<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:54:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6668" ref_strand="+" ref_description="SGN-M6668 C2_At1g20410 [cosii_markers]">
      <seq>attcattttagttcaaagtagtgccgccagtcgcctaatttacctgatggcgggtgaagttgcggcggcggaggttatcggcgtcaagcacttgagttcggctgaagctgcggcggaggaggagaagctacgtcttctccgcgaagccgtccatgcgctgccagtgagcgccgtcaaagatttatggtccattggggcatgtgttcgatgcattttccgactatttggacttcatgaactcatgtgttcacatccttcactctcaatatcaaagtggtgtgatattttagaagatgtgatgagaaacaaagatggagaatttaatgagcaatcacatcaagaacgatcaagggagacaaacttttgcaaaatatgcttaggcattttgcaatttctctattatgatgatactggaactttattaaaaaagtatagtgccgatgactttgctgtagtaatttctgaacttgtaaagcaacaatatcaacaaattgatagtttttctcttgaagtctcattgccttcggttgtaacagaaaatgatcaagcagtttggttgtatatgaagaataagtaccgccatgaactttggttccaagagaaggctgaatgtcaattcatttctacaaaagacatcttcaaactattagtgataaatccattacaaagattgttgggtgtaaaatctactcaaagttcttttcgcgttcgcttaacatactcacattctgatgcattaacaagagatgacgttcaggaagggaatggaggaaataagaggaggaaaacagacaaaacaggtttcactggtgacctcaagacaactggggaatctgttactcctcatgttgagtcttttgatagtaatattgttgatggagatggactgactaaagtttgtcccaaggaggcccaagatctcagttgtaataacttaatggctaagttagataaggtcggtaagccttgttctctggccattcattgctgcagaagctctacatacattggagggagatatcttaagtattcgagaaatgtgagccagacacgctgggttattgatgatgaacgaatgggagaagcatccgttgaggaaataataggtggggccatccttcctatcttccagggtgacaattataagtttcatgctgccggtagggaggacattgatgttcggatgctcggtacaggccgtccttttcttgtagagatacaaaatgcacgccaagtcccttctgaagcactcataaaagaaatagagaagaaaattaatagtctagaaagtcaatacgtccgggttaaaaatcttagagctgtaggcagtcaagggtgggacctcatgcgtgaaggagaggcagagaagcagaagcagtacgctgcattggtgtggatttctcgtcctgtcagtgatgaagatttgcaaactatatcatcactaaaggaattgaaagttgctcaaaaaacgcctataagggttcttcatcgccgaagtccattggagagagagaaaattatacattggatgcaagtggagagggtatctggaagctcacaatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="21360" stop="14383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21060" g_stop="20865" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20864" i_stop="19460" i_length="1405">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19459" g_stop="19101" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="555" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19100" i_stop="18880" i_length="221">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18879" g_stop="18759" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="676" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18758" i_stop="18498" i_length="261">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18497" g_stop="18383" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="791" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18382" i_stop="17734" i_length="649">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.167" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17733" g_stop="17570" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="955" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17569" i_stop="17458" i_length="112">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17457" g_stop="17386" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1027" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17385" i_stop="16493" i_length="893">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.432" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16492" g_stop="16424" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1028" r_stop="1096" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16423" i_stop="16336" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16335" g_stop="16255" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1097" r_stop="1177" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="16254" i_stop="16176" i_length="79">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16175" g_stop="16056" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1178" r_stop="1297" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="16055" i_stop="15944" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15943" g_stop="15869" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1298" r_stop="1372" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15868" i_stop="15755" i_length="114">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15754" g_stop="15674" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1373" r_stop="1453" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="15673" i_stop="14878" i_length="796">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="14877" g_stop="14804" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1454" r_stop="1527" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="14803" i_stop="14722" i_length="82">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="14721" g_stop="14683" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1528" r_stop="1566" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-M6668" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21060" e_stop="20865"/>
          <exon e_start="19459" e_stop="19101"/>
          <exon e_start="18879" e_stop="18759"/>
          <exon e_start="18497" e_stop="18383"/>
          <exon e_start="17733" e_stop="17570"/>
          <exon e_start="17457" e_stop="17386"/>
          <exon e_start="16492" e_stop="16424"/>
          <exon e_start="16335" e_stop="16255"/>
          <exon e_start="16175" e_stop="16056"/>
          <exon e_start="15943" e_stop="15869"/>
          <exon e_start="15754" e_stop="15674"/>
          <exon e_start="14877" e_stop="14804"/>
          <exon e_start="14721" e_stop="14683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTTAGTTCAAAGTAGTGCCGCCAGTCGCCTAATTTACCTGATGGCGGGTGAAGTTGCGGCGGCGGAGGTTATCGGCGTCAAGCACTTGAGTTCGGCTGAAGCTGCGGCGGAGGAGGAGAAGCTACGTCTTCTCCGCGAAGCCGTCCATGCGCTGCCAGTGAGCGCCGTCAAAGATTTATGGTCCATTGGGGTGCGTTTGTTTTTTATTGATATTTTATAAAGCGATTAATTTTGTTTCTTAGAAAAGAGTTGAACTTTCTATGTTTTTGAGTTAGATTTCGTTATAAATTTAACTTGGTAGTTTTGTTTTTGAATGTTTAGTTTAATTCTGTGAAATAAAAACTTCAAATTTCTTGTAGTATCACATAGATATTCCTTTATTAGTACATTAGTGTATTCATTGAAACTATGGATTGTTTGGAGAAGAGAAAGAAAATGTCATGAAAGTGTTAGCTTTAGAGTTAATTCGAGCTAGAGTTCGTTCTACAAGCTTCTTCGAGATGTAATTAGATCATATACGATAGAAAGCTGAATCACTAGTAAAGAAATTGGGATGCAAAGTTTCTTAGTGAATCTTCATTTTCGTAGAGTAGGTTGGGTATGAAATGTACTGAGGTTCTAGAGTTCAAGTATCAGTTGATCATGTTATATGACATAGCAACTTTCAGCTTCAAGTCACAAAAAAAGAGCTATTTGAGTAAGTACATCATTTAAATTGGGAGATAAGGAGCTCTTACTACTGATTCCCTCTTTGTTATAGCAGGAGGATTTAAGCATGTCTTTTGATACTGTTACCATTATAAAAAAAAAGCATACGTCTTTTGATAAATTCCACATAAGCCCTCTCCTTTTATTTATTCACGGGATATCTTAGCTTCAAGGTGGGTTGACATAGTTGAACATTGCACTTTCTGGAAATGATGAGAGGAGCATTGAATTCTATACTTTCACATATATGATCATAAAAAGCTTTTGAGGACTACTTCTATAATCTATTTTACCTCCTGCTCCCCTCATCCACTGCAATCCACCCTGCCGCCAACGCATGCACTAACCTTTTGCATACCAGGGTGCATTCAGGTGCATGGGTCTTGGAAGGTGCTGCTTGTGGTTGGTAGAGAGGTTTGCAAGAACATTACGGGTGTAAAACTAAGTGATTGAATTTATTGATTTGTTTGCAAAATGACTAAAATGACTGAATTTTATGAACATTAATGTATTGGTGGACCAAAACTATATCTTCGCGTTAGTAAGAGTATTTTGTAAAAGTAGGTTTCTGGTGAATTAAGTCCATTTTTTGTAATTTCAAAGCCATGTCAAATGGCTTGTTGCACTATGCGATACTTGAGGAACTTTCTTCCTCTAAGGAAAGAAGTGAATAATTGGTAAAGGTAATCTGATTATTGACTATGCGATACTTGAGGAACTTTCTTCCTCTAAGGAAAGAAGTGAATAATTGGTGAAGGTAATCTGATTATTGACTATGGTCGGTCATCCATCTGTAATTAATTTGTCCAGTCAATGAGTAGAAGACATTTTCTATTAATTCTTAATCTAGCAACTCAAAGAACTTTTTTTTTTTAATTTTATTTTAGGCATGTGTTCGATGCATTTTCCGACTATTTGGACTTCATGAACTCATGTGTTCACATCCTTCACTCTCAATATCAAAGTGGTGTGATATTTTAGAAGATGTGATGAGAAACAAAGATGGAGAATTTAATGAGCAATCACATCAAGAACGATCAAGGGAGACAAACTTTTGCAAAATATGCTTAGGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAACTTGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTGCCTTCGGTTGTAACAGAAAATGATCAAGCAGTTTGGTAAGATTTTAGAGTCTGATGAATTTCTTTATCAATTTCATTCACGTTGGATAGGAGGGTCAGATGCCCCTCCAAAATACTTATGCTAATTTTCTTTCTTCGATCTGAAACTTATACTTAGATTTTGTTGTTTTCCACCATTAACTTCCATATATATATATATATATATATGTATGTATGCCTTTCTTATTTGAATACCTTCCAATATATTTTGTTTTCAGGTTGTATATGAAGAATAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTTGGTAATGAAATCTTCTTTTCTGATCTCTTTTGCACCTCTTCTGTAATATCAATGTTTGACACTATGGGATTAGAATTATGTTGGTAATAATTGTTATTTTTCATTTGGTGTGAATATATATGATATATGATACCTTCAAATTGAGAAAGTCAATTGGGGGCAAACGTTCTAACTGAAATGCGTTCTGCTGATTGGTCAATATATAAACCTGTAAAATAAAGGATGTAAATGTATATATATTATGGGTTATTCACGTTTGCAGGGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAACAAGAGATGACGTTCAGGAAGGGAATGGAGGAAATAAGAGGAGGAAAACAGGCATGCTATCTTGTCAAAATGCTTTTTTCCCATTTGAGATTTTAAGTTTCTAGTGCTTGGTACCTTACCTGCTGTTTCTCATTACTGTGTCTCAACCCTTGAGACACTATCGGTGGTGATAGTTGTCTTGTGGGCAGGTAGGCATAGATAAGCATGCATTTTTCATTTTTCTCTTGTTTTGAACAATATTTAGTTTAATCATATGCCAGGATGATGTAAACAGATGATATTTCTGATGTTTTGACTGTTTACTCTATTAAGCTTACTTCAAAAAGTCTTCTGCTTTAGGTTTTTCCAGTTCTTTCCCTTGCCTATATTTAGTACCTCCAGCATATTCATCCTTTTATACTCATATTTTTCCTTCATATGCTGTCTCGAGAAAACTCTAGTATCAGTGTTCAAAGGAAGTAATTTGAAAACAAAAGGAAAATAGAAATCCATGAATTGCGACTTCTATGCTCCTGCATTTGAATATTGGATCTAATTGCTAAAGTGAAACAAGTATCCTCTCAGTACTCTTCATTTTATGATTGCCTGTGCTAACAAAGTTCCATTCTGTGCTCCATAATATCTGCTGGATCAAATGTTACTGGTTGTCATCCCATAGTTTATTTGGGTGCAATAGAAAGTATTGACTGATCGTTGTCAGACAAAGCAGGTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAGGTATTGAGGACTTCTAATTATTTTTCATATGATGGAACTCCAACTATTCACTCTATTTGAAGTTTATTCAATGTATATATTTTTCAATCATATATAGTGAATTTTTTTTCAGGTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAGGTATAGCAAATTCAACCTGAAAAGCTTTGTTGTAAATATACTTCTCTGCTAAACCCATGAATAAGCACCACTGGCTGTTTGTCATCATTGAATTCTGACTTTCTGAGCTCTGCATACGATTTAGTTTTTTGACTCGAAAACATTATCGCCAGTGTTTATGCTGCTTTCTGTACTTCAAAGAGGTGTAACAAGACTAGAAGGAGAAGGATGCAAAATGTTGTGGAGAAGTTAAATCATCCTATGTGAAGGACTTTCATAGAATGTATGTAGATTGGAGATTGTTGCTTGAGAAAATCTTAATTGCCAGTGAAATGCACTGTCATTTGACTATTAACTACAATTTGACATTGTTGTAGGCTAAACATTGTAAACCAATAGCTTGCACATGTACCCGACACCTTAAGGCACTGAGTGGAGTAACTCACGACTTTTAGAAACCCCTGCTAATCGGGTGATTATGATAATATGTAAAAGAATGTAATCATCCAACCCAAAACCTAGGATAAGTTTAGTGATTAGGAACATTTATTATCCCTTTGAATACCAATATATATCTGATGTAGGACATTATACATCTCTTAACAATTTTGAAATGGTGGAAGGTGGCTTATTCTTCAAATATAACTTATTAAATTACCATTAGATATGTAGGTTATAATTATTCAGCTAAGCTCAATCTTGGTCTCCCCACTGTTATTGGACATGTGTAGCAAGCAAGCCCATGTACTAATCTCATGTCTGTTTCTGAGAAGGGTTATATCTATATTTGTGAATTCTGCTTCTTGCTCATTATCACAAACTTTATGTTTGATCAACCCTTCTTAGTTCCATAGTCCATTTAAAAAGTTGCTCTGATGGAGTATTAACCACCTGAGAATGTGCCTTTACTGCAGTATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAGGTATTTCCCTATTCTTTATTGTAGTAATTTCTGTTGTTGGTAGTTACTGGGATTATAATTGTTAACTCTTCTTTGAATGTTCTCTTAGGAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGATGTAAGAAAGATCTGGTTTCTGACAGACCATAATTATTGGATGATTATTGATCCTCTAGTCTCAACACTACCTTTCTCAGGTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATACGTGAGTTGGTTAATACTTCTAAGCTGTCTTTGATAACTTAAATGAGTGGAGCACACTGCACCACATCATTTTCCCAATATATATGCAACAGTCTTTACATATTTTGCATCAGGTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAGGTAAACCTCTGGCTATTTGAGCTAGTACTAGCTTATTTACCAGCCGATCTCTGCTTAAAAACATATTTATTTCCACCTATCTTTTCATAAGAAATTTCTTTCCATCCAATACAGAAGCAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATATCATCACTAAAGGAATTGGTGAGTAATTCTCTATTTGGATTTACTGAAAAGAGTTTGAAGAATCCCTAATCGTTTGTGAAATTTTGCGATAAACCTATCACATATACATTCTTACATATATTAAGAGTGTGTTCGGTAGGATGGAAAATGTTTTAACTGGAAAATATTTTTCTAGGAAACTAAATGGGTTTCTTACTTATTTTCTTCGGTTTGGTACGTAAGCAAAAAATATCATCCTAAAAGCATTTGTATGTAATCAATGTGGAAGGGGGCTATGAGGGTGGGATGAAGATGAGATGTGTGGGAGGGTGGGTAGGCCACAATCAATGAGGAATGCTACTTGTGGAGCTTGTTTTCCTTACTTTCATTAGGGAGCTCATCTTCCTCATTTTTAAGGAGCTTATTTTCTAGAGAATGTTTTTCAAAAATTTTGACTAACCTAACATGTGAAAATTAGAAAATATGTTCTGAAAAGTGTTCTCGTCCGTACCGAATACACCCTAAAAGAATATATCAGAAATATATTGAAAAAACAACTAAGACCAAGATTACCTATTCTTTTTGCTTTGAAAAGAGTACATTTTATATTTTCATGGAGCACTAGCTTTTATTAACTGTTGGAGTGCCTGGCATGATTGTTCATATATCATATCCCCTCCTTTCAATTACGAGTGTTGAACTACTACTAAACATGGGAGTAGCATCAAATGTAGTTGTGTGTGATTTGATAATTTGTTAAGGGCTGATCCACTACCATCTTATCTAATAATATGTTTCATTATCTCTCCCCGTTTTTTGTTTCTCTGGGCTTCAGAAAGTTGCTCAAAAAACGCCTATAAGGGTTCTTCATCGCCGAAGTCCATTGGAGAGAGAGAAAATTATACATTGGTATGAACAATTTCTAGCAACAGACTAACAACTATGGGTTTACTTTTATATCAATCGTGACTAGTGTTGTTTCTTGTGACAGGATGCAAGTGGAGAGGGTATCTGGAAGCTCACAATATCT</genome_strand>
        <mrna_strand>ATTCATTTTAGTTCAAAGTAGTGCCGCCAGTCGCCTAATTTACCTGATGGCGGGTGAAGTTGCGGCGGCGGAGGTTATCGGCGTCAAGCACTTGAGTTCGGCTGAAGCTGCGGCGGAGGAGGAGAAGCTACGTCTTCTCCGCGAAGCCGTCCATGCGCTGCCAGTGAGCGCCGTCAAAGATTTATGGTCCATTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGTTCGATGCATTTTCCGACTATTTGGACTTCATGAACTCATGTGTTCACATCCTTCACTCTCAATATCAAAGTGGTGTGATATTTTAGAAGATGTGATGAGAAACAAAGATGGAGAATTTAATGAGCAATCACATCAAGAACGATCAAGGGAGACAAACTTTTGCAAAATATGCTTAGGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAACTTGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTGCCTTCGGTTGTAACAGAAAATGATCAAGCAGTTTG.............................................................................................................................................................................................................................GTTGTATATGAAGAATAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTTG.....................................................................................................................................................................................................................................................................GGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAACAAGAGATGACGTTCAGGAAGGGAATGGAGGAAATAAGAGGAGGAAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAACAGGTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAG................................................................................................................GTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAG........................................................................................GAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGAT...............................................................................GTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATAC................................................................................................................GTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAG..................................................................................................................AAGCAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATATCATCACTAAAGGAATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTGCTCAAAAAACGCCTATAAGGGTTCTTCATCGCCGAAGTCCATTGGAGAGAGAGAAAATTATACATTG..................................................................................GATGCAAGTGGAGAGGGTATCTGGAAGCTCACAATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6668-2" ref_strand="+" ref_description="SGN-M6668-2 C2_At1g20410-2 [cosii_markers]">
      <seq>atttattttagttcaaagtagttccgccagtcgcctaatttaccttatggcgggtgaagttgcggcggcggaggttaccggcgtcaagcacttgagttcggctgaagctgcggcggaggaggagaagctacatcttctacgcgaagccgtccatgcgctgccagtgaacgccgtcaaagatttatggtccattggggcatgtgttcgatgcatttttcgactatttggacttcatgaactcatgtgttcacatccttcactctcaatatcaaagtggtgtgatattttagaagatgtaatgagaaagaaagatggagaatttaatgagcaatcacatcaagaacgatcaagggagacaaacttctgcaaaatttgcttaggcattttgcaatttctctattatgatgatactggaactttattaaaaaagtatagtgccgatgactttgctgtagtaatttctgaacatgtaaagcaacaatatcaacaaattgatagtttttctcttgaagtctcattaccttcggcagtaacagaaaatgatcaagcagtttggttgtatatgaaaaaaaagtaccgccatgaactttggttccaagagaaggctgaatgtcaattcatttctacaaaagacatcttgaaactattagtgataaatccattacaaagattgttngggtgtaaaatctactcaaagttcttttcgcgttcgcttaacatactcacattctgatgcattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="21360" stop="18133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21060" g_stop="20865" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20864" i_stop="19460" i_length="1405">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19459" g_stop="19101" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="555" r_length="359" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19100" i_stop="18880" i_length="221">
            <donor d_prob="0.946" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18879" g_stop="18759" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="677" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18758" i_stop="18498" i_length="261">
            <donor d_prob="0.972" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18497" g_stop="18433" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="742" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-M6668-2" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6668-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21060" e_stop="20865"/>
          <exon e_start="19459" e_stop="19101"/>
          <exon e_start="18879" e_stop="18759"/>
          <exon e_start="18497" e_stop="18433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTTAGTTCAAAGTAGTGCCGCCAGTCGCCTAATTTACCTGATGGCGGGTGAAGTTGCGGCGGCGGAGGTTATCGGCGTCAAGCACTTGAGTTCGGCTGAAGCTGCGGCGGAGGAGGAGAAGCTACGTCTTCTCCGCGAAGCCGTCCATGCGCTGCCAGTGAGCGCCGTCAAAGATTTATGGTCCATTGGGGTGCGTTTGTTTTTTATTGATATTTTATAAAGCGATTAATTTTGTTTCTTAGAAAAGAGTTGAACTTTCTATGTTTTTGAGTTAGATTTCGTTATAAATTTAACTTGGTAGTTTTGTTTTTGAATGTTTAGTTTAATTCTGTGAAATAAAAACTTCAAATTTCTTGTAGTATCACATAGATATTCCTTTATTAGTACATTAGTGTATTCATTGAAACTATGGATTGTTTGGAGAAGAGAAAGAAAATGTCATGAAAGTGTTAGCTTTAGAGTTAATTCGAGCTAGAGTTCGTTCTACAAGCTTCTTCGAGATGTAATTAGATCATATACGATAGAAAGCTGAATCACTAGTAAAGAAATTGGGATGCAAAGTTTCTTAGTGAATCTTCATTTTCGTAGAGTAGGTTGGGTATGAAATGTACTGAGGTTCTAGAGTTCAAGTATCAGTTGATCATGTTATATGACATAGCAACTTTCAGCTTCAAGTCACAAAAAAAGAGCTATTTGAGTAAGTACATCATTTAAATTGGGAGATAAGGAGCTCTTACTACTGATTCCCTCTTTGTTATAGCAGGAGGATTTAAGCATGTCTTTTGATACTGTTACCATTATAAAAAAAAAGCATACGTCTTTTGATAAATTCCACATAAGCCCTCTCCTTTTATTTATTCACGGGATATCTTAGCTTCAAGGTGGGTTGACATAGTTGAACATTGCACTTTCTGGAAATGATGAGAGGAGCATTGAATTCTATACTTTCACATATATGATCATAAAAAGCTTTTGAGGACTACTTCTATAATCTATTTTACCTCCTGCTCCCCTCATCCACTGCAATCCACCCTGCCGCCAACGCATGCACTAACCTTTTGCATACCAGGGTGCATTCAGGTGCATGGGTCTTGGAAGGTGCTGCTTGTGGTTGGTAGAGAGGTTTGCAAGAACATTACGGGTGTAAAACTAAGTGATTGAATTTATTGATTTGTTTGCAAAATGACTAAAATGACTGAATTTTATGAACATTAATGTATTGGTGGACCAAAACTATATCTTCGCGTTAGTAAGAGTATTTTGTAAAAGTAGGTTTCTGGTGAATTAAGTCCATTTTTTGTAATTTCAAAGCCATGTCAAATGGCTTGTTGCACTATGCGATACTTGAGGAACTTTCTTCCTCTAAGGAAAGAAGTGAATAATTGGTAAAGGTAATCTGATTATTGACTATGCGATACTTGAGGAACTTTCTTCCTCTAAGGAAAGAAGTGAATAATTGGTGAAGGTAATCTGATTATTGACTATGGTCGGTCATCCATCTGTAATTAATTTGTCCAGTCAATGAGTAGAAGACATTTTCTATTAATTCTTAATCTAGCAACTCAAAGAACTTTTTTTTTTTAATTTTATTTTAGGCATGTGTTCGATGCATTTTCCGACTATTTGGACTTCATGAACTCATGTGTTCACATCCTTCACTCTCAATATCAAAGTGGTGTGATATTTTAGAAGATGTGATGAGAAACAAAGATGGAGAATTTAATGAGCAATCACATCAAGAACGATCAAGGGAGACAAACTTTTGCAAAATATGCTTAGGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAACTTGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTGCCTTCGGTTGTAACAGAAAATGATCAAGCAGTTTGGTAAGATTTTAGAGTCTGATGAATTTCTTTATCAATTTCATTCACGTTGGATAGGAGGGTCAGATGCCCCTCCAAAATACTTATGCTAATTTTCTTTCTTCGATCTGAAACTTATACTTAGATTTTGTTGTTTTCCACCATTAACTTCCATATATATATATATATATATATGTATGTATGCCTTTCTTATTTGAATACCTTCCAATATATTTTGTTTTCAGGTTGTATATGAAGAATAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTT-GGTAATGAAATCTTCTTTTCTGATCTCTTTTGCACCTCTTCTGTAATATCAATGTTTGACACTATGGGATTAGAATTATGTTGGTAATAATTGTTATTTTTCATTTGGTGTGAATATATATGATATATGATACCTTCAAATTGAGAAAGTCAATTGGGGGCAAACGTTCTAACTGAAATGCGTTCTGCTGATTGGTCAATATATAAACCTGTAAAATAAAGGATGTAAATGTATATATATTATGGGTTATTCACGTTTGCAGGGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAAC</genome_strand>
        <mrna_strand>ATTTATTTTAGTTCAAAGTAGTTCCGCCAGTCGCCTAATTTACCTTATGGCGGGTGAAGTTGCGGCGGCGGAGGTTACCGGCGTCAAGCACTTGAGTTCGGCTGAAGCTGCGGCGGAGGAGGAGAAGCTACATCTTCTACGCGAAGCCGTCCATGCGCTGCCAGTGAACGCCGTCAAAGATTTATGGTCCATTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGTTCGATGCATTTTTCGACTATTTGGACTTCATGAACTCATGTGTTCACATCCTTCACTCTCAATATCAAAGTGGTGTGATATTTTAGAAGATGTAATGAGAAAGAAAGATGGAGAATTTAATGAGCAATCACATCAAGAACGATCAAGGGAGACAAACTTCTGCAAAATTTGCTTAGGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAACATGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTACCTTCGGCAGTAACAGAAAATGATCAAGCAGTTTG.............................................................................................................................................................................................................................GTTGTATATGAAAAAAAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTGAAACTATTAGTGATAAATCCATTACAAAGATTGTTNG.....................................................................................................................................................................................................................................................................GGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M660-R" ref_strand="+" ref_description="SGN-M660-R CT239-R [rflp_markers_reverse]">
      <seq>tgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26591" stop="23020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26291" g_stop="26189" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="374" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="477" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23338" g_stop="23320" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="496" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-M660-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M660-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26291" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAG</genome_strand>
        <mrna_strand>TGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6669" ref_strand="+" ref_description="SGN-M6669 C2_At1g20430 [cosii_markers]">
      <seq>ccggggtcgaatttgtaaaccggccgaagtcaacctcccgtgatggctatccctgcaccaccatcgagctccgccgttcccggcggttatcagaaatctaagagatcgttaggtttctttgcaaacgcaatgaagaggaaagatagctttttacaattcttcgccatgacaggaattcttcttctgagtatgagatcgcttgggcaaaagtaccgcataaacgacctcgaggaggataacgccgcgctcaaggaagaacaagaagggctcgttcaccgaatgaaccatatcaagcaaagcctacttgctgaagctgctagtgagcccactggtgcctttgcttcccgtcttcgccgcctctttggtgatgaaagctgaaacagttgagtttgttgttctgtctgagtttgtatttcatatatatgtccaatattagcagaatttatagattttataatttgggatttttggagacttcatctcgacctggagtgttaaatttgaagccttttatcttcagatatcttaatttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="34497" stop="33363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34197" g_stop="33654" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-M6669" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34197" e_stop="33654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGGGTCGAATTTGTAAACCGGCCGAAGTCAACCTCCCGTGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGTCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGAT-TTTGGAGACTTCATCTTGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGATATCTTAATTTTTCACTTCTAAGG</genome_strand>
        <mrna_strand>CCGGGGTCGAATTTGTAAACCGGCCGAAGTCAACCTCCCGTGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGCCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTGTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGATTTTTGGAGACTTCATCTCGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGATATCTTAATTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8932" ref_strand="+" ref_description="SGN-M8932 C2_At5g42220 [cosii_markers]">
      <seq>cacatttcgtcattcagctaaatctctggccaaagttgacaccactcactctcctttgctccttccgatcccaatctccggcgaactcctgcttgtagttgttgtttctgaagtctcatggctgatcagcaagcagttgaagggtcaagcacaagtaatgattctggtggaagttctgaatcaaccgtggtgctcaacatcaagaccttagattcccagacgtatacttttaacatggataagaatttgcaagtttcagccttgaaggacaaactagcaagtcagattggtgtccctgttgagcagcaaagactaatttttaggggcaaggtcttgaaggataatcaccttctttctgaatatcatgtggaaaatggggacacactacatttagtgctgaggcagtctcaattgcaagctccatcaggtagcagcactggcgaagctactactaacaatgctaacagaggacaagagcctcaacccactgctggaggctcacggaatcgtatcgggcagatttcacacagtgttgtccttggaacttttaatgttggagatccgggggaaggacttgtgcctgatcttaatcgggttattggggcagttttaaacactgtagggattgggaacatgactggtggccagcttcccggtgtgcaggccagcgctccagctcctcgccctcaaggaaatgagagtttaagtcagtcaggaagtcagcaatctggacaggcattttctggtcaatctttgccgcaagtagtgcaaattccactgggggcagcaatagctgtcccctcaattaattttggcccttttggattccttgatcacgctttctgaattcatggatgggatggagcatgtattctcacggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="37203" stop="43891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37503" g_stop="37596" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37597" i_stop="40982" i_length="3386">
            <donor d_prob="0.986" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40983" g_stop="41135" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="246" r_length="152" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41136" i_stop="41455" i_length="320">
            <donor d_prob="0.261" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41456" g_stop="41573" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="364" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41574" i_stop="42526" i_length="953">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.459" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42527" g_stop="42631" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="469" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42632" i_stop="42743" i_length="112">
            <donor d_prob="0.944" d_score="0.92"/>
            <acceptor a_prob="0.462" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42744" g_stop="42868" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="594" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42869" i_stop="42960" i_length="92">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42961" g_stop="43029" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="663" r_length="69" r_score="0.928"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43030" i_stop="43282" i_length="253">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43283" g_stop="43432" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="814" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="43433" i_stop="43523" i_length="91">
            <donor d_prob="0.901" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="43524" g_stop="43592" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="883" r_length="69" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-M8932" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37503" e_stop="37596"/>
          <exon e_start="40983" e_stop="41135"/>
          <exon e_start="41456" e_stop="41573"/>
          <exon e_start="42527" e_stop="42631"/>
          <exon e_start="42744" e_stop="42868"/>
          <exon e_start="42961" e_stop="43029"/>
          <exon e_start="43283" e_stop="43432"/>
          <exon e_start="43524" e_stop="43592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGTGTAAGTTTCCGTCGTTATCTCTCCGGTAGAATCATGCTATGAATTTTAATCTGTTGAAAATCAATCGTAAATTAGGTTAAAAATGTTTTTATGTTGTTTGATTCGTATGAATAGAATTATACATTTAATCCTCTCTTGTTTCCATGATGTCTACAAAGTTTTGATGGTTACTAGTCAGTTTTGCCGCCAGTTTCCTCAACATTTTATCCAAGAAAATGAGGGGAAAAAGATTAAGATGTGATACATATCAATCATCTTTCAGATTTTTGTGGCTTTTCATTTTGGTGAAGTAAGTAGATTCATTTAAAGGCATCAAGAAGATGCAAGCTTAACAAGGATAGCTCAGTTAAGCTCACAACATTAAGGATCTGTAGCTTCCGTCGAAATCTTGCTAGTAGGTTTCCGTTGTATATCTCTCCGGCTGTTACGATTTTTAATCGTAAATTAGGTTAAAATGCTTTGTATAGTTTGATTCGTATGAATGTTCCAATCTCAATTTTGTGTATTCATTTCTTGCTGTTATTGCTTTACAAGCTTATGTAAGCTCTTGTTTGCGTGTTGTGTACAAAGGTTTGAATTTTGATGTCAGTTTCCTCAAATTTTTTTATCAAAGAAAATGAAAAAAGATAAAAGATCAAGGCAATACAAATCTTGCCGAATTTAAAGCTTTGGCTGTTGTTGACCTTATGTGTAGTATCATTGAGGGTTAGAAGTTTGATTCCATTTTTGGATTTGAATTACTGAAATCTCATGTGCTTTCATGTTTTCTTGACATATACAAAGTTTTGATGGTTACTAGTCAGTATTTGCGTCGGTTCCCTCAATATTTTATCCAAGAGAATGAGGGGAAAAAAAGATTAAGGCAATACATATCAATCATCTTTCAGTTTTTTGCTGAACTTCTCTTTTTTGATGAAGTAAGTAGAATCATTAAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGCTTAGTCGAGCTCACAAAAACAAGGATTTGTAGCTTCTTCCTAAACTATAGAGCTAAGAATATCCAAGAAGAGTTCTAAATTATTTACAAGGGTCAATCTGGATCAGCTGAAAAGGCTAACTACACATCTGCTTCTCAAAAGTTTTGTAGAAGTTGAAATTCCATCAAAACATTGTTTCTTCCGTTTGTCCATAAACACCAAAAGAGAGCACCAGGATCATCACCCAAATAGTCTTGATGGCTTTGTCAACTTCCCAAGAACTCCAACTTTCAAGAGCATCCCTATTAGAGAAAGGCATGACCCATAAAACAGCAAAACTATTTCAAAGGTCTGATGCAATCGAGCAGTGCAGTAGCTAGTGGTGGACGCTTTCTGTGTGCTTGTGGCTGAAGTAGCATCAGATGGCTAGCTGGAATTTCTTTTTTGGGGAGATTATTCTGTGTGATACTTTTTTTACTGAACTTAAAGCTCTAGCTTCTGTATGACCTTACGTGTAGTGTCATTGAGGATTAGAACTTTGATTCAACTTTTGGATTTGAGATACTGGAATTTCATATGTATTGCGACCTAGCCAATGGAAGCTGTATTCATATTTATCACTTGGTCTTAGGCTTGATTCTGGGAACTGCTGTCCCATCACCATTTAGATATTGCAATTCCTCATAGCAGATCACTTATAAGATCAACAGGGCAGGTTCCATGGACTAAAAGATATTGTAGGAGCTCACAACGGTCCATTTGTAGGTTAGGCTATCTAGCCTGTAAACCATTGTTTAGATATGTCAATAACTCATAAATGAAGCCCCAGCTGAGACATAAATGTTGAACATTTACTTATAAAAAGATAAAAGTTGAACATTTAGAGATCATATAGAAAGTACCATTTCAAATGATTGTATTATGAATTTACTTGTCTTTGTTAAAGATCCATTGTTTCGTCTCTTGAGAAGCAATAAAAACAAGATTAAAGGAAACAAGTGCTAACAGTATTGAAAAGGAAAGCATAACTAAAGAAATTGCGTAATTTCTCTCTCAAAAAAGAAATTGCCGGCCATGGTTATAAATTGCAAACTTAAGCTGTATGGGCACATCATATGGTGTACCCTAGTTTCCAAACACAATTGGCATGTAGGATAAGATTTCACTGTCTTATGACCTGAATAAATTAATGTATAATATCTGCTGCTTTTTTCTTGACCTGTGAGAGTGAAAGTTGCGTTCAAGGGATTGCCTGGCCTTCACTGAAGTCCAAAACCAATTACAAATATGCTGACAGTTGAGCTATAGAAAAGTGTGTATGAAGTTACAACAATCAGTATGTTCTCTTAAAAAGCTATTGGTAAATGCCAAGAGAATCCCCATCTTCTATGGGTTTGGTTGAACAACAAAGGTTGTGAAATGTGGAATGCAAAATGTGCCAAGTTTTATATTTAAGTGGAGAAGAGCAGATGTACAAGCCCATTATCCCCAAATTTCTCGGTCACAAAAAAAAAAATTAACAATAGAGTCTACAGACAATGCCACTATATTTATTTCATTAGTCCTTTGTTTGTGGTTCTGTGCAATTCTACATATTTACTTGCCACAACTATGCCAACATTAACTTGACATGAGTGAAACAAGGATGCATCTTAAAAATTCAAGTGTTGTCTGCAATCAAAGGCAGAGTGGATTTTTAGATTTGAATGGAAACAAAATTATTCTTTTTAAAACATAATACATTTGAATGGAAATAAATGTTGGAGGAGGGAATGGGAGGGGGTGAGAGAAAAGTTGGTTAGTGGATTTTTCTTTTTTGACATGATCTCATGTAGGTTGAGGATTGATGTGCATCTCGGGTTTATGATTTTCCGGGCTTCAACGTTCCCTTGTTGCTGGCTTTACATCACTGATATTCTTACAGTACCTACAAAAAAAGATTTGGGCTTCACCTTGGTATTAAAGGATGTGCAAAACAATTCTTCTTTTCATTCATGATTTTGCCATCCTTGGTCATTTTTATATTATTCCAAATGGATTCGTTTCTAAATTGTTCGAGTTTTAGTTTATTTTGCTTCTTTTTTGAGGTGGGTGGGGGGTGAGGGTGCATGTGGGAGGGTAAGGTTTTTTTTTGCTGCTAATTATGCTTTGTTGAATATTCTATCTTTGCTGCTCATGAATCTATATGTGTGATTTGTGTATTGTTAACTTCTCAAAAAAAAAAAAAAAGAATGAATGATTTGCATATTGACGGGTCTAGGCCTTCATTTAAAATATGTGGGTGGATGGTCTACCTTCCTGCCAAGGAGTTTTGGTTTTGCAGTTGCTCCTTGGTGATAGTTTGTCTCAACTATTTTGCACAGTGCTCTATAAATGCTTACCATCCATCAGAGTTTTCTCTTCAGGTAGTTGTTGTTTCAGCAGAGTTTTCTCTGCAGGTAGTTGTTGTTTCTGAAGTCTTCATGGCTGATCAGCAAGCAGTTGAAGGGTCAAGTACAAGTAATGATTCTGGTGGAAGTTCTGAATCAACCGTGGTTCTCAACATCAAGACCTTAGATTCCCAGACCTATACTTTTAACGTGGATAAGAATGTAAATTTTGTTACTTACTCTGTTTCTGTTGTGGGTTATGCTGAAAAAGAGTATTTACTACCATGCTTGTTCAGTTACATGCAGAGCTTTCTTAAATTTATGCTACTTCTGAAAAGTGATTTTTCCCCCTTTATTCTTGTTAGAAATAATATATTGAAACGTAGAGACCTTTTCTCGAATAAAAACTTATTGATATGAAGTTAAAATGTGGATTTTAGCACTTGGAGTCTTTTATCAATCACGTGCACTGTACTTCTCTGATACATCTCTTATTTGGAACTCATTGTCTACTTTACTTCTCTACCATGTCTCAATCTCAGTTGCAAGTTTCAGCCTTGAAGGACAAACTAGCAAGTCAGATTGGTGTACCTGTTGAGCAGCAGAGACTAATTTTTAGGGGCAAGGTCTTGAAGGATAATCACCTTCTTTCTGAATATTGTATCCTATCAACTGAGGATTTCAAGTTCCCCCCTCATTTTGTCTGCAGTTCGAGCACTCTATGCTGGAAATATTTCTTCTCTTTAAATTTGTTGGTCAGAGTTTTCTGTTAGATGTTTGTATATGTGTGTTTAGCTCCTTACATCTCTATTGAGGTAATTTCCAGGATTTCATCATTTCACATAAGCTTGTCCTACCTTTTCTGTTTCAAAACTGATAGCTGATTTTTAAATGCTTTGAAATTTTCTGAACTGATTCAGAAAGAAGCTCTAACTTGTGGTCATTGAGGGTGAAGTACACTGGAGTTCATGAGAATATACAAGTTTTGAACATAATTTGAAGTAGTTTTTCTTTAAACTGAAAACCCCTTCAAGTGAGATTACACAACTGCCACAAACCTGAACTGGGTCATAGTTTGAAACTCAGTTGATAATGAGCTCTCCCTCTACTCTCCGCTTAAATATTAGGCTTATTGTCTGCGGAAGGCCTCAAACGCATGACATATGCCTTATGTAGAAACCAAGAGTTGGGATGAATATAATGGAGAATTAGGTCTCTGTCTGCTTGTAATATTAATCTCCAGAGGGTAATACTTGTTGACTTTTGGTAATGCCACAAACCTAAATACCTCAAGATATCATATGCAACAAACCTAAATACCTCTAGATATCATATCTCGCTGATCCTTTACCCTGGTCATCTAGAAGGGTGTCCATGTTGGTTAGTAAGCTCAGTGAGTTGTTTCCAACTAACAAATGGATTGGTTTCTCACCTCTTAAGTCCTATCATGTCTATGATTAATTTTAGAGAGTTATCTTTGACCACCACATTAGTTGATACTTAAATGTTTTGTTTATACAACTTCACATGATTAGATGTAATATTTTCGCAAAAAATGGAGCCTCTTTCATCTTCAACTTTTGGGTTTCTTGCCAAAGCTTAACTCTTTCCAGATGTGGAAAATGGGGACACACTACATTTAGTGCTGAGGCAGTCTCAATTGCAAGCTCCATCAGGTGGTAGCAGTGGCGAAGCTACTACTAACAATGTTAACAGAGGTAAAGGCTTCGTGATCTGAAATTTAGGCTCTCAGGTCATTTGGCTGATTTGTTAGTCAGAGGTGTAACAAAAAAGAGGTAACGAACAATTTATTATCTTTGAGTATCACAGGACAAGAGCCTCAACCCACTGCTGGTGGCTCACGGAATCGTATCGGGCAGATTTCACACAGTGTTGTCCTTGGAACTTTTAATGTTGGAGATCCGGGGGAAGGACTTGTGCCTGATCTTAATCGGGTGGGTTGCATAGAAGTTGCAAGATTTTTTAATCACTGTTATTTGAGTTGATTTGGGAGAATCTTATAGCAGAAAAATATCCAACTTTATAGGTTATTGGGGCAGTTTTGAACACTGTAGGGATCGGGAACATGACCGGTGGACAGCTTCCTGGTGTGCAGGTTTTTTTCCCACCTTTTTATCTTATGTTTCGGATCTCTTAGGTTCACCTGCTACCTTTATATTTTACTGGAATTTCTCTCTATTGTGTCATTTGTGCGATGAGCCCTTTCAAGTTTCAAAGTTACAGGACTTTCACTTATATGGGACCTTTAATTTCACTTATGTTCACCTAGCAAGGTGCTGAGGAATTTCATTTACCATTGTTCATTGCTTCCTCGCTTATCTTTGCTTGGGGGGTTGGTTTGTGAACAGGCCAGCACTCCAGCTCCTCGCCCTCAAGGAAATGAGAGTTTAAGTCAGTCAGGAAGTCAGCAATCTGGGCAGGCATTTTCTGGTCAATCTTTGCCGCAAGTAGTGCAAATTCCTCTGGGGGCAGCAATAGCTGTCCCCTCAATTAA-TTTGGTAGAATGTCTTTCAGATATTATGTTTTTTCTGTCTCATGTTTTTCATGGCCATGTTTGATTCATTTATTTTTTTCTTTTTCATGTTGAAGCCCCTTTTGGATTCCTTGATCACGCTTTCTGAATTCATGGACGGGATGGAGCATGTATTCTCACAGAAT</genome_strand>
        <mrna_strand>CACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACACCACTCACTCTCCTTTGCTCCTTCCGATCCCAATCTCCGGCGAACTCCTGCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTGTTGTTTCTGAAGTC-TCATGGCTGATCAGCAAGCAGTTGAAGGGTCAAGCACAAGTAATGATTCTGGTGGAAGTTCTGAATCAACCGTGGTGCTCAACATCAAGACCTTAGATTCCCAGACGTATACTTTTAACATGGATAAGAAT................................................................................................................................................................................................................................................................................................................................TTGCAAGTTTCAGCCTTGAAGGACAAACTAGCAAGTCAGATTGGTGTCCCTGTTGAGCAGCAAAGACTAATTTTTAGGGGCAAGGTCTTGAAGGATAATCACCTTCTTTCTGAATATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGAAAATGGGGACACACTACATTTAGTGCTGAGGCAGTCTCAATTGCAAGCTCCATCAGGTAGCAGCACTGGCGAAGCTACTACTAACAATGCTAACAGAG................................................................................................................GACAAGAGCCTCAACCCACTGCTGGAGGCTCACGGAATCGTATCGGGCAGATTTCACACAGTGTTGTCCTTGGAACTTTTAATGTTGGAGATCCGGGGGAAGGACTTGTGCCTGATCTTAATCGG............................................................................................GTTATTGGGGCAGTTTTAAACACTGTAGGGATTGGGAACATGACTGGTGGCCAGCTTCCCGGTGTGCAG.............................................................................................................................................................................................................................................................GCCAGCGCTCCAGCTCCTCGCCCTCAAGGAAATGAGAGTTTAAGTCAGTCAGGAAGTCAGCAATCTGGACAGGCATTTTCTGGTCAATCTTTGCCGCAAGTAGTGCAAATTCCACTGGGGGCAGCAATAGCTGTCCCCTCAATTAATTTTG...........................................................................................GCCCTTTTGGATTCCTTGATCACGCTTTCTGAATTCATGGATGGGATGGAGCATGTATTCTCACGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6797" ref_strand="+" ref_description="SGN-M6797 C2_At1g42430 [cosii_markers]">
      <seq>tgaatctccatctgaatttcactcacttctagggctttatcaacacattcttctacctccaatggcatttttttgagcaataatggcgtcttcggcttcttccagaggattcacagcgcccataggggccacagttgaggtgtttcctacatcacataatggttttgtagaatttcgaaggaagaagaggagtagtatcggaggtttcttcagtatacaatgttgttgttcagattctgtaatgccaattagaggtggtagtggttctgggaatggcgttgataaaggtgacgatggaaggctcgattctaagaagatcactgctaattatatgagaactcaagcttcttccccaatgccctttgcatctcctcagtctagatttgtttcaaagccagaaaagttcttttcccgatgcaccccaagaaattcaggccctaagtcccgtgattctccaccaaaacgagacacgggtattgctaatgagaaagattggggcatcagtatgctaaatgataatgtcaatgaaactggagtaaacgaagacggcagtacatggtatcgggagagtggggaagaccttggtgacaatggataccgatgccgatggacaaggatgggtggtcagagcagtgatggtaccttagaatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="115902" stop="113182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115602" g_stop="115216" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115215" i_stop="113854" i_length="1362">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113853" g_stop="113762" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="467" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113761" i_stop="113669" i_length="93">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113668" g_stop="113482" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="654" r_length="187" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-M6797" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115602" e_stop="115216"/>
          <exon e_start="113853" e_stop="113762"/>
          <exon e_start="113668" e_stop="113482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTCCATCTGAACTTCACTCACTTCTAGGGCTTTATCAACACATTCTTCTACCTCCAATGGCATTCTTTTGAGCAATAATGGCGGCTTCGGCTTCTTCCAGAGGATTCACAGCGCCCATAGGGGCGGCTAAGCTGCCCACAGTTGAGGTGTTCCCTACATTACCTAATGGTTTTGTAGAATTTCGAAGGAAGAAGAGGAGTAGTACCGGAGGTTTCTTCAGTATACAATGTTGTTGTTCAGATTCTGTGATGCCAATTAGAGGTGGTAGTGGTTCTGGGAATGGCGTTGATAAAGGTGATGATGGGAGGTTCGATTCTAAGAAGATCACTGCTAATTATATGAGAACTCAAGCTTCTTCCCCAATGCCCTTTGCATCTCCTCAGTAAGTCAATTTTTATTTGCACTACATTTCTTGCAATCAATCTTCATAATAACTGGAATAGGTGGTTGAATTGTAAGAAATACTTTTTGAACCATGAATGACTAATATAATTAAATGAGGCAAATTTAGCAAAATGGATATTGAGGATTCATATAGGTGAACCGAAAAGGGTGTTGCTTGTTTGGTTATTGAATATTTTATTTTTTTGGGTTTCCCATCCTGTATCTAGTAACCACATTGTAGCCAAACTAATCCGGATTCCATTGATGAAAGCTCCCCACATCCTGTGGTTGTTGAACTTATAATAAGGTTAGTTAGTGTGTATTGTTATGTCCACTTGCAAAATTGTCAAACAATGTCATATTCAAAGTAAATCATTATCCATGATTAAGCTGAATCACTTCAAGGTTGGAGAGTGATTAGTAGTAATTTTCTTATTATTCTAAGAGCTAAAGTCACCTCCTTTATTAGGTTCTTAGGATGCTTTAGAAGTAATGTGATATTTATGTATGAAAGAATTAACTTTAGATGTTATTTGGCAGAAGCTGATGAGACATCACATGGGTTTGTTTGGACAGACATTATGATTAGCTTAAATGAAAACAAAAAAAAATATTTTCTTTCTGTCATTGATATGTTGTAGAGATTTGTATGTTTTGTTCTTTCCTATTCTGGTACAAAAGAGAATTTTGTATCATATTGTTTATCAACACCTGAACCCCTTTCAAATATGTTGCTTTTAGCAATCTGGATACCAGTTTGTATGGATTATACTGAGGTTAGTTTGAGCTCTTAGTCAGATATTGCTGTGTCCACTTGCAAAGTTCTTGAACAATTTCATATCAAAGTAATAGATTCTATTGCATCGAATTAATACATGCTTAAACTGCACTCAAGGTTGGTTGGACTAGTTAATAATAATCTTTTATTATAAGAGCTAAAGTTGCAACTTTTACGAGTTCCTAGGATATTCTAGTTATCTAAGAAGTAATCCGGAGGTAATTAGATAAAATCTGTTTGTTTCATTTCATACTATGAATTTTACAATTGATTTGGATGTATCTTCATGTTATTGTCAAGGCATGAAGAAAAATAAGAGATATTCTATTGTTAAAAAAATTCTGCGTTTTGTTAATATCACTTCCTCTATTTATGCTACTTATAGTTTTTGAATGGTCAATAACAAACCCTTCATTATAGGCCCGATAATCTTGATGTGGACTCCAAAGTAGTGTTTGACTTTCTAGCATCTCGAATATCTTCACGGTTTACAGACTCCATCTTTCCATGTTGTGTGTCCTGCATACTTGATTGGAAGTAGCTGTTTTTTTCGGTGATTTTCATCAACTTTTCTATACGCAGGTCTAGATTTGTTTCAAAGCCAGAAAAATTCTTTTCCCGATGCACCCCAAGAAGTTCAGGCCCTAAGTCCCGTGATTCTCCACCAAAACGAGGTAGTTATGGCTCCTTCCTTTTTGGTTTTTATAAGAGTGTTTCTCTTTTCAGATAAAATTGATAATTTCGTTTATCACCCTTCCTTTCTATAGACACGGGCATTGCTAATGAGAAAGATTGGGGCATCAGTATGCTAAATGATAATGTCAATGAAACTGGAGTAAACGAGGACGGCAGTACATGGTATCGGGAGAGTGGGGAAGACCTTGGTGACAATGGATACCGATGCCGATGGACAAGGATGGGTGGTCAGAGCAGTGATGGTACCTTAGAATGGAA</genome_strand>
        <mrna_strand>TGAATCTCCATCTGAATTTCACTCACTTCTAGGGCTTTATCAACACATTCTTCTACCTCCAATGGCATTTTTTTGAGCAATAATGGCGTCTTCGGCTTCTTCCAGAGGATTCACAGCGCCCATA--GG-GGC----C-----ACAGTTGAGGTGTTTCCTACATCACATAATGGTTTTGTAGAATTTCGAAGGAAGAAGAGGAGTAGTATCGGAGGTTTCTTCAGTATACAATGTTGTTGTTCAGATTCTGTAATGCCAATTAGAGGTGGTAGTGGTTCTGGGAATGGCGTTGATAAAGGTGACGATGGAAGGCTCGATTCTAAGAAGATCACTGCTAATTATATGAGAACTCAAGCTTCTTCCCCAATGCCCTTTGCATCTCCTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAGATTTGTTTCAAAGCCAGAAAAGTTCTTTTCCCGATGCACCCCAAGAAATTCAGGCCCTAAGTCCCGTGATTCTCCACCAAAACGAG.............................................................................................ACACGGGTATTGCTAATGAGAAAGATTGGGGCATCAGTATGCTAAATGATAATGTCAATGAAACTGGAGTAAACGAAGACGGCAGTACATGGTATCGGGAGAGTGGGGAAGACCTTGGTGACAATGGATACCGATGCCGATGGACAAGGATGGGTGGTCAGAGCAGTGATGGTACCTTAGAATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M118-R" ref_strand="+" ref_description="SGN-M118-R TG163-R [rflp_markers_reverse]">
      <seq>cttagaagcttccgcatgaaaatgaactgcaaacgtcatactagataaaattaaagagacctcttgcaaaattctacattccacctcagcagcgttaactccatcatgaacacatcaagaatacagatttggagggggatatactggagtgatacaaacattaataaaagagatgagtagtgtggcaaagggataatgagctcaaaagatggatcacgagttcatacttacttcgagttgtactgatttattttcttggaagatgaggcttgattgattctacaaccacctgttaggaaaaaaaatgctaaattaaaacatgaaaacacgtggtgccaattctcaacttaaaataagacaactctattagactattcatcatgtattagaaataatagcaaattgccaagaatacatgcacactcatgggaacattttctatgttatcctgaaattggctcagaagtccaacacaagaaaagacacagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="117704" stop="118794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118004" g_stop="118494" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-M118-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M118-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118004" e_stop="118494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGAAGCTTCCGCATGAAAATGAACTGCAAACGTCATACTAGATAAAATTAAAGAGACCTCTTGCAAAATTCTACATTCCACCTCAGCAGCGTTAACTCCATCATGAACACATCAAGAATACAGATTTGGAGGGGGATATACTGGAGTGATACAAACATTAATAAAAGAGATGAGTAGTGTGGCAAAGGGATAATGAGCTCAAAAGATGGATCACGAGTTCATACTTACTTCGAGTTGTACTGATTTATTTTCTTGGAAGATGAGGCTTGATTGATTCTACAACCACCTGTTAGGAAAAAAAATGCTAAATTAAAACATGAAAACACGTGGTGCCAATTCTCAACTTAAAATAAGACAACTCTATTAGACTATTCATCATGTATTAGAAATAATAGCAAATTGCCAAGAATACATGCACACTCATGGGAACATTTTCTATGTTATCCTGAAATTGGCTCAGAAGTCCAACACAAGAAAAGACACAGATG</genome_strand>
        <mrna_strand>CTTAGAAGCTTCCGCATGAAAATGAACTGCAAACGTCATACTAGATAAAATTAAAGAGACCTCTTGCAAAATTCTACATTCCACCTCAGCAGCGTTAACTCCATCATGAACACATCAAGAATACAGATTTGGAGGGGGATATACTGGAGTGATACAAACATTAATAAAAGAGATGAGTAGTGTGGCAAAGGGATAATGAGCTCAAAAGATGGATCACGAGTTCATACTTACTTCGAGTTGTACTGATTTATTTTCTTGGAAGATGAGGCTTGATTGATTCTACAACCACCTGTTAGGAAAAAAAATGCTAAATTAAAACATGAAAACACGTGGTGCCAATTCTCAACTTAAAATAAGACAACTCTATTAGACTATTCATCATGTATTAGAAATAATAGCAAATTGCCAAGAATACATGCACACTCATGGGAACATTTTCTATGTTATCCTGAAATTGGCTCAGAAGTCCAACACAAGAAAAGACACAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M118-F" ref_strand="+" ref_description="SGN-M118-F TG163-F [rflp_markers_forward]">
      <seq>tctgggatcatatatgggatcttagaatgctgaagtttccagtccttgatctccctggacatactcactggtaatactctgtggcaataatgaagctgcttgccatctctttaattagttgagtttttgatataagattattgtctggtccttcaatgtgtgtctcactatgctgcctacaacttaatgactgctaactttttttgttagggtttagggttagaagtttctttctggattaccatttccttattgagtaaatgcagttgatgtttgttcgcaggacatggactgtcaagtgcaatcccgaacatgaagacttaattctggttctttctcttcatttcctttatctgtttgtctaccctatgtatctggaaaacatacttgtgcacactctcactgagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="120155" stop="119146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119855" g_stop="119446" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-M118-F" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M118-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119855" e_stop="119446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTGGTAATACTCTGTGGCAATAATGAAGCTGCTTGCCATCTCTTTAATTAGTTGAGTTTTTGATATAAGATTATTGTCTGGTCCTTCAATGTGTGTCTCACTATGCTGCCTACAACTTAATGACTGCTAACTTTTTTTGTTAGGGTTTAGGGTTAGAAGTTTCTTTCTGGATTACCATTTCCTTATTGAGTAAATGCAGTTGATGTTTGTTCGCAGGACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTGGTTCTTTCTCTTCATTTCCTTTATCTGTTTGTCTACCCTATGTATCTGGAAAACATACTTGTGCACACTCTCACTGAGCC</genome_strand>
        <mrna_strand>TCTGGGAT-CATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTGGTAATACTCTGTGGCAATAATGAAGCTGCTTGCCATCTCTTTAATTAGTTGAGTTTTTGATATAAGATTATTGTCTGGTCCTTCAATGTGTGTCTCACTATGCTGCCTACAACTTAATGACTGCTAACTTTTTTTGTTAGGGTTTAGGGTTAGAAGTTTCTTTCTGGATTACCATTTCCTTATTGAGTAAATGCAGTTGATGTTTGTTCGCAGGACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTGGTTCTTTCTCTTCATTTCCTTTATCTGTTTGTCTACCCTATGTATCTGGAAAACATACTTGTGCACACTCTCACTGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6935" ref_strand="+" ref_description="SGN-M6935 C2_At1g63610 [cosii_markers]">
      <seq>gataatagggttttagcgaggaagagaaacaaaattcacgtaaaacaatccaaaagaaacacaattgataatgtcctcgctgacgttgaaaccaacgtttctgttacaggcatatggttcttcgtcttcgtcgtctgccggaagtcgacggctttgttctctgattagcttccagaagaaaacatttcgcaaacaaaaattcactctgagagctcaatccctcgattcaccgcaaaataacaacgaaaacgataccaaacctccaaatggctctatgcacaaaagcagaagggaaattctactggagtatgtgcaaaatgtacaaccggaattcatggagttgtttgtgaaaaaagcaccacaacaggtagttgaggcaatgcgccaaacagtgacaaacatgattggaacattacctccacaatttttcgccattactgtaaccacggtcgctgaaaatcttgctcagcttatgtatagtgtcttgatgactggatatatgtttaggaatgctcaatttcggttagaactgcaacaaagtctggaacaggctgcccttcctgaagcacaggaagaaaaggattcaccagattatgcatctggtacccagaaaaaggtgactggagaagtcataaggtggaataatgttacaggtcctgaaaaaatagacgcgttgaagtatatcgagttacttgaagcagaagtggaggaattgaatcgtcaaatggaaaggaaatctggtaatggttataatgagctgttggaatatctaaagactcttgagcctcaaaatatcaaggagctaaccagtacagctggagaagatgttgtgctcgccatgaattctttcattaagcgtctcttagctgtttcagatcctagtcaaatgaagactagtgtaacagagacaagtgccccagaacttgccaaacttctttattggctcatggtggttggttatagcatccggaatattgaagtccgctttgatatggaacgggtactaggcacttctccaaagctcgctgagctgcctcctggtgaaaatatttaggcatctctggaaagtgtctaatctatagcaagcattaaaacgttgaagcaacatacatttttcatgagctttacgatggtcaatagtaaaattttatcaagcttgtacgactatctgggaggacaacagtggaaattggttttagtgcattttcttcactcactcccagccccgctccccctattattctcagtttgggagcatcattaagacgctcatacaaaggaaatgtactataaattgatgcacaatgtaacttatgtgagttaatttgattcattgccctctaaaatgtacctctctgtttatgggaatgagaaattttgtggcttagatctccaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="125410" stop="129871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125710" g_stop="125986" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125987" i_stop="126125" i_length="139">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126126" g_stop="126215" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="367" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126216" i_stop="126456" i_length="241">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126457" g_stop="126537" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="448" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126538" i_stop="126661" i_length="124">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126662" g_stop="126793" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="580" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126794" i_stop="127925" i_length="1132">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="127926" g_stop="128144" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="799" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128145" i_stop="128455" i_length="311">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128456" g_stop="128548" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="892" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="128549" i_stop="129067" i_length="519">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="129068" g_stop="129570" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="893" r_stop="1395" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1396" polyA_stop="1414"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-M6935" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1395</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125710" e_stop="125986"/>
          <exon e_start="126126" e_stop="126215"/>
          <exon e_start="126457" e_stop="126537"/>
          <exon e_start="126662" e_stop="126793"/>
          <exon e_start="127926" e_stop="128144"/>
          <exon e_start="128456" e_stop="128548"/>
          <exon e_start="129068" e_stop="129570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATAGGGTTTTAGCGAGGAAGAGAAACAAAATTCACGTAAAACAATCCAAAAGAAACACAATTGATAATGTCCTCGCTGACGTTGAAACCAACGTTTCTGTTACAGGCATATGGTTCTTCGTCTTCGTCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAACGAAAACGATACCAAACCTCCAAATGGCTCTATGGTACTCAGTTTTTTTTCAGTGTTTGTATTGTTGTATTCATCTACCGTTTATATATAATTTTGAAATGTTAGTTCAATATTGTGACTTAAGTGTTGGAGAGCAGGTAGAAAGATTTCAATTTTAGTAAATGTTATTGCAGCACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACAGGTATTAGCAATAAAGTTTCGTACTTTGAAGATGTTTGTGCTTTTTTGGTTGATAGAACAGACATAATTGGCGCAAATAAGAGTGGAACGGTTATAGAGGAACTTGACTGATTTGAGATTGAGGCATAGTTTTTCTTTTTGTTGTTTAGTGCATGTAACTGAAACAGCTTAGACAACTTGAAATTCCTTTGAAATTCAAGGTACTAATGTAAACATATCCTGATCATTGATACCTGTGCTAGGTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTTTTCGCCATTACTGTAACCACGGTAAGTGGCTATGATCTCAATGCTTGCAAGCTGTGATATATGAGATGAGACATTCTTTGATTAAGGACGTATATGTCATCTCTGGAGCTGATGATGATTTTGGGTGATGTTGACTTTTACTTAGGTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAGGTAAGTTCTCTCTAGTGTGTGCTATTTCCGACTAATTGATTTTGTTGTCATTTCCTGGGACTGGATGAATTACTCTTTTTATGCCAATTAATGTAGCATTTTCAGTTTAGATAGTTATCTTCAGCCTGTCTTGGTTGTTTTGGAGTTGCTCATGCCTTTCCATCGAGTAGAAACTTCTTAGCATCACTTGGAAGATAAAAGACATTTAACACTAAATAGTAAAAAGACAAAACAGGAAAATGAAAGTTTAAAGACATTTCTCTCTACAGATCATCCATTGTCTTATTTTAGGTAGGCAATTTGCTGTGCTAATGCAAGAGATGCAAGGCAAAATGATATCAATCTGTTCGTAAAGCTATTTCTGGTTTCTCTTACTTTTCAATATAAGTTTTGGAATAGGAAATTTCTTTTGAGTTTAAAGATCACAATTTCACTAATAGAATTGTGACTGAATTATTGGAAAAGGTTGTATTAGCCTTTTAGCTTTCAAACCTATTCATAAGAGGCTTTCAGTTTGTCCCTGCATCTATGTTTTGCTTATTTATTGTATTTACCTCTTTTTTTCCATTATGCTGATGGAAGATAGAGTATTACATTCCTTATTCCTTTTTTATTTTGTTCTAAACTCAAGCGAATCAAGTCAAGAATAACTTTTTGGGTATTGAATATGTTTTAGAATCGACTTTCACTTTTCACATGTCCTTTAACCAGGCTTCCCTTTCAGTTTTTCACCTTATTTTCGGGACCGTTAAATCCTTGAGAGTGGTTGCTACTTGCAGAGTTACTCAAAACAAATGCTGTTGAAGCTATAGTTCCTGGGAATTATTATATCATACTATCGACTTGATGTTCTCAATGAGATCATGGTCTTACTGGTGATTTTACATTCATGACTTCTTACAATTGCTATCATGTTGTCTCAAGTATCCATTGCACAAATGCCCTTCTTTTAAAAAGACAATAATACTGCTTTCTTTTCTTTCCCTCTTTTTAGTTTTGGTTCATCTGAAGATGCGTACCGTTTGCTTGATATGTGAAGTTCATTCTGCCATTGTTAGATCTTCTACTTGAATCCCTGTTCTCACAAAGTAAATATTTCTGAGGAGTAACTATCACTCGTTTGACTGTTCAGGATTCACCAGATTATGCATCTGGTACCCAGAAAAAGGTGACTGGAGAAGTCATAAGGTGGAATAATGTTACAGGTCCTGAAAAAATAGACGCGTTGAAGTATATCGAGTTACTTGAAGCAGAAGTGGAGGAATTGAATCGTCAAATGGAAAGGAAATCTGGTAATGGTTATAATGAGCTGTTGGAATATCTAAAGACTCTTGAGCCTCAAAATATCAAGGTTAGCATGCTTGCTGCTTGAATTGGGGGAGGGTATTTGAACATTCTAAGATGGTTAATGTAGGTGGGAGGGTATTTGTACATTCCAGGATGCTTTAGCGTAAGTAGTTATTGCTTAAATGGTGTTTCTTTTTGTATTGGTATTCTGATTTTACATGACCACTATAGATGAGGAATACCTATTTTACAAATCTTGAAGTGCATGGATAGACAAGATATAACCTAGTAATTGAGTGCGTACTTATTTATATATAATTGTTAATTCTTAATGGAGAAGGTTATTCATTTTTATTCTACTCTGACATTTTGCAGGAGCTAACCAGTACAGCTGGAGAAGATGTTGTGCTCGCCATGAATTCTTTCATTAAGCGTCTCTTAGCTGTTTCAGATCCTAGTCAAATGAAGGTATAACATTTTTATTGGAACTTATTTTATGGTGTATGTATTTGTGATACTGCTTCTTTCACTTTTATAAAAGAAATATCAGTTGCACTGGTCATGTCATGATTCATTTCTGGTAAGTTTCTAAAATCATTCAGGCAGGCATGGCTTGTGTACATGTAAAGGATGTTGAAATATCACTTAAAAAACAAAAATATTTAGTTTTCACTAATCAATATGATTAACTTGTGTGTCCTTAGATCTTCTAGTATGAAGGGTGTGTTCAAAACTTCTCTCTCCATGTGCCTATTTTGACCAAAGCAGATTAGTTATCAACTATTGAGACTTATAAATCATGGGATCCTACAAAGAAGTGTCAAAATCTAATTAACAAACATTCTCTTTAAGACTTTGTGAAATAAGACGAACGTATTAATTATGTCTCTAATAATAAGATAGCAAAGCCTGCAAAACCTAAGTATATGCAAATGTAGACATAACAGTTTGTTGTATGCTCATCTTTTTCTTTGATATGGAATGCAGACTAGTGTAACAGAGACAAGTGCCCCAGAACTTGCCAAACTTCTTTATTGGCTCATGGTGGTTGGTTATAGCATCCGGAATATTGAAGTCCGCTTTGATATGGAACGGGTACTAGGCACTTCTCCAAAGCTCGCTGAGCTGCCTCCTGGTGAAAATATTTAGGCATCTCTGGAAAGTGTCTAATCTATAGCAAGCATTAAAACGTTGAAGCAACATACATTTTTCATGAGCTTTACGATGGTCAATAGTAAAATTTTATCAAGCTTGTACGACTATCTGGGAGGACAACAGTGGAAATTGGTTTTAGTGCATTTTCTTCACTCACTCCCAGCCCCGCTCCCCCTATTATTCTCAGTTTGGGAGCATCATTAAGACGCTCATACAAAGGAAATGTACTATAAATTGATGCACAATGTAACTTATGTGAGTTAATTTGATTCATTGCCCTCTAAAATGTACCTCTCTGTTTATGGGAATGAGAAATTTTGTGGCTTAGATCTCCA</genome_strand>
        <mrna_strand>GATAATAGGGTTTTAGCGAGGAAGAGAAACAAAATTCACGTAAAACAATCCAAAAGAAACACAATTGATAATGTCCTCGCTGACGTTGAAACCAACGTTTCTGTTACAGGCATATGGTTCTTCGTCTTCGTCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAACGAAAACGATACCAAACCTCCAAATGGCTCTATG...........................................................................................................................................CACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACAG.................................................................................................................................................................................................................................................GTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTTTTCGCCATTACTGTAACCACG............................................................................................................................GTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCACCAGATTATGCATCTGGTACCCAGAAAAAGGTGACTGGAGAAGTCATAAGGTGGAATAATGTTACAGGTCCTGAAAAAATAGACGCGTTGAAGTATATCGAGTTACTTGAAGCAGAAGTGGAGGAATTGAATCGTCAAATGGAAAGGAAATCTGGTAATGGTTATAATGAGCTGTTGGAATATCTAAAGACTCTTGAGCCTCAAAATATCAAG.......................................................................................................................................................................................................................................................................................................................GAGCTAACCAGTACAGCTGGAGAAGATGTTGTGCTCGCCATGAATTCTTTCATTAAGCGTCTCTTAGCTGTTTCAGATCCTAGTCAAATGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTGTAACAGAGACAAGTGCCCCAGAACTTGCCAAACTTCTTTATTGGCTCATGGTGGTTGGTTATAGCATCCGGAATATTGAAGTCCGCTTTGATATGGAACGGGTACTAGGCACTTCTCCAAAGCTCGCTGAGCTGCCTCCTGGTGAAAATATTTAGGCATCTCTGGAAAGTGTCTAATCTATAGCAAGCATTAAAACGTTGAAGCAACATACATTTTTCATGAGCTTTACGATGGTCAATAGTAAAATTTTATCAAGCTTGTACGACTATCTGGGAGGACAACAGTGGAAATTGGTTTTAGTGCATTTTCTTCACTCACTCCCAGCCCCGCTCCCCCTATTATTCTCAGTTTGGGAGCATCATTAAGACGCTCATACAAAGGAAATGTACTATAAATTGATGCACAATGTAACTTATGTGAGTTAATTTGATTCATTGCCCTCTAAAATGTACCTCTCTGTTTATGGGAATGAGAAATTTTGTGGCTTAGATCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="21060" PGL_stop="14683"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21060" e_stop="20865"/>
            <exon e_start="19459" e_stop="19101"/>
            <exon e_start="18879" e_stop="18759"/>
            <exon e_start="18497" e_stop="18383"/>
            <exon e_start="17733" e_stop="17570"/>
            <exon e_start="17457" e_stop="17386"/>
            <exon e_start="16492" e_stop="16424"/>
            <exon e_start="16335" e_stop="16255"/>
            <exon e_start="16175" e_stop="16056"/>
            <exon e_start="15943" e_stop="15869"/>
            <exon e_start="15754" e_stop="15674"/>
            <exon e_start="14877" e_stop="14804"/>
            <exon e_start="14721" e_stop="14683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.167" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.995" acc_prob="0.432" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21060" e_stop="20865" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.957">
            <gDNA_intron_boundary i_start="20864" i_stop="19460" i_length="1405"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19459" e_stop="19101" e_length="359"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.998">
            <gDNA_intron_boundary i_start="19100" i_stop="18880" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18879" e_stop="18759" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.981">
            <gDNA_intron_boundary i_start="18758" i_stop="18498" i_length="261"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18497" e_stop="18383" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.167">
            <gDNA_intron_boundary i_start="18382" i_stop="17734" i_length="649"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="17733" e_stop="17570" e_length="164"/>
          </exon>
          <intron i_serial="5" don_prob="0.936" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17569" i_stop="17458" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17457" e_stop="17386" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.432">
            <gDNA_intron_boundary i_start="17385" i_stop="16493" i_length="893"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16492" e_stop="16424" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="16423" i_stop="16336" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16335" e_stop="16255" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.925" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16254" i_stop="16176" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16175" e_stop="16056" e_length="120"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="16055" i_stop="15944" i_length="112"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="15943" e_stop="15869" e_length="75"/>
          </exon>
          <intron i_serial="10" don_prob="0.955" acc_prob="0.903">
            <gDNA_intron_boundary i_start="15868" i_stop="15755" i_length="114"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="15754" e_stop="15674" e_length="81"/>
          </exon>
          <intron i_serial="11" don_prob="0.928" acc_prob="0.909">
            <gDNA_intron_boundary i_start="15673" i_stop="14878" i_length="796"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="14877" e_stop="14804" e_length="74"/>
          </exon>
          <intron i_serial="12" don_prob="0.968" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14803" i_stop="14722" i_length="82"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="14721" e_stop="14683" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21060" stop="20865"/>
              <exon start="19459" stop="19101"/>
              <exon start="18879" stop="18759"/>
              <exon start="18497" stop="18383"/>
              <exon start="17733" stop="17570"/>
              <exon start="17457" stop="17386"/>
              <exon start="16492" stop="16424"/>
              <exon start="16335" stop="16255"/>
              <exon start="16175" stop="16056"/>
              <exon start="15943" stop="15869"/>
              <exon start="15754" stop="15674"/>
              <exon start="14877" stop="14804"/>
              <exon start="14721" stop="14683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21060" stop="20865"/>
              <exon start="19459" stop="19101"/>
              <exon start="18879" stop="18759"/>
              <exon start="18497" stop="18433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6668-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCATTTTAGTTCAAAGTAGTGCCGCCAGTCGCCTAATTTACCTGATGGCGGGTGAAGTTGCGGCGGCGGAGGTTATCGGCGTCAAGCACTTGAGTTCGGCTGAAGCTGCGGCGGAGGAGGAGAAGCTACGTCTTCTCCGCGAAGCCGTCCATGCGCTGCCAGTGAGCGCCGTCAAAGATTTATGGTCCATTGGG : GCATGTGTTCGATGCATTTTCCGACTATTTGGACTTCATGAACTCATGTGTTCACATCCTTCACTCTCAATATCAAAGTGGTGTGATATTTTAGAAGATGTGATGAGAAACAAAGATGGAGAATTTAATGAGCAATCACATCAAGAACGATCAAGGGAGACAAACTTTTGCAAAATATGCTTAGGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAACTTGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTGCCTTCGGTTGTAACAGAAAATGATCAAGCAGTTTG : GTTGTATATGAAGAATAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTTG : GGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAACAAGAGATGACGTTCAGGAAGGGAATGGAGGAAATAAGAGGAGGAAAACAG : ACAAAGCAGGTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAG : GTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAG : TATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAG : GAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGAT : GTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATAC : GTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAG : AAGCAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATATCATCACTAAAGGAATTG : AAAGTTGCTCAAAAAACGCCTATAAGGGTTCTTCATCGCCGAAGTCCATTGGAGAGAGAGAAAATTATACATTG : GATGCAAGTGGAGAGGGTATCTGGAAGCTCACAATATCT</gDNA_template>
            <first_frame> I  H  F  S  S  K  *  C  R  Q  S  P  N  L  P  D  G  G  *  S  C  G  G  G  G  Y  R  R  Q  A  L  E  F  G  *  S  C  G  G  G  G  E  A  T  S  S  P  R  S  R  P  C  A  A  S  E  R  R  Q  R  F  M  V  H  W   : G  M  C  S  M  H  F  P  T  I  W  T  S  *  T  H  V  F  T  S  F  T  L  N  I  K  V  V  *  Y  F  R  R  C  D  E  K  Q  R  W  R  I  *  *  A  I  T  S  R  T  I  K  G  D  K  L  L  Q  N  M  L  R  H  F  A  I  S  L  L  *  *  Y  W  N  F  I  K  K  V  *  C  R  *  L  C  C  S  N  F  *  T  C  K  A  T  I  S  T  N  *  *  F  F  S  *  S  L  I  A  F  G  C  N  R  K  *  S  S  S  L  :  V  V  Y  E  E  *  V  P  P  *  T  L  V  P  R  E  G  *  M  S  I  H  F  Y  K  R  H  L  Q  T  I  S  D  K  S  I  T  K  I  V   : G  C  K  I  Y  S  K  F  F  S  R  S  L  N  I  L  T  F  *  C  I  N  K  R  *  R  S  G  R  E  W  R  K  *  E  E  E  N  R :   Q  S  R  F  H  W  *  P  Q  D  N  W  G  I  C  Y  S  S  C  *  V  F  *  *  *  Y  C  *  W  R  W  T  D  *  S  L  S  Q  G  G  P  R  S  Q  L  *  *  L  N  G  *  V  R  *   : G  R  *  A  L  F  S  G  H  S  L  L  Q  K  L  Y  I  H  W  R  E  I  S  *   : V  F  E  K  C  E  P  D  T  L  G  Y  *  *  *  T  N  G  R  S  I  R  *   : G  N  N  R  W  G  H  P  S  Y  L  P  G  *  Q  L  *  V  S  C  C  R  *  G  G  H  *   : C  S  D  A  R  Y  R  P  S  F  S  C  R  D  T  K  C  T  P  S  P  F  *  S  T  H  K  R  N  R  E  E  N  *  *  S  R  K  S  I   : R  P  G  *  K  S  *  S  C  R  Q  S  R  V  G  P  H  A  *  R  R  G  R  E  A   : E  A  V  R  C  I  G  V  D  F  S  S  C  Q  *  *  R  F  A  N  Y  I  I  T  K  G  I   : E  S  C  S  K  N  A  Y  K  G  S  S  S  P  K  S  I  G  E  R  E  N  Y  T  L  :  D  A  S  G  E  G  I  W  K  L  T  I  S </first_frame>
            <second_frame>  F  I  L  V  Q  S  S  A  A  S  R  L  I  Y  L  M  A  G  E  V  A  A  A  E  V  I  G  V  K  H  L  S  S  A  E  A  A  A  E  E  E  K  L  R  L  L  R  E  A  V  H  A  L  P  V  S  A  V  K  D  L  W  S  I  G  :  A  C  V  R  C  I  F  R  L  F  G  L  H  E  L  M  C  S  H  P  S  L  S  I  S  K  W  C  D  I  L  E  D  V  M  R  N  K  D  G  E  F  N  E  Q  S  H  Q  E  R  S  R  E  T  N  F  C  K  I  C  L  G  I  L  Q  F  L  Y  Y  D  D  T  G  T  L  L  K  K  Y  S  A  D  D  F  A  V  V  I  S  E  L  V  K  Q  Q  Y  Q  Q  I  D  S  F  S  L  E  V  S  L  P  S  V  V  T  E  N  D  Q  A  V  W :   L  Y  M  K  N  K  Y  R  H  E  L  W  F  Q  E  K  A  E  C  Q  F  I  S  T  K  D  I  F  K  L  L  V  I  N  P  L  Q  R  L  L  :  G  V  K  S  T  Q  S  S  F  R  V  R  L  T  Y  S  H  S  D  A  L  T  R  D  D  V  Q  E  G  N  G  G  N  K  R  R  K  T   : D  K  A  G  F  T  G  D  L  K  T  T  G  E  S  V  T  P  H  V  E  S  F  D  S  N  I  V  D  G  D  G  L  T  K  V  C  P  K  E  A  Q  D  L  S  C  N  N  L  M  A  K  L  D  K  :  V  G  K  P  C  S  L  A  I  H  C  C  R  S  S  T  Y  I  G  G  R  Y  L  K  :  Y  S  R  N  V  S  Q  T  R  W  V  I  D  D  E  R  M  G  E  A  S  V  E  :  E  I  I  G  G  A  I  L  P  I  F  Q  G  D  N  Y  K  F  H  A  A  G  R  E  D  I  D  :  V  R  M  L  G  T  G  R  P  F  L  V  E  I  Q  N  A  R  Q  V  P  S  E  A  L  I  K  E  I  E  K  K  I  N  S  L  E  S  Q  Y  :  V  R  V  K  N  L  R  A  V  G  S  Q  G  W  D  L  M  R  E  G  E  A  E  K  Q  :  K  Q  Y  A  A  L  V  W  I  S  R  P  V  S  D  E  D  L  Q  T  I  S  S  L  K  E  L  :  K  V  A  Q  K  T  P  I  R  V  L  H  R  R  S  P  L  E  R  E  K  I  I  H  W :   M  Q  V  E  R  V  S  G  S  S  Q  Y   </second_frame>
            <third_frame>   S  F  *  F  K  V  V  P  P  V  A  *  F  T  *  W  R  V  K  L  R  R  R  R  L  S  A  S  S  T  *  V  R  L  K  L  R  R  R  R  R  S  Y  V  F  S  A  K  P  S  M  R  C  Q  *  A  P  S  K  I  Y  G  P  L  G :   H  V  F  D  A  F  S  D  Y  L  D  F  M  N  S  C  V  H  I  L  H  S  Q  Y  Q  S  G  V  I  F  *  K  M  *  *  E  T  K  M  E  N  L  M  S  N  H  I  K  N  D  Q  G  R  Q  T  F  A  K  Y  A  *  A  F  C  N  F  S  I  M  M  I  L  E  L  Y  *  K  S  I  V  P  M  T  L  L  *  *  F  L  N  L  *  S  N  N  I  N  K  L  I  V  F  L  L  K  S  H  C  L  R  L  *  Q  K  M  I  K  Q  F   : G  C  I  *  R  I  S  T  A  M  N  F  G  S  K  R  R  L  N  V  N  S  F  L  Q  K  T  S  S  N  Y  *  *  *  I  H  Y  K  D  C  W :   V  *  N  L  L  K  V  L  F  A  F  A  *  H  T  H  I  L  M  H  *  Q  E  M  T  F  R  K  G  M  E  E  I  R  G  G  K  Q  :  T  K  Q  V  S  L  V  T  S  R  Q  L  G  N  L  L  L  L  M  L  S  L  L  I  V  I  L  L  M  E  M  D  *  L  K  F  V  P  R  R  P  K  I  S  V  V  I  T  *  W  L  S  *  I  R :   S  V  S  L  V  L  W  P  F  I  A  A  E  A  L  H  T  L  E  G  D  I  L  S :   I  R  E  M  *  A  R  H  A  G  L  L  M  M  N  E  W  E  K  H  P  L  R :   K  *  *  V  G  P  S  F  L  S  S  R  V  T  I  I  S  F  M  L  P  V  G  R  T  L  M :   F  G  C  S  V  Q  A  V  L  F  L  *  R  Y  K  M  H  A  K  S  L  L  K  H  S  *  K  K  *  R  R  K  L  I  V  *  K  V  N  T :   S  G  L  K  I  L  E  L  *  A  V  K  G  G  T  S  C  V  K  E  R  Q  R  S  R :   S  S  T  L  H  W  C  G  F  L  V  L  S  V  M  K  I  C  K  L  Y  H  H  *  R  N  * :   K  L  L  K  K  R  L  *  G  F  F  I  A  E  V  H  W  R  E  R  K  L  Y  I   : G  C  K  W  R  G  Y  L  E  A  H  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21059" stop="20865"/>
                    <exon start="19459" stop="19101"/>
                    <exon start="18879" stop="18759"/>
                    <exon start="18497" stop="18383"/>
                    <exon start="17733" stop="17570"/>
                    <exon start="17457" stop="17386"/>
                    <exon start="16492" stop="16424"/>
                    <exon start="16335" stop="16255"/>
                    <exon start="16175" stop="16056"/>
                    <exon start="15943" stop="15869"/>
                    <exon start="15754" stop="15674"/>
                    <exon start="14877" stop="14804"/>
                    <exon start="14721" stop="14685"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1563</number_coding_nucleotides>
                  <number_encoded_amino_acids>521</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FILVQSSAASRLIYLMAGEVAAAEVIGVKHLSSAEAAAEEEKLRLLREAVHALPVSAVKDLWSIGACVRCIFRLFGLHELMCSHPSLSISKWCDILEDVMRNKDGEFNEQSHQERSRETNFCKICLGILQFLYYDDTGTLLKKYSADDFAVVISELVKQQYQQIDSFSLEVSLPSVVTENDQAVWLYMKNKYRHELWFQEKAECQFISTKDIFKLLVINPLQRLLGVKSTQSSFRVRLTYSHSDALTRDDVQEGNGGNKRRKTDKAGFTGDLKTTGESVTPHVESFDSNIVDGDGLTKVCPKEAQDLSCNNLMAKLDKVGKPCSLAIHCCRSSTYIGGRYLKYSRNVSQTRWVIDDERMGEASVEEIIGGAILPIFQGDNYKFHAAGREDIDVRMLGTGRPFLVEIQNARQVPSEALIKEIEKKINSLESQYVRVKNLRAVGSQGWDLMREGEAEKQKQYAALVWISRPVSDEDLQTISSLKELKVAQKTPIRVLHRRSPLEREKIIHWMQVERVSGSSQY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="26291" PGL_stop="23320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26291" e_stop="26189"/>
            <exon e_start="24302" e_stop="24032"/>
            <exon e_start="23537" e_stop="23435"/>
            <exon e_start="23338" e_stop="23320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26291" e_stop="26189" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.916">
            <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24302" e_stop="24032" e_length="271"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23537" e_stop="23435" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.988">
            <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23338" e_stop="23320" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26291" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M660-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG : GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG : GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG : GGAAAACCTATAGATTGAG</gDNA_template>
            <first_frame> *  L  M  V  N  F  L  V  L  I  S  T  R  S  P  M  T  I  S  L  S  I  S  T  T  A  W  M  N  L  F  Y  F  P   : G  T  E  Y  K  T  E  E  T  H  L  *  M  E  Y  M  E  Q  H  A  Q  Y  R  Q  G  E  I  T  H  S  I  Y  K  *  R  I  K  *  G  V  S  I  T  S  H  L  L  H  S  T  K  L  L  V  V  L  E  G  L  G  F  S  A  G  L  E  S  P  S  L  F  R  T  L  Q  T  T  T  P  S  S  L  E  I  G  T  K  R  T  T  R :   T  *  K  Q  F  L  T  E  A  G  S  Y  L  S  L  M  A  F  L  S  M  V  V  V  L  M  V  L  H  S  Q  S  I  K  :  G  K  P  I  D  *  </first_frame>
            <second_frame>  D  *  W  S  I  S  W  S  *  Y  Q  L  G  H  Q  *  Q  S  R  Y  Q  Y  P  Q  Q  L  G  *  T  F  S  T  F  L  :  E  R  S  T  K  Q  K  K  L  I  C  R  W  S  I  W  N  N  M  P  N  T  A  R  E  K  *  H  I  Q  S  T  S  E  G  S  N  R  E  F  L  L  L  P  I  S  C  I  P  Q  S  C  W  W  F  W  R  D  *  D  S  Q  Q  A  *  N  P  R  P  F  S  G  P  C  K  R  L  H  H  P  H  W  R  L  V  Q  K  E  P  H   : G  L  E  S  N  S  *  R  R  Q  E  V  T  F  P  *  W  H  S  Y  Q  W  S  W  S  *  W  C  Y  I  H  S  R  S  R :   E  N  L  *  I  E </second_frame>
            <third_frame>   I  N  G  Q  F  P  G  P  D  I  N  S  V  T  N  D  N  L  V  I  N  I  H  N  S  L  D  E  P  F  L  L  S  W :   N  G  V  Q  N  R  R  N  S  F  V  D  G  V  Y  G  T  T  C  P  I  P  P  G  R  N  N  T  F  N  L  Q  V  K  D  Q  I  G  S  F  Y  Y  F  P  S  L  A  F  H  K  A  A  G  G  F  G  G  I  R  I  L  S  R  P  R  I  P  V  P  F  P  D  P  A  N  D  Y  T  I  L  I  G  D  W  Y  K  K  N  H  T  :  D  L  K  A  I  L  D  G  G  R  K  L  P  F  P  D  G  I  L  I  N  G  R  G  P  N  G  V  T  F  T  V  D  Q   : G  K  T  Y  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26289" stop="26189"/>
                    <exon start="24302" stop="24032"/>
                    <exon start="23537" stop="23435"/>
                    <exon start="23338" stop="23322"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INGQFPGPDINSVTNDNLVINIHNSLDEPFLLSWNGVQNRRNSFVDGVYGTTCPIPPGRNNTFNLQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPANDYTILIGDWYKKNHTDLKAILDGGRKLPFPDGILINGRGPNGVTFTVDQGKTYRL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="34197" PGL_stop="33654"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34197" e_stop="33654"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="34197" e_stop="33654" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34197" stop="33654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6669" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGGGGTCGAATTTGTAAACCGGCCGAAGTCAACCTCCCGTGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGTCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGATTTTGGAGACTTCATCTTGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGATATCTTAATTTTTCACTTCTAAGG</gDNA_template>
            <first_frame> P  G  S  N  L  *  T  G  R  S  Q  P  P  V  M  A  I  P  A  P  P  S  S  S  A  V  P  G  G  Y  Q  K  S  K  R  S  L  G  F  F  A  N  A  M  K  R  K  D  S  F  L  Q  F  F  A  M  T  G  I  L  L  L  S  M  R  S  L  G  Q  K  Y  R  I  N  D  L  E  E  D  N  A  A  L  K  E  E  Q  E  G  L  V  H  R  M  N  H  I  K  Q  S  L  L  A  E  A  A  S  E  P  T  G  A  F  A  S  R  L  R  R  L  F  G  D  E  S  *  N  S  *  V  F  C  S  V  *  V  C  I  S  Y  I  C  P  I  L  A  E  F  I  D  F  I  I  W  D  F  G  D  F  I  L  T  W  S  V  K  F  E  A  F  Y  L  Q  I  S  *  F  F  T  S  K  </first_frame>
            <second_frame>  R  G  R  I  C  K  P  A  E  V  N  L  P  *  W  L  S  L  H  H  H  R  A  P  P  F  P  A  V  I  R  N  L  R  D  R  *  V  S  L  Q  T  Q  *  R  G  K  I  A  F  Y  N  S  S  P  *  Q  E  F  F  F  *  V  *  D  R  L  G  K  S  T  A  *  T  T  S  R  R  I  T  P  R  S  R  K  N  K  K  G  S  F  T  E  *  T  I  S  S  K  V  Y  L  L  K  L  L  V  S  P  L  V  P  L  L  P  V  F  A  A  S  L  V  M  K  A  E  T  V  E  F  F  V  L  S  E  F  V  F  H  I  Y  V  Q  Y  *  Q  N  L  *  I  L  *  F  G  I  L  E  T  S  S  *  P  G  V  L  N  L  K  P  F  I  F  R  Y  L  N  F  S  L  L  R </second_frame>
            <third_frame>   G  V  E  F  V  N  R  P  K  S  T  S  R  D  G  Y  P  C  T  T  I  E  L  R  R  S  R  R  L  S  E  I  *  E  I  V  R  F  L  C  K  R  N  E  E  E  R  *  L  F  T  I  L  R  H  D  R  N  S  S  S  E  Y  E  I  A  W  A  K  V  P  H  K  R  P  R  G  G  *  R  R  A  Q  G  R  T  R  R  A  R  S  P  N  E  P  Y  Q  A  K  S  T  C  *  S  C  *  *  A  H  W  C  L  C  F  P  S  S  P  P  L  W  *  *  K  L  K  Q  L  S  F  L  F  C  L  S  L  Y  F  I  Y  M  S  N  I  S  R  I  Y  R  F  Y  N  L  G  F  W  R  L  H  L  D  L  E  C  *  I  *  S  L  L  S  S  D  I  L  I  F  H  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34179" stop="33820"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGRSQPPVMAIPAPPSSSAVPGGYQKSKRSLGFFANAMKRKDSFLQFFAMTGILLLSMRSLGQKYRINDLEEDNAALKEEQEGLVHRMNHIKQSLLAEAASEPTGAFASRLRRLFGDES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="37503" PGL_stop="43592"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37503" e_stop="37596"/>
            <exon e_start="40983" e_stop="41135"/>
            <exon e_start="41456" e_stop="41573"/>
            <exon e_start="42527" e_stop="42631"/>
            <exon e_start="42744" e_stop="42868"/>
            <exon e_start="42961" e_stop="43029"/>
            <exon e_start="43283" e_stop="43432"/>
            <exon e_start="43524" e_stop="43592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.000" e_score="0.947"/>
          <exon-intron don_prob="0.261" acc_prob="0.974" e_score="0.967"/>
          <exon-intron don_prob="0.900" acc_prob="0.459" e_score="0.975"/>
          <exon-intron don_prob="0.944" acc_prob="0.462" e_score="0.962"/>
          <exon-intron don_prob="0.936" acc_prob="0.996" e_score="0.992"/>
          <exon-intron don_prob="0.990" acc_prob="0.952" e_score="0.928"/>
          <exon-intron don_prob="0.901" acc_prob="0.984" e_score="0.967"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="37503" e_stop="37596" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37597" i_stop="40982" i_length="3386"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="40983" e_stop="41135" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.261" acc_prob="0.974">
            <gDNA_intron_boundary i_start="41136" i_stop="41455" i_length="320"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="41456" e_stop="41573" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.459">
            <gDNA_intron_boundary i_start="41574" i_stop="42526" i_length="953"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="42527" e_stop="42631" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.462">
            <gDNA_intron_boundary i_start="42632" i_stop="42743" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="42744" e_stop="42868" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.936" acc_prob="0.996">
            <gDNA_intron_boundary i_start="42869" i_stop="42960" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="0.928">
            <gDNA_exon_boundary e_start="42961" e_stop="43029" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.952">
            <gDNA_intron_boundary i_start="43030" i_stop="43282" i_length="253"/>
          </intron>
          <exon e_serial="7" e_score="0.967">
            <gDNA_exon_boundary e_start="43283" e_stop="43432" e_length="150"/>
          </exon>
          <intron i_serial="7" don_prob="0.901" acc_prob="0.984">
            <gDNA_intron_boundary i_start="43433" i_stop="43523" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="0.942">
            <gDNA_exon_boundary e_start="43524" e_stop="43592" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37503" stop="37596"/>
              <exon start="40983" stop="41135"/>
              <exon start="41456" stop="41573"/>
              <exon start="42527" stop="42631"/>
              <exon start="42744" stop="42868"/>
              <exon start="42961" stop="43029"/>
              <exon start="43283" stop="43432"/>
              <exon start="43524" stop="43592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGT : GTAGTTGTTGTTTCTGAAGTCTTCATGGCTGATCAGCAAGCAGTTGAAGGGTCAAGTACAAGTAATGATTCTGGTGGAAGTTCTGAATCAACCGTGGTTCTCAACATCAAGACCTTAGATTCCCAGACCTATACTTTTAACGTGGATAAGAAT : TTGCAAGTTTCAGCCTTGAAGGACAAACTAGCAAGTCAGATTGGTGTACCTGTTGAGCAGCAGAGACTAATTTTTAGGGGCAAGGTCTTGAAGGATAATCACCTTCTTTCTGAATATT : ATGTGGAAAATGGGGACACACTACATTTAGTGCTGAGGCAGTCTCAATTGCAAGCTCCATCAGGTGGTAGCAGTGGCGAAGCTACTACTAACAATGTTAACAGAG : GACAAGAGCCTCAACCCACTGCTGGTGGCTCACGGAATCGTATCGGGCAGATTTCACACAGTGTTGTCCTTGGAACTTTTAATGTTGGAGATCCGGGGGAAGGACTTGTGCCTGATCTTAATCGG : GTTATTGGGGCAGTTTTGAACACTGTAGGGATCGGGAACATGACCGGTGGACAGCTTCCTGGTGTGCAG : GCCAGCACTCCAGCTCCTCGCCCTCAAGGAAATGAGAGTTTAAGTCAGTCAGGAAGTCAGCAATCTGGGCAGGCATTTTCTGGTCAATCTTTGCCGCAAGTAGTGCAAATTCCTCTGGGGGCAGCAATAGCTGTCCCCTCAATTAATTTG : CCCCTTTTGGATTCCTTGATCACGCTTTCTGAATTCATGGACGGGATGGAGCATGTATTCTCACAGAAT</gDNA_template>
            <first_frame> H  I  S  S  F  S  *  I  S  G  Q  S  *  R  H  S  L  S  F  A  P  S  D  L  N  L  R  *  T  P  A   : C  S  C  C  F  *  S  L  H  G  *  S  A  S  S  *  R  V  K  Y  K  *  *  F  W  W  K  F  *  I  N  R  G  S  Q  H  Q  D  L  R  F  P  D  L  Y  F  *  R  G  *  E   : F  A  S  F  S  L  E  G  Q  T  S  K  S  D  W  C  T  C  *  A  A  E  T  N  F  *  G  Q  G  L  E  G  *  S  P  S  F  *  I  L :   C  G  K  W  G  H  T  T  F  S  A  E  A  V  S  I  A  S  S  I  R  W  *  Q  W  R  S  Y  Y  *  Q  C  *  Q  R :   T  R  A  S  T  H  C  W  W  L  T  E  S  Y  R  A  D  F  T  Q  C  C  P  W  N  F  *  C  W  R  S  G  G  R  T  C  A  *  S  *  S   : G  Y  W  G  S  F  E  H  C  R  D  R  E  H  D  R  W  T  A  S  W  C  A   : G  Q  H  S  S  S  S  P  S  R  K  *  E  F  K  S  V  R  K  S  A  I  W  A  G  I  F  W  S  I  F  A  A  S  S  A  N  S  S  G  G  S  N  S  C  P  L  N  *  F   : A  P  F  G  F  L  D  H  A  F  *  I  H  G  R  D  G  A  C  I  L  T  E  </first_frame>
            <second_frame>  T  F  R  H  S  A  K  S  L  A  K  V  D  A  I  H  S  P  L  L  L  P  I  S  I  S  G  E  L  L  R  :  V  V  V  V  S  E  V  F  M  A  D  Q  Q  A  V  E  G  S  S  T  S  N  D  S  G  G  S  S  E  S  T  V  V  L  N  I  K  T  L  D  S  Q  T  Y  T  F  N  V  D  K  N  :  L  Q  V  S  A  L  K  D  K  L  A  S  Q  I  G  V  P  V  E  Q  Q  R  L  I  F  R  G  K  V  L  K  D  N  H  L  L  S  E  Y   : Y  V  E  N  G  D  T  L  H  L  V  L  R  Q  S  Q  L  Q  A  P  S  G  G  S  S  G  E  A  T  T  N  N  V  N  R   : G  Q  E  P  Q  P  T  A  G  G  S  R  N  R  I  G  Q  I  S  H  S  V  V  L  G  T  F  N  V  G  D  P  G  E  G  L  V  P  D  L  N  R  :  V  I  G  A  V  L  N  T  V  G  I  G  N  M  T  G  G  Q  L  P  G  V  Q  :  A  S  T  P  A  P  R  P  Q  G  N  E  S  L  S  Q  S  G  S  Q  Q  S  G  Q  A  F  S  G  Q  S  L  P  Q  V  V  Q  I  P  L  G  A  A  I  A  V  P  S  I  N  L  :  P  L  L  D  S  L  I  T  L  S  E  F  M  D  G  M  E  H  V  F  S  Q  N </second_frame>
            <third_frame>   H  F  V  I  Q  L  N  L  W  P  K  L  T  P  F  T  L  L  C  S  F  R  S  Q  S  P  V  N  S  C  V :   *  L  L  F  L  K  S  S  W  L  I  S  K  Q  L  K  G  Q  V  Q  V  M  I  L  V  E  V  L  N  Q  P  W  F  S  T  S  R  P  *  I  P  R  P  I  L  L  T  W  I  R  I :   C  K  F  Q  P  *  R  T  N  *  Q  V  R  L  V  Y  L  L  S  S  R  D  *  F  L  G  A  R  S  *  R  I  I  T  F  F  L  N  I  :  M  W  K  M  G  T  H  Y  I  *  C  *  G  S  L  N  C  K  L  H  Q  V  V  A  V  A  K  L  L  L  T  M  L  T  E  :  D  K  S  L  N  P  L  L  V  A  H  G  I  V  S  G  R  F  H  T  V  L  S  L  E  L  L  M  L  E  I  R  G  K  D  L  C  L  I  L  I  G :   L  L  G  Q  F  *  T  L  *  G  S  G  T  *  P  V  D  S  F  L  V  C  R :   P  A  L  Q  L  L  A  L  K  E  M  R  V  *  V  S  Q  E  V  S  N  L  G  R  H  F  L  V  N  L  C  R  K  *  C  K  F  L  W  G  Q  Q  *  L  S  P  Q  L  I  C :   P  F  W  I  P  *  S  R  F  L  N  S  W  T  G  W  S  M  Y  S  H  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37504" stop="37596"/>
                    <exon start="40983" stop="41135"/>
                    <exon start="41456" stop="41573"/>
                    <exon start="42527" stop="42631"/>
                    <exon start="42744" stop="42868"/>
                    <exon start="42961" stop="43029"/>
                    <exon start="43283" stop="43432"/>
                    <exon start="43524" stop="43592"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFRHSAKSLAKVDAIHSPLLLPISISGELLRVVVVSEVFMADQQAVEGSSTSNDSGGSSESTVVLNIKTLDSQTYTFNVDKNLQVSALKDKLASQIGVPVEQQRLIFRGKVLKDNHLLSEYYVENGDTLHLVLRQSQLQAPSGGSSGEATTNNVNRGQEPQPTAGGSRNRIGQISHSVVLGTFNVGDPGEGLVPDLNRVIGAVLNTVGIGNMTGGQLPGVQASTPAPRPQGNESLSQSGSQQSGQAFSGQSLPQVVQIPLGAAIAVPSINLPLLDSLITLSEFMDGMEHVFSQN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="115602" PGL_stop="113482"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115602" e_stop="115216"/>
            <exon e_start="113853" e_stop="113762"/>
            <exon e_start="113668" e_stop="113482"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.900" e_score="0.941"/>
          <exon-intron don_prob="0.987" acc_prob="0.986" e_score="0.978"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="115602" e_stop="115216" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.900">
            <gDNA_intron_boundary i_start="115215" i_stop="113854" i_length="1362"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="113853" e_stop="113762" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.986">
            <gDNA_intron_boundary i_start="113761" i_stop="113669" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="113668" e_stop="113482" e_length="187"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115602" stop="115216"/>
              <exon start="113853" stop="113762"/>
              <exon start="113668" stop="113482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6797" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATCTCCATCTGAACTTCACTCACTTCTAGGGCTTTATCAACACATTCTTCTACCTCCAATGGCATTCTTTTGAGCAATAATGGCGGCTTCGGCTTCTTCCAGAGGATTCACAGCGCCCATAGGGGCGGCTAAGCTGCCCACAGTTGAGGTGTTCCCTACATTACCTAATGGTTTTGTAGAATTTCGAAGGAAGAAGAGGAGTAGTACCGGAGGTTTCTTCAGTATACAATGTTGTTGTTCAGATTCTGTGATGCCAATTAGAGGTGGTAGTGGTTCTGGGAATGGCGTTGATAAAGGTGATGATGGGAGGTTCGATTCTAAGAAGATCACTGCTAATTATATGAGAACTCAAGCTTCTTCCCCAATGCCCTTTGCATCTCCTCA : GTCTAGATTTGTTTCAAAGCCAGAAAAATTCTTTTCCCGATGCACCCCAAGAAGTTCAGGCCCTAAGTCCCGTGATTCTCCACCAAAACGAG : ACACGGGCATTGCTAATGAGAAAGATTGGGGCATCAGTATGCTAAATGATAATGTCAATGAAACTGGAGTAAACGAGGACGGCAGTACATGGTATCGGGAGAGTGGGGAAGACCTTGGTGACAATGGATACCGATGCCGATGGACAAGGATGGGTGGTCAGAGCAGTGATGGTACCTTAGAATGGAA</gDNA_template>
            <first_frame> *  I  S  I  *  T  S  L  T  S  R  A  L  S  T  H  S  S  T  S  N  G  I  L  L  S  N  N  G  G  F  G  F  F  Q  R  I  H  S  A  H  R  G  G  *  A  A  H  S  *  G  V  P  Y  I  T  *  W  F  C  R  I  S  K  E  E  E  E  *  Y  R  R  F  L  Q  Y  T  M  L  L  F  R  F  C  D  A  N  *  R  W  *  W  F  W  E  W  R  *  *  R  *  *  W  E  V  R  F  *  E  D  H  C  *  L  Y  E  N  S  S  F  F  P  N  A  L  C  I  S  S  :  V  *  I  C  F  K  A  R  K  I  L  F  P  M  H  P  K  K  F  R  P  *  V  P  *  F  S  T  K  T  R :   H  G  H  C  *  *  E  R  L  G  H  Q  Y  A  K  *  *  C  Q  *  N  W  S  K  R  G  R  Q  Y  M  V  S  G  E  W  G  R  P  W  *  Q  W  I  P  M  P  M  D  K  D  G  W  S  E  Q  *  W  Y  L  R  M  E </first_frame>
            <second_frame>  E  S  P  S  E  L  H  S  L  L  G  L  Y  Q  H  I  L  L  P  P  M  A  F  F  *  A  I  M  A  A  S  A  S  S  R  G  F  T  A  P  I  G  A  A  K  L  P  T  V  E  V  F  P  T  L  P  N  G  F  V  E  F  R  R  K  K  R  S  S  T  G  G  F  F  S  I  Q  C  C  C  S  D  S  V  M  P  I  R  G  G  S  G  S  G  N  G  V  D  K  G  D  D  G  R  F  D  S  K  K  I  T  A  N  Y  M  R  T  Q  A  S  S  P  M  P  F  A  S  P  Q :   S  R  F  V  S  K  P  E  K  F  F  S  R  C  T  P  R  S  S  G  P  K  S  R  D  S  P  P  K  R   : D  T  G  I  A  N  E  K  D  W  G  I  S  M  L  N  D  N  V  N  E  T  G  V  N  E  D  G  S  T  W  Y  R  E  S  G  E  D  L  G  D  N  G  Y  R  C  R  W  T  R  M  G  G  Q  S  S  D  G  T  L  E  W   </second_frame>
            <third_frame>   N  L  H  L  N  F  T  H  F  *  G  F  I  N  T  F  F  Y  L  Q  W  H  S  F  E  Q  *  W  R  L  R  L  L  P  E  D  S  Q  R  P  *  G  R  L  S  C  P  Q  L  R  C  S  L  H  Y  L  M  V  L  *  N  F  E  G  R  R  G  V  V  P  E  V  S  S  V  Y  N  V  V  V  Q  I  L  *  C  Q  L  E  V  V  V  V  L  G  M  A  L  I  K  V  M  M  G  G  S  I  L  R  R  S  L  L  I  I  *  E  L  K  L  L  P  Q  C  P  L  H  L  L   : S  L  D  L  F  Q  S  Q  K  N  S  F  P  D  A  P  Q  E  V  Q  A  L  S  P  V  I  L  H  Q  N  E  :  T  R  A  L  L  M  R  K  I  G  A  S  V  C  *  M  I  M  S  M  K  L  E  *  T  R  T  A  V  H  G  I  G  R  V  G  K  T  L  V  T  M  D  T  D  A  D  G  Q  G  W  V  V  R  A  V  M  V  P  *  N  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115526" stop="115216"/>
                    <exon start="113853" stop="113762"/>
                    <exon start="113668" stop="113484"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIMAASASSRGFTAPIGAAKLPTVEVFPTLPNGFVEFRRKKRSSTGGFFSIQCCCSDSVMPIRGGSGSGNGVDKGDDGRFDSKKITANYMRTQASSPMPFASPQSRFVSKPEKFFSRCTPRSSGPKSRDSPPKRDTGIANEKDWGISMLNDNVNETGVNEDGSTWYRESGEDLGDNGYRCRWTRMGGQSSDGTLEW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="118004" PGL_stop="118494"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118004" e_stop="118494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118004" e_stop="118494" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118004" stop="118494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M118-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAGAAGCTTCCGCATGAAAATGAACTGCAAACGTCATACTAGATAAAATTAAAGAGACCTCTTGCAAAATTCTACATTCCACCTCAGCAGCGTTAACTCCATCATGAACACATCAAGAATACAGATTTGGAGGGGGATATACTGGAGTGATACAAACATTAATAAAAGAGATGAGTAGTGTGGCAAAGGGATAATGAGCTCAAAAGATGGATCACGAGTTCATACTTACTTCGAGTTGTACTGATTTATTTTCTTGGAAGATGAGGCTTGATTGATTCTACAACCACCTGTTAGGAAAAAAAATGCTAAATTAAAACATGAAAACACGTGGTGCCAATTCTCAACTTAAAATAAGACAACTCTATTAGACTATTCATCATGTATTAGAAATAATAGCAAATTGCCAAGAATACATGCACACTCATGGGAACATTTTCTATGTTATCCTGAAATTGGCTCAGAAGTCCAACACAAGAAAAGACACAGATG</gDNA_template>
            <first_frame> L  R  S  F  R  M  K  M  N  C  K  R  H  T  R  *  N  *  R  D  L  L  Q  N  S  T  F  H  L  S  S  V  N  S  I  M  N  T  S  R  I  Q  I  W  R  G  I  Y  W  S  D  T  N  I  N  K  R  D  E  *  C  G  K  G  I  M  S  S  K  D  G  S  R  V  H  T  Y  F  E  L  Y  *  F  I  F  L  E  D  E  A  *  L  I  L  Q  P  P  V  R  K  K  N  A  K  L  K  H  E  N  T  W  C  Q  F  S  T  *  N  K  T  T  L  L  D  Y  S  S  C  I  R  N  N  S  K  L  P  R  I  H  A  H  S  W  E  H  F  L  C  Y  P  E  I  G  S  E  V  Q  H  K  K  R  H  R   </first_frame>
            <second_frame>  L  E  A  S  A  *  K  *  T  A  N  V  I  L  D  K  I  K  E  T  S  C  K  I  L  H  S  T  S  A  A  L  T  P  S  *  T  H  Q  E  Y  R  F  G  G  G  Y  T  G  V  I  Q  T  L  I  K  E  M  S  S  V  A  K  G  *  *  A  Q  K  M  D  H  E  F  I  L  T  S  S  C  T  D  L  F  S  W  K  M  R  L  D  *  F  Y  N  H  L  L  G  K  K  M  L  N  *  N  M  K  T  R  G  A  N  S  Q  L  K  I  R  Q  L  Y  *  T  I  H  H  V  L  E  I  I  A  N  C  Q  E  Y  M  H  T  H  G  N  I  F  Y  V  I  L  K  L  A  Q  K  S  N  T  R  K  D  T  D  </second_frame>
            <third_frame>   *  K  L  P  H  E  N  E  L  Q  T  S  Y  *  I  K  L  K  R  P  L  A  K  F  Y  I  P  P  Q  Q  R  *  L  H  H  E  H  I  K  N  T  D  L  E  G  D  I  L  E  *  Y  K  H  *  *  K  R  *  V  V  W  Q  R  D  N  E  L  K  R  W  I  T  S  S  Y  L  L  R  V  V  L  I  Y  F  L  G  R  *  G  L  I  D  S  T  T  T  C  *  E  K  K  C  *  I  K  T  *  K  H  V  V  P  I  L  N  L  K  *  D  N  S  I  R  L  F  I  M  Y  *  K  *  *  Q  I  A  K  N  T  C  T  L  M  G  T  F  S  M  L  S  *  N  W  L  R  S  P  T  Q  E  K  T  Q  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="119855" PGL_stop="119446"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119855" e_stop="119446"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="119855" e_stop="119446" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119855" stop="119446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M118-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTGGTAATACTCTGTGGCAATAATGAAGCTGCTTGCCATCTCTTTAATTAGTTGAGTTTTTGATATAAGATTATTGTCTGGTCCTTCAATGTGTGTCTCACTATGCTGCCTACAACTTAATGACTGCTAACTTTTTTTGTTAGGGTTTAGGGTTAGAAGTTTCTTTCTGGATTACCATTTCCTTATTGAGTAAATGCAGTTGATGTTTGTTCGCAGGACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTGGTTCTTTCTCTTCATTTCCTTTATCTGTTTGTCTACCCTATGTATCTGGAAAACATACTTGTGCACACTCTCACTGAGCC</gDNA_template>
            <first_frame> S  G  I  H  I  W  D  L  R  M  L  K  F  P  V  L  D  L  P  G  H  T  H  W  *  Y  S  V  A  I  M  K  L  L  A  I  S  L  I  S  *  V  F  D  I  R  L  L  S  G  P  S  M  C  V  S  L  C  C  L  Q  L  N  D  C  *  L  F  L  L  G  F  R  V  R  S  F  F  L  D  Y  H  F  L  I  E  *  M  Q  L  M  F  V  R  R  T  W  T  V  K  C  N  P  E  H  E  D  L  I  L  V  L  S  L  H  F  L  Y  L  F  V  Y  P  M  Y  L  E  N  I  L  V  H  T  L  T  E   </first_frame>
            <second_frame>  L  G  Y  I  Y  G  I  L  E  C  *  S  F  Q  S  L  I  S  L  D  I  L  T  G  N  T  L  W  Q  *  *  S  C  L  P  S  L  *  L  V  E  F  L  I  *  D  Y  C  L  V  L  Q  C  V  S  H  Y  A  A  Y  N  L  M  T  A  N  F  F  C  *  G  L  G  L  E  V  S  F  W  I  T  I  S  L  L  S  K  C  S  *  C  L  F  A  G  H  G  L  S  S  A  I  P  N  M  K  T  *  F  W  F  F  L  F  I  S  F  I  C  L  S  T  L  C  I  W  K  T  Y  L  C  T  L  S  L  S  </second_frame>
            <third_frame>   W  D  T  Y  M  G  S  *  N  A  E  V  S  S  P  *  S  P  W  T  Y  S  L  V  I  L  C  G  N  N  E  A  A  C  H  L  F  N  *  L  S  F  *  Y  K  I  I  V  W  S  F  N  V  C  L  T  M  L  P  T  T  *  *  L  L  T  F  F  V  R  V  *  G  *  K  F  L  S  G  L  P  F  P  Y  *  V  N  A  V  D  V  C  S  Q  D  M  D  C  Q  V  Q  S  R  T  *  R  L  N  S  G  S  F  S  S  F  P  L  S  V  C  L  P  Y  V  S  G  K  H  T  C  A  H  S  H  *  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="125710" PGL_stop="129570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125710" e_stop="125986"/>
            <exon e_start="126126" e_stop="126215"/>
            <exon e_start="126457" e_stop="126537"/>
            <exon e_start="126662" e_stop="126793"/>
            <exon e_start="127926" e_stop="128144"/>
            <exon e_start="128456" e_stop="128548"/>
            <exon e_start="129068" e_stop="129570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125710" e_stop="125986" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.737">
            <gDNA_intron_boundary i_start="125987" i_stop="126125" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="126126" e_stop="126215" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.980">
            <gDNA_intron_boundary i_start="126216" i_stop="126456" i_length="241"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="126457" e_stop="126537" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.931">
            <gDNA_intron_boundary i_start="126538" i_stop="126661" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126662" e_stop="126793" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="126794" i_stop="127925" i_length="1132"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="127926" e_stop="128144" e_length="219"/>
          </exon>
          <intron i_serial="5" don_prob="0.849" acc_prob="0.991">
            <gDNA_intron_boundary i_start="128145" i_stop="128455" i_length="311"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="128456" e_stop="128548" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.990">
            <gDNA_intron_boundary i_start="128549" i_stop="129067" i_length="519"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="129068" e_stop="129570" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125710" stop="125986"/>
              <exon start="126126" stop="126215"/>
              <exon start="126457" stop="126537"/>
              <exon start="126662" stop="126793"/>
              <exon start="127926" stop="128144"/>
              <exon start="128456" stop="128548"/>
              <exon start="129068" stop="129570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6935" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAATAGGGTTTTAGCGAGGAAGAGAAACAAAATTCACGTAAAACAATCCAAAAGAAACACAATTGATAATGTCCTCGCTGACGTTGAAACCAACGTTTCTGTTACAGGCATATGGTTCTTCGTCTTCGTCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAACGAAAACGATACCAAACCTCCAAATGGCTCTATG : CACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACAG : GTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTTTTCGCCATTACTGTAACCACG : GTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAG : GATTCACCAGATTATGCATCTGGTACCCAGAAAAAGGTGACTGGAGAAGTCATAAGGTGGAATAATGTTACAGGTCCTGAAAAAATAGACGCGTTGAAGTATATCGAGTTACTTGAAGCAGAAGTGGAGGAATTGAATCGTCAAATGGAAAGGAAATCTGGTAATGGTTATAATGAGCTGTTGGAATATCTAAAGACTCTTGAGCCTCAAAATATCAAG : GAGCTAACCAGTACAGCTGGAGAAGATGTTGTGCTCGCCATGAATTCTTTCATTAAGCGTCTCTTAGCTGTTTCAGATCCTAGTCAAATGAAG : ACTAGTGTAACAGAGACAAGTGCCCCAGAACTTGCCAAACTTCTTTATTGGCTCATGGTGGTTGGTTATAGCATCCGGAATATTGAAGTCCGCTTTGATATGGAACGGGTACTAGGCACTTCTCCAAAGCTCGCTGAGCTGCCTCCTGGTGAAAATATTTAGGCATCTCTGGAAAGTGTCTAATCTATAGCAAGCATTAAAACGTTGAAGCAACATACATTTTTCATGAGCTTTACGATGGTCAATAGTAAAATTTTATCAAGCTTGTACGACTATCTGGGAGGACAACAGTGGAAATTGGTTTTAGTGCATTTTCTTCACTCACTCCCAGCCCCGCTCCCCCTATTATTCTCAGTTTGGGAGCATCATTAAGACGCTCATACAAAGGAAATGTACTATAAATTGATGCACAATGTAACTTATGTGAGTTAATTTGATTCATTGCCCTCTAAAATGTACCTCTCTGTTTATGGGAATGAGAAATTTTGTGGCTTAGATCTCCA</gDNA_template>
            <first_frame> D  N  R  V  L  A  R  K  R  N  K  I  H  V  K  Q  S  K  R  N  T  I  D  N  V  L  A  D  V  E  T  N  V  S  V  T  G  I  W  F  F  V  F  V  V  C  R  K  S  T  A  L  F  S  D  *  L  P  E  E  N  I  S  Q  T  K  I  H  S  E  S  S  I  P  R  F  T  A  K  *  Q  R  K  R  Y  Q  T  S  K  W  L  Y   : A  Q  K  Q  K  G  N  S  T  G  V  C  A  K  C  T  T  G  I  H  G  V  V  C  E  K  S  T  T  T   : G  S  *  G  N  A  P  N  S  D  K  H  D  W  N  I  T  S  T  I  F  R  H  Y  C  N  H   : G  R  *  K  S  C  S  A  Y  V  *  C  L  D  D  W  I  Y  V  *  E  C  S  I  S  V  R  T  A  T  K  S  G  T  G  C  P  S  *  S  T  G  R  K   : G  F  T  R  L  C  I  W  Y  P  E  K  G  D  W  R  S  H  K  V  E  *  C  Y  R  S  *  K  N  R  R  V  E  V  Y  R  V  T  *  S  R  S  G  G  I  E  S  S  N  G  K  E  I  W  *  W  L  *  *  A  V  G  I  S  K  D  S  *  A  S  K  Y  Q   : G  A  N  Q  Y  S  W  R  R  C  C  A  R  H  E  F  F  H  *  A  S  L  S  C  F  R  S  *  S  N  E   : D  *  C  N  R  D  K  C  P  R  T  C  Q  T  S  L  L  A  H  G  G  W  L  *  H  P  E  Y  *  S  P  L  *  Y  G  T  G  T  R  H  F  S  K  A  R  *  A  A  S  W  *  K  Y  L  G  I  S  G  K  C  L  I  Y  S  K  H  *  N  V  E  A  T  Y  I  F  H  E  L  Y  D  G  Q  *  *  N  F  I  K  L  V  R  L  S  G  R  T  T  V  E  I  G  F  S  A  F  S  S  L  T  P  S  P  A  P  P  I  I  L  S  L  G  A  S  L  R  R  S  Y  K  G  N  V  L  *  I  D  A  Q  C  N  L  C  E  L  I  *  F  I  A  L  *  N  V  P  L  C  L  W  E  *  E  I  L  W  L  R  S  P </first_frame>
            <second_frame>  I  I  G  F  *  R  G  R  E  T  K  F  T  *  N  N  P  K  E  T  Q  L  I  M  S  S  L  T  L  K  P  T  F  L  L  Q  A  Y  G  S  S  S  S  S  S  A  G  S  R  R  L  C  S  L  I  S  F  Q  K  K  T  F  R  K  Q  K  F  T  L  R  A  Q  S  L  D  S  P  Q  N  N  N  E  N  D  T  K  P  P  N  G  S  M  :  H  K  S  R  R  E  I  L  L  E  Y  V  Q  N  V  Q  P  E  F  M  E  L  F  V  K  K  A  P  Q  Q  :  V  V  E  A  M  R  Q  T  V  T  N  M  I  G  T  L  P  P  Q  F  F  A  I  T  V  T  T  :  V  A  E  N  L  A  Q  L  M  Y  S  V  L  M  T  G  Y  M  F  R  N  A  Q  F  R  L  E  L  Q  Q  S  L  E  Q  A  A  L  P  E  A  Q  E  E  K  :  D  S  P  D  Y  A  S  G  T  Q  K  K  V  T  G  E  V  I  R  W  N  N  V  T  G  P  E  K  I  D  A  L  K  Y  I  E  L  L  E  A  E  V  E  E  L  N  R  Q  M  E  R  K  S  G  N  G  Y  N  E  L  L  E  Y  L  K  T  L  E  P  Q  N  I  K  :  E  L  T  S  T  A  G  E  D  V  V  L  A  M  N  S  F  I  K  R  L  L  A  V  S  D  P  S  Q  M  K  :  T  S  V  T  E  T  S  A  P  E  L  A  K  L  L  Y  W  L  M  V  V  G  Y  S  I  R  N  I  E  V  R  F  D  M  E  R  V  L  G  T  S  P  K  L  A  E  L  P  P  G  E  N  I  *  A  S  L  E  S  V  *  S  I  A  S  I  K  T  L  K  Q  H  T  F  F  M  S  F  T  M  V  N  S  K  I  L  S  S  L  Y  D  Y  L  G  G  Q  Q  W  K  L  V  L  V  H  F  L  H  S  L  P  A  P  L  P  L  L  F  S  V  W  E  H  H  *  D  A  H  T  K  E  M  Y  Y  K  L  M  H  N  V  T  Y  V  S  *  F  D  S  L  P  S  K  M  Y  L  S  V  Y  G  N  E  K  F  C  G  L  D  L   </second_frame>
            <third_frame>   *  *  G  F  S  E  E  E  K  Q  N  S  R  K  T  I  Q  K  K  H  N  *  *  C  P  R  *  R  *  N  Q  R  F  C  Y  R  H  M  V  L  R  L  R  R  L  P  E  V  D  G  F  V  L  *  L  A  S  R  R  K  H  F  A  N  K  N  S  L  *  E  L  N  P  S  I  H  R  K  I  T  T  K  T  I  P  N  L  Q  M  A  L  C :   T  K  A  E  G  K  F  Y  W  S  M  C  K  M  Y  N  R  N  S  W  S  C  L  *  K  K  H  H  N  R :   *  L  R  Q  C  A  K  Q  *  Q  T  *  L  E  H  Y  L  H  N  F  S  P  L  L  *  P  R :   S  L  K  I  L  L  S  L  C  I  V  S  *  *  L  D  I  C  L  G  M  L  N  F  G  *  N  C  N  K  V  W  N  R  L  P  F  L  K  H  R  K  K  R :   I  H  Q  I  M  H  L  V  P  R  K  R  *  L  E  K  S  *  G  G  I  M  L  Q  V  L  K  K  *  T  R  *  S  I  S  S  Y  L  K  Q  K  W  R  N  *  I  V  K  W  K  G  N  L  V  M  V  I  M  S  C  W  N  I  *  R  L  L  S  L  K  I  S  R :   S  *  P  V  Q  L  E  K  M  L  C  S  P  *  I  L  S  L  S  V  S  *  L  F  Q  I  L  V  K  *  R :   L  V  *  Q  R  Q  V  P  Q  N  L  P  N  F  F  I  G  S  W  W  L  V  I  A  S  G  I  L  K  S  A  L  I  W  N  G  Y  *  A  L  L  Q  S  S  L  S  C  L  L  V  K  I  F  R  H  L  W  K  V  S  N  L  *  Q  A  L  K  R  *  S  N  I  H  F  S  *  A  L  R  W  S  I  V  K  F  Y  Q  A  C  T  T  I  W  E  D  N  S  G  N  W  F  *  C  I  F  F  T  H  S  Q  P  R  S  P  Y  Y  S  Q  F  G  S  I  I  K  T  L  I  Q  R  K  C  T  I  N  *  C  T  M  *  L  M  *  V  N  L  I  H  C  P  L  K  C  T  S  L  F  M  G  M  R  N  F  V  A  *  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125753" stop="125986"/>
                    <exon start="126126" stop="126215"/>
                    <exon start="126457" stop="126537"/>
                    <exon start="126662" stop="126793"/>
                    <exon start="127926" stop="128144"/>
                    <exon start="128456" stop="128548"/>
                    <exon start="129068" stop="129229"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNPKETQLIMSSLTLKPTFLLQAYGSSSSSSAGSRRLCSLISFQKKTFRKQKFTLRAQSLDSPQNNNENDTKPPNGSMHKSRREILLEYVQNVQPEFMELFVKKAPQQVVEAMRQTVTNMIGTLPPQFFAITVTTVAENLAQLMYSVLMTGYMFRNAQFRLELQQSLEQAALPEAQEEKDSPDYASGTQKKVTGEVIRWNNVTGPEKIDALKYIELLEAEVEELNRQMERKSGNGYNELLEYLKTLEPQNIKELTSTAGEDVVLAMNSFIKRLLAVSDPSQMKTSVTETSAPELAKLLYWLMVVGYSIRNIEVRFDMERVLGTSPKLAELPPGENI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 45 chains have been computed
$ 
$ memory statistics:
$ 20696 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 2299 bytes was the average size of a spliced alignment
$ 14720 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1840 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 45 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:54:31
-->
