_strand="-" ref_description="SGN-E405617 [PPI-1-I1]">
      <seq>tgcttgctagcaatgccatggcacttgatgtgttgcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaccaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaaaaggattttttgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttttactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggacggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2376" stop="24168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2676" g_stop="3174" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3175" i_stop="3339" i_length="165">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3340" g_stop="3381" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="540" r_length="42" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E405617" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405617" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2676" e_stop="3174"/>
          <exon e_start="3340" e_stop="3381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATGGTAAAATAACATACCCGTTTCAGTTGCTTAAACTCTTCAAAAATGTTGTCAATCATCCATAAGTAGAGCGTTTTTGGAGAATCCGAGCAACATAGTATCTCCTGACCTTTATGGACTTATCCGTATTCACAGCAATGAAACTAAAGAATAAAAATATAATTCTCA</genome_strand>
        <mrna_strand>TGCTTGCTAGCAATGCCATGGCACTTGATGTGTTGCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGACCAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAAAGGATTTTTTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTTTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACGGTAAA.....................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203360" ref_strand="+" ref_description="SGN-E203360 [cLEB-3-P1](-)">
      <seq>cacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2397" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2697" g_stop="3172" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="495"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E203360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2697" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613368" ref_strand="+" ref_description="SGN-E613368 [63141]">
      <seq>gcttggtggtgatgatgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatatagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactgattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttcaacattttcgttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagctttttttggactgtaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2410" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2710" g_stop="3180" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E613368" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2710" e_stop="3180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGC-TTTTTTGGACTGTAATGTTGCT</genome_strand>
        <mrna_strand>GCTTGGTGGTGATGATGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATATAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTGA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCGTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTTGGACTGTAAAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714274" ref_strand="+" ref_description="SGN-E714274 [FB11AA01]">
      <seq>tgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaatgttgcttttgtaacatcaaaaagttcaaccttcctcctgatggtaaaataacatacccgtttcagttgcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2419" stop="3548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2719" g_stop="3258" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E714274" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2719" e_stop="3258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATGGTAAAATAACATACCCGTTTCAGTTGCTTAAACTCTTCAAAA</genome_strand>
        <mrna_strand>TGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATGGTAAAATAACATACCCGTTTCAGTTGCTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733847" ref_strand="+" ref_description="SGN-E733847 [LB11AD10]">
      <seq>gatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaatgttgcttttgtaacatcaaaaagttcaaccttcctcctgatggtaaaataacatacccgtttcagttgcttaaactcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2420" stop="3559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2720" g_stop="3264" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E733847" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2720" e_stop="3264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATGGTAAAATAACATACCCGTTTCAGTTGCTTAAACTCTTCAAAAATGTTG</genome_strand>
        <mrna_strand>GATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATGGTAAAATAACATACCCGTTTCAGTTGCTTAAACTCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402574" ref_strand="+" ref_description="SGN-E402574 [PPC-8-I11]">
      <seq>tgggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2425" stop="3434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2725" g_stop="3122" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="408" polyA_stop="417"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E402574" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2725" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>TGGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618899" ref_strand="+" ref_description="SGN-E618899 [69582]">
      <seq>tggagtcttgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaatgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgccatttggtgattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2427" stop="3453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2726" g_stop="3150" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="436"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E618899" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2726" e_stop="3150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTA</genome_strand>
        <mrna_strand>TGGAGTCTTGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAATGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGCCATTTGGTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412101" ref_strand="-" ref_description="SGN-E412101 [STM-15-B14]">
      <seq>tgcttttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttttgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttttactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttttacattttccttttagtattgcccttatctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttgggcggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2435" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2734" g_stop="3172" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="476"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E412101" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412101" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2734" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>TGCTTTTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTTTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTTTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTTTACATTTTCCTTTTAGTATTGCCCTTATCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGGCGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468261" ref_strand="-" ref_description="SGN-E468261 [cSTB-3-I3]">
      <seq>ttattcctggaaacttcagcgttagcgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatatagtgtcactttgagtgagaaaggaacttacactttttactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactgattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttcaacattttcgttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggcctgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2439" stop="24168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2739" g_stop="3174" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3175" i_stop="3348" i_length="174">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3349" g_stop="3378" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="465" r_length="30" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E468261" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468261" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2739" e_stop="3174"/>
          <exon e_start="3349" e_stop="3378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATGGTAAAATAACATACCCGTTTCAGTTGCTTAAACTCTTCAAAAATGTTGTCAATCATCCATAAGTAGAGCGTTTTTGGAGAATCCGAGCAACATAGTATCTCCTGACCTTTATGGACTTATCCGTATTCACAGCAATGAAACTAAAGAATAAAAATATAATTC</genome_strand>
        <mrna_strand>TTATTCCTGGAAACTTCAGCGTTAGCGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATATAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTTTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTGA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCGTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGCCTGTAAA..............................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292085" ref_strand="+" ref_description="SGN-E292085 [cLET-1-E23](-)">
      <seq>cttcagcgttagtgctggtgagaaaattacattcaagaccaatgcagggttcccacacaacgtggtatttgatgaagatgaaatcccagctggtgtggatgctagtaaaatttccatgtctgaagaggattttttgaatgcagcaggagagacatacagtgtccctttgagtgagaaaggaacttaccctttttactgtgcccctccccagggagctggaatggttggcaaagttactgtcaactaatttttttcacccctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagaattgcccttctctttttgaggggtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaaaaccagcttttttgggctgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2452" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2752" g_stop="3172" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="422" polyA_stop="464"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E292085" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2752" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGACCAATGCAGGGTTCCCACACAACGTGGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAAATTTCCATGTCTGAAGAGGATTTTTTGAATGCAGCAGGAGAGACATACAGTGTCCCTTTGAGTGAGAAAGGAACTTACCCTTTTTACTGTGCCCCTCCCCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACCCCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGAATTGCCCTTCTCTTTTTGAGGGGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAAAACCAGCTTTTTTGGGCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218884" ref_strand="+" ref_description="SGN-E218884 [cLEL-18-H19](-)">
      <seq>agtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagataaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccaaaaaaaaaagcnaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2462" stop="3429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2762" g_stop="3122" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="368" polyA_stop="378"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E218884" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2762" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>AGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATAAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614676" ref_strand="+" ref_description="SGN-E614676 [64466]">
      <seq>ctggtgagaaaattacattcaagaacaatgcaggttcccacacaatgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaagggttggcaaagttactgttaactaattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttcaacattttccttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2466" stop="3365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2766" g_stop="3071" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E614676" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2766" e_stop="3071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTG</genome_strand>
        <mrna_strand>CTGGTGAGAAAATTACATTCAAGAACAATGCAGG-TTCCCACACAATGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAAGGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203399" ref_strand="+" ref_description="SGN-E203399 [cLEB-3-H14](-)">
      <seq>tggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtggtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttttactgtgcacctcaccagggagctggaatggttggcaaagttagtgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2467" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2767" g_stop="3172" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="429"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E203399" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2767" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>TGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTGGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTTTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTAGTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283176" ref_strand="+" ref_description="SGN-E283176 [cLER-17-F13]">
      <seq>tcgagttttttttttttttttttttaagcaactgaaacgggtatgttattttaccatcaggagaaaggttgaactttttgatgttacaaaagcaacattacagtccaaaaaagctggtattaatcacaaaatgacattacatggatacatatgcaactttaatttcctgagttttcattacacctcaaaaagagaagggcaatactaaaaggaaaatgttgaaattgatgggaactcaaatcaacttttacaaaacagaggtgtgaaaaaaattagttgacagtaactttgccaaccattccagctccctggtgaggtgcacagtagaaagtgtaagttcctttctcactcaaagtgacactgtatgtctctcctgctgcattcagaagatcctcttcagacatggaaatcttactagcatccacaccagctgggatttcatcttcatcaaatacgacgttgtgtgggaaccctgcattgttcttgaatgtaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="24172" stop="2475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3374" g_stop="3353" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.636"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3352" i_stop="3249" i_length="104">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3248" g_stop="2775" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="496" r_length="474" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E283176" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3374" e_stop="3353"/>
          <exon e_start="3248" e_stop="2775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTTTTATTCTTTAGTTTCATTGCTGTGAATACGGATAAGTCCATAAAGGTCAGGAGATACTATGTTGCTCGGATTCTCCAAAAACGCTCTACTTATGGATGATTGACAACATTTTTGAAGAGTTTAAGCAACTGAAACGGGTATGTTATTTTACCATCAGGAGGAAGGTTGAACTTTTTGATGTTACAAAAGCAACATTACAGTCCAAAAAAGCTGGTATTAATCACAAAATGACATTACATGGATACATATGCAACTTTAATTTCCTGAGTTTTCATTACACCTCAAAAAGAGAAGGGCAATACTAAAAGGAAAATGTTGAAATTGATGGGAACTCAAATCAACTTTTACAAAACAGAGGTGTGAAAAAAATTAGTTGACAGTAACTTTGCCAACCATTCCAGCTCCCTGGTGAGGTGCACAGTAGAAAGTGTAAGTTCCTTTCTCACTCAAAGTGACACTGTATGTCTCTCCTGCTGCATTCAGAAGATCCTCTTCAGACATGGAAATCTTACTAGCATCCACACCAGCTGGGATTTCATCTTCATCAAATACGACGTTGTGTGGGAACCCTGCATTGTTCTTGAATGTAATTT</genome_strand>
        <mrna_strand>TCGAGTTTTTTTTTTTTTTTTT........................................................................................................TTTAAGCAACTGAAACGGGTATGTTATTTTACCATCAGGAGAAAGGTTGAACTTTTTGATGTTACAAAAGCAACATTACAGTCCAAAAAAGCTGGTATTAATCACAAAATGACATTACATGGATACATATGCAACTTTAATTTCCTGAGTTTTCATTACACCTCAAAAAGAGAAGGGCAATACTAAAAGGAAAATGTTGAAATTGATGGGAACTCAAATCAACTTTTACAAAACAGAGGTGTGAAAAAAATTAGTTGACAGTAACTTTGCCAACCATTCCAGCTCCCTGGTGAGGTGCACAGTAGAAAGTGTAAGTTCCTTTCTCACTCAAAGTGACACTGTATGTCTCTCCTGCTGCATTCAGAAGATCCTCTTCAGACATGGAAATCTTACTAGCATCCACACCAGCTGGGATTTCATCTTCATCAAATACGACGTTGTGTGGGAACCCTGCATTGTTCTTGAATGTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215895" ref_strand="+" ref_description="SGN-E215895 [cLEL-15-B18](-)">
      <seq>tcaagaacaatgcagggttcccacacaacgtcgtattgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2484" stop="3434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2784" g_stop="3122" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="349" polyA_stop="369"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E215895" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2784" e_stop="3122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</genome_strand>
        <mrna_strand>TCAAGAACAATGCAGGGTTCCCACACAACGTCGTA-TTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615415" ref_strand="+" ref_description="SGN-E615415 [65213]">
      <seq>cagggttcccacacaatgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgccattttgtgattaataccaacttttttggactgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2496" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2796" g_stop="3172" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E615415" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2796" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CAGGGTTCCCACACAATGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGCCATTTTGTGATTAATACCAACTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405015" ref_strand="+" ref_description="SGN-E405015 [PPC-16-M13]">
      <seq>ccaacgtcgtattcgatgaggatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttctacattttccttttagtattgcccttatctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggactgtaataatgcttttgtaacatcaaaaagttcaaccttannnnanaaanaaanaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2509" stop="3506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2808" g_stop="3216" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E405015" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2808" e_stop="3216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATG</genome_strand>
        <mrna_strand>CCAACGTCGTATTCGATGAGGATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCTACATTTTCCTTTTAGTATTGCCCTTATCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATAATGCTTTTGTAACATCAAAAAGTTCAACCTTANNNNANAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221142" ref_strand="+" ref_description="SGN-E221142 [cLEL-22-F21](-)">
      <seq>cgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtccctttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggcctgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2512" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2812" g_stop="3172" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="362" polyA_stop="382"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E221142" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2812" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCCCTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGCCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216406" ref_strand="+" ref_description="SGN-E216406 [cLEL-13-O17](-)">
      <seq>gtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttttactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtccaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2516" stop="3471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2816" g_stop="3169" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="359" polyA_stop="381"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E216406" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2816" e_stop="3169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACT</genome_strand>
        <mrna_strand>GTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTTTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739519" ref_strand="+" ref_description="SGN-E739519 [LC17DB07]">
      <seq>tgaagatgaaatcccagttggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2524" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2824" g_stop="3172" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="360"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E739519" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2824" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>TGAAGATGAAATCCCAGTTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735743" ref_strand="+" ref_description="SGN-E735743 [LC02DD05]">
      <seq>tgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2524" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2824" g_stop="3172" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="360"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E735743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2824" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>TGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738178" ref_strand="+" ref_description="SGN-E738178 [LC12CF12]">
      <seq>tgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2524" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2824" g_stop="3172" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="360"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E738178" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2824" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>TGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738879" ref_strand="+" ref_description="SGN-E738879 [LC15BB11]">
      <seq>tgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2524" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2824" g_stop="3172" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="360"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E738879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2824" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>TGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739250" ref_strand="+" ref_description="SGN-E739250 [LC16CG04]">
      <seq>tgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2524" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2824" g_stop="3172" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="360"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E739250" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2824" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>TGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731342" ref_strand="+" ref_description="SGN-E731342 [LA26DD05]">
      <seq>gatcatgacatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgataaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2525" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2825" g_stop="3172" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="349" polyA_stop="359"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E731342" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2825" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GATCATGACATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGATAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401849" ref_strand="-" ref_description="SGN-E401849 [PPC-5-F1]">
      <seq>gatgaaatcccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttctacattttccttttagtattgcccttatctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2528" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2828" g_stop="3172" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="370"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E401849" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401849" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2828" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GATGAAATCCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCTACATTTTCCTTTTAGTATTGCCCTTATCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616251" ref_strand="+" ref_description="SGN-E616251 [66058]">
      <seq>atgaaatcccagctggtgtagancaagtaagatttccatggctgaagaggatcttctgaatgcaggaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggactgtaatattgcttttgtaacatcaaaaagttcaacctttctcctgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2529" stop="3514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2829" g_stop="3216" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="396"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E616251" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2829" e_stop="3216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATG</genome_strand>
        <mrna_strand>ATGAAATCCCAGCTGGTGTAGA-NCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGGAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATATTGCTTTTGTAACATCAAAAAGTTCAACCTTTCTCCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215775" ref_strand="+" ref_description="SGN-E215775 [cLEL-15-D22](-)">
      <seq>gaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtccctttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2531" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2831" g_stop="3172" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="343" polyA_stop="371"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E215775" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2831" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCCCTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408604" ref_strand="+" ref_description="SGN-E408604 [PPI-11-J9]">
      <seq>cccagctggtgtagatgcaagtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttctacattttccttttagtattgcccttatctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggactgtnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2536" stop="3471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2836" g_stop="3172" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="338" polyA_stop="367"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E408604" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2836" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CCCAGCTGGTGTAGATGCAAGTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCTACATTTTCCTTTTAGTATTGCCCTTATCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216053" ref_strand="+" ref_description="SGN-E216053 [cLEL-13-O17](-)">
      <seq>cagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatncagtgtccctttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttcctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaatcccagcttttttggcctgtaacaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2538" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2838" g_stop="3172" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="337" polyA_stop="360"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E216053" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2838" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTT-CTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>CAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATNCAGTGTCCCTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATCCCAGCTTTTTTGGCCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221273" ref_strand="+" ref_description="SGN-E221273 [cLEL-22-F21](-)">
      <seq>gctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttgggctgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2540" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2840" g_stop="3172" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="334" polyA_stop="354"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E221273" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2840" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGGCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279531" ref_strand="+" ref_description="SGN-E279531 [cLER-5-M18]">
      <seq>tggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaatgttgcttttgtaacatcnnanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2542" stop="3496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2842" g_stop="3196" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="384"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E279531" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2842" e_stop="3196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAA</genome_strand>
        <mrna_strand>TGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCNNANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410528" ref_strand="+" ref_description="SGN-E410528 [PPI-17-E18]">
      <seq>gtaagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2556" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2856" g_stop="3172" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="317" polyA_stop="335"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E410528" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2856" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GTAAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339210" ref_strand="+" ref_description="SGN-E339210 [cTOF-4-K11]">
      <seq>taagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2557" stop="3453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2857" g_stop="3150" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="295" polyA_stop="319"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E339210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2857" e_stop="3150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTA</genome_strand>
        <mrna_strand>TAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457737" ref_strand="+" ref_description="SGN-E457737 [cPRO-3-H3]">
      <seq>aagatttccatggctgaagaagatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2558" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2858" g_stop="3172" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="315" polyA_stop="324"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E457737" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2858" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>AAGATTTCCATGGCTGAAGAAGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459646" ref_strand="+" ref_description="SGN-E459646 [cPRO-28-D1]">
      <seq>aagatttccatggctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactaattttctcacctctctgttgtgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2558" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2858" g_stop="3172" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="315" polyA_stop="324"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E459646" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2858" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>AAGATTTCCATGGCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAA-TTTTCTCACCTCTCTGTTGTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289807" ref_strand="+" ref_description="SGN-E289807 [cLET-9-D15]">
      <seq>tctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagctttttttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2570" stop="3469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2870" g_stop="3169" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E289807" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2870" e_stop="3169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGC-TTTTTTGGACT</genome_strand>
        <mrna_strand>TCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215695" ref_strand="+" ref_description="SGN-E215695 [cLEL-15-D22](-)">
      <seq>gatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2579" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2879" g_stop="3172" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="295" polyA_stop="323"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E215695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2879" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278415" ref_strand="-" ref_description="SGN-E278415 [cLEL-2-J22]">
      <seq>tctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaaggtcgggtttgtgattaataccagcttttttggactgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2584" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2884" g_stop="3172" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="291" polyA_stop="309"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E278415" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278415" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2884" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTC-ATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>TCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAAGGTCGGGTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397196" ref_strand="+" ref_description="SGN-E397196 [TUS-45-O17]">
      <seq>gagacatacagtgtctctttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2600" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2900" g_stop="3172" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="274" polyA_stop="283"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E397196" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2900" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GAGACATACAGTGTCTCTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397433" ref_strand="+" ref_description="SGN-E397433 [TUS-45-P17](-)">
      <seq>gagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttatggactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2600" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2900" g_stop="3172" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="274" polyA_stop="283"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E397433" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2900" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTATGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398728" ref_strand="+" ref_description="SGN-E398728 [TUS-45-P17]">
      <seq>gagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2600" stop="3468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2900" g_stop="3168" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E398728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2900" e_stop="3168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGAC</genome_strand>
        <mrna_strand>GAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289771" ref_strand="+" ref_description="SGN-E289771 [cLET-4-N24]">
      <seq>agacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2601" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2901" g_stop="3172" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="273" polyA_stop="282"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E289771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2901" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>AGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290119" ref_strand="+" ref_description="SGN-E290119 [cLET-5-D6]">
      <seq>agacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2601" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2901" g_stop="3172" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="273" polyA_stop="282"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E290119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2901" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>AGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290288" ref_strand="+" ref_description="SGN-E290288 [cLET-5-H12]">
      <seq>acatacagggtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2603" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2903" g_stop="3172" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="271" polyA_stop="280"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E290288" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2903" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>ACATACAGGGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615444" ref_strand="+" ref_description="SGN-E615444 [65243]">
      <seq>gtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgttaactgattttctcacctctctgttatgtaaaagttgatttgagttcccatcaatttcaacattttcgttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatttatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2612" stop="3473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2912" g_stop="3172" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="261" polyA_stop="272"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E615444" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2912" e_stop="3172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</genome_strand>
        <mrna_strand>GTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTGA-TTTTCTCACCTCTCTGTTATGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCGTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATTTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215563" ref_strand="+" ref_description="SGN-E215563 [cLEL-15-B18](-)">
      <seq>tttctactgtgcacctcaccaggaagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattcaagttgcatatgtatccatgtttacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2641" stop="24166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2941" g_stop="3133" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3134" i_stop="3517" i_length="384">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.273" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3518" g_stop="3537" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="213" r_length="20" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E215563" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>213</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2941" e_stop="3133"/>
          <exon e_start="3518" e_stop="3537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATGGTAAAATAACATACCCGTTTCAGTTGCTTAAACTCTTCAAAAATGTTGTCAATCATCCATAAGTAGAGCGTTTTTGGAGAATCCGAGCAACATAGTATCTCCTGACCTTTATGGACTTATCCGTATTCACAGCAATGAAACTAAAGAATAAAAATATAATTCTCATAGTAGAAAGGGATATAGATAACCGCAAATGGCCGAAAATTTTCACTCTGCATCTGTTGAAATTACCTTAAAGTTAACTGTACATTTGGAGAGATTCTTGAGATCATCATGAACAAGATATATATTACATTATTAGTATAACAAAGAATGGTATAA</genome_strand>
        <mrna_strand>TTTCTACTGTGCACCTCACCAGGAAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTCAAGTTGCATATGTATCCATGTT................................................................................................................................................................................................................................................................................................................................................................................................TACAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297510" ref_strand="+" ref_description="SGN-E297510 [cLET-28-O24]">
      <seq>tgtaaaagttgatttgagttcccatcaattacaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaagaaattaaagttgcatatgtatccatgtaacgtcattttgtgattaataccagcttttttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2719" stop="3469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3019" g_stop="3169" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E297510" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>151</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3019" e_stop="3169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACT</genome_strand>
        <mrna_strand>TGTAAAAGTTGATTTGAGTTCCCATCAATTACAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAAGAAATTAAAGTTGCATATGTATCCATGTAACGTCATTTTGTGATTAATACCAGCTTTTTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329815" ref_strand="-" ref_description="SGN-E329815 [cTOD-3-D3]">
      <seq>caagagacacagagatagctatgggcgcgtatcaacctcatcacacttgggctatgaagaaaagacatccacatggccaggtatatggttatagaatgtctctatgggcagagcacatgggcaagttagacgatatcttcacaaagccagaaagtttgaactgcgtgaagcatgtaaatgaggttgctgaagataactggaaaagatttacagctcatgaattcaaacctttacaaggtcatcttctcaagtatcccgtccaagtaggtactgatgggcaagtaagttccttgcctggtcatgaatattttcctgatgttggtggtaaaatactaggagctcgaaccaatcttcctgatgctttaaccacataactcttcccgtcttccggttttgtaatgcctgtaaatcaaaccaatttcgtatagaattggtgagaataactagcagaattccaactcagtgagcaagaaatatatcatcttggttgctgtcgaagttgcgcatcatgtttactaatgttataccattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="4667" stop="3224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4367" g_stop="4288" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4287" i_stop="3979" i_length="309">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3978" g_stop="3524" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="535" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E329815" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329815" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4367" e_stop="4288"/>
          <exon e_start="3978" e_stop="3524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGACACAGAGATAGCTATGGGCGCGTATCAACCTCATCACACTTGGGCTATGAAGAAAAGACATCCACATGGCCAGGTCCGTGAATCTCCTTCCCCAAATAAAGCAAACTAGAACATTTTTGTTTTTGATCAAAAGTAGCAGGAAAATTTTTTTAGATCATGCTACCCTGTCTACATAAGAATCTTCTTGACATATCTGGTTAAAATTAACAACTACAGCTGAATGTAGAGGCGGATAGATCTTCTATTTGATTGGTTCAACCGAACTCAGTATTTTCAACATTGAACATAGATATTGATGTAAAAAAAATCAGTAACACTGCAATAAATGTTACGTTCTGAACACGTAAAAGTTGAAATCACGTTGATCCGCCTTTGGCTGCAGGTATATGGTTATAGAATGTCTCTATGGGCAGAGCACATGGGCAAGTTAGACGATATCTTCACAAAGCCAGAAAGTTTGAACTGCGTGAAGCATGTAAATGAGGTTGCTGAAGATAACTGGAAAAGATTTACAGCTCATGAATTCAAACCTTTACAAGGTCATCTTCTCAAGTATCCCGTCCAAGTAGGTACTGATGGGCAAGTAAGTTCCTTGCCTGGTCATGAATATTTTCCTGATGTTGGTGGTAAAATACTAGGAGCTCGAACCAATCTTCCTGATGCTTTAACCACATAACTCTTCCCGTCTTCCGGTTTTGTAATGCCTGTAAATCAAACCAATTTCGTATAGAATTGGTGAGAATAACTAGCAGAATTCCAACTCAGTGAGCAAGAAATATATCATCTTGGTTGCTGTCGAAGTTGCGCATCATGTTTACTAATGTTATACCATTCTTT</genome_strand>
        <mrna_strand>CAAGAGACACAGAGATAGCTATGGGCGCGTATCAACCTCATCACACTTGGGCTATGAAGAAAAGACATCCACATGGCCAG.....................................................................................................................................................................................................................................................................................................................GTATATGGTTATAGAATGTCTCTATGGGCAGAGCACATGGGCAAGTTAGACGATATCTTCACAAAGCCAGAAAGTTTGAACTGCGTGAAGCATGTAAATGAGGTTGCTGAAGATAACTGGAAAAGATTTACAGCTCATGAATTCAAACCTTTACAAGGTCATCTTCTCAAGTATCCCGTCCAAGTAGGTACTGATGGGCAAGTAAGTTCCTTGCCTGGTCATGAATATTTTCCTGATGTTGGTGGTAAAATACTAGGAGCTCGAACCAATCTTCCTGATGCTTTAACCACATAACTCTTCCCGTCTTCCGGTTTTGTAATGCCTGTAAATCAAACCAATTTCGTATAGAATTGGTGAGAATAACTAGCAGAATTCCAACTCAGTGAGCAAGAAATATATCATCTTGGTTGCTGTCGAAGTTGCGCATCATGTTTACTAATGTTATACCATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549333" ref_strand="+" ref_description="SGN-E549333 [TUS-69-H6]">
      <seq>cttttttccaccaccgttggctacggcggagacaccaaattttgttcatttttctcccttcccgtcggttaaccactccgccatagccggcggttacacgattcaccttcaacttttaatatatcacattgcctcaaggattgtttttgttttgtgtgtataaatttgtgtgtgtatatatatatatatatatcaatggcggatgagaattgtgaaaatgtggtatatcttcatggagactttgatttgaagattatagaagctcgaaggttacctaacatggatttagtaaccgaacgtctcagtcgatgctttacagctttagatatctgccggaaaccgtttactcgacggagaaggaaaggtcatcaccggaaaatcatcaccagtgatccgtatgtgacggtttgcttaaccggcgctactgtggcgcgtacgcgcgtgatatcgaattgtcaggatcctgtttggaacgagcattttaaaatcccgcttgctcatccggtttcggttgtagagtttctggttaaggataatgatgtattcggtgcggattatatcggagttgctaccgtgctggctgagaagatcaagtccggtgagctaattgatgattggtttcctataattggaccttatggaaaacctccgaaagctgattgtgcaattcggctgcaaatgagattcatacattgtgatggtaatccggcttataacgggcgtatatcagaagattttggcctgaaagcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="11456" stop="10078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11156" g_stop="10378" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E549333" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.036" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11156" e_stop="10378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTCCACCACCGTTGGCTACGGCGGAGACACCAATTTTTGTTCATTTTCCCCCCTTCCCGTCGGTTAACCACTCCGCCATAGCTGGCGGTTACACGATTCACCTTCAACTTTTTATATATCACATTGCCTCAAGGATCGTTTTTGTTTTGTGTGTGTAAATTTGTGTGTGTGTATATATATATATATATATATATATATATATATATATTATATATCAATGGCGGATGAGAATTGTGAAAATGTGGTATATCTTCATGGAGACTTTGATTTGAAGATTATAGAAGCTCGAAGGTTACCTAACATGGATTTAGTAACCGAACGTCTCAGTCGATGCTTTACAGCTTTAGATATCTGCCGGAAACCGTTTACTCGCCGGAGAAGGAAAGGTCATCGCCGGAAAATCATCACCAGTGATCCGTATGTGACGGTTTGCTTAACCGGCGCTACTGTGGCGCGTACGCGCGTGATATCGAATTGTCAGGATCCTGTTTGGAACGAGCATTTTAAAATCCCGCTTGCTCATCCGGTTTCGGTTGTAGAGTTTCTGGTTAAGGATAATGATGTATTCGGTGCGGATTATATCGGAGTTGCTACCGTGCTGGCTGAGAAGATCAAGTCCGGTGAGCTAATTGATGATTGGTTTCCTATAATTGGACCTTATGGAAAACCTCCAAAGCCTGATTGTGCAATTCGGCTGCAAATGAGATTCATACATTGTGATGGTAATCCGTCTTATAACGGCGGTATATCAGAAGATTTTGGCCTGAAAGCGAG</genome_strand>
        <mrna_strand>CTTTTTTCCACCACCGTTGGCTACGGCGGAGACACCAAATTTTGTTCATTTTTCTCCCTTCCCGTCGGTTAACCACTCCGCCATAGCCGGCGGTTACACGATTCACCTTCAACTTTTAATATATCACATTGCCTCAAGGATTGTTTTTGTTTTGTGTGTATAAA-TT-TGTGTGTG------------------------TATATATATATA-TATATATCAATGGCGGATGAGAATTGTGAAAATGTGGTATATCTTCATGGAGACTTTGATTTGAAGATTATAGAAGCTCGAAGGTTACCTAACATGGATTTAGTAACCGAACGTCTCAGTCGATGCTTTACAGCTTTAGATATCTGCCGGAAACCGTTTACTCGACGGAGAAGGAAAGGTCATCACCGGAAAATCATCACCAGTGATCCGTATGTGACGGTTTGCTTAACCGGCGCTACTGTGGCGCGTACGCGCGTGATATCGAATTGTCAGGATCCTGTTTGGAACGAGCATTTTAAAATCCCGCTTGCTCATCCGGTTTCGGTTGTAGAGTTTCTGGTTAAGGATAATGATGTATTCGGTGCGGATTATATCGGAGTTGCTACCGTGCTGGCTGAGAAGATCAAGTCCGGTGAGCTAATTGATGATTGGTTTCCTATAATTGGACCTTATGGAAAACCTCCGAAAGCTGATTGTGCAATTCGGCTGCAAATGAGATTCATACATTGTGATGGTAATCCGGCTTATAACGGGCGTATATCAGAAGATTTTGGCCTGAAAGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689092" ref_strand="+" ref_description="SGN-E689092 [t3_tus_80_B05]">
      <seq>gtttcctctgtaatggagtcgccgccgccgccgccgatgaaaaccacgaagcgcagagcagcagcaacaacgtcaattactggattaaccattgataattcagttcttcctatagaattaatagttgaaatactcataagattgcctgtaaaaacattgctgaagatgagatctgtttcaaaatcctggagttctctcatctcaactcccgaatttgtcaaagcacatgtaaaattttcagccaataatcgagaatttgctcaccacaggcttcttagtatcaggtcaggtactcacactcacgacgacggacgtactagtagatggaaaaatttccgcacatattctcttaatgcaatcctgtatggagaatctccctgtttacctgttgagcttcataattttggtataagttattatgttttgtgttcatgtgatggattgttcgttatttcaaaaacctggtataataatgacattgaggatctgtttctatggaatccgtctattagaaagttgagtaaacttccttattcaggaattgatgtgttcaatcgtagatttgcttatggatttggttatattgaatctcaaaatgattaccatattgttgaaattgtggcaagtaaacctagttatctcattgctgatattagtgtttatagtttaagaaataattcgtggaaaaccattcatgagttcccaagtatctctttgcctgaaaatgttaaatttattaaaggaaagttccattggatcactggtggtggtagtggtagtaacgcgacatggttcaaccccggagatgaggggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="23634" stop="25050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23934" g_stop="24750" g_length="817"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="817" r_length="817" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E689092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23934" e_stop="24750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCTCTGTAATGGAGTCGCCGCCGCCGCCGCCGATGAAAACCACGAAGCGCAGAGCAGCAGCAACAACGTCAATTACTGGATTAACCATTGATAATTCAGTTCTTCCTATAGAATTAATAGTTGAAATACTCATAAGATTGCCTGTAAAAACATTGCTGAAGATGAGATCTGTTTCAAAATCCTGGAGTTCTCTCATCTCAACTCCCGAATTTGTCAAAGCACATGTAAAATTTTCAGCCAATAATCGAGAATTTGCTCACCACAGGCTTCTTAGTATCAGGTCAGGTACTCACACTCACGACGACGGACGTACTAGTAGATGGAAAAATTTCCGCACATATTCTCTTAATGCAATCCTGTATGGAGAATCTCCCTGTTTACCTGTTGAGCTTCATAATTTTGGTATAAGTTATTATGTTTTGTGTTCATGTGATGGATTGTTCGTTATTTCAAAAACCTGGTATAATAATGACATTGAGGATCTGTTTCTATGGAATCCGTCTATTAGAAAGTTGAGTAAACTTCCTTATTCAGGAATTGATGTGTTCAATCGTAGATTTGCTTATGGATTTGGTTATATTGAATCTCAAAATGATTACCATATTGTTGAAATTGTGGCAAGTAAACCTAGTTATCTCATTGCTGATATTAGTGTTTATAGTTTAAGAAATAATTCGTGGAAAACCATTCATGAGTTCCCAAGTATCTCTTTGCCTGAAAATGTTAAATTTATTAAAGGAAAGTTCCATTGGATCACTGGTGGTGGTAGTGGTAGTAACGCGACATGGTTCAACCCCGGAGATGAGGGGTTTG</genome_strand>
        <mrna_strand>GTTTCCTCTGTAATGGAGTCGCCGCCGCCGCCGCCGATGAAAACCACGAAGCGCAGAGCAGCAGCAACAACGTCAATTACTGGATTAACCATTGATAATTCAGTTCTTCCTATAGAATTAATAGTTGAAATACTCATAAGATTGCCTGTAAAAACATTGCTGAAGATGAGATCTGTTTCAAAATCCTGGAGTTCTCTCATCTCAACTCCCGAATTTGTCAAAGCACATGTAAAATTTTCAGCCAATAATCGAGAATTTGCTCACCACAGGCTTCTTAGTATCAGGTCAGGTACTCACACTCACGACGACGGACGTACTAGTAGATGGAAAAATTTCCGCACATATTCTCTTAATGCAATCCTGTATGGAGAATCTCCCTGTTTACCTGTTGAGCTTCATAATTTTGGTATAAGTTATTATGTTTTGTGTTCATGTGATGGATTGTTCGTTATTTCAAAAACCTGGTATAATAATGACATTGAGGATCTGTTTCTATGGAATCCGTCTATTAGAAAGTTGAGTAAACTTCCTTATTCAGGAATTGATGTGTTCAATCGTAGATTTGCTTATGGATTTGGTTATATTGAATCTCAAAATGATTACCATATTGTTGAAATTGTGGCAAGTAAACCTAGTTATCTCATTGCTGATATTAGTGTTTATAGTTTAAGAAATAATTCGTGGAAAACCATTCATGAGTTCCCAAGTATCTCTTTGCCTGAAAATGTTAAATTTATTAAAGGAAAGTTCCATTGGATCACTGGTGGTGGTAGTGGTAGTAACGCGACATGGTTCAACCCCGGAGATGAGGGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239276" ref_strand="+" ref_description="SGN-E239276 [cLEL-9-I4](-)">
      <seq>ccaaaaaaaaaaaaaaaaaacgaaattcttagatatcaaggagttagggttacttattaatattgttgaagtcatattatatacttaattgggacatttgattttgtgttaaatgattatggactagttaagtggggaaaaaaccaagttgacttggttgagatttaagttttggtatgtttagtttgtaaaactatgttgtaagtgatcaaagattgtcatgataattgattttgaatgagaatgttattagccttgatttagttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="23548" stop="29838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26709" g_stop="26729" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26730" i_stop="29290" i_length="2561">
            <donor d_prob="0.409" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29291" g_stop="29537" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="268" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="269" polyA_stop="285"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E239276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26709" e_stop="26729"/>
          <exon e_start="29291" e_stop="29537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAACAGATAGAAAAATCGTATGCCTAACACGTCGCTTCTCATTTCAACTTTCTTACAAAATATCAAGCACTTGACATTTTAGAACTCTTAAAAAGAAAACAAATATGTCTAAGTCAAACTAAGATTATATTATCAAACCTTTTACGGCAAAAGAAATAAGCTAGTCCACGTATAATATAACAAATACATCTATTTCTATTATGTAAGAAGTGTATACATAAAATCAATAAAAATCTTCAACCAAGTCTATTAGGAGAACAAGTTTTAAATCAATGGTAAAGTCATTTTCGTAATACCTATAGATTATAGATTCGAGCTGTGAAATTAGTCGTTGATGCTTGCATAACTTTACCAAGCTGTTCAACTTTTAACTAATAGTCTATTTGGCAAAGCTTTCGGGAGGTCAAAAAATTTATTTGTTATTTTCGAAGGTGCTTTTATACATATGTAACTGCTTTTCAGAAGCTAAAAAGTAAATTTTTGTTAAAAACATTTTTTAGATAAATACAATTATAGTTTTTAAAAGTTTCATCAAACACTAATTATTCTTTAAAAATTTCTTGTCCCACAAATTATTTCTTATCAATTAAGAAAAAAATGGCCAAACAAATTACAAAGTTAATTACCTATCAAATTATGATTTTTATAAGACCCAAAGAAAATCACACATAAAAACAAAAGAAGCAAAAAATCTAGATAACTTGATATTCTCTTTATATATGTGGCTCCTATGTAACCAAAGTCTATCAAGTTGATTTTTATAGATACTCAATCCAATAGTGTCACAACCTCATATCAAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTGATTTAGTTGA</genome_strand>
        <mrna_strand>CCAAAAAAAAAAAAAAAAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTGATTTAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279629" ref_strand="+" ref_description="SGN-E279629 [cLER-5-K13]">
      <seq>tcaatccaatagtgtcacaacctcatatcaaactacatttccatttctccctttcttctaaacttgacatccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaagcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27181" stop="29196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27481" g_stop="28025" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="28896" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="574" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E279629" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27481" e_stop="28025"/>
          <exon e_start="28868" e_stop="28896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCCAATAGTGTCACAACCTCATATCAAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCAT</genome_strand>
        <mrna_strand>TCAATCCAATAGTGTCACAACCTCATATCAAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAAGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245827" ref_strand="+" ref_description="SGN-E245827 [cLEF-48-O10]">
      <seq>tcatatcaaactacatttccatttctccctttcttctaaacttgacatccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27203" stop="28302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27503" g_stop="28002" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E245827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27503" e_stop="28002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATCAAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCT</genome_strand>
        <mrna_strand>TCATATCAAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246787" ref_strand="+" ref_description="SGN-E246787 [cLEF-41-A1]">
      <seq>tcatatcaaactacatttccatttctccctttcttctaaacttgacatggctcttgcttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaatttttcgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27203" stop="28259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27503" g_stop="27959" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E246787" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27503" e_stop="27959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATCAAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTC</genome_strand>
        <mrna_strand>TCATATCAAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATGGCTCTTGCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTCGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554309" ref_strand="+" ref_description="SGN-E554309 [cTSC-3-O12]">
      <seq>aaactacatttccatttctccctttcttctaaacttgacatccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagaccacaaaatcgataaaaaattaatagtcctcgacgttggattgaagcattgtggaccatgtgtgaaagtttatccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27210" stop="29403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27510" g_stop="28025" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29103" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="752" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E554309" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27510" e_stop="28025"/>
          <exon e_start="28868" e_stop="29103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAAC</genome_strand>
        <mrna_strand>AAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342374" ref_strand="+" ref_description="SGN-E342374 [cTOF-8-L4]">
      <seq>aactacactttccatttctccctttcttctaaacttgacatccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27211" stop="29197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27511" g_stop="28025" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="28897" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="546" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E342374" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27511" e_stop="28025"/>
          <exon e_start="28868" e_stop="28897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTACA-TTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATG</genome_strand>
        <mrna_strand>AACTACACTTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413392" ref_strand="+" ref_description="SGN-E413392 [STM-17-H4]">
      <seq>tacatttctatttccccctttcttctaaacttgacatccctctttcttttgtggctattcttgaaaaaaaaattctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaatgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactcttgccggagggaaaagattgataaggtaccacatttcaacttctacaanagcatggagaagatccacgaggaagaagggcattgcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27214" stop="29230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27514" g_stop="28025" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="28930" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="576" r_length="63" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E413392" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27514" e_stop="28025"/>
          <exon e_start="28868" e_stop="28930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTC-TGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCG</genome_strand>
        <mrna_strand>TACATTTCTATTTCCCCCTTTCTTCTAAACTTGACATCCCTCTTTCTTTTGTGGCTATTCTTGAAAAAAAAATTCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAATGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTTGCCGGAGGGAAAAGATTGATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAANAGCATGGAGAAGATCCACGAGGAAGAAGGGCATTGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471953" ref_strand="+" ref_description="SGN-E471953 [cSTB-26-F16]">
      <seq>tacatttctatttccccctttcttctaaactggacatccctgtttcttttgtggctatccttgaaaaaaaaattctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgttatgatgtcgatttcttgttggtgatcggagatgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27214" stop="28282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27514" g_stop="27982" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E471953" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27514" e_stop="27982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAAC</genome_strand>
        <mrna_strand>TACATTTCTATTTCCCCCTTTCTTCTAAACTGGACATCCCTGTTTCTTTTGTGGCTATCCTTGAAAAAAAAATTCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTTATGATGTCGATTTCTTGTTGGTGATCGGAGATGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472131" ref_strand="+" ref_description="SGN-E472131 [cSTB-27-L1]">
      <seq>tacatttctatttccccctttcttctaaacttgacatccctctttcttttgtggctattcttgaaaaaaaaattctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatcctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27214" stop="28221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27514" g_stop="27921" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E472131" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27514" e_stop="27921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTA</genome_strand>
        <mrna_strand>TACATTTCTATTTCCCCCTTTCTTCTAAACTTGACATCCCTCTTTCTTTTGTGGCTATTCTTGAAAAAAAAATTCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616517" ref_strand="+" ref_description="SGN-E616517 [89984]">
      <seq>tttctattcccccctttcttctaaacttgacatccctctttcttttgtggctattcttgaaaaaataattctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattaacaaaaattaccccttcaatttactccaaatttcccttttgagaaaatcccaaacaatcaaattttcaaaggaacctcaaaacaaacaagcacttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagggaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaactagccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagatcacaaaatcgataaaaagttaatagtcctcgaatgttggattgaagcattgtggaccatgtgtgaaagtttatccaacgggtgatcaagctatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27218" stop="29419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27518" g_stop="28025" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29119" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="769" r_length="254" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E616517" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27518" e_stop="28025"/>
          <exon e_start="28868" e_stop="29119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATT-ACAAAAATTAGCCCTTCACTTTACTCC-AATTTCCCTTTTGAG-AAAT-CCAAACAATC-AATTTTC-AA-GAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCG-ACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAAC-AGTGATTAAGCTATCG</genome_strand>
        <mrna_strand>TTTCTATTCCCCCCTTTCTTCTAAACTTGACATCCCTCTTTCTTTTGTGGCTATTCTTGAAAAAATAATTCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTAACAAAAATTACCCCTTCAATTTACTCCAAATTTCCCTTTTGAGAAAATCCCAAACAATCAAATTTTCAAAGGAACCTCAAAACAAACAAGCACTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGGGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTAGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGATCACAAAATCGATAAAAAGTTAATAGTCCTCGAATGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACGGGTGATCAAGCTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320011" ref_strand="+" ref_description="SGN-E320011 [cTOB-31-O1]">
      <seq>ccatttctccctttcttctaaacttgacatccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27221" stop="29276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27521" g_stop="28025" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="28976" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="614" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E320011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27521" e_stop="28025"/>
          <exon e_start="28868" e_stop="28976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCG</genome_strand>
        <mrna_strand>CCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260165" ref_strand="+" ref_description="SGN-E260165 [cLEG-52-F15]">
      <seq>ccatttctccctttcttctaaacttgacatccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27221" stop="28273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27521" g_stop="27973" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E260165" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27521" e_stop="27973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGG</genome_strand>
        <mrna_strand>CCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256904" ref_strand="+" ref_description="SGN-E256904 [cLEG-44-C21]">
      <seq>ccatttctccctttcttctaaacttgacatccctcttccttttgtggctattcttgaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27221" stop="28264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27521" g_stop="27964" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E256904" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27521" e_stop="27964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTT</genome_strand>
        <mrna_strand>CCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTG-AAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320661" ref_strand="+" ref_description="SGN-E320661 [cTOB-27-M9]">
      <seq>ccatttctccctttcttctaaacttgacatccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagtttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27221" stop="28206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27521" g_stop="27906" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E320661" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27521" e_stop="27906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAG-TTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAA</genome_strand>
        <mrna_strand>CCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322953" ref_strand="+" ref_description="SGN-E322953 [cTOB-30-O2]">
      <seq>ccatttctccctttcttctaaacttgacatccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27221" stop="28149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27521" g_stop="27849" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E322953" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27521" e_stop="27849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATG</genome_strand>
        <mrna_strand>CCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470789" ref_strand="+" ref_description="SGN-E470789 [cSTB-20-F7]">
      <seq>atttccccctttcttctaaacttgacatccctctttcttttgtggctattcttgaaaaaaaaattctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27223" stop="28232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27523" g_stop="27932" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E470789" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27523" e_stop="27932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTA</genome_strand>
        <mrna_strand>ATTTCCCCCTTTCTTCTAAACTTGACATCCCTCTTTCTTTTGTGGCTATTCTTGAAAAAAAAATTCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730218" ref_strand="+" ref_description="SGN-E730218 [LA23BH01]">
      <seq>cccttcctttcttctaaacttgacatccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagaccacaaaatcgataaaaaattaatagtcctcgacgttggattgaagcattgtggaccatgtgtgaaagtttatccaacagtgattaagctatcgaaacagatggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27227" stop="29434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27525" g_stop="28025" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29134" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="768" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E730218" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27525" e_stop="28025"/>
          <exon e_start="28868" e_stop="29134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGAT</genome_strand>
        <mrna_strand>CCCTTCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730758" ref_strand="+" ref_description="SGN-E730758 [LA25AD09]">
      <seq>ctctctttcttctaaacttgacatccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagaccacaaaatcgataaaaaattaatagtcctcgacgttggattgaagcattgtggaccatgtgtgaaagtttatccaacagtgattaagctatcgaaacagatggctgatacagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27227" stop="29441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27527" g_stop="28025" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29141" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="773" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E730758" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27527" e_stop="28025"/>
          <exon e_start="28868" e_stop="29141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCG</genome_strand>
        <mrna_strand>CTCTCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403771" ref_strand="+" ref_description="SGN-E403771 [PPC-11-N11]">
      <seq>cccctttcttctaaacttgacatccctctttcttttgtggctattcttgaaaaaaaaattctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaatgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagggaaaagattgataaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggacctactagccggtgatgtactctactacggtgacagccactctgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagatcacaaaatcgataaaaaagtaatagtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27229" stop="29355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27528" g_stop="28025" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29055" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="686" r_length="188" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E403771" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27528" e_stop="28025"/>
          <exon e_start="28868" e_stop="29055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCT</genome_strand>
        <mrna_strand>CCCCTTTCTTCTAAACTTGACATCCCTCTTTCTTTTGTGGCTATTCTTGAAAAAAAAATTCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAATGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGGGAAAAGATTGATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCTACTAGCCGGTGATGTACTCTACTACGGTGACAGCCACTCTGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGATCACAAAATCGATAAAAAAGTAATAGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345081" ref_strand="+" ref_description="SGN-E345081 [cTOF-22-G18]">
      <seq>cctttcttctaaacttgacatccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccgggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagaaaagacgttgaaaaggtaatccaagaccacaaaatcgataaaaaattaatagtccctcgacgttggattgaagcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27230" stop="29376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27530" g_stop="28025" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29076" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="707" r_length="211" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E345081" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27530" e_stop="28025"/>
          <exon e_start="28868" e_stop="29076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCC-GGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGT-CCTCGACGTTGGATTGAAGCATTG</genome_strand>
        <mrna_strand>CCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAAAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCCTCGACGTTGGATTGAAGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359207" ref_strand="+" ref_description="SGN-E359207 [cLHT-11-L7]">
      <seq>tttcttctaaacttgacatccctcttccttttgtggctattcttgaaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattagaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgctcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccatgaggaagaaggcattggcccggaccaactagccggtgatgtactctacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27232" stop="29259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27532" g_stop="28025" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="28959" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="587" r_length="92" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E359207" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27532" e_stop="28025"/>
          <exon e_start="28868" e_stop="28959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTG-AAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTA</genome_strand>
        <mrna_strand>TTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAGAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGCTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCATGAGGAAGAAGGCATTGGCCCGGACCAACTAGCCGGTGATGTACTCTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473294" ref_strand="-" ref_description="SGN-E473294 [cSTB-31-J22]">
      <seq>atttttcgccttttttaatgcttcatccaattcctccatactattaaccttttgtactctttcactttgggccacttttttctcaacatcaggtgctgctgttgcctttgtaatcaataagggcttgtttgttttgaggttcttgaaaattgattgtttggatttctcaaaagggaaattggagtaaagtgaagggctaatttttgtaattgaagctagatttggagagggtttgagcaaaaaatttgtgagagtagccatagattaaagattttttttttcaagaatagccacaaaagaaagagggatgtcaagtttagaaaaaaaaaaaaaaaaactcgagactgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="28157" stop="27232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27857" g_stop="27532" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="338"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E473294" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473294" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27857" e_stop="27532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCGCATTTTTTAATGCTTCATCCAATTCCTCCATACTATTAACCTTTTGTACTCTTTCACTTTTAGCCACTTTTTTCTCAACATCAGGTGCTGCTGTTGCCTTTGTAATCAATAAGGGCTTGTTTGTTTTGAGGTTCTTGAAAATTGATTGTTTGGATTTCTCAAAAGGGAAATTGGAGTAAAGTGAAGGGCTAATTTTTGTAATTGAAGCTAGATTTGGAGAGGGTTTGAGCAAAAAATTTGTGAGAGTAGCCATAGATTAAAGATTTTTTTTTTCAAGAATAGCCACAAAAGGAAGAGGGATGTCAAGTTTAGAAGAAA</genome_strand>
        <mrna_strand>ATTTTTCGCCTTTTTTAATGCTTCATCCAATTCCTCCATACTATTAACCTTTTGTACTCTTTCACTTTGGGCCACTTTTTTCTCAACATCAGGTGCTGCTGTTGCCTTTGTAATCAATAAGGGCTTGTTTGTTTTGAGGTTCTTGAAAATTGATTGTTTGGATTTCTCAAAAGGGAAATTGGAGTAAAGTGAAGGGCTAATTTTTGTAATTGAAGCTAGATTTGGAGAGGGTTTGAGCAAAAAATTTGTGAGAGTAGCCATAGATTAAAGATTTTTTTTTTCAAGAATAGCCACAAAAGAAAGAGGGATGTCAAGTTTAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405475" ref_strand="+" ref_description="SGN-E405475 [PPC-18-K20]">
      <seq>ttctaaacttgacatccctctttcttttgtggctattcttgaaaaaaaaattctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaatgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagggaaaagattgataaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggacctactagccggtgatgtactctactacggtgacagccactctgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagatcacaaaatcgataaaaagttaatagtcctcgatgttggattgaagcattgtggacccatgtgtgaagtttatccaacagtgatcaagctatcgaagcagatggctgatacagtcgtgttcgcgagaatgaatggcgatgagaatgatagttgtatgcagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27236" stop="29489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27536" g_stop="28025" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29189" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="812" r_length="322" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E405475" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27536" e_stop="28025"/>
          <exon e_start="28868" e_stop="29189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGA-CCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTT</genome_strand>
        <mrna_strand>TTCTAAACTTGACATCCCTCTTTCTTTTGTGGCTATTCTTGAAAAAAAAATTCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAATGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGGGAAAAGATTGATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCTACTAGCCGGTGATGTACTCTACTACGGTGACAGCCACTCTGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGATCACAAAATCGATAAAAAGTTAATAGTCCTCGATGTTGGATTGAAGCATTGTGGACCCATGTGTG-AAGTTTATCCAACAGTGATCAAGCTATCGAAGCAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGCGATGAGAATGATAGTTGTATGCAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624074" ref_strand="+" ref_description="SGN-E624074 [GI|2582821]">
      <seq>aacttgacatccctctttcttttgtggctattcttgaaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaatgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagggaaaagattgataaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggacctactagccggtgatgtactctactacggtgacagccactctgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagatcacaaaatcgataaaaagttaatagtcctcgatgttggattgaagcattgtggaccatgtgtgaaagtttatccaacagtgatcaagctatcgaagcagatggctgatacagtcgtgttcgcgagaatgaatggcgatgagaatgatagttgtatgcagtttttgaaagacatggatgttattgaagtgcctacatttttgtttataagagatggtgagatttgtggaaggtatgttggttctggcaaaggtgaacttattggagaaattcttagataccaaggagttagggttacttattaaaattgttgaagttatattacaggacatttgatttgtgttaaatgattatgaactagttaagtggaaaaaaccaagttggcttggttgagattttaagttttggtatgtttagtttgtgaactatgttgtaagtgattaagattgtcatgataattgattttgaatgagaactatgttgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27241" stop="29821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27541" g_stop="28025" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29512" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="1117" r_length="631" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1128" polyA_stop="1149"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E624074" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>1130</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27541" e_stop="28025"/>
          <exon e_start="28868" e_stop="29512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGA-AAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGA-TTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGA</genome_strand>
        <mrna_strand>AACTTGACATCCCTCTTTCTTTTGTGGCTATTCTTGAAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAATGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGGGAAAAGATTGATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCTACTAGCCGGTGATGTACTCTACTACGGTGACAGCCACTCTGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGATCACAAAATCGATAAAAAGTTAATAGTCCTCGATGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATCAAGCTATCGAAGCAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGCGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACATTTTTGTTTATAAGAGATGGTGAGATTTGTGGAAGGTATGTTGGTTCTGGCAAAGGTGAACTTATTGGAGAAATTCTTAGATACCAAGGAGTTAGGGTTACTTATTAAAATTGTTGAAGT--TA-TAT-TAC---A---GGACATTTGA-TTTGTGTTAAATGATTATGAACTAGTTAAGT--GGAAAAAACCAAGTTGGCTTGGTTGAGATTTTAAGTTTTGGTATGTTTAGTTTGT-GAACTATGTTGTAAGTGAT-TAAGATTGTCATGATAATTGATTTTGAATGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692828" ref_strand="+" ref_description="SGN-E692828 [LH_Ea09L18]">
      <seq>catttaagagtctaacttgacatccctcttccttttgtggctcttcttgaaaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccatgaggaagaaggcattggcccggaccaactagccggtgatgtactctactacggtgacagccactccgaagtagttcagctccacagcagagacgacgttgaaaaggtaatccaagaccacaaaatcgataaaaaattaatagtcctcgacgttggattgaagcattgtggaccatgtgtgaaagtttatccaacagtgattaagctatcgaaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27237" stop="29425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27544" g_stop="28025" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="500" r_length="484" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29125" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="758" r_length="258" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E692828" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27544" e_stop="28025"/>
          <exon e_start="28868" e_stop="29125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACATCCCTCTTCCTTTTGTGGCTATTCTTG--AAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAG</genome_strand>
        <mrna_strand>TTGACATCCCTCTTCCTTTTGTGGCTCTTCTTGAAAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCATGAGGAAGAAGGCATTGGCCCGGACCAACTAGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTTCAGCTCCACAGCAGAGACGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265508" ref_strand="+" ref_description="SGN-E265508 [cLEI-14-I22]">
      <seq>gacatccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaattacccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27246" stop="28278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27546" g_stop="27978" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E265508" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27546" e_stop="27978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATG</genome_strand>
        <mrna_strand>GACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTACCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392376" ref_strand="+" ref_description="SGN-E392376 [TUS-35-L2]">
      <seq>acatccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcgtgttggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27247" stop="28270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27547" g_stop="27970" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E392376" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27547" e_stop="27970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGAT</genome_strand>
        <mrna_strand>ACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCGTGTTGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286745" ref_strand="+" ref_description="SGN-E286745 [cLES-14-P21]">
      <seq>catccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27248" stop="28281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27548" g_stop="27981" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E286745" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27548" e_stop="27981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAA</genome_strand>
        <mrna_strand>CATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204186" ref_strand="+" ref_description="SGN-E204186 [cLEC-13-E6]">
      <seq>catccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27248" stop="28109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27548" g_stop="27809" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E204186" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27548" e_stop="27809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAG</genome_strand>
        <mrna_strand>CATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726344" ref_strand="+" ref_description="SGN-E726344 [LA11CC01]">
      <seq>ctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagaccacaaaatcgataaaaaattaatagtcctcgacgttggattgaagcattgtggaccatgtgtgaaagtttatccaacagtgattaagctatcgaaacagatggctgatacagtcgtgttcgcgagaatgaatggtgatgagaatgatagttgtatgcagtttttgaaagacatggatgttattgaagtgcctacgtttttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27253" stop="29530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27553" g_stop="28025" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29230" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="836" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E726344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27553" e_stop="28025"/>
          <exon e_start="28868" e_stop="29230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTT</genome_strand>
        <mrna_strand>CTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623703" ref_strand="+" ref_description="SGN-E623703 [88798]">
      <seq>ctttcttttgtggctattcttgaaaaaaaaaaatctttaatctatggctactctcacaaattttttgcttaaaccctctccaaaatctagcttcaattacaaaaattagcccttcacttttactccaatttcccttttgaggaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcaaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttgagtaagacgtgtaacgatgttgatttcttgttggtgatcggagatgaaacggagaaaactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaactagccggtgatgtactctactacggtgacagccactctgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaaggatcacaaaatcgataaaaggttactagtcctcgacgttggattgaagcattgtggacccatgtgtgaaacgttttatccaacggtgaatcaagctatcgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27255" stop="29421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27555" g_stop="28025" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29122" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="735" r_length="260" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E623703" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27555" e_stop="28025"/>
          <exon e_start="28868" e_stop="29122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTTTGTGGCTATTCTTG-AAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAA-ATCTAGCTTCAATTACAAAAATTAGCCCTTCAC-TTTACTCCAATTTCCCTTTTGA-GAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAA-GACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGA-CCATGTGTGAAA-G-TTTATCCAACAGTG-ATTAAGCTATCGAAA</genome_strand>
        <mrna_strand>CTTTCTTTTGTGGCTATTCTTGAAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTTAAACCCTCTCCAAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTTACTCCAATTTCCCTTTTGAGGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCAAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTGAGTAAGACGTGTAACGATGTTGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAAACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTAGCCGGTGATGTACTCTACTACGGTGACAGCCACTCTGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGGATCACAAAATCGATAAAAGGTTACTAGTCCTCGACGTTGGATTGAAGCATTGTGGACCCATGTGTGAAACGTTTTATCCAACGGTGAATCAAGCTATCGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474540" ref_strand="+" ref_description="SGN-E474540 [cSTB-36-J18]">
      <seq>tttcttttgtggctattcttgaaaaaaaaattctttaatctatggctactctcaccaaattttttgctcaaacccctctccaaatctagcttcaattacaaaaattagccccttcactttactccaatttcccttttgagaaatcccaaccatcaattttcaagaacctcaaaacaaaccagcccttattgattaccaaggccaccagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtaccaaaagggtaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaaccgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaatgatgtcgatttcttgttggtgatcggagatgaaacggagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27256" stop="28289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27556" g_stop="27989" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E474540" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27556" e_stop="27989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCA-CAAATTTTTTGCTCAAA-CCCTCTCCAAATCTAGCTTCAATTACAAAAATTAG-CCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGG-CAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTA-CAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAAC-GTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAG</genome_strand>
        <mrna_strand>TTTCTTTTGTGGCTATTCTTGAAAAAAAAATTCTTTAATCTATGGCTACTCTCACCAAATTTTTTGCTCAAACCCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCCAACCATCAATTTTCAAGAACCTCAAAACAAACCAGCCCTTATTGATTACCAAGGCCACCAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACCAAAAGGGTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACCGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAATGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472558" ref_strand="+" ref_description="SGN-E472558 [cSTB-29-M7]">
      <seq>tttcttttgtggctattcttgaaaaaaaataattctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcacttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaacgatgtcgatttcttgttggtgatcggagatgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27256" stop="28282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27556" g_stop="27982" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E472558" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27556" e_stop="27982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTGTGGCTATTCTTGAAAAAAAA-AA-TCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAAC</genome_strand>
        <mrna_strand>TTTCTTTTGTGGCTATTCTTGAAAAAAAATAATTCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCACTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476788" ref_strand="+" ref_description="SGN-E476788 [cSTB-45-P20]">
      <seq>tttcttttgtggctattcttgaaaaaaaaattctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27256" stop="28222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27556" g_stop="27922" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E476788" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27556" e_stop="27922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTAT</genome_strand>
        <mrna_strand>TTTCTTTTGTGGCTATTCTTGAAAAAAAAATTCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410141" ref_strand="+" ref_description="SGN-E410141 [PPI-16-M5]">
      <seq>cttttgtggctattcttgaaaaaaaataattctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcacttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagggaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttagccggtgatgtactctactacggtgacagccacttccgaagtagtgcagctccacnagcagagaagacgttgaaaaggtaatccaagatcacaaaatcgataaaaagttaatagtcctcgatgttggatttgagcattgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27259" stop="29380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27559" g_stop="28025" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29080" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="685" r_length="216" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E410141" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27559" e_stop="28025"/>
          <exon e_start="28868" e_stop="29080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTGGCTATTCTTGAAAAAAAA-AA-TCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTT-GCCGGTGATGTACTCTACTACGGTGACAGCCAC-TCCGAAGTAGTGCAGCTCCAC-AGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGA</genome_strand>
        <mrna_strand>CTTTTGTGGCTATTCTTGAAAAAAAATAATTCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCACTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGGGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTAGCCGGTGATGTACTCTACTACGGTGACAGCCACTTCCGAAGTAGTGCAGCTCCACNAGCAGAGAAGACGTTGAAAAGGTAATCCAAGATCACAAAATCGATAAAAAGTTAATAGTCCTCGATGTTGGATTTGAGCATTGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472882" ref_strand="+" ref_description="SGN-E472882 [cSTB-30-O17]">
      <seq>cttttgtggctattcttgaaaaaaaataattctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcacttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27259" stop="28157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27559" g_stop="27857" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E472882" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27559" e_stop="27857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTGGCTATTCTTGAAAAAAAA-AA-TCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAAT</genome_strand>
        <mrna_strand>CTTTTGTGGCTATTCTTGAAAAAAAATAATTCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCACTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469247" ref_strand="+" ref_description="SGN-E469247 [cSTB-10-P14]">
      <seq>ggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27266" stop="28232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27566" g_stop="27932" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E469247" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27566" e_stop="27932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTA</genome_strand>
        <mrna_strand>GGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342489" ref_strand="+" ref_description="SGN-E342489 [cTOF-8-J1]">
      <seq>acttcttgaaaaaaaaaatctttaatctatggccacctctcacaaattttttgctcaaacccctcttccaaatctagcttcaattaccaaaaattagcccttcacctttaccttccaatttcccttttgagaaaatccaaaccaatcaattttcaagaaccctcaaaacaaacaagcccttattgattaccaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagaagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaattngcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaaacgatgtcgatttcttgnttggtgatcggagatgaaacggagaaaactaaggcactctgccggagagaaaaaattgacaaagtaccacattttcaacttctacaaaagcatggagaagaatcacgaggaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27271" stop="29219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27569" g_stop="28025" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="28919" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="524" r_length="53" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E342489" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27569" e_stop="28025"/>
          <exon e_start="28868" e_stop="28919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTTGAAAAAAAAAATCTTTAATCTATGGCTA-CTCTCACAAATTTTTTGCTCAAA-CCCTC-TCCAAATCTAGCTTCAATTA-CAAAAATTAGCCCTTCA-CTTTA-C-TCCAATTTCCCTTTTGAG-AAATCCAAA-CAATCAATTTTCAAGAA-CCTCAAAACAAACAAGCCCTTATTGATTA-CAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAG-AGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGT-AACGATGTCGATTTCTTG-TTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACA-TTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAG</genome_strand>
        <mrna_strand>ACTTCTTGAAAAAAAAAATCTTTAATCTATGGCCACCTCTCACAAATTTTTTGCTCAAACCCCTCTTCCAAATCTAGCTTCAATTACCAAAAATTAGCCCTTCACCTTTACCTTCCAATTTCCCTTTTGAGAAAATCCAAACCAATCAATTTTCAAGAACCCTCAAAACAAACAAGCCCTTATTGATTACCAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTNGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAAACGATGTCGATTTCTTGNTTGGTGATCGGAGATGAAACGGAGAAAACTAAGGCACTCTGCCGGAGAGAAAAAATTGACAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTTCAACTTCTACAAAAGCATGGAGAAGAATCACGAGGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344004" ref_strand="+" ref_description="SGN-E344004 [cTOF-12-M20]">
      <seq>ttgaaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagaccacaaaatcgataaaaaattaatagtccttcgacgttggattgaagcattgtggaccatgtgtggaaagtttatccaacagtgattaagctatcgaaacagatggctgatacagntcgtgttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27274" stop="29447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27574" g_stop="28025" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29147" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="736" r_length="283" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E344004" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27574" e_stop="28025"/>
          <exon e_start="28868" e_stop="29147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTG-AAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCC-TCGACGTTGGATTGAAGCATTGTGGACCATGTGT-GAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAG-TCGTGTTCG</genome_strand>
        <mrna_strand>TTGAAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGNTCGTGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319990" ref_strand="+" ref_description="SGN-E319990 [cTOB-31-E21]">
      <seq>aaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagaccacaaaatcgataaaaaattaatagtcctcgacgttggattgaagcattgtggaccatgtgtgaaagtttatccaacagtgattaagctatcgaaacagatggctgatacagtcgtgttcgcgagaatgaatggtgatgagaatgatagttgtatgcagtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27277" stop="29491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27577" g_stop="28025" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29191" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="773" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E319990" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27577" e_stop="28025"/>
          <exon e_start="28868" e_stop="29191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTG</genome_strand>
        <mrna_strand>AAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473971" ref_strand="+" ref_description="SGN-E473971 [cSTB-34-G14]">
      <seq>aaaaattctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaatgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagggaaaagattgataaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggacctactagccggtgatgtactctactacggtgacagccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27282" stop="29272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27581" g_stop="28025" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="28972" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="550" r_length="105" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E473971" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27581" e_stop="28025"/>
          <exon e_start="28868" e_stop="28972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCAC</genome_strand>
        <mrna_strand>AAAAATTCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAATGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGGGAAAAGATTGATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCTACTAGCCGGTGATGTACTCTACTACGGTGACAGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287394" ref_strand="+" ref_description="SGN-E287394 [cLES-15-I22]">
      <seq>aaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27283" stop="29312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27583" g_stop="28025" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29012" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="588" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E287394" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27583" e_stop="28025"/>
          <exon e_start="28868" e_stop="29012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAA</genome_strand>
        <mrna_strand>AAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474934" ref_strand="+" ref_description="SGN-E474934 [cSTB-38-O2]">
      <seq>aaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaactagccggtgatgtactctactacggtgacagccactctgaagtagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27283" stop="29285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27583" g_stop="28025" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="28985" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="561" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E474934" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27583" e_stop="28025"/>
          <exon e_start="28868" e_stop="28985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGC</genome_strand>
        <mrna_strand>AAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTAGCCGGTGATGTACTCTACTACGGTGACAGCCACTCTGAAGTAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467155" ref_strand="+" ref_description="SGN-E467155 [cSTB-42-B1]">
      <seq>aaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaactagccggtgatgtactctactacggtgacagccactctgaagtagtgcaactccacagcagagaagacgttgaaaaggtaatccaagatcacaaaatcgataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27284" stop="29341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27584" g_stop="28025" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29041" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="616" r_length="174" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E467155" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27584" e_stop="28025"/>
          <exon e_start="28868" e_stop="29041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAA</genome_strand>
        <mrna_strand>AAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTAGCCGGTGATGTACTCTACTACGGTGACAGCCACTCTGAAGTAGTGCAACTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGATCACAAAATCGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467328" ref_strand="+" ref_description="SGN-E467328 [cSTB-46-G2]">
      <seq>aaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaactagccggtgatgtactctactacggtgacagccactctgaagtagtgcagctccacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27284" stop="29296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27584" g_stop="28025" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="28996" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="571" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E467328" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27584" e_stop="28025"/>
          <exon e_start="28868" e_stop="28996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGC</genome_strand>
        <mrna_strand>AAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTAGCCGGTGATGTACTCTACTACGGTGACAGCCACTCTGAAGTAGTGCAGCTCCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467326" ref_strand="+" ref_description="SGN-E467326 [cSTB-46-E16]">
      <seq>aaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27284" stop="29202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27584" g_stop="28025" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="28902" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="477" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E467326" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27584" e_stop="28025"/>
          <exon e_start="28868" e_stop="28902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAA</genome_strand>
        <mrna_strand>AAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235411" ref_strand="+" ref_description="SGN-E235411 [cLED-11-J18]">
      <seq>ctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagaccacaaaatcgataaaaaattaatagtcctcgacgttggattgaagcattgtggaccatgtgtgaaagtttatccaacagtgattaagctatcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27295" stop="29421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27595" g_stop="28025" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29121" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="685" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E235411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27595" e_stop="28025"/>
          <exon e_start="28868" e_stop="29121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAA</genome_strand>
        <mrna_strand>CTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378066" ref_strand="+" ref_description="SGN-E378066 [TUS-21-N10]">
      <seq>ctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagaccccaaaatcgataaaaaaaattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27295" stop="29344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27595" g_stop="28025" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29052" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="615" r_length="184" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E378066" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27595" e_stop="28025"/>
          <exon e_start="28868" e_stop="29052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGT</genome_strand>
        <mrna_strand>CTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCCCAAAATCGATAAAAAA-AATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236458" ref_strand="+" ref_description="SGN-E236458 [cLED-13-N9]">
      <seq>ctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27295" stop="29283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27595" g_stop="28025" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="28983" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="547" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E236458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27595" e_stop="28025"/>
          <exon e_start="28868" e_stop="28983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGT</genome_strand>
        <mrna_strand>CTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473331" ref_strand="+" ref_description="SGN-E473331 [cSTB-32-A23]">
      <seq>caaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcacttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagggaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27310" stop="28317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27610" g_stop="28017" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E473331" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27610" e_stop="28017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGA</genome_strand>
        <mrna_strand>CAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCACTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGGGAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473413" ref_strand="+" ref_description="SGN-E473413 [cSTB-32-C24]">
      <seq>caaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcacttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaacgatgtcgatttcttgttggtgatcggagatgaaacgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27310" stop="28285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27610" g_stop="27985" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E473413" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27610" e_stop="27985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGA</genome_strand>
        <mrna_strand>CAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCACTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471344" ref_strand="+" ref_description="SGN-E471344 [cSTB-23-N23]">
      <seq>attttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcacttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggccaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaaggcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttccaaaaatatttatccttttatggtgaatttaagtaagacgtgtaacgatgtcgatttcttgttggtgatcggagatgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27313" stop="28282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27613" g_stop="27982" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E471344" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27613" e_stop="27982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAAC</genome_strand>
        <mrna_strand>ATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCACTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCCAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAAGGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCCAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACGTGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292725" ref_strand="+" ref_description="SGN-E292725 [cLET-11-J23]">
      <seq>ctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27321" stop="29205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27621" g_stop="28025" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="28905" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="443" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E292725" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27621" e_stop="28025"/>
          <exon e_start="28868" e_stop="28905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGAT</genome_strand>
        <mrna_strand>CTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296452" ref_strand="+" ref_description="SGN-E296452 [cLET-19-D3]">
      <seq>agcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagaccacaaaatcgataaaaaattaatagtcctcgacgttggattgaagcattgtggaccatgtgtgaaagtttatccaacagtgattaagctatcgaaacagatggctgatacagtcgtgttcgcgagaatgaatggtgatgagaatgatagttgtatgccgtttttgaaagacatggatgttattgaagtgcccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27461" stop="29519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27761" g_stop="28025" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29215" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="613" r_length="348" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E296452" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27761" e_stop="28025"/>
          <exon e_start="28868" e_stop="29215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTG</genome_strand>
        <mrna_strand>AGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCCGTTTTTGAAAGACATGGATGTTATTGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469242" ref_strand="-" ref_description="SGN-E469242 [cSTB-10-P4]">
      <seq>tctttcaaaaaccgcatacaactatcattctcatcgccattcattctcgcgaacacgactgtatcagccatctgcttcgatagcttgatcaccgttggataagctttcacacatggtccacaatgcttcaatccagcatcgaggactattgaccttttatcgattttgtgatcttggattaccttttcaacgtcttacttaaattcaccataaaaggataaatatttttggaacgttcactatctttgcctgcaaattcaaccacaactagtcgatttttcgccttttttaatgcttcatccaattcctccatacgattaaccttttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="29496" stop="27502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29196" g_stop="29006" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29005" i_stop="27941" i_length="1065">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27940" g_stop="27802" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="330" r_length="139" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E469242" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469242" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29196" e_stop="29006"/>
          <exon e_start="27940" e_stop="27802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCAAAAACTGCATACAACTATCATTCTCATCACCATTCATTCTCGCGAACACGACTGTATCAGCCATCTGTTTCGATAGCTTAATCACTGTTGGATAAACTTTCACACATGGTCCACAATGCTTCAATCCAACGTCGAGGACTATTAATTTTTTATCGATTTTGTGGTCTTGGATTACCTTTTCAACGTCTTCTCTGCTGTGGAGCTGCACTACTTCGGAGTGGCTGTCACCGTAGTAGAGTACATCACCGGCAAGTTGGTCCGGGCCAATGCCTTCTTCCTCGTGGATCTTCTCCATGCTTTTGTAGAAGTTGAAATGTGGTACCTATTGGGAAAAAAAGAGAGCTTATATTAGCTAAAATATTCCATTTATCTTTGAGTTTGATCGTAATTGATAACAATAGGGTTATATATGAGTCACTTTCATAACGAGGGGTATATCAGCTCATGACAAAGTTAAGGGGTATATATATCAGACCTTTTTCCCTACTATTATCAGATCGTGCACGTTATATGGGTGGAAGTTGTAGCAAGATAGTAAGGGTCATAGTGTGTTTAATACGGGTTCAATCGAAACTAGTAACTAATTTAGCCCATTCTATATATTTAATTCACTTAGTAAATTATACATATAAACTTCAAGTTTTGAACCAATAAATTTCAAATACTCGATCCACATCTGGTTATCAAAGAGATTATCTTAAGAAGGGGTTGTAGCTTTCTTTGATATGGATTCACTATACTTAGTATTATAATGCGAAATATATACACTACAAAAAAAACTATGAATTACATGGAGAATTTTCTGAGAATTAATATGAAAATTTACAGAAAAATAAAATTCACACTTTCTTTTTAGTGATACAAAAATCGCTAAAATTTTAATCAATATTATAGTTTTGAAGTTATGATTTCAAAATTGAACCTATCTATGGATCTAAGTCTAAATATTGAAATCGCCTCTTATCGAAAGCTAGATCTAGTCATACTCAATCCATTATATATATTAGATATACACCAATCTTTTTACTAATTAAGTTATATTTCATGTATATCTCCATCCATTTCAATGCAGGTAACATAAAGATCCACAAGTAATTATTTTTTTAAACTATCGTCACATAAATTGAAACAGACGTAATAATACGTGTGAATTTCTAAAATTACCTTGTCAATCTTTTCTCTCCGGCAGAGTGCCTTAGTCTTCTCCGTTTCATCTCCGATCACCAACAAGAAATCGACATCGTTACATGTCTTACTTAAATTCACCATAAAAGGATAAATATTTTTCGAACGTTCACTATCTTTGCCTGCAAATTCAACCACAACTAGTCGATTTTTCGCATTTTTTAATGCTTCATCCAATTCCTCCATACTATTAACCTTTTGTA</genome_strand>
        <mrna_strand>TCTTTCAAAAACCGCATACAACTATCATTCTCATCGCCATTCATTCTCGCGAACACGACTGTATCAGCCATCTGCTTCGATAGCTTGATCACCGTTGGATAAGCTTTCACACATGGTCCACAATGCTTCAATCCAGCATCGAGGACTATTGACCTTTTATCGATTTTGTGATCTTGGATTACCTTTTCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTACTTAAATTCACCATAAAAGGATAAATATTTTTGGAACGTTCACTATCTTTGCCTGCAAATTCAACCACAACTAGTCGATTTTTCGCCTTTTTTAATGCTTCATCCAATTCCTCCATACGATTAACCTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296386" ref_strand="-" ref_description="SGN-E296386 [cLET-19-J15](-)">
      <seq>gtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagaccacaaaatcgataaaaaattaatagtcctcgacgttggattgaagcattgtggaccatgtgtgaaagtttatccaacagtgattaagctatcgaaacagatggctgatacagtcgtgttcgcgagaatgaatggtgatgagaatgatagttgtatgcagtttttgaaagacatggatgttattgaagtgcctacgtttttgtttataagagatggtgaaatttgtggaaggtatgttggttctgggaaaggtgaacttattggagaaattcttagatatcaaggagttagggttacttattaatattgttgaagtcatattatatacttaattgggacatttgattttgtgttaaatgattatggactagttaagtgggggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27567" stop="29711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27867" g_stop="28025" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29411" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="703" r_length="544" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E296386" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296386" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27867" e_stop="28025"/>
          <exon e_start="28868" e_stop="29411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAA</genome_strand>
        <mrna_strand>GTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296528" ref_strand="+" ref_description="SGN-E296528 [cLET-19-J15]">
      <seq>gtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagaccacaaaatcgataaaaaattaatagtcctcgacgttggattgaagcattgtggaccatgtgtgaaagtttatccaacagtgattaagctatcgaaacagatggctgatacagtcgtgttcgcgagaatgaatggtgatgagaatgatagttgtatgcagtttttgaaagacatggatgttattgaagtgcctacgtttttgtttataagagatggtgaaatttgtggaaggtatgttggttctgggaaaggtgaacttattggagaaattcttagatatcaaggagttagggttacttattaatattgttgaagtcatattatatacttaattgggacatttgattttgtgttaaatgattatggactagttaagtgggggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27567" stop="29711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27867" g_stop="28025" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29411" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="703" r_length="544" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E296528" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27867" e_stop="28025"/>
          <exon e_start="28868" e_stop="29411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAA</genome_strand>
        <mrna_strand>GTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297533" ref_strand="+" ref_description="SGN-E297533 [cLET-28-J10]">
      <seq>gcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagaccacaaaatcgataaaaaattaatagtcctcgacgttggattgaagcattgtggaccatgtgtgaaagtttatccaacagtgattaagctatcgaaacagatggctgatacagtcgtgttcgcgagaatgaatggtgatgagaatgatagttgtatgcagtttttgaaagacatggatgttattgaagtgcctacgtttttgtttataagagatggtgaaatttgtggaaggtatgttggttctgggaaaggtgaacttattggagaaattcttagatatcaaggagttagggttacttattaatattgttgaagtcatattatatacttaattgggacatttgattttgtgttaaatgattatggactagttaagtggggaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27583" stop="29713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27883" g_stop="28025" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29413" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="689" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E297533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27883" e_stop="28025"/>
          <exon e_start="28868" e_stop="29413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAAC</genome_strand>
        <mrna_strand>GCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696668" ref_strand="+" ref_description="SGN-E696668 [LH_Ea09L18](-)">
      <seq>ttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccatgaggaagaaggcattggcccggaccaactagccggtgatgtactttattacggtgacagccactccgaagtagttcagctccacagcagagacgacgttgaaaaggtaatccaagtccacaaaatcgataaaaaattaatagtcctcgacgttggattgaagcattgtgggccatgtgtgaaagtttatccaacagtgattaagctatcgaaacagatggctgatacagttgtgttcgcgagaatgaatggtgatgagaatgatagttgtatgcagtttttgaaagacatggatgttattgaagtgcctacgtttttgtttataagagatggtgaaatttgtggaaggtatgttggttttgggaaaggtgaacttattggagaaatttttagatatcaaggagttagggttacttattaatattgttgaagtcatattatatacttaattgggacatttgatttgtgttaaatgattatggactagttaagtgggggaaaaaccaagttgacttggttgagatttaagttttggtatgtttagtttgtaaaactatgttgtaagtgatcaagattgtaagggtaattgattttgaatgggacaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27617" stop="29812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27917" g_stop="28025" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29512" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="752" r_length="643" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="754" polyA_stop="773"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E696668" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27917" e_stop="28025"/>
          <exon e_start="28868" e_stop="29512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGA</genome_strand>
        <mrna_strand>TTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCATGAGGAAGAAGGCATTGGCCCGGACCAACTAGCCGGTGATGTACTTTATTACGGTGACAGCCACTCCGAAGTAGTTCAGCTCCACAGCAGAGACGACGTTGAAAAGGTAATCCAAGTCCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGGCCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTTGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTTTGGGAAAGGTGAACTTATTGGAGAAATTTTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGA-TTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGGAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATC-AAGATTGTAAGGGTAATTGATTTTGAATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732721" ref_strand="+" ref_description="SGN-E732721 [LB02DG10]">
      <seq>ctgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagaccacaaaatcgataaaaaattaatagtcctcgacgttggattgaagcattgtggaccatgtgtgaaagtttatccaacagtgattaagctatcgaaacagatggctgatacagtcgtgttcgcgagaatgaatggtgatgagaatgatagttgtatgcagtttttgaaagacatggatgttattgaagtgcctacgtttttgtttataagagatggtgaaatttgtggaaggtatgttggttctgggaaaggtgaacttattggagaaattcttagatatcaaggagttagggttacttattaatattgttgaagtcatattatatacttaattgggacatttgattttgtgttaaatgattatggactagttaagtggggaaaaaaccaagttgacttggttgagatttaagttttggtatgtttagtttgtaaaactatgttgtaagtgatcaaagattgtcatgataattgattttgaatgagaatgttattagccttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27661" stop="29828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27960" g_stop="28025" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29531" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="730" r_length="664" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E732721" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27960" e_stop="28025"/>
          <exon e_start="28868" e_stop="29531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTGATTT</genome_strand>
        <mrna_strand>CTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459764" ref_strand="+" ref_description="SGN-E459764 [cPRO-28-J12]">
      <seq>gaaacggagaagactaaggcactctgccggagggaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaactagccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagatcacaaaatcgataaaaagttaatagtcctcgatgttggattgaagcattgtggaccatgtgtgaaagtttatccaacggtgatcaagctatcgaagcagatggctgatacagtcgtgttcgcgagaatgaatggcgatgagaatgatagttgtatgcagtttttgaaagacatggatgttattgaagtgcctacatttttgtttataagagatggtgagatttgtggaaggtatgttggttctgggaaaggtgaacttattggagaaattcttagataccaaggagttagggttacttattaaacttatatactcaattgggacatttgaattgtgtaaatgattatggggacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27678" stop="29635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27978" g_stop="28025" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29343" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="523" r_length="475" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E459764" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27978" e_stop="28025"/>
          <exon e_start="28868" e_stop="29343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCA</genome_strand>
        <mrna_strand>GAAACGGAGAAGACTAAGGCACTCTGCCGGAGGGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTAGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGATCACAAAATCGATAAAAAGTTAATAGTCCTCGATGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACGGTGATCAAGCTATCGAAGCAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGCGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACATTTTTGTTTATAAGAGATGGTGAGATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATACCAAGGAGTTAGGGTTACTTATTAA-ACTTATATACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613859" ref_strand="+" ref_description="SGN-E613859 [63639]">
      <seq>agaagatccacgaggaagaaggcattggcccggaccaactagccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagatcacaaaatcgataaaaagttaatagtcctcgatgttggattgaagcattgtggaccatgtgtgaaagtttatccaacggtgatcaagctatcgaagcagatggctgatacagtcgtgttcgcgagaatgaatggcgatgagaatgatagttgtatgcagtttttgaaagacatggatgttattgaagtgcctacatttttgtttataagagatggtgagatttgtggaaggtatgttggttctgggaaaggtgaacttattggagaaattcttagataccaaggagttagggttacttattaaacttatatactcaattgggacatttgaattgtgttaaatgattatggggactagttaagtgggaaaaaaaccaagttgagttggttgagatttaagttttggtatgtttagtttgtgaactatgttgtaagtgattaagattgtcatgataattgattttgaatgagaatgttcttagttaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="28599" stop="29822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28899" g_stop="29531" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E613859" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28899" e_stop="29531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTAT--GGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTGATTT</genome_strand>
        <mrna_strand>AGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTAGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGATCACAAAATCGATAAAAAGTTAATAGTCCTCGATGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACGGTGATCAAGCTATCGAAGCAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGCGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACATTTTTGTTTATAAGAGATGGTGAGATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATACCAAGGAGTTAGGGTTACTTA-T--TA------AA--C---TTATATACTCAATTGGGACATTTGA-ATTGTGTTAAATGATTATGGGGACTAGTTAAGTGGGAAAAAAACCAAGTTGAGTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGT-GAACTATGTTGTAAGTGAT-TAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTCTTAG--TTAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413393" ref_strand="+" ref_description="SGN-E413393 [STM-17-H4]">
      <seq>caaattcttttttatcatgacaatcttaatcatttacacacatagttcacaaactaaacataccaaaacttaaaatctcaaccaagccaacttggttttttccacttaactagttcataatcatttaacacaaatcaaatgtcctgtaatataacttcaacaattttaataagtaaccctaactccttggtatctaagaatttctccaataagttcacctttcccagaaccaacataccttccacaaatctcaccatctctttataaacaaaaatgtaggcacttcaataacatccatgtctttcaaaaactgcatacaactatcattctcatcgccattcattctcgcgaacacgactgtatcagccatctgcttcgatagcttgatcactgttggataaactttcacacatggtccacaatgcttcaatccaacatcgaggactattaactttttatcgattttgtgatcttggattaccttttcaacgtcttctctgctgtggagctgcactacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="29796" stop="28676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29505" g_stop="28976" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E413393" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29505" e_stop="28976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCAATT--ATCATGACAATCTTTGATCACTTACA-ACATAGTTTTACAAACTAAACATACCAAAACTT-AAATCTCAACCAAGTCAACTTGGTTTTTTCCCCACTTAACTAGTCCATAATCATTTAACACAAAATCAAATGTCCCAATTAAGTATATAATATGACTTCAACAATATTAATAAGTAACCCTAACTCCTTGATATCTAAGAATTTCTCCAATAAGTTCACCTTTCCCAGAACCAACATACCTTCCACAAATTTCACCATCTC-TTATAAACAAAAACGTAGGCACTTCAATAACATCCATGTCTTTCAAAAACTGCATACAACTATCATTCTCATCACCATTCATTCTCGCGAACACGACTGTATCAGCCATCTGTTTCGATAGCTTAATCACTGTTGGATAAACTTTCACACATGGTCCACAATGCTTCAATCCAACGTCGAGGACTATTAATTTTTTATCGATTTTGTGGTCTTGGATTACCTTTTCAACGTCTTCTCTGCTGTGGAGCTGCACTACTTC</genome_strand>
        <mrna_strand>CAAATTCTTTTTTATCATGACAATC-TTAATCATTTACACACATAG-TTCACAAACTAAACATACCAAAACTTAAAATCTCAACCAAGCCAACTTGGTTTTTT--CCACTTAACTAGTTCATAATCATTTAACAC-AAATCAAATGT-CC---T--GTA-AT-ATA--ACTTCAACAATTTTAATAAGTAACCCTAACTCCTTGGTATCTAAGAATTTCTCCAATAAGTTCACCTTTCCCAGAACCAACATACCTTCCACAAATCTCACCATCTCTTTATAAACAAAAATGTAGGCACTTCAATAACATCCATGTCTTTCAAAAACTGCATACAACTATCATTCTCATCGCCATTCATTCTCGCGAACACGACTGTATCAGCCATCTGCTTCGATAGCTTGATCACTGTTGGATAAACTTTCACACATGGTCCACAATGCTTCAATCCAACATCGAGGACTATTAACTTTTTATCGATTTTGTGATCTTGGATTACCTTTTCAACGTCTTCTCTGCTGTGGAGCTGCACTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219741" ref_strand="+" ref_description="SGN-E219741 [cLEL-24-G5](-)">
      <seq>gtcgtgttcgcgagaatgaatggtgatgagaatgatagttgtatgcagtttttgaaagacatggatgttattgaagtgcctacgtttttgtttataagagatggtgaaatttgtggaaggtatgttggttctgggaaaggtgaacttattggagaaattcttagatatcaaggagttagggttacttattaatattgttgaagtcatattatatacttaattgggacatttgattttgtgttaaatgattatggactagttaagtggggaaaaaaccaagttgacttggttgagatttaagttttggtatgtttagtttgtaaaactatgttgtaagtgatcaaagattgtcatgataattgattttgaatgagaatgttattagccctgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="28838" stop="29828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29138" g_stop="29527" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="391" polyA_stop="412"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E219741" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29138" e_stop="29527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTG</genome_strand>
        <mrna_strand>GTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612373" ref_strand="+" ref_description="SGN-E612373 [62135]">
      <seq>gaatgaatggcgatgagaatgatagttgtatgcagtttttgaaagacatggatgttattgaagtgcctacatttttgtttataagagatggtgagatttgtggaaggtatgttggttctgggaaaggtgaacttattggagaaattcttagataccaaggagttagggttacttattaaacttatatactcaattgggacatttgaattgtgttaaatgattatggggactagttaagtgggaaaaaaaccaagttgagttggttgagatttaagttttggtatgtttagtttgtgagctatgttgtaagtgattaagattgtcatgataattgattttgaatgagaatgttcttagttaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="28851" stop="29822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29151" g_stop="29521" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="373"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E612373" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29151" e_stop="29521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTAT--GGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTA</genome_strand>
        <mrna_strand>GAATGAATGGCGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACATTTTTGTTTATAAGAGATGGTGAGATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATACCAAGGAGTTAGGGTTACTTA-T--TA------AA--C---TTATATACTCAATTGGGACATTTGA-ATTGTGTTAAATGATTATGGGGACTAGTTAAGTGGGAAAAAAACCAAGTTGAGTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGT-GAGCTATGTTGTAAGTGAT-TAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219981" ref_strand="+" ref_description="SGN-E219981 [cLEL-24-G5](-)">
      <seq>gatgagaatgatagttgtatgcagtttttgaaagacatggatgttattgaagtgcctacgtttttgtttataagagatggtgaaatttgtggaaggtatgttggttctgggaaaggtgaacttattggagaaattcttagatatcaaggagttagggttacttattaatattgttgaagtcatattatatacttaattgggacatttgattttgtgttaaatgattatggactagttaagtggggaaaaaaccaagttgacttggttgagatttaagttttggtatgtttagtttgtaaaactatgttgtaagtgatcaaagattgtcatgataattgattttgaatgagaatgttattagccttgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="28862" stop="29828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29162" g_stop="29527" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="367" polyA_stop="388"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E219981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29162" e_stop="29527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTG</genome_strand>
        <mrna_strand>GATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239060" ref_strand="+" ref_description="SGN-E239060 [cLEL-9-I4](-)">
      <seq>aaaaaaaaaaaaaaaaacgaaattcttagatatcaaggagttagggttacttattaatattgttgaagtcatattatatacttaattgggacatttgattttgtgttaaatgattatggactagttaagtggggaaaaaaccaagttgacttggttgagatttaagttttggtatgtttagtttgtaaaactatgttgtaagtgatcaaagattgtcatgataattgattttgaatgagaatgttattagccttgatttagttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="23550" stop="29838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29273" g_stop="29537" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="266" polyA_stop="282"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E239060" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29273" e_stop="29537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTGATTTAGTTGA</genome_strand>
        <mrna_strand>AAAAAAAAAAAAAAAAACGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTGATTTAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722278" ref_strand="+" ref_description="SGN-E722278 [FC16DB07]">
      <seq>gaatcatttcaacaccaaaaaagctaagatatatttttgttcttcatatcaacaccaacaaaaaagtacaaaaatggagaaggaaaaaccaagcaagccaaagaaaaacatgattttgaaatttttaccaaaagcagcagcagcaaccgttatattccaaaaccacccttttagtccaggtagagataaaagattacatcataatcacaaaggattttctggtccaattatatctataattccagctgaagcgagaattagaaaatcgaatagcgaaacaaaggaagaagaaccaacatcaccaaaagtttcgtgcattggtcagatcaaacagaggaagaaactcaataaacccaggaaaacggaacgcccaaaatcactcgaaaaaaaatcatccaattttaaaaatatctttcaaagacggagaaaaaccgatgttgataaaaatgaaacaaatatgagatgcgaggtacaaaacagagcaccaccctgtttgagtcaaatgaggaaatatgctagtggtcgtgaaggtaatttatcgaatttcgattggaaaaacgtgcagattacacctgatgatcatcggaaatattactccgatgatgatagagatgattatcatgaagctgaagatgaagatgaggtaataattccattttcagctccaattttaataggaagagataatagaccaaattttactttggagccaaaaaaggaaattaatttatggaaaagaagaactatgactaaaccaaatcctcttcaattgaagaaataagttttgtttagttgatttaagcttagaattagtttacaaatcatcatgttgtaaactatgatgcaagtgtaacaatattttcaagaaatcaactattcaataatatagtttagtttaacatgttttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="30763" stop="32275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31062" g_stop="31975" g_length="914"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="912" r_length="912" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E722278" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31062" e_stop="31975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCATTTCAACACCAAAAAAGCTAAGATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGCTAGTGGTCGTGAAGGTAATTTATCGAATTTCGATTGGAAAAACGTGCAGATTACACCTGATGATCATCGGAAATATTACTCCGATGATGATAGAGATGATTATCATGAAGCTGAAGATGAAGATGAGGTAATAATTCCATTTTCAGCTCCAATTTTAATAGGAAGAGATAATAGACCAAATTTTACTTTGGAGCCAAAAAAGGAAATTAATTTATGGAAAAGAAGAACTATGACTAAACCAAATCCTCTTCAATTGAAGAAATAAGTTTTGTTTAGTTGATTTAAGCTTAGAATTAGTTTACAAATCATCATGTTGTAAACTATGATGCAAGTGTAACAATATTTTCAAAGAATTCAACTATTCAAGTAATATAGTTTAGTTTAACATGTTTTATTTT</genome_strand>
        <mrna_strand>GAATCATTTCAACACCAAAAAAGCTAAGATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGCTAGTGGTCGTGAAGGTAATTTATCGAATTTCGATTGGAAAAACGTGCAGATTACACCTGATGATCATCGGAAATATTACTCCGATGATGATAGAGATGATTATCATGAAGCTGAAGATGAAGATGAGGTAATAATTCCATTTTCAGCTCCAATTTTAATAGGAAGAGATAATAGACCAAATTTTACTTTGGAGCCAAAAAAGGAAATTAATTTATGGAAAAGAAGAACTATGACTAAACCAAATCCTCTTCAATTGAAGAAATAAGTTTTGTTTAGTTGATTTAAGCTTAGAATTAGTTTACAAATCATCATGTTGTAAACTATGATGCAAGTGTAACAATATTTTC-AAGAAATCAACTATTCAA-TAATATAGTTTAGTTTAACATGTTTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241433" ref_strand="+" ref_description="SGN-E241433 [cLED-28-N12]">
      <seq>aaaaagctaagatatatttttgttcttcatatcaacaccaacaaaaaagtacaaaaatggagaaggaaaaaccaagcaagccaaagaaaaacatgattttgaaatttttaccaaaagcagcagcagcaaccgttatattccaaaaccacccttttagtccaggtagagataaaagattacatcataatcacaaaggattttctggtccaattatatctataattccagctgaagcgagaattagaaaatcgaatagcgaaacaaaggaagaagaaccaacatcaccaaaagtttcgtgcattggtcagatcaaacagaggaagaaactcaataaacccaggaaaacggaacgcccaaaatcactcgaaaaaaaatcatccaattttaaaaatatctttcaaagacggagaaaaaccgatgttgataaaaatgaaacaaatatgagatgcgaggtacaaaacagagcaccaccctgtttgagtcaaatgaggaaatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="30779" stop="31877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31079" g_stop="31577" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E241433" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31079" e_stop="31577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTAAGATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGC</genome_strand>
        <mrna_strand>AAAAAGCTAAGATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239968" ref_strand="+" ref_description="SGN-E239968 [cLED-29-J7]">
      <seq>aaagctaagatatatttttgttcttcatatcaacaccaacaaaaaagtacaaaaatggagaaggaaaaaccaagcaagccaaagaaaaacatgattttgaaatttttaccaaaagcagcagcagcaaccgttatattccaaaaccacccttttagtccaggtagagataaaagattacatcataatcacaaaggattttctggtccaattatatctataattccagctgaagcgagaattagaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="30781" stop="31628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31081" g_stop="31328" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E239968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31081" e_stop="31328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTAAGATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATC</genome_strand>
        <mrna_strand>AAAGCTAAGATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237930" ref_strand="+" ref_description="SGN-E237930 [cLED-18-A20]">
      <seq>gctaagatatatttttgttcttcatatcaacaccaacaaaaaagtacaaaaatggagaaggaaaaaccaagcaagccaaagaaaaacatgattttgaaatttttaccaaaagcagcagcagcaaccgttatattccaaaaccacccttttagtccaggtagagataaaagattacatcataatcacaaaggattttctggtccaattatatctataattccagctgaagcgagaattagaaaatcgaatagcgaaacaaaggaagaagaaccaacatcaccaaaagtttcgtgcattggtcagatcaaacagaggaagaaactcaataaacccaggaaaacggaacgcccaaaatcactcgaaaaaaaatcatccaattttaaaaatatctttcaaagacggagaaaaaccgatgttgataaaaatgaaacaaatatgagatgcgaggtacaaaacagagcaccaccctgtttgagtcaaatgaggaaatatgctagtggtcgtgaaggtaatttatcgaatttcgattggaaaaacgtgcagattacacctgatgataatcggaaatattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="30784" stop="31956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31084" g_stop="31656" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E237930" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31084" e_stop="31656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAGATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGCTAGTGGTCGTGAAGGTAATTTATCGAATTTCGATTGGAAAAACGTGCAGATTACACCTGATGATCATCGGAAATATTAC</genome_strand>
        <mrna_strand>GCTAAGATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGCTAGTGGTCGTGAAGGTAATTTATCGAATTTCGATTGGAAAAACGTGCAGATTACACCTGATGATAATCGGAAATATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368093" ref_strand="+" ref_description="SGN-E368093 [TUS-22-K4]">
      <seq>taagatatatttttgttcttcatatcaacaccaacaaaaaagtacaaaaatggagaaggaaaaaccaagcaagccaaagaaaaacatgattttgaaatttttaccaaaagcagcagcagcaaccgttatattccaaaaccacccttttagtccaggtagagataaaagattacatcataatcacaaaggattttctggtccaattatatctataattccagctgaagcgagaattagaaaatcgaatagcgaaacaaaggaagaagaaccaacatcaccaaaagtttcgtgcattggtcagatcaaacagaggaagaaactcaataaacccaggaaaacggaacgcccaaaatcactcgaaaaaaaatcatccaattttaaaaatatctttcaaagacggagaaaaaccgatgttgataaaaatgaaacaaatatgagatgcgaggtacaaaacagagcaccaccctgtttgagtcaaatgaggaaatatgctagtggtcgtgaaggtaatttatcgaatttcgattggaaaaacgtgcagattacacctgatgatcatcggaaatattactccgatgatgatagagatgattatcatgaagctgaagatgaagatgaggtaataattccattttcagctccaattttaataggaagagataatagaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="30786" stop="32057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31086" g_stop="31757" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E368093" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31086" e_stop="31757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGCTAGTGGTCGTGAAGGTAATTTATCGAATTTCGATTGGAAAAACGTGCAGATTACACCTGATGATCATCGGAAATATTACTCCGATGATGATAGAGATGATTATCATGAAGCTGAAGATGAAGATGAGGTAATAATTCCATTTTCAGCTCCAATTTTAATAGGAAGAGATAATAGACCAAA</genome_strand>
        <mrna_strand>TAAGATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGCTAGTGGTCGTGAAGGTAATTTATCGAATTTCGATTGGAAAAACGTGCAGATTACACCTGATGATCATCGGAAATATTACTCCGATGATGATAGAGATGATTATCATGAAGCTGAAGATGAAGATGAGGTAATAATTCCATTTTCAGCTCCAATTTTAATAGGAAGAGATAATAGACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237504" ref_strand="+" ref_description="SGN-E237504 [cLED-19-I24]">
      <seq>taagatatatttttgttcttcatatcaacaccaacaaaaaagtacaaaaatggagaaggaaaaaccaagcaagccaaagaaaaacatgattttgaaatttttaccaaaagcagcagcagcaaccgttatattccaaaaccacccttttagtccaggtagagataaaagattacatcataatcacaaaggattgtctggtccaattatatctataattccagctgaagcgagaattagaaaatcgaatagcgaaacataggaagaagaaccaacatcaccaaaagtttcgtgcattggtcagatcaaacagaggaagaaactcaataaacccaggaaaacggaacgcccaaaatcactcgaaaaaaaatcatccaattttaaaaatatctttcaaagacggagaaaaaccgatgttgataaaaatgaaacaaatatgagatgcgaggtacaaaacagagcaccaccctgtttgagtcaaatgaggaaatatgctagtggtcgtgaaagtaatttatcgaatttcgattggaaaaacgtgcagattacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="30786" stop="31934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31086" g_stop="31634" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E237504" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31086" e_stop="31634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGCTAGTGGTCGTGAAGGTAATTTATCGAATTTCGATTGGAAAAACGTGCAGATTACACC</genome_strand>
        <mrna_strand>TAAGATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTGTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACATAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGCTAGTGGTCGTGAAAGTAATTTATCGAATTTCGATTGGAAAAACGTGCAGATTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237503" ref_strand="+" ref_description="SGN-E237503 [cLED-19-I22]">
      <seq>atatatttttgttcttcatatcaacaccaacaaaaaagtacagatatggagaaggaaaaaccaagcaagccaaataaaaacatgattttgaaatttttaccagaagcagcagctgctaccgttatatttcaaaaccacccttttagtccaagtagagataaaagattacatcataatcacaaaggattttctggtccaattatatctataattccagctgaagcgagaattaaaaaatcgaatagcgaagacaaaggaagaagaaccaacatcaccaaaagattggtgcattggtcagatcaaacagaggaagaaactcaataaacgcaggaaaacggaacgcccaaaatcactcgaaaagaaatcatccaattttaaaaatatctttcaaagacggagaaaaaccgatgttgataaaaatgaaacaaatatgagatgcgaggtacaaaacagagcaccaccctgtttgagtcaaatgaggaaatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="30790" stop="31877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31090" g_stop="31577" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E237503" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31090" e_stop="31577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAA-ACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGC</genome_strand>
        <mrna_strand>ATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAGATATGGAGAAGGAAAAACCAAGCAAGCCAAATAAAAACATGATTTTGAAATTTTTACCAGAAGCAGCAGCTGCTACCGTTATATTTCAAAACCACCCTTTTAGTCCAAGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAAAAAATCGAATAGCGAAGACAAAGGAAGAAGAACCAACATCACCAAAAGATTGGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACGCAGGAAAACGGAACGCCCAAAATCACTCGAAAAGAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239882" ref_strand="+" ref_description="SGN-E239882 [cLED-29-L8]">
      <seq>tttttggtcttcatatcaacaccaacaaataagtacaaaaatggagaaggaaaaaccaagcaagccaaagaaaaacatgattttgaaatttttaccaaaagcagcagcaacaaccgttatattccaaaaccacccttttagtccaggtagagataaaagattacatcataatcacaaaggattttctggtccaattatatctataattccagctgaagcgagaattagaaaatcgaatagcgaaacaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="30795" stop="31645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31095" g_stop="31345" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E239882" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31095" e_stop="31345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGG</genome_strand>
        <mrna_strand>TTTTTGGTCTTCATATCAACACCAACAAATAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAACAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241658" ref_strand="+" ref_description="SGN-E241658 [cLED-36-A19]">
      <seq>ttgttcttcatatcaacaccaacaaaaaagtacaaaaatggagaaggaaaaaccaagcaagccaaagaaaaacatgattttgaaatttttaccaaaagcagcagcagcaaccgttatattccaaaaccacccttttagtccaggtagagataaaagattacatcataatcacaaaggattttctggtccaattatatctataattccagctgaagcgagaattagaaaatcgaatagcgaaacaaaggaagaagaaccaacatcaccaaaagtttcgtgcattggtcagatcaaacagaggaagaaactcaataaacccaggaaaacggaacgcccaaaatcactcgaaaaaaaatcatccaattttaaaaatatctttcaaagacggagaaaaaccgatgttgataaaaatgaaacaaatatgagatgcgaggtacaaaacagagcaccaccctgtttgagtcaaatgaggaaatatgctagtggtcgtgaaggtaatttatcgaatttcgattggaaaaacgtgcagattacacctgatgatcatcggaaatattactccgatgatgatagagatgattatcatgaagctgaagatgaagatgaggtaataattccattttcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="30798" stop="32024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31098" g_stop="31724" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E241658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31098" e_stop="31724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGCTAGTGGTCGTGAAGGTAATTTATCGAATTTCGATTGGAAAAACGTGCAGATTACACCTGATGATCATCGGAAATATTACTCCGATGATGATAGAGATGATTATCATGAAGCTGAAGATGAAGATGAGGTAATAATTCCATTTTCAGC</genome_strand>
        <mrna_strand>TTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGCTAGTGGTCGTGAAGGTAATTTATCGAATTTCGATTGGAAAAACGTGCAGATTACACCTGATGATCATCGGAAATATTACTCCGATGATGATAGAGATGATTATCATGAAGCTGAAGATGAAGATGAGGTAATAATTCCATTTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209596" ref_strand="+" ref_description="SGN-E209596 [cLEC-54-O1]">
      <seq>tcttcatatcaacaccaacaaaaaagtacaaaaatggagaaggaaaaaccaagcaagccaaagaaaaacatgattttgaaatttttaccaaaagcagcagcagcaaccgttatattccaaaaccacccttttagtccaggtagagataaaagattacatcataatcacaaaggattttctggtccaattatatctataattccagctgaagcgagaattagaaaatcgaatagcgaaacaaaggaagaagaaccaacatcaccaaaagtttcgtgcattggtcagatcaaacagaggaagaaactcaataaacccaggaaaacggaacgcccaaaatcactcgaaaaaaaatcatccaattttaaaaatatctttcagagacggagaaaaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="30802" stop="31795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31102" g_stop="31495" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E209596" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31102" e_stop="31495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCG</genome_strand>
        <mrna_strand>TCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAGAGACGGAGAAAAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242499" ref_strand="+" ref_description="SGN-E242499 [cLED-30-A2]">
      <seq>aacaccaacaaaaaagtacatagatggataaggaaaaaccaagcaagccaaagaaaaacatgattttgaaatttttaccaaaagcagcagcagcaaccgttatattccaaaaccacccttttagtccaggtagagataaatgattacatcataatcacaaaggattttctggtccaattatatctataatttcagctgaagcgagaattagaaaatcgaatagcgaaacataggaagaagaaccaacatcaccaaaagtttcgtgcattggtcagatcaaacataggaagaaactcaatatacccaggaaaacggaacgcccataatcactcgaaaaaaaatcatccttttttaaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="30812" stop="31772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31112" g_stop="31472" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E242499" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31112" e_stop="31472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATAT</genome_strand>
        <mrna_strand>AACACCAACAAAAAAGTACATAGATGGATAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAATGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTTCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACATAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACATAGGAAGAAACTCAATATACCCAGGAAAACGGAACGCCCATAATCACTCGAAAAAAAATCATCCTTTTTTAAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368092" ref_strand="+" ref_description="SGN-E368092 [TUS-22-K4](-)">
      <seq>atagcaaaacaaagaaaaaataaaccaaacatctcctaaagtgtcgtgcattggtcagatcaaacagaggaagaaactcaataagacccaggaaaacggaacgcccaaaatcactcgaaaaaaaatcatccaattttaaaaatatctttcaaagacggagaaaaaccgatgttgataaaaatgaaacaaatatgagatgcgaggtacaaaacagagcaccaccctgtttgagtcaaatgaggaaatatgctagtggtcgtgaaggtaatttatcgaatttcgattggaaaaacgtgcagattacacctgatgatcatcggaaatattactccgatgatgatagagatgattatcatgaagctgaagatgaagatgaggtaataattccattttcagctccaattttaataggaagagataatagaccaaattttactttggagccaaaaaaggaaattaatttatggaaaagaagaactatgactaaaccaaatcctcttcaattgaagaaataagttttgtttagttgatttaagcttagaattagtttacaaatcatcatgttgtaaactatgatgcaagtgtaacaatattttcaaagaattcaactattcaagtaatatagtttagtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="31046" stop="32264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31331" g_stop="31963" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E368092" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31331" e_stop="31963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCGAAACAAAGGAAGAA-GAACC-AACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAA-ACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGCTAGTGGTCGTGAAGGTAATTTATCGAATTTCGATTGGAAAAACGTGCAGATTACACCTGATGATCATCGGAAATATTACTCCGATGATGATAGAGATGATTATCATGAAGCTGAAGATGAAGATGAGGTAATAATTCCATTTTCAGCTCCAATTTTAATAGGAAGAGATAATAGACCAAATTTTACTTTGGAGCCAAAAAAGGAAATTAATTTATGGAAAAGAAGAACTATGACTAAACCAAATCCTCTTCAATTGAAGAAATAAGTTTTGTTTAGTTGATTTAAGCTTAGAATTAGTTTACAAATCATCATGTTGTAAACTATGATGCAAGTGTAACAATATTTTCAAAGAATTCAACTATTCAAGTAATATAGTTTAGTTTAAC</genome_strand>
        <mrna_strand>ATAGCAAAACAAAGAAAAAATAAACCAAACATCTCCTAAAGTGTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAGACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGCTAGTGGTCGTGAAGGTAATTTATCGAATTTCGATTGGAAAAACGTGCAGATTACACCTGATGATCATCGGAAATATTACTCCGATGATGATAGAGATGATTATCATGAAGCTGAAGATGAAGATGAGGTAATAATTCCATTTTCAGCTCCAATTTTAATAGGAAGAGATAATAGACCAAATTTTACTTTGGAGCCAAAAAAGGAAATTAATTTATGGAAAAGAAGAACTATGACTAAACCAAATCCTCTTCAATTGAAGAAATAAGTTTTGTTTAGTTGATTTAAGCTTAGAATTAGTTTACAAATCATCATGTTGTAAACTATGATGCAAGTGTAACAATATTTTCAAAGAATTCAACTATTCAAGTAATATAGTTTAGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717950" ref_strand="+" ref_description="SGN-E717950 [FC03AH02]">
      <seq>aatcggccgaattgagtttttttttcttcctgattttaattaaataaaataaattattatagggtttaaaacaagtgttgggtggggtttgggggatggtagataggtcagtacttagtaattagcagcaaattactgaacacagctgaatccatggccgtcacgaaatctatggtacgcttgaatttctgccgctatttcctcagttcattctcttctcaaagcaaatttaaattcttcagctctgtttcaacctcaaaaatcgccctctgcggcgacgtcggcgacggtaaagatgaaaatgggggacccatatgccgaactgaggttttatctaaagaagaagctcaaatagctgaaaagtttcattctttaatcaaagaccatcatcggaaaaaccctacagctactcctacttcaattcccttaaaccctaacatcactttcccaactctctccttcgatttttctagtatctccgataaccggtccatttccccgccggtcgtcagccgggttatcgagaaatgcgggtcggttcggcatggtatcccattttcacaggctctagctttcttcaattgggctgcagctcgtgattcgtgtggatctttcttaaaccccgagccttacaatgaaatgattgatcttgctggaaaggtacgtcaatttgatgttgcttggcatttgattgattcaatgaaactgaaaaatatcaaaatcccaattgaaactttttcgattttgattcgtcgttatgttcgtgctggtcttgcttccgaagctgttcatacgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="39873" stop="38483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39566" g_stop="38783" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="799" r_length="783" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E717950" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39566" e_stop="38783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTCTTTAATGATTTTAATTAAATAAAATAAATTATTATAGGGTTTAAAAGAAGTGTTGGGTGGGGTTTGGGGGATGGTAGATAGGTCAGTACTTAGTAATTAGCAGCAAATTACTGAACACAGCTGAATCCATGGCCGTCACGAAATCTATGGTACGCTTGAATTTCTGCCGCTATTTCCTCAGTTCATTCTCTTCTCAGAGCAAATTTAGATTCTTCAGCTCTGTTTCAACCTCAGAAATCGCCCTCTGCGGCGACGTCGGCGACGGTAAAGATGAAAATGGGGGACCCATATGCCGAACTGAGGTTTTATCTAAAGAAGAAGCTCAAATAGCTGAAAAGTTTCATTCTTTAATCAAAGACCATCATCGGAAAAACCCTACAGCTACTCCTACTTCAATTCCCTTAAACCCTAACATCACTTTCCCAACTCTCTCCTTCGATTTTTCTAGTATCTCCGATAACCGGTCCATTTCCCCGCCGGTCGTCAGCCGGGTTATCGAGAAATGCGGGTCGGTTCGGCATGGTATCCCATTTTCACAGGCTCTAGCTTTCTTCAATTGGGCTGCAGCTCGTGATTCGTGTGGATCTTTCTTAAACCCCGAGCCTTACAATGAAATGATTGATCTTGCTGGAAAGGTACGTCAATTTGATGTTGCTTGGCATTTGATTGATTCAATGAAACTGAAAAATATCAAAATCCCAATTGAAACTTTTTCGATTTTGATTCGTCGTTATGTTCGTGCTGGTCTTGCTTCCGAAGCTGTTCATACGTTTA</genome_strand>
        <mrna_strand>TTTTTTTTTC-TTCCTGATTTTAATTAAATAAAATAAATTATTATAGGGTTTAAAACAAGTGTTGGGTGGGGTTTGGGGGATGGTAGATAGGTCAGTACTTAGTAATTAGCAGCAAATTACTGAACACAGCTGAATCCATGGCCGTCACGAAATCTATGGTACGCTTGAATTTCTGCCGCTATTTCCTCAGTTCATTCTCTTCTCAAAGCAAATTTAAATTCTTCAGCTCTGTTTCAACCTCAAAAATCGCCCTCTGCGGCGACGTCGGCGACGGTAAAGATGAAAATGGGGGACCCATATGCCGAACTGAGGTTTTATCTAAAGAAGAAGCTCAAATAGCTGAAAAGTTTCATTCTTTAATCAAAGACCATCATCGGAAAAACCCTACAGCTACTCCTACTTCAATTCCCTTAAACCCTAACATCACTTTCCCAACTCTCTCCTTCGATTTTTCTAGTATCTCCGATAACCGGTCCATTTCCCCGCCGGTCGTCAGCCGGGTTATCGAGAAATGCGGGTCGGTTCGGCATGGTATCCCATTTTCACAGGCTCTAGCTTTCTTCAATTGGGCTGCAGCTCGTGATTCGTGTGGATCTTTCTTAAACCCCGAGCCTTACAATGAAATGATTGATCTTGCTGGAAAGGTACGTCAATTTGATGTTGCTTGGCATTTGATTGATTCAATGAAACTGAAAAATATCAAAATCCCAATTGAAACTTTTTCGATTTTGATTCGTCGTTATGTTCGTGCTGGTCTTGCTTCCGAAGCTGTTCATACGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559944" ref_strand="+" ref_description="SGN-E559944 [19521]">
      <seq>acactattttccaantttctcttccctccctaaaatgctaatttccccaagtgttcttgccaacaacaaacagattccttctctctttcattaattcctgtcagtaatttgcagatttctgtaacagccaagtcactgaggtgaaagatgactgctaatatccaaaaattccgaaatctttctactgctatgagccatagtttcgagtcaagatgtctcttgttatcactatcactttctgcaccatggtccagacactatggaggaattattggatagacatgtggtcaaaaaggagaagagccttgatgatgacgagaacgagctcctaaatagacagcgactcactagcagtcgccgtgaggctctaagtctctaccgagatgtcatccgtgctactcggttcttcatgtgggccaactctcaaggcaacctgtggcgtgatgtactcagggaaaatgtccgaaaggagtttgaggaggcacgatttgagagagatccagaagtcatcaccaggttgcttattggaggccgggatgctctgcaagctgctttggataaacttgctgagaaacaaaagcaagaaatcgttaagcaacgtggcaattcaaatactccttgatattccggtgttgtgaaatgtacagtgataagttcaagaaccttaacaagtgaagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="39891" stop="43311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40191" g_stop="40319" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40320" i_stop="41285" i_length="966">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="0.555" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41286" g_stop="41786" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="629" r_length="502" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41787" i_stop="42960" i_length="1174">
            <donor d_prob="0.982" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42961" g_stop="43011" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="681" r_length="52" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E559944" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40191" e_stop="40319"/>
          <exon e_start="41286" e_stop="41786"/>
          <exon e_start="42961" e_stop="43011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTATTTTCCAA-TTTCTCTTCCCTCCGTAGAATGCCTAATTGCCCAAAGTGTTGTTGCTAACAACAAACAGATTCTTTCTCTCTTTCATTAATTCCAGACAGTAATTTGCAGATTTCTATGAAACAGGTTAGATCTCAAATGTTTTCTCTAATTAGGGCTCAAAATACGTTCTTTTCTTCATATTTTAATTATTTTTTTCTGCTGTGTACTTCTTTCTGAATGATATTGTGTTTGATTTAACTGAGATGTTGATTGCATTTTGTTTATTCACTTTTTATGTTCAATCATATTGAAACTGGATTGTAGGCTGTAGCAAGTCAACTGTTAGAAAAAGTGCCAGGGAAGAATAAATTGTTGTATTATGTGTTGGTGTTGCAATGGGAGTTTAGTGCATCGAGCTGCCTCTTTTATATTCTAATTCAATCTTTTTTTTTTCTTTTAATATGTGCCAAAGTTTGGTTTTTGCTGCTAATTTTCTTTTTTACTGTGGTGTTCAATAATATATTTGCTTTGAAATCTATCGTTTAGCAACTTTTAAAACTTGAATTTTGATTATACTGAATGGAACGAGTATGTAGATTTCTCCGATAGTCCACTCATTGTCTGACCTGGTGCTCTTTCTCTACCAGCAGCCAAATGAAAAAGAGAAGTCGTTTTTTTGGTTTCGTTGTATCTCTATTCCTACAGTGCATTGCAGTTGAAAGGTGTATTTAGTTCCATTGAAATTGCTTTTGTAAGATACATGCTAGTGTATTTGTTCCATCACATTGTATGTCGAGTACAATTTGTTTCTTATTTTATCCCAAAAAGGGGTCTTGAGAGTCGGAGTTTTTTCCATCACCTAGTATTTTGCATACCACAAGACATGCACCGCTTCTTTCACTTCTGTTCTCTTGCTGCTATCGTGTTTGATGGCATTCTTAAGAAACTCGAGACTGTTCTGTATGGATATTGGTACGGTTTGAAGAATCGTGTTTCTTACTTCAGATCATTTCTTTCAATTCACTTTGATCTACTGGCTTTTTCTTGTGAAATATGACAATTTGATAAAATATGCCTGCTTTTGAAGTCTTATTTCTCTGCCCCTACCAGCCAAGTTACTGAGGTGAAAGATGACTGCTAATATCCAAAAATTCCGAAATCTTTCAACTGCTATGAGCCATAGTTTCAAGTCAAGATGTCTCTTG-CATCACTATCGTTTTCTGCACCATGGTCCAGACACTATGGAGGAATTATTGGATAGACATGTGGTCAAAAAGGAGAAGAGCCTTGATGATGATGAGAACGAGCTCCTCAATAGACAGCGACTCACTAGCAGCCGCCGTGAGGCTCTAAGTCTCTACCGAGATGTCATCCGTGCTACCCGGTTCTTCATGTGGGCCAACTCTCAAGGAAACCTGTGGCGTGATGTGCTCAGAGAAAATGTCCGAAAGGAGTTTGAGGAGGCACGATTTGAGAGAGATCCAGAAGTCATCACCAGGTTGCTTATTGGAGGCCGGGATGCTCTGCAAGCTGCTTTGGATAAACTTGCTGAGAAACAAAAGCAAGAAATCGAAAAGCAACATGGCAATTCAAATACTCCTTGATAGTCTGGTTAGTCAGATTTTTTCCCTCTCAATACACACCCATCAAAATATCAAGTTTTTCTCAGAACATTATCTACAAGATATATTACCACATACAGGATGACATTAACTTCAGTTTTTTTAGCGTTGGGCATTATTTCATTTATTTTTTTGATAAGTTTGTTACTGGAACTGAATGGGTGATTGAATAATCTGAAGTAGGATTCAAGTTAGATGCCGATTGGTCGACTTTTGGTACATACTTAAAATCTTTAATACAGATAAACAAACTACATTGGATATAAATGCATAACCGGAAACTTATAAATTTGTGTCCGTTTCAAAAGGTCGATGGATGAGACCATATAAATCAATCAGAAAAAGGTGAACTATAGCAATTTGATATGTTGTGTGCCTTCCTCTCACTGCAATATCATGAATTTGTCCGAATGATAGCAATTTGTTATCTTTTTAGCCCTCTAAACTTGGTTTCCCAAGATCAACCCTTGTAGTTAAAGGTCAAATTTAGTTCCCCTTTTACAAAGAAGTGCCTATAAAATCCAGACGCAGTTTCAACGTTTAAAAAAAAAAGAAAGAAGTTTGGAAGTTGGAACTATTGTCATTAGTGTTAGACATGTTTATTTGATGAATGTATGTCTTCTTTGCAATCAAACTTGATATTGTCTACTATACAATACTAGTACTTTTCATTGCATAGTTAGCAGAGCTAAATTGTAAAAATGTAGGTTGACATTCGAAAATTGAAGCAAAATTTTGGAGTAAATAGCTTTCCTCGTGTAGAATTAAAAGTAGACCAATGAGATGGAGAATGTTCCCAAGCTTGGTTATTGCTTGCAAATGAAAATTCAGTCCCCTCCTCAATAATAATAGGGTGATGTTACTGTTTGAAGCTTATTAATGTCAATTTAACAATCAAAGTACTAGTGGGCTCAGGGGCGGAGCCAAGTAAGGGCAAGGGATTCTGTTGAAAGTTGCAAGGCTAAAATTATTTTATGTATATATAGCAGATGTTGAATCCTCTTGGATTCTTTCATATTTTTGAATCTCTTTAGTGAAAATCCAAGCTCCGTCACAACGTGGGCTGGGTAACTTTACAATATTGATCTGCTATTCAATTCACTCTCCCTTCCACCCTTCTTTTCTCCATTGTTGAATGATATTTAGCTATGCTAATTGTGCAGGTGTTATGAGATGTACAGTGAT-AGTTCAACAACCTTAACAAGTGAAGCTCT</genome_strand>
        <mrna_strand>ACACTATTTTCCAANTTTCTCTTCCCTCCCTAAAATG-CTAATTTCCCCAAGTGTTCTTGCCAACAACAAACAGATTCCTTCTCTCTTTCATTAATTCCTGTCAGTAATTTGCAGATTTC--TGTAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTCACTGAGGTGAAAGATGACTGCTAATATCCAAAAATTCCGAAATCTTTCTACTGCTATGAGCCATAGTTTCGAGTCAAGATGTCTCTTGTTATCACTATCACTTTCTGCACCATGGTCCAGACACTATGGAGGAATTATTGGATAGACATGTGGTCAAAAAGGAGAAGAGCCTTGATGATGACGAGAACGAGCTCCTAAATAGACAGCGACTCACTAGCAGTCGCCGTGAGGCTCTAAGTCTCTACCGAGATGTCATCCGTGCTACTCGGTTCTTCATGTGGGCCAACTCTCAAGGCAACCTGTGGCGTGATGTACTCAGGGAAAATGTCCGAAAGGAGTTTGAGGAGGCACGATTTGAGAGAGATCCAGAAGTCATCACCAGGTTGCTTATTGGAGGCCGGGATGCTCTGCAAGCTGCTTTGGATAAACTTGCTGAGAAACAAAAGCAAGAAATCGTTAAGCAACGTGGCAATTCAAATACTCCTTGATATTCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTGAAATGTACAGTGATAAGTTCAAGAACCTTAACAAGTGAAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363834" ref_strand="+" ref_description="SGN-E363834 [cLPP-3-J24]">
      <seq>ctatacgattttctcaatttctctgattcattttttccgttcgacgaactctcaccgggaaaagcaactccgttgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtactttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttanatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcttttgtttaccacaatttcttgtccaaggaagaatgtgaatacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43211" stop="45172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43511" g_stop="43867" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="448" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44872" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="473" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E363834" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43511" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACGATTTTCTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGA</genome_strand>
        <mrna_strand>CTATACGATTTTCTCAATTTCTCTGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCGTTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTACTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTANATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCTTTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208423" ref_strand="+" ref_description="SGN-E208423 [cLEC-37-N7]">
      <seq>gattttctcaatttctccgattcattttttccgttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgatagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43217" stop="45220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43517" g_stop="43867" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="442" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44920" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="515" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E208423" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43517" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTCTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCA</genome_strand>
        <mrna_strand>GATTTTCTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248631" ref_strand="+" ref_description="SGN-E248631 [cLEF-58-G16]">
      <seq>ttttctcaatttctccgattcatttgttccgttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaatattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaaaggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcgggtcaacttagatatacgggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgcgggaacctcgcgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcacttgttgatagcaagaccggtcagagtaaagatagcagggttcgtacaagttcgggaatgtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43219" stop="45832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43519" g_stop="43867" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="440" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="0.94"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44945" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="538" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44946" i_stop="45504" i_length="559">
            <donor d_prob="0.505" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45505" g_stop="45532" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="566" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E248631" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43519" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44945"/>
          <exon e_start="45505" e_stop="45532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAGGTTTGTAGTTGGTGATTTCTTTACATTCACTGATTGCCAGTTTGCCACAACAAGCATCTTTGAAGTCTTTTCATCATTCTATAATAATTTTCTTTTAGTAGCTTGGTTTAGAGACTTAATTCTTTTTTTCCCTTCATTCCAAACCAATATCTGATACTATTTCAGTTTGAGGACACCTCAAGATGTCTGCCTCCATCCTATTTAATAGTACTTTATGCAACTTCTACACAGAATAAGAACTACATTTTAGCTATGTTTTCCTTAAGGTATTAACTTTTCGATTGCTACTTACTGTTTTCCACTGCTATCAGAAAGTAGACAAATCTTACTAACATTTTTTATGCTGGGTTAAATGGTGTCATCTAAAGTAGGATGGAGGAAGGAATAGTTTTTTCCTATGTTGCTTGGACTCTTCAAAAATGAAATCGAATGTTTGTCGGATCCTTCAGAAGTAGTGCATTTTTGTAAGATACGACATCTGAGCGGCATCATTTTTTGGAGAGTCCGATCAACATAGGTTTTTTCTATGGACTGATGTTCTGACAGTTTCATATAACAGGGTTCGTACAAGTTCGGGAATGTTTTTG</genome_strand>
        <mrna_strand>TTTTCTCAATTTCTCCGATTCATTTGTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAATATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAAGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGGTCAACTTAGATAT........................................................................................................................................ACGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGCGGGAACCTCGCGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCACTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTACAAGTTCGGGAATGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248630" ref_strand="+" ref_description="SGN-E248630 [cLEF-58-G14]">
      <seq>ttctcaatttttccgattcatttgtttcgctcggcgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatctgatcaatctagggtttcagtgaatattgtattgaagcactggcgaaggggaggttgaatcggcatcaaaggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctctaggcattactaatcttcctgttggatctgatgatgagatcatcttcgactgttcaggatcacatcaagttcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43221" stop="44151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43521" g_stop="43851" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E248630" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43521" e_stop="43851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAG-TCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGC</genome_strand>
        <mrna_strand>TTCTCAATTTTTCCGATTCATTTGTTTCGCTCGGCGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATCTGATCAATCTAGGGTTTCAGTGAATATTGTATTGAAGCACTGGCGAAGGGGAGGTTGAATCGGCATCAAAGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTAGGCATTACTAATCTTCCTGTTGGATCTGATGATGAGATCATCTTCGACTGTTCAGGATCACATCAAGTTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259817" ref_strand="+" ref_description="SGN-E259817 [cLEG-51-G14]">
      <seq>ctcaatttctccgattcattttttccgttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgatagcaagaccggtcagagtaaagatagcagggttcgtacaagttcgggaatgtttttgaggagggggcgagataaaattatcagaaatattgagaagagaatagcagattatacattcattcctgcagaacatggagaaagtctacaagtcttacattatgaagttggacagaagtatgagcctcattatgactacttccttgatgacttcacaccaaaatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43223" stop="46535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43523" g_stop="43867" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="436" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44945" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="534" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44946" i_stop="45504" i_length="559">
            <donor d_prob="0.505" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45505" g_stop="45602" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="632" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45603" i_stop="46136" i_length="534">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.525" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46137" g_stop="46235" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="729" r_length="97" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E259817" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43523" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44945"/>
          <exon e_start="45505" e_stop="45602"/>
          <exon e_start="46137" e_stop="46235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAGGTTTGTAGTTGGTGATTTCTTTACATTCACTGATTGCCAGTTTGCCACAACAAGCATCTTTGAAGTCTTTTCATCATTCTATAATAATTTTCTTTTAGTAGCTTGGTTTAGAGACTTAATTCTTTTTTTCCCTTCATTCCAAACCAATATCTGATACTATTTCAGTTTGAGGACACCTCAAGATGTCTGCCTCCATCCTATTTAATAGTACTTTATGCAACTTCTACACAGAATAAGAACTACATTTTAGCTATGTTTTCCTTAAGGTATTAACTTTTCGATTGCTACTTACTGTTTTCCACTGCTATCAGAAAGTAGACAAATCTTACTAACATTTTTTATGCTGGGTTAAATGGTGTCATCTAAAGTAGGATGGAGGAAGGAATAGTTTTTTCCTATGTTGCTTGGACTCTTCAAAAATGAAATCGAATGTTTGTCGGATCCTTCAGAAGTAGTGCATTTTTGTAAGATACGACATCTGAGCGGCATCATTTTTTGGAGAGTCCGATCAACATAGGTTTTTTCTATGGACTGATGTTCTGACAGTTTCATATAACAGGGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTATCAGAAATATTGAGAAGAGAATAGCAGATTATACATTCATTCCTGCAGGTATGAGGACTGTGTGATACCATACAAAAATCATAGCGTATGAACTCTTTGTTGTCGTTATTATTGTCATTGTCATTGTCATCCACGAGTTCTTGTTAAAAAATTATAAATGGGAAACATTCTCCGATTACGTTCCTTATTTGTTTTTATAAGAAGCAATGGCTGCAAACTTAAAACCTCTTAAGTAGTAATCATTAAATTTCAAAATTTTCTATTACTTTAATTTCGAAGGTTTAGAAGTTAAGCTTAACTCAAGTGAGGTTTTCATTTTATTCATGTTAGTTGCAGAACTTAAATGTATATTGTCCCTGTCTAGAGATATCTTAGGCTGTTCTTTTGCCTGGCTTTCAAAATATGATATTACTAGTTTGATTTTCCTCTTCACAAAACAAAAACGCGAGTGAGTGATTCTATTTTTGTTTATCAGATTCACTAATGAAGATTGATTCGCAGACGTGTATCCATCCTCTGTTAGGATCATAATTATGCTTTACTTCCCTTGTGAATTCCCTGATTAGCTTAGCTTGTTTACAGAACATGGAGAAGGTCTACAAGTCTTACATTATGAAGTTGGACAGAAGTATGAGCCTCATTATGACTACTTCCTTGATGACTTCAACACCAAAAATGGGG</genome_strand>
        <mrna_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTATCAGAAATATTGAGAAGAGAATAGCAGATTATACATTCATTCCTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGGAGAAAGTCTACAAGTCTTACATTATGAAGTTGGACAGAAGTATGAGCCTCATTATGACTACTTCCTTGATGACTTC-ACACC-AAAATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259810" ref_strand="+" ref_description="SGN-E259810 [cLEG-51-C14]">
      <seq>ctcaatttctccgattcattttttccgttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgatagcaagaccggtcagagtaaagatagcagggttcgtacnagttcgggaatgtttttgaggagggggcgagataaattatcagaaatattgagaagagaatagcagattatacattcattcctgcagaacatggagaaggtctacaagtcttacattatgaagttggacagaagtatgagcctcattatgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43223" stop="46503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43523" g_stop="43867" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="436" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44945" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="534" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44946" i_stop="45504" i_length="559">
            <donor d_prob="0.505" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45505" g_stop="45602" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="631" r_length="97" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45603" i_stop="46136" i_length="534">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.525" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46137" g_stop="46203" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="698" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E259810" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43523" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44945"/>
          <exon e_start="45505" e_stop="45602"/>
          <exon e_start="46137" e_stop="46203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAGGTTTGTAGTTGGTGATTTCTTTACATTCACTGATTGCCAGTTTGCCACAACAAGCATCTTTGAAGTCTTTTCATCATTCTATAATAATTTTCTTTTAGTAGCTTGGTTTAGAGACTTAATTCTTTTTTTCCCTTCATTCCAAACCAATATCTGATACTATTTCAGTTTGAGGACACCTCAAGATGTCTGCCTCCATCCTATTTAATAGTACTTTATGCAACTTCTACACAGAATAAGAACTACATTTTAGCTATGTTTTCCTTAAGGTATTAACTTTTCGATTGCTACTTACTGTTTTCCACTGCTATCAGAAAGTAGACAAATCTTACTAACATTTTTTATGCTGGGTTAAATGGTGTCATCTAAAGTAGGATGGAGGAAGGAATAGTTTTTTCCTATGTTGCTTGGACTCTTCAAAAATGAAATCGAATGTTTGTCGGATCCTTCAGAAGTAGTGCATTTTTGTAAGATACGACATCTGAGCGGCATCATTTTTTGGAGAGTCCGATCAACATAGGTTTTTTCTATGGACTGATGTTCTGACAGTTTCATATAACAGGGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTATCAGAAATATTGAGAAGAGAATAGCAGATTATACATTCATTCCTGCAGGTATGAGGACTGTGTGATACCATACAAAAATCATAGCGTATGAACTCTTTGTTGTCGTTATTATTGTCATTGTCATTGTCATCCACGAGTTCTTGTTAAAAAATTATAAATGGGAAACATTCTCCGATTACGTTCCTTATTTGTTTTTATAAGAAGCAATGGCTGCAAACTTAAAACCTCTTAAGTAGTAATCATTAAATTTCAAAATTTTCTATTACTTTAATTTCGAAGGTTTAGAAGTTAAGCTTAACTCAAGTGAGGTTTTCATTTTATTCATGTTAGTTGCAGAACTTAAATGTATATTGTCCCTGTCTAGAGATATCTTAGGCTGTTCTTTTGCCTGGCTTTCAAAATATGATATTACTAGTTTGATTTTCCTCTTCACAAAACAAAAACGCGAGTGAGTGATTCTATTTTTGTTTATCAGATTCACTAATGAAGATTGATTCGCAGACGTGTATCCATCCTCTGTTAGGATCATAATTATGCTTTACTTCCCTTGTGAATTCCCTGATTAGCTTAGCTTGTTTACAGAACATGGAGAAGGTCTACAAGTCTTACATTATGAAGTTGGACAGAAGTATGAGCCTCATTATGACTA</genome_strand>
        <mrna_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTACNAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGAT-AAATTATCAGAAATATTGAGAAGAGAATAGCAGATTATACATTCATTCCTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGGAGAAGGTCTACAAGTCTTACATTATGAAGTTGGACAGAAGTATGAGCCTCATTATGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259825" ref_strand="+" ref_description="SGN-E259825 [cLEG-51-K14]">
      <seq>ctcaatttctccgattcattttttccgttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgatagcaagaccggtcagagtaaagatagcagggttcgtacaagttcgggaatgtttttgaggagggggcgagataaattatcagaaatattgagaagagaatagcagattatacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43223" stop="45892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43523" g_stop="43867" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="436" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44945" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="534" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44946" i_stop="45504" i_length="559">
            <donor d_prob="0.505" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45505" g_stop="45592" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="621" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E259825" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43523" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44945"/>
          <exon e_start="45505" e_stop="45592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAGGTTTGTAGTTGGTGATTTCTTTACATTCACTGATTGCCAGTTTGCCACAACAAGCATCTTTGAAGTCTTTTCATCATTCTATAATAATTTTCTTTTAGTAGCTTGGTTTAGAGACTTAATTCTTTTTTTCCCTTCATTCCAAACCAATATCTGATACTATTTCAGTTTGAGGACACCTCAAGATGTCTGCCTCCATCCTATTTAATAGTACTTTATGCAACTTCTACACAGAATAAGAACTACATTTTAGCTATGTTTTCCTTAAGGTATTAACTTTTCGATTGCTACTTACTGTTTTCCACTGCTATCAGAAAGTAGACAAATCTTACTAACATTTTTTATGCTGGGTTAAATGGTGTCATCTAAAGTAGGATGGAGGAAGGAATAGTTTTTTCCTATGTTGCTTGGACTCTTCAAAAATGAAATCGAATGTTTGTCGGATCCTTCAGAAGTAGTGCATTTTTGTAAGATACGACATCTGAGCGGCATCATTTTTTGGAGAGTCCGATCAACATAGGTTTTTTCTATGGACTGATGTTCTGACAGTTTCATATAACAGGGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTATCAGAAATATTGAGAAGAGAATAGCAGATTATACATTC</genome_strand>
        <mrna_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGAT-AAATTATCAGAAATATTGAGAAGAGAATAGCAGATTATACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259804" ref_strand="+" ref_description="SGN-E259804 [cLEG-51-A12]">
      <seq>ctcaatttctccgattcattttttccgttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgatagcaagaccggtcagagtaaagatagcagggttcgtacaagttcgggaatgtttttgaggagggggcgagataaaattatcagaaatattgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43223" stop="45869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43523" g_stop="43867" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="436" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44945" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="534" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44946" i_stop="45504" i_length="559">
            <donor d_prob="0.505" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45505" g_stop="45569" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="599" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E259804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43523" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44945"/>
          <exon e_start="45505" e_stop="45569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAGGTTTGTAGTTGGTGATTTCTTTACATTCACTGATTGCCAGTTTGCCACAACAAGCATCTTTGAAGTCTTTTCATCATTCTATAATAATTTTCTTTTAGTAGCTTGGTTTAGAGACTTAATTCTTTTTTTCCCTTCATTCCAAACCAATATCTGATACTATTTCAGTTTGAGGACACCTCAAGATGTCTGCCTCCATCCTATTTAATAGTACTTTATGCAACTTCTACACAGAATAAGAACTACATTTTAGCTATGTTTTCCTTAAGGTATTAACTTTTCGATTGCTACTTACTGTTTTCCACTGCTATCAGAAAGTAGACAAATCTTACTAACATTTTTTATGCTGGGTTAAATGGTGTCATCTAAAGTAGGATGGAGGAAGGAATAGTTTTTTCCTATGTTGCTTGGACTCTTCAAAAATGAAATCGAATGTTTGTCGGATCCTTCAGAAGTAGTGCATTTTTGTAAGATACGACATCTGAGCGGCATCATTTTTTGGAGAGTCCGATCAACATAGGTTTTTTCTATGGACTGATGTTCTGACAGTTTCATATAACAGGGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTATCAGAAATATTGAGA</genome_strand>
        <mrna_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTATCAGAAATATTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259830" ref_strand="+" ref_description="SGN-E259830 [cLEG-51-O14]">
      <seq>ctcaatttctccgattcattttttccgttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgatagcaagaccggtcagagtaaagatagcagggttcgtacnagttcgggaatgtttttgaggagggggcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43223" stop="45844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43523" g_stop="43867" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="436" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44945" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="534" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44946" i_stop="45504" i_length="559">
            <donor d_prob="0.505" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45505" g_stop="45544" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="574" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E259830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43523" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44945"/>
          <exon e_start="45505" e_stop="45544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAGGTTTGTAGTTGGTGATTTCTTTACATTCACTGATTGCCAGTTTGCCACAACAAGCATCTTTGAAGTCTTTTCATCATTCTATAATAATTTTCTTTTAGTAGCTTGGTTTAGAGACTTAATTCTTTTTTTCCCTTCATTCCAAACCAATATCTGATACTATTTCAGTTTGAGGACACCTCAAGATGTCTGCCTCCATCCTATTTAATAGTACTTTATGCAACTTCTACACAGAATAAGAACTACATTTTAGCTATGTTTTCCTTAAGGTATTAACTTTTCGATTGCTACTTACTGTTTTCCACTGCTATCAGAAAGTAGACAAATCTTACTAACATTTTTTATGCTGGGTTAAATGGTGTCATCTAAAGTAGGATGGAGGAAGGAATAGTTTTTTCCTATGTTGCTTGGACTCTTCAAAAATGAAATCGAATGTTTGTCGGATCCTTCAGAAGTAGTGCATTTTTGTAAGATACGACATCTGAGCGGCATCATTTTTTGGAGAGTCCGATCAACATAGGTTTTTTCTATGGACTGATGTTCTGACAGTTTCATATAACAGGGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGA</genome_strand>
        <mrna_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTACNAGTTCGGGAATGTTTTTGAGGAGGGGGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259827" ref_strand="+" ref_description="SGN-E259827 [cLEG-51-M14]">
      <seq>ctcaatttctccgattcattttttccgttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgatagcaagaccggtcagagtaaagatagcagggttcgtacnagttcgggaatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43223" stop="45830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43523" g_stop="43867" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="436" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44945" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="534" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44946" i_stop="45504" i_length="559">
            <donor d_prob="0.505" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45505" g_stop="45530" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="560" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E259827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43523" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44945"/>
          <exon e_start="45505" e_stop="45530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAGGTTTGTAGTTGGTGATTTCTTTACATTCACTGATTGCCAGTTTGCCACAACAAGCATCTTTGAAGTCTTTTCATCATTCTATAATAATTTTCTTTTAGTAGCTTGGTTTAGAGACTTAATTCTTTTTTTCCCTTCATTCCAAACCAATATCTGATACTATTTCAGTTTGAGGACACCTCAAGATGTCTGCCTCCATCCTATTTAATAGTACTTTATGCAACTTCTACACAGAATAAGAACTACATTTTAGCTATGTTTTCCTTAAGGTATTAACTTTTCGATTGCTACTTACTGTTTTCCACTGCTATCAGAAAGTAGACAAATCTTACTAACATTTTTTATGCTGGGTTAAATGGTGTCATCTAAAGTAGGATGGAGGAAGGAATAGTTTTTTCCTATGTTGCTTGGACTCTTCAAAAATGAAATCGAATGTTTGTCGGATCCTTCAGAAGTAGTGCATTTTTGTAAGATACGACATCTGAGCGGCATCATTTTTTGGAGAGTCCGATCAACATAGGTTTTTTCTATGGACTGATGTTCTGACAGTTTCATATAACAGGGTTCGTACAAGTTCGGGAATGTTTT</genome_strand>
        <mrna_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTACNAGTTCGGGAATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259805" ref_strand="+" ref_description="SGN-E259805 [cLEG-51-A14]">
      <seq>ctcaatttctccgattcattttttccgttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgatagcaagaccggtcagagtaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43223" stop="45240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43523" g_stop="43867" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="436" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44940" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="529" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E259805" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43523" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGAT</genome_strand>
        <mrna_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259815" ref_strand="+" ref_description="SGN-E259815 [cLEG-51-E14]">
      <seq>ctcaatttctccgattcattttttccgttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43223" stop="45216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43523" g_stop="43867" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="436" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44916" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="505" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E259815" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43523" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGAT</genome_strand>
        <mrna_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259363" ref_strand="+" ref_description="SGN-E259363 [cLEG-43-F19]">
      <seq>ctcaatttctccgattcattttttccgttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43223" stop="45206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43523" g_stop="43867" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="436" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44906" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="495" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E259363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43523" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATC</genome_strand>
        <mrna_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260024" ref_strand="+" ref_description="SGN-E260024 [cLEG-52-I17]">
      <seq>ctcaatttctccgattcattttttccgttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43223" stop="45206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43523" g_stop="43867" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="436" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44906" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="495" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E260024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43523" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATC</genome_strand>
        <mrna_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259821" ref_strand="+" ref_description="SGN-E259821 [cLEG-51-I14]">
      <seq>ctcaatttctccgattcattttttccgttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttaaatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43223" stop="45183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43523" g_stop="43867" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="436" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44883" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="472" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E259821" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43523" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCT</genome_strand>
        <mrna_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAAATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278675" ref_strand="+" ref_description="SGN-E278675 [cLER-10-D18]">
      <seq>ctcaatttctccgattcattttttccgttcgacgaactctcaccgggaaaagcaactccgttgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgccttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgcgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43223" stop="45181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43523" g_stop="43867" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="436" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44881" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="470" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E278675" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43523" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAG</genome_strand>
        <mrna_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCGTTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGCCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGCGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259809" ref_strand="+" ref_description="SGN-E259809 [cLEG-51-C12]">
      <seq>ctcaatttctccgattcattttttccgttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttgggtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43223" stop="44106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43523" g_stop="43806" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E259809" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43523" e_stop="43806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTG</genome_strand>
        <mrna_strand>CTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336623" ref_strand="+" ref_description="SGN-E336623 [cTOE-4-F5]">
      <seq>ttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43250" stop="45216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43550" g_stop="43867" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="409" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44916" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="478" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E336623" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43550" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGAT</genome_strand>
        <mrna_strand>TTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341198" ref_strand="+" ref_description="SGN-E341198 [cTOE-22-G15]">
      <seq>ttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagctgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataagggaaggtgacggactggggaaaagaggggaacaatggacagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43250" stop="44349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43550" g_stop="43867" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44049" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="364" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E341198" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43550" e_stop="43867"/>
          <exon e_start="44004" e_stop="44049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAG</genome_strand>
        <mrna_strand>TTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGCTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AAGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263241" ref_strand="+" ref_description="SGN-E263241 [cLEG-62-H20]">
      <seq>gaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgatagcaagaccggtcagagtaaagatagcagggttcgtacaagttcgggaatgtttttgaggagggggcgagataaaattatcagaaatattgagaagagaatagcagattatacattcattcctgcagaacatggagaaggtctacaagtcttacattatgaagttggacagaagtatgagcctcattatgactacttccttgatgacttcaacaccaaaaatgggggccaacgtatagctactcttctcatgtatctatcagatgttgaagaaggaggtgagactgtttttccagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43256" stop="46737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43556" g_stop="43867" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="403" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44945" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="501" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44946" i_stop="45504" i_length="559">
            <donor d_prob="0.505" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45505" g_stop="45602" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="599" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45603" i_stop="46136" i_length="534">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.525" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46137" g_stop="46266" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="729" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46267" i_stop="46395" i_length="129">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46396" g_stop="46437" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="771" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E263241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43556" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44945"/>
          <exon e_start="45505" e_stop="45602"/>
          <exon e_start="46137" e_stop="46266"/>
          <exon e_start="46396" e_stop="46437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAGGTTTGTAGTTGGTGATTTCTTTACATTCACTGATTGCCAGTTTGCCACAACAAGCATCTTTGAAGTCTTTTCATCATTCTATAATAATTTTCTTTTAGTAGCTTGGTTTAGAGACTTAATTCTTTTTTTCCCTTCATTCCAAACCAATATCTGATACTATTTCAGTTTGAGGACACCTCAAGATGTCTGCCTCCATCCTATTTAATAGTACTTTATGCAACTTCTACACAGAATAAGAACTACATTTTAGCTATGTTTTCCTTAAGGTATTAACTTTTCGATTGCTACTTACTGTTTTCCACTGCTATCAGAAAGTAGACAAATCTTACTAACATTTTTTATGCTGGGTTAAATGGTGTCATCTAAAGTAGGATGGAGGAAGGAATAGTTTTTTCCTATGTTGCTTGGACTCTTCAAAAATGAAATCGAATGTTTGTCGGATCCTTCAGAAGTAGTGCATTTTTGTAAGATACGACATCTGAGCGGCATCATTTTTTGGAGAGTCCGATCAACATAGGTTTTTTCTATGGACTGATGTTCTGACAGTTTCATATAACAGGGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTATCAGAAATATTGAGAAGAGAATAGCAGATTATACATTCATTCCTGCAGGTATGAGGACTGTGTGATACCATACAAAAATCATAGCGTATGAACTCTTTGTTGTCGTTATTATTGTCATTGTCATTGTCATCCACGAGTTCTTGTTAAAAAATTATAAATGGGAAACATTCTCCGATTACGTTCCTTATTTGTTTTTATAAGAAGCAATGGCTGCAAACTTAAAACCTCTTAAGTAGTAATCATTAAATTTCAAAATTTTCTATTACTTTAATTTCGAAGGTTTAGAAGTTAAGCTTAACTCAAGTGAGGTTTTCATTTTATTCATGTTAGTTGCAGAACTTAAATGTATATTGTCCCTGTCTAGAGATATCTTAGGCTGTTCTTTTGCCTGGCTTTCAAAATATGATATTACTAGTTTGATTTTCCTCTTCACAAAACAAAAACGCGAGTGAGTGATTCTATTTTTGTTTATCAGATTCACTAATGAAGATTGATTCGCAGACGTGTATCCATCCTCTGTTAGGATCATAATTATGCTTTACTTCCCTTGTGAATTCCCTGATTAGCTTAGCTTGTTTACAGAACATGGAGAAGGTCTACAAGTCTTACATTATGAAGTTGGACAGAAGTATGAGCCTCATTATGACTACTTCCTTGATGACTTCAACACCAAAAATGGGGGCCAACGTATAGCTACTCTTCTCATGTATCTGTAAGGCTTATAATTCCTCAAATAATTATATGATAAATATGGTAGAAGTTCTGATTTTTCTCTAAGTTGCATCCATAATGATGAATACACAGATTGGTTGTATAATTTGCTTATCTGGGGCATATGCAGATCAGATGTTGAAGAAGGAGGTGAGACTGTTTTTCCAGCAGC</genome_strand>
        <mrna_strand>GAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTATCAGAAATATTGAGAAGAGAATAGCAGATTATACATTCATTCCTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGGAGAAGGTCTACAAGTCTTACATTATGAAGTTGGACAGAAGTATGAGCCTCATTATGACTACTTCCTTGATGACTTCAACACCAAAAATGGGGGCCAACGTATAGCTACTCTTCTCATGTATCT.................................................................................................................................ATCAGATGTTGAAGAAGGAGGTGAGACTGTTTTTCCAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257071" ref_strand="+" ref_description="SGN-E257071 [cLEG-44-H5]">
      <seq>gaactctcacgcgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgcgcatttgtgtaccacaatttcttgtccaacgaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgatagcaagaccggtcagagtaaagatagcagggttcgtacaagttccggaatgtttttgatgagggggcgagataaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43256" stop="45854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43556" g_stop="43867" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="404" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44945" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="502" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44946" i_stop="45504" i_length="559">
            <donor d_prob="0.505" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45505" g_stop="45554" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="552" r_length="50" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E257071" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43556" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44945"/>
          <exon e_start="45505" e_stop="45554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCTCAC-CGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAGGTTTGTAGTTGGTGATTTCTTTACATTCACTGATTGCCAGTTTGCCACAACAAGCATCTTTGAAGTCTTTTCATCATTCTATAATAATTTTCTTTTAGTAGCTTGGTTTAGAGACTTAATTCTTTTTTTCCCTTCATTCCAAACCAATATCTGATACTATTTCAGTTTGAGGACACCTCAAGATGTCTGCCTCCATCCTATTTAATAGTACTTTATGCAACTTCTACACAGAATAAGAACTACATTTTAGCTATGTTTTCCTTAAGGTATTAACTTTTCGATTGCTACTTACTGTTTTCCACTGCTATCAGAAAGTAGACAAATCTTACTAACATTTTTTATGCTGGGTTAAATGGTGTCATCTAAAGTAGGATGGAGGAAGGAATAGTTTTTTCCTATGTTGCTTGGACTCTTCAAAAATGAAATCGAATGTTTGTCGGATCCTTCAGAAGTAGTGCATTTTTGTAAGATACGACATCTGAGCGGCATCATTTTTTGGAGAGTCCGATCAACATAGGTTTTTTCTATGGACTGATGTTCTGACAGTTTCATATAACAGGGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTA</genome_strand>
        <mrna_strand>GAACTCTCACGCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGCGCATTTGTGTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAACGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTACAAGTTCCGGAATGTTTTTGATGAGGGGGCGAGATAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259705" ref_strand="+" ref_description="SGN-E259705 [cLEG-42-F9]">
      <seq>gaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgatagcaagaccggtcagagtaaagatagcagggttcgtacaagttcgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43256" stop="45824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43556" g_stop="43867" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="403" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44945" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="501" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44946" i_stop="45504" i_length="559">
            <donor d_prob="0.505" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45505" g_stop="45524" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="521" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E259705" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43556" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44945"/>
          <exon e_start="45505" e_stop="45524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAGGTTTGTAGTTGGTGATTTCTTTACATTCACTGATTGCCAGTTTGCCACAACAAGCATCTTTGAAGTCTTTTCATCATTCTATAATAATTTTCTTTTAGTAGCTTGGTTTAGAGACTTAATTCTTTTTTTCCCTTCATTCCAAACCAATATCTGATACTATTTCAGTTTGAGGACACCTCAAGATGTCTGCCTCCATCCTATTTAATAGTACTTTATGCAACTTCTACACAGAATAAGAACTACATTTTAGCTATGTTTTCCTTAAGGTATTAACTTTTCGATTGCTACTTACTGTTTTCCACTGCTATCAGAAAGTAGACAAATCTTACTAACATTTTTTATGCTGGGTTAAATGGTGTCATCTAAAGTAGGATGGAGGAAGGAATAGTTTTTTCCTATGTTGCTTGGACTCTTCAAAAATGAAATCGAATGTTTGTCGGATCCTTCAGAAGTAGTGCATTTTTGTAAGATACGACATCTGAGCGGCATCATTTTTTGGAGAGTCCGATCAACATAGGTTTTTTCTATGGACTGATGTTCTGACAGTTTCATATAACAGGGTTCGTACAAGTTCGGGAA</genome_strand>
        <mrna_strand>GAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTACAAGTTCGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233412" ref_strand="+" ref_description="SGN-E233412 [cLED-9-F17]">
      <seq>taacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgatagcaagaccggtcagagtaaagatagcagggttcgtacaagttcgggaatgtttttgaggagggggcgagataaaattatcagagatattgagaagagaatagcagattatacattcattcctgcagaacatggacaaggtctacaagtcttacattatgaagttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43447" stop="46476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43747" g_stop="43867" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="212" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44945" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="310" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44946" i_stop="45504" i_length="559">
            <donor d_prob="0.505" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45505" g_stop="45602" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45603" i_stop="46136" i_length="534">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.525" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46137" g_stop="46176" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="448" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E233412" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43747" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44945"/>
          <exon e_start="45505" e_stop="45602"/>
          <exon e_start="46137" e_stop="46176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAGGTTTGTAGTTGGTGATTTCTTTACATTCACTGATTGCCAGTTTGCCACAACAAGCATCTTTGAAGTCTTTTCATCATTCTATAATAATTTTCTTTTAGTAGCTTGGTTTAGAGACTTAATTCTTTTTTTCCCTTCATTCCAAACCAATATCTGATACTATTTCAGTTTGAGGACACCTCAAGATGTCTGCCTCCATCCTATTTAATAGTACTTTATGCAACTTCTACACAGAATAAGAACTACATTTTAGCTATGTTTTCCTTAAGGTATTAACTTTTCGATTGCTACTTACTGTTTTCCACTGCTATCAGAAAGTAGACAAATCTTACTAACATTTTTTATGCTGGGTTAAATGGTGTCATCTAAAGTAGGATGGAGGAAGGAATAGTTTTTTCCTATGTTGCTTGGACTCTTCAAAAATGAAATCGAATGTTTGTCGGATCCTTCAGAAGTAGTGCATTTTTGTAAGATACGACATCTGAGCGGCATCATTTTTTGGAGAGTCCGATCAACATAGGTTTTTTCTATGGACTGATGTTCTGACAGTTTCATATAACAGGGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTATCAGAAATATTGAGAAGAGAATAGCAGATTATACATTCATTCCTGCAGGTATGAGGACTGTGTGATACCATACAAAAATCATAGCGTATGAACTCTTTGTTGTCGTTATTATTGTCATTGTCATTGTCATCCACGAGTTCTTGTTAAAAAATTATAAATGGGAAACATTCTCCGATTACGTTCCTTATTTGTTTTTATAAGAAGCAATGGCTGCAAACTTAAAACCTCTTAAGTAGTAATCATTAAATTTCAAAATTTTCTATTACTTTAATTTCGAAGGTTTAGAAGTTAAGCTTAACTCAAGTGAGGTTTTCATTTTATTCATGTTAGTTGCAGAACTTAAATGTATATTGTCCCTGTCTAGAGATATCTTAGGCTGTTCTTTTGCCTGGCTTTCAAAATATGATATTACTAGTTTGATTTTCCTCTTCACAAAACAAAAACGCGAGTGAGTGATTCTATTTTTGTTTATCAGATTCACTAATGAAGATTGATTCGCAGACGTGTATCCATCCTCTGTTAGGATCATAATTATGCTTTACTTCCCTTGTGAATTCCCTGATTAGCTTAGCTTGTTTACAGAACATGGAGAAGGTCTACAAGTCTTACATTATGAAGTTGG</genome_strand>
        <mrna_strand>TAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTATCAGAGATATTGAGAAGAGAATAGCAGATTATACATTCATTCCTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGGACAAGGTCTACAAGTCTTACATTATGAAGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242162" ref_strand="+" ref_description="SGN-E242162 [cLED-37-P14]">
      <seq>taacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgatagcaagaccggtcagagtaaagatagcacggttcgtgcaagttcgggaatgtttttgaggagggggcgagataaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43447" stop="45852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43747" g_stop="43867" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="212" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44945" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="310" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44946" i_stop="45504" i_length="559">
            <donor d_prob="0.505" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45505" g_stop="45552" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="358" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E242162" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43747" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44945"/>
          <exon e_start="45505" e_stop="45552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAGGTTTGTAGTTGGTGATTTCTTTACATTCACTGATTGCCAGTTTGCCACAACAAGCATCTTTGAAGTCTTTTCATCATTCTATAATAATTTTCTTTTAGTAGCTTGGTTTAGAGACTTAATTCTTTTTTTCCCTTCATTCCAAACCAATATCTGATACTATTTCAGTTTGAGGACACCTCAAGATGTCTGCCTCCATCCTATTTAATAGTACTTTATGCAACTTCTACACAGAATAAGAACTACATTTTAGCTATGTTTTCCTTAAGGTATTAACTTTTCGATTGCTACTTACTGTTTTCCACTGCTATCAGAAAGTAGACAAATCTTACTAACATTTTTTATGCTGGGTTAAATGGTGTCATCTAAAGTAGGATGGAGGAAGGAATAGTTTTTTCCTATGTTGCTTGGACTCTTCAAAAATGAAATCGAATGTTTGTCGGATCCTTCAGAAGTAGTGCATTTTTGTAAGATACGACATCTGAGCGGCATCATTTTTTGGAGAGTCCGATCAACATAGGTTTTTTCTATGGACTGATGTTCTGACAGTTTCATATAACAGGGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAAT</genome_strand>
        <mrna_strand>TAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTGCAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301894" ref_strand="+" ref_description="SGN-E301894 [cLEW-25-N19]">
      <seq>tcaagttcaagcggttcaacttatatataggggaaggtgacggactggggaaaaaaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgatagcaagaccggtcagagtaaagatagcagggttcgtacaagttcgggaatgtttttgaggagggggcgagataaaattatcagaaatattgagaagagaatagcagattatacattcattcctgcagaacatggagaaggtctacaagtcttacattatgaagttggacagaagtatgagcctcattatgactacttccttgatgacttcaacaccaaaaatgggggccaacgtatagctactcttctcatgtatctatcagatgttgaagaaggaggtgagactgtttttccagcagcaaagggaaacttcagttctagtcctgggtggaatgagttgtcagaatgtgccaaagggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43540" stop="46799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43840" g_stop="43867" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="119" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44945" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="217" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44946" i_stop="45504" i_length="559">
            <donor d_prob="0.505" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45505" g_stop="45602" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="315" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45603" i_stop="46136" i_length="534">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.525" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46137" g_stop="46266" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="445" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46267" i_stop="46395" i_length="129">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46396" g_stop="46499" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="549" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E301894" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43840" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44945"/>
          <exon e_start="45505" e_stop="45602"/>
          <exon e_start="46137" e_stop="46266"/>
          <exon e_start="46396" e_stop="46499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAGGTTTGTAGTTGGTGATTTCTTTACATTCACTGATTGCCAGTTTGCCACAACAAGCATCTTTGAAGTCTTTTCATCATTCTATAATAATTTTCTTTTAGTAGCTTGGTTTAGAGACTTAATTCTTTTTTTCCCTTCATTCCAAACCAATATCTGATACTATTTCAGTTTGAGGACACCTCAAGATGTCTGCCTCCATCCTATTTAATAGTACTTTATGCAACTTCTACACAGAATAAGAACTACATTTTAGCTATGTTTTCCTTAAGGTATTAACTTTTCGATTGCTACTTACTGTTTTCCACTGCTATCAGAAAGTAGACAAATCTTACTAACATTTTTTATGCTGGGTTAAATGGTGTCATCTAAAGTAGGATGGAGGAAGGAATAGTTTTTTCCTATGTTGCTTGGACTCTTCAAAAATGAAATCGAATGTTTGTCGGATCCTTCAGAAGTAGTGCATTTTTGTAAGATACGACATCTGAGCGGCATCATTTTTTGGAGAGTCCGATCAACATAGGTTTTTTCTATGGACTGATGTTCTGACAGTTTCATATAACAGGGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTATCAGAAATATTGAGAAGAGAATAGCAGATTATACATTCATTCCTGCAGGTATGAGGACTGTGTGATACCATACAAAAATCATAGCGTATGAACTCTTTGTTGTCGTTATTATTGTCATTGTCATTGTCATCCACGAGTTCTTGTTAAAAAATTATAAATGGGAAACATTCTCCGATTACGTTCCTTATTTGTTTTTATAAGAAGCAATGGCTGCAAACTTAAAACCTCTTAAGTAGTAATCATTAAATTTCAAAATTTTCTATTACTTTAATTTCGAAGGTTTAGAAGTTAAGCTTAACTCAAGTGAGGTTTTCATTTTATTCATGTTAGTTGCAGAACTTAAATGTATATTGTCCCTGTCTAGAGATATCTTAGGCTGTTCTTTTGCCTGGCTTTCAAAATATGATATTACTAGTTTGATTTTCCTCTTCACAAAACAAAAACGCGAGTGAGTGATTCTATTTTTGTTTATCAGATTCACTAATGAAGATTGATTCGCAGACGTGTATCCATCCTCTGTTAGGATCATAATTATGCTTTACTTCCCTTGTGAATTCCCTGATTAGCTTAGCTTGTTTACAGAACATGGAGAAGGTCTACAAGTCTTACATTATGAAGTTGGACAGAAGTATGAGCCTCATTATGACTACTTCCTTGATGACTTCAACACCAAAAATGGGGGCCAACGTATAGCTACTCTTCTCATGTATCTGTAAGGCTTATAATTCCTCAAATAATTATATGATAAATATGGTAGAAGTTCTGATTTTTCTCTAAGTTGCATCCATAATGATGAATACACAGATTGGTTGTATAATTTGCTTATCTGGGGCATATGCAGATCAGATGTTGAAGAAGGAGGTGAGACTGTTTTTCCAGCAGCAAAGGGAAACTTCAGTTCTAGTCCTGGGTGGAATGAGTTGTCAGAATGTGCCAAAGGGGGCC</genome_strand>
        <mrna_strand>TCAAGTTCAAGCGGTTCAACTTATATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAAAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTATCAGAAATATTGAGAAGAGAATAGCAGATTATACATTCATTCCTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGGAGAAGGTCTACAAGTCTTACATTATGAAGTTGGACAGAAGTATGAGCCTCATTATGACTACTTCCTTGATGACTTCAACACCAAAAATGGGGGCCAACGTATAGCTACTCTTCTCATGTATCT.................................................................................................................................ATCAGATGTTGAAGAAGGAGGTGAGACTGTTTTTCCAGCAGCAAAGGGAAACTTCAGTTCTAGTCCTGGGTGGAATGAGTTGTCAGAATGTGCCAAAGGGGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612992" ref_strand="+" ref_description="SGN-E612992 [62761]">
      <seq>gttgaatggaggctagaaactggtcgcactcatcagatacgtgctcatgcgaagtacctaggtatacctcttatgggtgatgaagtgtatggaggtacgaagaacatggccctttcgcttcttcagcctaaaacaccaccaatgtttcatgggaaactttcacaattggtgtctcaaattgacagaccttgcctccatgctttaaccctcggatttaggcatccattcacaggcgagaatatacattttacgcggttacctcctcctgattttgctgagatattaagctatctacgtgccattaacactgagaaggttttatgaattcaacacaacatgatacattgttttgattgaatgtccatgtaaaaggagcagcagattctttgatactagttcaactaaattttctcatgcgctgacatctcgaacacagttttgataatgtaatagatagctataatgaatttattctttnggtggttatatagttaaattactctcctatatttaatcagcagaactcgagaaggcgacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="49271" stop="47795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48971" g_stop="48936" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48935" i_stop="48762" i_length="174">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48761" g_stop="48586" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="212" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48585" i_stop="48500" i_length="86">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48499" g_stop="48397" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="315" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48396" i_stop="48319" i_length="78">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48318" g_stop="48095" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="540" r_length="225" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E612992" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48971" e_stop="48936"/>
          <exon e_start="48761" e_stop="48586"/>
          <exon e_start="48499" e_stop="48397"/>
          <exon e_start="48318" e_stop="48095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAATGGAGGCTAGAAACTGGTCGCACTCATCAGGTACACAATATCACATGGATTCTTAGTTACTCGTGACAAATTTTCACTCTTCTGCCTAAACATTGTTAACTTCATTCTTTGCATCTTGATATACTACATTCTTTGAAATCTCAAACATATGTGCTTCAAATCTTTCTAGCCCTGTTATACTTGGCATTTGGTTTAATGAAACAGATACGTGCTCATGCGAAGCACCTAGGTATACCTCTTATGGGTGATGAAGTGTACGGAGGTACGAAGAACATGGCCCTTTCGCTTCTTCAGCCTAAAACACCACCAATGTTTCATGGGGAACTTTCACAATTGGTGTCTCAAATTGACAGACCTTGCCTCCATGCTTTAACCCTCGGGTAAACATTGAATATTATGTTGCATCAATTCAACATGACTAGATACATTTACTCGCATCACTAGTGTTATGTGAATTGATTTGCAGATTTAGGCATCCATTCACAGGCGAGAATATACACTTTACGCGGTTACCCCCTCCTGATTTTGCTGAGATATTAAGCGAGCTACGTGCCATTAAAACTGAGAAGGTAACTCATCCAAACTACTACTAATACTAATAATCCCAATCCTCAGCTCACATTTGGTGCTGAGTAATTTACTTTCAGGTTTTATGAATTCAACACAACATGATACATTGTTTTGATTGAATGTCCATGTAAAAGGAGCAGCAGATTCTTTGATACTAGATCAACTTAATTTTCTCATACGCTGACATCTCGAACACAGTTGTGATAATGTAATAGATAGCTATAATGAGTTTATTCTTTT-CTTGTTATATTGTTAAATTACTCTCCTATATTTAATCAGCAGAAGTCGAGAAGGCGACACC</genome_strand>
        <mrna_strand>GTTGAATGGAGGCTAGAAACTGGTCGCACTCATCAG..............................................................................................................................................................................ATACGTGCTCATGCGAAGTACCTAGGTATACCTCTTATGGGTGATGAAGTGTATGGAGGTACGAAGAACATGGCCCTTTCGCTTCTTCAGCCTAAAACACCACCAATGTTTCATGGGAAACTTTCACAATTGGTGTCTCAAATTGACAGACCTTGCCTCCATGCTTTAACCCTCGG......................................................................................ATTTAGGCATCCATTCACAGGCGAGAATATACATTTTACGCGGTTACCTCCTCCTGATTTTGCTGAGATATTAAGCTATCTACGTGCCATTAACACTGAGAAG..............................................................................GTTTTATGAATTCAACACAACATGATACATTGTTTTGATTGAATGTCCATGTAAAAGGAGCAGCAGATTCTTTGATACTAGTTCAACTAAATTTTCTCATGCGCTGACATCTCGAACACAGTTTTGATAATGTAATAGATAGCTATAATGAATTTATTCTTTNGGTGGTTATATAGTTAAATTACTCTCCTATATTTAATCAGCAGAACTCGAGAAGGCGACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603847" ref_strand="+" ref_description="SGN-E603847 [67035]">
      <seq>gttctctttgcttccacaaaacccaaaaccattttctctttctagggtttcaagcttcatttgcagagcatttaccaaattccccggagactcatattccgacgactcaccggatgaaattcccggccggaggtccaattactccggtgtcaagctcgaagaaacagttgatggcaaaaccggaaagctccgactagattcatgggtcagttcccggatcgacggagttagtagagctcgtgttcagtccagcatccgctctggccttgtttccgtcaatggacgtgtcactgataaggtctcacatatggtaaaaggtggagataaggttgattgtacaatagctgatttgaagcctttaagagctgaaccagaggatataccattggatatagtgtatgaagatgagcatgttcttgttgttaacaagcctgctcacatggtagttcatcctgcaccaggaaatgttactggaacgcttgtaagtggtattcttcatcactgcagtcttcctactgtttcatttctgggtgaggaagtgctttctgatgtggaggatgcttctgatgatgagttgaacgtgttttctgccaatcgaagtcctaattatgatggctcttctgttatgtgtgagtcatctgttcggccaggaattgtgcataggttagacaaaggaacaagtggattgcttgttgtagctaagaacgagcattccttgttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="51393" stop="49227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51093" g_stop="50796" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50795" i_stop="50489" i_length="307">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50488" g_stop="50345" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="442" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50344" i_stop="49788" i_length="557">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49787" g_stop="49527" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="703" r_length="261" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49526" i_stop="49395" i_length="132">
            <donor d_prob="0.702" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49394" g_stop="49372" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="725" r_length="22" r_score="0.870"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E603847" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51093" e_stop="50796"/>
          <exon e_start="50488" e_stop="50345"/>
          <exon e_start="49787" e_stop="49527"/>
          <exon e_start="49394" e_stop="49372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCTTTGCTTCCACAAAACCCAAAACCAATTTCTCTTTCTAGGGTTTCAAGCTTCATTTGCAGAGCATTTACCAAATTCCCCGGAGACTCAGATTCCGACGACTCACCGGATGAAATTCCCGGCCGGAGGTCCAATTACTCCGGCGTCAAGCTCGAAGAAACAGTTGATAGCAAAACCGGAAAGCTCCGACTAGATTCATGGGTCAGTTCCCGGATCGACGGAGTTAGTAGAGCTCGTGTTCAGTCTAGCATCCGCTCTGGTCTTGTTTCCGTCAATGGACGCGTCACTGATAAGGTCCCACTGCTTTACACTCAAAATTATATATGTAGTAAAAAAGAATTTGAAATAATAATCCATCTTCCAATAATATTTGTTTTACTGGTTTTAAGCTTGATACGGAGTTTAAGAGGTAAGAGACTTTCAAATGTTGTAGAATGTACCAAAATATCATTCAAGTTCGTGTCAACATGTCACGTGGAAAATTGAAATTAAGTCGTTGTAAGAAAAGCATTTCAACTCGATATTTGAAGTCATTTCAATGGCTTATAATTCTGGATTTTTCTCAGTTTTGTTGGTAAAGATTTGTTTTTTTACTTTGCAGGTTTCACATATGGTAAAAGGTGGAGATAAGGTTGATTGTACAATAGCTGATTTGAAGCCTTTAAGAGCTGAACCAGAGGATATACCATTGGATATAGTGTATGAAGATGAGCATGTTCTTGTTGTTAACAAGCCTGCTCACATGGTAAGTTCTAGAATAATCTACTTTCCTCCGTTTTAATTTGTTTGTTTGATTTTGACTTGTCACAGAGGTGGTGAATAAAAGAAAGAACACTTTTTGAAACAGACTAAAAAGGAAAGTAAAACAAACAAATTGAAACGGAGAAAGTAGTTGTTTTGGGCTTGTTGTGCATCTATCTTTGATGGAACATCAATTTGCTTTTTTAGCATGTAAATGGAGATATTCAAGCATTGGACCACGGTGGAATCACCTACCTTAGTTCTTTTTTATGGTGTCTTGTTCGATAATCGGTATCTACATTATGTGCTCTTGGATGAGTTATTTTTTTGTCCATTTCTGGAGCACAAATTCATTAACCGTGTAGATACTCATTGTTAATCAGGAAGAGAACTTTGATAGATGAAGTTTGACGTAATTGTTCCATTCTGGATGTCAGTGTACTTGAACCTTTCCTTAGTTCTAGTAGTGATACAGATCGATTGAAACTGATAACGCGGATGTTTGAACTATTACCTGACTGTTCTGTAAAAGCTCAATGGGATTTGTTTTCTTCAATACAGGTAGTTCATCCTGCACCAGGAAATGCTACTGGAACGCTTGTAAGTGGTATTCTTCATCACTGCAGTCTTCCTACTGTTTCATTTCCGGGTGAGGAAGTGCTTTCTGATGGGGAAGATGCTTCTGATGATGAGTTGAACATATTTTCTCCCAATCGAAGTCCTAATTATGATGACTCTTCTGTTATGTGTGAGTCATCTGTTAGGCCAGGAATTGTGCATAGGTTAGACAAAGGAACAAGTGGATTGCTTGTTGTAGCGAAGGTGATTCCTACTTACAGGCTCTGAAGATGGGTAATTCATGTCTAGATATCTCCTTTACCTTTTGAGAAAATTGTGCTTGTGATACTAGATTTATCTTGCTCAACTTAAATATCTTTGATGTTGTCTCTACAGAACGAGCATTCCCTTGCCGATCT</genome_strand>
        <mrna_strand>GTTCTCTTTGCTTCCACAAAACCCAAAACCATTTTCTCTTTCTAGGGTTTCAAGCTTCATTTGCAGAGCATTTACCAAATTCCCCGGAGACTCATATTCCGACGACTCACCGGATGAAATTCCCGGCCGGAGGTCCAATTACTCCGGTGTCAAGCTCGAAGAAACAGTTGATGGCAAAACCGGAAAGCTCCGACTAGATTCATGGGTCAGTTCCCGGATCGACGGAGTTAGTAGAGCTCGTGTTCAGTCCAGCATCCGCTCTGGCCTTGTTTCCGTCAATGGACGTGTCACTGATAAG...................................................................................................................................................................................................................................................................................................................GTCTCACATATGGTAAAAGGTGGAGATAAGGTTGATTGTACAATAGCTGATTTGAAGCCTTTAAGAGCTGAACCAGAGGATATACCATTGGATATAGTGTATGAAGATGAGCATGTTCTTGTTGTTAACAAGCCTGCTCACATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTCATCCTGCACCAGGAAATGTTACTGGAACGCTTGTAAGTGGTATTCTTCATCACTGCAGTCTTCCTACTGTTTCATTTCTGGGTGAGGAAGTGCTTTCTGATGTGGAGGATGCTTCTGATGATGAGTTGAACGTGTTTTCTGCCAATCGAAGTCCTAATTATGATGGCTCTTCTGTTATGTGTGAGTCATCTGTTCGGCCAGGAATTGTGCATAGGTTAGACAAAGGAACAAGTGGATTGCTTGTTGTAGCTAAG....................................................................................................................................AACGAGCATT-CCTTGTTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478749" ref_strand="+" ref_description="SGN-E478749 [cSTD-6-J8]">
      <seq>gaacacagtggaatcacctaccgtagttttcttttatggagtcttgttcgatttatgtgctcttggattagagggatttgagagttttattttgttgtccatttctagagcacaagttcattaaccatgaagatactcattgttaataaggaagagaactttgatacatgaagtttgacgtaatagttccattctggatgtcagtgtacttaaccatttccttagttctagtagtgatacagattgattgaaattaataacacggatgtttgaactactacttgactgttttagaaaagctcaatgggatttttgtttcaatacaggtagttcatcctgcaccaggaaatgctactggaacgcttgtaagtggtattcttcatcactgcagtcttcctactgtttcatttctgggtgaggaagtgctttctgatgcggaggatgcttctgatgatgagttgaatgtgttttctgccaatcgaagtcctaattatgatgactcttctgttatgtgtgagtcatctgttcggccaggaattgtgcataggttagacaaggaacaagtggattgcttgttgtagcgaaggtgattcctacttacaggctctgaagatgggtaattcatgtctagttatctctttccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="50354" stop="49166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50114" g_stop="49464" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E478749" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50114" e_stop="49464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCACGGTGGAATCACCTACCTTAGTTCTTTTTTATGGTGTCTTGTTCGA-TAATCGGTATCTACATTATGTGCTCTTGGATGAGTTATTTTTTTGTCCATTTCTGGAGCACAAATTCATTAACCGTGTAGATACTCATTGTTAATCAGGAAGAGAACTTTGATAGATGAAGTTTGACGTAATTGTTCCATTCTGGATGTCAGTGTACTTGAACCTTTCCTTAGTTCTAGTAGTGATACAGATCGATTGAAACTGATAACGCGGATGTTTGAACTATTACCTGACTGTTCTGTAAAAGCTCAATGGGATTTGTTTTCTTCAATACAGGTAGTTCATCCTGCACCAGGAAATGCTACTGGAACGCTTGTAAGTGGTATTCTTCATCACTGCAGTCTTCCTACTGTTTCATTTCCGGGTGAGGAAGTGCTTTCTGATGGGGAAGATGCTTCTGATGATGAGTTGAACATATTTTCTCCCAATCGAAGTCCTAATTATGATGACTCTTCTGTTATGTGTGAGTCATCTGTTAGGCCAGGAATTGTGCATAGGTTAGACAAAGGAACAAGTGGATTGCTTGTTGTAGCGAAGGTGATTCCTACTTACAGGCTCTGAAGATGGGTAATTCATGTCTAGATATCTCCTTTACCTTTT</genome_strand>
        <mrna_strand>GAACACAGTGGAATCACCTACCGTAGTTTTCTTTTATGGAGTCTTGTTCGATTTATGTGCTCTTGGATTAGAGGGATTTGAGAGTTTTATTTTGTTGTCCATTTCTAGAGCACAAGTTCATTAACCATGAAGATACTCATTGTTAATAAGGAAGAGAACTTTGATACATGAAGTTTGACGTAATAGTTCCATTCTGGATGTCAGTGTACTTAACCATTTCCTTAGTTCTAGTAGTGATACAGATTGATTGAAATTAATAACACGGATGTTTGAACTACTACTTGACTGTTTTAGAAAAGCTCAATGGGATTT-TTGT-TTCAATACAGGTAGTTCATCCTGCACCAGGAAATGCTACTGGAACGCTTGTAAGTGGTATTCTTCATCACTGCAGTCTTCCTACTGTTTCATTTCTGGGTGAGGAAGTGCTTTCTGATGCGGAGGATGCTTCTGATGATGAGTTGAATGTGTTTTCTGCCAATCGAAGTCCTAATTATGATGACTCTTCTGTTATGTGTGAGTCATCTGTTCGGCCAGGAATTGTGCATAGGTTAGAC-AAGGAACAAGTGGATTGCTTGTTGTAGCGAAGGTGATTCCTACTTACAGGCTCTGAAGATGGGTAATTCATGTCTAGTTATCT-CTTT-CCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379855" ref_strand="+" ref_description="SGN-E379855 [TUS-3-D8]">
      <seq>agactgcagtgatgaagaataccacttacaagcgttccagtagcatttcctggtgcaggatgaactacctgtattgaagaaaacaaatcccattgagcttttacagaacagtcaggtaatagttcaaacatccgcgttatcagtttcaatcgatctgtatcactactagaactaaggaaaggttcaagtacactgacatccagaatggaacaattacgtcaaacttcatctatcaaagttctcttcctgattaacaatgagtatctacacggttaatgaatttgtgctccagaaatggacaaaaaaataactcatccaagagcacataatgtagataccgattatcgaacaagacaccataaaaaagaactaaggtaggtgattccaccgtggtccaatgcttgaatatctccatttacatgctaaaaaagcaaattgatgttccatcaaagatagatgcacaacaagcccaaaacaactactttctccgtttcaatttgtttgttttactttcctttttagtctgtttcaaaaagtgttctttcttttattcaccacctctgtgacaagtcaaaatcaaacaaacaaattaaaacggaggaaagtagattattctagaacttaccatgtgagcaggcttgttaacaacaagaacatgctcatcttcatacactatatccaatggtatatcctctggttcagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="49420" stop="50724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49720" g_stop="50424" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E379855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49720" e_stop="50424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTGCAGTGATGAAGAATACCACTTACAAGCGTTCCAGTAGCATTTCCTGGTGCAGGATGAACTACCTGTATTGAAGAAAACAAATCCCATTGAGCTTTTACAGAACAGTCAGGTAATAGTTCAAACATCCGCGTTATCAGTTTCAATCGATCTGTATCACTACTAGAACTAAGGAAAGGTTCAAGTACACTGACATCCAGAATGGAACAATTACGTCAAACTTCATCTATCAAAGTTCTCTTCCTGATTAACAATGAGTATCTACACGGTTAATGAATTTGTGCTCCAGAAATGGACAAAAAAATAACTCATCCAAGAGCACATAATGTAGATACCGATTATCGAACAAGACACCATAAAAAAGAACTAAGGTAGGTGATTCCACCGTGGTCCAATGCTTGAATATCTCCATTTACATGCTAAAAAAGCAAATTGATGTTCCATCAAAGATAGATGCACAACAAGCCCAAAACAACTACTTTCTCCGTTTCAATTTGTTTGTTTTACTTTCCTTTTTAGTCTGTTTCAAAAAGTGTTCTTTCTTTTATTCACCACCTCTGTGACAAGTCAAAATCAAACAAACAAATTAAAACGGAGGAAAGTAGATTATTCTAGAACTTACCATGTGAGCAGGCTTGTTAACAACAAGAACATGCTCATCTTCATACACTATATCCAATGGTATATCCTCTGGTTCAGCTC</genome_strand>
        <mrna_strand>AGACTGCAGTGATGAAGAATACCACTTACAAGCGTTCCAGTAGCATTTCCTGGTGCAGGATGAACTACCTGTATTGAAGAAAACAAATCCCATTGAGCTTTTACAGAACAGTCAGGTAATAGTTCAAACATCCGCGTTATCAGTTTCAATCGATCTGTATCACTACTAGAACTAAGGAAAGGTTCAAGTACACTGACATCCAGAATGGAACAATTACGTCAAACTTCATCTATCAAAGTTCTCTTCCTGATTAACAATGAGTATCTACACGGTTAATGAATTTGTGCTCCAGAAATGGACAAAAAAATAACTCATCCAAGAGCACATAATGTAGATACCGATTATCGAACAAGACACCATAAAAAAGAACTAAGGTAGGTGATTCCACCGTGGTCCAATGCTTGAATATCTCCATTTACATGCTAAAAAAGCAAATTGATGTTCCATCAAAGATAGATGCACAACAAGCCCAAAACAACTACTTTCTCCGTTTCAATTTGTTTGTTTTACTTTCCTTTTTAGTCTGTTTCAAAAAGTGTTCTTTCTTTTATTCACCACCTCTGTGACAAGTCAAAATCAAACAAACAAATTAAAACGGAGGAAAGTAGATTATTCTAGAACTTACCATGTGAGCAGGCTTGTTAACAACAAGAACATGCTCATCTTCATACACTATATCCAATGGTATATCCTCTGGTTCAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376588" ref_strand="+" ref_description="SGN-E376588 [TUS-18-G18]">
      <seq>agactgcagtgatgaagaataccacttacaagcgttccagtagcatttcctggtgcaggatgaactacctgtattgaagaaaacaaatcccattgagcttttacagaacagtcaggtaatagttcaaacatccgcgttatcagtttcaatcgatctgtatcactactagaactaaggaaaggttcaagtacactgacatccagaatggaacaattacgtcaaacttcatctatcaaagttctcttcctgattaacaatgagtatctacacggttaatgaatttgtgctccagaaatggacaaaaaaataactcatccaagagcacataatgtagataccgattatcgaacaagacaccataaaaaagaactaaggtaggtgattccaccgtggtccaatgcttgaatatctccatttacatgctaaaaaagcaaattgatgttccatcaaagatagatgcacaacaagcccaaaacaactactttctccgtttcaatttgtttgttttactttcctttttagtctgtttcaaaaagtgttctttcttttattcaccacctctgtgacaagtcaaaatcaaacaaacaaattaaaacggaggaaagtagattattctagaacttaccatgtgagcaggcttgttaacaacaagaacatgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="49420" stop="50681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49720" g_stop="50381" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E376588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49720" e_stop="50381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTGCAGTGATGAAGAATACCACTTACAAGCGTTCCAGTAGCATTTCCTGGTGCAGGATGAACTACCTGTATTGAAGAAAACAAATCCCATTGAGCTTTTACAGAACAGTCAGGTAATAGTTCAAACATCCGCGTTATCAGTTTCAATCGATCTGTATCACTACTAGAACTAAGGAAAGGTTCAAGTACACTGACATCCAGAATGGAACAATTACGTCAAACTTCATCTATCAAAGTTCTCTTCCTGATTAACAATGAGTATCTACACGGTTAATGAATTTGTGCTCCAGAAATGGACAAAAAAATAACTCATCCAAGAGCACATAATGTAGATACCGATTATCGAACAAGACACCATAAAAAAGAACTAAGGTAGGTGATTCCACCGTGGTCCAATGCTTGAATATCTCCATTTACATGCTAAAAAAGCAAATTGATGTTCCATCAAAGATAGATGCACAACAAGCCCAAAACAACTACTTTCTCCGTTTCAATTTGTTTGTTTTACTTTCCTTTTTAGTCTGTTTCAAAAAGTGTTCTTTCTTTTATTCACCACCTCTGTGACAAGTCAAAATCAAACAAACAAATTAAAACGGAGGAAAGTAGATTATTCTAGAACTTACCATGTGAGCAGGCTTGTTAACAACAAGAACATGCTCA</genome_strand>
        <mrna_strand>AGACTGCAGTGATGAAGAATACCACTTACAAGCGTTCCAGTAGCATTTCCTGGTGCAGGATGAACTACCTGTATTGAAGAAAACAAATCCCATTGAGCTTTTACAGAACAGTCAGGTAATAGTTCAAACATCCGCGTTATCAGTTTCAATCGATCTGTATCACTACTAGAACTAAGGAAAGGTTCAAGTACACTGACATCCAGAATGGAACAATTACGTCAAACTTCATCTATCAAAGTTCTCTTCCTGATTAACAATGAGTATCTACACGGTTAATGAATTTGTGCTCCAGAAATGGACAAAAAAATAACTCATCCAAGAGCACATAATGTAGATACCGATTATCGAACAAGACACCATAAAAAAGAACTAAGGTAGGTGATTCCACCGTGGTCCAATGCTTGAATATCTCCATTTACATGCTAAAAAAGCAAATTGATGTTCCATCAAAGATAGATGCACAACAAGCCCAAAACAACTACTTTCTCCGTTTCAATTTGTTTGTTTTACTTTCCTTTTTAGTCTGTTTCAAAAAGTGTTCTTTCTTTTATTCACCACCTCTGTGACAAGTCAAAATCAAACAAACAAATTAAAACGGAGGAAAGTAGATTATTCTAGAACTTACCATGTGAGCAGGCTTGTTAACAACAAGAACATGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476358" ref_strand="+" ref_description="SGN-E476358 [cSTB-44-D9]">
      <seq>ctctttctagggtttcaagcttcatttgcagagcatttaccaaattccccggagactcagattccgacgactcaccggatgaaattcccggccggaggtccaattactccggcgtcaagctcgaagaaacagttgatggcaaaaccggaaagctccgactagattcatgggtcagttcccgcatcgacggagttagcagagctcgtgttcagtctagcatccgctctggccttgtttccgtcaatggtcgtgtcactgataaggtctcacatatggtaaaaggtggagataaggttgattgtacaatagctgatttgaagcctttaagagctgaaccagaggatataccattggatatagtgtatgaagatgagcatgttcttgttgttaacaagcctgctcacatggtagttcatcctgcaccaggaaatgctactggaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="51358" stop="49451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51058" g_stop="50796" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50795" i_stop="50489" i_length="307">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50488" g_stop="50345" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="407" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50344" i_stop="49788" i_length="557">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49787" g_stop="49751" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="444" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E476358" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51058" e_stop="50796"/>
          <exon e_start="50488" e_stop="50345"/>
          <exon e_start="49787" e_stop="49751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTAGGGTTTCAAGCTTCATTTGCAGAGCATTTACCAAATTCCCCGGAGACTCAGATTCCGACGACTCACCGGATGAAATTCCCGGCCGGAGGTCCAATTACTCCGGCGTCAAGCTCGAAGAAACAGTTGATAGCAAAACCGGAAAGCTCCGACTAGATTCATGGGTCAGTTCCCGGATCGACGGAGTTAGTAGAGCTCGTGTTCAGTCTAGCATCCGCTCTGGTCTTGTTTCCGTCAATGGACGCGTCACTGATAAGGTCCCACTGCTTTACACTCAAAATTATATATGTAGTAAAAAAGAATTTGAAATAATAATCCATCTTCCAATAATATTTGTTTTACTGGTTTTAAGCTTGATACGGAGTTTAAGAGGTAAGAGACTTTCAAATGTTGTAGAATGTACCAAAATATCATTCAAGTTCGTGTCAACATGTCACGTGGAAAATTGAAATTAAGTCGTTGTAAGAAAAGCATTTCAACTCGATATTTGAAGTCATTTCAATGGCTTATAATTCTGGATTTTTCTCAGTTTTGTTGGTAAAGATTTGTTTTTTTACTTTGCAGGTTTCACATATGGTAAAAGGTGGAGATAAGGTTGATTGTACAATAGCTGATTTGAAGCCTTTAAGAGCTGAACCAGAGGATATACCATTGGATATAGTGTATGAAGATGAGCATGTTCTTGTTGTTAACAAGCCTGCTCACATGGTAAGTTCTAGAATAATCTACTTTCCTCCGTTTTAATTTGTTTGTTTGATTTTGACTTGTCACAGAGGTGGTGAATAAAAGAAAGAACACTTTTTGAAACAGACTAAAAAGGAAAGTAAAACAAACAAATTGAAACGGAGAAAGTAGTTGTTTTGGGCTTGTTGTGCATCTATCTTTGATGGAACATCAATTTGCTTTTTTAGCATGTAAATGGAGATATTCAAGCATTGGACCACGGTGGAATCACCTACCTTAGTTCTTTTTTATGGTGTCTTGTTCGATAATCGGTATCTACATTATGTGCTCTTGGATGAGTTATTTTTTTGTCCATTTCTGGAGCACAAATTCATTAACCGTGTAGATACTCATTGTTAATCAGGAAGAGAACTTTGATAGATGAAGTTTGACGTAATTGTTCCATTCTGGATGTCAGTGTACTTGAACCTTTCCTTAGTTCTAGTAGTGATACAGATCGATTGAAACTGATAACGCGGATGTTTGAACTATTACCTGACTGTTCTGTAAAAGCTCAATGGGATTTGTTTTCTTCAATACAGGTAGTTCATCCTGCACCAGGAAATGCTACTGGAACGC</genome_strand>
        <mrna_strand>CTCTTTCTAGGGTTTCAAGCTTCATTTGCAGAGCATTTACCAAATTCCCCGGAGACTCAGATTCCGACGACTCACCGGATGAAATTCCCGGCCGGAGGTCCAATTACTCCGGCGTCAAGCTCGAAGAAACAGTTGATGGCAAAACCGGAAAGCTCCGACTAGATTCATGGGTCAGTTCCCGCATCGACGGAGTTAGCAGAGCTCGTGTTCAGTCTAGCATCCGCTCTGGCCTTGTTTCCGTCAATGGTCGTGTCACTGATAAG...................................................................................................................................................................................................................................................................................................................GTCTCACATATGGTAAAAGGTGGAGATAAGGTTGATTGTACAATAGCTGATTTGAAGCCTTTAAGAGCTGAACCAGAGGATATACCATTGGATATAGTGTATGAAGATGAGCATGTTCTTGTTGTTAACAAGCCTGCTCACATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTCATCCTGCACCAGGAAATGCTACTGGAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439956" ref_strand="+" ref_description="SGN-E439956 [cSTA-14-E16]">
      <seq>tttgctaccacaaaacccaaaaccattttctctttctagggtttcaagcttcatttgcagagcatttaccaaattccccggagactcagattccgacgactcaccggatgaaattcccggccggaggtccaattactccggcgtcaagctcgaagaaacagttgatggcaaaaccggaaagctcagactagattcatgggtcagttcccgcatcgacggagttagcagagctcgtgttcagtctagcatccgctctggccttgtttccgtcaatggtcgtgtcactgataaggtttcacatatggtaaaaggtggagataaggttgattgtacaatagctgatttgaagcctttaagagctgaacctgaggatataccattggatatagtgtatgaagatgagcatgttcttgttgttaacaagcctgctcacatggtagttcatcctgcaccaggaaatgctactggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="51387" stop="49454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51087" g_stop="50796" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50795" i_stop="50489" i_length="307">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50488" g_stop="50345" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="436" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50344" i_stop="49788" i_length="557">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49787" g_stop="49754" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="470" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E439956" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51087" e_stop="50796"/>
          <exon e_start="50488" e_stop="50345"/>
          <exon e_start="49787" e_stop="49754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTTCCACAAAACCCAAAACCAATTTCTCTTTCTAGGGTTTCAAGCTTCATTTGCAGAGCATTTACCAAATTCCCCGGAGACTCAGATTCCGACGACTCACCGGATGAAATTCCCGGCCGGAGGTCCAATTACTCCGGCGTCAAGCTCGAAGAAACAGTTGATAGCAAAACCGGAAAGCTCCGACTAGATTCATGGGTCAGTTCCCGGATCGACGGAGTTAGTAGAGCTCGTGTTCAGTCTAGCATCCGCTCTGGTCTTGTTTCCGTCAATGGACGCGTCACTGATAAGGTCCCACTGCTTTACACTCAAAATTATATATGTAGTAAAAAAGAATTTGAAATAATAATCCATCTTCCAATAATATTTGTTTTACTGGTTTTAAGCTTGATACGGAGTTTAAGAGGTAAGAGACTTTCAAATGTTGTAGAATGTACCAAAATATCATTCAAGTTCGTGTCAACATGTCACGTGGAAAATTGAAATTAAGTCGTTGTAAGAAAAGCATTTCAACTCGATATTTGAAGTCATTTCAATGGCTTATAATTCTGGATTTTTCTCAGTTTTGTTGGTAAAGATTTGTTTTTTTACTTTGCAGGTTTCACATATGGTAAAAGGTGGAGATAAGGTTGATTGTACAATAGCTGATTTGAAGCCTTTAAGAGCTGAACCAGAGGATATACCATTGGATATAGTGTATGAAGATGAGCATGTTCTTGTTGTTAACAAGCCTGCTCACATGGTAAGTTCTAGAATAATCTACTTTCCTCCGTTTTAATTTGTTTGTTTGATTTTGACTTGTCACAGAGGTGGTGAATAAAAGAAAGAACACTTTTTGAAACAGACTAAAAAGGAAAGTAAAACAAACAAATTGAAACGGAGAAAGTAGTTGTTTTGGGCTTGTTGTGCATCTATCTTTGATGGAACATCAATTTGCTTTTTTAGCATGTAAATGGAGATATTCAAGCATTGGACCACGGTGGAATCACCTACCTTAGTTCTTTTTTATGGTGTCTTGTTCGATAATCGGTATCTACATTATGTGCTCTTGGATGAGTTATTTTTTTGTCCATTTCTGGAGCACAAATTCATTAACCGTGTAGATACTCATTGTTAATCAGGAAGAGAACTTTGATAGATGAAGTTTGACGTAATTGTTCCATTCTGGATGTCAGTGTACTTGAACCTTTCCTTAGTTCTAGTAGTGATACAGATCGATTGAAACTGATAACGCGGATGTTTGAACTATTACCTGACTGTTCTGTAAAAGCTCAATGGGATTTGTTTTCTTCAATACAGGTAGTTCATCCTGCACCAGGAAATGCTACTGGAA</genome_strand>
        <mrna_strand>TTTGCTACCACAAAACCCAAAACCATTTTCTCTTTCTAGGGTTTCAAGCTTCATTTGCAGAGCATTTACCAAATTCCCCGGAGACTCAGATTCCGACGACTCACCGGATGAAATTCCCGGCCGGAGGTCCAATTACTCCGGCGTCAAGCTCGAAGAAACAGTTGATGGCAAAACCGGAAAGCTCAGACTAGATTCATGGGTCAGTTCCCGCATCGACGGAGTTAGCAGAGCTCGTGTTCAGTCTAGCATCCGCTCTGGCCTTGTTTCCGTCAATGGTCGTGTCACTGATAAG...................................................................................................................................................................................................................................................................................................................GTTTCACATATGGTAAAAGGTGGAGATAAGGTTGATTGTACAATAGCTGATTTGAAGCCTTTAAGAGCTGAACCTGAGGATATACCATTGGATATAGTGTATGAAGATGAGCATGTTCTTGTTGTTAACAAGCCTGCTCACATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTCATCCTGCACCAGGAAATGCTACTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476428" ref_strand="+" ref_description="SGN-E476428 [cSTB-44-D10]">
      <seq>ctctttctagggtttcaagcttcatttgcagagcatttaccaaattccccggagactcagattccgacgactcaccggatgaaattcccggccggaggtccaattactccggcgtcaagctcgaagaaacagttgatggcaaaaccggaaagctccgactagattcatgggtcagttcccgcatcgacagagttagcagagctcgtgttcagtctagcatccgctctggccttgtttccgtcaatggtcgtgtcactgataaggtctcacatatggtaaaaggtggagataaagttgattgtacaatagctgatttgaagcctttaagagctgaaccagaggatataccattggatatagtgtatgaagatgagcatgttcttgttgttaacaagcctgctcacatggtagttcatcctgcaccaggaaatgctactggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="51358" stop="49454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51058" g_stop="50796" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50795" i_stop="50489" i_length="307">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50488" g_stop="50345" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="407" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50344" i_stop="49788" i_length="557">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49787" g_stop="49754" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="441" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E476428" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51058" e_stop="50796"/>
          <exon e_start="50488" e_stop="50345"/>
          <exon e_start="49787" e_stop="49754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTAGGGTTTCAAGCTTCATTTGCAGAGCATTTACCAAATTCCCCGGAGACTCAGATTCCGACGACTCACCGGATGAAATTCCCGGCCGGAGGTCCAATTACTCCGGCGTCAAGCTCGAAGAAACAGTTGATAGCAAAACCGGAAAGCTCCGACTAGATTCATGGGTCAGTTCCCGGATCGACGGAGTTAGTAGAGCTCGTGTTCAGTCTAGCATCCGCTCTGGTCTTGTTTCCGTCAATGGACGCGTCACTGATAAGGTCCCACTGCTTTACACTCAAAATTATATATGTAGTAAAAAAGAATTTGAAATAATAATCCATCTTCCAATAATATTTGTTTTACTGGTTTTAAGCTTGATACGGAGTTTAAGAGGTAAGAGACTTTCAAATGTTGTAGAATGTACCAAAATATCATTCAAGTTCGTGTCAACATGTCACGTGGAAAATTGAAATTAAGTCGTTGTAAGAAAAGCATTTCAACTCGATATTTGAAGTCATTTCAATGGCTTATAATTCTGGATTTTTCTCAGTTTTGTTGGTAAAGATTTGTTTTTTTACTTTGCAGGTTTCACATATGGTAAAAGGTGGAGATAAGGTTGATTGTACAATAGCTGATTTGAAGCCTTTAAGAGCTGAACCAGAGGATATACCATTGGATATAGTGTATGAAGATGAGCATGTTCTTGTTGTTAACAAGCCTGCTCACATGGTAAGTTCTAGAATAATCTACTTTCCTCCGTTTTAATTTGTTTGTTTGATTTTGACTTGTCACAGAGGTGGTGAATAAAAGAAAGAACACTTTTTGAAACAGACTAAAAAGGAAAGTAAAACAAACAAATTGAAACGGAGAAAGTAGTTGTTTTGGGCTTGTTGTGCATCTATCTTTGATGGAACATCAATTTGCTTTTTTAGCATGTAAATGGAGATATTCAAGCATTGGACCACGGTGGAATCACCTACCTTAGTTCTTTTTTATGGTGTCTTGTTCGATAATCGGTATCTACATTATGTGCTCTTGGATGAGTTATTTTTTTGTCCATTTCTGGAGCACAAATTCATTAACCGTGTAGATACTCATTGTTAATCAGGAAGAGAACTTTGATAGATGAAGTTTGACGTAATTGTTCCATTCTGGATGTCAGTGTACTTGAACCTTTCCTTAGTTCTAGTAGTGATACAGATCGATTGAAACTGATAACGCGGATGTTTGAACTATTACCTGACTGTTCTGTAAAAGCTCAATGGGATTTGTTTTCTTCAATACAGGTAGTTCATCCTGCACCAGGAAATGCTACTGGAA</genome_strand>
        <mrna_strand>CTCTTTCTAGGGTTTCAAGCTTCATTTGCAGAGCATTTACCAAATTCCCCGGAGACTCAGATTCCGACGACTCACCGGATGAAATTCCCGGCCGGAGGTCCAATTACTCCGGCGTCAAGCTCGAAGAAACAGTTGATGGCAAAACCGGAAAGCTCCGACTAGATTCATGGGTCAGTTCCCGCATCGACAGAGTTAGCAGAGCTCGTGTTCAGTCTAGCATCCGCTCTGGCCTTGTTTCCGTCAATGGTCGTGTCACTGATAAG...................................................................................................................................................................................................................................................................................................................GTCTCACATATGGTAAAAGGTGGAGATAAAGTTGATTGTACAATAGCTGATTTGAAGCCTTTAAGAGCTGAACCAGAGGATATACCATTGGATATAGTGTATGAAGATGAGCATGTTCTTGTTGTTAACAAGCCTGCTCACATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTCATCCTGCACCAGGAAATGCTACTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725413" ref_strand="+" ref_description="SGN-E725413 [LA03AC03]">
      <seq>gagaataacgctaatcctttccatcctcacgggacattggcgatggtagcactcaatactacgtcgttctctttgcttccacaaaacccaaaaccaatttctctttctagggtttcaagcttcatttgcagagcatttaccaaattccccggagactcagattccgacgactcaccggatgaaattcccggccggaggtccaattactccggcgtcaagctcgaagaaacagttgatagcaaaaccggaaagctccgactagattcatgggtcagttcccggatcgacggagttagtagagctcgtgttcagtctagcatccgctctggtcttgtttccgtcaatggacgcgtcactgataaggtttcacatatggtacaaggtggcgataaggttgattgtacaatagctgatttgaagcctttaagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="51458" stop="50121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51158" g_stop="50796" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50795" i_stop="50489" i_length="307">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50488" g_stop="50421" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="431" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E725413" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51158" e_stop="50796"/>
          <exon e_start="50488" e_stop="50421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATAACGCTAATCCTTTCCATCCTCACGGGACATTGGCGATGGTAGCACTCAATACTACGTCGTTCTCTTTGCTTCCACAAAACCCAAAACCAATTTCTCTTTCTAGGGTTTCAAGCTTCATTTGCAGAGCATTTACCAAATTCCCCGGAGACTCAGATTCCGACGACTCACCGGATGAAATTCCCGGCCGGAGGTCCAATTACTCCGGCGTCAAGCTCGAAGAAACAGTTGATAGCAAAACCGGAAAGCTCCGACTAGATTCATGGGTCAGTTCCCGGATCGACGGAGTTAGTAGAGCTCGTGTTCAGTCTAGCATCCGCTCTGGTCTTGTTTCCGTCAATGGACGCGTCACTGATAAGGTCCCACTGCTTTACACTCAAAATTATATATGTAGTAAAAAAGAATTTGAAATAATAATCCATCTTCCAATAATATTTGTTTTACTGGTTTTAAGCTTGATACGGAGTTTAAGAGGTAAGAGACTTTCAAATGTTGTAGAATGTACCAAAATATCATTCAAGTTCGTGTCAACATGTCACGTGGAAAATTGAAATTAAGTCGTTGTAAGAAAAGCATTTCAACTCGATATTTGAAGTCATTTCAATGGCTTATAATTCTGGATTTTTCTCAGTTTTGTTGGTAAAGATTTGTTTTTTTACTTTGCAGGTTTCACATATGGTAAAAGGTGGAGATAAGGTTGATTGTACAATAGCTGATTTGAAGCCTTTAAGAGC</genome_strand>
        <mrna_strand>GAGAATAACGCTAATCCTTTCCATCCTCACGGGACATTGGCGATGGTAGCACTCAATACTACGTCGTTCTCTTTGCTTCCACAAAACCCAAAACCAATTTCTCTTTCTAGGGTTTCAAGCTTCATTTGCAGAGCATTTACCAAATTCCCCGGAGACTCAGATTCCGACGACTCACCGGATGAAATTCCCGGCCGGAGGTCCAATTACTCCGGCGTCAAGCTCGAAGAAACAGTTGATAGCAAAACCGGAAAGCTCCGACTAGATTCATGGGTCAGTTCCCGGATCGACGGAGTTAGTAGAGCTCGTGTTCAGTCTAGCATCCGCTCTGGTCTTGTTTCCGTCAATGGACGCGTCACTGATAAG...................................................................................................................................................................................................................................................................................................................GTTTCACATATGGTACAAGGTGGCGATAAGGTTGATTGTACAATAGCTGATTTGAAGCCTTTAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379664" ref_strand="+" ref_description="SGN-E379664 [TUS-3-D8](-)">
      <seq>tacctcttaaactccgtatcaagcttaaaaccagtaaaacaaatattattggaagatggattattatttcaaattcttttttactacatatataattttgagtgtaaagcagtgggaccttatcagtgacgcgtccattgacggaaacaagaccagagcggatgctagactgaacacgagctttactaactccgtcgatccgggaactgacccatgaatctagtcggagctttccggttttgctatcaactgtttcttcgagcttgacgccggagtaattggacctccggccgggaatttcatccggtgagtcgtcggaatctgagtctccggggaatttggtaaatgctctgcaaatgaagcttgaaaccctagaaagagaaattggttttgggttttgtggaagcaaagagaacgacgtagtattgagtgctaccatcgccaatgtcccgtgaggatggaaaggattagcgttattctcagaacaggtgaaaaagaagatatgaaacaaagcggtgtcccctagatagaggtttttttttttctttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="50378" stop="51527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50678" g_stop="51227" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E379664" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50678" e_stop="51227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCTTAAACTCCGTATCAAGCTTAAAACCAGTAAAACAAATATTATTGGAAGATGGATTATTATTTCAAATTCTTTTTTACTACATATATAATTTTGAGTGTAAAGCAGTGGGACCTTATCAGTGACGCGTCCATTGACGGAAACAAGACCAGAGCGGATGCTAGACTGAACACGAGCTCTACTAACTCCGTCGATCCGGGAACTGACCCATGAATCTAGTCGGAGCTTTCCGGTTTTGCTATCAACTGTTTCTTCGAGCTTGACGCCGGAGTAATTGGACCTCCGGCCGGGAATTTCATCCGGTGAGTCGTCGGAATCTGAGTCTCCGGGGAATTTGGTAAATGCTCTGCAAATGAAGCTTGAAACCCTAGAAAGAGAAATTGGTTTTGGGTTTTGTGGAAGCAAAGAGAACGACGTAGTATTGAGTGCTACCATCGCCAATGTCCCGTGAGGATGGAAAGGATTAGCGTTATTCTCAGAACAGGTGAAAAAGAAGATATGAAACAAAGCGGTGTCGTTTAGATAGAGGTTTTTTTTTTTCTTTTA</genome_strand>
        <mrna_strand>TACCTCTTAAACTCCGTATCAAGCTTAAAACCAGTAAAACAAATATTATTGGAAGATGGATTATTATTTCAAATTCTTTTTTACTACATATATAATTTTGAGTGTAAAGCAGTGGGACCTTATCAGTGACGCGTCCATTGACGGAAACAAGACCAGAGCGGATGCTAGACTGAACACGAGCTTTACTAACTCCGTCGATCCGGGAACTGACCCATGAATCTAGTCGGAGCTTTCCGGTTTTGCTATCAACTGTTTCTTCGAGCTTGACGCCGGAGTAATTGGACCTCCGGCCGGGAATTTCATCCGGTGAGTCGTCGGAATCTGAGTCTCCGGGGAATTTGGTAAATGCTCTGCAAATGAAGCTTGAAACCCTAGAAAGAGAAATTGGTTTTGGGTTTTGTGGAAGCAAAGAGAACGACGTAGTATTGAGTGCTACCATCGCCAATGTCCCGTGAGGATGGAAAGGATTAGCGTTATTCTCAGAACAGGTGAAAAAGAAGATATGAAACAAAGCGGTGTCCCCTAGATAGAGGTTTTTTTTTTTCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687998" ref_strand="+" ref_description="SGN-E687998 [T3_tus_85_A10]">
      <seq>ccggtttctgttttactaaagaatgttgttgtccacattatagagatgtaccaatttcatcatcccctgaatataatccaattccagtatcatctcaaaaatatccacaaaattcgataccagaaccaacaccagcaccagcaccagcatcgacttttatgccaaatcaaattggtccaatattaggaaaaccatatgtagacataaaaacactatatgatcttgataaagaattgggaagaggtcaatttgggataacctatctctgtagtgataaatcaagtggattgaaatacgcgtgtaaatcgatttcaaggaggaaattggtaacacaaaaggatattgaagatgttagaagggaagttacaatacttcaatatttaagtggacaaccaaatattgttgaatttaaaggtgcttatgaggataaaaacaatctacatttggttatggagttgtgtagtggtggtgaactttttgataggattacagcaaaagggaattattcagagaaagaagctgcaagaattggaagacaaatagtgaatgtggttcatgtttgtcattttatgggagttatgcatagagatcttaaaccggaaaatttcttgatggttagtaaagatgatgattctccattgaaggctactgattttgggctctctgttttcattgaagaaggaaaaatttacaaggatattgttggaagtgcatattatgttgcccctgaggtgttgaagcgcaagtatgggaaggagatagatgtgtggagtgctggaagtattttgaaatttttatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="56563" stop="53130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56265" g_stop="55585" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55584" i_stop="53549" i_length="2036">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53548" g_stop="53430" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="800" r_length="119" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E687998" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56265" e_stop="55585"/>
          <exon e_start="53548" e_stop="53430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTCTCTGTTTTACTAAAGAATGTTGTTGTCCACATTATAGAGATGTACCAATTTCATCATCCCCTGAATATAATCCAATTCCAGTATCATCTCAAAAATATCCACAAAATTCGATACCAGAACCAACACCAGCACCAGCACCAGCATCGACTTTTATGCCAAATCAAATTGGTCCAATATTAGGAAAACCATATGTAGACATAAAAACACTATATGATCTTGATAAAGAATTGGGAAGAGGTCAATTTGGGATAACCTATCTCTGTAGTGATAAATCAAGTGGATTGAAATACGCGTGTAAATCGATTTCAAGGAGGAAATTGGTAACACAAAAGGATATTGAAGATGTTAGAAGGGAAGTTACAATACTTCAATATTTAAGTGGACAACCAAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAAACAATCTACATTTGGTTATGGAGTTGTGTAGTGGTGGTGAACTTTTTGATAGGATTACAGCAAAAGGGAATTATTCAGAGAAAGAAGCTGCAAGAATTGGAAGACAAATAGTGAATGTGGTTCATGTTTGTCATTTTATGGGAGTTATGCATAGAGATCTTAAACCGGAAAATTTCTTGATGGTTAGTAAAGATGATGATTCTCCATTGAAGGCTACTGATTTTGGGCTCTCTGTTTTCATTGAAGAAGGTTAGTTTGTTGCAATTTTTTCTATATTAGTCTTTGACGTAACTAGTAAAGTTGTTGTAACGTGATTGACTCAGTGTGTTAGCTGTGAAAATAACTTCCGGTAGAAACATAGGGTAAACCCGCATACAATAGATACTAGTGCTCTAATCCCGTGCATAACAGAAGCTTAGTGCACTAAATTGCTCTTTGCCTTTTTTTATCATCAATATTTTCACTCAAGTTATTTCCTTCTACTTCCTTTTTCATTTTGACCTTGATTTTAAATTAGGTTCATACACATGAGGTAAAATATTTCCTAACAAAGGTGATTAGGTTCGTATCCTTGAGCCTCCTCTATATATCACAATTCTTGTTAGGTTTATGTATTATTTTTAATTCGTTCACTTCCTACTTTAATCATGTGATATTATTTATTTTTGTCGAGCCTGATTCTCTATGACATGGATGTCTTTGATTGGATGTTATGTGATAACTACTTTGAACATTAAGCTTGATTATAAGGCTCGATATGAGGGTTGATTTTTCAGATGATTACTTAACTTAGTTGTTATTATTTTAGAAAGTTATTTTTTTTTATTTCAGCTTTATTTTTTTCCGATAAAATAATGGCTTTCTAAGATAATAAATACTATTAATTAAAAAATCAACTCTTGAATAGTCTTTTAAATTTTCAGAATAATTGATGATAATGTTAATTAGAGCAATAGTGAGTCTAGTGACCATATAAGTTAAGTTTGATTACTTTGTTGAATGAGTCATGATTAGTCACTCAAATTCTTTAATCTTTATTAAATTATTGTCCTCTGGTCTTTTTTTAATTTGTTTTTTAAGGTTTTAGCACAACACACTCATTAAAAAGCCTATTTTAAAACCCTAGGCTTATGACCTATATGCTACTCTAAAGGTTGATTAAGACTTATTAAACATGTTATAAAAAATGTAAAACGAACACATGCCTTTATTTTATTTCATCAAAATAAGTTTATATCAGAAAAGAAGACTTATGACTTACTGCTCATTTACGCGGTTTAAAGTTTTACAAAAATCATGAAACATGAATTGTTGCAATTGAGAAAAATAAAATAAAAGTGTCAATTTGATGGGACAGTGTAATAGACTTTGGTCCTGTGTTTACAAGACTTTATATATGTGGATGGTTGACCTAGTCAATTGAAAGTAACAGGTCAATGCATATTTTCTTCATGTTCCCGTGTAAAAACTGTAAACACAATGAATATAGTCATGATGATTAGAGCACAGTCTGTCGTAGTTTGATTGAACACGAAATTTTTTAAAAATTGATAGTAAAACTTACTTAGTCCTATCATTTTGGTATAATACGTAAATATATGATCTTTTACTTGATTTCAAGCTCCCATCTAACAATTATGACTTTTAATTTTAAATGTGTACAAATAGACACTTAAACGTGTATACACATTTGTCCTACACAATAAATTTGTGTTCTACGTGACCTCCTACATGTTTTATAAGACACGTGTGTTTCTTTGTTCAATTTTATACAAGTTTAAAAATCTATTTGTACAAATCTAAAATTGAAAAACATAGGTATCAACTGAAGTCAAATTAAACAATATATTTTTATGTATTATGATGCTTTTTATTTAGTTTTTCTTGGTTGTAAAAGTAGAACTTTATATCAAGTGGTTTAAAAAAATAATATTGGGTGGGACATAAGTCATAACTTTGGTACGTATTGTTCACAAAGTTGTCATATACACAATTTATGACCGATTTGTTCACTTTTGTACAAAAGGGAATTAACAAAACTTGCTATGTCTTGCTCAATCTTTCATATGCTTTGAGGTTTTGCCGGACTGTAATATTCATTCTACCTATATTGTTAAATTATTTATAAGTTTTATTGAACTGGCAAAATGTAGCAATATATAATGCACATGTTTATTAAGTTGGATCGAATTCAACAGACATATAAAAATGTTAATGATTTTGATTATCTTCGGATATTAAACTTGCAATAAGCATCACATTTTCTCGAATTTATTATTTTGTAGGAAAAATTTACAAGGATATTGTTGGAAGTGCATATTATGTTGCCCCTGAGGTGTTGAAGCGCAAGTATGGGAAGGAGATAGATGTGTGGAGTGCTGGAGTTATTTTGTACATTTTATTA</genome_strand>
        <mrna_strand>CCGGTTTCTGTTTTACTAAAGAATGTTGTTGTCCACATTATAGAGATGTACCAATTTCATCATCCCCTGAATATAATCCAATTCCAGTATCATCTCAAAAATATCCACAAAATTCGATACCAGAACCAACACCAGCACCAGCACCAGCATCGACTTTTATGCCAAATCAAATTGGTCCAATATTAGGAAAACCATATGTAGACATAAAAACACTATATGATCTTGATAAAGAATTGGGAAGAGGTCAATTTGGGATAACCTATCTCTGTAGTGATAAATCAAGTGGATTGAAATACGCGTGTAAATCGATTTCAAGGAGGAAATTGGTAACACAAAAGGATATTGAAGATGTTAGAAGGGAAGTTACAATACTTCAATATTTAAGTGGACAACCAAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAAACAATCTACATTTGGTTATGGAGTTGTGTAGTGGTGGTGAACTTTTTGATAGGATTACAGCAAAAGGGAATTATTCAGAGAAAGAAGCTGCAAGAATTGGAAGACAAATAGTGAATGTGGTTCATGTTTGTCATTTTATGGGAGTTATGCATAGAGATCTTAAACCGGAAAATTTCTTGATGGTTAGTAAAGATGATGATTCTCCATTGAAGGCTACTGATTTTGGGCTCTCTGTTTTCATTGAAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATTTACAAGGATATTGTTGGAAGTGCATATTATGTTGCCCCTGAGGTGTTGAAGCGCAAGTATGGGAAGGAGATAGATGTGTGGAGTGCTGGAAGTATTTTGAAATTTTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334507" ref_strand="+" ref_description="SGN-E334507 [cTOD-23-J13]">
      <seq>tctgttttactaaagaatgttgttgtccacattatagagatgtaccaatttcatcatcccctgaatataatccaattccagtatcatctcaaaaatatccacaaaattcgataccagaaccaacaccagcaccagcaccagcatcgacttttatgccaaatcaaattggtccaatattaggaaaaccatatgtagacataaaaacactatatgatcttgataaagaattgggaagaggtcaatttgggataacctatctctgtagtgataaatcaagtggattgaaatacgcgtgtaaatcgatttcaaggaggaaattggtaacacaaaaggatattgaagatgttagaagggaagttacaatacttcaatatttaagtggacaaccaaatattgttgaatttaaaggtgcttatgaggataaaaacaatctacatttggttatggagttgtgtagtggtggtgaactttttgataggattacagcaaaagggaattattcagagaaagaagctgcaagaattggaagacaaatagtgaatgtggttcatgtttgtcattttatgggagttatgcatagagatcttaaaccggaaaatttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="56559" stop="55355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56259" g_stop="55655" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E334507" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56259" e_stop="55655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTTTACTAAAGAATGTTGTTGTCCACATTATAGAGATGTACCAATTTCATCATCCCCTGAATATAATCCAATTCCAGTATCATCTCAAAAATATCCACAAAATTCGATACCAGAACCAACACCAGCACCAGCACCAGCATCGACTTTTATGCCAAATCAAATTGGTCCAATATTAGGAAAACCATATGTAGACATAAAAACACTATATGATCTTGATAAAGAATTGGGAAGAGGTCAATTTGGGATAACCTATCTCTGTAGTGATAAATCAAGTGGATTGAAATACGCGTGTAAATCGATTTCAAGGAGGAAATTGGTAACACAAAAGGATATTGAAGATGTTAGAAGGGAAGTTACAATACTTCAATATTTAAGTGGACAACCAAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAAACAATCTACATTTGGTTATGGAGTTGTGTAGTGGTGGTGAACTTTTTGATAGGATTACAGCAAAAGGGAATTATTCAGAGAAAGAAGCTGCAAGAATTGGAAGACAAATAGTGAATGTGGTTCATGTTTGTCATTTTATGGGAGTTATGCATAGAGATCTTAAACCGGAAAATTTCTTG</genome_strand>
        <mrna_strand>TCTGTTTTACTAAAGAATGTTGTTGTCCACATTATAGAGATGTACCAATTTCATCATCCCCTGAATATAATCCAATTCCAGTATCATCTCAAAAATATCCACAAAATTCGATACCAGAACCAACACCAGCACCAGCACCAGCATCGACTTTTATGCCAAATCAAATTGGTCCAATATTAGGAAAACCATATGTAGACATAAAAACACTATATGATCTTGATAAAGAATTGGGAAGAGGTCAATTTGGGATAACCTATCTCTGTAGTGATAAATCAAGTGGATTGAAATACGCGTGTAAATCGATTTCAAGGAGGAAATTGGTAACACAAAAGGATATTGAAGATGTTAGAAGGGAAGTTACAATACTTCAATATTTAAGTGGACAACCAAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAAACAATCTACATTTGGTTATGGAGTTGTGTAGTGGTGGTGAACTTTTTGATAGGATTACAGCAAAAGGGAATTATTCAGAGAAAGAAGCTGCAAGAATTGGAAGACAAATAGTGAATGTGGTTCATGTTTGTCATTTTATGGGAGTTATGCATAGAGATCTTAAACCGGAAAATTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325741" ref_strand="+" ref_description="SGN-E325741 [cTOC-15-B12]">
      <seq>aaaaatatccacaaaattcgataccagaaccaacaccagcaccagcaccagcatcgacttttatgccaaatcaaattggtccaatattaggaaaaccatatgtagacataaaaacactatatgatcttgataaagaattgggaagaggtcaatttgggataacctatctctgtagtgataaatcaagtggattgaaatacgcgtgtaaatcgatttcaaggaggaaattggtaacacaaaaggatattgaagatgttagaagggaagttacaatacttcaatatttaagtggacaaccaaatattgttgaatttaaaggtgcttatgaggataaaaacaatctacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="56469" stop="55521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56169" g_stop="55821" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E325741" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56169" e_stop="55821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATCCACAAAATTCGATACCAGAACCAACACCAGCACCAGCACCAGCATCGACTTTTATGCCAAATCAAATTGGTCCAATATTAGGAAAACCATATGTAGACATAAAAACACTATATGATCTTGATAAAGAATTGGGAAGAGGTCAATTTGGGATAACCTATCTCTGTAGTGATAAATCAAGTGGATTGAAATACGCGTGTAAATCGATTTCAAGGAGGAAATTGGTAACACAAAAGGATATTGAAGATGTTAGAAGGGAAGTTACAATACTTCAATATTTAAGTGGACAACCAAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAAACAATCTACATTT</genome_strand>
        <mrna_strand>AAAAATATCCACAAAATTCGATACCAGAACCAACACCAGCACCAGCACCAGCATCGACTTTTATGCCAAATCAAATTGGTCCAATATTAGGAAAACCATATGTAGACATAAAAACACTATATGATCTTGATAAAGAATTGGGAAGAGGTCAATTTGGGATAACCTATCTCTGTAGTGATAAATCAAGTGGATTGAAATACGCGTGTAAATCGATTTCAAGGAGGAAATTGGTAACACAAAAGGATATTGAAGATGTTAGAAGGGAAGTTACAATACTTCAATATTTAAGTGGACAACCAAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAAACAATCTACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324260" ref_strand="+" ref_description="SGN-E324260 [cTOC-4-G22]">
      <seq>aaaaaaataaaaaaaatctcctttttctcaaaaaaaataaaaataaaaataaaatcatcaatgggtctctgttttactaaagaatgttgttgtccacattatagagatgtaccaatttcatcatcccctgaatataatccaattccagtatcatctcaaaaatatccacaaaattcgataccagaaccaacaccagcaccagcaccagcatcgacttttatgccaaatcaaattggtccaatattaggaaaaccatatgtagacataaaaacactatatgatcttgataaagaattgggaagaggtcaatttgggataacctatctctgtagtgataaatcaagtggattgaaatacgcgtgtaaatcgatttcaaggaggaaattggtaacacaaaaggatattgaagatgttagaagggaagttacaatacttcaatatttaagtggacaaccaaatattgttgaatttaaaggtgcttatgaggataaaaacaatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="56625" stop="55525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56326" g_stop="55825" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E324260" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56326" e_stop="55825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAATAAAAAAATCTCCTTTTTCTCAAAAAAAATAAAAATAAAAATAAAATCATCAATGGGTCTCTGTTTTACTAAAGAATGTTGTTGTCCACATTATAGAGATGTACCAATTTCATCATCCCCTGAATATAATCCAATTCCAGTATCATCTCAAAAATATCCACAAAATTCGATACCAGAACCAACACCAGCACCAGCACCAGCATCGACTTTTATGCCAAATCAAATTGGTCCAATATTAGGAAAACCATATGTAGACATAAAAACACTATATGATCTTGATAAAGAATTGGGAAGAGGTCAATTTGGGATAACCTATCTCTGTAGTGATAAATCAAGTGGATTGAAATACGCGTGTAAATCGATTTCAAGGAGGAAATTGGTAACACAAAAGGATATTGAAGATGTTAGAAGGGAAGTTACAATACTTCAATATTTAAGTGGACAACCAAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAAACAATCTAC</genome_strand>
        <mrna_strand>AAAAAAATAAAAAAAATCTCCTTTTTCTCAAAAAAAATAAAAATAAAAATAAAATCATCAATGGGTCTCTGTTTTACTAAAGAATGTTGTTGTCCACATTATAGAGATGTACCAATTTCATCATCCCCTGAATATAATCCAATTCCAGTATCATCTCAAAAATATCCACAAAATTCGATACCAGAACCAACACCAGCACCAGCACCAGCATCGACTTTTATGCCAAATCAAATTGGTCCAATATTAGGAAAACCATATGTAGACATAAAAACACTATATGATCTTGATAAAGAATTGGGAAGAGGTCAATTTGGGATAACCTATCTCTGTAGTGATAAATCAAGTGGATTGAAATACGCGTGTAAATCGATTTCAAGGAGGAAATTGGTAACACAAAAGGATATTGAAGATGTTAGAAGGGAAGTTACAATACTTCAATATTTAAGTGGACAACCAAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAAACAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325573" ref_strand="+" ref_description="SGN-E325573 [cTOC-15-B11]">
      <seq>aaaaatatccacaaaattcgataccagaaccaacaccagcaccagcaccagcatcgacttttatgccaaatcaaattggtccaatattaggaaaaccatatgtagacataaaaacactatatgatcttgataaagaattgggaagaggtcaatttgggataacctatctctgtagtgataaatcaagtggattgaaatacgcgtgtaaatcgatttcaaggaggaaattggtaacaccaaaggatattgaagatgttagaagggaagttaccaatacttcaatatttaagtggaccaccaaatattgctgaatttaaaggtgcttatgaggataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="56469" stop="55533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56169" g_stop="55833" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E325573" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56169" e_stop="55833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATCCACAAAATTCGATACCAGAACCAACACCAGCACCAGCACCAGCATCGACTTTTATGCCAAATCAAATTGGTCCAATATTAGGAAAACCATATGTAGACATAAAAACACTATATGATCTTGATAAAGAATTGGGAAGAGGTCAATTTGGGATAACCTATCTCTGTAGTGATAAATCAAGTGGATTGAAATACGCGTGTAAATCGATTTCAAGGAGGAAATTGGTAACACAAAAGGATATTGAAGATGTTAGAAGGGAAGTTA-CAATACTTCAATATTTAAGTGGACAACCAAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAAA</genome_strand>
        <mrna_strand>AAAAATATCCACAAAATTCGATACCAGAACCAACACCAGCACCAGCACCAGCATCGACTTTTATGCCAAATCAAATTGGTCCAATATTAGGAAAACCATATGTAGACATAAAAACACTATATGATCTTGATAAAGAATTGGGAAGAGGTCAATTTGGGATAACCTATCTCTGTAGTGATAAATCAAGTGGATTGAAATACGCGTGTAAATCGATTTCAAGGAGGAAATTGGTAACACCAAAGGATATTGAAGATGTTAGAAGGGAAGTTACCAATACTTCAATATTTAAGTGGACCACCAAATATTGCTGAATTTAAAGGTGCTTATGAGGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402558" ref_strand="+" ref_description="SGN-E402558 [PPC-8-G1]">
      <seq>aatatccaaaagtgacacggcaaagccaaagcaaagcacctctaaaagctaaacagtctgttgtaaaaatcacaaaaatctccatcaaaacattctcgatatgaattaaaatactttacttaacaccctttaaatatccatcaaaatccacaaatctctctctcaaaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="56796" stop="56019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56496" g_stop="56319" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E402558" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56496" e_stop="56319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCCAAAAGTGACACGGCAAAGCTAAAGCAAAGCACCTCTAAAAGCTAAACAGTCTGTTGCAAAAATCATAAAAATCTCCATCAAAAACATTCTCAATATGAATTAAAATAC--T-C--AACACCCTTTAAATATCCATCAAAATCCACAAATCTCTCTCTCTCAAACCAAAAAAAAAAA</genome_strand>
        <mrna_strand>AATATCCAAAAGTGACACGGCAAAGCCAAAGCAAAGCACCTCTAAAAGCTAAACAGTCTGTTGTAAAAATCACAAAAATCTCCATC-AAAACATTCTCGATATGAATTAAAATACTTTACTTAACACCCTTTAAATATCCATCAAAATCCACAAA--TCTCTCTCTCAAACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432911" ref_strand="+" ref_description="SGN-E432911 [STM-57-B14]">
      <seq>atatccaaaagtgacacggcaaagccaaagcaaagcacctctaaaagctaaacagtctgttgtaaaaatcacaaaaatctccatcaaaacattctcgatatgaattaaaatactttacttaacaccctttaaatatccatcaaaatccacaaatctctctctcaaaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="56795" stop="56019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56495" g_stop="56319" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E432911" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56495" e_stop="56319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCAAAAGTGACACGGCAAAGCTAAAGCAAAGCACCTCTAAAAGCTAAACAGTCTGTTGCAAAAATCATAAAAATCTCCATCAAAAACATTCTCAATATGAATTAAAATAC--T-C--AACACCCTTTAAATATCCATCAAAATCCACAAATCTCTCTCTCTCAAACCAAAAAAAAAAA</genome_strand>
        <mrna_strand>ATATCCAAAAGTGACACGGCAAAGCCAAAGCAAAGCACCTCTAAAAGCTAAACAGTCTGTTGTAAAAATCACAAAAATCTCCATC-AAAACATTCTCGATATGAATTAAAATACTTTACTTAACACCCTTTAAATATCCATCAAAATCCACAAA--TCTCTCTCTCAAACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="60854" stop="59830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60554" g_stop="60130" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60554" e_stop="60130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTCTTTTAGCTGCTGAAAAACTCTCTCTGAAAAAT</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTCTTTTAGCTGCTGAAAAACTCTCTCTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379905" ref_strand="+" ref_description="SGN-E379905 [TUS-1-D13]">
      <seq>tttaatataattttctgaattccctaattagaattttttattgcattcgatctaaggattaagggtgtagtctattaatcaataatatacattatgtattatgattctcaagtgacaaaaaatagttagtaattcttttttatgtgtttaagctttattaaatagagttatctgttacgtatgataataataagtaacaagtatgctataaaattagtcaaaatattgttgggaaagacaagacactaacaaagaatgcctgacaggataacagcggaagaatacccnagtctatactttcccttttcgatttgaaccaagagaaaacaaacaaccacnagcaatatgatagtaaggcagcaagtaattctaccaaacaaatattacaagacaataataaaccaatcacacaagacatcaagatttacgtggaanacccttcgatgtgaagagtagnaaaccacgggaccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="61269" stop="60148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60969" g_stop="60448" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E379905" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60969" e_stop="60448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATATAATTTTCTGAATTCCCTAATTAGAATTTTTTATTGCATTCGATCTAAGGATTAAGGGTGTAGTCTATTAATCAATAATATACATTATGTATTATGATTCTCAAGTGACAAAAAATAGTTAGTAATTCTTTTTTATGTGTTTAAGCTTTAGTAAATAGAGTTATCTGTTACGTATGATAATAATAAGTAACAAGTATGCAATAAAATTAGTCAAAATATTGTTGGGAAAGACAAGACACTAACAAAGAATGCCTGACAGGATAACAGCGGAAGAATACCCAAGTCTATACTTTCCCTTTTCGATTTGAACCAAGAGAAAACAAACAACCACAAGCAATATGATAGTAAGGCAGCAAGTAATTCAACCAAACAAATATAACAAGACAATAATAAACCAATCACACAAGACATCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGC</genome_strand>
        <mrna_strand>TTTAATATAATTTTCTGAATTCCCTAATTAGAATTTTTTATTGCATTCGATCTAAGGATTAAGGGTGTAGTCTATTAATCAATAATATACATTATGTATTATGATTCTCAAGTGACAAAAAATAGTTAGTAATTCTTTTTTATGTGTTTAAGCTTTATTAAATAGAGTTATCTGTTACGTATGATAATAATAAGTAACAAGTATGCTATAAAATTAGTCAAAATATTGTTGGGAAAGACAAGACACTAACAAAGAATGCCTGACAGGATAACAGCGGAAGAATACCCNAGTCTATACTTTCCCTTTTCGATTTGAACCAAGAGAAAACAAACAACCACNAGCAATATGATAGTAAGGCAGCAAGTAATTCTACCAAACAAATATTACAAGACAATAATAAACCAATCACACAAGACATCAAGATTTACGTGGAANACCCTTCGATGTGAAGAGTAGNAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201144" ref_strand="+" ref_description="SGN-E201144 [cLEC-10-B21]">
      <seq>tttaatataattttctgaattccctaattagaattttttattgcattcgatctaaggattaagggtgtagtctattaatcaataatatacattatgtattatgattctcaagtgacaaaaaatagttagtaattcttttttatgtgtttaagctttattaaatagagttatctgttacgtatgataataataagtaacaagtatgcaataaaattagtcaaaatattgttgggaaagacaagacactaacaaagaatgcctgacaggataacagcggaagaatacccaagtctatactttcccttttcgatttgaaccaagagaaaacaaacaaccacaagcaatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="61269" stop="60320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60969" g_stop="60620" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E201144" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60969" e_stop="60620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATATAATTTTCTGAATTCCCTAATTAGAATTTTTTATTGCATTCGATCTAAGGATTAAGGGTGTAGTCTATTAATCAATAATATACATTATGTATTATGATTCTCAAGTGACAAAAAATAGTTAGTAATTCTTTTTTATGTGTTTAAGCTTTAGTAAATAGAGTTATCTGTTACGTATGATAATAATAAGTAACAAGTATGCAATAAAATTAGTCAAAATATTGTTGGGAAAGACAAGACACTAACAAAGAATGCCTGACAGGATAACAGCGGAAGAATACCCAAGTCTATACTTTCCCTTTTCGATTTGAACCAAGAGAAAACAAACAACCACAAGCAATATGAT</genome_strand>
        <mrna_strand>TTTAATATAATTTTCTGAATTCCCTAATTAGAATTTTTTATTGCATTCGATCTAAGGATTAAGGGTGTAGTCTATTAATCAATAATATACATTATGTATTATGATTCTCAAGTGACAAAAAATAGTTAGTAATTCTTTTTTATGTGTTTAAGCTTTATTAAATAGAGTTATCTGTTACGTATGATAATAATAAGTAACAAGTATGCAATAAAATTAGTCAAAATATTGTTGGGAAAGACAAGACACTAACAAAGAATGCCTGACAGGATAACAGCGGAAGAATACCCAAGTCTATACTTTCCCTTTTCGATTTGAACCAAGAGAAAACAAACAACCACAAGCAATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606362" ref_strand="+" ref_description="SGN-E606362 [22303]">
      <seq>gttcttacatgttatatgtagagataaataggtaaaaggataccataatgtataattaggtataaagcatgtcttactgacatgttattgtgaatttttaatgggcctttgtttatggaattcacaacttgtagttgttggtttgagaagtcatcatatatgagcctttggaaaaatcacaaatgtacataaaaatgtgtttattataactccaggatgagtcattatcattctttgtgctattataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="62127" stop="61276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61827" g_stop="61563" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E606362" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61827" e_stop="61563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCAGATATGAGCCTTAAG-AAAATCACAAATGTACATAAAAATGTTTTTATAAT-ACTCCAGGACGAGTCATTATCATTCTTTGTGCTATTATGATAAACATGTTATGAAGAAT</genome_strand>
        <mrna_strand>GTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATAATGTATAATTAGGTATAAAGCATGTCTTACTGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCATATATGAGCCTTTGGAAAAATCACAAATGTACATAAAAATGTGTTTATTATAACTCCAGGATGAGTCATTATCATTCTTTGTGCTATTATAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745959" ref_strand="+" ref_description="SGN-E745959 [GI|47105443]">
      <seq>gaaactaggcatagctatgtacgtttagggaagagagagaaaaaaaatgaaaaatcagaaatgcgtacaattataaaagcacctaattccaatggtgaaatatcacactaagcttttttgagaaaaaaaaatggaggaattggagaagaagaatattactagtatgaaggaagaagaagcagaagaagaaattgataatagttttgtacctgtttatcactcttttgcttctaaaagttatcattctcaccttgtttctgatgattatttgtcgattttagcatccaaagatggcgattttctcctttctcccaccggagctcaggtgaaagtttcggaacttgagggcaaagttgttggcctttacttttcagctaactggtattcaccatgtacggagtttacaaacctgttagtcaatgtgtatcagcagcttaaggaatgcagcaatatcaatctcggtttcgaaatcgtctttgtttcgtctgatgaagacttaaatgccttcaatacttataggtcatcaatgccttggcttgcaattcctttctctgatttggaaacaaggagagcccttacccaaaagtttgatgtcgaaggtatcccttgtttgatagttctgctacctaacgatgacaaattagacactgcagttattaaagacggagttgaactcgtgtatcgatatggagtccaagcttttccgtttaccaaagaaaggttggacgagttacgaaagaaggagaaggagaaacgtgacaaccagacattgagcagtttgctaacacacgatgccagagatgttctttcggggcatcctagtcctaaacaagtgtctgttgcttctttaaaggggaaaacagttggactttacttctcagctcaatggtgcaatcctgcgaaaaaatttactccgaggttaatttcagtctacaaaaagattaagcagcagctagagggaaaggatgatgaggatttcgagatagtgttcgtatcaagtgaccataaccaagttgatttcacaacgtattttgagaccatgccctggctagcaaccccatttgatgatccaacaatcaaagctctagctaagtattttgatatccgagggattccgagcctagtgatattgggccctgatggtaaaacagtgaccaaacaaggtaggagcctcatcaacttatacaaagagaacgcttacccattcacaaagactagaatagatatattagagaagcaaatggatgaaatagcaaaaggccttcctaagacagagaaccattcgggccatcgacacgagctcactttagtaccagagggccatgggggtggagcttttatctgttgtgattgtgatgaacagggctatggatgggcttaccaatgccttgagtgtggctatgaggtacatcccaagtgtgtgaagcccgtgcgccgcgacccagaaaactaatatattgggctgatcttaggttcttacatgttatatgtagagataaataggtaaaaggataccatgatgtataattgggtataaatcatgtcttaatgacatgttattgtgaatttttaatgggcctttgtttatggaattcacaacttgtagttgttggtttgagaagtcatcagatatgagccttaagaaaatcacaaatgtacataaaaatgtttttataatactccaggacgagtcattatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="64674" stop="61300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64375" g_stop="64051" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64050" i_stop="63177" i_length="874">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63176" g_stop="62670" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="832" r_length="507" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62669" i_stop="62537" i_length="133">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62536" g_stop="62206" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="1163" r_length="331" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62205" i_stop="62137" i_length="69">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62136" g_stop="61601" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1164" r_stop="1699" r_length="536" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1700" polyA_stop="1715"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E745959" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1699</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64375" e_stop="64051"/>
          <exon e_start="63176" e_stop="62670"/>
          <exon e_start="62536" e_stop="62206"/>
          <exon e_start="62136" e_stop="61601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTAGGCATAGCTATGTACGTTTAGGGAAGAGAGAGAAAAAAAATGAAAAATCAGAAATGCGTACAATTATAAAAGCACCTAATTCCAATGGTGAAATATCACACTAAGCTTTATTGAGAAAAAAAAATGGAGGAATTGGAGAAGAAGAATATTACTAGTATGAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAGGTATGATTTGCGTTTTCGTTGTTGAAATAAACTATTAACTGAATACAGAGAAAACTGTAGCTTATATCCTATAACAGTAGCATTACGGCGAAAAATTAACTTACAGAGTTTGCGTATAATGTTGTTGTTGGTGATGAGATGTATACGATTCCTTTTCATTAAACTATAAGTCTCGGATTTGAGTTTCGAGTATGAGAAAGAATGTGATAGAGAGTGTTTAACGGGTGCCGATTCAAATTAATGGAGATCTATGGAAACTGAAGGGCTCAGATTCGGCTCTGATCCCTACTAGGAAAATAGAATTAATTATCATTTATCAATGGGAATTCAAGAGTATATGAAATGAAGTTTACATATTTGAAAATTACAAGTAGAAGCCTAATAGATACATTGATTTGAGGAAGTGAATATGTATTCTTTAAGTTATAATCTTTTTGTTCTAAGTAGCACTTGAGAAATCACGAACGTAGATCTCGAATTACGATCTACTTTAGATGATTTGAATAAGGACATGTTGGTATCTCAAAGTAACAATAGTAAATGGACTAATGTAAATTTGATATCTTTGGTATGACCATTATCTAATTGGAGAGTTACAACTCGAAACATTGTGAAGCTGCAATTGGTATAGTTATGGTCCGCGATTTGTTAGTATCTTGAATTTTGCACTATAGGCGTATATGATAGCATCCCCTTTTATGTATTTATCCGTTCTCTATTGATGTAAAAGGTCCATTTCTCTCCGGACATGATAGTCTGCGTGTTTGTGTGTGTGTAATCGTTAAACTCAATGAGATGATCTTATCTTTTGCTCCATTGGAATAATCTTACATGTACTTTAATGATGTAGTGGTTGTGTTGGTGAATGACACAGGTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAAGTGAGTCAGTCTTTCATACATGAATAGATTGTGAAACGTAGTGCCTCTTGATTACAACTTGTTACATGTTAAATGCGTACTCGAGATATTCACCACTTCTATTGTGCATACTTTTATACATTTCACTTTGTAGGTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAATCCCATTTGATGATCCAACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAAACAGTGACCAAACAAGGTATGTAGTATTATCACGTGTTACCATCTCATTTGAAAGCTTTCATTACTTAATGTTATGTCTCGACAGGTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCAGATATGAGCCTTAAGAAAATCACAAATGTACATAAAAATGTTTTTATAATACTCCAGGACGAGTCATTATC</genome_strand>
        <mrna_strand>GAAACTAGGCATAGCTATGTACGTTTAGGGAAGAGAGAGAAAAAAAATGAAAAATCAGAAATGCGTACAATTATAAAAGCACCTAATTCCAATGGTGAAATATCACACTAAGCTTTTTTGAGAAAAAAAAATGGAGGAATTGGAGAAGAAGAATATTACTAGTATGAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGATTTTCTCCTTTCTCCCACCGGAGCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGGAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTGCTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAA.....................................................................................................................................GTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAACCCCATTTGATGATCCAACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAAACAGTGACCAAACAAG.....................................................................GTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCGCGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCAGATATGAGCCTTAAGAAAATCACAAATGTACATAAAAATGTTTTTATAATACTCCAGGACGAGTCATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713934" ref_strand="+" ref_description="SGN-E713934 [FB10AC07]">
      <seq>cagtttgctaacacacgatgccagagatgttctttcggggcatcctagtcctaaacaagtgtctgttgcttctttaaaggggaaaacagttggactttacttctcagctcaatggtgcaatcctgcgaaaaaatttactccgaggttaatttcagtctacaaaaagattaagcagcagctagagggaaaggatgatgaggatttcgagatagtgttcgtatcaagtgaccataaccaagttgatttcacaacgtattttgagaccatgccctggctagcaatcccatttgatgatccaacaatcaaagctctagctaagtattttgatatccgagggattccgagcctagtgatattgggccctgatggtaaaacagtgaccaaacaaggtaggagcctcatcaacttatacaaagagaacgcttacccattcacaaagactagaatagatatattagagaagcaaatggatgaaatagcaaaaggccttcctaagacagagaaccattcgggccatcgacacgagctcactttagtaccagagggccatgggggtggagcttttatctgttgtgattgtgatgaacagggctatggatgggcttaccaatgccttgagtgtggctatgaggtacatcccaagtgtgtgaagcccgtgcgccacgacccagaaaactaatatattgggctgatcttaggttcttacatgttatatgtagagataaataggtaaaaggataccatgatgtataattgggtataaatcatgtcttaatgacatgttattgtgaatttttaatgggcctttgtttatggaattcacaacttgtagttgttggtttgagaagtcatcagatatgagccttaagaaaatcacaaatgtacataaaaatgtttttataatactccaggacgagtcattatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="63027" stop="61300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62727" g_stop="62670" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62669" i_stop="62537" i_length="133">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62536" g_stop="62206" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="389" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62205" i_stop="62137" i_length="69">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62136" g_stop="61601" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="925" r_length="536" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="926" polyA_stop="935"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E713934" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62727" e_stop="62670"/>
          <exon e_start="62536" e_stop="62206"/>
          <exon e_start="62136" e_stop="61601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAAGTGAGTCAGTCTTTCATACATGAATAGATTGTGAAACGTAGTGCCTCTTGATTACAACTTGTTACATGTTAAATGCGTACTCGAGATATTCACCACTTCTATTGTGCATACTTTTATACATTTCACTTTGTAGGTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAATCCCATTTGATGATCCAACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAAACAGTGACCAAACAAGGTATGTAGTATTATCACGTGTTACCATCTCATTTGAAAGCTTTCATTACTTAATGTTATGTCTCGACAGGTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCAGATATGAGCCTTAAGAAAATCACAAATGTACATAAAAATGTTTTTATAATACTCCAGGACGAGTCATTATC</genome_strand>
        <mrna_strand>CAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAA.....................................................................................................................................GTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAATCCCATTTGATGATCCAACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAAACAGTGACCAAACAAG.....................................................................GTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCAGATATGAGCCTTAAGAAAATCACAAATGTACATAAAAATGTTTTTATAATACTCCAGGACGAGTCATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713053" ref_strand="+" ref_description="SGN-E713053 [FB06CD05]">
      <seq>aaaacagtgaccaaacaaggtaggagcctcatcaacttatacaaagagaacgcttacccattcacaaagactagaatagatatattagagaagcaaatggatgaaatagcaaaaggccttcctaagacagagaaccattcgggccatcgacacgagctcactttagtaccagagggccatgggggtggagcttttatctgttgtgattgtgatgaacagggctatggatgggcttaccaatgccttgagtgtggctatgaggtacatcccaagtgtgtgaagcccgtgcgccacgacccagaaaactaatatattgggctgatcttaggttcttacatgttatatgtagagataaataggtaaaaggataccatgatgtataattgggtataaatcatgtcttaatgacatgttattgtgaatttttaatgggcctttgtttatggaattcacaacttgtagttgttggtttgagaagtcatcagatatgagccttaagaaaatcacaaatgtacataaaaatgtttttataatactccaggacgagtcattatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="62440" stop="61300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62224" g_stop="62206" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62205" i_stop="62137" i_length="69">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62136" g_stop="61601" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="555" r_length="536" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="566"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E713053" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62224" e_stop="62206"/>
          <exon e_start="62136" e_stop="61601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGTGACCAAACAAGGTATGTAGTATTATCACGTGTTACCATCTCATTTGAAAGCTTTCATTACTTAATGTTATGTCTCGACAGGTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCAGATATGAGCCTTAAGAAAATCACAAATGTACATAAAAATGTTTTTATAATACTCCAGGACGAGTCATTATC</genome_strand>
        <mrna_strand>AAAACAGTGACCAAACAAG.....................................................................GTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCAGATATGAGCCTTAAGAAAATCACAAATGTACATAAAAATGTTTTTATAATACTCCAGGACGAGTCATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423600" ref_strand="-" ref_description="SGN-E423600 [STM-42-C18]">
      <seq>agttggactttacttctcagctcaatgtgcatttcctgcgaaaaaatttactccgaggttaatttcagtctacaaaaagattaagcagcagctagagggaaaggaggatgaggatttcgagatagtgttcgtatcaagtgaccataaccaagtggatttcacaacgtatttcgagaccatgccctggctagcaattccatttgatgatccaacaatcagtgctctagctaagtattttgatatccgagggattccgagcctagtgatactgggccctgatggtaaaacagtgaccaaacaaggtaggagcctcatcaacttatataaagagaatgcttacccattcacaaagactagagtaggcatattagagaagcaaatggatgaaatagcaaaaggccttcctaagacagagaaccattcgggccatcgacacgagctcactttagtaccagaaggccatggaggtggagcttttatctgttgtgattgtgatgaacagggctatggatgggcttatcaatgccttgagtgtggctatgaggtacaccccaagtgtgtgaatcccgtgcgccgcgacccagacaactaatatattgggctgatcttaggttcttacatgttatatgtagagataaataggtaaaaggataccataatgtataattaggtataaagcatgtcttactgacatgttattgtgaatttttaatgggcctttgtttatggaattcacaacttgtagttgttggtttgagaagtcatcacatatgagcctttggaaaaatcacaaatgacaataaaaatgtgtttattcaaaaaagtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="62807" stop="61325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62507" g_stop="62206" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62205" i_stop="62137" i_length="69">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62136" g_stop="61627" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="813" r_length="511" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E423600" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423600" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62507" e_stop="62206"/>
          <exon e_start="62136" e_stop="61627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGGACTTTACTTCTCAGCTCAATGGTGCA-ATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAATCCCATTTGATGATCCAACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAAACAGTGACCAAACAAGGTATGTAGTATTATCACGTGTTACCATCTCATTTGAAAGCTTTCATTACTTAATGTTATGTCTCGACAGGTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCAGATATGAGCCTTAAG-AAAATCACAAATGTACATAAAAATGTTTTT</genome_strand>
        <mrna_strand>AGTTGGACTTTACTTCTCAGCTCAAT-GTGCATTTCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGAGGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTGGATTTCACAACGTATTTCGAGACCATGCCCTGGCTAGCAATTCCATTTGATGATCCAACAATCAGTGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATACTGGGCCCTGATGGTAAAACAGTGACCAAACAAG.....................................................................GTAGGAGCCTCATCAACTTATATAAAGAGAATGCTTACCCATTCACAAAGACTAGAGTAGGCATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAAGGCCATGGAGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTATCAATGCCTTGAGTGTGGCTATGAGGTACACCCCAAGTGTGTGAATCCCGTGCGCCGCGACCCAGACAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATAATGTATAATTAGGTATAAAGCATGTCTTACTGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCACATATGAGCCTTTGGAAAAATCACAAATGACAATAAAAATGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352431" ref_strand="+" ref_description="SGN-E352431 [cTOS-9-H18]">
      <seq>taaaacagtgaccaaacaaggtaggagcctcatcaacttatacaaagagaacgcttacccattcacaaagactagaatagatatattagagaagcaaatggatgaaatagcaaaaggccttcctaagacagagaaccattcgggccatcgacacgagctcactttagtaccagagggccatgggggtggagcttttatctgttgtgattgtgatgaacagggctatggatgggcttaccaatgccttgagtgtggctatgaggtacatcccaagtgtgtgaagcccgtgcgccacgacccagaaaactaatatattgggctgatcttaggttcttacatgttatatgtagagataaataggtaaaaggataccatgatgtataattgggtataaatcatgtcttaatgacatgttattgtgaatttttaatgggcctttgtttatggaattcacaacttgtagttgttggtttgagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="62525" stop="61379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62225" g_stop="62206" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62205" i_stop="62137" i_length="69">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62136" g_stop="61670" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="487" r_length="467" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E352431" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62225" e_stop="62206"/>
          <exon e_start="62136" e_stop="61670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACAGTGACCAAACAAGGTATGTAGTATTATCACGTGTTACCATCTCATTTGAAAGCTTTCATTACTTAATGTTATGTCTCGACAGGTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCAGA</genome_strand>
        <mrna_strand>TAAAACAGTGACCAAACAAG.....................................................................GTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352793" ref_strand="+" ref_description="SGN-E352793 [cTOS-11-C15]">
      <seq>taaaacagtgaccaaacaaggtaggagcctcatcaacttatacaaagagaacgcttacccattcacaaagactagaatagatatattagagaagcaaatggatgaaatagcaaaaggccttcctaagacagagaaccattcgggccatcgacacgagctcactttagtaccagagggccatgggggtggagcttttatctgttgtgattgtgatgaacagggctatggatgggcttaccaatgccttgagtgtggctatgaggtacatcccaagtgtgtgaagcccgtgcgccacgacccagaaaactaatatattgggctgatcttaggttcttacatgttatatgtagagataaataggtaaaaggataccatgatgtataattgggtataaatcatgtcttaatgacatgttattgtgaatttttaatgggcctttgtttatggaattcacaacttgtagttgttggtttgagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="62525" stop="61379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62225" g_stop="62206" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62205" i_stop="62137" i_length="69">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62136" g_stop="61670" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="487" r_length="467" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E352793" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62225" e_stop="62206"/>
          <exon e_start="62136" e_stop="61670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACAGTGACCAAACAAGGTATGTAGTATTATCACGTGTTACCATCTCATTTGAAAGCTTTCATTACTTAATGTTATGTCTCGACAGGTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCAGA</genome_strand>
        <mrna_strand>TAAAACAGTGACCAAACAAG.....................................................................GTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355250" ref_strand="+" ref_description="SGN-E355250 [cTOS-18-B3]">
      <seq>taaaacagtgaccaaacaaggtaggagcctcatcaacttatacaaagagaacgcttacccattcacaaagactagaatagatatattagagaagcaaatggatgaaatagcaaaaggccttcctaagacagagaaccattcgggccatcgacacgagctcactttagtaccagagggccatgggggtggagcttttatctgttgtgattgtgatgaacagggctatggatgggcttaccaatgccttgagtgtggctatgaggtacatcccaagtgtgtgaagcccgtgcgccacgacccagaaaactaatatattgggctgatcttaggttcttacatgttatatgtagagataaataggtaaaaggataccatgatgtataattgggtataaatcatgtcttaatgacatgttattgtgaatttttaatgggcctttgtttatggaattcacaacttgtagttgttggtttgagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="62525" stop="61379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62225" g_stop="62206" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62205" i_stop="62137" i_length="69">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62136" g_stop="61670" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="487" r_length="467" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E355250" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62225" e_stop="62206"/>
          <exon e_start="62136" e_stop="61670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACAGTGACCAAACAAGGTATGTAGTATTATCACGTGTTACCATCTCATTTGAAAGCTTTCATTACTTAATGTTATGTCTCGACAGGTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCAGA</genome_strand>
        <mrna_strand>TAAAACAGTGACCAAACAAG.....................................................................GTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596940" ref_strand="-" ref_description="SGN-E596940 [40433]">
      <seq>aattccatgtgatgatccaacaatcaatgctctagctaaagtattttgataattccgaaggaattccggagccttagtgattactgggcccttgatggtaaaacagtgaccaaacaaggtaggagcctcatcaacttatataaagagaatgcttacccattcacaaagactagagtaggcatattagagaagcaaatggatgaaatagcaaaaggccttcctaagacagagaaccattcaggccatcgacacgagctcactttagtaccagaaggccatggaggtggagcttttatctgttgtgattgtgatgaacagggctatggatgggcttaccaatgccttgagtgtggctatgaggtacaccccaagtgtgtgaatcccatgcgccgcgacctagataactaatatattgggctgatcttaggttcttacatgttatatgtagagataaataggtaaaaggataccataatgtataattacgtataaagcatgtcttactgacatgttattgtgaatttttaatgggcctttgtttatggaattcacaacttgtagttgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="62615" stop="61389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62315" g_stop="62206" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.809"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62205" i_stop="62137" i_length="69">
            <donor d_prob="0.997" d_score="0.85"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62136" g_stop="61687" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="568" r_length="450" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E596940" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596940" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62315" e_stop="62206"/>
          <exon e_start="62136" e_stop="61687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCCATTTGATGATCCAACAATCAAAGCTCTAGCT-AAGTATTTTGAT-A-TCCG-AGGGATTCC-GAGCC-TAGTGAT-ATTGGGCCC-TGATGGTAAAACAGTGACCAAACAAGGTATGTAGTATTATCACGTGTTACCATCTCATTTGAAAGCTTTCATTACTTAATGTTATGTCTCGACAGGTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGG</genome_strand>
        <mrna_strand>AATTCCATGTGATGATCCAACAATCAATGCTCTAGCTAAAGTATTTTGATAATTCCGAAGGAATTCCGGAGCCTTAGTGATTACTGGGCCCTTGATGGTAAAACAGTGACCAAACAAG.....................................................................GTAGGAGCCTCATCAACTTATATAAAGAGAATGCTTACCCATTCACAAAGACTAGAGTAGGCATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCAGGCCATCGACACGAGCTCACTTTAGTACCAGAAGGCCATGGAGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACACCCCAAGTGTGTGAATCCCATGCGCCGCGACCTAGATAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATAATGTATAATTACGTATAAAGCATGTCTTACTGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585450" ref_strand="-" ref_description="SGN-E585450 [67910]">
      <seq>caattggtgcattcctgcgaaaaatttactccgaggttaatttcagtctacaaaagattaagcagcagctagagggaaaggaggatgaggatttcgagatagtgttcgtatcaagtgaccataaccaagtggatttcacaacgtatttcgagaccatgccctggctagcaattccatttgatgatccaacaatcaatgctctagctaagtattttgatatccgagggattccgagcctagtgatactgggccctgatggtaaaacagtgaccaaacaaggtaggagcctcatcaacttatataaagagaatgcttacccattcacaaagactagagtaggcatattagagaagcaaatggatgaaatagcaaaaggccttcctaagacagagaaccattcaggccatcgacacgagctcactttagtaccagaaggccatggaggtggagcttttatctgttgtgattgtgatgaacagggctatggatgggcttaccaatgccttgagtgtggctatgaggtacaccccaagtgtgtgaatcccatgcgccgcgacctagataactaatatattgggctgatcttaggttcttacatgttatatgtagagataaataggtaaaaggataccataatgtataattacgtataaagcatgtcttactgacatgttattgtgaatttttaatgggcctttgtttatggaattcacaacttgtagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="62785" stop="61392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62485" g_stop="62206" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62205" i_stop="62137" i_length="69">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62136" g_stop="61692" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="724" r_length="445" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E585450" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585450" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62485" e_stop="62206"/>
          <exon e_start="62136" e_stop="61692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAA-TGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAATCCCATTTGATGATCCAACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAAACAGTGACCAAACAAGGTATGTAGTATTATCACGTGTTACCATCTCATTTGAAAGCTTTCATTACTTAATGTTATGTCTCGACAGGTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTT</genome_strand>
        <mrna_strand>CAATTGGTGCATTCCTGCG-AAAAATTTACTCCGAGGTTAATTTCAGTCTAC-AAAAGATTAAGCAGCAGCTAGAGGGAAAGGAGGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTGGATTTCACAACGTATTTCGAGACCATGCCCTGGCTAGCAATTCCATTTGATGATCCAACAATCAATGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATACTGGGCCCTGATGGTAAAACAGTGACCAAACAAG.....................................................................GTAGGAGCCTCATCAACTTATATAAAGAGAATGCTTACCCATTCACAAAGACTAGAGTAGGCATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCAGGCCATCGACACGAGCTCACTTTAGTACCAGAAGGCCATGGAGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACACCCCAAGTGTGTGAATCCCATGCGCCGCGACCTAGATAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATAATGTATAATTACGTATAAAGCATGTCTTACTGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703866" ref_strand="+" ref_description="SGN-E703866 [FA22CG05]">
      <seq>gtcgaaggtatcccttgtttgatagttctactacctaacgatgacaaattagacactgcagttattaaagacggagttgaactcgtgtatcgatatggagtccaagcttttccgtttaccaaagaaaggttggacgagttacgaaagaaggagaaggagaaacgtgacaaccagacattgagcagtttgctaacacacgatgccagagatgttctttcggggcatcctagtcctaaacaagtgtctgttgcttctttaaaggggaaaacagttggactttacttctcagctcaatggtgcaatcctgcgaaaaaatttactccgaggttaatttcagtctacaaaaagattaagcagcagctagagggaaaggatgatgaggatttcgagatagtgttcgtatcaagtgaccataaccaagttgatttcacaacgtattttgagaccatgccctggctagcaatcccatttgatgatccaacaatcaaagctctagctaagtattttgatatccgagggattccgagcctagtgatattgggccctgatggtaaaacagtgaccaaacaaggtaggagcctcatcaacttatacaaagagaacgcttacccattcacaaagactagaatagatatattagagaagcaaatggatgaaatagcaaaaggccttcctaagacagagaaccattcgggccatcgacacgagctcactttagtaccagagggccatgggggtggagcttttatctgttgtgattgtgatgaacaggcctatggatgggcttaccaatgccttgagtgtggctatgaggtacatccccagtgtgtgaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="63209" stop="61572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62909" g_stop="62670" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62669" i_stop="62537" i_length="133">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62536" g_stop="62206" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="571" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62205" i_stop="62137" i_length="69">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62136" g_stop="61872" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="836" r_length="265" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E703866" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62909" e_stop="62670"/>
          <exon e_start="62536" e_stop="62206"/>
          <exon e_start="62136" e_stop="61872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAAGTGAGTCAGTCTTTCATACATGAATAGATTGTGAAACGTAGTGCCTCTTGATTACAACTTGTTACATGTTAAATGCGTACTCGAGATATTCACCACTTCTATTGTGCATACTTTTATACATTTCACTTTGTAGGTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAATCCCATTTGATGATCCAACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAAACAGTGACCAAACAAGGTATGTAGTATTATCACGTGTTACCATCTCATTTGAAAGCTTTCATTACTTAATGTTATGTCTCGACAGGTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCC</genome_strand>
        <mrna_strand>GTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAA.....................................................................................................................................GTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAATCCCATTTGATGATCCAACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAAACAGTGACCAAACAAG.....................................................................GTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGCCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCCAGTGTGTGAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701679" ref_strand="+" ref_description="SGN-E701679 [FA16CF02]">
      <seq>tgatgatgacttaaatgccttcaatacttataggtcatcaatgccttggcttgcaattcctttctctgatttggaaacaaggagagcccttacccaaaagtttgatgtcgaaggtatcccttgtttgatagttctactacctaacgatgacaaattagacactgcagttattaaagacggagttgaactcgtgtatcgatatggagtccaagcttttccgtttaccaaagaaaggttggacgagttacgaaagaaggagaaggagaaacgtgacaaccagacattgagcagtttgctaacacacgatgccagagatgttctttcggggcatcctagtcctaaacaagtgtctgttgcttctttaaaggggaaaacagttggactttacttctcagctcaatggtgcaatcctgcgaaaaaatttactccgaggttaatttcagtctacaaaaagattaagcagcagctagagggaaaggatgatgaggatttcgagatagtgttcgtatcaagtgaccataaccaagttgatttcacaacgtattttgagaccatgccctggctagcaatcccatttgatgatccaacaatcaaagctctagctaagtattttgatatccgagggattccgagcctagtgatattgggccctgatggtaaaacagtgaccaaacaaggtaggagcctcatcaacttatacaaagagaacgcttacccattcacaaagactagaatagatatattagagaagcaaatggatgaaatagcaaaaggccttcctaagacagagaaccattcgggccatcgacacgagctcactttagtaaccagagggccatggggggtggagcttttatctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="63315" stop="61654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63015" g_stop="62670" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62669" i_stop="62537" i_length="133">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62536" g_stop="62206" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="677" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62205" i_stop="62137" i_length="69">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62136" g_stop="61954" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="862" r_length="185" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E701679" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63015" e_stop="62670"/>
          <exon e_start="62536" e_stop="62206"/>
          <exon e_start="62136" e_stop="61954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAAGTGAGTCAGTCTTTCATACATGAATAGATTGTGAAACGTAGTGCCTCTTGATTACAACTTGTTACATGTTAAATGCGTACTCGAGATATTCACCACTTCTATTGTGCATACTTTTATACATTTCACTTTGTAGGTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAATCCCATTTGATGATCCAACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAAACAGTGACCAAACAAGGTATGTAGTATTATCACGTGTTACCATCTCATTTGAAAGCTTTCATTACTTAATGTTATGTCTCGACAGGTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGT-ACCAGAGGGCCAT-GGGGGTGGAGCTTTTATCTGTT</genome_strand>
        <mrna_strand>TGATGATGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAA.....................................................................................................................................GTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAATCCCATTTGATGATCCAACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAAACAGTGACCAAACAAG.....................................................................GTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTAACCAGAGGGCCATGGGGGGTGGAGCTTTTATCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569930" ref_strand="+" ref_description="SGN-E569930 [14434]">
      <seq>gaaaggttggacgagttacgagagaaggagaaggagaaacgtgacaaccagaccttgagcaatttgctaacacacgatgccagagatgttcttttggggcatcctagtcctaaacaagtttctgttgcttctttaaaggggaaaacagttggactttacttctcagctcaatggtgcattcctgcgaaaaaatttactccgaggttaatttcagtctacaaaaagattaagcagcagctagagggaaaggaggatgaggatttcgagatagtgttcgtatcaagtgaccataaccaagtggatttcacaacgtatttcgagaccatgccctggctagcaattccatttgatgatccaacaatcagtgctctagctaagtattttgatatccgagggattccgagcctagtgatactgggccctgatggtaaaacagtgaccaaacaaggtaggagcctcatcaacttatataaagagaatgcttacccattcacaaagactagagtaggcatattagagaagcaaatggatgaaatagcaaaaggccttcctaagacagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="63086" stop="61724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62786" g_stop="62670" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62669" i_stop="62537" i_length="133">
            <donor d_prob="0.888" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62536" g_stop="62206" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="448" r_length="331" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62205" i_stop="62137" i_length="69">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62136" g_stop="62024" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="561" r_length="113" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E569930" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62786" e_stop="62670"/>
          <exon e_start="62536" e_stop="62206"/>
          <exon e_start="62136" e_stop="62024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAAGTGAGTCAGTCTTTCATACATGAATAGATTGTGAAACGTAGTGCCTCTTGATTACAACTTGTTACATGTTAAATGCGTACTCGAGATATTCACCACTTCTATTGTGCATACTTTTATACATTTCACTTTGTAGGTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAATCCCATTTGATGATCCAACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAAACAGTGACCAAACAAGGTATGTAGTATTATCACGTGTTACCATCTCATTTGAAAGCTTTCATTACTTAATGTTATGTCTCGACAGGTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAG</genome_strand>
        <mrna_strand>GAAAGGTTGGACGAGTTACGAGAGAAGGAGAAGGAGAAACGTGACAACCAGACCTTGAGCAATTTGCTAACACACGATGCCAGAGATGTTCTTTTGGGGCATCCTAGTCCTAAACAA.....................................................................................................................................GTTTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCATTCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGAGGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTGGATTTCACAACGTATTTCGAGACCATGCCCTGGCTAGCAATTCCATTTGATGATCCAACAATCAGTGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATACTGGGCCCTGATGGTAAAACAGTGACCAAACAAG.....................................................................GTAGGAGCCTCATCAACTTATATAAAGAGAATGCTTACCCATTCACAAAGACTAGAGTAGGCATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710522" ref_strand="+" ref_description="SGN-E710522 [FA55CG10]">
      <seq>caatgatggcgaatttctcctttctcccaccggagctcaggtgaaagtttcggaacttgagggcaaagttgttggcctttacttttcagctaactggtattcaccatgtacgaagtttacaaacctgttagtcaatgtgtatcagcagcttaaggaatgcagcaatatcaatctcggtttcgaaatcgtctttgtttcgtctgatgaagacttaaatgccttcaatacttataggtcatcaatgccttggcttgcaattcctttctctgatttggaaacaaggagagcccttacccaaaagtttgatgtcgaaggtatcccttgtttgatagttctactacctaacgatgacaaattagacactgcagttattaaagacggagttgaactcgtgtatcgatatggagtccaagcttttccgtttaccaaagaaaggttggacgagttacgaaagaaggagaaggagaaacgtgacaaccagacattgagcagtttgctaacacacgatgccagagatgttctttcggggcatcctagtcctaaacaagtgtctgttgcttctttaaaggggaaaacagttggactttacttctcagctcaatggtgcaatcctgcgaaaaaatttactccgaggttaatttcagtctacaaaaagattaagcagcagctagagggaaaggatgatgaggatttcgagatagtgttcgtatcaagtgaccataaccaagttgatttcacaacgtattttgagaccatgccctggctagcaatcccatttgatgatcccacaatcaaagctctagctaagtattttgatatccgagggattccgagcctagtgatattgggccctgatggtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="64390" stop="61922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64090" g_stop="64051" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64050" i_stop="63177" i_length="874">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63176" g_stop="62670" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="547" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62669" i_stop="62537" i_length="133">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62536" g_stop="62222" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="862" r_length="315" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E710522" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64090" e_stop="64051"/>
          <exon e_start="63176" e_stop="62670"/>
          <exon e_start="62536" e_stop="62222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAGGTATGATTTGCGTTTTCGTTGTTGAAATAAACTATTAACTGAATACAGAGAAAACTGTAGCTTATATCCTATAACAGTAGCATTACGGCGAAAAATTAACTTACAGAGTTTGCGTATAATGTTGTTGTTGGTGATGAGATGTATACGATTCCTTTTCATTAAACTATAAGTCTCGGATTTGAGTTTCGAGTATGAGAAAGAATGTGATAGAGAGTGTTTAACGGGTGCCGATTCAAATTAATGGAGATCTATGGAAACTGAAGGGCTCAGATTCGGCTCTGATCCCTACTAGGAAAATAGAATTAATTATCATTTATCAATGGGAATTCAAGAGTATATGAAATGAAGTTTACATATTTGAAAATTACAAGTAGAAGCCTAATAGATACATTGATTTGAGGAAGTGAATATGTATTCTTTAAGTTATAATCTTTTTGTTCTAAGTAGCACTTGAGAAATCACGAACGTAGATCTCGAATTACGATCTACTTTAGATGATTTGAATAAGGACATGTTGGTATCTCAAAGTAACAATAGTAAATGGACTAATGTAAATTTGATATCTTTGGTATGACCATTATCTAATTGGAGAGTTACAACTCGAAACATTGTGAAGCTGCAATTGGTATAGTTATGGTCCGCGATTTGTTAGTATCTTGAATTTTGCACTATAGGCGTATATGATAGCATCCCCTTTTATGTATTTATCCGTTCTCTATTGATGTAAAAGGTCCATTTCTCTCCGGACATGATAGTCTGCGTGTTTGTGTGTGTGTAATCGTTAAACTCAATGAGATGATCTTATCTTTTGCTCCATTGGAATAATCTTACATGTACTTTAATGATGTAGTGGTTGTGTTGGTGAATGACACAGGTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAAGTGAGTCAGTCTTTCATACATGAATAGATTGTGAAACGTAGTGCCTCTTGATTACAACTTGTTACATGTTAAATGCGTACTCGAGATATTCACCACTTCTATTGTGCATACTTTTATACATTTCACTTTGTAGGTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAATCCCATTTGATGATCCAACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAA</genome_strand>
        <mrna_strand>CAATGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAA.....................................................................................................................................GTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAATCCCATTTGATGATCCCACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698779" ref_strand="+" ref_description="SGN-E698779 [FA07CC08]">
      <seq>aatgccttggcttgcaattcctttctctgatttggaaaccaggagagcccttacccaaaagtttgatgtcgaaggtatcccttgcttgatagttctactacctaacgatgacaaattagacactgcagttattaaagacggagttgaactcgtgtatcgatatggagtccaagcttttccgtttacccaagaaaggttggacgagttacgaaagaaggagaaggagaaacctgacaaccacacattgagcagtttgctaacacacgatgccagagatgttctttcggggcatcctagtcctaaacaagtgtctgttgcttctttaaaggggaaaacagttggactttacttctcagctcaatggtgcaatcctgcgaaaaaatttactccgaggttaatttcagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="63276" stop="62136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62976" g_stop="62670" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62669" i_stop="62537" i_length="133">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62536" g_stop="62436" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="408" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E698779" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62976" e_stop="62670"/>
          <exon e_start="62536" e_stop="62436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAAGTGAGTCAGTCTTTCATACATGAATAGATTGTGAAACGTAGTGCCTCTTGATTACAACTTGTTACATGTTAAATGCGTACTCGAGATATTCACCACTTCTATTGTGCATACTTTTATACATTTCACTTTGTAGGTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTA</genome_strand>
        <mrna_strand>AATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACCAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGCTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCCAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACCTGACAACCACACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAA.....................................................................................................................................GTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272784" ref_strand="+" ref_description="SGN-E272784 [cLEM-21-H20]">
      <seq>gaatgccagcaatatcaatctcggtttcgaaatcgtctttgtttcgtctgatgaagacttaaatgccttcaataccttataggtcatcaatgccttggcttgcaattcctttctctgatttggaaaccaaggagagcccttacccaaaagtttgatgtcgaaggtatcccttgtttgatagttctactacctaacgatgacaaattagacacctgcagttattaaagacggagttgaactcgtgtatcgatatggagtccaagcttttccgtttaccaaagaaaggttggaccgagttaccgaaagaaggagaaggagaaacctgaccaccagacattgagcagtttgctaacacaccatgccagagatgttctttcggggccatcctagtcctaaacaagtgtctgttgcttctttaaaggggaaaacagttggactttacttctcagctcaatggtgccaatcctgcgaaaaaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="63362" stop="62158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63062" g_stop="62670" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62669" i_stop="62537" i_length="133">
            <donor d_prob="0.888" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62536" g_stop="62458" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="480" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E272784" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63062" e_stop="62670"/>
          <exon e_start="62536" e_stop="62458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATG-CAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATA-CTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAA-CAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACA-CTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGA-CGAGTTA-CGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGG-CATCCTAGTCCTAAACAAGTGAGTCAGTCTTTCATACATGAATAGATTGTGAAACGTAGTGCCTCTTGATTACAACTTGTTACATGTTAAATGCGTACTCGAGATATTCACCACTTCTATTGTGCATACTTTTATACATTTCACTTTGTAGGTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTG-CAATCCTGCGAAAAAATTTA</genome_strand>
        <mrna_strand>GAATGCCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACCTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACCAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACCTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACCGAGTTACCGAAAGAAGGAGAAGGAGAAACCTGACCACCAGACATTGAGCAGTTTGCTAACACACCATGCCAGAGATGTTCTTTCGGGGCCATCCTAGTCCTAAACAA.....................................................................................................................................GTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCCAATCCTGCGAAAAAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449839" ref_strand="+" ref_description="SGN-E449839 [cSTS-7-L19]">
      <seq>gaatattactagtattaaggaagaagaagcagaagaagaaattgataatagttttgttcctgtttatcactcttttgcttctaaaaattatcattctcatcttgtttctgatgattatttgtcgattttagcatccaaagattatgattttcttctttcgcccaccggagctcaggtgaaagtttcggaacttgagggcaaagttgttggcctttacttttcagctaactggtattcaccatgtacgaagtttacaaacctgctagtcaatgtgtaccaacagcttaaggaatgcagcaatatcaatctcggtttcgaaattgtatttatttcgtccgatgaaaacttaaatgccttcaatacttataggtcatcaatgccttggcttgcaattccattctctgatttggaaacaaggagggcccttacccaaaagtttgatgtcgaaggtatcccttgtatgataattctacaacctaacgataacaaattagacgctgcagttattaaagatggagttgaactggtgtatcgatatggagtgcaagcttttccgtttaccaaagaaaggttggacgagttacgagagaaggagaaggagaaacatgaccaccagaccttgagcaatttgctaacacacgatgccagagatgttcttttggggcatcctagtcctaaacaagtttctgttgcttctttaaaggggaaaacagttgactttacttctcagctcaatggtgcattcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="64525" stop="62170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64225" g_stop="64051" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64050" i_stop="63177" i_length="874">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63176" g_stop="62670" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="682" r_length="507" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62669" i_stop="62537" i_length="133">
            <donor d_prob="0.888" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62536" g_stop="62470" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="748" r_length="66" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E449839" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64225" e_stop="64051"/>
          <exon e_start="63176" e_stop="62670"/>
          <exon e_start="62536" e_stop="62470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATTACTAGTATGAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAGGTATGATTTGCGTTTTCGTTGTTGAAATAAACTATTAACTGAATACAGAGAAAACTGTAGCTTATATCCTATAACAGTAGCATTACGGCGAAAAATTAACTTACAGAGTTTGCGTATAATGTTGTTGTTGGTGATGAGATGTATACGATTCCTTTTCATTAAACTATAAGTCTCGGATTTGAGTTTCGAGTATGAGAAAGAATGTGATAGAGAGTGTTTAACGGGTGCCGATTCAAATTAATGGAGATCTATGGAAACTGAAGGGCTCAGATTCGGCTCTGATCCCTACTAGGAAAATAGAATTAATTATCATTTATCAATGGGAATTCAAGAGTATATGAAATGAAGTTTACATATTTGAAAATTACAAGTAGAAGCCTAATAGATACATTGATTTGAGGAAGTGAATATGTATTCTTTAAGTTATAATCTTTTTGTTCTAAGTAGCACTTGAGAAATCACGAACGTAGATCTCGAATTACGATCTACTTTAGATGATTTGAATAAGGACATGTTGGTATCTCAAAGTAACAATAGTAAATGGACTAATGTAAATTTGATATCTTTGGTATGACCATTATCTAATTGGAGAGTTACAACTCGAAACATTGTGAAGCTGCAATTGGTATAGTTATGGTCCGCGATTTGTTAGTATCTTGAATTTTGCACTATAGGCGTATATGATAGCATCCCCTTTTATGTATTTATCCGTTCTCTATTGATGTAAAAGGTCCATTTCTCTCCGGACATGATAGTCTGCGTGTTTGTGTGTGTGTAATCGTTAAACTCAATGAGATGATCTTATCTTTTGCTCCATTGGAATAATCTTACATGTACTTTAATGATGTAGTGGTTGTGTTGGTGAATGACACAGGTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAAGTGAGTCAGTCTTTCATACATGAATAGATTGTGAAACGTAGTGCCTCTTGATTACAACTTGTTACATGTTAAATGCGTACTCGAGATATTCACCACTTCTATTGTGCATACTTTTATACATTTCACTTTGTAGGTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTG</genome_strand>
        <mrna_strand>GAATATTACTAGTATTAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTTCCTGTTTATCACTCTTTTGCTTCTAAAAATTATCATTCTCATCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATTATGATTTTCTTCTTTCGCCCACCGGAGCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGCTAGTCAATGTGTACCAACAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATTGTATTTATTTCGTCCGATGAAAACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCATTCTCTGATTTGGAAACAAGGAGGGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTATGATAATTCTACAACCTAACGATAACAAATTAGACGCTGCAGTTATTAAAGATGGAGTTGAACTGGTGTATCGATATGGAGTGCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAGAGAAGGAGAAGGAGAAACATGACCACCAGACCTTGAGCAATTTGCTAACACACGATGCCAGAGATGTTCTTTTGGGGCATCCTAGTCCTAAACAA.....................................................................................................................................GTTTCTGTTGCTTCTTTAAAGGGGAAAACAGTT-GACTTTACTTCTCAGCTCAATGGTGCATTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333713" ref_strand="+" ref_description="SGN-E333713 [cTOD-22-K23]">
      <seq>aaattgataatagttttgtacctgtttatcactcttttgcttctaaaagttatcattctcaccttgtttctgatgattatttgtcgattttagcatccaaagatggcgaatttctcctttctcccaccggagctcaggtgaaagtttcggaacttgagggcaaagttgttggcctttacttttcagctaactggtattcaccatgtacgaagtttacaaacctgttagtcaatgtgtatcagcagcttaaggaatgcagcaatatcaatctcggtttcgaaatcgtctttgtttcgtctgatgaagacttaaatgccttcaatacttataggtcatcaatgccttggcttgcaattcctttctctgatttggaaacaaggagagcccttacccaaaagtttgatgtcgaaggtatcccttgtttgatagttctactacctaacgatgacaaattagacactgcagttattaaagacggagttgaactcgtgtatcgatatggagtccaagcttttccgtttaccaaagaaaggttggacgagttacgaaagaaggagaaggagaaacgtgacaaccagacattgagcagtttgctaacacacgatgccagagatgttctttcggggcatcctagtcctaaacaagtgtctgttgcttctttaaggggaaaacagttggactttacttctcagctcaatggtgcaatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="64487" stop="62170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64187" g_stop="64051" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64050" i_stop="63177" i_length="874">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63176" g_stop="62670" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="644" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62669" i_stop="62537" i_length="133">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62536" g_stop="62470" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="710" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E333713" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64187" e_stop="64051"/>
          <exon e_start="63176" e_stop="62670"/>
          <exon e_start="62536" e_stop="62470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAGGTATGATTTGCGTTTTCGTTGTTGAAATAAACTATTAACTGAATACAGAGAAAACTGTAGCTTATATCCTATAACAGTAGCATTACGGCGAAAAATTAACTTACAGAGTTTGCGTATAATGTTGTTGTTGGTGATGAGATGTATACGATTCCTTTTCATTAAACTATAAGTCTCGGATTTGAGTTTCGAGTATGAGAAAGAATGTGATAGAGAGTGTTTAACGGGTGCCGATTCAAATTAATGGAGATCTATGGAAACTGAAGGGCTCAGATTCGGCTCTGATCCCTACTAGGAAAATAGAATTAATTATCATTTATCAATGGGAATTCAAGAGTATATGAAATGAAGTTTACATATTTGAAAATTACAAGTAGAAGCCTAATAGATACATTGATTTGAGGAAGTGAATATGTATTCTTTAAGTTATAATCTTTTTGTTCTAAGTAGCACTTGAGAAATCACGAACGTAGATCTCGAATTACGATCTACTTTAGATGATTTGAATAAGGACATGTTGGTATCTCAAAGTAACAATAGTAAATGGACTAATGTAAATTTGATATCTTTGGTATGACCATTATCTAATTGGAGAGTTACAACTCGAAACATTGTGAAGCTGCAATTGGTATAGTTATGGTCCGCGATTTGTTAGTATCTTGAATTTTGCACTATAGGCGTATATGATAGCATCCCCTTTTATGTATTTATCCGTTCTCTATTGATGTAAAAGGTCCATTTCTCTCCGGACATGATAGTCTGCGTGTTTGTGTGTGTGTAATCGTTAAACTCAATGAGATGATCTTATCTTTTGCTCCATTGGAATAATCTTACATGTACTTTAATGATGTAGTGGTTGTGTTGGTGAATGACACAGGTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAAGTGAGTCAGTCTTTCATACATGAATAGATTGTGAAACGTAGTGCCTCTTGATTACAACTTGTTACATGTTAAATGCGTACTCGAGATATTCACCACTTCTATTGTGCATACTTTTATACATTTCACTTTGTAGGTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTG</genome_strand>
        <mrna_strand>AAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAA.....................................................................................................................................GTGTCTGTTGCTTCTTT-AAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698194" ref_strand="+" ref_description="SGN-E698194 [FA05CC02]">
      <seq>ccgtttattttagcatccaaagatggcgaatttctcctttctcccaccggagctcaggtgaaagtttcggaacttgagggcaaagttgttggcctttacttttcagctaactggtattcaccatgtacgaagtttacaaacctgttagtcaatgtgtatcagcagcttaaggaatgcagcaatatcaatctcggtttcgaaatcgtctttgtttcgtctgatgaagacttaaatgccttcaatacttataggtcatcaatgccttggcttgcaattcctttctctgatttggaaacaaggagagcccttacccaaaagtttgatgtcgaaggtatcccttgtttgatagttctactacctaacgatgacaaattagacactgcagttattaaagacggagttgaactcgtgtatcgatatggagtccaagcttttccgtttaccaaagaaaggttggacgagttacgaaagaaggagaaggagaaacgtgacaaccagacattgagcagtttgctaacacacgatgccagagatgttctttcggggcatcctagtcctaaacaagtgtctgttgcttctttaaaggggaaaacagttggactttacttctcagctcaatggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="64405" stop="62178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64107" g_stop="64051" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64050" i_stop="63177" i_length="874">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63176" g_stop="62670" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="564" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62669" i_stop="62537" i_length="133">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62536" g_stop="62478" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="623" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E698194" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64107" e_stop="64051"/>
          <exon e_start="63176" e_stop="62670"/>
          <exon e_start="62536" e_stop="62478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAGGTATGATTTGCGTTTTCGTTGTTGAAATAAACTATTAACTGAATACAGAGAAAACTGTAGCTTATATCCTATAACAGTAGCATTACGGCGAAAAATTAACTTACAGAGTTTGCGTATAATGTTGTTGTTGGTGATGAGATGTATACGATTCCTTTTCATTAAACTATAAGTCTCGGATTTGAGTTTCGAGTATGAGAAAGAATGTGATAGAGAGTGTTTAACGGGTGCCGATTCAAATTAATGGAGATCTATGGAAACTGAAGGGCTCAGATTCGGCTCTGATCCCTACTAGGAAAATAGAATTAATTATCATTTATCAATGGGAATTCAAGAGTATATGAAATGAAGTTTACATATTTGAAAATTACAAGTAGAAGCCTAATAGATACATTGATTTGAGGAAGTGAATATGTATTCTTTAAGTTATAATCTTTTTGTTCTAAGTAGCACTTGAGAAATCACGAACGTAGATCTCGAATTACGATCTACTTTAGATGATTTGAATAAGGACATGTTGGTATCTCAAAGTAACAATAGTAAATGGACTAATGTAAATTTGATATCTTTGGTATGACCATTATCTAATTGGAGAGTTACAACTCGAAACATTGTGAAGCTGCAATTGGTATAGTTATGGTCCGCGATTTGTTAGTATCTTGAATTTTGCACTATAGGCGTATATGATAGCATCCCCTTTTATGTATTTATCCGTTCTCTATTGATGTAAAAGGTCCATTTCTCTCCGGACATGATAGTCTGCGTGTTTGTGTGTGTGTAATCGTTAAACTCAATGAGATGATCTTATCTTTTGCTCCATTGGAATAATCTTACATGTACTTTAATGATGTAGTGGTTGTGTTGGTGAATGACACAGGTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAAGTGAGTCAGTCTTTCATACATGAATAGATTGTGAAACGTAGTGCCTCTTGATTACAACTTGTTACATGTTAAATGCGTACTCGAGATATTCACCACTTCTATTGTGCATACTTTTATACATTTCACTTTGTAGGTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTG</genome_strand>
        <mrna_strand>CCGTTTATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAA.....................................................................................................................................GTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719402" ref_strand="+" ref_description="SGN-E719402 [FC07DA06]">
      <seq>agaaattgataatagttttgtacctgtttatcactcttttgcttctaaaacctatcattctcaccttgtttctgatgattatttgtcgattttagcatccaaagatggcgaatttctcctttctcccaccggagctcaggtgaaagtttcggaacttgagggcaaagttgttggcctttacttttcagctaactggtattcaccatgtacgaagtttacaaacctgttagtcaatgtgtatcagcagcttaaggaatgcagcaatatcaatctcggtttcgaaatcgtctttgtttcgtctgatgaagacttaaatgccttcaatacttataggtcatcaatgccttggcttgcaattcctttctctgatttggaaacaaggagagcccttacccaaaagtttgatgtcgaaggtatcccttgtttgatagttctactacctaacgatgacaaattagacactgcagttattaaagacggagttgaactcgtgtatcgatatggagtccaagcttttccgtttaccaaagaaaggttggacgagttacgaaagaaggagaaggagaaacgtgacaaccagacattgagcagtttgctaacacacgatgccagagatgttctttcggggcatcctagtcctaaacaagtgtctgttgcttctttaaaggggaaaacagttggactttacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="64489" stop="62192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64189" g_stop="64051" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64050" i_stop="63177" i_length="874">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63176" g_stop="62670" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="646" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62669" i_stop="62537" i_length="133">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62536" g_stop="62492" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="691" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E719402" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64189" e_stop="64051"/>
          <exon e_start="63176" e_stop="62670"/>
          <exon e_start="62536" e_stop="62492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAGGTATGATTTGCGTTTTCGTTGTTGAAATAAACTATTAACTGAATACAGAGAAAACTGTAGCTTATATCCTATAACAGTAGCATTACGGCGAAAAATTAACTTACAGAGTTTGCGTATAATGTTGTTGTTGGTGATGAGATGTATACGATTCCTTTTCATTAAACTATAAGTCTCGGATTTGAGTTTCGAGTATGAGAAAGAATGTGATAGAGAGTGTTTAACGGGTGCCGATTCAAATTAATGGAGATCTATGGAAACTGAAGGGCTCAGATTCGGCTCTGATCCCTACTAGGAAAATAGAATTAATTATCATTTATCAATGGGAATTCAAGAGTATATGAAATGAAGTTTACATATTTGAAAATTACAAGTAGAAGCCTAATAGATACATTGATTTGAGGAAGTGAATATGTATTCTTTAAGTTATAATCTTTTTGTTCTAAGTAGCACTTGAGAAATCACGAACGTAGATCTCGAATTACGATCTACTTTAGATGATTTGAATAAGGACATGTTGGTATCTCAAAGTAACAATAGTAAATGGACTAATGTAAATTTGATATCTTTGGTATGACCATTATCTAATTGGAGAGTTACAACTCGAAACATTGTGAAGCTGCAATTGGTATAGTTATGGTCCGCGATTTGTTAGTATCTTGAATTTTGCACTATAGGCGTATATGATAGCATCCCCTTTTATGTATTTATCCGTTCTCTATTGATGTAAAAGGTCCATTTCTCTCCGGACATGATAGTCTGCGTGTTTGTGTGTGTGTAATCGTTAAACTCAATGAGATGATCTTATCTTTTGCTCCATTGGAATAATCTTACATGTACTTTAATGATGTAGTGGTTGTGTTGGTGAATGACACAGGTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAAGTGAGTCAGTCTTTCATACATGAATAGATTGTGAAACGTAGTGCCTCTTGATTACAACTTGTTACATGTTAAATGCGTACTCGAGATATTCACCACTTCTATTGTGCATACTTTTATACATTTCACTTTGTAGGTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTC</genome_strand>
        <mrna_strand>AGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAACCTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAA.....................................................................................................................................GTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450083" ref_strand="+" ref_description="SGN-E450083 [cSTS-8-G20]">
      <seq>gagattggaaaaaaatggaggaattggagaagaagaatattactagtattaaggaagaagaagcagaagaagaaattgataatagttttgttcctgtttatcactcttttgcttctaaaaattatcattctcatcttgtttctgatgattatttgtcaattttagcatccaaagatggtgattttcttctttcgcccaccggagctcaggtgaaagtttcggaacttgagggcaaagttgttggcctttacttttcagctaactggtattcaccatgtacgaagtttacaaacctgctagtcaatgtgtaccaacagcttaaggaatgcagcaatatcaatctcgggttcgaaattgtatttgtttcgtctgatgaaaacgtaaatgccttcaatacttataggtcatcaatgccttggtttgcaattccattctctgatttggaaacaaggagggcccttacccaaaaatttgatgttgaaggtattccttgtttgataattctacaacctaacaatgacaaattagacactgcagttattaaagacggagttgaactcgtgtatcgatatggagtgcaagcttttccgtttacgaaagaaaggttggacgagttacgaaagaaggagaaggagaaacgtgacaaccagaccttnggcaatttgctaacacacgatgccagagatgttctttcggggcatcctagtcctaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="64551" stop="62372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64262" g_stop="64051" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64050" i_stop="63177" i_length="874">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63176" g_stop="62672" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="714" r_length="505" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E450083" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64262" e_stop="64051"/>
          <exon e_start="63176" e_stop="62672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGAGAAAAAAAAATGGAGGAATTGGAGAAGAAGAATATTACTAGTATGAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAGGTATGATTTGCGTTTTCGTTGTTGAAATAAACTATTAACTGAATACAGAGAAAACTGTAGCTTATATCCTATAACAGTAGCATTACGGCGAAAAATTAACTTACAGAGTTTGCGTATAATGTTGTTGTTGGTGATGAGATGTATACGATTCCTTTTCATTAAACTATAAGTCTCGGATTTGAGTTTCGAGTATGAGAAAGAATGTGATAGAGAGTGTTTAACGGGTGCCGATTCAAATTAATGGAGATCTATGGAAACTGAAGGGCTCAGATTCGGCTCTGATCCCTACTAGGAAAATAGAATTAATTATCATTTATCAATGGGAATTCAAGAGTATATGAAATGAAGTTTACATATTTGAAAATTACAAGTAGAAGCCTAATAGATACATTGATTTGAGGAAGTGAATATGTATTCTTTAAGTTATAATCTTTTTGTTCTAAGTAGCACTTGAGAAATCACGAACGTAGATCTCGAATTACGATCTACTTTAGATGATTTGAATAAGGACATGTTGGTATCTCAAAGTAACAATAGTAAATGGACTAATGTAAATTTGATATCTTTGGTATGACCATTATCTAATTGGAGAGTTACAACTCGAAACATTGTGAAGCTGCAATTGGTATAGTTATGGTCCGCGATTTGTTAGTATCTTGAATTTTGCACTATAGGCGTATATGATAGCATCCCCTTTTATGTATTTATCCGTTCTCTATTGATGTAAAAGGTCCATTTCTCTCCGGACATGATAGTCTGCGTGTTTGTGTGTGTGTAATCGTTAAACTCAATGAGATGATCTTATCTTTTGCTCCATTGGAATAATCTTACATGTACTTTAATGATGTAGTGGTTGTGTTGGTGAATGACACAGGTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAAC</genome_strand>
        <mrna_strand>GAGATTG-GAAAA-AA-ATGGAGGAATTGGAGAAGAAGAATATTACTAGTATTAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTTCCTGTTTATCACTCTTTTGCTTCTAAAAATTATCATTCTCATCTTGTTTCTGATGATTATTTGTCAATTTTAGCATCCAAAGATGGTGATTTTCTTCTTTCGCCCACCGGAGCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGCTAGTCAATGTGTACCAACAGCTTAAGGAATGCAGCAATATCAATCTCGGGTTCGAAATTGTATTTGTTTCGTCTGATGAAAACGTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGTTTGCAATTCCATTCTCTGATTTGGAAACAAGGAGGGCCCTTACCCAAAAATTTGATGTTGAAGGTATTCCTTGTTTGATAATTCTACAACCTAACAATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTGCAAGCTTTTCCGTTTACGAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACCTTNGGCAATTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273954" ref_strand="+" ref_description="SGN-E273954 [cLEN-7-F10]">
      <seq>ttcaccatgttcgaagtttacaaacctgttagtcaatgtgtatcagcagcttaaggaatgcagcaatatcaatctcggtttcgaaatcgtctttgtttcgtctgatgaagacttaaatgccttcaatacttataggtcatcaatgccttggcttgcaattcctttctctgatttggaaacaaggagagcccttacccaaaagtttgatgtcgaaggtatcccttgtttgatagttctactacctaacgatgacaaattagacactgcagttattaaagacggagttgaactcgtgtatcgatatggagtccaagcttttccgtttaccaaagaaaggttggacgagttacgaaagaaggagaaggagaaacgtgacaaccagacattgagcagtttgctaacacacgatgccagagatgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="63417" stop="62394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63117" g_stop="62694" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E273954" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63117" e_stop="62694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTT</genome_strand>
        <mrna_strand>TTCACCATGTTCGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211517" ref_strand="+" ref_description="SGN-E211517 [cLEC-67-H12]">
      <seq>aaaatggaggaattggagaagaagaatattactagtatgaaggaagaagaagcagaagaagaaattgataatagttttgtacctgtttatcactcttttgcttctaaaagttatcattctcaccttgtttctgatgattatttgtcgattttagcatccaaagatggcgaatttctcctttctcccaccggagctcaggtgaaagtttcggaacttgagggcaaagttgttggcctttacttttcagctaactggtattcaccatgtacgaagtttacaaacctgttagtcaatgtgtatcagcagcttaaggaatgcagcaatatcaatctcggtttcgaaatcgtctttgtttcgtctgatgaagacttaaatgccttcaatacttataggtcatcaatgccttggcttgcaattcctttctctgatttggaaacaaggagagcccttacccaaaagtttgatgtcgaaggtatcccttgtttgatagttctactacctaacgatgacaaattagacactgcagttattaaagacggagttgaactcgtgtatcgatatggagtccaagcttttccgtttaccaaagaaaggttggacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="64548" stop="62472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64248" g_stop="64051" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64050" i_stop="63177" i_length="874">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63176" g_stop="62772" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="603" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E211517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64248" e_stop="64051"/>
          <exon e_start="63176" e_stop="62772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGAGGAATTGGAGAAGAAGAATATTACTAGTATGAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAGGTATGATTTGCGTTTTCGTTGTTGAAATAAACTATTAACTGAATACAGAGAAAACTGTAGCTTATATCCTATAACAGTAGCATTACGGCGAAAAATTAACTTACAGAGTTTGCGTATAATGTTGTTGTTGGTGATGAGATGTATACGATTCCTTTTCATTAAACTATAAGTCTCGGATTTGAGTTTCGAGTATGAGAAAGAATGTGATAGAGAGTGTTTAACGGGTGCCGATTCAAATTAATGGAGATCTATGGAAACTGAAGGGCTCAGATTCGGCTCTGATCCCTACTAGGAAAATAGAATTAATTATCATTTATCAATGGGAATTCAAGAGTATATGAAATGAAGTTTACATATTTGAAAATTACAAGTAGAAGCCTAATAGATACATTGATTTGAGGAAGTGAATATGTATTCTTTAAGTTATAATCTTTTTGTTCTAAGTAGCACTTGAGAAATCACGAACGTAGATCTCGAATTACGATCTACTTTAGATGATTTGAATAAGGACATGTTGGTATCTCAAAGTAACAATAGTAAATGGACTAATGTAAATTTGATATCTTTGGTATGACCATTATCTAATTGGAGAGTTACAACTCGAAACATTGTGAAGCTGCAATTGGTATAGTTATGGTCCGCGATTTGTTAGTATCTTGAATTTTGCACTATAGGCGTATATGATAGCATCCCCTTTTATGTATTTATCCGTTCTCTATTGATGTAAAAGGTCCATTTCTCTCCGGACATGATAGTCTGCGTGTTTGTGTGTGTGTAATCGTTAAACTCAATGAGATGATCTTATCTTTTGCTCCATTGGAATAATCTTACATGTACTTTAATGATGTAGTGGTTGTGTTGGTGAATGACACAGGTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAG</genome_strand>
        <mrna_strand>AAAATGGAGGAATTGGAGAAGAAGAATATTACTAGTATGAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462649" ref_strand="+" ref_description="SGN-E462649 [cPRO-12-E22]">
      <seq>ctttattaaaagggtgaattttttttttttttggtagtgagattggaaaaaaatggaggaattggagaagaagaatattactagtattaaggaagaagaagcagaagaagaaattgataatagttttgttcctgtttatcactcttttgcttctaaaaattatcattctcatcttgtttctgatgattatttgtcgattttagcatccaaagattatgattttcttctttcgcccaccggagctcaggtgaaagtttcggaacttgagggcaaagttgttggcctttacttttcagctaactggtattcaccatgtacgaagtttacaaacctgctagtcaatgtgtaccaacagcttaaggaattcagcaatatcaatctcggtttcgaaattgtatttatttcgtccgatgaaaacttaaatgccttcaatacttataggtcatcaatgccttggcttgcaattccattctctgatttggaaacaaggagggcccttacccaaaagtttgatgtcgaaggtatcccttgtatgataattctacaacctaacgataacaaattagacgctgcagttattaaagatggagttgaactggtgtatcgatatggagtgcaagcttttccgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="64551" stop="62492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64251" g_stop="64051" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="247" r_length="201" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64050" i_stop="63177" i_length="874">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63176" g_stop="62792" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="632" r_length="385" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="32" polyA_stop="18"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E462649" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64251" e_stop="64051"/>
          <exon e_start="63176" e_stop="62792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATGGAGGAATTGGAGAAGAAGAATATTACTAGTATGAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAGGTATGATTTGCGTTTTCGTTGTTGAAATAAACTATTAACTGAATACAGAGAAAACTGTAGCTTATATCCTATAACAGTAGCATTACGGCGAAAAATTAACTTACAGAGTTTGCGTATAATGTTGTTGTTGGTGATGAGATGTATACGATTCCTTTTCATTAAACTATAAGTCTCGGATTTGAGTTTCGAGTATGAGAAAGAATGTGATAGAGAGTGTTTAACGGGTGCCGATTCAAATTAATGGAGATCTATGGAAACTGAAGGGCTCAGATTCGGCTCTGATCCCTACTAGGAAAATAGAATTAATTATCATTTATCAATGGGAATTCAAGAGTATATGAAATGAAGTTTACATATTTGAAAATTACAAGTAGAAGCCTAATAGATACATTGATTTGAGGAAGTGAATATGTATTCTTTAAGTTATAATCTTTTTGTTCTAAGTAGCACTTGAGAAATCACGAACGTAGATCTCGAATTACGATCTACTTTAGATGATTTGAATAAGGACATGTTGGTATCTCAAAGTAACAATAGTAAATGGACTAATGTAAATTTGATATCTTTGGTATGACCATTATCTAATTGGAGAGTTACAACTCGAAACATTGTGAAGCTGCAATTGGTATAGTTATGGTCCGCGATTTGTTAGTATCTTGAATTTTGCACTATAGGCGTATATGATAGCATCCCCTTTTATGTATTTATCCGTTCTCTATTGATGTAAAAGGTCCATTTCTCTCCGGACATGATAGTCTGCGTGTTTGTGTGTGTGTAATCGTTAAACTCAATGAGATGATCTTATCTTTTGCTCCATTGGAATAATCTTACATGTACTTTAATGATGTAGTGGTTGTGTTGGTGAATGACACAGGTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTA</genome_strand>
        <mrna_strand>AAAAAAATGGAGGAATTGGAGAAGAAGAATATTACTAGTATTAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTTCCTGTTTATCACTCTTTTGCTTCTAAAAATTATCATTCTCATCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATTATGATTTTCTTCTTTCGCCCACCGGAGCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGCTAGTCAATGTGTACCAACAGCTTAAGGAATTCAGCAATATCAATCTCGGTTTCGAAATTGTATTTATTTCGTCCGATGAAAACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCATTCTCTGATTTGGAAACAAGGAGGGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTATGATAATTCTACAACCTAACGATAACAAATTAGACGCTGCAGTTATTAAAGATGGAGTTGAACTGGTGTATCGATATGGAGTGCAAGCTTTTCCGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247384" ref_strand="+" ref_description="SGN-E247384 [cLEF-46-M14]">
      <seq>aaaatggaggaattggagaagaagaatattactagtatgaaggaagaagaagcagaagaagaaattgataatagttttgtacctgtttatcactcttttgcttctaaaagttatcattctcaccttgtttctgatgattatttgtcgattttagcatccaaagatggcgaatttctcctttctcccaccggagctcaggtgaaagtttcggaacttgagggcaaagttgttggcctttacttttcagctaactggtattcaccatgtacgaagtttacaaacctgttagtcaatgtgtatcagcagcttaaggaatgcagcaatatcaatctcggtttcgaaatcgtctttgtttcgtctgatgaagacttaaatgccttcaatacttataggtcatcaatgccttggcttgcaattcctttctctgatttggaaacaaggagagcccttacccaaaagtttgatgtcgaaggtatcccttgtttgatagttctactacctaacgatgacaaattagacactgcagttattaaagacggagttgaactcgtgtatcgatatggagtccaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="64548" stop="62503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64248" g_stop="64051" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64050" i_stop="63177" i_length="874">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63176" g_stop="62803" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="572" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E247384" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64248" e_stop="64051"/>
          <exon e_start="63176" e_stop="62803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGAGGAATTGGAGAAGAAGAATATTACTAGTATGAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAGGTATGATTTGCGTTTTCGTTGTTGAAATAAACTATTAACTGAATACAGAGAAAACTGTAGCTTATATCCTATAACAGTAGCATTACGGCGAAAAATTAACTTACAGAGTTTGCGTATAATGTTGTTGTTGGTGATGAGATGTATACGATTCCTTTTCATTAAACTATAAGTCTCGGATTTGAGTTTCGAGTATGAGAAAGAATGTGATAGAGAGTGTTTAACGGGTGCCGATTCAAATTAATGGAGATCTATGGAAACTGAAGGGCTCAGATTCGGCTCTGATCCCTACTAGGAAAATAGAATTAATTATCATTTATCAATGGGAATTCAAGAGTATATGAAATGAAGTTTACATATTTGAAAATTACAAGTAGAAGCCTAATAGATACATTGATTTGAGGAAGTGAATATGTATTCTTTAAGTTATAATCTTTTTGTTCTAAGTAGCACTTGAGAAATCACGAACGTAGATCTCGAATTACGATCTACTTTAGATGATTTGAATAAGGACATGTTGGTATCTCAAAGTAACAATAGTAAATGGACTAATGTAAATTTGATATCTTTGGTATGACCATTATCTAATTGGAGAGTTACAACTCGAAACATTGTGAAGCTGCAATTGGTATAGTTATGGTCCGCGATTTGTTAGTATCTTGAATTTTGCACTATAGGCGTATATGATAGCATCCCCTTTTATGTATTTATCCGTTCTCTATTGATGTAAAAGGTCCATTTCTCTCCGGACATGATAGTCTGCGTGTTTGTGTGTGTGTAATCGTTAAACTCAATGAGATGATCTTATCTTTTGCTCCATTGGAATAATCTTACATGTACTTTAATGATGTAGTGGTTGTGTTGGTGAATGACACAGGTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGC</genome_strand>
        <mrna_strand>AAAATGGAGGAATTGGAGAAGAAGAATATTACTAGTATGAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260041" ref_strand="+" ref_description="SGN-E260041 [cLEG-52-G2]">
      <seq>cagcttaaggaatgcagcaatatcaatctcggtttcgaaatcgtctttgtttcgtctgatgaagacttaaatgccttcaatacttataggtcatcaatgccttggcttgcaattcctttctctgatttggaaacaaggagagcccttacccaaaagtttgatgtcgaaggtatcccttgtttgatagttctactacctaacgatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="63371" stop="62564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63071" g_stop="62864" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E260041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63071" e_stop="62864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACA</genome_strand>
        <mrna_strand>CAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358854" ref_strand="+" ref_description="SGN-E358854 [cLHT-24-N22]">
      <seq>gagaagaagaatattactagtatgaaggaagaagaagcagaagaagaaattgataatagttttgtacctgtttatcactcttttgcttctaaaaattatcattctcaccttgtttctgatgattatttgtcgattttagcatccaaagatggcgattttctcctttctcccaccggagctcaggtgaaagtttcggaacttgagggcaaagttgttggcctttacttttcagctaactggtattcaccatgtacgaagtttacaaacctgttagtcaatgtgtatcagcagcttaaggaatgcagcaatatcaatttcggtttcgaaatcgtctttgtttcttctgatgaagacttaaatgccttcaatacttataggtcatcaatgccttggcttgcaattcctttctctgatttggaaacaaggagagcccttacccaaaagtttgatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="64533" stop="62607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64233" g_stop="64051" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64050" i_stop="63177" i_length="874">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63176" g_stop="62907" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="453" r_length="270" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E358854" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64233" e_stop="64051"/>
          <exon e_start="63176" e_stop="62907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAAGAATATTACTAGTATGAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAGGTATGATTTGCGTTTTCGTTGTTGAAATAAACTATTAACTGAATACAGAGAAAACTGTAGCTTATATCCTATAACAGTAGCATTACGGCGAAAAATTAACTTACAGAGTTTGCGTATAATGTTGTTGTTGGTGATGAGATGTATACGATTCCTTTTCATTAAACTATAAGTCTCGGATTTGAGTTTCGAGTATGAGAAAGAATGTGATAGAGAGTGTTTAACGGGTGCCGATTCAAATTAATGGAGATCTATGGAAACTGAAGGGCTCAGATTCGGCTCTGATCCCTACTAGGAAAATAGAATTAATTATCATTTATCAATGGGAATTCAAGAGTATATGAAATGAAGTTTACATATTTGAAAATTACAAGTAGAAGCCTAATAGATACATTGATTTGAGGAAGTGAATATGTATTCTTTAAGTTATAATCTTTTTGTTCTAAGTAGCACTTGAGAAATCACGAACGTAGATCTCGAATTACGATCTACTTTAGATGATTTGAATAAGGACATGTTGGTATCTCAAAGTAACAATAGTAAATGGACTAATGTAAATTTGATATCTTTGGTATGACCATTATCTAATTGGAGAGTTACAACTCGAAACATTGTGAAGCTGCAATTGGTATAGTTATGGTCCGCGATTTGTTAGTATCTTGAATTTTGCACTATAGGCGTATATGATAGCATCCCCTTTTATGTATTTATCCGTTCTCTATTGATGTAAAAGGTCCATTTCTCTCCGGACATGATAGTCTGCGTGTTTGTGTGTGTGTAATCGTTAAACTCAATGAGATGATCTTATCTTTTGCTCCATTGGAATAATCTTACATGTACTTTAATGATGTAGTGGTTGTGTTGGTGAATGACACAGGTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTC</genome_strand>
        <mrna_strand>GAGAAGAAGAATATTACTAGTATGAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAATTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGATTTTCTCCTTTCTCCCACCGGAGCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATTTCGGTTTCGAAATCGTCTTTGTTTCTTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543393" ref_strand="+" ref_description="SGN-E543393 [TUS-65-C24]">
      <seq>gaaaaaagaaatcgaaattctaggaactgtacttgattcaaaattaagctatttctcataacaacatccaccaccccagattcagaattaaacgaagaaaaaaaaaattcaacaccaatcatatcaaactactcctataatctatcgaacattaataaaaataaagtttgaaataattgtaattaggaatatcttcaacatgggttactttcaggtggattgaagaactccggctccagtttagttctacaaactggacaaatcggattttttgaaagccaagtatcagcacattcaaggtgaaatccatggttacaacccggaacaactcgagcaatttgctcattctcaatttcatccaaacacaccgcacaatcgttacccattaacaattcattccctgtaattttcggtagtttgtccaattgagcagcagaaagacccaattcctgattcgttttctgactatggtaattttcagcgccggggccggcagattggtaagcagcggcgtaccagagtaaacagatgtagactaagaaaacagcgctcattccaacacagggaagaaacagagcgagaaaaacagagacaagcattgtttaattttgaaaaatgaccaaaaataaatttatgtttcacggcgggtggcggaagtggtggcgcccganaagaagagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="73726" stop="75008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74026" g_stop="74708" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E543393" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74026" e_stop="74708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAGAAATCGAAATTCTAGGAACTGTACTTGATTCAAAATTAAGCTATTTCTCATAACAACATCCACCACCCCAGATTCAGAATTAAACGAAGAAAAAAAAAATTCAACACCAATCATATCAAACTACTCCTATAATCTATCGAACATTAATAAAAATAAAGTTTGAAATAATTGTAATTAGGAATATCTTCAACATGGGTTACTTTCAGGTGGATTGAAGAACTCCGGCTCCAGTTTAGTTCTACAAACTGGACAAATCGGATTTTTTGAAAGCCAAGTATCAGCACATTCAAGGTGAAATCCATGGTTACAACCCGGAACAACTCGAGCAATTTGCTCATTCTCAATTTCATCCAAACACACCGCACAATCGTTACCCATTAACAATTCATTCCCTGTAATTTTCGGTAGTTTGTCCAATTGAGCAGCAGAAAGACCCAATTCCTGATTCGTTTTCTGACTATGGTAATTTTCAGCGCCGGGGCCGGCAGATTGGTAAGCAGCGGCGTACCAGAGTAAACAGATGTAGACTAAGAAAACAGCGCTCATTCCAACACAGGGAAGAAACAGAGCGAGAAAAACAGAGACAAGCATTGTTTAATTTTGAAAAATGACCAAAAATAAATTTATGTTTCACGGCGGGTGGCGGAGGTGGTGGCGCCGGAGAAGAAGAGAAAG</genome_strand>
        <mrna_strand>GAAAAAAGAAATCGAAATTCTAGGAACTGTACTTGATTCAAAATTAAGCTATTTCTCATAACAACATCCACCACCCCAGATTCAGAATTAAACGAAGAAAAAAAAAATTCAACACCAATCATATCAAACTACTCCTATAATCTATCGAACATTAATAAAAATAAAGTTTGAAATAATTGTAATTAGGAATATCTTCAACATGGGTTACTTTCAGGTGGATTGAAGAACTCCGGCTCCAGTTTAGTTCTACAAACTGGACAAATCGGATTTTTTGAAAGCCAAGTATCAGCACATTCAAGGTGAAATCCATGGTTACAACCCGGAACAACTCGAGCAATTTGCTCATTCTCAATTTCATCCAAACACACCGCACAATCGTTACCCATTAACAATTCATTCCCTGTAATTTTCGGTAGTTTGTCCAATTGAGCAGCAGAAAGACCCAATTCCTGATTCGTTTTCTGACTATGGTAATTTTCAGCGCCGGGGCCGGCAGATTGGTAAGCAGCGGCGTACCAGAGTAAACAGATGTAGACTAAGAAAACAGCGCTCATTCCAACACAGGGAAGAAACAGAGCGAGAAAAACAGAGACAAGCATTGTTTAATTTTGAAAAATGACCAAAAATAAATTTATGTTTCACGGCGGGTGGCGGAAGTGGTGGCGCCCGANAAGAAGAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304042" ref_strand="+" ref_description="SGN-E304042 [cLEX-6-I23]">
      <seq>aaaaaagaaatcgaaattctaggaactgtacttgattcaaaattaagctatttctcataacaacatccaccaccccagattcagaattaaacgaagaaaaaaaaaattcaacaccaatcatatcaaactactcctataatctatcgaacattaataaaaataaagtttgaaataattgtaattaggaatatcttcaacatgggttactttcaggtggattgaagaactccggctccagtttagttctacaaactggacaaatcggattttttgaaagccaagtatcagcacattcaaggtgaaatccatggttacaacccggaacaactcgagcaatttgctcattctcaatttcatccaaacacaccgcacaatcgttacccattaacaattcattccctgtaattttcggtagtttgtccaattgagcagcagaaagacccaattcctgattcgttttctgactatggtaattttcagcgccggggccggcagattggtaagcagcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="73727" stop="74836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74027" g_stop="74536" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E304042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74027" e_stop="74536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAAATCGAAATTCTAGGAACTGTACTTGATTCAAAATTAAGCTATTTCTCATAACAACATCCACCACCCCAGATTCAGAATTAAACGAAGAAAAAAAAAATTCAACACCAATCATATCAAACTACTCCTATAATCTATCGAACATTAATAAAAATAAAGTTTGAAATAATTGTAATTAGGAATATCTTCAACATGGGTTACTTTCAGGTGGATTGAAGAACTCCGGCTCCAGTTTAGTTCTACAAACTGGACAAATCGGATTTTTTGAAAGCCAAGTATCAGCACATTCAAGGTGAAATCCATGGTTACAACCCGGAACAACTCGAGCAATTTGCTCATTCTCAATTTCATCCAAACACACCGCACAATCGTTACCCATTAACAATTCATTCCCTGTAATTTTCGGTAGTTTGTCCAATTGAGCAGCAGAAAGACCCAATTCCTGATTCGTTTTCTGACTATGGTAATTTTCAGCGCCGGGGCCGGCAGATTGGTAAGCAGCGG</genome_strand>
        <mrna_strand>AAAAAAGAAATCGAAATTCTAGGAACTGTACTTGATTCAAAATTAAGCTATTTCTCATAACAACATCCACCACCCCAGATTCAGAATTAAACGAAGAAAAAAAAAATTCAACACCAATCATATCAAACTACTCCTATAATCTATCGAACATTAATAAAAATAAAGTTTGAAATAATTGTAATTAGGAATATCTTCAACATGGGTTACTTTCAGGTGGATTGAAGAACTCCGGCTCCAGTTTAGTTCTACAAACTGGACAAATCGGATTTTTTGAAAGCCAAGTATCAGCACATTCAAGGTGAAATCCATGGTTACAACCCGGAACAACTCGAGCAATTTGCTCATTCTCAATTTCATCCAAACACACCGCACAATCGTTACCCATTAACAATTCATTCCCTGTAATTTTCGGTAGTTTGTCCAATTGAGCAGCAGAAAGACCCAATTCCTGATTCGTTTTCTGACTATGGTAATTTTCAGCGCCGGGGCCGGCAGATTGGTAAGCAGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723303" ref_strand="+" ref_description="SGN-E723303 [FC20AD05]">
      <seq>gctctgcagcatggtgtgccaattactcaattttttaattctttctcttcttctccggcgccaccacctccgccacccgccgtgaaacataaatttatttttggtcatttttcaaaattaaacaatgcttgtctctgtttttctcgctctgtttcttccctgtgttggaatgagcgctgttttcttagtctacatctgtttactctggtacgccgctgcttaccaatctgccggccccggcgctgaaaattaccatagtcagaaaacgaatcaggaattgggtctttctgctgctcaattggacaaactaccgaaaattacagggaatgaattgttaatgggtaacgattgtgcggtgtgtttggatgaaattgagaatgagcaaattgctcgagttgttccgggttgtaaccatggatttcaccttgaatgtgctgatacttggctttcaaaaaatccgatttgtccagtttgtagaactaaactggagccggagttcttcaatccacctgaaagtaacccatgttgaagatattcctaattacaattatttcaaactttatttttattaatgttcgatagattataggagtagtttgatatgattggtgttgaattttttttttcttcgtttaattctgaatctggggtggtggatgttgttatgagaaatagcttaattttgaatcaagtacagttcctagaaaaaaaaannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="75047" stop="73743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74748" g_stop="74044" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="716" polyA_stop="765"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E723303" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74748" e_stop="74044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGCAGCATGGTGTGCCAATTACTCAATTTTTTAATTCTTTCTCTTCTTCTCCGGCGCCACCACCTCCGCCACCCGCCGTGAAACATAAATTTATTTTTGGTCATTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCCTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCCGCTGCTTACCAATCTGCCGGCCCCGGCGCTGAAAATTACCATAGTCAGAAAACGAATCAGGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACAGGGAATGAATTGTTAATGGGTAACGATTGTGCGGTGTGTTTGGATGAAATTGAGAATGAGCAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCAAAAAATCCGATTTGTCCAGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGATATTCCTAATTACAATTATTTCAAACTTTATTTTTATTAATGTTCGATAGATTATAGGAGTAGTTTGATATGATTGGTGTTGAATTTTTTTTTTCTTCGTTTAATTCTGAATCTGGGGTGGTGGATGTTGTTATGAGAAATAGCTTAATTTTGAATCAAGTACAGTTCCTAGA</genome_strand>
        <mrna_strand>GCTCTGCAGCATGGTGTGCCAATTACTCAATTTTTTAATTCTTTCTCTTCTTCTCCGGCGCCACCACCTCCGCCACCCGCCGTGAAACATAAATTTATTTTTGGTCATTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCCTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCCGCTGCTTACCAATCTGCCGGCCCCGGCGCTGAAAATTACCATAGTCAGAAAACGAATCAGGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACAGGGAATGAATTGTTAATGGGTAACGATTGTGCGGTGTGTTTGGATGAAATTGAGAATGAGCAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCAAAAAATCCGATTTGTCCAGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGATATTCCTAATTACAATTATTTCAAACTTTATTTTTATTAATGTTCGATAGATTATAGGAGTAGTTTGATATGATTGGTGTTGAATTTTTTTTTTCTTCGTTTAATTCTGAATCTGGGGTGGTGGATGTTGTTATGAGAAATAGCTTAATTTTGAATCAAGTACAGTTCCTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430127" ref_strand="+" ref_description="SGN-E430127 [STM-53-M17]">
      <seq>ttttttttttgattaattaagctatttctcataacaacatccaccacccagattcagaattaaacggaaaaaaaaatattaatacgattcaacaccaattatatcaaactactcctataatctatcaagcattaataaaaataaagttgaaataattttaattatgaatttcttcaacatgggttactttcaggtggattgaagaactccggctccagtttagttctacaaaccggacaaatcggatttttcgaaagccaagtatcagcacattcaaggtgaaatccatggttacaacccggaacaactcgagcaatttgctcgttctcaatttcatccaaacacaccgcacaatcattacccattaccaattcgttcccagtaattttcggtagtttgtccaattgagcagcagaaagacccaattcctgattcgtcttttcattatggtaattttcagcgccagggccggcagactggtaagcagcagcgtaccagagtaaacagatgtagactaagaaaacagcgctcattccaacacaaggaagaaacagagcgagaaaaacagagacnagcattgtttaattttgaaaactgactaaaaatatatatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="73767" stop="74958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74053" g_stop="74662" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-E430127" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74053" e_stop="74662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACTTGATTCAAAATTAAGCTATTTCTCATAACAACATCCACCACCCCAGATTCAGAATTAAAC-G-AAGAAAAA-A--AA-A--ATTCAACACCAATCATATCAAACTACTCCTATAATCTATCGAACATTAATAAAAATAAAGTTTGAAATAATTGTAATTAGGAATATCTTCAACATGGGTTACTTTCAGGTGGATTGAAGAACTCCGGCTCCAGTTTAGTTCTACAAACTGGACAAATCGGATTTTTTGAAAGCCAAGTATCAGCACATTCAAGGTGAAATCCATGGTTACAACCCGGAACAACTCGAGCAATTTGCTCATTCTCAATTTCATCCAAACACACCGCACAATCGTTACCCATTAACAATTCATTCCCTGTAATTTTCGGTAGTTTGTCCAATTGAGCAGCAGAAAGACCCAATTCCTGATTCGTTTTCTGACTATGGTAATTTTCAGCGCCGGGGCCGGCAGATTGGTAAGCAGCGGCGTACCAGAGTAAACAGATGTAGACTAAGAAAACAGCGCTCATTCCAACACAGGGAAGAAACAGAGCGAGAAAAACAGAGACAAGCATTGTTTAATTTTGAAAAATGACCAAAAATAAATTTATGT</genome_strand>
        <mrna_strand>TTTTTTTTTTGATTAATTAAGCTATTTCTCATAACAACATCCACCA-CCCAGATTCAGAATTAAACGGAAAAAAAAATATTAATACGATTCAACACCAATTATATCAAACTACTCCTATAATCTATCAAGCATTAATAAAAATAAAG-TTGAAATAATTTTAATTATGAATTTCTTCAACATGGGTTACTTTCAGGTGGATTGAAGAACTCCGGCTCCAGTTTAGTTCTACAAACCGGACAAATCGGATTTTTCGAAAGCCAAGTATCAGCACATTCAAGGTGAAATCCATGGTTACAACCCGGAACAACTCGAGCAATTTGCTCGTTCTCAATTTCATCCAAACACACCGCACAATCATTACCCATTACCAATTCGTTCCCAGTAATTTTCGGTAGTTTGTCCAATTGAGCAGCAGAAAGACCCAATTCCTGATTCGTCTTTTCATTATGGTAATTTTCAGCGCCAGGGCCGGCAGACTGGTAAGCAGCAGCGTACCAGAGTAAACAGATGTAGACTAAGAAAACAGCGCTCATTCCAACACAAGGAAGAAACAGAGCGAGAAAAACAGAGACNAGCATTGTTTAATTTTGAAAACTGACTAAAAATATATATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461266" ref_strand="+" ref_description="SGN-E461266 [cPRO-7-H18]">
      <seq>gtgtgccaattactcaattctttaattctttctcttcatctccggcgccaccacctccgccacccgccgtaaaatatatatttttagtcagttttcaaaattaaacaatgcttgtctctgtttttctcgctctgtttcttccttgtgatggaatgagcgctgttttcttagtctacatctgtttactctggtacgctgctgcttaccagtctgccggccctggcgctgaaaattaccataatgaaaagacgaatcaggaattgggtctttctgctgctcaattggacaaactaccgaaaattactgggaacgaattggtaatgggtaatgattgtgcggtgtgtttggatgaaattgagaacgagcaaattgctcgagttgttccgggttgtaaccatggatttcaccttgaatgtgctgatacttggctttcaaaaaatccgatttgtccggtttgtagaactaaactggagccggagttcttcaatccacctgaaagtaacccatgttgaagaaattcataattaaaattatttcaactttatttttattaatgcttgatagattataggagtagtttgatataattggtgttgaatcatattaatatttttttttccgtttaattctgaatctgggtggtggatgttgctatgagacatagcttaattgaatctaaaatgaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="75035" stop="73767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74735" g_stop="74058" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E461266" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74735" e_stop="74058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGCCAATTACTCAATTTTTTAATTCTTTCTCTTCTTCTCCGGCGCCACCACCTCCGCCACCCGCCGTGAAACATAAATTTATTTTTGGTCATTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCCTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCCGCTGCTTACCAATCTGCCGGCCCCGGCGCTGAAAATTACCATAGTCAGAAAACGAATCAGGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACAGGGAATGAATTGTTAATGGGTAACGATTGTGCGGTGTGTTTGGATGAAATTGAGAATGAGCAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCAAAAAATCCGATTTGTCCAGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGATATTCCTAATTACAATTATTTCAAACTTTATTTTTATTAATGTTCGATAGATTATAGGAGTAGTTTGATATGATTGGTGTTGAAT--T-TT--T--TTTTTCTT-CGTTTAATTCTGAATCTGGGGTGGTGGATGTTGTTATGAGAAATAGCTTAATTTTGAATCAA</genome_strand>
        <mrna_strand>GTGTGCCAATTACTCAATTCTTTAATTCTTTCTCTTCATCTCCGGCGCCACCACCTCCGCCACCCGCCGT-AAA-AT--ATATATTTTTAGTCAGTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCTTGTGATGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCTGCTGCTTACCAGTCTGCCGGCCCTGGCGCTGAAAATTACCATAATGAAAAGACGAATCAGGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACTGGGAACGAATTGGTAATGGGTAATGATTGTGCGGTGTGTTTGGATGAAATTGAGAACGAGCAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCAAAAAATCCGATTTGTCCGGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGAAATTCATAATTAAAATTATTTC-AACTTTATTTTTATTAATGCTTGATAGATTATAGGAGTAGTTTGATATAATTGGTGTTGAATCATATTAATATTTTTTTTTCCGTTTAATTCTGAATCT-GGGTGGTGGATGTTGCTATGAGACATAGCTTAA--TTGAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461192" ref_strand="+" ref_description="SGN-E461192 [cPRO-7-H17]">
      <seq>gtgtgccaattactcaattctttaattctttctcttcatctccggcgccaccacctccgccacccgccgtaaaatatatatttttagtcagttttcaaaattaaacaatgcttgtctctgtttttctcgctctgtttcttccttgtgttggaatgagcgctgttttcttagtctacatctgtttactctggtacgctgctgcttaccagtctgccggccctggcgctgaaaattaccataatgaaaagacgaatcaggaattgggtctttctgctgctcaattggacaaactaccgaaaattactgggaacgaattggtaatgggtaatgattgtgcggtgtgtttggatgaaattgagaacgagcaaattgctcgagttgttccgggttgtaaccatggatttcaccttgaatgtgctgatacttggctttcgaaaaatccgatttgtccggtttgtagaactaaactggagccggagttcttcaatccacctgaaagtaacccatgttgaagaaattcataattaaaattatttcaactttatttttattaatgcttgatagattataggagtagtttgatataattggtgttgaatcgtattaatatttttttttccgtttaattctgaatctgggtggtggatgttgttatgagaaatagcttaattgaatcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="75035" stop="73767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74735" g_stop="74058" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E461192" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74735" e_stop="74058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGCCAATTACTCAATTTTTTAATTCTTTCTCTTCTTCTCCGGCGCCACCACCTCCGCCACCCGCCGTGAAACATAAATTTATTTTTGGTCATTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCCTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCCGCTGCTTACCAATCTGCCGGCCCCGGCGCTGAAAATTACCATAGTCAGAAAACGAATCAGGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACAGGGAATGAATTGTTAATGGGTAACGATTGTGCGGTGTGTTTGGATGAAATTGAGAATGAGCAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCAAAAAATCCGATTTGTCCAGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGATATTCCTAATTACAATTATTTCAAACTTTATTTTTATTAATGTTCGATAGATTATAGGAGTAGTTTGATATGATTGGTGTTGAAT--T-T---T-TTTTTTCTT-CGTTTAATTCTGAATCTGGGGTGGTGGATGTTGTTATGAGAAATAGCTTAATTTTGAATCAA</genome_strand>
        <mrna_strand>GTGTGCCAATTACTCAATTCTTTAATTCTTTCTCTTCATCTCCGGCGCCACCACCTCCGCCACCCGCCGT-AAA-AT--ATATATTTTTAGTCAGTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCTTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCTGCTGCTTACCAGTCTGCCGGCCCTGGCGCTGAAAATTACCATAATGAAAAGACGAATCAGGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACTGGGAACGAATTGGTAATGGGTAATGATTGTGCGGTGTGTTTGGATGAAATTGAGAACGAGCAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCGAAAAATCCGATTTGTCCGGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGAAATTCATAATTAAAATTATTTC-AACTTTATTTTTATTAATGCTTGATAGATTATAGGAGTAGTTTGATATAATTGGTGTTGAATCGTATTAATATTTTTTTTTCCGTTTAATTCTGAATCT-GGGTGGTGGATGTTGTTATGAGAAATAGCTTAA--TTGAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624021" ref_strand="+" ref_description="SGN-E624021 [89167]">
      <seq>caattactcaattctttaattctttctcttcatctccggcgccaccacctccgccacccgccgtaaaatatatatttttagtcagttttcaaaattaaacaatgcttgtctctgtttttctcgctctgtttcttccttgtgttggaatgagcgctgttttcttagtctacatctgtttactctggtacgctgctgcttaccagtctgccggccctggcgctgaaaattaccataatgaaaagacgaatcaggaattgggtctttctgctgctcaattggacaaactaccgaaaattactgggaacgaattggtaatgggtaatgattgtgcggtgtgtttggatgaaattgagaacgagcaaattgctcgagttgttccgggttgtaaccatggatttcaccttgaatgtgctgatacttggctttcgaaaaatccgatttgtccggtttgtagaactaaactggagccggagttcttcaatccacctgaaagtaacccatgttgaagaaattcataattaaaattatttcaactttatttttattaatgcttgatagattataggagtagtttgatataattggtgttgaatcgtattaatatttttttttccgtttaattctgaatctgggtggtggatgttgttatgagaaatagcttaattgaatcaagtacagtttcttgaaaaaaacaccaatgacagggtagttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="75029" stop="73743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74729" g_stop="74058" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E624021" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74729" e_stop="74058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTACTCAATTTTTTAATTCTTTCTCTTCTTCTCCGGCGCCACCACCTCCGCCACCCGCCGTGAAACATAAATTTATTTTTGGTCATTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCCTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCCGCTGCTTACCAATCTGCCGGCCCCGGCGCTGAAAATTACCATAGTCAGAAAACGAATCAGGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACAGGGAATGAATTGTTAATGGGTAACGATTGTGCGGTGTGTTTGGATGAAATTGAGAATGAGCAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCAAAAAATCCGATTTGTCCAGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGATATTCCTAATTACAATTATTTCAAACTTTATTTTTATTAATGTTCGATAGATTATAGGAGTAGTTTGATATGATTGGTGTTGAA---T-TT--T-TTTTTTCTT-CGTTTAATTCTGAATCTGGGGTGGTGGATGTTGTTATGAGAAATAGCTTAATTTTGAATCAA</genome_strand>
        <mrna_strand>CAATTACTCAATTCTTTAATTCTTTCTCTTCATCTCCGGCGCCACCACCTCCGCCACCCGCCGT-AAA-AT--ATATATTTTTAGTCAGTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCTTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCTGCTGCTTACCAGTCTGCCGGCCCTGGCGCTGAAAATTACCATAATGAAAAGACGAATCAGGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACTGGGAACGAATTGGTAATGGGTAATGATTGTGCGGTGTGTTTGGATGAAATTGAGAACGAGCAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCGAAAAATCCGATTTGTCCGGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGAAATTCATAATTAAAATTATTTC-AACTTTATTTTTATTAATGCTTGATAGATTATAGGAGTAGTTTGATATAATTGGTGTTGAATCGTATTAATATTTTTTTTTCCGTTTAATTCTGAATCT-GGGTGGTGGATGTTGTTATGAGAAATAGCTTAA--TTGAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303893" ref_strand="+" ref_description="SGN-E303893 [cLEX-4-O9]">
      <seq>aattactcaattttttaattatttctcttcttctccggcgccaccacctccgtcacccgccgagaaacataaatttatttttggtcatttttcaaaattaaacaatgcttgcctctgtttttctcgctctgtttcttccctgtgttggaatgagcgctgttttcttagtctacatctgtttactctggtacgccgctgcttaccaatctgccggccccggcgctgaaaattaccattgtcagaaaacgaatcacgaattgggtctttctgctgctcaattggacaaactaccgaaaattacagggaatgaattgttaatgggtaacgattgtgcggtgtgtttggatgaaattgacaatgagcaaattgctcgagtcggtccgggttgtaaccatggatttcaccttgaatgtgctgatacttggctctcaaaaaatccgatttgtacagtttgtagaactaaactggagccggagttcttcaatccacctgaaagtaacccatgttgaagatattcctaattacaattatttcaaactttatttttattaatgttcgatagattataggagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="75028" stop="73855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74728" g_stop="74155" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E303893" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74728" e_stop="74155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACTCAATTTTTTAATTCTTTCTCTTCTTCTCCGGCGCCACCACCTCCGCCACCCGCCGTGAAACATAAATTTATTTTTGGTCATTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCCTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCCGCTGCTTACCAATCTGCCGGCCCCGGCGCTGAAAATTACCATAGTCAGAAAACGAATCAGGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACAGGGAATGAATTGTTAATGGGTAACGATTGTGCGGTGTGTTTGGATGAAATTGAGAATGAGCAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCAAAAAATCCGATTTGTCCAGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGATATTCCTAATTACAATTATTTCAAACTTTATTTTTATTAATGTTCGATAGATTATAGGAGTA</genome_strand>
        <mrna_strand>AATTACTCAATTTTTTAATTATTTCTCTTCTTCTCCGGCGCCACCACCTCCGTCACCCGCCGAGAAACATAAATTTATTTTTGGTCATTTTTCAAAATTAAACAATGCTTGCCTCTGTTTTTCTCGCTCTGTTTCTTCCCTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCCGCTGCTTACCAATCTGCCGGCCCCGGCGCTGAAAATTACCATTGTCAGAAAACGAATCACGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACAGGGAATGAATTGTTAATGGGTAACGATTGTGCGGTGTGTTTGGATGAAATTGACAATGAGCAAATTGCTCGAGTCGGTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTCTCAAAAAATCCGATTTGTACAGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGATATTCCTAATTACAATTATTTCAAACTTTATTTTTATTAATGTTCGATAGATTATAGGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430126" ref_strand="+" ref_description="SGN-E430126 [STM-53-M17]">
      <seq>gtgtgccaattactcaattctttaattctttctcttcatcttcggcgccaccacctccgccacccgccgtaaaatatatatttttagtcagttttcaaaattaaacaatgcttgtctctgtttttctcgctctgtttcttccttgtgttggaatgagcgctgttttcttagtctacatctgtttactctggtacgctgctgcttaccagtctgccggccctggcgctgaaaattaccataatgaaaagacgaatcaggaattgggtctttctgctgctcaattggacaaactaccgaaaattactgggaacgaattggtaatgggtaatgattgtgcggtgtgtttggatgaaattgagaacgagcaaattgctcgagttgttccgggttgtaaccatggatttcaccttgaatgtgctgatacttggctttcgaaaaatccgatttgtccggtttgtagaactaaactggagccggagttcttcaatccacctgaaagtaacccatgttgaagaaattcataattaaaattatttcaactttatttttattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="75035" stop="73876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74735" g_stop="74176" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E430126" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74735" e_stop="74176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGCCAATTACTCAATTTTTTAATTCTTTCTCTTCTTCTCCGGCGCCACCACCTCCGCCACCCGCCGTGAAACATAAATTTATTTTTGGTCATTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCCTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCCGCTGCTTACCAATCTGCCGGCCCCGGCGCTGAAAATTACCATAGTCAGAAAACGAATCAGGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACAGGGAATGAATTGTTAATGGGTAACGATTGTGCGGTGTGTTTGGATGAAATTGAGAATGAGCAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCAAAAAATCCGATTTGTCCAGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGATATTCCTAATTACAATTATTTCAAACTTTATTTTTATTAAT</genome_strand>
        <mrna_strand>GTGTGCCAATTACTCAATTCTTTAATTCTTTCTCTTCATCTTCGGCGCCACCACCTCCGCCACCCGCCGT-AAA-AT--ATATATTTTTAGTCAGTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCTTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCTGCTGCTTACCAGTCTGCCGGCCCTGGCGCTGAAAATTACCATAATGAAAAGACGAATCAGGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACTGGGAACGAATTGGTAATGGGTAATGATTGTGCGGTGTGTTTGGATGAAATTGAGAACGAGCAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCGAAAAATCCGATTTGTCCGGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGAAATTCATAATTAAAATTATTTC-AACTTTATTTTTATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573581" ref_strand="+" ref_description="SGN-E573581 [32914]">
      <seq>ctttaattctttctcttcttctccggcgccacacctccgcacccgccgtaaaatatatatttttagtcatttttcaaaattaaacaatgcttgtctctgtttttctcgctctgtttcttccttgtgttggaatgagcgctgttttcttagtctacatctgtttactctggtacgctgctgcttgccagtctgccggtcctggcgccgaaaattaccataatgaaaagacgaatcaggaactaggtctttctgctgctcaattggacaaactaccgaaaattactgggaaggaattggtaatgggtaacgattgtgcggtgtgtttggatgaaattgagaacgaacaaattgctcgagttgttccgggttgtaaccatggatttcaccttgaatgtgctgatacttggctttcgaaaaatccgatttgtccggtttgtagaactaaactggagccggagttcttcaatccacctgaaagtaacccatgttgaaaaattcataatttaaaattatttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="75015" stop="73893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74716" g_stop="74193" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-E573581" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74716" e_stop="74193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATTCTTTCTCTTCTTCTCCGGCGCCACCACCTCCGCCACCCGCCGTGAAACATAAATTTATTTTTGGTCATTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCCTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCCGCTGCTTACCAATCTGCCGGCCCCGGCGCTGAAAATTACCATAGTCAGAAAACGAATCAGGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACAGGGAATGAATTGTTAATGGGTAACGATTGTGCGGTGTGTTTGGATGAAATTGAGAATGAGCAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCAAAAAATCCGATTTGTCCAGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGATATTCCTAA-TTACAATTATTTCAA</genome_strand>
        <mrna_strand>CTTTAATTCTTTCTCTTCTTCTCCGGCGCCA-CACCTCCG-CACCCGCCGT-AAA-AT--ATATATTTTTAGTCATTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCTTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCTGCTGCTTGCCAGTCTGCCGGTCCTGGCGCCGAAAATTACCATAATGAAAAGACGAATCAGGAACTAGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACTGGGAAGGAATTGGTAATGGGTAACGATTGTGCGGTGTGTTTGGATGAAATTGAGAACGAACAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCGAAAAATCCGATTTGTCCGGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAA-AAATTCATAATTTAAAATTATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>380</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2388" PGL_stop="3537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2388" e_stop="3264"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2388" e_stop="3264" e_length="877"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2388" stop="2820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2392" stop="3176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2392" stop="3163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2392" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2393" stop="3139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2393" stop="2938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2393" stop="2561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2394" stop="3045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2394" stop="2829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2399" stop="3137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2401" stop="3170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2402" stop="3083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2403" stop="2681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2406" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2407" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2407" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2410" stop="3077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2413" stop="2826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2421" stop="3091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2433" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2434" stop="3158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2435" stop="3248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2439" stop="3176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2440" stop="3009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2440" stop="2824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2445" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2445" stop="3006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2445" stop="2953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2447" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2449" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539202" strand="+"/>
          </PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2497" stop="3157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2503" stop="3148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2507" stop="2942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2513" stop="3065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2520" stop="3206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2524" stop="3057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2525" stop="2973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2534" stop="2973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2553" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2559" stop="3191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2573" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2581" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2583" stop="3216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2584" stop="3197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2597" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2599" stop="3117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412976" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2611" stop="3067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2624" stop="3135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2630" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2631" stop="3124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2638" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281685" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2641" stop="3213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2651" stop="3174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2659" stop="3196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2661" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2672" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2697" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2710" stop="3180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2719" stop="3258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2720" stop="3264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2725" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2726" stop="3150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2734" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412101" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2752" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2762" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2766" stop="3071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2767" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2784" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2796" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2808" stop="3216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2812" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2816" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2824" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2824" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2824" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2824" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2824" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2825" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2828" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401849" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2829" stop="3216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2831" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2836" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2838" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2840" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2842" stop="3196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2856" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2857" stop="3150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2858" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2858" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2870" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2879" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2884" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278415" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2900" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2900" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2900" stop="3168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2901" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2901" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2903" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2912" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3019" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297510" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACCTCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATGGTAAAATAACATACCCGTTTCAGTTGCTTAAACTCTTCAAAAATGTTG</gDNA_template>
            <first_frame> Q  P  H  I  L  K  P  H  Q  L  L  L  P  F  S  *  F  Q  I  F  N  H  K  S  N  N  K  K  H  I  N  K  Q  W  P  L  L  P  L  L  L  L  L  F  H  L  S  L  A  L  R  L  V  L  H  H  L  P  E  L  A  P  V  H  P  L  R  W  Q  L  P  Q  L  P  D  *  L  *  R  R  L  *  K  M  S  V  L  W  L  L  P  P  L  L  A  R  C  L  L  A  M  P  W  H  L  K  C  C  L  V  V  M  M  G  V  *  L  L  F  L  G  T  S  A  L  V  L  V  R  K  L  H  S  R  T  M  Q  G  S  H  T  T  S  Y  L  M  K  M  K  S  Q  L  V  W  M  L  V  R  F  P  C  L  K  R  I  F  *  M  Q  Q  E  R  H  T  V  S  L  *  V  R  K  E  L  T  L  S  T  V  H  L  T  R  E  L  E  W  L  A  K  L  L  S  T  N  F  F  H  T  S  V  L  *  K  L  I  *  V  P  I  N  F  N  I  F  L  L  V  L  P  F  S  F  *  G  V  M  K  T  Q  E  I  K  V  A  Y  V  S  M  *  C  H  F  V  I  N  T  S  F  F  G  L  *  C  C  F  C  N  I  K  K  F  N  L  P  P  D  G  K  I  T  Y  P  F  Q  L  L  K  L  F  K  N  V  </first_frame>
            <second_frame>  N  L  T  Y  *  N  P  I  N  S  Y  S  P  F  L  D  S  K  F  S  I  T  K  A  T  T  R  S  I  L  I  N  N  G  H  C  Y  L  C  C  C  C  Y  S  I  F  H  W  P  *  G  W  C  F  I  I  F  Q  S  *  H  R  C  I  R  *  G  G  S  C  P  S  C  Q  I  D  C  E  G  V  F  E  R  C  R  C  C  G  C  C  H  R  C  *  R  D  A  C  *  Q  C  H  G  T  *  S  V  A  W  W  *  *  W  E  S  S  F  Y  S  W  E  L  Q  R  *  C  W  *  E  N  Y  I  Q  E  Q  C  R  V  P  T  Q  R  R  I  *  *  R  *  N  P  S  W  C  G  C  *  *  D  F  H  V  *  R  G  S  S  E  C  S  R  R  D  I  Q  C  H  F  E  *  E  R  N  L  H  F  L  L  C  T  S  P  G  S  W  N  G  W  Q  S  Y  C  Q  L  I  F  F  T  P  L  F  C  K  S  *  F  E  F  P  S  I  S  T  F  S  F  *  Y  C  P  S  L  F  E  V  *  *  K  L  R  K  L  K  L  H  M  Y  P  C  N  V  I  L  *  L  I  P  A  F  L  D  C  N  V  A  F  V  T  S  K  S  S  T  F  L  L  M  V  K  *  H  T  R  F  S  C  L  N  S  S  K  M  L </second_frame>
            <third_frame>   T  S  H  I  K  T  P  S  T  P  T  P  L  F  L  I  P  N  F  Q  S  Q  K  Q  Q  Q  E  A  Y  *  *  T  M  A  T  V  T  S  A  A  V  A  I  P  S  F  T  G  L  K  A  G  A  S  S  S  S  R  V  S  T  G  A  S  A  K  V  A  A  A  P  V  A  R  L  T  V  K  A  S  L  K  D  V  G  A  V  V  A  A  T  A  V  S  A  M  L  A  S  N  A  M  A  L  E  V  L  L  G  G  D  D  G  S  L  A  F  I  P  G  N  F  S  V  S  A  G  E  K  I  T  F  K  N  N  A  G  F  P  H  N  V  V  F  D  E  D  E  I  P  A  G  V  D  A  S  K  I  S  M  S  E  E  D  L  L  N  A  A  G  E  T  Y  S  V  T  L  S  E  K  G  T  Y  T  F  Y  C  A  P  H  Q  G  A  G  M  V  G  K  V  T  V  N  *  F  F  S  H  L  C  F  V  K  V  D  L  S  S  H  Q  F  Q  H  F  P  F  S  I  A  L  L  F  L  R  C  N  E  N  S  G  N  *  S  C  I  C  I  H  V  M  S  F  C  D  *  Y  Q  L  F  W  T  V  M  L  L  L  *  H  Q  K  V  Q  P  S  S  *  W  *  N  N  I  P  V  S  V  A  *  T  L  Q  K  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2483" stop="2998"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMATVTSAAVAIPSFTGLKAGASSSSRVSTGASAKVAAAPVARLTVKASLKDVGAVVAATAVSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2388" e_stop="3174"/>
            <exon e_start="3349" e_stop="3378"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2388" e_stop="3174" e_length="787"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3175" i_stop="3348" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="3349" e_stop="3378" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2388" stop="2820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2392" stop="3163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2392" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2393" stop="3139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2393" stop="2938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2393" stop="2561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2394" stop="3045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2394" stop="2829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2399" stop="3137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2401" stop="3170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2402" stop="3083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2403" stop="2681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2406" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2407" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2407" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2410" stop="3077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2413" stop="2826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2421" stop="3091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2433" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2434" stop="3158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2440" stop="3009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2440" stop="2824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2445" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2445" stop="3006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2445" stop="2953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2447" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2449" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2449" stop="2854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2450" stop="3065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2450" stop="2794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2451" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2451" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2451" stop="2784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2452" stop="3126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2452" stop="3055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2452" stop="2892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2453" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2453" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2453" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2453" stop="3117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2454" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2454" stop="3170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2455" stop="3174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2455" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2455" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2456" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2456" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2456" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2456" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2456" stop="2926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2457" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2458" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2458" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2458" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2458" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2459" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2459" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2459" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2459" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="3034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="3024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2461" stop="2808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2462" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2462" stop="3170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2462" stop="3151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2462" stop="3034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2462" stop="2971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2463" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2463" stop="2989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2463" stop="2854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2463" stop="2727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2465" stop="3155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2465" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2466" stop="3012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2466" stop="2989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2466" stop="2751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2466" stop="2712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="3163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="3119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="3064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="2974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="2955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="2955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="2929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="2860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="2856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2470" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2470" stop="3031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2472" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2472" stop="3011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2472" stop="2892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2473" stop="3104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2474" stop="3101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2474" stop="3019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2475" stop="3100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2476" stop="3024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2477" stop="2838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2480" stop="2982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2481" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2482" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2484" stop="3059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2484" stop="3021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2484" stop="3004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2484" stop="2757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2485" stop="2960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2485" stop="2958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2486" stop="2995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2488" stop="2973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2489" stop="3170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2493" stop="3150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2494" stop="3026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2495" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2495" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2495" stop="3143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2496" stop="3159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2496" stop="3158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2497" stop="3159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2497" stop="3157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2503" stop="3148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2507" stop="2942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2513" stop="3065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2524" stop="3057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2525" stop="2973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2534" stop="2973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2553" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2573" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2581" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2597" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2599" stop="3117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412976" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2611" stop="3067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2624" stop="3135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2630" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2631" stop="3124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2638" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281685" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2651" stop="3174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2661" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2672" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2697" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2725" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2726" stop="3150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2734" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412101" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2739" stop="3174"/>
              <exon start="3349" stop="3378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468261" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2752" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2762" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2766" stop="3071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2767" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2784" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2796" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2812" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2816" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2824" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2824" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2824" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2824" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2824" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2825" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2828" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401849" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2831" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2836" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2838" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2840" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2856" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2857" stop="3150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2858" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2858" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2870" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2879" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2884" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278415" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2900" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2900" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2900" stop="3168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2901" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2901" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2903" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2912" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3019" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297510" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACCTCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAAT : CAATGAAACTAAAGAATAAAAATATAATTC</gDNA_template>
            <first_frame> Q  P  H  I  L  K  P  H  Q  L  L  L  P  F  S  *  F  Q  I  F  N  H  K  S  N  N  K  K  H  I  N  K  Q  W  P  L  L  P  L  L  L  L  L  F  H  L  S  L  A  L  R  L  V  L  H  H  L  P  E  L  A  P  V  H  P  L  R  W  Q  L  P  Q  L  P  D  *  L  *  R  R  L  *  K  M  S  V  L  W  L  L  P  P  L  L  A  R  C  L  L  A  M  P  W  H  L  K  C  C  L  V  V  M  M  G  V  *  L  L  F  L  G  T  S  A  L  V  L  V  R  K  L  H  S  R  T  M  Q  G  S  H  T  T  S  Y  L  M  K  M  K  S  Q  L  V  W  M  L  V  R  F  P  C  L  K  R  I  F  *  M  Q  Q  E  R  H  T  V  S  L  *  V  R  K  E  L  T  L  S  T  V  H  L  T  R  E  L  E  W  L  A  K  L  L  S  T  N  F  F  H  T  S  V  L  *  K  L  I  *  V  P  I  N  F  N  I  F  L  L  V  L  P  F  S  F  *  G  V  M  K  T  Q  E  I  K  V  A  Y  V  S  M  *  C  H  F  V  I  N  T  S  F  F  G  L  *   : S  M  K  L  K  N  K  N  I  I  </first_frame>
            <second_frame>  N  L  T  Y  *  N  P  I  N  S  Y  S  P  F  L  D  S  K  F  S  I  T  K  A  T  T  R  S  I  L  I  N  N  G  H  C  Y  L  C  C  C  C  Y  S  I  F  H  W  P  *  G  W  C  F  I  I  F  Q  S  *  H  R  C  I  R  *  G  G  S  C  P  S  C  Q  I  D  C  E  G  V  F  E  R  C  R  C  C  G  C  C  H  R  C  *  R  D  A  C  *  Q  C  H  G  T  *  S  V  A  W  W  *  *  W  E  S  S  F  Y  S  W  E  L  Q  R  *  C  W  *  E  N  Y  I  Q  E  Q  C  R  V  P  T  Q  R  R  I  *  *  R  *  N  P  S  W  C  G  C  *  *  D  F  H  V  *  R  G  S  S  E  C  S  R  R  D  I  Q  C  H  F  E  *  E  R  N  L  H  F  L  L  C  T  S  P  G  S  W  N  G  W  Q  S  Y  C  Q  L  I  F  F  T  P  L  F  C  K  S  *  F  E  F  P  S  I  S  T  F  S  F  *  Y  C  P  S  L  F  E  V  *  *  K  L  R  K  L  K  L  H  M  Y  P  C  N  V  I  L  *  L  I  P  A  F  L  D  C  N  :  Q  *  N  *  R  I  K  I  *  F </second_frame>
            <third_frame>   T  S  H  I  K  T  P  S  T  P  T  P  L  F  L  I  P  N  F  Q  S  Q  K  Q  Q  Q  E  A  Y  *  *  T  M  A  T  V  T  S  A  A  V  A  I  P  S  F  T  G  L  K  A  G  A  S  S  S  S  R  V  S  T  G  A  S  A  K  V  A  A  A  P  V  A  R  L  T  V  K  A  S  L  K  D  V  G  A  V  V  A  A  T  A  V  S  A  M  L  A  S  N  A  M  A  L  E  V  L  L  G  G  D  D  G  S  L  A  F  I  P  G  N  F  S  V  S  A  G  E  K  I  T  F  K  N  N  A  G  F  P  H  N  V  V  F  D  E  D  E  I  P  A  G  V  D  A  S  K  I  S  M  S  E  E  D  L  L  N  A  A  G  E  T  Y  S  V  T  L  S  E  K  G  T  Y  T  F  Y  C  A  P  H  Q  G  A  G  M  V  G  K  V  T  V  N  *  F  F  S  H  L  C  F  V  K  V  D  L  S  S  H  Q  F  Q  H  F  P  F  S  I  A  L  L  F  L  R  C  N  E  N  S  G  N  *  S  C  I  C  I  H  V  M  S  F  C  D  *  Y  Q  L  F  W  T  V  I :   N  E  T  K  E  *  K  Y  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2483" stop="2998"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMATVTSAAVAIPSFTGLKAGASSSSRVSTGASAKVAAAPVARLTVKASLKDVGAVVAATAVSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="2388" e_stop="3174"/>
            <exon e_start="3340" e_stop="3381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2388" e_stop="3174" e_length="787"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3175" i_stop="3339" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="0.571">
            <gDNA_exon_boundary e_start="3340" e_stop="3381" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2388" stop="2820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2392" stop="3163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2392" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2393" stop="3139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2393" stop="2938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2393" stop="2561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2394" stop="3045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2394" stop="2829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2399" stop="3137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2401" stop="3170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2402" stop="3083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2403" stop="2681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2406" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2407" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2407" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2410" stop="3077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2413" stop="2826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2421" stop="3091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2433" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2434" stop="3158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2440" stop="3009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2440" stop="2824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2445" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2445" stop="3006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2445" stop="2953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2447" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2449" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2449" stop="2854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2450" stop="3065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2450" stop="2794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2451" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2451" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2451" stop="2784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2452" stop="3126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2452" stop="3055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2452" stop="2892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2453" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2453" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2453" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2453" stop="3117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2454" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2454" stop="3170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2455" stop="3174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2455" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2455" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2456" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2456" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2456" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2456" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2456" stop="2926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2457" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2458" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2458" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2458" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2458" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2459" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2459" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2459" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2459" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="3034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="3024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="2856" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2857" stop="3150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2858" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2858" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2870" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2879" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2884" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278415" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2900" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2900" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2900" stop="3168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2901" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2901" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2903" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2912" stop="3172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3019" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297510" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACCTCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAAT : TATTCACAGCAATGAAACTAAAGAATAAAAATATAATTCTCA</gDNA_template>
            <first_frame> Q  P  H  I  L  K  P  H  Q  L  L  L  P  F  S  *  F  Q  I  F  N  H  K  S  N  N  K  K  H  I  N  K  Q  W  P  L  L  P  L  L  L  L  L  F  H  L  S  L  A  L  R  L  V  L  H  H  L  P  E  L  A  P  V  H  P  L  R  W  Q  L  P  Q  L  P  D  *  L  *  R  R  L  *  K  M  S  V  L  W  L  L  P  P  L  L  A  R  C  L  L  A  M  P  W  H  L  K  C  C  L  V  V  M  M  G  V  *  L  L  F  L  G  T  S  A  L  V  L  V  R  K  L  H  S  R  T  M  Q  G  S  H  T  T  S  Y  L  M  K  M  K  S  Q  L  V  W  M  L  V  R  F  P  C  L  K  R  I  F  *  M  Q  Q  E  R  H  T  V  S  L  *  V  R  K  E  L  T  L  S  T  V  H  L  T  R  E  L  E  W  L  A  K  L  L  S  T  N  F  F  H  T  S  V  L  *  K  L  I  *  V  P  I  N  F  N  I  F  L  L  V  L  P  F  S  F  *  G  V  M  K  T  Q  E  I  K  V  A  Y  V  S  M  *  C  H  F  V  I  N  T  S  F  F  G  L  *   : L  F  T  A  M  K  L  K  N  K  N  I  I  L  </first_frame>
            <second_frame>  N  L  T  Y  *  N  P  I  N  S  Y  S  P  F  L  D  S  K  F  S  I  T  K  A  T  T  R  S  I  L  I  N  N  G  H  C  Y  L  C  C  C  C  Y  S  I  F  H  W  P  *  G  W  C  F  I  I  F  Q  S  *  H  R  C  I  R  *  G  G  S  C  P  S  C  Q  I  D  C  E  G  V  F  E  R  C  R  C  C  G  C  C  H  R  C  *  R  D  A  C  *  Q  C  H  G  T  *  S  V  A  W  W  *  *  W  E  S  S  F  Y  S  W  E  L  Q  R  *  C  W  *  E  N  Y  I  Q  E  Q  C  R  V  P  T  Q  R  R  I  *  *  R  *  N  P  S  W  C  G  C  *  *  D  F  H  V  *  R  G  S  S  E  C  S  R  R  D  I  Q  C  H  F  E  *  E  R  N  L  H  F  L  L  C  T  S  P  G  S  W  N  G  W  Q  S  Y  C  Q  L  I  F  F  T  P  L  F  C  K  S  *  F  E  F  P  S  I  S  T  F  S  F  *  Y  C  P  S  L  F  E  V  *  *  K  L  R  K  L  K  L  H  M  Y  P  C  N  V  I  L  *  L  I  P  A  F  L  D  C  N  :  Y  S  Q  Q  *  N  *  R  I  K  I  *  F  S </second_frame>
            <third_frame>   T  S  H  I  K  T  P  S  T  P  T  P  L  F  L  I  P  N  F  Q  S  Q  K  Q  Q  Q  E  A  Y  *  *  T  M  A  T  V  T  S  A  A  V  A  I  P  S  F  T  G  L  K  A  G  A  S  S  S  S  R  V  S  T  G  A  S  A  K  V  A  A  A  P  V  A  R  L  T  V  K  A  S  L  K  D  V  G  A  V  V  A  A  T  A  V  S  A  M  L  A  S  N  A  M  A  L  E  V  L  L  G  G  D  D  G  S  L  A  F  I  P  G  N  F  S  V  S  A  G  E  K  I  T  F  K  N  N  A  G  F  P  H  N  V  V  F  D  E  D  E  I  P  A  G  V  D  A  S  K  I  S  M  S  E  E  D  L  L  N  A  A  G  E  T  Y  S  V  T  L  S  E  K  G  T  Y  T  F  Y  C  A  P  H  Q  G  A  G  M  V  G  K  V  T  V  N  *  F  F  S  H  L  C  F  V  K  V  D  L  S  S  H  Q  F  Q  H  F  P  F  S  I  A  L  L  F  L  R  C  N  E  N  S  G  N  *  S  C  I  C  I  H  V  M  S  F  C  D  *  Y  Q  L  F  W  T  V  I :   I  H  S  N  E  T  K  E  *  K  Y  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2483" stop="2998"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMATVTSAAVAIPSFTGLKAGASSSSRVSTGASAKVAAAPVARLTVKASLKDVGAVVAATAVSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="2388" e_stop="3133"/>
            <exon e_start="3518" e_stop="3537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.273" e_score="0.947"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="2388" e_stop="3133" e_length="746"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.273">
            <gDNA_intron_boundary i_start="3134" i_stop="3517" i_length="384"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="3518" e_stop="3537" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2388" stop="2820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2392" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2393" stop="2938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2393" stop="2561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2394" stop="3045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2394" stop="2829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2402" stop="3083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2403" stop="2681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2410" stop="3077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2413" stop="2826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2421" stop="3091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2440" stop="3009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2440" stop="2824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2445" stop="3006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2445" stop="2953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2449" stop="2854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2450" stop="3065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2450" stop="2794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2451" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2451" stop="2784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2452" stop="3126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2452" stop="3055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2452" stop="2892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2453" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2453" stop="3117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2455" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2456" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2456" stop="2926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2458" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2459" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2459" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2459" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="3034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="3024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2460" stop="2695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2461" stop="2808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2462" stop="3034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2462" stop="2971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2463" stop="2989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2463" stop="2854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2463" stop="2727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2465" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2466" stop="3012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2466" stop="2989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2466" stop="2751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2466" stop="2712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="3119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="3064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="2974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="2955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="2955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="2929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="2860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2469" stop="2856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2470" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2470" stop="3031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2472" stop="3011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2472" stop="2892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2473" stop="3104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2474" stop="3101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2474" stop="3019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2475" stop="3100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2476" stop="3024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2477" stop="2838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2480" stop="2982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2482" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2484" stop="3059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2484" stop="3021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2484" stop="3004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2484" stop="2757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2485" stop="2960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2485" stop="2958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2486" stop="2995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2488" stop="2973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2494" stop="3026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2507" stop="2942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2513" stop="3065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2524" stop="3057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2525" stop="2973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2534" stop="2973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2599" stop="3117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412976" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2611" stop="3067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2631" stop="3124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2661" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2725" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2762" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2766" stop="3071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2784" stop="3122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2941" stop="3133"/>
              <exon start="3518" stop="3537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215563" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACCTCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTA : TATAACAAAGAATGGTATAA</gDNA_template>
            <first_frame> Q  P  H  I  L  K  P  H  Q  L  L  L  P  F  S  *  F  Q  I  F  N  H  K  S  N  N  K  K  H  I  N  K  Q  W  P  L  L  P  L  L  L  L  L  F  H  L  S  L  A  L  R  L  V  L  H  H  L  P  E  L  A  P  V  H  P  L  R  W  Q  L  P  Q  L  P  D  *  L  *  R  R  L  *  K  M  S  V  L  W  L  L  P  P  L  L  A  R  C  L  L  A  M  P  W  H  L  K  C  C  L  V  V  M  M  G  V  *  L  L  F  L  G  T  S  A  L  V  L  V  R  K  L  H  S  R  T  M  Q  G  S  H  T  T  S  Y  L  M  K  M  K  S  Q  L  V  W  M  L  V  R  F  P  C  L  K  R  I  F  *  M  Q  Q  E  R  H  T  V  S  L  *  V  R  K  E  L  T  L  S  T  V  H  L  T  R  E  L  E  W  L  A  K  L  L  S  T  N  F  F  H  T  S  V  L  *  K  L  I  *  V  P  I  N  F  N  I  F  L  L  V  L  P  F  S  F  *  G  V  M  K  T  Q  E  I  K  V  A  Y  V  S  M  Y :   I  T  K  N  G  I  </first_frame>
            <second_frame>  N  L  T  Y  *  N  P  I  N  S  Y  S  P  F  L  D  S  K  F  S  I  T  K  A  T  T  R  S  I  L  I  N  N  G  H  C  Y  L  C  C  C  C  Y  S  I  F  H  W  P  *  G  W  C  F  I  I  F  Q  S  *  H  R  C  I  R  *  G  G  S  C  P  S  C  Q  I  D  C  E  G  V  F  E  R  C  R  C  C  G  C  C  H  R  C  *  R  D  A  C  *  Q  C  H  G  T  *  S  V  A  W  W  *  *  W  E  S  S  F  Y  S  W  E  L  Q  R  *  C  W  *  E  N  Y  I  Q  E  Q  C  R  V  P  T  Q  R  R  I  *  *  R  *  N  P  S  W  C  G  C  *  *  D  F  H  V  *  R  G  S  S  E  C  S  R  R  D  I  Q  C  H  F  E  *  E  R  N  L  H  F  L  L  C  T  S  P  G  S  W  N  G  W  Q  S  Y  C  Q  L  I  F  F  T  P  L  F  C  K  S  *  F  E  F  P  S  I  S  T  F  S  F  *  Y  C  P  S  L  F  E  V  *  *  K  L  R  K  L  K  L  H  M  Y  P  C   : I  *  Q  R  M  V  * </second_frame>
            <third_frame>   T  S  H  I  K  T  P  S  T  P  T  P  L  F  L  I  P  N  F  Q  S  Q  K  Q  Q  Q  E  A  Y  *  *  T  M  A  T  V  T  S  A  A  V  A  I  P  S  F  T  G  L  K  A  G  A  S  S  S  S  R  V  S  T  G  A  S  A  K  V  A  A  A  P  V  A  R  L  T  V  K  A  S  L  K  D  V  G  A  V  V  A  A  T  A  V  S  A  M  L  A  S  N  A  M  A  L  E  V  L  L  G  G  D  D  G  S  L  A  F  I  P  G  N  F  S  V  S  A  G  E  K  I  T  F  K  N  N  A  G  F  P  H  N  V  V  F  D  E  D  E  I  P  A  G  V  D  A  S  K  I  S  M  S  E  E  D  L  L  N  A  A  G  E  T  Y  S  V  T  L  S  E  K  G  T  Y  T  F  Y  C  A  P  H  Q  G  A  G  M  V  G  K  V  T  V  N  *  F  F  S  H  L  C  F  V  K  V  D  L  S  S  H  Q  F  Q  H  F  P  F  S  I  A  L  L  F  L  R  C  N  E  N  S  G  N  *  S  C  I  C  I  H  V  :  Y  N  K  E  W  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2483" stop="2998"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMATVTSAAVAIPSFTGLKAGASSSSRVSTGASAKVAAAPVARLTVKASLKDVGAVVAATAVSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="3374" PGL_stop="2393"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3374" e_stop="3353"/>
            <exon e_start="3248" e_stop="2393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.636"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.636">
            <gDNA_exon_boundary e_start="3374" e_stop="3353" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3352" i_stop="3249" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="3248" e_stop="2393" e_length="856"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3374" stop="3353"/>
              <exon start="3248" stop="2775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3152" stop="2647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3134" stop="2466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2874" stop="2500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2814" stop="2393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2794" stop="2485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2783" stop="2485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATATTTTTATTCTTTAGTTTC : TTTAAGCAACTGAAACGGGTATGTTATTTTACCATCAGGAGGAAGGTTGAACTTTTTGATGTTACAAAAGCAACATTACAGTCCAAAAAAGCTGGTATTAATCACAAAATGACATTACATGGATACATATGCAACTTTAATTTCCTGAGTTTTCATTACACCTCAAAAAGAGAAGGGCAATACTAAAAGGAAAATGTTGAAATTGATGGGAACTCAAATCAACTTTTACAAAACAGAGGTGTGAAAAAAATTAGTTGACAGTAACTTTGCCAACCATTCCAGCTCCCTGGTGAGGTGCACAGTAGAAAGTGTAAGTTCCTTTCTCACTCAAAGTGACACTGTATGTCTCTCCTGCTGCATTCAGAAGATCCTCTTCAGACATGGAAATCTTACTAGCATCCACACCAGCTGGGATTTCATCTTCATCAAATACGACGTTGTGTGGGAACCCTGCATTGTTCTTGAATGTAATTTTCTCACCAGCACTAACGCTGAAGTTCCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGCCATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACAGCACCGACATCTTTCAAAGACGCCTTCACAGTCAATCTGGCAACTGGGGCAGCTGCCACCTTAGCGGATGCACCGGTGCTAACTCTGGAAGATGATGAAGCACCAGCCTTAAGGCCAGTGAAAGATGGAATAGCAACAGCAGCAGAGGTAACAGTGGCCATTGTTTATTAATATGCTTCTTGTTGTTGCTTTTGTGATTGAAAATTTGGAATCAAGAAAAGGGGAGTAGGAGTTGATGGGGTTTTAATATGTGA</gDNA_template>
            <first_frame> Y  I  F  I  L  *  F   : L  *  A  T  E  T  G  M  L  F  Y  H  Q  E  E  G  *  T  F  *  C  Y  K  S  N  I  T  V  Q  K  S  W  Y  *  S  Q  N  D  I  T  W  I  H  M  Q  L  *  F  P  E  F  S  L  H  L  K  K  R  R  A  I  L  K  G  K  C  *  N  *  W  E  L  K  S  T  F  T  K  Q  R  C  E  K  N  *  L  T  V  T  L  P  T  I  P  A  P  W  *  G  A  Q  *  K  V  *  V  P  F  S  L  K  V  T  L  Y  V  S  P  A  A  F  R  R  S  S  S  D  M  E  I  L  L  A  S  T  P  A  G  I  S  S  S  S  N  T  T  L  C  G  N  P  A  L  F  L  N  V  I  F  S  P  A  L  T  L  K  F  P  G  I  K  A  R  L  P  S  S  P  P  S  N  T  S  S  A  M  A  L  L  A  S  I  A  L  T  A  V  A  A  T  T  A  P  T  S  F  K  D  A  F  T  V  N  L  A  T  G  A  A  A  T  L  A  D  A  P  V  L  T  L  E  D  D  E  A  P  A  L  R  P  V  K  D  G  I  A  T  A  A  E  V  T  V  A  I  V  Y  *  Y  A  S  C  C  C  F  C  D  *  K  F  G  I  K  K  R  G  V  G  V  D  G  V  L  I  C   </first_frame>
            <second_frame>  I  F  L  F  F  S  F  :  F  K  Q  L  K  R  V  C  Y  F  T  I  R  R  K  V  E  L  F  D  V  T  K  A  T  L  Q  S  K  K  A  G  I  N  H  K  M  T  L  H  G  Y  I  C  N  F  N  F  L  S  F  H  Y  T  S  K  R  E  G  Q  Y  *  K  E  N  V  E  I  D  G  N  S  N  Q  L  L  Q  N  R  G  V  K  K  I  S  *  Q  *  L  C  Q  P  F  Q  L  P  G  E  V  H  S  R  K  C  K  F  L  S  H  S  K  *  H  C  M  S  L  L  L  H  S  E  D  P  L  Q  T  W  K  S  Y  *  H  P  H  Q  L  G  F  H  L  H  Q  I  R  R  C  V  G  T  L  H  C  S  *  M  *  F  S  H  Q  H  *  R  *  S  S  Q  E  *  K  L  D  S  H  H  H  H  Q  A  T  L  Q  V  P  W  H  C  *  Q  A  S  R  *  Q  R  W  Q  Q  P  Q  H  R  H  L  S  K  T  P  S  Q  S  I  W  Q  L  G  Q  L  P  P  *  R  M  H  R  C  *  L  W  K  M  M  K  H  Q  P  *  G  Q  *  K  M  E  *  Q  Q  Q  Q  R  *  Q  W  P  L  F  I  N  M  L  L  V  V  A  F  V  I  E  N  L  E  S  R  K  G  E  *  E  L  M  G  F  *  Y  V  </second_frame>
            <third_frame>   Y  F  Y  S  L  V  S :   L  S  N  *  N  G  Y  V  I  L  P  S  G  G  R  L  N  F  L  M  L  Q  K  Q  H  Y  S  P  K  K  L  V  L  I  T  K  *  H  Y  M  D  T  Y  A  T  L  I  S  *  V  F  I  T  P  Q  K  E  K  G  N  T  K  R  K  M  L  K  L  M  G  T  Q  I  N  F  Y  K  T  E  V  *  K  K  L  V  D  S  N  F  A  N  H  S  S  S  L  V  R  C  T  V  E  S  V  S  S  F  L  T  Q  S  D  T  V  C  L  S  C  C  I  Q  K  I  L  F  R  H  G  N  L  T  S  I  H  T  S  W  D  F  I  F  I  K  Y  D  V  V  W  E  P  C  I  V  L  E  C  N  F  L  T  S  T  N  A  E  V  P  R  N  K  S  *  T  P  I  I  T  T  K  Q  H  F  K  C  H  G  I  A  S  K  H  R  A  N  S  G  G  S  N  H  S  T  D  I  F  Q  R  R  L  H  S  Q  S  G  N  W  G  S  C  H  L  S  G  C  T  G  A  N  S  G  R  *  *  S  T  S  L  K  A  S  E  R  W  N  S  N  S  S  R  G  N  S  G  H  C  L  L  I  C  F  L  L  L  L  L  *  L  K  I  W  N  Q  E  K  G  S  R  S  *  W  G  F  N  M  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2934" stop="2476"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPFSLKVTLYVSPAAFRRSSSDMEILLASTPAGISSSSNTTLCGNPALFLNVIFSPALTLKFPGIKARLPSSPPSNTSSAMALLASIALTAVAATTAPTSFKDAFTVNLATGAAATLADAPVLTLEDDEAPALRPVKDGIATAAEVTVAIVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3373" stop="3353"/>
                    <exon start="3248" stop="3063"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFLFFSFFKQLKRVCYFTIRRKVELFDVTKATLQSKKAGINHKMTLHGYICNFNFLSFHYTSKREGQY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3262" e_stop="2393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="3262" e_stop="2393" e_length="870"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3262" stop="2594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3152" stop="2647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3134" stop="2466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2874" stop="2500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2814" stop="2393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2794" stop="2485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2783" stop="2485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATTTTTGAAGAGTTTAAGCAACTGAAACGGGTATGTTATTTTACCATCAGGAGGAAGGTTGAACTTTTTGATGTTACAAAAGCAACATTACAGTCCAAAAAAGCTGGTATTAATCACAAAATGACATTACATGGATACATATGCAACTTTAATTTCCTGAGTTTTCATTACACCTCAAAAAGAGAAGGGCAATACTAAAAGGAAAATGTTGAAATTGATGGGAACTCAAATCAACTTTTACAAAACAGAGGTGTGAAAAAAATTAGTTGACAGTAACTTTGCCAACCATTCCAGCTCCCTGGTGAGGTGCACAGTAGAAAGTGTAAGTTCCTTTCTCACTCAAAGTGACACTGTATGTCTCTCCTGCTGCATTCAGAAGATCCTCTTCAGACATGGAAATCTTACTAGCATCCACACCAGCTGGGATTTCATCTTCATCAAATACGACGTTGTGTGGGAACCCTGCATTGTTCTTGAATGTAATTTTCTCACCAGCACTAACGCTGAAGTTCCCAGGAATAAAAGCTAGACTCCCATCATCACCACCAAGCAACACTTCAAGTGCCATGGCATTGCTAGCAAGCATCGCGCTAACAGCGGTGGCAGCAACCACAGCACCGACATCTTTCAAAGACGCCTTCACAGTCAATCTGGCAACTGGGGCAGCTGCCACCTTAGCGGATGCACCGGTGCTAACTCTGGAAGATGATGAAGCACCAGCCTTAAGGCCAGTGAAAGATGGAATAGCAACAGCAGCAGAGGTAACAGTGGCCATTGTTTATTAATATGCTTCTTGTTGTTGCTTTTGTGATTGAAAATTTGGAATCAAGAAAAGGGGAGTAGGAGTTGATGGGGTTTTAATATGTGA</gDNA_template>
            <first_frame> T  F  L  K  S  L  S  N  *  N  G  Y  V  I  L  P  S  G  G  R  L  N  F  L  M  L  Q  K  Q  H  Y  S  P  K  K  L  V  L  I  T  K  *  H  Y  M  D  T  Y  A  T  L  I  S  *  V  F  I  T  P  Q  K  E  K  G  N  T  K  R  K  M  L  K  L  M  G  T  Q  I  N  F  Y  K  T  E  V  *  K  K  L  V  D  S  N  F  A  N  H  S  S  S  L  V  R  C  T  V  E  S  V  S  S  F  L  T  Q  S  D  T  V  C  L  S  C  C  I  Q  K  I  L  F  R  H  G  N  L  T  S  I  H  T  S  W  D  F  I  F  I  K  Y  D  V  V  W  E  P  C  I  V  L  E  C  N  F  L  T  S  T  N  A  E  V  P  R  N  K  S  *  T  P  I  I  T  T  K  Q  H  F  K  C  H  G  I  A  S  K  H  R  A  N  S  G  G  S  N  H  S  T  D  I  F  Q  R  R  L  H  S  Q  S  G  N  W  G  S  C  H  L  S  G  C  T  G  A  N  S  G  R  *  *  S  T  S  L  K  A  S  E  R  W  N  S  N  S  S  R  G  N  S  G  H  C  L  L  I  C  F  L  L  L  L  L  *  L  K  I  W  N  Q  E  K  G  S  R  S  *  W  G  F  N  M  * </first_frame>
            <second_frame>  H  F  *  R  V  *  A  T  E  T  G  M  L  F  Y  H  Q  E  E  G  *  T  F  *  C  Y  K  S  N  I  T  V  Q  K  S  W  Y  *  S  Q  N  D  I  T  W  I  H  M  Q  L  *  F  P  E  F  S  L  H  L  K  K  R  R  A  I  L  K  G  K  C  *  N  *  W  E  L  K  S  T  F  T  K  Q  R  C  E  K  N  *  L  T  V  T  L  P  T  I  P  A  P  W  *  G  A  Q  *  K  V  *  V  P  F  S  L  K  V  T  L  Y  V  S  P  A  A  F  R  R  S  S  S  D  M  E  I  L  L  A  S  T  P  A  G  I  S  S  S  S  N  T  T  L  C  G  N  P  A  L  F  L  N  V  I  F  S  P  A  L  T  L  K  F  P  G  I  K  A  R  L  P  S  S  P  P  S  N  T  S  S  A  M  A  L  L  A  S  I  A  L  T  A  V  A  A  T  T  A  P  T  S  F  K  D  A  F  T  V  N  L  A  T  G  A  A  A  T  L  A  D  A  P  V  L  T  L  E  D  D  E  A  P  A  L  R  P  V  K  D  G  I  A  T  A  A  E  V  T  V  A  I  V  Y  *  Y  A  S  C  C  C  F  C  D  *  K  F  G  I  K  K  R  G  V  G  V  D  G  V  L  I  C   </second_frame>
            <third_frame>   I  F  E  E  F  K  Q  L  K  R  V  C  Y  F  T  I  R  R  K  V  E  L  F  D  V  T  K  A  T  L  Q  S  K  K  A  G  I  N  H  K  M  T  L  H  G  Y  I  C  N  F  N  F  L  S  F  H  Y  T  S  K  R  E  G  Q  Y  *  K  E  N  V  E  I  D  G  N  S  N  Q  L  L  Q  N  R  G  V  K  K  I  S  *  Q  *  L  C  Q  P  F  Q  L  P  G  E  V  H  S  R  K  C  K  F  L  S  H  S  K  *  H  C  M  S  L  L  L  H  S  E  D  P  L  Q  T  W  K  S  Y  *  H  P  H  Q  L  G  F  H  L  H  Q  I  R  R  C  V  G  T  L  H  C  S  *  M  *  F  S  H  Q  H  *  R  *  S  S  Q  E  *  K  L  D  S  H  H  H  H  Q  A  T  L  Q  V  P  W  H  C  *  Q  A  S  R  *  Q  R  W  Q  Q  P  Q  H  R  H  L  S  K  T  P  S  Q  S  I  W  Q  L  G  Q  L  P  P  *  R  M  H  R  C  *  L  W  K  M  M  K  H  Q  P  *  G  Q  *  K  M  E  *  Q  Q  Q  Q  R  *  Q  W  P  L  F  I  N  M  L  L  V  V  A  F  V  I  E  N  L  E  S  R  K  G  E  *  E  L  M  G  F  *  Y  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2934" stop="2476"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPFSLKVTLYVSPAAFRRSSSDMEILLASTPAGISSSSNTTLCGNPALFLNVIFSPALTLKFPGIKARLPSSPPSNTSSAMALLASIALTAVAATTAPTSFKDAFTVNLATGAAATLADAPVLTLEDDEAPALRPVKDGIATAAEVTVAIVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3260" stop="3063"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFEEFKQLKRVCYFTIRRKVELFDVTKATLQSKKAGINHKMTLHGYICNFNFLSFHYTSKREGQY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="4367" PGL_stop="3524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4367" e_stop="4288"/>
            <exon e_start="3978" e_stop="3524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.911" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4367" e_stop="4288" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.911">
            <gDNA_intron_boundary i_start="4287" i_stop="3979" i_length="309"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3978" e_stop="3524" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4367" stop="4288"/>
              <exon start="3978" stop="3524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329815" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGAGACACAGAGATAGCTATGGGCGCGTATCAACCTCATCACACTTGGGCTATGAAGAAAAGACATCCACATGGCCAG : GTATATGGTTATAGAATGTCTCTATGGGCAGAGCACATGGGCAAGTTAGACGATATCTTCACAAAGCCAGAAAGTTTGAACTGCGTGAAGCATGTAAATGAGGTTGCTGAAGATAACTGGAAAAGATTTACAGCTCATGAATTCAAACCTTTACAAGGTCATCTTCTCAAGTATCCCGTCCAAGTAGGTACTGATGGGCAAGTAAGTTCCTTGCCTGGTCATGAATATTTTCCTGATGTTGGTGGTAAAATACTAGGAGCTCGAACCAATCTTCCTGATGCTTTAACCACATAACTCTTCCCGTCTTCCGGTTTTGTAATGCCTGTAAATCAAACCAATTTCGTATAGAATTGGTGAGAATAACTAGCAGAATTCCAACTCAGTGAGCAAGAAATATATCATCTTGGTTGCTGTCGAAGTTGCGCATCATGTTTACTAATGTTATACCATTCTTT</gDNA_template>
            <first_frame> Q  E  T  Q  R  *  L  W  A  R  I  N  L  I  T  L  G  L  *  R  K  D  I  H  M  A  R :   Y  M  V  I  E  C  L  Y  G  Q  S  T  W  A  S  *  T  I  S  S  Q  S  Q  K  V  *  T  A  *  S  M  *  M  R  L  L  K  I  T  G  K  D  L  Q  L  M  N  S  N  L  Y  K  V  I  F  S  S  I  P  S  K  *  V  L  M  G  K  *  V  P  C  L  V  M  N  I  F  L  M  L  V  V  K  Y  *  E  L  E  P  I  F  L  M  L  *  P  H  N  S  S  R  L  P  V  L  *  C  L  *  I  K  P  I  S  Y  R  I  G  E  N  N  *  Q  N  S  N  S  V  S  K  K  Y  I  I  L  V  A  V  E  V  A  H  H  V  Y  *  C  Y  T  I  L  </first_frame>
            <second_frame>  K  R  H  R  D  S  Y  G  R  V  S  T  S  S  H  L  G  Y  E  E  K  T  S  T  W  P   : G  I  W  L  *  N  V  S  M  G  R  A  H  G  Q  V  R  R  Y  L  H  K  A  R  K  F  E  L  R  E  A  C  K  *  G  C  *  R  *  L  E  K  I  Y  S  S  *  I  Q  T  F  T  R  S  S  S  Q  V  S  R  P  S  R  Y  *  W  A  S  K  F  L  A  W  S  *  I  F  S  *  C  W  W  *  N  T  R  S  S  N  Q  S  S  *  C  F  N  H  I  T  L  P  V  F  R  F  C  N  A  C  K  S  N  Q  F  R  I  E  L  V  R  I  T  S  R  I  P  T  Q  *  A  R  N  I  S  S  W  L  L  S  K  L  R  I  M  F  T  N  V  I  P  F  F </second_frame>
            <third_frame>   R  D  T  E  I  A  M  G  A  Y  Q  P  H  H  T  W  A  M  K  K  R  H  P  H  G  Q  :  V  Y  G  Y  R  M  S  L  W  A  E  H  M  G  K  L  D  D  I  F  T  K  P  E  S  L  N  C  V  K  H  V  N  E  V  A  E  D  N  W  K  R  F  T  A  H  E  F  K  P  L  Q  G  H  L  L  K  Y  P  V  Q  V  G  T  D  G  Q  V  S  S  L  P  G  H  E  Y  F  P  D  V  G  G  K  I  L  G  A  R  T  N  L  P  D  A  L  T  T  *  L  F  P  S  S  G  F  V  M  P  V  N  Q  T  N  F  V  *  N  W  *  E  *  L  A  E  F  Q  L  S  E  Q  E  I  Y  H  L  G  C  C  R  S  C  A  S  C  L  L  M  L  Y  H  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4365" stop="4288"/>
                    <exon start="3978" stop="3685"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDTEIAMGAYQPHHTWAMKKRHPHGQVYGYRMSLWAEHMGKLDDIFTKPESLNCVKHVNEVAEDNWKRFTAHEFKPLQGHLLKYPVQVGTDGQVSSLPGHEYFPDVGGKILGARTNLPDALTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="11156" PGL_stop="10378"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11156" e_stop="10378"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="11156" e_stop="10378" e_length="779"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11156" stop="10378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549333" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTTCCACCACCGTTGGCTACGGCGGAGACACCAATTTTTGTTCATTTTCCCCCCTTCCCGTCGGTTAACCACTCCGCCATAGCTGGCGGTTACACGATTCACCTTCAACTTTTTATATATCACATTGCCTCAAGGATCGTTTTTGTTTTGTGTGTGTAAATTTGTGTGTGTGTATATATATATATATATATATATATATATATATATATTATATATCAATGGCGGATGAGAATTGTGAAAATGTGGTATATCTTCATGGAGACTTTGATTTGAAGATTATAGAAGCTCGAAGGTTACCTAACATGGATTTAGTAACCGAACGTCTCAGTCGATGCTTTACAGCTTTAGATATCTGCCGGAAACCGTTTACTCGCCGGAGAAGGAAAGGTCATCGCCGGAAAATCATCACCAGTGATCCGTATGTGACGGTTTGCTTAACCGGCGCTACTGTGGCGCGTACGCGCGTGATATCGAATTGTCAGGATCCTGTTTGGAACGAGCATTTTAAAATCCCGCTTGCTCATCCGGTTTCGGTTGTAGAGTTTCTGGTTAAGGATAATGATGTATTCGGTGCGGATTATATCGGAGTTGCTACCGTGCTGGCTGAGAAGATCAAGTCCGGTGAGCTAATTGATGATTGGTTTCCTATAATTGGACCTTATGGAAAACCTCCAAAGCCTGATTGTGCAATTCGGCTGCAAATGAGATTCATACATTGTGATGGTAATCCGTCTTATAACGGCGGTATATCAGAAGATTTTGGCCTGAAAGCGAG</gDNA_template>
            <first_frame> L  F  S  T  T  V  G  Y  G  G  D  T  N  F  C  S  F  S  P  L  P  V  G  *  P  L  R  H  S  W  R  L  H  D  S  P  S  T  F  Y  I  S  H  C  L  K  D  R  F  C  F  V  C  V  N  L  C  V  C  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  Y  I  S  M  A  D  E  N  C  E  N  V  V  Y  L  H  G  D  F  D  L  K  I  I  E  A  R  R  L  P  N  M  D  L  V  T  E  R  L  S  R  C  F  T  A  L  D  I  C  R  K  P  F  T  R  R  R  R  K  G  H  R  R  K  I  I  T  S  D  P  Y  V  T  V  C  L  T  G  A  T  V  A  R  T  R  V  I  S  N  C  Q  D  P  V  W  N  E  H  F  K  I  P  L  A  H  P  V  S  V  V  E  F  L  V  K  D  N  D  V  F  G  A  D  Y  I  G  V  A  T  V  L  A  E  K  I  K  S  G  E  L  I  D  D  W  F  P  I  I  G  P  Y  G  K  P  P  K  P  D  C  A  I  R  L  Q  M  R  F  I  H  C  D  G  N  P  S  Y  N  G  G  I  S  E  D  F  G  L  K  A   </first_frame>
            <second_frame>  F  F  P  P  P  L  A  T  A  E  T  P  I  F  V  H  F  P  P  F  P  S  V  N  H  S  A  I  A  G  G  Y  T  I  H  L  Q  L  F  I  Y  H  I  A  S  R  I  V  F  V  L  C  V  *  I  C  V  C  V  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  I  Y  Q  W  R  M  R  I  V  K  M  W  Y  I  F  M  E  T  L  I  *  R  L  *  K  L  E  G  Y  L  T  W  I  *  *  P  N  V  S  V  D  A  L  Q  L  *  I  S  A  G  N  R  L  L  A  G  E  G  K  V  I  A  G  K  S  S  P  V  I  R  M  *  R  F  A  *  P  A  L  L  W  R  V  R  A  *  Y  R  I  V  R  I  L  F  G  T  S  I  L  K  S  R  L  L  I  R  F  R  L  *  S  F  W  L  R  I  M  M  Y  S  V  R  I  I  S  E  L  L  P  C  W  L  R  R  S  S  P  V  S  *  L  M  I  G  F  L  *  L  D  L  M  E  N  L  Q  S  L  I  V  Q  F  G  C  K  *  D  S  Y  I  V  M  V  I  R  L  I  T  A  V  Y  Q  K  I  L  A  *  K  R  </second_frame>
            <third_frame>   F  F  H  H  R  W  L  R  R  R  H  Q  F  L  F  I  F  P  P  S  R  R  L  T  T  P  P  *  L  A  V  T  R  F  T  F  N  F  L  Y  I  T  L  P  Q  G  S  F  L  F  C  V  C  K  F  V  C  V  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  L  Y  I  N  G  G  *  E  L  *  K  C  G  I  S  S  W  R  L  *  F  E  D  Y  R  S  S  K  V  T  *  H  G  F  S  N  R  T  S  Q  S  M  L  Y  S  F  R  Y  L  P  E  T  V  Y  S  P  E  K  E  R  S  S  P  E  N  H  H  Q  *  S  V  C  D  G  L  L  N  R  R  Y  C  G  A  Y  A  R  D  I  E  L  S  G  S  C  L  E  R  A  F  *  N  P  A  C  S  S  G  F  G  C  R  V  S  G  *  G  *  *  C  I  R  C  G  L  Y  R  S  C  Y  R  A  G  *  E  D  Q  V  R  *  A  N  *  *  L  V  S  Y  N  W  T  L  W  K  T  S  K  A  *  L  C  N  S  A  A  N  E  I  H  T  L  *  W  *  S  V  L  *  R  R  Y  I  R  R  F  W  P  E  S  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11084" stop="10380"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLRHSWRLHDSPSTFYISHCLKDRFCFVCVNLCVCIYIYIYIYIYIYYISMADENCENVVYLHGDFDLKIIEARRLPNMDLVTERLSRCFTALDICRKPFTRRRRKGHRRKIITSDPYVTVCLTGATVARTRVISNCQDPVWNEHFKIPLAHPVSVVEFLVKDNDVFGADYIGVATVLAEKIKSGELIDDWFPIIGPYGKPPKPDCAIRLQMRFIHCDGNPSYNGGISEDFGLKA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="23934" PGL_stop="24750"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23934" e_stop="24750"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23934" e_stop="24750" e_length="817"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23934" stop="24750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689092" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCTCTGTAATGGAGTCGCCGCCGCCGCCGCCGATGAAAACCACGAAGCGCAGAGCAGCAGCAACAACGTCAATTACTGGATTAACCATTGATAATTCAGTTCTTCCTATAGAATTAATAGTTGAAATACTCATAAGATTGCCTGTAAAAACATTGCTGAAGATGAGATCTGTTTCAAAATCCTGGAGTTCTCTCATCTCAACTCCCGAATTTGTCAAAGCACATGTAAAATTTTCAGCCAATAATCGAGAATTTGCTCACCACAGGCTTCTTAGTATCAGGTCAGGTACTCACACTCACGACGACGGACGTACTAGTAGATGGAAAAATTTCCGCACATATTCTCTTAATGCAATCCTGTATGGAGAATCTCCCTGTTTACCTGTTGAGCTTCATAATTTTGGTATAAGTTATTATGTTTTGTGTTCATGTGATGGATTGTTCGTTATTTCAAAAACCTGGTATAATAATGACATTGAGGATCTGTTTCTATGGAATCCGTCTATTAGAAAGTTGAGTAAACTTCCTTATTCAGGAATTGATGTGTTCAATCGTAGATTTGCTTATGGATTTGGTTATATTGAATCTCAAAATGATTACCATATTGTTGAAATTGTGGCAAGTAAACCTAGTTATCTCATTGCTGATATTAGTGTTTATAGTTTAAGAAATAATTCGTGGAAAACCATTCATGAGTTCCCAAGTATCTCTTTGCCTGAAAATGTTAAATTTATTAAAGGAAAGTTCCATTGGATCACTGGTGGTGGTAGTGGTAGTAACGCGACATGGTTCAACCCCGGAGATGAGGGGTTTG</gDNA_template>
            <first_frame> V  S  S  V  M  E  S  P  P  P  P  P  M  K  T  T  K  R  R  A  A  A  T  T  S  I  T  G  L  T  I  D  N  S  V  L  P  I  E  L  I  V  E  I  L  I  R  L  P  V  K  T  L  L  K  M  R  S  V  S  K  S  W  S  S  L  I  S  T  P  E  F  V  K  A  H  V  K  F  S  A  N  N  R  E  F  A  H  H  R  L  L  S  I  R  S  G  T  H  T  H  D  D  G  R  T  S  R  W  K  N  F  R  T  Y  S  L  N  A  I  L  Y  G  E  S  P  C  L  P  V  E  L  H  N  F  G  I  S  Y  Y  V  L  C  S  C  D  G  L  F  V  I  S  K  T  W  Y  N  N  D  I  E  D  L  F  L  W  N  P  S  I  R  K  L  S  K  L  P  Y  S  G  I  D  V  F  N  R  R  F  A  Y  G  F  G  Y  I  E  S  Q  N  D  Y  H  I  V  E  I  V  A  S  K  P  S  Y  L  I  A  D  I  S  V  Y  S  L  R  N  N  S  W  K  T  I  H  E  F  P  S  I  S  L  P  E  N  V  K  F  I  K  G  K  F  H  W  I  T  G  G  G  S  G  S  N  A  T  W  F  N  P  G  D  E  G  F  </first_frame>
            <second_frame>  F  P  L  *  W  S  R  R  R  R  R  R  *  K  P  R  S  A  E  Q  Q  Q  Q  R  Q  L  L  D  *  P  L  I  I  Q  F  F  L  *  N  *  *  L  K  Y  S  *  D  C  L  *  K  H  C  *  R  *  D  L  F  Q  N  P  G  V  L  S  S  Q  L  P  N  L  S  K  H  M  *  N  F  Q  P  I  I  E  N  L  L  T  T  G  F  L  V  S  G  Q  V  L  T  L  T  T  T  D  V  L  V  D  G  K  I  S  A  H  I  L  L  M  Q  S  C  M  E  N  L  P  V  Y  L  L  S  F  I  I  L  V  *  V  I  M  F  C  V  H  V  M  D  C  S  L  F  Q  K  P  G  I  I  M  T  L  R  I  C  F  Y  G  I  R  L  L  E  S  *  V  N  F  L  I  Q  E  L  M  C  S  I  V  D  L  L  M  D  L  V  I  L  N  L  K  M  I  T  I  L  L  K  L  W  Q  V  N  L  V  I  S  L  L  I  L  V  F  I  V  *  E  I  I  R  G  K  P  F  M  S  S  Q  V  S  L  C  L  K  M  L  N  L  L  K  E  S  S  I  G  S  L  V  V  V  V  V  V  T  R  H  G  S  T  P  E  M  R  G  L </second_frame>
            <third_frame>   F  L  C  N  G  V  A  A  A  A  A  D  E  N  H  E  A  Q  S  S  S  N  N  V  N  Y  W  I  N  H  *  *  F  S  S  S  Y  R  I  N  S  *  N  T  H  K  I  A  C  K  N  I  A  E  D  E  I  C  F  K  I  L  E  F  S  H  L  N  S  R  I  C  Q  S  T  C  K  I  F  S  Q  *  S  R  I  C  S  P  Q  A  S  *  Y  Q  V  R  Y  S  H  S  R  R  R  T  Y  *  *  M  E  K  F  P  H  I  F  S  *  C  N  P  V  W  R  I  S  L  F  T  C  *  A  S  *  F  W  Y  K  L  L  C  F  V  F  M  *  W  I  V  R  Y  F  K  N  L  V  *  *  *  H  *  G  S  V  S  M  E  S  V  Y  *  K  V  E  *  T  S  L  F  R  N  *  C  V  Q  S  *  I  C  L  W  I  W  L  Y  *  I  S  K  *  L  P  Y  C  *  N  C  G  K  *  T  *  L  S  H  C  *  Y  *  C  L  *  F  K  K  *  F  V  E  N  H  S  *  V  P  K  Y  L  F  A  *  K  C  *  I  Y  *  R  K  V  P  L  D  H  W  W  W  *  W  *  *  R  D  M  V  Q  P  R  R  *  G  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23934" stop="24749"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSSVMESPPPPPMKTTKRRAAATTSITGLTIDNSVLPIELIVEILIRLPVKTLLKMRSVSKSWSSLISTPEFVKAHVKFSANNREFAHHRLLSIRSGTHTHDDGRTSRWKNFRTYSLNAILYGESPCLPVELHNFGISYYVLCSCDGLFVISKTWYNNDIEDLFLWNPSIRKLSKLPYSGIDVFNRRFAYGFGYIESQNDYHIVEIVASKPSYLIADISVYSLRNNSWKTIHEFPSISLPENVKFIKGKFHWITGGGSGSNATWFNPGDEGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="26709" PGL_stop="29537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27481" e_stop="28025"/>
            <exon e_start="28868" e_stop="29537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27481" e_stop="28025" e_length="545"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="28868" e_stop="29537" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27481" stop="28025"/>
              <exon start="28868" stop="28896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27503" stop="28002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27503" stop="27959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27510" stop="28025"/>
              <exon start="28868" stop="29103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27511" stop="28025"/>
              <exon start="28868" stop="28897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27514" stop="28025"/>
              <exon start="28868" stop="28930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27514" stop="27982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27514" stop="27921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27518" stop="28025"/>
              <exon start="28868" stop="29119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27521" stop="28025"/>
              <exon start="28868" stop="28976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27521" stop="27973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27521" stop="27964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27521" stop="27906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27521" stop="27849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27523" stop="27932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27525" stop="28025"/>
              <exon start="28868" stop="29134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27527" stop="28025"/>
              <exon start="28868" stop="29141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27528" stop="28025"/>
              <exon start="28868" stop="29055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27530" stop="28025"/>
              <exon start="28868" stop="29076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27532" stop="28025"/>
              <exon start="28868" stop="28959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27536" stop="28025"/>
              <exon start="28868" stop="29189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27541" stop="28025"/>
              <exon start="28868" stop="29512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27544" stop="28025"/>
              <exon start="28868" stop="29125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27546" stop="27978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27547" stop="27970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27548" stop="27981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27548" stop="27809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27553" stop="28025"/>
              <exon start="28868" stop="29230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27555" stop="28025"/>
              <exon start="28868" stop="29122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27556" stop="27989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27556" stop="27982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27556" stop="27922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27559" stop="28025"/>
              <exon start="28868" stop="29080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27559" stop="27857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27566" stop="27932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27569" stop="28025"/>
              <exon start="28868" stop="28919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27574" stop="28025"/>
              <exon start="28868" stop="29147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27577" stop="28025"/>
              <exon start="28868" stop="29191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27581" stop="28025"/>
              <exon start="28868" stop="28972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27583" stop="28025"/>
              <exon start="28868" stop="29012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27583" stop="28025"/>
              <exon start="28868" stop="28985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27584" stop="28025"/>
              <exon start="28868" stop="29041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27584" stop="28025"/>
              <exon start="28868" stop="28996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27584" stop="28025"/>
              <exon start="28868" stop="28902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27595" stop="28025"/>
              <exon start="28868" stop="29121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27595" stop="28025"/>
              <exon start="28868" stop="29052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27595" stop="28025"/>
              <exon start="28868" stop="28983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27610" stop="28017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27610" stop="27985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27613" stop="27982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27621" stop="28025"/>
              <exon start="28868" stop="28905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27761" stop="28025"/>
              <exon start="28868" stop="29215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27867" stop="28025"/>
              <exon start="28868" stop="29411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296386" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27867" stop="28025"/>
              <exon start="28868" stop="29411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27883" stop="28025"/>
              <exon start="28868" stop="29413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27917" stop="28025"/>
              <exon start="28868" stop="29512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27960" stop="28025"/>
              <exon start="28868" stop="29531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27978" stop="28025"/>
              <exon start="28868" stop="29343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28899" stop="29531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29138" stop="29527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29151" stop="29521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29162" stop="29527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29273" stop="29537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239060" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATCCAATAGTGTCACAACCTCATATCAAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG : GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTGATTTAGTTGA</gDNA_template>
            <first_frame> S  I  Q  *  C  H  N  L  I  S  N  Y  I  S  I  S  P  F  L  L  N  L  T  S  L  F  L  L  W  L  F  L  K  K  K  I  F  N  L  W  L  L  S  Q  I  F  C  S  N  P  L  Q  I  *  L  Q  L  Q  K  L  A  L  H  F  T  P  I  S  L  L  R  N  P  N  N  Q  F  S  R  T  S  K  Q  T  S  P  Y  *  L  Q  R  Q  Q  Q  H  L  M  L  R  K  K  W  L  K  V  K  E  Y  K  R  L  I  V  W  R  N  W  M  K  H  *  K  M  R  K  I  D  *  L  W  L  N  L  Q  A  K  I  V  N  V  R  K  I  F  I  L  L  W  *  I  *  V  R  H  V  T  M  S  I  S  C  W  *  S  E  M  K  R  R  R  L  R  H  S  A  G  E  K  R  L  T  R :   Y  H  I  S  T  S  T  K  A  W  R  R  S  T  R  K  K  A  L  A  R  T  N  L  P  V  M  Y  S  T  T  V  T  A  T  P  K  *  C  S  S  T  A  E  K  T  L  K  R  *  S  K  T  T  K  S  I  K  N  *  *  S  S  T  L  D  *  S  I  V  D  H  V  *  K  F  I  Q  Q  *  L  S  Y  R  N  R  W  L  I  Q  S  C  S  R  E  *  M  V  M  R  M  I  V  V  C  S  F  *  K  T  W  M  L  L  K  C  L  R  F  C  L  *  E  M  V  K  F  V  E  G  M  L  V  L  G  K  V  N  L  L  E  K  F  L  D  I  K  E  L  G  L  L  I  N  I  V  E  V  I  L  Y  T  *  L  G  H  L  I  L  C  *  M  I  M  D  *  L  S  G  E  K  T  K  L  T  W  L  R  F  K  F  W  Y  V  *  F  V  K  L  C  C  K  *  S  K  I  V  M  I  I  D  F  E  *  E  C  Y  *  P  *  F  S  * </first_frame>
            <second_frame>  Q  S  N  S  V  T  T  S  Y  Q  T  T  F  P  F  L  P  F  F  *  T  *  H  P  S  S  F  C  G  Y  S  *  K  K  K  S  L  I  Y  G  Y  S  H  K  F  F  A  Q  T  L  S  K  S  S  F  N  Y  K  N  *  P  F  T  L  L  Q  F  P  F  *  E  I  Q  T  I  N  F  Q  E  P  Q  N  K  Q  A  L  I  D  Y  K  G  N  S  S  T  *  C  *  E  K  S  G  *  K  *  K  S  T  K  G  *  *  Y  G  G  I  G  *  S  I  K  K  C  E  K  S  T  S  C  G  *  I  C  R  Q  R  *  *  T  F  E  K  Y  L  S  F  Y  G  E  F  K  *  D  M  *  R  C  R  F  L  V  G  D  R  R  *  N  G  E  D  *  G  T  L  P  E  R  K  D  *  Q   : G  T  T  F  Q  L  L  Q  K  H  G  E  D  P  R  G  R  R  H  W  P  G  P  T  C  R  *  C  T  L  L  R  *  Q  P  L  R  S  S  A  A  P  Q  Q  R  R  R  *  K  G  N  P  R  P  Q  N  R  *  K  I  N  S  P  R  R  W  I  E  A  L  W  T  M  C  E  S  L  S  N  S  D  *  A  I  E  T  D  G  *  Y  S  R  V  R  E  N  E  W  *  *  E  *  *  L  Y  A  V  F  E  R  H  G  C  Y  *  S  A  Y  V  F  V  Y  K  R  W  *  N  L  W  K  V  C  W  F  W  E  R  *  T  Y  W  R  N  S  *  I  S  R  S  *  G  Y  L  L  I  L  L  K  S  Y  Y  I  L  N  W  D  I  *  F  C  V  K  *  L  W  T  S  *  V  G  K  K  P  S  *  L  G  *  D  L  S  F  G  M  F  S  L  *  N  Y  V  V  S  D  Q  R  L  S  *  *  L  I  L  N  E  N  V  I  S  L  D  L  V   </second_frame>
            <third_frame>   N  P  I  V  S  Q  P  H  I  K  L  H  F  H  F  S  L  S  S  K  L  D  I  P  L  P  F  V  A  I  L  E  K  K  N  L  *  S  M  A  T  L  T  N  F  L  L  K  P  S  P  N  L  A  S  I  T  K  I  S  P  S  L  Y  S  N  F  P  F  E  K  S  K  Q  S  I  F  K  N  L  K  T  N  K  P  L  L  I  T  K  A  T  A  A  P  D  V  E  K  K  V  A  K  S  E  R  V  Q  K  V  N  S  M  E  E  L  D  E  A  L  K  N  A  K  N  R  L  V  V  V  E  F  A  G  K  D  S  E  R  S  K  N  I  Y  P  F  M  V  N  L  S  K  T  C  N  D  V  D  F  L  L  V  I  G  D  E  T  E  K  T  K  A  L  C  R  R  E  K  I  D  K  :  V  P  H  F  N  F  Y  K  S  M  E  K  I  H  E  E  E  G  I  G  P  D  Q  L  A  G  D  V  L  Y  Y  G  D  S  H  S  E  V  V  Q  L  H  S  R  E  D  V  E  K  V  I  Q  D  H  K  I  D  K  K  L  I  V  L  D  V  G  L  K  H  C  G  P  C  V  K  V  Y  P  T  V  I  K  L  S  K  Q  M  A  D  T  V  V  F  A  R  M  N  G  D  E  N  D  S  C  M  Q  F  L  K  D  M  D  V  I  E  V  P  T  F  L  F  I  R  D  G  E  I  C  G  R  Y  V  G  S  G  K  G  E  L  I  G  E  I  L  R  Y  Q  G  V  R  V  T  Y  *  Y  C  *  S  H  I  I  Y  L  I  G  T  F  D  F  V  L  N  D  Y  G  L  V  K  W  G  K  N  Q  V  D  L  V  E  I  *  V  L  V  C  L  V  C  K  T  M  L  *  V  I  K  D  C  H  D  N  *  F  *  M  R  M  L  L  A  L  I  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27594" stop="28025"/>
                    <exon start="28868" stop="29329"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMATLTNFLLKPSPNLASITKISPSLYSNFPFEKSKQSIFKNLKTNKPLLITKATAAPDVEKKVAKSERVQKVNSMEELDEALKNAKNRLVVVEFAGKDSERSKNIYPFMVNLSKTCNDVDFLLVIGDETEKTKALCRREKIDKVPHFNFYKSMEKIHEEEGIGPDQLAGDVLYYGDSHSEVVQLHSREDVEKVIQDHKIDKKLIVLDVGLKHCGPCVKVYPTVIKLSKQMADTVVFARMNGDENDSCMQFLKDMDVIEVPTFLFIRDGEICGRYVGSGKGELIGEILRYQGVRVTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26709" e_stop="26729"/>
            <exon e_start="29291" e_stop="29537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.409" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="26709" e_stop="26729" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.409" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26730" i_stop="29290" i_length="2561"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29291" e_stop="29537" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26709" stop="26729"/>
              <exon start="29291" stop="29537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239276" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAAAAACAGATAGAAAAATC : GAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTGATTTAGTTGA</gDNA_template>
            <first_frame> I  K  T  D  R  K  I  :  E  I  L  R  Y  Q  G  V  R  V  T  Y  *  Y  C  *  S  H  I  I  Y  L  I  G  T  F  D  F  V  L  N  D  Y  G  L  V  K  W  G  K  N  Q  V  D  L  V  E  I  *  V  L  V  C  L  V  C  K  T  M  L  *  V  I  K  D  C  H  D  N  *  F  *  M  R  M  L  L  A  L  I  *  L  </first_frame>
            <second_frame>  *  K  Q  I  E  K  S :   K  F  L  D  I  K  E  L  G  L  L  I  N  I  V  E  V  I  L  Y  T  *  L  G  H  L  I  L  C  *  M  I  M  D  *  L  S  G  E  K  T  K  L  T  W  L  R  F  K  F  W  Y  V  *  F  V  K  L  C  C  K  *  S  K  I  V  M  I  I  D  F  E  *  E  C  Y  *  P  *  F  S  * </second_frame>
            <third_frame>   K  N  R  *  K  N   : R  N  S  *  I  S  R  S  *  G  Y  L  L  I  L  L  K  S  Y  Y  I  L  N  W  D  I  *  F  C  V  K  *  L  W  T  S  *  V  G  K  K  P  S  *  L  G  *  D  L  S  F  G  M  F  S  L  *  N  Y  V  V  S  D  Q  R  L  S  *  *  L  I  L  N  E  N  V  I  S  L  D  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0219H08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="29505" PGL_stop="27532"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29196" e_stop="29006"/>
            <exon e_start="27940" e_stop="27532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.937"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="29196" e_stop="29006" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29005" i_stop="27941" i_length="1065"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="27940" e_stop="27532" e_length="409"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29196" stop="29006"/>
              <exon start="27940" stop="27802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469242" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27857" stop="27532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473294" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTCAAAAACTGCATACAACTATCATTCTCATCACCATTCATTCTCGCGAACACGACTGTATCAGCCATCTGTTTCGATAGCTTAATCACTGTTGGATAAACTTTCACACATGGTCCACAATGCTTCAATCCAACGTCGAGGACTATTAATTTTTTATCGATTTTGTGGTCTTGGATTACCTTTTCAAC : GTCTTACTTAAATTCACCATAAAAGGATAAATATTTTTCGAACGTTCACTATCTTTGCCTGCAAATTCAACCACAACTAGTCGATTTTTCGCATTTTTTAATGCTTCATCCAATTCCTCCATACTATTAACCTTTTGTACTCTTTCACTTTTAGCCACTTTTTTCTCAACATCAGGTGCTGCTGTTGCCTTTGTAATCAATAAGGGCTTGTTTGTTTTGAGGTTCTTGAAAATTGATTGTTTGGATTTCTCAAAAGGGAAATTGGAGTAAAGTGAAGGGCTAATTTTTGTAATTGAAGCTAGATTTGGAGAGGGTTTGAGCAAAAAATTTGTGAGAGTAGCCATAGATTAAAGATTTTTTTTTTCAAGAATAGCCACAAAAGGAAGAGGGATGTCAAGTTTAGAAGAAA</gDNA_template>
            <first_frame> S  F  K  N  C  I  Q  L  S  F  S  S  P  F  I  L  A  N  T  T  V  S  A  I  C  F  D  S  L  I  T  V  G  *  T  F  T  H  G  P  Q  C  F  N  P  T  S  R  T  I  N  F  L  S  I  L  W  S  W  I  T  F  S  T :   S  Y  L  N  S  P  *  K  D  K  Y  F  S  N  V  H  Y  L  C  L  Q  I  Q  P  Q  L  V  D  F  S  H  F  L  M  L  H  P  I  P  P  Y  Y  *  P  F  V  L  F  H  F  *  P  L  F  S  Q  H  Q  V  L  L  L  P  L  *  S  I  R  A  C  L  F  *  G  S  *  K  L  I  V  W  I  S  Q  K  G  N  W  S  K  V  K  G  *  F  L  *  L  K  L  D  L  E  R  V  *  A  K  N  L  *  E  *  P  *  I  K  D  F  F  F  Q  E  *  P  Q  K  E  E  G  C  Q  V  *  K  K </first_frame>
            <second_frame>  L  S  K  T  A  Y  N  Y  H  S  H  H  H  S  F  S  R  T  R  L  Y  Q  P  S  V  S  I  A  *  S  L  L  D  K  L  S  H  M  V  H  N  A  S  I  Q  R  R  G  L  L  I  F  Y  R  F  C  G  L  G  L  P  F  Q   : R  L  T  *  I  H  H  K  R  I  N  I  F  R  T  F  T  I  F  A  C  K  F  N  H  N  *  S  I  F  R  I  F  *  C  F  I  Q  F  L  H  T  I  N  L  L  Y  S  F  T  F  S  H  F  F  L  N  I  R  C  C  C  C  L  C  N  Q  *  G  L  V  C  F  E  V  L  E  N  *  L  F  G  F  L  K  R  E  I  G  V  K  *  R  A  N  F  C  N  *  S  *  I  W  R  G  F  E  Q  K  I  C  E  S  S  H  R  L  K  I  F  F  F  K  N  S  H  K  R  K  R  D  V  K  F  R  R   </second_frame>
            <third_frame>   F  Q  K  L  H  T  T  I  I  L  I  T  I  H  S  R  E  H  D  C  I  S  H  L  F  R  *  L  N  H  C  W  I  N  F  H  T  W  S  T  M  L  Q  S  N  V  E  D  Y  *  F  F  I  D  F  V  V  L  D  Y  L  F  N  :  V  L  L  K  F  T  I  K  G  *  I  F  F  E  R  S  L  S  L  P  A  N  S  T  T  T  S  R  F  F  A  F  F  N  A  S  S  N  S  S  I  L  L  T  F  C  T  L  S  L  L  A  T  F  F  S  T  S  G  A  A  V  A  F  V  I  N  K  G  L  F  V  L  R  F  L  K  I  D  C  L  D  F  S  K  G  K  L  E  *  S  E  G  L  I  F  V  I  E  A  R  F  G  E  G  L  S  K  K  F  V  R  V  A  I  D  *  R  F  F  F  S  R  I  A  T  K  G  R  G  M  S  S  L  E  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27910" stop="27671"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFFERSLSLPANSTTTSRFFAFFNASSNSSILLTFCTLSLLATFFSTSGAAVAFVINKGLFVLRFLKIDCLDFSKGKLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29505" e_stop="28976"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="29505" e_stop="28976" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29505" stop="28976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAATCAATTATCATGACAATCTTTGATCACTTACAACATAGTTTTACAAACTAAACATACCAAAACTTAAATCTCAACCAAGTCAACTTGGTTTTTTCCCCACTTAACTAGTCCATAATCATTTAACACAAAATCAAATGTCCCAATTAAGTATATAATATGACTTCAACAATATTAATAAGTAACCCTAACTCCTTGATATCTAAGAATTTCTCCAATAAGTTCACCTTTCCCAGAACCAACATACCTTCCACAAATTTCACCATCTCTTATAAACAAAAACGTAGGCACTTCAATAACATCCATGTCTTTCAAAAACTGCATACAACTATCATTCTCATCACCATTCATTCTCGCGAACACGACTGTATCAGCCATCTGTTTCGATAGCTTAATCACTGTTGGATAAACTTTCACACATGGTCCACAATGCTTCAATCCAACGTCGAGGACTATTAATTTTTTATCGATTTTGTGGTCTTGGATTACCTTTTCAACGTCTTCTCTGCTGTGGAGCTGCACTACTTC</gDNA_template>
            <first_frame> Q  N  Q  L  S  *  Q  S  L  I  T  Y  N  I  V  L  Q  T  K  H  T  K  T  *  I  S  T  K  S  T  W  F  F  P  H  L  T  S  P  *  S  F  N  T  K  S  N  V  P  I  K  Y  I  I  *  L  Q  Q  Y  *  *  V  T  L  T  P  *  Y  L  R  I  S  P  I  S  S  P  F  P  E  P  T  Y  L  P  Q  I  S  P  S  L  I  N  K  N  V  G  T  S  I  T  S  M  S  F  K  N  C  I  Q  L  S  F  S  S  P  F  I  L  A  N  T  T  V  S  A  I  C  F  D  S  L  I  T  V  G  *  T  F  T  H  G  P  Q  C  F  N  P  T  S  R  T  I  N  F  L  S  I  L  W  S  W  I  T  F  S  T  S  S  L  L  W  S  C  T  T   </first_frame>
            <second_frame>  K  I  N  Y  H  D  N  L  *  S  L  T  T  *  F  Y  K  L  N  I  P  K  L  K  S  Q  P  S  Q  L  G  F  F  P  T  *  L  V  H  N  H  L  T  Q  N  Q  M  S  Q  L  S  I  *  Y  D  F  N  N  I  N  K  *  P  *  L  L  D  I  *  E  F  L  Q  *  V  H  L  S  Q  N  Q  H  T  F  H  K  F  H  H  L  L  *  T  K  T  *  A  L  Q  *  H  P  C  L  S  K  T  A  Y  N  Y  H  S  H  H  H  S  F  S  R  T  R  L  Y  Q  P  S  V  S  I  A  *  S  L  L  D  K  L  S  H  M  V  H  N  A  S  I  Q  R  R  G  L  L  I  F  Y  R  F  C  G  L  G  L  P  F  Q  R  L  L  C  C  G  A  A  L  L  </second_frame>
            <third_frame>   K  S  I  I  M  T  I  F  D  H  L  Q  H  S  F  T  N  *  T  Y  Q  N  L  N  L  N  Q  V  N  L  V  F  S  P  L  N  *  S  I  I  I  *  H  K  I  K  C  P  N  *  V  Y  N  M  T  S  T  I  L  I  S  N  P  N  S  L  I  S  K  N  F  S  N  K  F  T  F  P  R  T  N  I  P  S  T  N  F  T  I  S  Y  K  Q  K  R  R  H  F  N  N  I  H  V  F  Q  K  L  H  T  T  I  I  L  I  T  I  H  S  R  E  H  D  C  I  S  H  L  F  R  *  L  N  H  C  W  I  N  F  H  T  W  S  T  M  L  Q  S  N  V  E  D  Y  *  F  F  I  D  F  V  V  L  D  Y  L  F  N  V  F  S  A  V  E  L  H  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29353" stop="29114"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYNMTSTILISNPNSLISKNFSNKFTFPRTNIPSTNFTISYKQKRRHFNNIHVFQKLHTTIILITIHSREHDCISHLFR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29304" stop="29095"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLRISPISSPFPEPTYLPQISPSLINKNVGTSITSMSFKNCIQLSFSSPFILANTTVSAICFDSLITVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="31062" PGL_stop="31975"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31062" e_stop="31975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="31062" e_stop="31975" e_length="914"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31062" stop="31975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31079" stop="31577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31081" stop="31328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31084" stop="31656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31086" stop="31757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31086" stop="31634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31090" stop="31577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31095" stop="31345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31098" stop="31724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31102" stop="31495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31112" stop="31472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31331" stop="31963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368092" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATCATTTCAACACCAAAAAAGCTAAGATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGCTAGTGGTCGTGAAGGTAATTTATCGAATTTCGATTGGAAAAACGTGCAGATTACACCTGATGATCATCGGAAATATTACTCCGATGATGATAGAGATGATTATCATGAAGCTGAAGATGAAGATGAGGTAATAATTCCATTTTCAGCTCCAATTTTAATAGGAAGAGATAATAGACCAAATTTTACTTTGGAGCCAAAAAAGGAAATTAATTTATGGAAAAGAAGAACTATGACTAAACCAAATCCTCTTCAATTGAAGAAATAAGTTTTGTTTAGTTGATTTAAGCTTAGAATTAGTTTACAAATCATCATGTTGTAAACTATGATGCAAGTGTAACAATATTTTCAAAGAATTCAACTATTCAAGTAATATAGTTTAGTTTAACATGTTTTATTTT</gDNA_template>
            <first_frame> *  S  F  Q  H  Q  K  S  *  D  I  F  L  F  F  I  S  T  P  T  K  K  Y  K  N  G  E  G  K  T  K  Q  A  K  E  K  H  D  F  E  I  F  T  K  S  S  S  S  N  R  Y  I  P  K  P  P  F  *  S  R  *  R  *  K  I  T  S  *  S  Q  R  I  F  W  S  N  Y  I  Y  N  S  S  *  S  E  N  *  K  I  E  *  R  N  K  G  R  R  T  N  I  T  K  S  F  V  H  W  S  D  Q  T  E  E  E  T  Q  *  T  Q  E  N  G  T  P  K  I  T  R  K  K  I  I  Q  F  *  K  Y  L  S  K  T  E  K  N  R  C  *  *  K  *  N  K  Y  E  M  R  G  T  K  Q  S  T  T  L  F  E  S  N  E  E  I  C  *  W  S  *  R  *  F  I  E  F  R  L  E  K  R  A  D  Y  T  *  *  S  S  E  I  L  L  R  *  *  *  R  *  L  S  *  S  *  R  *  R  *  G  N  N  S  I  F  S  S  N  F  N  R  K  R  *  *  T  K  F  Y  F  G  A  K  K  G  N  *  F  M  E  K  K  N  Y  D  *  T  K  S  S  S  I  E  E  I  S  F  V  *  L  I  *  A  *  N  *  F  T  N  H  H  V  V  N  Y  D  A  S  V  T  I  F  S  K  N  S  T  I  Q  V  I  *  F  S  L  T  C  F  I   </first_frame>
            <second_frame>  N  H  F  N  T  K  K  A  K  I  Y  F  C  S  S  Y  Q  H  Q  Q  K  S  T  K  M  E  K  E  K  P  S  K  P  K  K  N  M  I  L  K  F  L  P  K  A  A  A  A  T  V  I  F  Q  N  H  P  F  S  P  G  R  D  K  R  L  H  H  N  H  K  G  F  S  G  P  I  I  S  I  I  P  A  E  A  R  I  R  K  S  N  S  E  T  K  E  E  E  P  T  S  P  K  V  S  C  I  G  Q  I  K  Q  R  K  K  L  N  K  P  R  K  T  E  R  P  K  S  L  E  K  K  S  S  N  F  K  N  I  F  Q  R  R  R  K  T  D  V  D  K  N  E  T  N  M  R  C  E  V  Q  N  R  A  P  P  C  L  S  Q  M  R  K  Y  A  S  G  R  E  G  N  L  S  N  F  D  W  K  N  V  Q  I  T  P  D  D  H  R  K  Y  Y  S  D  D  D  R  D  D  Y  H  E  A  E  D  E  D  E  V  I  I  P  F  S  A  P  I  L  I  G  R  D  N  R  P  N  F  T  L  E  P  K  K  E  I  N  L  W  K  R  R  T  M  T  K  P  N  P  L  Q  L  K  K  *  V  L  F  S  *  F  K  L  R  I  S  L  Q  I  I  M  L  *  T  M  M  Q  V  *  Q  Y  F  Q  R  I  Q  L  F  K  *  Y  S  L  V  *  H  V  L  F  </second_frame>
            <third_frame>   I  I  S  T  P  K  K  L  R  Y  I  F  V  L  H  I  N  T  N  K  K  V  Q  K  W  R  R  K  N  Q  A  S  Q  R  K  T  *  F  *  N  F  Y  Q  K  Q  Q  Q  Q  P  L  Y  S  K  T  T  L  L  V  Q  V  E  I  K  D  Y  I  I  I  T  K  D  F  L  V  Q  L  Y  L  *  F  Q  L  K  R  E  L  E  N  R  I  A  K  Q  R  K  K  N  Q  H  H  Q  K  F  R  A  L  V  R  S  N  R  G  R  N  S  I  N  P  G  K  R  N  A  Q  N  H  S  K  K  N  H  P  I  L  K  I  S  F  K  D  G  E  K  P  M  L  I  K  M  K  Q  I  *  D  A  R  Y  K  T  E  H  H  P  V  *  V  K  *  G  N  M  L  V  V  V  K  V  I  Y  R  I  S  I  G  K  T  C  R  L  H  L  M  I  I  G  N  I  T  P  M  M  I  E  M  I  I  M  K  L  K  M  K  M  R  *  *  F  H  F  Q  L  Q  F  *  *  E  E  I  I  D  Q  I  L  L  W  S  Q  K  R  K  L  I  Y  G  K  E  E  L  *  L  N  Q  I  L  F  N  *  R  N  K  F  C  L  V  D  L  S  L  E  L  V  Y  K  S  S  C  C  K  L  *  C  K  C  N  N  I  F  K  E  F  N  Y  S  S  N  I  V  *  F  N  M  F  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31063" stop="31842"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHFNTKKAKIYFCSSYQHQQKSTKMEKEKPSKPKKNMILKFLPKAAAATVIFQNHPFSPGRDKRLHHNHKGFSGPIISIIPAEARIRKSNSETKEEEPTSPKVSCIGQIKQRKKLNKPRKTERPKSLEKKSSNFKNIFQRRRKTDVDKNETNMRCEVQNRAPPCLSQMRKYASGREGNLSNFDWKNVQITPDDHRKYYSDDDRDDYHEAEDEDEVIIPFSAPILIGRDNRPNFTLEPKKEINLWKRRTMTKPNPLQLKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="39566" PGL_stop="38783"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39566" e_stop="38783"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="39566" e_stop="38783" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39566" stop="38783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTTCTTTAATGATTTTAATTAAATAAAATAAATTATTATAGGGTTTAAAAGAAGTGTTGGGTGGGGTTTGGGGGATGGTAGATAGGTCAGTACTTAGTAATTAGCAGCAAATTACTGAACACAGCTGAATCCATGGCCGTCACGAAATCTATGGTACGCTTGAATTTCTGCCGCTATTTCCTCAGTTCATTCTCTTCTCAGAGCAAATTTAGATTCTTCAGCTCTGTTTCAACCTCAGAAATCGCCCTCTGCGGCGACGTCGGCGACGGTAAAGATGAAAATGGGGGACCCATATGCCGAACTGAGGTTTTATCTAAAGAAGAAGCTCAAATAGCTGAAAAGTTTCATTCTTTAATCAAAGACCATCATCGGAAAAACCCTACAGCTACTCCTACTTCAATTCCCTTAAACCCTAACATCACTTTCCCAACTCTCTCCTTCGATTTTTCTAGTATCTCCGATAACCGGTCCATTTCCCCGCCGGTCGTCAGCCGGGTTATCGAGAAATGCGGGTCGGTTCGGCATGGTATCCCATTTTCACAGGCTCTAGCTTTCTTCAATTGGGCTGCAGCTCGTGATTCGTGTGGATCTTTCTTAAACCCCGAGCCTTACAATGAAATGATTGATCTTGCTGGAAAGGTACGTCAATTTGATGTTGCTTGGCATTTGATTGATTCAATGAAACTGAAAAATATCAAAATCCCAATTGAAACTTTTTCGATTTTGATTCGTCGTTATGTTCGTGCTGGTCTTGCTTCCGAAGCTGTTCATACGTTTA</gDNA_template>
            <first_frame> F  F  F  L  *  *  F  *  L  N  K  I  N  Y  Y  R  V  *  K  K  C  W  V  G  F  G  G  W  *  I  G  Q  Y  L  V  I  S  S  K  L  L  N  T  A  E  S  M  A  V  T  K  S  M  V  R  L  N  F  C  R  Y  F  L  S  S  F  S  S  Q  S  K  F  R  F  F  S  S  V  S  T  S  E  I  A  L  C  G  D  V  G  D  G  K  D  E  N  G  G  P  I  C  R  T  E  V  L  S  K  E  E  A  Q  I  A  E  K  F  H  S  L  I  K  D  H  H  R  K  N  P  T  A  T  P  T  S  I  P  L  N  P  N  I  T  F  P  T  L  S  F  D  F  S  S  I  S  D  N  R  S  I  S  P  P  V  V  S  R  V  I  E  K  C  G  S  V  R  H  G  I  P  F  S  Q  A  L  A  F  F  N  W  A  A  A  R  D  S  C  G  S  F  L  N  P  E  P  Y  N  E  M  I  D  L  A  G  K  V  R  Q  F  D  V  A  W  H  L  I  D  S  M  K  L  K  N  I  K  I  P  I  E  T  F  S  I  L  I  R  R  Y  V  R  A  G  L  A  S  E  A  V  H  T  F  </first_frame>
            <second_frame>  F  F  F  F  N  D  F  N  *  I  K  *  I  I  I  G  F  K  R  S  V  G  W  G  L  G  D  G  R  *  V  S  T  *  *  L  A  A  N  Y  *  T  Q  L  N  P  W  P  S  R  N  L  W  Y  A  *  I  S  A  A  I  S  S  V  H  S  L  L  R  A  N  L  D  S  S  A  L  F  Q  P  Q  K  S  P  S  A  A  T  S  A  T  V  K  M  K  M  G  D  P  Y  A  E  L  R  F  Y  L  K  K  K  L  K  *  L  K  S  F  I  L  *  S  K  T  I  I  G  K  T  L  Q  L  L  L  L  Q  F  P  *  T  L  T  S  L  S  Q  L  S  P  S  I  F  L  V  S  P  I  T  G  P  F  P  R  R  S  S  A  G  L  S  R  N  A  G  R  F  G  M  V  S  H  F  H  R  L  *  L  S  S  I  G  L  Q  L  V  I  R  V  D  L  S  *  T  P  S  L  T  M  K  *  L  I  L  L  E  R  Y  V  N  L  M  L  L  G  I  *  L  I  Q  *  N  *  K  I  S  K  S  Q  L  K  L  F  R  F  *  F  V  V  M  F  V  L  V  L  L  P  K  L  F  I  R  L </second_frame>
            <third_frame>   F  F  S  L  M  I  L  I  K  *  N  K  L  L  *  G  L  K  E  V  L  G  G  V  W  G  M  V  D  R  S  V  L  S  N  *  Q  Q  I  T  E  H  S  *  I  H  G  R  H  E  I  Y  G  T  L  E  F  L  P  L  F  P  Q  F  I  L  F  S  E  Q  I  *  I  L  Q  L  C  F  N  L  R  N  R  P  L  R  R  R  R  R  R  *  R  *  K  W  G  T  H  M  P  N  *  G  F  I  *  R  R  S  S  N  S  *  K  V  S  F  F  N  Q  R  P  S  S  E  K  P  Y  S  Y  S  Y  F  N  S  L  K  P  *  H  H  F  P  N  S  L  L  R  F  F  *  Y  L  R  *  P  V  H  F  P  A  G  R  Q  P  G  Y  R  E  M  R  V  G  S  A  W  Y  P  I  F  T  G  S  S  F  L  Q  L  G  C  S  S  *  F  V  W  I  F  L  K  P  R  A  L  Q  *  N  D  *  S  C  W  K  G  T  S  I  *  C  C  L  A  F  D  *  F  N  E  T  E  K  Y  Q  N  P  N  *  N  F  F  D  F  D  S  S  L  C  S  C  W  S  C  F  R  S  C  S  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39479" stop="38784"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGQYLVISSKLLNTAESMAVTKSMVRLNFCRYFLSSFSSQSKFRFFSSVSTSEIALCGDVGDGKDENGGPICRTEVLSKEEAQIAEKFHSLIKDHHRKNPTATPTSIPLNPNITFPTLSFDFSSISDNRSISPPVVSRVIEKCGSVRHGIPFSQALAFFNWAAARDSCGSFLNPEPYNEMIDLAGKVRQFDVAWHLIDSMKLKNIKIPIETFSILIRRYVRAGLASEAVHTF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="40191" PGL_stop="43011"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40191" e_stop="40319"/>
            <exon e_start="41286" e_stop="41786"/>
            <exon e_start="42961" e_stop="43011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.555" e_score="0.884"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="0.960"/>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.884">
            <gDNA_exon_boundary e_start="40191" e_stop="40319" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.555">
            <gDNA_intron_boundary i_start="40320" i_stop="41285" i_length="966"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="41286" e_stop="41786" e_length="501"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="41787" i_stop="42960" i_length="1174"/>
          </intron>
          <exon e_serial="3" e_score="0.902">
            <gDNA_exon_boundary e_start="42961" e_stop="43011" e_length="51"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40191" stop="40319"/>
              <exon start="41286" stop="41786"/>
              <exon start="42961" stop="43011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559944" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACTATTTTCCAATTTCTCTTCCCTCCGTAGAATGCCTAATTGCCCAAAGTGTTGTTGCTAACAACAAACAGATTCTTTCTCTCTTTCATTAATTCCAGACAGTAATTTGCAGATTTCTATGAAACAG : CCAAGTTACTGAGGTGAAAGATGACTGCTAATATCCAAAAATTCCGAAATCTTTCAACTGCTATGAGCCATAGTTTCAAGTCAAGATGTCTCTTGCATCACTATCGTTTTCTGCACCATGGTCCAGACACTATGGAGGAATTATTGGATAGACATGTGGTCAAAAAGGAGAAGAGCCTTGATGATGATGAGAACGAGCTCCTCAATAGACAGCGACTCACTAGCAGCCGCCGTGAGGCTCTAAGTCTCTACCGAGATGTCATCCGTGCTACCCGGTTCTTCATGTGGGCCAACTCTCAAGGAAACCTGTGGCGTGATGTGCTCAGAGAAAATGTCCGAAAGGAGTTTGAGGAGGCACGATTTGAGAGAGATCCAGAAGTCATCACCAGGTTGCTTATTGGAGGCCGGGATGCTCTGCAAGCTGCTTTGGATAAACTTGCTGAGAAACAAAAGCAAGAAATCGAAAAGCAACATGGCAATTCAAATACTCCTTGATAGTCTG : GTGTTATGAGATGTACAGTGATAGTTCAACAACCTTAACAAGTGAAGCTCT</gDNA_template>
            <first_frame> T  L  F  S  N  F  S  S  L  R  R  M  P  N  C  P  K  C  C  C  *  Q  Q  T  D  S  F  S  L  S  L  I  P  D  S  N  L  Q  I  S  M  K  Q  :  P  S  Y  *  G  E  R  *  L  L  I  S  K  N  S  E  I  F  Q  L  L  *  A  I  V  S  S  Q  D  V  S  C  I  T  I  V  F  C  T  M  V  Q  T  L  W  R  N  Y  W  I  D  M  W  S  K  R  R  R  A  L  M  M  M  R  T  S  S  S  I  D  S  D  S  L  A  A  A  V  R  L  *  V  S  T  E  M  S  S  V  L  P  G  S  S  C  G  P  T  L  K  E  T  C  G  V  M  C  S  E  K  M  S  E  R  S  L  R  R  H  D  L  R  E  I  Q  K  S  S  P  G  C  L  L  E  A  G  M  L  C  K  L  L  W  I  N  L  L  R  N  K  S  K  K  S  K  S  N  M  A  I  Q  I  L  L  D  S  L  :  V  L  *  D  V  Q  *  *  F  N  N  L  N  K  *  S  S </first_frame>
            <second_frame>  H  Y  F  P  I  S  L  P  S  V  E  C  L  I  A  Q  S  V  V  A  N  N  K  Q  I  L  S  L  F  H  *  F  Q  T  V  I  C  R  F  L  *  N  S :   Q  V  T  E  V  K  D  D  C  *  Y  P  K  I  P  K  S  F  N  C  Y  E  P  *  F  Q  V  K  M  S  L  A  S  L  S  F  S  A  P  W  S  R  H  Y  G  G  I  I  G  *  T  C  G  Q  K  G  E  E  P  *  *  *  *  E  R  A  P  Q  *  T  A  T  H  *  Q  P  P  *  G  S  K  S  L  P  R  C  H  P  C  Y  P  V  L  H  V  G  Q  L  S  R  K  P  V  A  *  C  A  Q  R  K  C  P  K  G  V  *  G  G  T  I  *  E  R  S  R  S  H  H  Q  V  A  Y  W  R  P  G  C  S  A  S  C  F  G  *  T  C  *  E  T  K  A  R  N  R  K  A  T  W  Q  F  K  Y  S  L  I  V  W :   C  Y  E  M  Y  S  D  S  S  T  T  L  T  S  E  A   </second_frame>
            <third_frame>   T  I  F  Q  F  L  F  P  P  *  N  A  *  L  P  K  V  L  L  L  T  T  N  R  F  F  L  S  F  I  N  S  R  Q  *  F  A  D  F  Y  E  T   : A  K  L  L  R  *  K  M  T  A  N  I  Q  K  F  R  N  L  S  T  A  M  S  H  S  F  K  S  R  C  L  L  H  H  Y  R  F  L  H  H  G  P  D  T  M  E  E  L  L  D  R  H  V  V  K  K  E  K  S  L  D  D  D  E  N  E  L  L  N  R  Q  R  L  T  S  S  R  R  E  A  L  S  L  Y  R  D  V  I  R  A  T  R  F  F  M  W  A  N  S  Q  G  N  L  W  R  D  V  L  R  E  N  V  R  K  E  F  E  E  A  R  F  E  R  D  P  E  V  I  T  R  L  L  I  G  G  R  D  A  L  Q  A  A  L  D  K  L  A  E  K  Q  K  Q  E  I  E  K  Q  H  G  N  S  N  T  P  *  *  S   : G  V  M  R  C  T  V  I  V  Q  Q  P  *  Q  V  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41303" stop="41779"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMTANIQKFRNLSTAMSHSFKSRCLLHHYRFLHHGPDTMEELLDRHVVKKEKSLDDDENELLNRQRLTSSRREALSLYRDVIRATRFFMWANSQGNLWRDVLRENVRKEFEEARFERDPEVITRLLIGGRDALQAALDKLAEKQKQEIEKQHGNSNTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="43511" PGL_stop="46499"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43511" e_stop="43867"/>
            <exon e_start="44004" e_stop="44094"/>
            <exon e_start="44848" e_stop="44945"/>
            <exon e_start="45505" e_stop="45602"/>
            <exon e_start="46137" e_stop="46266"/>
            <exon e_start="46396" e_stop="46499"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.905" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.505" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.525" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43511" e_stop="43867" e_length="357"/>
          </exon>
          <intron i_serial="1" don_prob="0.905" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44004" e_stop="44094" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.971">
            <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44848" e_stop="44945" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.505" acc_prob="0.982">
            <gDNA_intron_boundary i_start="44946" i_stop="45504" i_length="559"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45505" e_stop="45602" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.933" acc_prob="0.525">
            <gDNA_intron_boundary i_start="45603" i_stop="46136" i_length="534"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46137" e_stop="46266" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.955" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46267" i_stop="46395" i_length="129"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="46396" e_stop="46499" e_length="104"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43511" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43517" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43519" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44945"/>
              <exon start="45505" stop="45532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43521" stop="43851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43523" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44945"/>
              <exon start="45505" stop="45602"/>
              <exon start="46137" stop="46235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43523" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44945"/>
              <exon start="45505" stop="45602"/>
              <exon start="46137" stop="46203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43523" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44945"/>
              <exon start="45505" stop="45592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43523" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44945"/>
              <exon start="45505" stop="45569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43523" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44945"/>
              <exon start="45505" stop="45544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43523" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44945"/>
              <exon start="45505" stop="45530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43523" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43523" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43523" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43523" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43523" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43523" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43523" stop="43806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43550" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43550" stop="43867"/>
              <exon start="44004" stop="44049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43556" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44945"/>
              <exon start="45505" stop="45602"/>
              <exon start="46137" stop="46266"/>
              <exon start="46396" stop="46437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43556" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44945"/>
              <exon start="45505" stop="45554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43556" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44945"/>
              <exon start="45505" stop="45524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43747" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44945"/>
              <exon start="45505" stop="45602"/>
              <exon start="46137" stop="46176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43747" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44945"/>
              <exon start="45505" stop="45552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43840" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44945"/>
              <exon start="45505" stop="45602"/>
              <exon start="46137" stop="46266"/>
              <exon start="46396" stop="46499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATACGATTTTCTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT : AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG : TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAG : GGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTATCAGAAATATTGAGAAGAGAATAGCAGATTATACATTCATTCCTGCAG : AACATGGAGAAGGTCTACAAGTCTTACATTATGAAGTTGGACAGAAGTATGAGCCTCATTATGACTACTTCCTTGATGACTTCAACACCAAAAATGGGGGCCAACGTATAGCTACTCTTCTCATGTATCT : ATCAGATGTTGAAGAAGGAGGTGAGACTGTTTTTCCAGCAGCAAAGGGAAACTTCAGTTCTAGTCCTGGGTGGAATGAGTTGTCAGAATGTGCCAAAGGGGGCC</gDNA_template>
            <first_frame> L  Y  D  F  L  N  F  S  D  S  F  F  P  F  D  E  L  S  P  G  K  A  T  P  L  P  G  N  T  L  I  *  *  T  N  A  A  L  N  L  I  N  L  G  F  R  *  R  L  *  *  S  N  G  E  G  E  V  E  S  A  S  R  E  E  I  I  D  S  G  F  S  A  F  D  A  S  D  A  N  S  C  A  S  N  A  S  R  S  W  H  F  *  S  S  C  W  F  *  *  *  V  V  F  D  C  S  G  S  H  Q  V  Q  A  V  Q  L  R  Y  :  R  G  R  *  R  T  G  E  K  R  G  T  M  D  R  D  L  I  V  G  A  S  C  I  C  L  P  Q  F  L   : V  Q  G  R  M  *  I  L  D  K  S  S  *  A  S  H  G  E  V  I  S  C  *  *  Q  D  R  S  E  *  R  *  Q  :  G  S  Y  K  F  G  N  V  F  E  E  G  A  R  *  N  Y  Q  K  Y  *  E  E  N  S  R  L  Y  I  H  S  C  R :   T  W  R  R  S  T  S  L  T  L  *  S  W  T  E  V  *  A  S  L  *  L  L  P  *  *  L  Q  H  Q  K  W  G  P  T  Y  S  Y  S  S  H  V  S  :  I  R  C  *  R  R  R  *  D  C  F  S  S  S  K  G  K  L  Q  F  *  S  W  V  E  *  V  V  R  M  C  Q  R  G   </first_frame>
            <second_frame>  Y  T  I  F  S  I  S  P  I  H  F  F  R  S  T  N  S  H  R  E  K  Q  L  H  C  R  E  I  L  L  F  D  K  R  M  L  H  *  I  *  S  I  *  G  F  G  E  D  C  S  E  A  M  A  K  G  R  L  N  R  H  Q  G  K  R  S  S  T  V  V  L  V  L  S  M  L  L  M  L  T  V  V  L  L  M  L  L  A  L  G  I  F  N  L  P  V  G  S  D  D  E  S  S  S  T  V  Q  D  H  I  K  F  K  R  F  N  L  D  I :   G  E  G  D  G  L  G  K  R  G  E  Q  W  T  E  I  L  S  W  E  P  R  A  F  V  Y  H  N  F  L  :  S  K  E  E  C  E  Y  L  I  N  Q  A  K  P  H  M  V  K  S  S  V  V  D  S  K  T  G  Q  S  K  D  S  R :   V  R  T  S  S  G  M  F  L  R  R  G  R  D  K  I  I  R  N  I  E  K  R  I  A  D  Y  T  F  I  P  A   : E  H  G  E  G  L  Q  V  L  H  Y  E  V  G  Q  K  Y  E  P  H  Y  D  Y  F  L  D  D  F  N  T  K  N  G  G  Q  R  I  A  T  L  L  M  Y  L :   S  D  V  E  E  G  G  E  T  V  F  P  A  A  K  G  N  F  S  S  S  P  G  W  N  E  L  S  E  C  A  K  G  G  </second_frame>
            <third_frame>   I  R  F  S  Q  F  L  R  F  I  F  S  V  R  R  T  L  T  G  K  S  N  S  I  A  G  K  Y  S  Y  L  I  N  E  C  C  I  K  F  D  Q  S  R  V  S  V  K  I  V  V  K  Q  W  R  R  G  G  *  I  G  I  K  G  R  D  H  R  Q  W  F  *  C  F  R  C  F  *  C  *  Q  L  C  F  *  C  F  S  L  L  A  F  L  I  F  L  L  V  L  M  M  S  R  L  R  L  F  R  I  T  S  S  S  S  G  S  T  *  I   : *  G  K  V  T  D  W  G  K  E  G  N  N  G  Q  R  S  Y  R  G  S  L  V  H  L  F  T  T  I  S  C :   P  R  K  N  V  N  T  *  *  I  K  L  S  L  T  W  *  S  H  Q  L  L  I  A  R  P  V  R  V  K  I  A   : G  F  V  Q  V  R  E  C  F  *  G  G  G  E  I  K  L  S  E  I  L  R  R  E  *  Q  I  I  H  S  F  L  Q  :  N  M  E  K  V  Y  K  S  Y  I  M  K  L  D  R  S  M  S  L  I  M  T  T  S  L  M  T  S  T  P  K  M  G  A  N  V  *  L  L  F  S  C  I   : Y  Q  M  L  K  K  E  V  R  L  F  F  Q  Q  Q  R  E  T  S  V  L  V  L  G  G  M  S  C  Q  N  V  P  K  G  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43641" stop="43867"/>
                    <exon start="44004" stop="44094"/>
                    <exon start="44848" stop="44945"/>
                    <exon start="45505" stop="45602"/>
                    <exon start="46137" stop="46266"/>
                    <exon start="46396" stop="46498"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFGEDCSEAMAKGRLNRHQGKRSSTVVLVLSMLLMLTVVLLMLLALGIFNLPVGSDDESSSTVQDHIKFKRFNLDIGEGDGLGKRGEQWTEILSWEPRAFVYHNFLSKEECEYLINQAKPHMVKSSVVDSKTGQSKDSRVRTSSGMFLRRGRDKIIRNIEKRIADYTFIPAEHGEGLQVLHYEVGQKYEPHYDYFLDDFNTKNGGQRIATLLMYLSDVEEGGETVFPAAKGNFSSSPGWNELSECAKGG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="48971" PGL_stop="48095"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48971" e_stop="48936"/>
            <exon e_start="48761" e_stop="48586"/>
            <exon e_start="48499" e_stop="48397"/>
            <exon e_start="48318" e_stop="48095"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.993" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.951"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48971" e_stop="48936" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="48935" i_stop="48762" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="48761" e_stop="48586" e_length="176"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.993">
            <gDNA_intron_boundary i_start="48585" i_stop="48500" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.951">
            <gDNA_exon_boundary e_start="48499" e_stop="48397" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48396" i_stop="48319" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="0.946">
            <gDNA_exon_boundary e_start="48318" e_stop="48095" e_length="224"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48971" stop="48936"/>
              <exon start="48761" stop="48586"/>
              <exon start="48499" stop="48397"/>
              <exon start="48318" stop="48095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612992" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGAATGGAGGCTAGAAACTGGTCGCACTCATCAG : ATACGTGCTCATGCGAAGCACCTAGGTATACCTCTTATGGGTGATGAAGTGTACGGAGGTACGAAGAACATGGCCCTTTCGCTTCTTCAGCCTAAAACACCACCAATGTTTCATGGGGAACTTTCACAATTGGTGTCTCAAATTGACAGACCTTGCCTCCATGCTTTAACCCTCGG : ATTTAGGCATCCATTCACAGGCGAGAATATACACTTTACGCGGTTACCCCCTCCTGATTTTGCTGAGATATTAAGCGAGCTACGTGCCATTAAAACTGAGAAG : GTTTTATGAATTCAACACAACATGATACATTGTTTTGATTGAATGTCCATGTAAAAGGAGCAGCAGATTCTTTGATACTAGATCAACTTAATTTTCTCATACGCTGACATCTCGAACACAGTTGTGATAATGTAATAGATAGCTATAATGAGTTTATTCTTTTCTTGTTATATTGTTAAATTACTCTCCTATATTTAATCAGCAGAAGTCGAGAAGGCGACACC</gDNA_template>
            <first_frame> V  E  W  R  L  E  T  G  R  T  H  Q  :  I  R  A  H  A  K  H  L  G  I  P  L  M  G  D  E  V  Y  G  G  T  K  N  M  A  L  S  L  L  Q  P  K  T  P  P  M  F  H  G  E  L  S  Q  L  V  S  Q  I  D  R  P  C  L  H  A  L  T  L  G :   F  R  H  P  F  T  G  E  N  I  H  F  T  R  L  P  P  P  D  F  A  E  I  L  S  E  L  R  A  I  K  T  E  K  :  V  L  *  I  Q  H  N  M  I  H  C  F  D  *  M  S  M  *  K  E  Q  Q  I  L  *  Y  *  I  N  L  I  F  S  Y  A  D  I  S  N  T  V  V  I  M  *  *  I  A  I  M  S  L  F  F  S  C  Y  I  V  K  L  L  S  Y  I  *  S  A  E  V  E  K  A  T   </first_frame>
            <second_frame>  L  N  G  G  *  K  L  V  A  L  I  R :   Y  V  L  M  R  S  T  *  V  Y  L  L  W  V  M  K  C  T  E  V  R  R  T  W  P  F  R  F  F  S  L  K  H  H  Q  C  F  M  G  N  F  H  N  W  C  L  K  L  T  D  L  A  S  M  L  *  P  S   : D  L  G  I  H  S  Q  A  R  I  Y  T  L  R  G  Y  P  L  L  I  L  L  R  Y  *  A  S  Y  V  P  L  K  L  R  R :   F  Y  E  F  N  T  T  *  Y  I  V  L  I  E  C  P  C  K  R  S  S  R  F  F  D  T  R  S  T  *  F  S  H  T  L  T  S  R  T  Q  L  *  *  C  N  R  *  L  *  *  V  Y  S  F  L  V  I  L  L  N  Y  S  P  I  F  N  Q  Q  K  S  R  R  R  H  </second_frame>
            <third_frame>   *  M  E  A  R  N  W  S  H  S  S   : D  T  C  S  C  E  A  P  R  Y  T  S  Y  G  *  *  S  V  R  R  Y  E  E  H  G  P  F  A  S  S  A  *  N  T  T  N  V  S  W  G  T  F  T  I  G  V  S  N  *  Q  T  L  P  P  C  F  N  P  R  :  I  *  A  S  I  H  R  R  E  Y  T  L  Y  A  V  T  P  S  *  F  C  *  D  I  K  R  A  T  C  H  *  N  *  E   : G  F  M  N  S  T  Q  H  D  T  L  F  *  L  N  V  H  V  K  G  A  A  D  S  L  I  L  D  Q  L  N  F  L  I  R  *  H  L  E  H  S  C  D  N  V  I  D  S  Y  N  E  F  I  L  F  L  L  Y  C  *  I  T  L  L  Y  L  I  S  R  S  R  E  G  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48971" stop="48936"/>
                    <exon start="48761" stop="48586"/>
                    <exon start="48499" stop="48397"/>
                    <exon start="48318" stop="48310"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAIKTEKVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="51158" PGL_stop="49372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51158" e_stop="50796"/>
            <exon e_start="50488" e_stop="50345"/>
            <exon e_start="49787" e_stop="49527"/>
            <exon e_start="49394" e_stop="49372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.993"/>
          <exon-intron don_prob="0.702" acc_prob="0.991" e_score="0.962"/>
          <exon-only e_score="0.870"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51158" e_stop="50796" e_length="363"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="50795" i_stop="50489" i_length="307"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="50488" e_stop="50345" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50344" i_stop="49788" i_length="557"/>
          </intron>
          <exon e_serial="3" e_score="0.962">
            <gDNA_exon_boundary e_start="49787" e_stop="49527" e_length="261"/>
          </exon>
          <intron i_serial="3" don_prob="0.702" acc_prob="0.991">
            <gDNA_intron_boundary i_start="49526" i_stop="49395" i_length="132"/>
          </intron>
          <exon e_serial="4" e_score="0.870">
            <gDNA_exon_boundary e_start="49394" e_stop="49372" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51158" stop="50796"/>
              <exon start="50488" stop="50421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51093" stop="50796"/>
              <exon start="50488" stop="50345"/>
              <exon start="49787" stop="49527"/>
              <exon start="49394" stop="49372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51087" stop="50796"/>
              <exon start="50488" stop="50345"/>
              <exon start="49787" stop="49754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51058" stop="50796"/>
              <exon start="50488" stop="50345"/>
              <exon start="49787" stop="49751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51058" stop="50796"/>
              <exon start="50488" stop="50345"/>
              <exon start="49787" stop="49754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAATAACGCTAATCCTTTCCATCCTCACGGGACATTGGCGATGGTAGCACTCAATACTACGTCGTTCTCTTTGCTTCCACAAAACCCAAAACCAATTTCTCTTTCTAGGGTTTCAAGCTTCATTTGCAGAGCATTTACCAAATTCCCCGGAGACTCAGATTCCGACGACTCACCGGATGAAATTCCCGGCCGGAGGTCCAATTACTCCGGCGTCAAGCTCGAAGAAACAGTTGATAGCAAAACCGGAAAGCTCCGACTAGATTCATGGGTCAGTTCCCGGATCGACGGAGTTAGTAGAGCTCGTGTTCAGTCTAGCATCCGCTCTGGTCTTGTTTCCGTCAATGGACGCGTCACTGATAAG : GTTTCACATATGGTAAAAGGTGGAGATAAGGTTGATTGTACAATAGCTGATTTGAAGCCTTTAAGAGCTGAACCAGAGGATATACCATTGGATATAGTGTATGAAGATGAGCATGTTCTTGTTGTTAACAAGCCTGCTCACATG : GTAGTTCATCCTGCACCAGGAAATGCTACTGGAACGCTTGTAAGTGGTATTCTTCATCACTGCAGTCTTCCTACTGTTTCATTTCCGGGTGAGGAAGTGCTTTCTGATGGGGAAGATGCTTCTGATGATGAGTTGAACATATTTTCTCCCAATCGAAGTCCTAATTATGATGACTCTTCTGTTATGTGTGAGTCATCTGTTAGGCCAGGAATTGTGCATAGGTTAGACAAAGGAACAAGTGGATTGCTTGTTGTAGCGAAG : AACGAGCATTCCCTTGCCGATCT</gDNA_template>
            <first_frame> E  N  N  A  N  P  F  H  P  H  G  T  L  A  M  V  A  L  N  T  T  S  F  S  L  L  P  Q  N  P  K  P  I  S  L  S  R  V  S  S  F  I  C  R  A  F  T  K  F  P  G  D  S  D  S  D  D  S  P  D  E  I  P  G  R  R  S  N  Y  S  G  V  K  L  E  E  T  V  D  S  K  T  G  K  L  R  L  D  S  W  V  S  S  R  I  D  G  V  S  R  A  R  V  Q  S  S  I  R  S  G  L  V  S  V  N  G  R  V  T  D  K  :  V  S  H  M  V  K  G  G  D  K  V  D  C  T  I  A  D  L  K  P  L  R  A  E  P  E  D  I  P  L  D  I  V  Y  E  D  E  H  V  L  V  V  N  K  P  A  H  M  :  V  V  H  P  A  P  G  N  A  T  G  T  L  V  S  G  I  L  H  H  C  S  L  P  T  V  S  F  P  G  E  E  V  L  S  D  G  E  D  A  S  D  D  E  L  N  I  F  S  P  N  R  S  P  N  Y  D  D  S  S  V  M  C  E  S  S  V  R  P  G  I  V  H  R  L  D  K  G  T  S  G  L  L  V  V  A  K  :  N  E  H  S  L  A  D   </first_frame>
            <second_frame>  R  I  T  L  I  L  S  I  L  T  G  H  W  R  W  *  H  S  I  L  R  R  S  L  C  F  H  K  T  Q  N  Q  F  L  F  L  G  F  Q  A  S  F  A  E  H  L  P  N  S  P  E  T  Q  I  P  T  T  H  R  M  K  F  P  A  G  G  P  I  T  P  A  S  S  S  K  K  Q  L  I  A  K  P  E  S  S  D  *  I  H  G  S  V  P  G  S  T  E  L  V  E  L  V  F  S  L  A  S  A  L  V  L  F  P  S  M  D  A  S  L  I  R :   F  H  I  W  *  K  V  E  I  R  L  I  V  Q  *  L  I  *  S  L  *  E  L  N  Q  R  I  Y  H  W  I  *  C  M  K  M  S  M  F  L  L  L  T  S  L  L  T  W :   *  F  I  L  H  Q  E  M  L  L  E  R  L  *  V  V  F  F  I  T  A  V  F  L  L  F  H  F  R  V  R  K  C  F  L  M  G  K  M  L  L  M  M  S  *  T  Y  F  L  P  I  E  V  L  I  M  M  T  L  L  L  C  V  S  H  L  L  G  Q  E  L  C  I  G  *  T  K  E  Q  V  D  C  L  L  *  R  R :   T  S  I  P  L  P  I  </second_frame>
            <third_frame>   E  *  R  *  S  F  P  S  S  R  D  I  G  D  G  S  T  Q  Y  Y  V  V  L  F  A  S  T  K  P  K  T  N  F  S  F  *  G  F  K  L  H  L  Q  S  I  Y  Q  I  P  R  R  L  R  F  R  R  L  T  G  *  N  S  R  P  E  V  Q  L  L  R  R  Q  A  R  R  N  S  *  *  Q  N  R  K  A  P  T  R  F  M  G  Q  F  P  D  R  R  S  *  *  S  S  C  S  V  *  H  P  L  W  S  C  F  R  Q  W  T  R  H  *  *   : G  F  T  Y  G  K  R  W  R  *  G  *  L  Y  N  S  *  F  E  A  F  K  S  *  T  R  G  Y  T  I  G  Y  S  V  *  R  *  A  C  S  C  C  *  Q  A  C  S  H   : G  S  S  S  C  T  R  K  C  Y  W  N  A  C  K  W  Y  S  S  S  L  Q  S  S  Y  C  F  I  S  G  *  G  S  A  F  *  W  G  R  C  F  *  *  *  V  E  H  I  F  S  Q  S  K  S  *  L  *  *  L  F  C  Y  V  *  V  I  C  *  A  R  N  C  A  *  V  R  Q  R  N  K  W  I  A  C  C  S  E   : E  R  A  F  P  C  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51158" stop="50796"/>
                    <exon start="50488" stop="50345"/>
                    <exon start="49787" stop="49527"/>
                    <exon start="49394" stop="49374"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENNANPFHPHGTLAMVALNTTSFSLLPQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDSKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSLAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50114" e_stop="49464"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="50114" e_stop="49464" e_length="651"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50114" stop="49464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACCACGGTGGAATCACCTACCTTAGTTCTTTTTTATGGTGTCTTGTTCGATAATCGGTATCTACATTATGTGCTCTTGGATGAGTTATTTTTTTGTCCATTTCTGGAGCACAAATTCATTAACCGTGTAGATACTCATTGTTAATCAGGAAGAGAACTTTGATAGATGAAGTTTGACGTAATTGTTCCATTCTGGATGTCAGTGTACTTGAACCTTTCCTTAGTTCTAGTAGTGATACAGATCGATTGAAACTGATAACGCGGATGTTTGAACTATTACCTGACTGTTCTGTAAAAGCTCAATGGGATTTGTTTTCTTCAATACAGGTAGTTCATCCTGCACCAGGAAATGCTACTGGAACGCTTGTAAGTGGTATTCTTCATCACTGCAGTCTTCCTACTGTTTCATTTCCGGGTGAGGAAGTGCTTTCTGATGGGGAAGATGCTTCTGATGATGAGTTGAACATATTTTCTCCCAATCGAAGTCCTAATTATGATGACTCTTCTGTTATGTGTGAGTCATCTGTTAGGCCAGGAATTGTGCATAGGTTAGACAAAGGAACAAGTGGATTGCTTGTTGTAGCGAAGGTGATTCCTACTTACAGGCTCTGAAGATGGGTAATTCATGTCTAGATATCTCCTTTACCTTTT</gDNA_template>
            <first_frame> D  H  G  G  I  T  Y  L  S  S  F  L  W  C  L  V  R  *  S  V  S  T  L  C  A  L  G  *  V  I  F  L  S  I  S  G  A  Q  I  H  *  P  C  R  Y  S  L  L  I  R  K  R  T  L  I  D  E  V  *  R  N  C  S  I  L  D  V  S  V  L  E  P  F  L  S  S  S  S  D  T  D  R  L  K  L  I  T  R  M  F  E  L  L  P  D  C  S  V  K  A  Q  W  D  L  F  S  S  I  Q  V  V  H  P  A  P  G  N  A  T  G  T  L  V  S  G  I  L  H  H  C  S  L  P  T  V  S  F  P  G  E  E  V  L  S  D  G  E  D  A  S  D  D  E  L  N  I  F  S  P  N  R  S  P  N  Y  D  D  S  S  V  M  C  E  S  S  V  R  P  G  I  V  H  R  L  D  K  G  T  S  G  L  L  V  V  A  K  V  I  P  T  Y  R  L  *  R  W  V  I  H  V  *  I  S  P  L  P  F </first_frame>
            <second_frame>  T  T  V  E  S  P  T  L  V  L  F  Y  G  V  L  F  D  N  R  Y  L  H  Y  V  L  L  D  E  L  F  F  C  P  F  L  E  H  K  F  I  N  R  V  D  T  H  C  *  S  G  R  E  L  *  *  M  K  F  D  V  I  V  P  F  W  M  S  V  Y  L  N  L  S  L  V  L  V  V  I  Q  I  D  *  N  *  *  R  G  C  L  N  Y  Y  L  T  V  L  *  K  L  N  G  I  C  F  L  Q  Y  R  *  F  I  L  H  Q  E  M  L  L  E  R  L  *  V  V  F  F  I  T  A  V  F  L  L  F  H  F  R  V  R  K  C  F  L  M  G  K  M  L  L  M  M  S  *  T  Y  F  L  P  I  E  V  L  I  M  M  T  L  L  L  C  V  S  H  L  L  G  Q  E  L  C  I  G  *  T  K  E  Q  V  D  C  L  L  *  R  R  *  F  L  L  T  G  S  E  D  G  *  F  M  S  R  Y  L  L  Y  L   </second_frame>
            <third_frame>   P  R  W  N  H  L  P  *  F  F  F  M  V  S  C  S  I  I  G  I  Y  I  M  C  S  W  M  S  Y  F  F  V  H  F  W  S  T  N  S  L  T  V  *  I  L  I  V  N  Q  E  E  N  F  D  R  *  S  L  T  *  L  F  H  S  G  C  Q  C  T  *  T  F  P  *  F  *  *  *  Y  R  S  I  E  T  D  N  A  D  V  *  T  I  T  *  L  F  C  K  S  S  M  G  F  V  F  F  N  T  G  S  S  S  C  T  R  K  C  Y  W  N  A  C  K  W  Y  S  S  S  L  Q  S  S  Y  C  F  I  S  G  *  G  S  A  F  *  W  G  R  C  F  *  *  *  V  E  H  I  F  S  Q  S  K  S  *  L  *  *  L  F  C  Y  V  *  V  I  C  *  A  R  N  C  A  *  V  R  Q  R  N  K  W  I  A  C  C  S  E  G  D  S  Y  L  Q  A  L  K  M  G  N  S  C  L  D  I  S  F  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49937" stop="49503"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNCSILDVSVLEPFLSSSSDTDRLKLITRMFELLPDCSVKAQWDLFSSIQVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKVIPTYRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="49720" PGL_stop="50424"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49720" e_stop="50424"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49720" e_stop="50424" e_length="705"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49720" stop="50424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49720" stop="50381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACTGCAGTGATGAAGAATACCACTTACAAGCGTTCCAGTAGCATTTCCTGGTGCAGGATGAACTACCTGTATTGAAGAAAACAAATCCCATTGAGCTTTTACAGAACAGTCAGGTAATAGTTCAAACATCCGCGTTATCAGTTTCAATCGATCTGTATCACTACTAGAACTAAGGAAAGGTTCAAGTACACTGACATCCAGAATGGAACAATTACGTCAAACTTCATCTATCAAAGTTCTCTTCCTGATTAACAATGAGTATCTACACGGTTAATGAATTTGTGCTCCAGAAATGGACAAAAAAATAACTCATCCAAGAGCACATAATGTAGATACCGATTATCGAACAAGACACCATAAAAAAGAACTAAGGTAGGTGATTCCACCGTGGTCCAATGCTTGAATATCTCCATTTACATGCTAAAAAAGCAAATTGATGTTCCATCAAAGATAGATGCACAACAAGCCCAAAACAACTACTTTCTCCGTTTCAATTTGTTTGTTTTACTTTCCTTTTTAGTCTGTTTCAAAAAGTGTTCTTTCTTTTATTCACCACCTCTGTGACAAGTCAAAATCAAACAAACAAATTAAAACGGAGGAAAGTAGATTATTCTAGAACTTACCATGTGAGCAGGCTTGTTAACAACAAGAACATGCTCATCTTCATACACTATATCCAATGGTATATCCTCTGGTTCAGCTC</gDNA_template>
            <first_frame> R  L  Q  *  *  R  I  P  L  T  S  V  P  V  A  F  P  G  A  G  *  T  T  C  I  E  E  N  K  S  H  *  A  F  T  E  Q  S  G  N  S  S  N  I  R  V  I  S  F  N  R  S  V  S  L  L  E  L  R  K  G  S  S  T  L  T  S  R  M  E  Q  L  R  Q  T  S  S  I  K  V  L  F  L  I  N  N  E  Y  L  H  G  *  *  I  C  A  P  E  M  D  K  K  I  T  H  P  R  A  H  N  V  D  T  D  Y  R  T  R  H  H  K  K  E  L  R  *  V  I  P  P  W  S  N  A  *  I  S  P  F  T  C  *  K  S  K  L  M  F  H  Q  R  *  M  H  N  K  P  K  T  T  T  F  S  V  S  I  C  L  F  Y  F  P  F  *  S  V  S  K  S  V  L  S  F  I  H  H  L  C  D  K  S  K  S  N  K  Q  I  K  T  E  E  S  R  L  F  *  N  L  P  C  E  Q  A  C  *  Q  Q  E  H  A  H  L  H  T  L  Y  P  M  V  Y  P  L  V  Q  L </first_frame>
            <second_frame>  D  C  S  D  E  E  Y  H  L  Q  A  F  Q  *  H  F  L  V  Q  D  E  L  P  V  L  K  K  T  N  P  I  E  L  L  Q  N  S  Q  V  I  V  Q  T  S  A  L  S  V  S  I  D  L  Y  H  Y  *  N  *  G  K  V  Q  V  H  *  H  P  E  W  N  N  Y  V  K  L  H  L  S  K  F  S  S  *  L  T  M  S  I  Y  T  V  N  E  F  V  L  Q  K  W  T  K  K  *  L  I  Q  E  H  I  M  *  I  P  I  I  E  Q  D  T  I  K  K  N  *  G  R  *  F  H  R  G  P  M  L  E  Y  L  H  L  H  A  K  K  A  N  *  C  S  I  K  D  R  C  T  T  S  P  K  Q  L  L  S  P  F  Q  F  V  C  F  T  F  L  F  S  L  F  Q  K  V  F  F  L  L  F  T  T  S  V  T  S  Q  N  Q  T  N  K  L  K  R  R  K  V  D  Y  S  R  T  Y  H  V  S  R  L  V  N  N  K  N  M  L  I  F  I  H  Y  I  Q  W  Y  I  L  W  F  S   </second_frame>
            <third_frame>   T  A  V  M  K  N  T  T  Y  K  R  S  S  S  I  S  W  C  R  M  N  Y  L  Y  *  R  K  Q  I  P  L  S  F  Y  R  T  V  R  *  *  F  K  H  P  R  Y  Q  F  Q  S  I  C  I  T  T  R  T  K  E  R  F  K  Y  T  D  I  Q  N  G  T  I  T  S  N  F  I  Y  Q  S  S  L  P  D  *  Q  *  V  S  T  R  L  M  N  L  C  S  R  N  G  Q  K  N  N  S  S  K  S  T  *  C  R  Y  R  L  S  N  K  T  P  *  K  R  T  K  V  G  D  S  T  V  V  Q  C  L  N  I  S  I  Y  M  L  K  K  Q  I  D  V  P  S  K  I  D  A  Q  Q  A  Q  N  N  Y  F  L  R  F  N  L  F  V  L  L  S  F  L  V  C  F  K  K  C  S  F  F  Y  S  P  P  L  *  Q  V  K  I  K  Q  T  N  *  N  G  G  K  *  I  I  L  E  L  T  M  *  A  G  L  L  T  T  R  T  C  S  S  S  Y  T  I  S  N  G  I  S  S  G  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50159" stop="50422"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSIKDRCTTSPKQLLSPFQFVCFTFLFSLFQKVFFLLFTTSVTSQNQTNKLKRRKVDYSRTYHVSRLVNNKNMLIFIHYIQWYILWFS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50082" stop="50285"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRTKVGDSTVVQCLNISIYMLKKQIDVPSKIDAQQAQNNYFLRFNLFVLLSFLVCFKKCSFFYSPPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="50678" PGL_stop="51227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50678" e_stop="51227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="50678" e_stop="51227" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50678" stop="51227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCTCTTAAACTCCGTATCAAGCTTAAAACCAGTAAAACAAATATTATTGGAAGATGGATTATTATTTCAAATTCTTTTTTACTACATATATAATTTTGAGTGTAAAGCAGTGGGACCTTATCAGTGACGCGTCCATTGACGGAAACAAGACCAGAGCGGATGCTAGACTGAACACGAGCTCTACTAACTCCGTCGATCCGGGAACTGACCCATGAATCTAGTCGGAGCTTTCCGGTTTTGCTATCAACTGTTTCTTCGAGCTTGACGCCGGAGTAATTGGACCTCCGGCCGGGAATTTCATCCGGTGAGTCGTCGGAATCTGAGTCTCCGGGGAATTTGGTAAATGCTCTGCAAATGAAGCTTGAAACCCTAGAAAGAGAAATTGGTTTTGGGTTTTGTGGAAGCAAAGAGAACGACGTAGTATTGAGTGCTACCATCGCCAATGTCCCGTGAGGATGGAAAGGATTAGCGTTATTCTCAGAACAGGTGAAAAAGAAGATATGAAACAAAGCGGTGTCGTTTAGATAGAGGTTTTTTTTTTTCTTTTA</gDNA_template>
            <first_frame> Y  L  L  N  S  V  S  S  L  K  P  V  K  Q  I  L  L  E  D  G  L  L  F  Q  I  L  F  Y  Y  I  Y  N  F  E  C  K  A  V  G  P  Y  Q  *  R  V  H  *  R  K  Q  D  Q  S  G  C  *  T  E  H  E  L  Y  *  L  R  R  S  G  N  *  P  M  N  L  V  G  A  F  R  F  C  Y  Q  L  F  L  R  A  *  R  R  S  N  W  T  S  G  R  E  F  H  P  V  S  R  R  N  L  S  L  R  G  I  W  *  M  L  C  K  *  S  L  K  P  *  K  E  K  L  V  L  G  F  V  E  A  K  R  T  T  *  Y  *  V  L  P  S  P  M  S  R  E  D  G  K  D  *  R  Y  S  Q  N  R  *  K  R  R  Y  E  T  K  R  C  R  L  D  R  G  F  F  F  S  F  </first_frame>
            <second_frame>  T  S  *  T  P  Y  Q  A  *  N  Q  *  N  K  Y  Y  W  K  M  D  Y  Y  F  K  F  F  F  T  T  Y  I  I  L  S  V  K  Q  W  D  L  I  S  D  A  S  I  D  G  N  K  T  R  A  D  A  R  L  N  T  S  S  T  N  S  V  D  P  G  T  D  P  *  I  *  S  E  L  S  G  F  A  I  N  C  F  F  E  L  D  A  G  V  I  G  P  P  A  G  N  F  I  R  *  V  V  G  I  *  V  S  G  E  F  G  K  C  S  A  N  E  A  *  N  P  R  K  R  N  W  F  W  V  L  W  K  Q  R  E  R  R  S  I  E  C  Y  H  R  Q  C  P  V  R  M  E  R  I  S  V  I  L  R  T  G  E  K  E  D  M  K  Q  S  G  V  V  *  I  E  V  F  F  F  L  L </second_frame>
            <third_frame>   P  L  K  L  R  I  K  L  K  T  S  K  T  N  I  I  G  R  W  I  I  I  S  N  S  F  L  L  H  I  *  F  *  V  *  S  S  G  T  L  S  V  T  R  P  L  T  E  T  R  P  E  R  M  L  D  *  T  R  A  L  L  T  P  S  I  R  E  L  T  H  E  S  S  R  S  F  P  V  L  L  S  T  V  S  S  S  L  T  P  E  *  L  D  L  R  P  G  I  S  S  G  E  S  S  E  S  E  S  P  G  N  L  V  N  A  L  Q  M  K  L  E  T  L  E  R  E  I  G  F  G  F  C  G  S  K  E  N  D  V  V  L  S  A  T  I  A  N  V  P  *  G  W  K  G  L  A  L  F  S  E  Q  V  K  K  K  I  *  N  K  A  V  S  F  R  *  R  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0219H08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="56496" PGL_stop="53430"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56496" e_stop="55585"/>
            <exon e_start="53548" e_stop="53430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.981" e_score="0.996"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="56496" e_stop="55585" e_length="912"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.981">
            <gDNA_intron_boundary i_start="55584" i_stop="53549" i_length="2036"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="53548" e_stop="53430" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56496" stop="56319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56495" stop="56319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56326" stop="55825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56265" stop="55585"/>
              <exon start="53548" stop="53430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56259" stop="55655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56169" stop="55821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56169" stop="55833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325573" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATCCAAAAGTGACACGGCAAAGCTAAAGCAAAGCACCTCTAAAAGCTAAACAGTCTGTTGCAAAAATCATAAAAATCTCCATCAAAAACATTCTCAATATGAATTAAAATACTCAACACCCTTTAAATATCCATCAAAATCCACAAATCTCTCTCTCTCAAACCAAAAAAAAAAATAAAAAAATCTCCTTTTTCTCAAAAAAAATAAAAATAAAAATAAAATCATCAATGGGTCTCTGTTTTACTAAAGAATGTTGTTGTCCACATTATAGAGATGTACCAATTTCATCATCCCCTGAATATAATCCAATTCCAGTATCATCTCAAAAATATCCACAAAATTCGATACCAGAACCAACACCAGCACCAGCACCAGCATCGACTTTTATGCCAAATCAAATTGGTCCAATATTAGGAAAACCATATGTAGACATAAAAACACTATATGATCTTGATAAAGAATTGGGAAGAGGTCAATTTGGGATAACCTATCTCTGTAGTGATAAATCAAGTGGATTGAAATACGCGTGTAAATCGATTTCAAGGAGGAAATTGGTAACACAAAAGGATATTGAAGATGTTAGAAGGGAAGTTACAATACTTCAATATTTAAGTGGACAACCAAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAAACAATCTACATTTGGTTATGGAGTTGTGTAGTGGTGGTGAACTTTTTGATAGGATTACAGCAAAAGGGAATTATTCAGAGAAAGAAGCTGCAAGAATTGGAAGACAAATAGTGAATGTGGTTCATGTTTGTCATTTTATGGGAGTTATGCATAGAGATCTTAAACCGGAAAATTTCTTGATGGTTAGTAAAGATGATGATTCTCCATTGAAGGCTACTGATTTTGGGCTCTCTGTTTTCATTGAAGAAG : GAAAAATTTACAAGGATATTGTTGGAAGTGCATATTATGTTGCCCCTGAGGTGTTGAAGCGCAAGTATGGGAAGGAGATAGATGTGTGGAGTGCTGGAGTTATTTTGTACATTTTATTA</gDNA_template>
            <first_frame> N  I  Q  K  *  H  G  K  A  K  A  K  H  L  *  K  L  N  S  L  L  Q  K  S  *  K  S  P  S  K  T  F  S  I  *  I  K  I  L  N  T  L  *  I  S  I  K  I  H  K  S  L  S  L  K  P  K  K  K  I  K  K  S  P  F  S  Q  K  K  *  K  *  K  *  N  H  Q  W  V  S  V  L  L  K  N  V  V  V  H  I  I  E  M  Y  Q  F  H  H  P  L  N  I  I  Q  F  Q  Y  H  L  K  N  I  H  K  I  R  Y  Q  N  Q  H  Q  H  Q  H  Q  H  R  L  L  C  Q  I  K  L  V  Q  Y  *  E  N  H  M  *  T  *  K  H  Y  M  I  L  I  K  N  W  E  E  V  N  L  G  *  P  I  S  V  V  I  N  Q  V  D  *  N  T  R  V  N  R  F  Q  G  G  N  W  *  H  K  R  I  L  K  M  L  E  G  K  L  Q  Y  F  N  I  *  V  D  N  Q  I  L  L  N  L  K  V  L  M  R  I  K  T  I  Y  I  W  L  W  S  C  V  V  V  V  N  F  L  I  G  L  Q  Q  K  G  I  I  Q  R  K  K  L  Q  E  L  E  D  K  *  *  M  W  F  M  F  V  I  L  W  E  L  C  I  E  I  L  N  R  K  I  S  *  W  L  V  K  M  M  I  L  H  *  R  L  L  I  L  G  S  L  F  S  L  K  K  :  E  K  F  T  R  I  L  L  E  V  H  I  M  L  P  L  R  C  *  S  A  S  M  G  R  R  *  M  C  G  V  L  E  L  F  C  T  F  Y   </first_frame>
            <second_frame>  I  S  K  S  D  T  A  K  L  K  Q  S  T  S  K  S  *  T  V  C  C  K  N  H  K  N  L  H  Q  K  H  S  Q  Y  E  L  K  Y  S  T  P  F  K  Y  P  S  K  S  T  N  L  S  L  S  N  Q  K  K  K  *  K  N  L  L  F  L  K  K  N  K  N  K  N  K  I  I  N  G  S  L  F  Y  *  R  M  L  L  S  T  L  *  R  C  T  N  F  I  I  P  *  I  *  S  N  S  S  I  I  S  K  I  S  T  K  F  D  T  R  T  N  T  S  T  S  T  S  I  D  F  Y  A  K  S  N  W  S  N  I  R  K  T  I  C  R  H  K  N  T  I  *  S  *  *  R  I  G  K  R  S  I  W  D  N  L  S  L  *  *  *  I  K  W  I  E  I  R  V  *  I  D  F  K  E  E  I  G  N  T  K  G  Y  *  R  C  *  K  G  S  Y  N  T  S  I  F  K  W  T  T  K  Y  C  *  I  *  R  C  L  *  G  *  K  Q  S  T  F  G  Y  G  V  V  *  W  W  *  T  F  *  *  D  Y  S  K  R  E  L  F  R  E  R  S  C  K  N  W  K  T  N  S  E  C  G  S  C  L  S  F  Y  G  S  Y  A  *  R  S  *  T  G  K  F  L  D  G  *  *  R  *  *  F  S  I  E  G  Y  *  F  W  A  L  C  F  H  *  R  R :   K  N  L  Q  G  Y  C  W  K  C  I  L  C  C  P  *  G  V  E  A  Q  V  W  E  G  D  R  C  V  E  C  W  S  Y  F  V  H  F  I  </second_frame>
            <third_frame>   Y  P  K  V  T  R  Q  S  *  S  K  A  P  L  K  A  K  Q  S  V  A  K  I  I  K  I  S  I  K  N  I  L  N  M  N  *  N  T  Q  H  P  L  N  I  H  Q  N  P  Q  I  S  L  S  Q  T  K  K  K  N  K  K  I  S  F  F  S  K  K  I  K  I  K  I  K  S  S  M  G  L  C  F  T  K  E  C  C  C  P  H  Y  R  D  V  P  I  S  S  S  P  E  Y  N  P  I  P  V  S  S  Q  K  Y  P  Q  N  S  I  P  E  P  T  P  A  P  A  P  A  S  T  F  M  P  N  Q  I  G  P  I  L  G  K  P  Y  V  D  I  K  T  L  Y  D  L  D  K  E  L  G  R  G  Q  F  G  I  T  Y  L  C  S  D  K  S  S  G  L  K  Y  A  C  K  S  I  S  R  R  K  L  V  T  Q  K  D  I  E  D  V  R  R  E  V  T  I  L  Q  Y  L  S  G  Q  P  N  I  V  E  F  K  G  A  Y  E  D  K  N  N  L  H  L  V  M  E  L  C  S  G  G  E  L  F  D  R  I  T  A  K  G  N  Y  S  E  K  E  A  A  R  I  G  R  Q  I  V  N  V  V  H  V  C  H  F  M  G  V  M  H  R  D  L  K  P  E  N  F  L  M  V  S  K  D  D  D  S  P  L  K  A  T  D  F  G  L  S  V  F  I  E  E   : G  K  I  Y  K  D  I  V  G  S  A  Y  Y  V  A  P  E  V  L  K  R  K  Y  G  K  E  I  D  V  W  S  A  G  V  I  L  Y  I  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56386" stop="55585"/>
                    <exon start="53548" stop="53430"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTQHPLNIHQNPQISLSQTKKKNKKISFFSKKIKIKIKSSMGLCFTKECCCPHYRDVPISSSPEYNPIPVSSQKYPQNSIPEPTPAPAPASTFMPNQIGPILGKPYVDIKTLYDLDKELGRGQFGITYLCSDKSSGLKYACKSISRRKLVTQKDIEDVRREVTILQYLSGQPNIVEFKGAYEDKNNLHLVMELCSGGELFDRITAKGNYSEKEAARIGRQIVNVVHVCHFMGVMHRDLKPENFLMVSKDDDSPLKATDFGLSVFIEEGKIYKDIVGSAYYVAPEVLKRKYGKEIDVWSAGVILYILL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="60969" PGL_stop="60130"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60969" e_stop="60130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="60969" e_stop="60130" e_length="840"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60969" stop="60448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60969" stop="60620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60554" stop="60130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAATATAATTTTCTGAATTCCCTAATTAGAATTTTTTATTGCATTCGATCTAAGGATTAAGGGTGTAGTCTATTAATCAATAATATACATTATGTATTATGATTCTCAAGTGACAAAAAATAGTTAGTAATTCTTTTTTATGTGTTTAAGCTTTAGTAAATAGAGTTATCTGTTACGTATGATAATAATAAGTAACAAGTATGCAATAAAATTAGTCAAAATATTGTTGGGAAAGACAAGACACTAACAAAGAATGCCTGACAGGATAACAGCGGAAGAATACCCAAGTCTATACTTTCCCTTTTCGATTTGAACCAAGAGAAAACAAACAACCACAAGCAATATGATAGTAAGGCAGCAAGTAATTCAACCAAACAAATATAACAAGACAATAATAAACCAATCACACAAGACATCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTCTTTTAGCTGCTGAAAAACTCTCTCTGAAAAAT</gDNA_template>
            <first_frame> F  N  I  I  F  *  I  P  *  L  E  F  F  I  A  F  D  L  R  I  K  G  V  V  Y  *  S  I  I  Y  I  M  Y  Y  D  S  Q  V  T  K  N  S  *  *  F  F  F  M  C  L  S  F  S  K  *  S  Y  L  L  R  M  I  I  I  S  N  K  Y  A  I  K  L  V  K  I  L  L  G  K  T  R  H  *  Q  R  M  P  D  R  I  T  A  E  E  Y  P  S  L  Y  F  P  F  S  I  *  T  K  R  K  Q  T  T  T  S  N  M  I  V  R  Q  Q  V  I  Q  P  N  K  Y  N  K  T  I  I  N  Q  S  H  K  T  S  R  F  T  W  K  T  L  R  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  H  K  T  K  C  Q  T  T  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  A  K  S  P  I  S  Q  L  L  F  T  T  A  K  L  K  L  Q  T  T  K  S  N  S  V  S  S  *  S  K  I  E  M  K  I  I  C  C  P  K  I  S  S  I  G  Q  E  T  K  R  E  S  Q  F  E  V  G  C  Y  G  W  I  F  D  C  E  F  L  S  F  F  S  L  L  A  A  E  K  L  S  L  K  N </first_frame>
            <second_frame>  L  I  *  F  S  E  F  P  N  *  N  F  L  L  H  S  I  *  G  L  R  V  *  S  I  N  Q  *  Y  T  L  C  I  M  I  L  K  *  Q  K  I  V  S  N  S  F  L  C  V  *  A  L  V  N  R  V  I  C  Y  V  *  *  *  *  V  T  S  M  Q  *  N  *  S  K  Y  C  W  E  R  Q  D  T  N  K  E  C  L  T  G  *  Q  R  K  N  T  Q  V  Y  T  F  P  F  R  F  E  P  R  E  N  K  Q  P  Q  A  I  *  *  *  G  S  K  *  F  N  Q  T  N  I  T  R  Q  *  *  T  N  H  T  R  H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  A  T  K  Q  S  V  K  Q  R  A  T  T  K  *  D  C  T  K  S  R  E  L  K  E  Q  N  H  Q  F  R  S  Y  C  S  R  Q  Q  N  *  S  C  R  P  P  N  P  T  L  S  V  P  N  Q  R  L  R  *  R  *  Y  A  V  Q  K  S  A  Q  S  D  K  K  R  S  G  N  R  N  L  K  L  V  V  M  A  G  F  L  T  A  N  F  S  L  F  S  L  F  *  L  L  K  N  S  L  *  K   </second_frame>
            <third_frame>   *  Y  N  F  L  N  S  L  I  R  I  F  Y  C  I  R  S  K  D  *  G  C  S  L  L  I  N  N  I  H  Y  V  L  *  F  S  S  D  K  K  *  L  V  I  L  F  Y  V  F  K  L  *  *  I  E  L  S  V  T  Y  D  N  N  K  *  Q  V  C  N  K  I  S  Q  N  I  V  G  K  D  K  T  L  T  K  N  A  *  Q  D  N  S  G  R  I  P  K  S  I  L  S  L  F  D  L  N  Q  E  K  T  N  N  H  K  Q  Y  D  S  K  A  A  S  N  S  T  K  Q  I  *  Q  D  N  N  K  P  I  T  Q  D  I  K  I  Y  V  E  N  P  S  M  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  W  P  Q  N  K  V  S  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  V  H  D  S  K  T  E  A  A  D  H  Q  I  Q  L  C  Q  F  L  I  K  D  *  D  E  D  N  M  L  S  K  N  Q  L  N  R  T  R  N  E  A  G  I  A  I  *  S  W  L  L  W  L  D  F  *  L  R  I  S  L  F  F  L  S  F  S  C  *  K  T  L  S  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0219H08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="64375" PGL_stop="61563"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64375" e_stop="64051"/>
            <exon e_start="63176" e_stop="62670"/>
            <exon e_start="62536" e_stop="62206"/>
            <exon e_start="62136" e_stop="61563"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="0.888" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="64375" e_stop="64051" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64050" i_stop="63177" i_length="874"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63176" e_stop="62670" e_length="507"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.979">
            <gDNA_intron_boundary i_start="62669" i_stop="62537" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62536" e_stop="62206" e_length="331"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="62205" i_stop="62137" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62136" e_stop="61563" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64375" stop="64051"/>
              <exon start="63176" stop="62670"/>
              <exon start="62536" stop="62206"/>
              <exon start="62136" stop="61601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64262" stop="64051"/>
              <exon start="63176" stop="62672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64251" stop="64051"/>
              <exon start="63176" stop="62792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64248" stop="64051"/>
              <exon start="63176" stop="62772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64248" stop="64051"/>
              <exon start="63176" stop="62803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64233" stop="64051"/>
              <exon start="63176" stop="62907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64225" stop="64051"/>
              <exon start="63176" stop="62670"/>
              <exon start="62536" stop="62470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64189" stop="64051"/>
              <exon start="63176" stop="62670"/>
              <exon start="62536" stop="62492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64187" stop="64051"/>
              <exon start="63176" stop="62670"/>
              <exon start="62536" stop="62470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64107" stop="64051"/>
              <exon start="63176" stop="62670"/>
              <exon start="62536" stop="62478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64090" stop="64051"/>
              <exon start="63176" stop="62670"/>
              <exon start="62536" stop="62222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63117" stop="62694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63071" stop="62864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63062" stop="62670"/>
              <exon start="62536" stop="62458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63015" stop="62670"/>
              <exon start="62536" stop="62206"/>
              <exon start="62136" stop="61954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62976" stop="62670"/>
              <exon start="62536" stop="62436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62909" stop="62670"/>
              <exon start="62536" stop="62206"/>
              <exon start="62136" stop="61872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62786" stop="62670"/>
              <exon start="62536" stop="62206"/>
              <exon start="62136" stop="62024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62727" stop="62670"/>
              <exon start="62536" stop="62206"/>
              <exon start="62136" stop="61601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62507" stop="62206"/>
              <exon start="62136" stop="61627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423600" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62485" stop="62206"/>
              <exon start="62136" stop="61692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585450" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62315" stop="62206"/>
              <exon start="62136" stop="61687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596940" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62225" stop="62206"/>
              <exon start="62136" stop="61670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62225" stop="62206"/>
              <exon start="62136" stop="61670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62225" stop="62206"/>
              <exon start="62136" stop="61670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62224" stop="62206"/>
              <exon start="62136" stop="61601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61827" stop="61563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAACTAGGCATAGCTATGTACGTTTAGGGAAGAGAGAGAAAAAAAATGAAAAATCAGAAATGCGTACAATTATAAAAGCACCTAATTCCAATGGTGAAATATCACACTAAGCTTTATTGAGAAAAAAAAATGGAGGAATTGGAGAAGAAGAATATTACTAGTATGAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAG : GTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAA : GTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAATCCCATTTGATGATCCAACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAAACAGTGACCAAACAAG : GTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCAGATATGAGCCTTAAGAAAATCACAAATGTACATAAAAATGTTTTTATAATACTCCAGGACGAGTCATTATCATTCTTTGTGCTATTATGATAAACATGTTATGAAGAAT</gDNA_template>
            <first_frame> Q  T  R  H  S  Y  V  R  L  G  K  R  E  K  K  N  E  K  S  E  M  R  T  I  I  K  A  P  N  S  N  G  E  I  S  H  *  A  L  L  R  K  K  N  G  G  I  G  E  E  E  Y  Y  *  Y  E  G  R  R  S  R  R  R  N  *  *  *  F  C  T  C  L  S  L  F  C  F  *  K  L  S  F  S  P  C  F  *  *  L  F  V  D  F  S  I  Q  R  W  R  I  S  P  F  S  H  R  S  S   : G  E  S  F  G  T  *  G  Q  S  C  W  P  L  L  F  S  *  L  V  F  T  M  Y  E  V  Y  K  P  V  S  Q  C  V  S  A  A  *  G  M  Q  Q  Y  Q  S  R  F  R  N  R  L  C  F  V  *  *  R  L  K  C  L  Q  Y  L  *  V  I  N  A  L  A  C  N  S  F  L  *  F  G  N  K  E  S  P  Y  P  K  V  *  C  R  R  Y  P  L  F  D  S  S  T  T  *  R  *  Q  I  R  H  C  S  Y  *  R  R  S  *  T  R  V  S  I  W  S  P  S  F  S  V  Y  Q  R  K  V  G  R  V  T  K  E  G  E  G  E  T  *  Q  P  D  I  E  Q  F  A  N  T  R  C  Q  R  C  S  F  G  A  S  *  S  *  T   : S  V  C  C  F  F  K  G  E  N  S  W  T  L  L  L  S  S  M  V  Q  S  C  E  K  I  Y  S  E  V  N  F  S  L  Q  K  D  *  A  A  A  R  G  K  G  *  *  G  F  R  D  S  V  R  I  K  *  P  *  P  S  *  F  H  N  V  F  *  D  H  A  L  A  S  N  P  I  *  *  S  N  N  Q  S  S  S  *  V  F  *  Y  P  R  D  S  E  P  S  D  I  G  P  *  W  *  N  S  D  Q  T  R :   *  E  P  H  Q  L  I  Q  R  E  R  L  P  I  H  K  D  *  N  R  Y  I  R  E  A  N  G  *  N  S  K  R  P  S  *  D  R  E  P  F  G  P  S  T  R  A  H  F  S  T  R  G  P  W  G  W  S  F  Y  L  L  *  L  *  *  T  G  L  W  M  G  L  P  M  P  *  V  W  L  *  G  T  S  Q  V  C  E  A  R  A  P  R  P  R  K  L  I  Y  W  A  D  L  R  F  L  H  V  I  C  R  D  K  *  V  K  G  Y  H  D  V  *  L  G  I  N  H  V  L  M  T  C  Y  C  E  F  L  M  G  L  C  L  W  N  S  Q  L  V  V  V  G  L  R  S  H  Q  I  *  A  L  R  K  S  Q  M  Y  I  K  M  F  L  *  Y  S  R  T  S  H  Y  H  S  L  C  Y  Y  D  K  H  V  M  K  N </first_frame>
            <second_frame>  K  L  G  I  A  M  Y  V  *  G  R  E  R  K  K  M  K  N  Q  K  C  V  Q  L  *  K  H  L  I  P  M  V  K  Y  H  T  K  L  Y  *  E  K  K  M  E  E  L  E  K  K  N  I  T  S  M  K  E  E  E  A  E  E  E  I  D  N  S  F  V  P  V  Y  H  S  F  A  S  K  S  Y  H  S  H  L  V  S  D  D  Y  L  S  I  L  A  S  K  D  G  E  F  L  L  S  P  T  G  A  Q  :  V  K  V  S  E  L  E  G  K  V  V  G  L  Y  F  S  A  N  W  Y  S  P  C  T  K  F  T  N  L  L  V  N  V  Y  Q  Q  L  K  E  C  S  N  I  N  L  G  F  E  I  V  F  V  S  S  D  E  D  L  N  A  F  N  T  Y  R  S  S  M  P  W  L  A  I  P  F  S  D  L  E  T  R  R  A  L  T  Q  K  F  D  V  E  G  I  P  C  L  I  V  L  L  P  N  D  D  K  L  D  T  A  V  I  K  D  G  V  E  L  V  Y  R  Y  G  V  Q  A  F  P  F  T  K  E  R  L  D  E  L  R  K  K  E  K  E  K  R  D  N  Q  T  L  S  S  L  L  T  H  D  A  R  D  V  L  S  G  H  P  S  P  K  Q  :  V  S  V  A  S  L  K  G  K  T  V  G  L  Y  F  S  A  Q  W  C  N  P  A  K  K  F  T  P  R  L  I  S  V  Y  K  K  I  K  Q  Q  L  E  G  K  D  D  E  D  F  E  I  V  F  V  S  S  D  H  N  Q  V  D  F  T  T  Y  F  E  T  M  P  W  L  A  I  P  F  D  D  P  T  I  K  A  L  A  K  Y  F  D  I  R  G  I  P  S  L  V  I  L  G  P  D  G  K  T  V  T  K  Q   : G  R  S  L  I  N  L  Y  K  E  N  A  Y  P  F  T  K  T  R  I  D  I  L  E  K  Q  M  D  E  I  A  K  G  L  P  K  T  E  N  H  S  G  H  R  H  E  L  T  L  V  P  E  G  H  G  G  G  A  F  I  C  C  D  C  D  E  Q  G  Y  G  W  A  Y  Q  C  L  E  C  G  Y  E  V  H  P  K  C  V  K  P  V  R  H  D  P  E  N  *  Y  I  G  L  I  L  G  S  Y  M  L  Y  V  E  I  N  R  *  K  D  T  M  M  Y  N  W  V  *  I  M  S  *  *  H  V  I  V  N  F  *  W  A  F  V  Y  G  I  H  N  L  *  L  L  V  *  E  V  I  R  Y  E  P  *  E  N  H  K  C  T  *  K  C  F  Y  N  T  P  G  R  V  I  I  I  L  C  A  I  M  I  N  M  L  *  R   </second_frame>
            <third_frame>   N  *  A  *  L  C  T  F  R  E  E  R  E  K  K  *  K  I  R  N  A  Y  N  Y  K  S  T  *  F  Q  W  *  N  I  T  L  S  F  I  E  K  K  K  W  R  N  W  R  R  R  I  L  L  V  *  R  K  K  K  Q  K  K  K  L  I  I  V  L  Y  L  F  I  T  L  L  L  L  K  V  I  I  L  T  L  F  L  M  I  I  C  R  F  *  H  P  K  M  A  N  F  S  F  L  P  P  E  L  R :   *  K  F  R  N  L  R  A  K  L  L  A  F  T  F  Q  L  T  G  I  H  H  V  R  S  L  Q  T  C  *  S  M  C  I  S  S  L  R  N  A  A  I  S  I  S  V  S  K  S  S  L  F  R  L  M  K  T  *  M  P  S  I  L  I  G  H  Q  C  L  G  L  Q  F  L  S  L  I  W  K  Q  G  E  P  L  P  K  S  L  M  S  K  V  S  L  V  *  *  F  Y  Y  L  T  M  T  N  *  T  L  Q  L  L  K  T  E  L  N  S  C  I  D  M  E  S  K  L  F  R  L  P  K  K  G  W  T  S  Y  E  R  R  R  R  R  N  V  T  T  R  H  *  A  V  C  *  H  T  M  P  E  M  F  F  R  G  I  L  V  L  N  K :   C  L  L  L  L  *  R  G  K  Q  L  D  F  T  S  Q  L  N  G  A  I  L  R  K  N  L  L  R  G  *  F  Q  S  T  K  R  L  S  S  S  *  R  E  R  M  M  R  I  S  R  *  C  S  Y  Q  V  T  I  T  K  L  I  S  Q  R  I  L  R  P  C  P  G  *  Q  S  H  L  M  I  Q  Q  S  K  L  *  L  S  I  L  I  S  E  G  F  R  A  *  *  Y  W  A  L  M  V  K  Q  *  P  N  K  :  V  G  A  S  S  T  Y  T  K  R  T  L  T  H  S  Q  R  L  E  *  I  Y  *  R  S  K  W  M  K  *  Q  K  A  F  L  R  Q  R  T  I  R  A  I  D  T  S  S  L  *  Y  Q  R  A  M  G  V  E  L  L  S  V  V  I  V  M  N  R  A  M  D  G  L  T  N  A  L  S  V  A  M  R  Y  I  P  S  V  *  S  P  C  A  T  T  Q  K  T  N  I  L  G  *  S  *  V  L  T  C  Y  M  *  R  *  I  G  K  R  I  P  *  C  I  I  G  Y  K  S  C  L  N  D  M  L  L  *  I  F  N  G  P  L  F  M  E  F  T  T  C  S  C  W  F  E  K  S  S  D  M  S  L  K  K  I  T  N  V  H  K  N  V  F  I  I  L  Q  D  E  S  L  S  F  F  V  L  L  *  *  T  C  Y  E  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64254" stop="64051"/>
                    <exon start="63176" stop="62670"/>
                    <exon start="62536" stop="62206"/>
                    <exon start="62136" stop="61847"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1329</number_coding_nucleotides>
                  <number_encoded_amino_acids>443</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKKMEELEKKNITSMKEEEAEEEIDNSFVPVYHSFASKSYHSHLVSDDYLSILASKDGEFLLSPTGAQVKVSELEGKVVGLYFSANWYSPCTKFTNLLVNVYQQLKECSNINLGFEIVFVSSDEDLNAFNTYRSSMPWLAIPFSDLETRRALTQKFDVEGIPCLIVLLPNDDKLDTAVIKDGVELVYRYGVQAFPFTKERLDELRKKEKEKRDNQTLSSLLTHDARDVLSGHPSPKQVSVASLKGKTVGLYFSAQWCNPAKKFTPRLISVYKKIKQQLEGKDDEDFEIVFVSSDHNQVDFTTYFETMPWLAIPFDDPTIKALAKYFDIRGIPSLVILGPDGKTVTKQGRSLINLYKENAYPFTKTRIDILEKQMDEIAKGLPKTENHSGHRHELTLVPEGHGGGAFICCDCDEQGYGWAYQCLECGYEVHPKCVKPVRHDPEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="74026" PGL_stop="74708"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74026" e_stop="74708"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="74026" e_stop="74708" e_length="683"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74026" stop="74708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74027" stop="74536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74053" stop="74662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430127" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAAGAAATCGAAATTCTAGGAACTGTACTTGATTCAAAATTAAGCTATTTCTCATAACAACATCCACCACCCCAGATTCAGAATTAAACGAAGAAAAAAAAAATTCAACACCAATCATATCAAACTACTCCTATAATCTATCGAACATTAATAAAAATAAAGTTTGAAATAATTGTAATTAGGAATATCTTCAACATGGGTTACTTTCAGGTGGATTGAAGAACTCCGGCTCCAGTTTAGTTCTACAAACTGGACAAATCGGATTTTTTGAAAGCCAAGTATCAGCACATTCAAGGTGAAATCCATGGTTACAACCCGGAACAACTCGAGCAATTTGCTCATTCTCAATTTCATCCAAACACACCGCACAATCGTTACCCATTAACAATTCATTCCCTGTAATTTTCGGTAGTTTGTCCAATTGAGCAGCAGAAAGACCCAATTCCTGATTCGTTTTCTGACTATGGTAATTTTCAGCGCCGGGGCCGGCAGATTGGTAAGCAGCGGCGTACCAGAGTAAACAGATGTAGACTAAGAAAACAGCGCTCATTCCAACACAGGGAAGAAACAGAGCGAGAAAAACAGAGACAAGCATTGTTTAATTTTGAAAAATGACCAAAAATAAATTTATGTTTCACGGCGGGTGGCGGAGGTGGTGGCGCCGGAGAAGAAGAGAAAG</gDNA_template>
            <first_frame> E  K  R  N  R  N  S  R  N  C  T  *  F  K  I  K  L  F  L  I  T  T  S  T  T  P  D  S  E  L  N  E  E  K  K  N  S  T  P  I  I  S  N  Y  S  Y  N  L  S  N  I  N  K  N  K  V  *  N  N  C  N  *  E  Y  L  Q  H  G  L  L  S  G  G  L  K  N  S  G  S  S  L  V  L  Q  T  G  Q  I  G  F  F  E  S  Q  V  S  A  H  S  R  *  N  P  W  L  Q  P  G  T  T  R  A  I  C  S  F  S  I  S  S  K  H  T  A  Q  S  L  P  I  N  N  S  F  P  V  I  F  G  S  L  S  N  *  A  A  E  R  P  N  S  *  F  V  F  *  L  W  *  F  S  A  P  G  P  A  D  W  *  A  A  A  Y  Q  S  K  Q  M  *  T  K  K  T  A  L  I  P  T  Q  G  R  N  R  A  R  K  T  E  T  S  I  V  *  F  *  K  M  T  K  N  K  F  M  F  H  G  G  W  R  R  W  W  R  R  R  R  R  E   </first_frame>
            <second_frame>  K  K  E  I  E  I  L  G  T  V  L  D  S  K  L  S  Y  F  S  *  Q  H  P  P  P  Q  I  Q  N  *  T  K  K  K  K  I  Q  H  Q  S  Y  Q  T  T  P  I  I  Y  R  T  L  I  K  I  K  F  E  I  I  V  I  R  N  I  F  N  M  G  Y  F  Q  V  D  *  R  T  P  A  P  V  *  F  Y  K  L  D  K  S  D  F  L  K  A  K  Y  Q  H  I  Q  G  E  I  H  G  Y  N  P  E  Q  L  E  Q  F  A  H  S  Q  F  H  P  N  T  P  H  N  R  Y  P  L  T  I  H  S  L  *  F  S  V  V  C  P  I  E  Q  Q  K  D  P  I  P  D  S  F  S  D  Y  G  N  F  Q  R  R  G  R  Q  I  G  K  Q  R  R  T  R  V  N  R  C  R  L  R  K  Q  R  S  F  Q  H  R  E  E  T  E  R  E  K  Q  R  Q  A  L  F  N  F  E  K  *  P  K  I  N  L  C  F  T  A  G  G  G  G  G  G  A  G  E  E  E  K  </second_frame>
            <third_frame>   K  K  K  S  K  F  *  E  L  Y  L  I  Q  N  *  A  I  S  H  N  N  I  H  H  P  R  F  R  I  K  R  R  K  K  K  F  N  T  N  H  I  K  L  L  L  *  S  I  E  H  *  *  K  *  S  L  K  *  L  *  L  G  I  S  S  T  W  V  T  F  R  W  I  E  E  L  R  L  Q  F  S  S  T  N  W  T  N  R  I  F  *  K  P  S  I  S  T  F  K  V  K  S  M  V  T  T  R  N  N  S  S  N  L  L  I  L  N  F  I  Q  T  H  R  T  I  V  T  H  *  Q  F  I  P  C  N  F  R  *  F  V  Q  L  S  S  R  K  T  Q  F  L  I  R  F  L  T  M  V  I  F  S  A  G  A  G  R  L  V  S  S  G  V  P  E  *  T  D  V  D  *  E  N  S  A  H  S  N  T  G  K  K  Q  S  E  K  N  R  D  K  H  C  L  I  L  K  N  D  Q  K  *  I  Y  V  S  R  R  V  A  E  V  V  A  P  E  K  K  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74432" stop="74644"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSVVCPIEQQKDPIPDSFSDYGNFQRRGRQIGKQRRTRVNRCRLRKQRSFQHREETEREKQRQALFNFEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="74748" PGL_stop="74044"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74748" e_stop="74044"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="74748" e_stop="74044" e_length="705"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74748" stop="74044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74735" stop="74058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74735" stop="74058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74735" stop="74176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74729" stop="74058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74728" stop="74155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74716" stop="74193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573581" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTGCAGCATGGTGTGCCAATTACTCAATTTTTTAATTCTTTCTCTTCTTCTCCGGCGCCACCACCTCCGCCACCCGCCGTGAAACATAAATTTATTTTTGGTCATTTTTCAAAATTAAACAATGCTTGTCTCTGTTTTTCTCGCTCTGTTTCTTCCCTGTGTTGGAATGAGCGCTGTTTTCTTAGTCTACATCTGTTTACTCTGGTACGCCGCTGCTTACCAATCTGCCGGCCCCGGCGCTGAAAATTACCATAGTCAGAAAACGAATCAGGAATTGGGTCTTTCTGCTGCTCAATTGGACAAACTACCGAAAATTACAGGGAATGAATTGTTAATGGGTAACGATTGTGCGGTGTGTTTGGATGAAATTGAGAATGAGCAAATTGCTCGAGTTGTTCCGGGTTGTAACCATGGATTTCACCTTGAATGTGCTGATACTTGGCTTTCAAAAAATCCGATTTGTCCAGTTTGTAGAACTAAACTGGAGCCGGAGTTCTTCAATCCACCTGAAAGTAACCCATGTTGAAGATATTCCTAATTACAATTATTTCAAACTTTATTTTTATTAATGTTCGATAGATTATAGGAGTAGTTTGATATGATTGGTGTTGAATTTTTTTTTTCTTCGTTTAATTCTGAATCTGGGGTGGTGGATGTTGTTATGAGAAATAGCTTAATTTTGAATCAAGTACAGTTCCTAGA</gDNA_template>
            <first_frame> P  L  Q  H  G  V  P  I  T  Q  F  F  N  S  F  S  S  S  P  A  P  P  P  P  P  P  A  V  K  H  K  F  I  F  G  H  F  S  K  L  N  N  A  C  L  C  F  S  R  S  V  S  S  L  C  W  N  E  R  C  F  L  S  L  H  L  F  T  L  V  R  R  C  L  P  I  C  R  P  R  R  *  K  L  P  *  S  E  N  E  S  G  I  G  S  F  C  C  S  I  G  Q  T  T  E  N  Y  R  E  *  I  V  N  G  *  R  L  C  G  V  F  G  *  N  *  E  *  A  N  C  S  S  C  S  G  L  *  P  W  I  S  P  *  M  C  *  Y  L  A  F  K  K  S  D  L  S  S  L  *  N  *  T  G  A  G  V  L  Q  S  T  *  K  *  P  M  L  K  I  F  L  I  T  I  I  S  N  F  I  F  I  N  V  R  *  I  I  G  V  V  *  Y  D  W  C  *  I  F  F  F  F  V  *  F  *  I  W  G  G  G  C  C  Y  E  K  *  L  N  F  E  S  S  T  V  P  R </first_frame>
            <second_frame>  L  C  S  M  V  C  Q  L  L  N  F  L  I  L  S  L  L  L  R  R  H  H  L  R  H  P  P  *  N  I  N  L  F  L  V  I  F  Q  N  *  T  M  L  V  S  V  F  L  A  L  F  L  P  C  V  G  M  S  A  V  F  L  V  Y  I  C  L  L  W  Y  A  A  A  Y  Q  S  A  G  P  G  A  E  N  Y  H  S  Q  K  T  N  Q  E  L  G  L  S  A  A  Q  L  D  K  L  P  K  I  T  G  N  E  L  L  M  G  N  D  C  A  V  C  L  D  E  I  E  N  E  Q  I  A  R  V  V  P  G  C  N  H  G  F  H  L  E  C  A  D  T  W  L  S  K  N  P  I  C  P  V  C  R  T  K  L  E  P  E  F  F  N  P  P  E  S  N  P  C  *  R  Y  S  *  L  Q  L  F  Q  T  L  F  L  L  M  F  D  R  L  *  E  *  F  D  M  I  G  V  E  F  F  F  S  S  F  N  S  E  S  G  V  V  D  V  V  M  R  N  S  L  I  L  N  Q  V  Q  F  L   </second_frame>
            <third_frame>   S  A  A  W  C  A  N  Y  S  I  F  *  F  F  L  F  F  S  G  A  T  T  S  A  T  R  R  E  T  *  I  Y  F  W  S  F  F  K  I  K  Q  C  L  S  L  F  F  S  L  C  F  F  P  V  L  E  *  A  L  F  S  *  S  T  S  V  Y  S  G  T  P  L  L  T  N  L  P  A  P  A  L  K  I  T  I  V  R  K  R  I  R  N  W  V  F  L  L  L  N  W  T  N  Y  R  K  L  Q  G  M  N  C  *  W  V  T  I  V  R  C  V  W  M  K  L  R  M  S  K  L  L  E  L  F  R  V  V  T  M  D  F  T  L  N  V  L  I  L  G  F  Q  K  I  R  F  V  Q  F  V  E  L  N  W  S  R  S  S  S  I  H  L  K  V  T  H  V  E  D  I  P  N  Y  N  Y  F  K  L  Y  F  Y  *  C  S  I  D  Y  R  S  S  L  I  *  L  V  L  N  F  F  F  L  R  L  I  L  N  L  G  W  W  M  L  L  *  E  I  A  *  F  *  I  K  Y  S  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74627" stop="74220"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMLVSVFLALFLPCVGMSAVFLVYICLLWYAAAYQSAGPGAENYHSQKTNQELGLSAAQLDKLPKITGNELLMGNDCAVCLDEIENEQIARVVPGCNHGFHLECADTWLSKNPICPVCRTKLEPEFFNPPESNPC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 425 chains have been computed
$ 
$ memory statistics:
$ 927728 bytes spliced alignments in total
$ 380 spliced alignments have been stored
$ 2441 bytes was the average size of a spliced alignment
$ 37096 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1854 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 451 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:25:53
-->
