<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:48:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6713" ref_strand="+" ref_description="SGN-M6713 C2_At1g26640 [cosii_markers]">
      <seq>tttcagctaccttttagagtgaattgaacaaagcagcagagcattcaccaaaaatggagcacaagaaaacagctaagcgtctccgttgtatcgtcaaactcggaggtgcagccatcacgtgtaaaaataaattggagactatagatgacgagaatcttaaggaagtttcatcccagattcgtcaagcatttgttccggattctacttctgcaaatgttcttggaatggattggagtaaaaggctgggacagtctgaagctccaagtttcgttaatgatttcggtgatcaaccatttgtggattcagaaagttttattgttgttcatggagcaggttcctttggacactttcaagctagcaagtcaggggttcataagggtggactaagccgacctcttgtcaaggccggttttgttgccacaagaatttcagtcacatccctcaatcttgaaatcgtgagagccctagcaagagagggtattccttccatcggaatgtctccattctcatgtggttggtcaacatgtcaaagaaatatgacggaggctgacatttccatggtcattaaagctattgatgctggttttatacctgtcctgcatggagatgcagttctggatacattacaggagtgcactattctgagcggagacgtgantatacgccatttagcagctgaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="6070" stop="1495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5770" g_stop="5669" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5668" i_stop="4828" i_length="841">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4827" g_stop="4597" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="333" r_length="231" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4596" i_stop="4424" i_length="173">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4423" g_stop="4326" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="431" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4325" i_stop="3919" i_length="407">
            <donor d_prob="0.401" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3918" g_stop="3876" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="474" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3875" i_stop="3299" i_length="577">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3298" g_stop="3237" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="536" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3236" i_stop="3119" i_length="118">
            <donor d_prob="0.495" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3118" g_stop="3062" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="593" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3061" i_stop="1959" i_length="1103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1958" g_stop="1923" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="629" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="1922" i_stop="1849" i_length="74">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="1848" g_stop="1795" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="683" r_length="54" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-M6713" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5770" e_stop="5669"/>
          <exon e_start="4827" e_stop="4597"/>
          <exon e_start="4423" e_stop="4326"/>
          <exon e_start="3918" e_stop="3876"/>
          <exon e_start="3298" e_stop="3237"/>
          <exon e_start="3118" e_stop="3062"/>
          <exon e_start="1958" e_stop="1923"/>
          <exon e_start="1848" e_stop="1795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCCAACTTTTAGAGTGAATTGACCAAAGCAGCAGAGCATTCACCAAAAATGGAGCACAAGAAAACAACTAAGCGTCTCCGTTGTATCGTTAAACTCGGTGAACTATCCTTTTCCACTTTATTTGTCTACATTTGATTTGATTTGATTTGATATCTGTGTATTTGATTGACTCAAATAATCCTCAAATTGAGCATCTGTTTGGTACTTTATGAATAGAAAATGTTGTGCTACGATTCAATTGGCACTAATTTTGTGAATTGAACAGGGTTATAGTCAAACTAGATGAATCCATTGACTTGAACAGAGGATATGTGTAGATGAGCTCAACTAGTTTAGGATCGATGCGTAGTTGATTGATTGATTGATTTTACATACAATAACAACATGTCTAGTGTAGTCTTAGCGGGGTCTGAGGAGGGTAGAGTATGCGCAGACCTTACTTTAACTGAGATAAGATAGACGGTTTCTGATAGAACCTTGGCTAATGGAAGTACAAATGATACTAGAAAATAACAAAAACAATAGATTGTAGCGGAAATGCTAATTGATTGATTTTACCTACAACAACAATATATCGAGAGGGGTAGAGTATGTGCAGACCTTACTTCTACCTCATTGAGGTAGAGAGGTTGTTTCTAATAGACCATCGGCTCAAAGACATAATCAGTTTAGAAAAAGACGTAATGGAAGTACAAGGGACAATAGAAAATACTTAAACAAAAACAAAATATAGTAGCATAACATGTTAGTTGATTAATTGATTGACTTTACCTATAGGAGAAACTAGAAATAAAAACAATGTTGGTTAATGCTTTCTTTTGAGTTTGTATTTAACTATTTTAGGTTACTCTTAACACTGTATAAAGTGCATGTCTCTTCTTCTTTTTTATTTTACTTTGGAGATTTTGGATGCATTATTTGTTTACTTTTTAGTTCAGGAGGTGCAGCCATCACGTGTAAAAATAAATTGGAGACTATAGATGAGGAGAATCTTAAGGAAGTTTCGTCCCAGATTCGTCAAGCATTTGTTCCGGACTCTACTTCTGCAAATGTTCTTGGAATGGATTGGAGTAAAAGGCTGGGACAGTCTGAAGCTCCAAGTTTCGTTAATGATTTCAGTGATCAACCAGTTGTGGATTCAGAAAGTTTTATTGTTGTTCATGGAGCAGGTTGATACTATTTGAGTGTGTTTAGTCAGTAGCAGGATTTGTTAGGTTCAGTAGCCACAGCAAATTTCTTTGAATTATGAAATGAATAAACATAAGTCGACCCAATTTTGGTGCTATAGAAGGACAATTTGGATTTTAGTTTTGAGTAAAACATTTGTCATCATTGACTTCAGGTTCCTTTGGACACTTTCAAGCTAGCAAGTCAGGGGTTCATAAGGGTGGACTAAGCCGGCCTCTTGTCAAGGCAGGTTTTGTTGCCACAAGAATTTCAGTAAGCGCCAGACCTCACCTTTCCGTTTTCCACTTGTAACTTAGGACTAGCAGTGCTGTTGCTGAAACCAGTTAAATAGTTACCTCCACCCGTTTCTTTTTCATTCCTACGTTTCATGGCCTTATCATTTCGGGCTCAAATATTACATGAAATAATTCATGCATGCATCTTTGTTCTCCTCTTGTTTTGGACACATCTCCAGGATATTATGCAGGCTAAAATTCCATGCTCCTGAGAGATGTGTATTAGACTGTTCAGGGAATGACGGGTTTGGTGTTTACTGCACAAAATTAAGTGTTATGACCTAATTATTTGCTAGACTTCTTCGTCTATGCGATGATCCCCCTCTATGTTTCCTTCGACTCTCAGGTGCTATGTGACGGAATTTACATTTTTCTTTATTGCAGGTCACATCCCTCAATCTTGAAATCGTGAGAGCCCTAGCAAGAGGTACTTATAACAATTTCATTTCCATGCAACGAGCCTTTTAAGGCTGTCTATAAATATATCTTATTATGATTAAATATACCTGGTACCATAATACACAACATTTTCACATCTTCGTTCCATTGGGTCTCACTGTGGGCAGGGTTGGGAATTGATATGGATTTGGATTTTAAGTCCTGAGCATCTCTCTAATAGCCCAACTGCTTTATTGCATGACAAGAAATAGGATTTGAATAGACATTGTGAAGGCCATAGACAATTATTATATCAGATTGGAGGGGCTATATTGCTCTGCGGAAGATGTTACGAGGGCCTAAATCGTTTTGGTATCCTCTTTTAAGTTCCCACGTCACTCTTTAAGAAGCTAACATCCTCATTAATCAACACAAATTGTTGATATCCATAGTACTTGATGGCTGTCCATCCAGTCATTCTGCAAACAATTGACAGCTCTTCACGTACAAGGCTTGTTAATGATTCATTATAGACGCATATTTTCACCTTAAGGGGCGTACTTGCGTACAAATCTATGTCTCTCTCTTATCAGTGGATTCCTAAGAAATGGTTTTTGTTGTTGCAGAGGGTATTCCTTCCATCGGAATGTCTCCATTCTCATGTGGTTGGTCAACATGTCAAAGAAATGTTAGAAGCCGAAATGAAGATCATTTTCATTAAATGGATATATTTCTATATTTTAAGCTCTTTCGAGAGAAAACAAAATTGTTCCTTGCTTGAAATTTGGCAACTTGTGCTTCTGCAGATGACGGAGGCTGACATTTCCATGGTCATTAAAGCTATTGATGCTGGTTTTATACCTGTAAGTTTGAACTCTTCGGATCTTAGCCCAAAACTCTCGTACTTTTTCACACATATAAATATCTCTGTGGCAACACAATTATATATCAGTTTAGTTTTTCATTGACACTCTCTTTCAGACCATATTCTTACCTTTCCCCTGATATCTTCCTCCATTTTCTGAGGCAAGAATATAATCAATAATGTGCATTATGTAGGTAGGTTTGTCATGATGTTTAGGCTTTTCATGTCAAGGAGGTGCTAACTGTTAGCACTATAGGATGTGTATTTATAAGCTTAATGTTCAAATATTTAGAGGAATATTATAGTAGTGCAAATTCCCATGATTATATGCTTTTTGACATAGACACCAAAGGGTCAAAAATCCAATAGAAGAACTTGGCGAACAGGAAAAAGTTCTGCTACTCAAAGCACTTTCTAGTTTATTATTTTCAAAGATACTTTGGGAGAGTGTTGTTGGTAAACATGTTAATAACTATATGTGTGTAAGTTTAACTTGGCTTTAAACCAAAGACCACACTTAACAATCAGATACTTTTGTAAGCAAGGCATAACCTGAGTAGGTCTTAGCTATGTTCCTTGGACTGCCCAAAAATGTTGCCATACTCCTGTCAGATCTTCCAAACTGCACTACTTTTGGAGCATTGCGCGATATTTTTGAAGAGTCCGAGCAACATAGGGTCTTAATTCGTACAATTGCAAACTAGGGATTATTATATGAAAGGAACTGCTAGTTAAGTTTATCTATGCAATCTGAGATTTTTTCACTTGAATTAATGTCATGTTCATTATAAACAATGTTAATCTGTATGAAATAATTAAGCTTTGTTTGCAAATAAGAAAAGATGATCTTCTGCTAATGTAGCTTTAGCTTAGTTTTCCACTCTTCCTTGATCGAACACTTCTGAATCTTTTTCTTCATTGCAACGAAACACTTCTGGTAAATTGTTCTTTCATAAAGCTTTTCTTCACTATATTTTCATATATCAAGTCCTTGAAATAAAATATCGCTTTCTAATTCGGTCAATTTGTTATTGCAATTGCTTGGATTTTATAGTTTTGTGACATAGAGAATGTTGTAACACAAGTTCGTTTGCATTCCAGGTCCTGCATGGAGATGCAGTTCTGGATACATTACAGGTGTGTTTTTCAAGTATAATTGAACATTAACATGGTGATCACTGTTCATGTAATTAATCCTTTCACTTGTTCAGGAGTGCACTATTCTGAGTGGAGACGTGATAATACGTCATTTAGCAGCTGAACTA</genome_strand>
        <mrna_strand>TTTCAGCTACCTTTTAGAGTGAATTGAACAAAGCAGCAGAGCATTCACCAAAAATGGAGCACAAGAAAACAGCTAAGCGTCTCCGTTGTATCGTCAAACTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTGCAGCCATCACGTGTAAAAATAAATTGGAGACTATAGATGACGAGAATCTTAAGGAAGTTTCATCCCAGATTCGTCAAGCATTTGTTCCGGATTCTACTTCTGCAAATGTTCTTGGAATGGATTGGAGTAAAAGGCTGGGACAGTCTGAAGCTCCAAGTTTCGTTAATGATTTCGGTGATCAACCATTTGTGGATTCAGAAAGTTTTATTGTTGTTCATGGAGCAG.............................................................................................................................................................................GTTCCTTTGGACACTTTCAAGCTAGCAAGTCAGGGGTTCATAAGGGTGGACTAAGCCGACCTCTTGTCAAGGCCGGTTTTGTTGCCACAAGAATTTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCACATCCCTCAATCTTGAAATCGTGAGAGCCCTAGCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATTCCTTCCATCGGAATGTCTCCATTCTCATGTGGTTGGTCAACATGTCAAAGAAAT......................................................................................................................ATGACGGAGGCTGACATTTCCATGGTCATTAAAGCTATTGATGCTGGTTTTATACCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGCATGGAGATGCAGTTCTGGATACATTACAG..........................................................................GAGTGCACTATTCTGAGCGGAGACGTGANTATACGCCATTTAGCAGCTGAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7468-2" ref_strand="+" ref_description="SGN-M7468-2 C2_At2g39970-2 [cosii_markers]">
      <seq>actgtttcataaacaaccatttttgttgaaaaggaaaactccattatcggtgttgaaggattgttgtccgtctatactgggcatgccaactattgggatggcatctcggtttgttagttgctgtgcagtatgatcactgtggcaggatctgtgttctgcaatagaagtttgtgtttctggcagaaccattgtctttacgctgagcagtaaagactgaaaaatgtcaagtgccttggctaatgggctggctggagctggtgggggcataattgcacaaataattacttaccccctccaaactgtcaatacacggcagcagactgagagggtctcgagagagggccgtgattctcgtggcagtgccctgtttcaaatcttacaggtggttagaagtgaaggcttgccagggctttacagtggcctgaagccttctctgctcggaactgccgtgtcacagggtgtctactactatttttaccaggttttcaagaacagggctgaggctatagcagctgcaaataagaaaagaggccgaggggatggttctgttgggatgctttcttggctcgttgtggcagctcttgcaggttcagtaaatgtattgttgacaaaccctatatgggttctagttactcgtatgcagactcatacacaagcagaaaggaaaatcgtggaggcaaaaagggaaaccctattaaaagaagcttctcaaagtgtcttgacagcttcttccttggaagtacagctcgctgaacttgattcgttgaaacctcatccttacgggacattgcaagcagcacgagaggtttataatgaatcaggagtcacaggattctggaaaggagtcatcccagcattgatcatggtgtctaatccctcgattcagttcatgattattgagagtttgtcgaagcagttaagggctaaacgtgctgcgaagaataaagaccagcagaatataactgctttggaagtttttattatcggagcctttgctaaacttggagcaactgtatgcacatatccattgttggttgtgaagtcaaggcttcaagcaaagcaggagattagtggaaatgtctcattacgatattcaggtacagtcgatgctattattaagatgattcatcacgaaggattcagatgcttctatcaaggaatgcgcacaaaaatagtgcagagtgtctttgcagcctctgtacttttcatggtgaaggaagagctcgtcaaagtctacgctgttttagctaacaaaagtaaggttaatgtatagcttgcagtcataaagtgaactacttaataaatcttcttgctggataattgcatatgatttgtactgtatttgtattcaaattacagagtaataattgtaatattccctaaagaaagccatagtaagcttgaaagtgaaagtagctcagatgaatgaactattattgagatactgcccttttgggttatattttgataatagtgcatctggtgacttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="77765" stop="74386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77465" g_stop="77386" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77385" i_stop="77136" i_length="250">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77135" g_stop="77053" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="163" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77052" i_stop="76022" i_length="1031">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76021" g_stop="74682" g_length="1340"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="1497" r_length="1334" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-M7468-2" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1503</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7468-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77465" e_stop="77386"/>
          <exon e_start="77135" e_stop="77053"/>
          <exon e_start="76021" e_stop="74682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGGGTAAGATATCTCTGCCCAAAATTCAAGTGATGAGTATATTGTTGGATGTATTTTTTTTACCAAATTCTGGTATACCAATAATTGAGATAACATCTAGGTTTAATGATCTTTTGAGTAGCTAATTTGTATAGTTATTTCATGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCAGTGTTGGCATGCATAAATTGGGTAAATTTATGATTGAATGTGTATTTTGGTGTTGTACCAAATCCAGGCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATAGTAAGTCAGTCTTTGCTTTTCTTACCGCTTGTTTGAATTGTTGTTGTATAGCCTTTCATAAGGTATAGTATTGTATTCAGTGGCGGATCTAGAATTTTTATAACACGGGTGCACACTACTGAAACAAATTGAGTAGACGGAATGTATTTAGTGGGAATCGATGCTTGTTTCTTTGGGCAAATTAATATTAGATCAATTCTAGAAAGTACAACAATAGCATATCACTTGAGATCGATCCTACCAAGTAGGGTCCGAGGAAGGTAGAGTCTACACAGGCCTTACACTACCTCGTTGAATTGGAGGTAAACTCGTAGAGGTTGAGGTAGAGGGACTGTTTCTGAAGGACTTCGGCTCAAGTACATTAAAACTATGTACACAAATACCTAAGTTGGCCTAAACTAGACTATAAATATGTCCATACATTCGCCCTTAATTGTATTGTGTTGTTGATGAATACAACCTTCCAATGGCCCCCAAAACCTAGCTCAAGTGGCAAAAGGTGGAGGATTTGTGACTTAAGTCGCATGTTCAAGCCCTACACCACGCAAGGCGGAGCATGGTATTTAAGTGGAGAAGGGTAGAGGAGCGGACTCATTATACACCGAGTTTAGAAGACTATGATTGGTCCAAAGGGCGGGTCACATACAGATTTCTCGGTTATGAGGAAAAAAGAATACAACCTTCAGATATAGTTGGAGTTGTTGTAAGAAATATTGGTTAAAGATAGTTAAATAATAAACACAAGAAAAGTGAGAAAAATTATAAGTTAAACATGAGATAACACCAAATATTATTGTTACATAAATGGGATTTTTTGTTATTGGATAACACTGGACTTAACGTTTATGATACTATAAAATTTATATAATAATCAAAACAAATATTGCGCTTGAAATAACAATATGATATAACAAGTATGTTAACAATCATCCAAACAAGCGTTTAGTTTGGAATGTATGCATTCTTGAATCCAATAGTGCATTATCAATGTTGTGTAGGACTTGTTACTAACCATTGTTGAGATTATATAGGAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTGAGATAACTGCCCTTTTGGGGTTATATTTTGATAATTAGTGCATCTGTTGACTTATAATTGT</genome_strand>
        <mrna_strand>ACTGTTTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGG..........................................................................................................................................................................................................................................................GCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTG-AAAGTAGCTCAGATGAATG-AACTATTA-TTGAGAT-ACTGCCCTTTT-GGGTTATATTTTGATAA-TAGTGCATCTGGTGACTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M745-2" ref_strand="+" ref_description="SGN-M745-2 SSR72-2 [est_by_read]">
      <seq>ttcacctccaacacttgttccttagtgtttttttttccttctaatcttcttcatatggttcccttctctctttgtccataacttgtctctcaaatagttatcatcctcttctctttttaaactccccacaacacacacacacacattcattcaaacaacatattctatctattgacaccttaattaacacaaattcttgccttcttaacacagtataatgtcaaatcgaagaacacgcggttcgagacaatcatcaggagcttctagaataagtgatgatcaaattgctgatctcgtatcaaagttacaattacttatccctgaaagccggagcactaggagttccgataaggtagtatttttcagtttaagttatatataccgacagtttgaattccttagttatatataagcatgttgaattgtacttgttgtggtacattcacacattttgacaatgttatttggttacattttgtttgttctcttcttttacttgctataaactatatatgttgtgtttgtaaaaatgaattgaattatatttttccttgaagccattcatatttttttgtggccttcattatctttttagggataagtttaatttgaaagtcatattctcatgcccactaggccatattgcaagctccctcatttaatatttttgtgtgcttaagcatgtggtgtaggactctttgtcacttcataacatttcttggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="85721" stop="84397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85421" g_stop="84697" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-M745-2" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M745-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85421" e_stop="84697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCTCCAACACTTGTTCCTTAGTGTTTTTTTTTCCTTCTAATCTTCTTCATATGGTTCCCTTCTCTCTTTGTCCATAACTTGTCTCTCAAATAGTTATCATCCTCTTCTCTTTTTAAACTCCCCACAACACACACACACACATTCATTCAAACAACATATTCTATCTATTGACACCTTAATTAACACAAATTCTTGCCTTCTTAACACAGTATAATGTCAAATCGAAGAACACGCGGTTCGAGACAATCATCAGGAGCTTCTAGAATAAGTGATGATCAAATTGCTGATCTCGTATCAAAGTTACAATTACTTATCCCTGAAAGCCGGAGCACTAGGAGTTCCGATAAGGTAGTATTTTTCAGTTTAAGTTATATATACCGACAGTTTGAATTCCTTAGTTATATATAAGCATGTTGAATTGTACTTGTTGTGGTACATTCACACATTTTGACAATGTTATTTGGTTACATTTTGTTTGTTCTCTTCTTTTACTTGCTATAAACTATATATGTTGTGTTTGTAAAAATGAATTGAATTATATTTTTCCTTGAAGCCATTCATATTTTTTTGTGGCCTTCATTATCTTTTTAGGGATAAGTTTAATTTGAAAGTCATATTCTCATGCCCACTAGGCCATATTGCAAGCTCCCTCATTTAATATTTTGTGTTGCTTAAGCATGTGGTGTAGGACTCTTTGTCACTTCATAACATTTCTTGGCCT</genome_strand>
        <mrna_strand>TTCACCTCCAACACTTGTTCCTTAGTGTTTTTTTTTCCTTCTAATCTTCTTCATATGGTTCCCTTCTCTCTTTGTCCATAACTTGTCTCTCAAATAGTTATCATCCTCTTCTCTTTTTAAACTCCCCACAACACACACACACACATTCATTCAAACAACATATTCTATCTATTGACACCTTAATTAACACAAATTCTTGCCTTCTTAACACAGTATAATGTCAAATCGAAGAACACGCGGTTCGAGACAATCATCAGGAGCTTCTAGAATAAGTGATGATCAAATTGCTGATCTCGTATCAAAGTTACAATTACTTATCCCTGAAAGCCGGAGCACTAGGAGTTCCGATAAGGTAGTATTTTTCAGTTTAAGTTATATATACCGACAGTTTGAATTCCTTAGTTATATATAAGCATGTTGAATTGTACTTGTTGTGGTACATTCACACATTTTGACAATGTTATTTGGTTACATTTTGTTTGTTCTCTTCTTTTACTTGCTATAAACTATATATGTTGTGTTTGTAAAAATGAATTGAATTATATTTTTCCTTGAAGCCATTCATATTTTTTTGTGGCCTTCATTATCTTTTTAGGGATAAGTTTAATTTGAAAGTCATATTCTCATGCCCACTAGGCCATATTGCAAGCTCCCTCATTTAATATTTTTGTGTGCTTAAGCATGTGGTGTAGGACTCTTTGTCACTTCATAACATTTCTTGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M745" ref_strand="+" ref_description="SGN-M745 SSR72 [est_by_read_no_qc_info]">
      <seq>ccttctaatcttcttcatatggttcccttctctctttgtccataacttgtctctcaaatagttatcatcctcttctctttttaaactccccacaacacacacacacacattcattcaaacaacatattctatctattgacaccttaattaacacaaattcttgccttcttaacacagtataatgtcaaatcgaagaacacgcggttcgagacaatcatcaggagcttctagaataagtgatgatcaaattgctgatctcgtatcaaagttacaattacttatccctgaaagccggagcactaggagttccgataaggtagtatttttcagtttaagttatatataccgacagtttgaattccttagttatatataagcatgttgaattgtacttgttgtggtacattcacacattttgacaatgttatttggttacattttgtttgttctcttcttttacttgctataaactatatatgttgtgtttgtaaaaatgaattgaattatatttttccttgaagccattcatatttttttgtggccttcattatctttttagggataagtttaatttgaaagtcatattctcatgcccactatgccatattgcaagctccctcatttaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="85685" stop="84458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85385" g_stop="84758" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-M745" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85385" e_stop="84758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTAATCTTCTTCATATGGTTCCCTTCTCTCTTTGTCCATAACTTGTCTCTCAAATAGTTATCATCCTCTTCTCTTTTTAAACTCCCCACAACACACACACACACATTCATTCAAACAACATATTCTATCTATTGACACCTTAATTAACACAAATTCTTGCCTTCTTAACACAGTATAATGTCAAATCGAAGAACACGCGGTTCGAGACAATCATCAGGAGCTTCTAGAATAAGTGATGATCAAATTGCTGATCTCGTATCAAAGTTACAATTACTTATCCCTGAAAGCCGGAGCACTAGGAGTTCCGATAAGGTAGTATTTTTCAGTTTAAGTTATATATACCGACAGTTTGAATTCCTTAGTTATATATAAGCATGTTGAATTGTACTTGTTGTGGTACATTCACACATTTTGACAATGTTATTTGGTTACATTTTGTTTGTTCTCTTCTTTTACTTGCTATAAACTATATATGTTGTGTTTGTAAAAATGAATTGAATTATATTTTTCCTTGAAGCCATTCATATTTTTTTGTGGCCTTCATTATCTTTTTAGGGATAAGTTTAATTTGAAAGTCATATTCTCATGCCCACTAGGCCATATTGCAAGCTCCCTCATTTAATA</genome_strand>
        <mrna_strand>CCTTCTAATCTTCTTCATATGGTTCCCTTCTCTCTTTGTCCATAACTTGTCTCTCAAATAGTTATCATCCTCTTCTCTTTTTAAACTCCCCACAACACACACACACACATTCATTCAAACAACATATTCTATCTATTGACACCTTAATTAACACAAATTCTTGCCTTCTTAACACAGTATAATGTCAAATCGAAGAACACGCGGTTCGAGACAATCATCAGGAGCTTCTAGAATAAGTGATGATCAAATTGCTGATCTCGTATCAAAGTTACAATTACTTATCCCTGAAAGCCGGAGCACTAGGAGTTCCGATAAGGTAGTATTTTTCAGTTTAAGTTATATATACCGACAGTTTGAATTCCTTAGTTATATATAAGCATGTTGAATTGTACTTGTTGTGGTACATTCACACATTTTGACAATGTTATTTGGTTACATTTTGTTTGTTCTCTTCTTTTACTTGCTATAAACTATATATGTTGTGTTTGTAAAAATGAATTGAATTATATTTTTCCTTGAAGCCATTCATATTTTTTTGTGGCCTTCATTATCTTTTTAGGGATAAGTTTAATTTGAAAGTCATATTCTCATGCCCACTATGCCATATTGCAAGCTCCCTCATTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5770" PGL_stop="1795"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5770" e_stop="5669"/>
            <exon e_start="4827" e_stop="4597"/>
            <exon e_start="4423" e_stop="4326"/>
            <exon e_start="3918" e_stop="3876"/>
            <exon e_start="3298" e_stop="3237"/>
            <exon e_start="3118" e_stop="3062"/>
            <exon e_start="1958" e_stop="1923"/>
            <exon e_start="1848" e_stop="1795"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.941"/>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="0.978"/>
          <exon-intron don_prob="0.401" acc_prob="0.996" e_score="0.980"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.495" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="5770" e_stop="5669" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="5668" i_stop="4828" i_length="841"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="4827" e_stop="4597" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="4596" i_stop="4424" i_length="173"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="4423" e_stop="4326" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.401" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4325" i_stop="3919" i_length="407"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3918" e_stop="3876" e_length="43"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="3875" i_stop="3299" i_length="577"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3298" e_stop="3237" e_length="62"/>
          </exon>
          <intron i_serial="5" don_prob="0.495" acc_prob="0.976">
            <gDNA_intron_boundary i_start="3236" i_stop="3119" i_length="118"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3118" e_stop="3062" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.983">
            <gDNA_intron_boundary i_start="3061" i_stop="1959" i_length="1103"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="1958" e_stop="1923" e_length="36"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1922" i_stop="1849" i_length="74"/>
          </intron>
          <exon e_serial="8" e_score="0.926">
            <gDNA_exon_boundary e_start="1848" e_stop="1795" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5770" stop="5669"/>
              <exon start="4827" stop="4597"/>
              <exon start="4423" stop="4326"/>
              <exon start="3918" stop="3876"/>
              <exon start="3298" stop="3237"/>
              <exon start="3118" stop="3062"/>
              <exon start="1958" stop="1923"/>
              <exon start="1848" stop="1795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCATCCAACTTTTAGAGTGAATTGACCAAAGCAGCAGAGCATTCACCAAAAATGGAGCACAAGAAAACAACTAAGCGTCTCCGTTGTATCGTTAAACTCG : GAGGTGCAGCCATCACGTGTAAAAATAAATTGGAGACTATAGATGAGGAGAATCTTAAGGAAGTTTCGTCCCAGATTCGTCAAGCATTTGTTCCGGACTCTACTTCTGCAAATGTTCTTGGAATGGATTGGAGTAAAAGGCTGGGACAGTCTGAAGCTCCAAGTTTCGTTAATGATTTCAGTGATCAACCAGTTGTGGATTCAGAAAGTTTTATTGTTGTTCATGGAGCAG : GTTCCTTTGGACACTTTCAAGCTAGCAAGTCAGGGGTTCATAAGGGTGGACTAAGCCGGCCTCTTGTCAAGGCAGGTTTTGTTGCCACAAGAATTTCA : GTCACATCCCTCAATCTTGAAATCGTGAGAGCCCTAGCAAGAG : AGGGTATTCCTTCCATCGGAATGTCTCCATTCTCATGTGGTTGGTCAACATGTCAAAGAAAT : ATGACGGAGGCTGACATTTCCATGGTCATTAAAGCTATTGATGCTGGTTTTATACCT : GTCCTGCATGGAGATGCAGTTCTGGATACATTACAG : GAGTGCACTATTCTGAGTGGAGACGTGATAATACGTCATTTAGCAGCTGAACTA</gDNA_template>
            <first_frame> F  H  P  T  F  R  V  N  *  P  K  Q  Q  S  I  H  Q  K  W  S  T  R  K  Q  L  S  V  S  V  V  S  L  N  S  :  E  V  Q  P  S  R  V  K  I  N  W  R  L  *  M  R  R  I  L  R  K  F  R  P  R  F  V  K  H  L  F  R  T  L  L  L  Q  M  F  L  E  W  I  G  V  K  G  W  D  S  L  K  L  Q  V  S  L  M  I  S  V  I  N  Q  L  W  I  Q  K  V  L  L  L  F  M  E  Q  :  V  P  L  D  T  F  K  L  A  S  Q  G  F  I  R  V  D  *  A  G  L  L  S  R  Q  V  L  L  P  Q  E  F  Q :   S  H  P  S  I  L  K  S  *  E  P  *  Q  E  :  R  V  F  L  P  S  E  C  L  H  S  H  V  V  G  Q  H  V  K  E  I :   *  R  R  L  T  F  P  W  S  L  K  L  L  M  L  V  L  Y  L :   S  C  M  E  M  Q  F  W  I  H  Y  R :   S  A  L  F  *  V  E  T  *  *  Y  V  I  *  Q  L  N   </first_frame>
            <second_frame>  F  I  Q  L  L  E  *  I  D  Q  S  S  R  A  F  T  K  N  G  A  Q  E  N  N  *  A  S  P  L  Y  R  *  T  R :   R  C  S  H  H  V  *  K  *  I  G  D  Y  R  *  G  E  S  *  G  S  F  V  P  D  S  S  S  I  C  S  G  L  Y  F  C  K  C  S  W  N  G  L  E  *  K  A  G  T  V  *  S  S  K  F  R  *  *  F  Q  *  S  T  S  C  G  F  R  K  F  Y  C  C  S  W  S  R :   F  L  W  T  L  S  S  *  Q  V  R  G  S  *  G  W  T  K  P  A  S  C  Q  G  R  F  C  C  H  K  N  F   : S  H  I  P  Q  S  *  N  R  E  S  P  S  K  R :   G  Y  S  F  H  R  N  V  S  I  L  M  W  L  V  N  M  S  K  K   : Y  D  G  G  *  H  F  H  G  H  *  S  Y  *  C  W  F  Y  T   : C  P  A  W  R  C  S  S  G  Y  I  T   : G  V  H  Y  S  E  W  R  R  D  N  T  S  F  S  S  *  T  </second_frame>
            <third_frame>   S  S  N  F  *  S  E  L  T  K  A  A  E  H  S  P  K  M  E  H  K  K  T  T  K  R  L  R  C  I  V  K  L   : G  G  A  A  I  T  C  K  N  K  L  E  T  I  D  E  E  N  L  K  E  V  S  S  Q  I  R  Q  A  F  V  P  D  S  T  S  A  N  V  L  G  M  D  W  S  K  R  L  G  Q  S  E  A  P  S  F  V  N  D  F  S  D  Q  P  V  V  D  S  E  S  F  I  V  V  H  G  A   : G  S  F  G  H  F  Q  A  S  K  S  G  V  H  K  G  G  L  S  R  P  L  V  K  A  G  F  V  A  T  R  I  S  :  V  T  S  L  N  L  E  I  V  R  A  L  A  R   : E  G  I  P  S  I  G  M  S  P  F  S  C  G  W  S  T  C  Q  R  N  :  M  T  E  A  D  I  S  M  V  I  K  A  I  D  A  G  F  I  P  :  V  L  H  G  D  A  V  L  D  T  L  Q  :  E  C  T  I  L  S  G  D  V  I  I  R  H  L  A  A  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5753" stop="5669"/>
                    <exon start="4827" stop="4597"/>
                    <exon start="4423" stop="4326"/>
                    <exon start="3918" stop="3876"/>
                    <exon start="3298" stop="3237"/>
                    <exon start="3118" stop="3062"/>
                    <exon start="1958" stop="1923"/>
                    <exon start="1848" stop="1795"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SELTKAAEHSPKMEHKKTTKRLRCIVKLGGAAITCKNKLETIDEENLKEVSSQIRQAFVPDSTSANVLGMDWSKRLGQSEAPSFVNDFSDQPVVDSESFIVVHGAGSFGHFQASKSGVHKGGLSRPLVKAGFVATRISVTSLNLEIVRALAREGIPSIGMSPFSCGWSTCQRNMTEADISMVIKAIDAGFIPVLHGDAVLDTLQECTILSGDVIIRHLAAEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="77465" PGL_stop="74682"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77465" e_stop="77386"/>
            <exon e_start="77135" e_stop="77053"/>
            <exon e_start="76021" e_stop="74682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.711" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77465" e_stop="77386" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.979">
            <gDNA_intron_boundary i_start="77385" i_stop="77136" i_length="250"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77135" e_stop="77053" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.902" acc_prob="0.711">
            <gDNA_intron_boundary i_start="77052" i_stop="76022" i_length="1031"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="76021" e_stop="74682" e_length="1340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77465" stop="77386"/>
              <exon start="77135" stop="77053"/>
              <exon start="76021" stop="74682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7468-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGTTTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGG : GCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATA : GAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTGAGATAACTGCCCTTTTGGGGTTATATTTTGATAATTAGTGCATCTGTTGACTTATAATTGT</gDNA_template>
            <first_frame> T  V  S  *  T  T  I  F  V  E  K  E  N  S  I  I  G  V  E  G  L  L  S  V  Y  T  G :   H  A  N  Y  W  D  G  I  S  V  C  *  L  L  C  S  M  I  T  V  A  G  S  V  F  C  N   : R  S  L  C  F  W  Q  N  H  C  L  Y  A  E  Q  *  R  L  K  N  V  K  C  L  G  *  W  A  G  W  S  W  W  G  H  N  C  T  N  N  Y  L  P  P  P  N  C  Q  Y  T  A  A  D  *  E  G  L  E  R  G  P  *  F  S  W  Q  C  P  V  S  N  L  T  G  G  *  K  *  R  L  A  R  A  L  Q  W  P  E  A  F  S  A  R  N  C  R  V  T  G  C  L  L  L  F  L  P  G  F  Q  E  Q  G  *  G  Y  S  S  C  K  *  E  K  R  P  R  G  W  F  C  W  D  A  F  L  A  R  C  G  S  S  C  R  F  S  K  C  I  V  D  K  P  Y  M  G  S  S  Y  S  Y  A  D  S  Y  T  S  R  K  E  N  R  G  G  K  K  G  N  P  I  K  R  S  F  S  K  C  L  D  S  F  F  L  G  S  T  A  R  *  T  *  F  V  E  T  S  S  L  R  D  I  A  S  S  T  R  G  L  *  *  I  R  S  H  R  I  L  E  R  S  H  P  S  I  D  H  G  V  *  S  L  D  S  V  H  D  Y  *  E  F  V  E  A  V  K  G  *  T  C  C  E  E  *  R  P  A  E  Y  N  C  F  G  S  F  Y  Y  R  S  L  C  *  T  W  S  N  C  M  H  I  S  I  V  G  C  E  V  K  A  S  S  K  A  G  D  *  W  K  C  L  I  T  I  F  R  Y  S  R  C  Y  Y  *  D  D  S  S  R  R  I  Q  M  L  L  S  R  N  A  H  K  N  S  A  E  C  L  C  S  L  C  T  F  H  G  E  G  R  A  R  Q  S  L  R  C  F  S  *  Q  K  *  G  *  C  I  A  C  S  H  K  V  N  Y  L  I  N  L  L  A  G  *  L  H  M  I  C  T  V  F  V  F  K  L  Q  S  N  N  C  N  I  P  *  R  K  P  *  *  A  *  K  *  K  V  A  Q  M  N  E  T  I  I  *  D  N  C  P  F  G  V  I  F  *  *  L  V  H  L  L  T  Y  N  C </first_frame>
            <second_frame>  L  F  H  K  Q  P  F  L  L  K  R  K  T  P  L  S  V  L  K  D  C  C  P  S  I  L   : G  M  P  T  I  G  M  A  S  R  F  V  S  C  C  A  V  *  S  L  W  Q  D  L  C  S  A  I  :  E  V  C  V  S  G  R  T  I  V  F  T  L  S  S  K  D  *  K  M  S  S  A  L  A  N  G  L  A  G  A  G  G  G  I  I  A  Q  I  I  T  Y  P  L  Q  T  V  N  T  R  Q  Q  T  E  R  V  S  R  E  G  R  D  S  R  G  S  A  L  F  Q  I  L  Q  V  V  R  S  E  G  L  P  G  L  Y  S  G  L  K  P  S  L  L  G  T  A  V  S  Q  G  V  Y  Y  Y  F  Y  Q  V  F  K  N  R  A  E  A  I  A  A  A  N  K  K  R  G  R  G  D  G  S  V  G  M  L  S  W  L  V  V  A  A  L  A  G  S  V  N  V  L  L  T  N  P  I  W  V  L  V  T  R  M  Q  T  H  T  Q  A  E  R  K  I  V  E  A  K  R  E  T  L  L  K  E  A  S  Q  S  V  L  T  A  S  S  L  E  V  Q  L  A  E  L  D  S  L  K  P  H  P  Y  G  T  L  Q  A  A  R  E  V  Y  N  E  S  G  V  T  G  F  W  K  G  V  I  P  A  L  I  M  V  S  N  P  S  I  Q  F  M  I  I  E  S  L  S  K  Q  L  R  A  K  R  A  A  K  N  K  D  Q  Q  N  I  T  A  L  E  V  F  I  I  G  A  F  A  K  L  G  A  T  V  C  T  Y  P  L  L  V  V  K  S  R  L  Q  A  K  Q  E  I  S  G  N  V  S  L  R  Y  S  G  T  V  D  A  I  I  K  M  I  H  H  E  G  F  R  C  F  Y  Q  G  M  R  T  K  I  V  Q  S  V  F  A  A  S  V  L  F  M  V  K  E  E  L  V  K  V  Y  A  V  L  A  N  K  S  K  V  N  V  *  L  A  V  I  K  *  T  T  *  *  I  F  L  L  D  N  C  I  *  F  V  L  Y  L  Y  S  N  Y  R  V  I  I  V  I  F  P  K  E  S  H  S  K  L  E  S  E  K  *  L  R  *  M  K  L  L  F  E  I  T  A  L  L  G  L  Y  F  D  N  *  C  I  C  *  L  I  I   </second_frame>
            <third_frame>   C  F  I  N  N  H  F  C  *  K  G  K  L  H  Y  R  C  *  R  I  V  V  R  L  Y  W  :  A  C  Q  L  L  G  W  H  L  G  L  L  V  A  V  Q  Y  D  H  C  G  R  I  C  V  L  Q  * :   K  F  V  F  L  A  E  P  L  S  L  R  *  A  V  K  T  E  K  C  Q  V  P  W  L  M  G  W  L  E  L  V  G  A  *  L  H  K  *  L  L  T  P  S  K  L  S  I  H  G  S  R  L  R  G  S  R  E  R  A  V  I  L  V  A  V  P  C  F  K  S  Y  R  W  L  E  V  K  A  C  Q  G  F  T  V  A  *  S  L  L  C  S  E  L  P  C  H  R  V  S  T  T  I  F  T  R  F  S  R  T  G  L  R  L  *  Q  L  Q  I  R  K  E  A  E  G  M  V  L  L  G  C  F  L  G  S  L  W  Q  L  L  Q  V  Q  *  M  Y  C  *  Q  T  L  Y  G  F  *  L  L  V  C  R  L  I  H  K  Q  K  G  K  S  W  R  Q  K  G  K  P  Y  *  K  K  L  L  K  V  S  *  Q  L  L  P  W  K  Y  S  S  L  N  L  I  R  *  N  L  I  L  T  G  H  C  K  Q  H  E  R  F  I  M  N  Q  E  S  Q  D  S  G  K  E  S  S  Q  H  *  S  W  C  L  I  P  R  F  S  S  *  L  L  R  V  C  R  S  S  *  G  L  N  V  L  R  R  I  K  T  S  R  I  *  L  L  W  K  F  L  L  S  E  P  L  L  N  L  E  Q  L  Y  A  H  I  H  C  W  L  *  S  Q  G  F  K  Q  S  R  R  L  V  E  M  S  H  Y  D  I  Q  V  Q  S  M  L  L  L  R  *  F  I  T  K  D  S  D  A  S  I  K  E  C  A  Q  K  *  C  R  V  S  L  Q  P  L  Y  F  S  W  *  R  K  S  S  S  K  S  T  L  F  *  L  T  K  V  R  L  M  Y  S  L  Q  S  *  S  E  L  L  N  K  S  S  C  W  I  I  A  Y  D  L  Y  C  I  C  I  Q  I  T  E  *  *  L  *  Y  S  L  K  K  A  I  V  S  L  K  V  K  S  S  S  D  E  *  N  Y  Y  L  R  *  L  P  F  W  G  Y  I  L  I  I  S  A  S  V  D  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75967" stop="74912"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSSALANGLAGAGGGIIAQIITYPLQTVNTRQQTERVSREGRDSRGSALFQILQVVRSEGLPGLYSGLKPSLLGTAVSQGVYYYFYQVFKNRAEAIAAANKKRGRGDGSVGMLSWLVVAALAGSVNVLLTNPIWVLVTRMQTHTQAERKIVEAKRETLLKEASQSVLTASSLEVQLAELDSLKPHPYGTLQAAREVYNESGVTGFWKGVIPALIMVSNPSIQFMIIESLSKQLRAKRAAKNKDQQNITALEVFIIGAFAKLGATVCTYPLLVVKSRLQAKQEISGNVSLRYSGTVDAIIKMIHHEGFRCFYQGMRTKIVQSVFAASVLFMVKEELVKVYAVLANKSKVNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="85421" PGL_stop="84697"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85421" e_stop="84697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="85421" e_stop="84697" e_length="725"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85421" stop="84697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M745-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85385" stop="84758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCACCTCCAACACTTGTTCCTTAGTGTTTTTTTTTCCTTCTAATCTTCTTCATATGGTTCCCTTCTCTCTTTGTCCATAACTTGTCTCTCAAATAGTTATCATCCTCTTCTCTTTTTAAACTCCCCACAACACACACACACACATTCATTCAAACAACATATTCTATCTATTGACACCTTAATTAACACAAATTCTTGCCTTCTTAACACAGTATAATGTCAAATCGAAGAACACGCGGTTCGAGACAATCATCAGGAGCTTCTAGAATAAGTGATGATCAAATTGCTGATCTCGTATCAAAGTTACAATTACTTATCCCTGAAAGCCGGAGCACTAGGAGTTCCGATAAGGTAGTATTTTTCAGTTTAAGTTATATATACCGACAGTTTGAATTCCTTAGTTATATATAAGCATGTTGAATTGTACTTGTTGTGGTACATTCACACATTTTGACAATGTTATTTGGTTACATTTTGTTTGTTCTCTTCTTTTACTTGCTATAAACTATATATGTTGTGTTTGTAAAAATGAATTGAATTATATTTTTCCTTGAAGCCATTCATATTTTTTTGTGGCCTTCATTATCTTTTTAGGGATAAGTTTAATTTGAAAGTCATATTCTCATGCCCACTAGGCCATATTGCAAGCTCCCTCATTTAATATTTTGTGTTGCTTAAGCATGTGGTGTAGGACTCTTTGTCACTTCATAACATTTCTTGGCCT</gDNA_template>
            <first_frame> F  T  S  N  T  C  S  L  V  F  F  F  P  S  N  L  L  H  M  V  P  F  S  L  C  P  *  L  V  S  Q  I  V  I  I  L  F  S  F  *  T  P  H  N  T  H  T  H  I  H  S  N  N  I  F  Y  L  L  T  P  *  L  T  Q  I  L  A  F  L  T  Q  Y  N  V  K  S  K  N  T  R  F  E  T  I  I  R  S  F  *  N  K  *  *  S  N  C  *  S  R  I  K  V  T  I  T  Y  P  *  K  P  E  H  *  E  F  R  *  G  S  I  F  Q  F  K  L  Y  I  P  T  V  *  I  P  *  L  Y  I  S  M  L  N  C  T  C  C  G  T  F  T  H  F  D  N  V  I  W  L  H  F  V  C  S  L  L  L  L  A  I  N  Y  I  C  C  V  C  K  N  E  L  N  Y  I  F  P  *  S  H  S  Y  F  F  V  A  F  I  I  F  L  G  I  S  L  I  *  K  S  Y  S  H  A  H  *  A  I  L  Q  A  P  S  F  N  I  L  C  C  L  S  M  W  C  R  T  L  C  H  F  I  T  F  L  G   </first_frame>
            <second_frame>  S  P  P  T  L  V  P  *  C  F  F  F  L  L  I  F  F  I  W  F  P  S  L  F  V  H  N  L  S  L  K  *  L  S  S  S  S  L  F  K  L  P  T  T  H  T  H  T  F  I  Q  T  T  Y  S  I  Y  *  H  L  N  *  H  K  F  L  P  S  *  H  S  I  M  S  N  R  R  T  R  G  S  R  Q  S  S  G  A  S  R  I  S  D  D  Q  I  A  D  L  V  S  K  L  Q  L  L  I  P  E  S  R  S  T  R  S  S  D  K  V  V  F  F  S  L  S  Y  I  Y  R  Q  F  E  F  L  S  Y  I  *  A  C  *  I  V  L  V  V  V  H  S  H  I  L  T  M  L  F  G  Y  I  L  F  V  L  F  F  Y  L  L  *  T  I  Y  V  V  F  V  K  M  N  *  I  I  F  F  L  E  A  I  H  I  F  L  W  P  S  L  S  F  *  G  *  V  *  F  E  S  H  I  L  M  P  T  R  P  Y  C  K  L  P  H  L  I  F  C  V  A  *  A  C  G  V  G  L  F  V  T  S  *  H  F  L  A  </second_frame>
            <third_frame>   H  L  Q  H  L  F  L  S  V  F  F  S  F  *  S  S  S  Y  G  S  L  L  S  L  S  I  T  C  L  S  N  S  Y  H  P  L  L  F  L  N  S  P  Q  H  T  H  T  H  S  F  K  Q  H  I  L  S  I  D  T  L  I  N  T  N  S  C  L  L  N  T  V  *  C  Q  I  E  E  H  A  V  R  D  N  H  Q  E  L  L  E  *  V  M  I  K  L  L  I  S  Y  Q  S  Y  N  Y  L  S  L  K  A  G  A  L  G  V  P  I  R  *  Y  F  S  V  *  V  I  Y  T  D  S  L  N  S  L  V  I  Y  K  H  V  E  L  Y  L  L  W  Y  I  H  T  F  *  Q  C  Y  L  V  T  F  C  L  F  S  S  F  T  C  Y  K  L  Y  M  L  C  L  *  K  *  I  E  L  Y  F  S  L  K  P  F  I  F  F  C  G  L  H  Y  L  F  R  D  K  F  N  L  K  V  I  F  S  C  P  L  G  H  I  A  S  S  L  I  *  Y  F  V  L  L  K  H  V  V  *  D  S  L  S  L  H  N  I  S  W  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85213" stop="85010"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSIMSNRRTRGSRQSSGASRISDDQIADLVSKLQLLIPESRSTRSSDKVVFFSLSYIYRQFEFLSYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 54 chains have been computed
$ 
$ memory statistics:
$ 8896 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2224 bytes was the average size of a spliced alignment
$ 8168 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2722 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 55 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:48:20
-->
