<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 14:38:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="-" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="74009" stop="2458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10415" g_stop="10047" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="3104" i_length="6943">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3103" g_stop="2758" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="717" r_length="346" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="-" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10415" e_stop="10047"/>
          <exon e_start="3103" e_stop="2758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTTCGGTGGAGGTAGGTTATAGTTT-TC--ATGCT-TTCATAGTAAACTCTTAATAGAGAATGATATGTATTGATAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAACATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATAAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAGTTGATAGAAAGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCATGAACCGACACGTAGAATTAGGGGATCGAGTGTCACGAACTGACACGTAGATTTAGGGGATCGGGTGTCACAAACCGACACGTAGATTTAGGGGATGGGGTGTCACGAACCAACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACATGTAGATTTAGGAGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGAGACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTAAATGATATAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGGTTATTTTATGATATTACTTGGTATATATTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCGTCTTCAACTCAATAATAATTCTAGCCAGTTTTCGTCACACCAGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTTTATTTGTTTTAGCTTTTTAGAATACTCTTAGTTTAGTACTTTGATCATAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCACGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCATACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGATGGGCTATAAGACTTTAGGAAAATTCCATTCTTTCATTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATTTGACCATCTTCATTCTATTTCGCAGATGGTTAGAATTAGAGCAACGACGACGCCAACATCAACACCAGCACCAGCGGGACAGGGTGCGTCTGAGCCAGCCACTGGGGCTGTAGCTCGAGGAAGAGCAGCGGCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTTGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAATGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGAAAAATGAACAAGTGCAGAATGAGGGATTGCCACTCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTGTCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGATTTCAGAGGTAGAACATGCAGCCACTATGGCTCCTCGTATTGATGCCTCATTAGATATAGGCACGTTTCCACGTCTGACTACTGGGCCTATCATGACAAATGATCAGCATGAAATTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTAGTTGACTGTCATAAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGATGGCGGTCACATATTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTTATTCTCTAGTTTGTTTATGGAGAAGTATATCCCCCAGACTTTGAGGGATAGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTTGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCTAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATAAATTCACCATGGCATCAACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTCTTCACTACAGACTGTGGTTGGGGGTCCACCTCAAACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGGTGTGGAGAGACTGGACATATTAGGAGAAATTGTCCAAAACAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACATGGTGGTCGAGGTAATGGTGGTCACCAAAATGGTCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAATGTACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATAGCTTCTGTATTGTTTGATCCCGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCACAATTTGCGATCTCGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCAGTCCGTATCATCTCTTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACACCTGCGGGATGATACTATTCAAGTACCCTCAATTGAGTCGGTCTCAATAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGAGAGGGATATTGACTTTTGAATTGATCTTGAATCGGGTACTCGCCCCATTTCTATACCCCTTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTTCTTGGGGTGCTCCGATTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACCGGCAATTGAACAAGGTAACTATTAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCAAACGAGGTATGGGCATTACGAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTACCGCGTTCATGAGCTTGATGAACGGGATTTTTAAACCATATTTGGACCTCTTCGTGATCGTATTTATTGATGATATATTGATATACTCAAAGAGCAAGAAAGAACATGAGGAGCATTTGAGAATGATATTGGAAATGTTGAGGGAGAAAAAGTTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGCTTTCTAAGGATGGAGTGATGGTGGATCCTTCTAAGATTGAGACAGTGAAGAATTGGGTAAGACCTACTAATGTGTCAGAAATAAGGAGCTTTGTTGGGTTAGCTAGCTACTACCGCCGATTTGTCAAGGGATTCTCTTCTATTGCGTCCCAAATGACGAACTTGACTAAGCAAAATGTTCCATTTGTATGGTCGGATGAGTGTGAGGAAAGCTTTCAGAAGCTCAAGACTCTGTTGACTACTGCACCAATTCTCACCTTGCCAGTGGAAGATAAGAATTTCATTGTCTATTGTGATGCATCCCATTCGGGTTTGGGTGCAGTGCTAATGCAAGAGAAGAATGTGATTGCTTATGCTTCAAGACAATTAAAAGTGCATGAGCATAACTATCCAACTCATGATTTGGAATTGGCCGCGGTAGTGTTTGCATTAAAACAATGGAGACACTATTTATATGGGGTTAAGTGTGAGGTCTATACGGATCATCGTAGCCTACAGTATGTCTTTACTCAGAAAGATTTGAACTTGAGACAGAGGAGATGGATGGAACTACTGAAGGACTACGACATCACTATTTTGTATCATCCGGGGAAGGCGAATGTTGTAGCGGATGCTTTAAGTAGAAAGGCGGGGAGCATGGGAAGTCTAGCTCACTTGCAAGCTTCTAGACGCCCATTGGCTAGAGAGGTTCAGACTCTAGCTAATGACTTGATGAGATTAGAAGTAAATGAGAAGGGAGGATTGTTGGCTTCTGTGGAGGCAAGATCTTCCTTTCTTGACAAGATTAAGGGAAGACAATCGGATGATGAGAAACTGCGCAGAATCCAAGATAAGGTATTGCGAGGAGAGGCTAAGGAAGCACAAATTGATGAGAAAGGTGTTTTGAGGATTAAGGGAAGGGTATGTGTACCCCGAGTTGATGATTTGATCAACACTATTCTGATAGAGGCTCATAGTTCAAGGTATTCTATACATTCGGGTGCAACCAAGATGTACCGTGACCTAAAGCAACACTTTTGGTGGAGTAGAATGAAGCGTGATATTGTTGACTTTATTGCCAAATGTCCAAACTGTCAACAAGTAAAGTATGAACACCAGAGGCCTGGAGGAACACTTCAGAGAATGCCCATTCCTGAATGGAAGAGGGAGAGAATTGCAATGGATTTTGTAGTTGGCCTTCCAAAGACAATGAGTAAGTATGACTCTATTTGGGTGATTGTTGATAGGTTAACTAAATCTGCTCATTTCATTCCGGTCAAGGTGACTTACAATGCAGAGAAGTTAGCCAAACTTTACATCTCGGAAGTAGTGCGATTGTATGGGGTTCCACTCTCCATTATATCAGATAGAGGTACGCAGTTTACTTCTAAGTTTTGGAAAACACTCCATGCGGAATTGGGTACTAGGTTGGACCTTAGTACCGCGTTCCATCCGCAGACCGATGGTCAGTCTGAGCGAACGATTCAAGTGTTGGAGGATATGCTTCGCGCATGTGTTATAGAGTTTGGTGGCCATTAAGATAGCTTTTTACCCTTAGCGGAATTTTCATACAATAATAGCTATCACTCAAGCATTGATATGGCTCCATTTGAAGCATTGTATAGTAGGAGATGTAGGACCCCCATTGGTTGGTTTGATGCATTCGAGGTTAGACCTTGGGGTACTGATCTTTTGAGGGATTCGATAGAGAAAGTGAAATCTATTCAAGCAAAGCTTCTAGCGGCTCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGAGAACTAGTCTTGCTGAAGGTTTCGCCCATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAGCTAAGTCCAAGGTACATTGGTCCCTTTGAAGTACTTAAGCGAGTAGGGGAGGTGGCTTATGAATTAGCCTTGCCTCCAGGGCTGTCCGGAGTATATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGAATGGAAACTACATTATCCGTTGGGATTCAGTTCTGCTTGACGAGAATTTGTCTTATGAGAAGGAACCTGTTGCCATTCTAGATAGAGAAATTCGAAAGTTGAGATCAAGGGAGATTGCATCCATCAAAGTTCAATGGAAGAATCGACCCGTTGAAGAAGCCACTTGGGAGAAGGAGGCGGATATGCTAGAAAAATACCCACATATGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTTCCTTCTTGTGATCGTTCGGGGACGAATGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAAATTTCAATTCTGGAAAAACTGGCAGAAGCGACGGACCCCACGATGGACCGTCATAGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCATGACGGAATGGCAGGACGGACCGTCACAGACCCTTCAGAGAAATTGAGTCTCTGAACTCTGTGACGGGCAGCAGGACGGACCGTCGCAGGCGCGACGGGCCGTCACAGACTGCGAAATCCCAATCTGGGTCGGATTTCTTTATACGTTTTAAGGGACGTTTTTGACTATTCCTGCCTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGTTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAGAAGAGAGAGAGAGGGTCGATCGAGAAGGGGAAACACAAAGCTTTGGAGAAAATTTGCTTGCTTGATCACTAATCTTTGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGATAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTCTATTAAACATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATAAACTAAAGTAATGAGATTGATGATGTCTTGGTAAGGGAGAAGGCTTGATGAGTTGATAGAAAGAGATTAGGGGATCAGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGAATTAGGGGATCGG-GTGTCACGAACCGACACGTAGA-TTAGGGGATCGGAGTATCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGTGGAGTGTCACATACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTAGGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347579" ref_strand="+" ref_description="SGN-E347579 [cTOF-26-K4]">
      <seq>aataaagaaaatagaaagaacaagagagagaggaagaatcgaacgagaagggagaaacaaagcttggagaaaaatttgcttgcttgatcactaatcttcggtggaggtaggttatggttttcatgctttcatagtaaactcttaatagagaatgatatgtattggtagtattgtaaaccctgctatatgcttaattgtatgcatgcatgaacgtgattatataattgtgattatattaagcatgatgaagttattgaatcccaaatcttgataaaaatctaatctcttattaatgatgatgccttggtatagaagaaggcttgatgaataaaagtaatgggattgatgatgccttggtatagagaaggcctgatgatttacagaatgatattagtggatcggagtgtcacgtaccgacacatgcaggggatcgggtgtcacgaaccgacacgtagaattaggggatcgggtgtcacgaactggcacgtagaattaggggatcgggtgtcacgaaccggcacgtagattaggggatcaggtgtcacgaaccgacacgtagaattaggggatcgggtgtcacgaaccgacacgtagaattaggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="-" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="83045" stop="2585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3496" g_stop="2885" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="-" ref_id="SGN-E347579" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3496" e_stop="2885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGAAAATAGAAAGAACAAGAAGAGAGAGAGAGGGTCGATCGAGAAGGGGAAACACAAAGCTTTGGAGAAAATTTGCTTGCTTGATCACTAATCTTTGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGATAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTCTATTAAACATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATAAACTAAAGTAATGAGATTGATGATGTCTTGGTAAGGGAGAAGGCTTGATGAGTTGATAGAAAGAGATTAGGGGATCAG-GTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAG-ATTAGGGGAT</genome_strand>
        <mrna_strand>AATAAAGAAAATAGAAAGAACAAG-AGAGAGAGGAAGAATCGAACGAGAA-GGGAGAAACAAAGCTTGGAGAAAAATTTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATATGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAATCTAATCTCTTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATAAAAGTAATGGGATTGATGATGCCTTGGT-ATAGAGAAGGCCTGATGA-TTTACAGAATGATATTAGTGGATCGGAGTGTCACGTACCGACACAT-G---CAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGGCACGTAGAATTAGGGGATCGGGTGTCACGAACCGGCACGTAGA-TTAGGGGATCAGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="5829" stop="7141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6129" g_stop="6841" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6129" e_stop="6841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAAGCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATATCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGTTTAAAAATCCCGTTCATCAAGCTCATGAACGCGGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAATTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAATCGGAGCACCCCAAGAAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="5829" stop="7024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6129" g_stop="6724" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6129" e_stop="6724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAAGCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATATCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGTTTAAAAATCCCGTTCATCAAGCTCATGAACGCGGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAATTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="5829" stop="6954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6129" g_stop="6654" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6129" e_stop="6654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAAGCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATATCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGTTTAAAAATCCCGTTCATCAAGCTCATGAACGCGGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="5900" stop="7178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6200" g_stop="6879" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6200" e_stop="6879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAAGCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATATCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGTTTAAAAATCCCGTTCATCAAGCTCATGAACGCGGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAATTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAATCGGAGCACCCCAAGAAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAAGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="5900" stop="6858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6200" g_stop="6558" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6200" e_stop="6558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAAGCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATATCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGTTTAAAAATCCCGTTCATCAAGCTCATGAACGCGGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="6821" stop="7747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7121" g_stop="7451" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7121" e_stop="7451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCGAGATCGCAAATTGTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCGGGATCAAACAATACAGAAGCTATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="7032" stop="8395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7332" g_stop="8095" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7332" e_stop="8095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCGGGATCAAACAATACAGAAGCTATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTACATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCATGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCTCCACACCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTTTGAGGTGGACCCCCAACCACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGCCATGGTGAATTTATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTAGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACAACGAATCCGCTCTTG-TGGACTGAAACAAAGTTGAGTGGCATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="7112" stop="8501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7412" g_stop="8201" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7412" e_stop="8201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGATCAAACAATACAGAAGCTATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTACATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCATGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCTCCACACCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTTTGAGGTGGACCCCCAACCACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGCCATGGTGAATTTATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTAGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACAACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCTGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="7114" stop="8247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7414" g_stop="7947" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7414" e_stop="7947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCTATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTACATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCATGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCTCCACACCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTTTGAGGTGGACCCCCAACCACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGCCATGGTGAATTTATCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="7188" stop="8485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7488" g_stop="8185" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7488" e_stop="8185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTACATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCATGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCTCCACACCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTTTGAGGTGGACCCCCAACCACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGCCATGGTGAATTTATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTAGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACAACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="7750" stop="9068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8049" g_stop="8768" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8049" e_stop="8768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCTGGGGGATATACTTCTCCATAAACAAACTAGAGAATAAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCATCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTTATGACAGTCAACTAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAATTTCATGCTGATCATTTGTCATGATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATATCTAATGAGGCATCAATACGAGGAGCCATAGTGGCTGCATGTTCTACCTCTGAAATCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGAGTGGCAATCCCTCATTCTGCACTTGTTCATTTTTCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCATTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="7752" stop="9015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8052" g_stop="8715" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8052" e_stop="8715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCTGGGGGATATACTTCTCCATAAACAAACTAGAGAATAAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCATCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTTATGACAGTCAACTAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAATTTCATGCTGATCATTTGTCATGATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATATCTAATGAGGCATCAATACGAGGAGCCATAGTGGCTGCATGTTCTACCTCTGAAATCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGAGTGGCA-ATCCCTCATTCTGCACTTGTTCATTTTTCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="9298" stop="73632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9598" g_stop="9934" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9598" e_stop="9934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATACCAAGTAATATCATAAAATAACCTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTTACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTCTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCTCCTAAATCTACATGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="19217" stop="20370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19833" g_stop="20070" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19833" e_stop="20070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGTTCCGACACATAGTGGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCAACACAAGTGGAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATCGTATGGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAAATGTTAATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="19218" stop="20614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19834" g_stop="20314" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19834" e_stop="20314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTTCCGACACATAGTGGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCAACACAAGTGGAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATCGTATGGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAAATGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGAATTTTATGATATTACTTGG--TATATATTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCGTCACATCGGATCTTTGGGGTGAGCTAATGTTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTG-ATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTA-TGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356257" ref_strand="+" ref_description="SGN-E356257 [cTOS-20-J8]">
      <seq>aaaacacttagaaaatctgaaattgggtactgaaaatcgactctctgaacttcgtgacggaatgacaggacggaccatcacaggcgtgacggaccgtcatagattgttcagtggaaattgactctctgacccttgcgacgacctgcaggacggaccgtcacagtcacgacggcccgtcacaggttgcgcaaatcccaggcagaatcggatttccttacacgttttaagggacgtttttggactattctttccttaattatagatttcgtgggtttatattaataactcaaattcttggggttaaaagaggtaaccctaagttaattagtggggtattattgccatcttttattcttaattatatgttaatttggggtaaaagaaagagggttttgaaacgagaccctgcgatggtccgtcgtgcccatgacggtccgtcgtggggtccgtcgcttctgccagtttttccagaaataaagtctgctgctcaaaacgactaaacgggtcgttacattatttgactctatcactttaattttctagttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="24833" stop="49475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25133" g_stop="25522" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25523" i_stop="49039" i_length="23517">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49040" g_stop="49154" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="504" r_length="115" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E356257" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25133" e_stop="25522"/>
          <exon e_start="49040" e_stop="49154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTTGTGACGGAATGGCAGGACTGACCGTCACAGGTGTGACGGACCGTCACAGACCCTT-GGTGGAAATATTGGGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTGGGACTATTCTTTCCTTAATTATAAATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATATTAA-TTAGGGTAAAAGAAAAAGGGTTTGAATAAGAAAATAGAAAGAACAAGAAGGGAGAGAGAGAAACGATCGAGAAGAAGAGGAAAACACCAAGCTTTGAGGATTAACTTGCTTGATTTCAATTCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTACTATATGCTTAATTGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGAGGATGCCTTGGTATAGAGAAGGCTTGATGATTTACAGAATGATATTAGTGGATCGGAGTGTCACGTTCCGACACATAGATTTAGTGGATCGGAGTGTCACGTTCCGACACATAGATTTAGTGGATCGGAGTGTCACGTTCCGACACATAGTATTAGTGGATCGGAGTGTCACGTTCCGACACATAGATTTAGTGGATCGGAGTGTCACGTTCCGACACATAGATTTAGTGGATCGAAGTGTCACGTTCCGACACATAGATTTAGTGGATCGGAGTGTCACGTACCGACACATGTAGGGGATCGGAGTGTCACGTTCCGACACATGTAGGGGATCAGAGTGTCACGTTCCGACACATGTAGGGGATCGGAGTGTCACGTACCGACACATGTAGGGGATCGGAGTGTCACGTTTCGACACATGTAGGGGATCGGAGTGTCACGTACCGACACATGTAGGGGATCAGAGTGTCACGTTCCGACACATGTAGGGGATCGGAGTGTCACGTTCCGACACATAGAATTAGGGGATCAGAGTGTCACGTACCTACACATAGTGGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAGGAAAGATAATGAATCTTGAAAGATGATAATATACTCAACTTAATAAACTTAATTCCCAAAAGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGATGGTAATTGTTAATGATAAAATACTTGTTGTTGCTACATGTTGAGTTTTCTAGTTGATTTACGATAATATTGATATATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCCTTCATGTTATTTGTGGAGTACAGCAAACGTGCCATCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTCGAACCTCCGGCATAGACTAGCTTCTTATGCATTTTTAGCTTTTAGAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGTCCGGATTTGGGTCGTGACACATGTCATAGAGAGTGTGCACACTCTCTTGAAGGCAAGTGATGAGAGCACAGATACATGTTATTTTTTAATTTGTTAATTTTTAATTAGTTAGTACACATAATTATTGATATTAAAACTATATATATATATATATATATATATATATATATATATATATATATATATTTGTTTCTTTCTTTGCAAAATATTTATTTTAATTCCTTTTCACTTTAATTTTTTTAAAATTAATTTATCATCTTTTCACTTTTAATTATTTTAAATAAATTGTGTGTATTTAAAAACAATTTAAAAGTGTCCTTTAATTTTAGTGTTCTACTTGATTTTCTTCACTTATTTTGATATCGCTCAAAGTAACTTATTTTTAATACAAGACATTTGAAATCAAATCAAAATGAAAGACAGAGAAAATAAACTCAATAGAAAAATAAAAGAGAAAAAAATGAATGTAAGAAAAAAAATTCGATACAAAGTAAAAAAAGGTTAACTTACTTTAAATACAAGATTAAATAAATGAGAATATTTTTATTTAAAAAAATTAAAAATTTCTTTTTAAAAAAAATACGAAATATTTTTTTAAAAAAATTAAGAAATATTTTTTTAAAAAAATTAAAAATATTTTTAAATTTTATTTTTAAAAAAATTATTTACACTAATGGCGGGCGAGTGTGTACAAACACAACTAACTTGGGTGGTTGAATGTGTCATGTCAGCACAAAAGATGCACAAAAATTTGAATAAAATGAGTTCAGGGTAATAGAATCTTAAATAAATTTAAGTGTATTTGTAAAACTTCAATCATAGACTAGAGATACTTATGTACCTAAAATTAAATGCATTATTCATGTCTTTTCTCTATTTTTTTTAATGAATTTGAAAGAGTTTATCAAGCTAAGGATTCTGTCTCTCTATTTTTTTTTCTTCATATTTCACTTGTGAAATTATATTAAAAATAGGCTTAAGTCATCTGCGCCCCCTTAAAGTTGTCCACATAATTCACTTAGACACCTGAACTAGGACTTATACCTATTGAACACCTAAATTATCAAGAAATGTGTCTATTAAACACAAAACGCTAATGTGGCAAAATAAGTGTATCTCACTGCTGCTGAGCGCGTGAATGCATTTTTTTATTTTTTTAAAAATATTTATATCTACTTTGTTGACACTTGGCATGCATTGACTAAATATATAAAAAAAATAAATTAATTAAGCATAAATCTTTTAAATCATAAGAAAAAAAAATACCCCACACTCATCTTCTTCAACCCACTTAAAAACTTCAAACTTCTCTGCCTTTTGTTATGATTCATTTTTTTTTTCATTTTCTGTAAACAAAATACCTGTTGAATTTTCAAGAAGAAGAAAAAATGGACCATTTGGAGTTAAAAAATTTATCAATATCTGTACATTTTTATTTTCTATAACTCCAATTGAGCAACTATCACCATTCATAAACTTATTAGTAATGCTATAAAATATTTGATATAATTTTAATTTCTCTTTGTTGTCGATTTCAAAATAATTTATCAAGATCGATTATATTTACAAAATCGGAATAGTCGTCGAAGGAATAACATATAACGAAGAAAATGAAAGAGGAAAACATTTGGTGGATGAATTCGGAATGAGATGGGGTTAGGCATTTTTTTTTGTTATGTAGAGGAATGGTGATTGTGGAACAACAGAGAAGAAGAAGAGAAGAAGATGAAGAAAAAAGGGCAGTAGGTTAGATGGGATGGGGGTCAGGTGGGGGTGAGGGTGAGGGTGGGGGAAAGATTTTTTTTTAATCAATTTAATTTTTTATATATTATTAAATGAAGGAAAATATTCTTTATTTTTTAAAATTAAAATTATAGGCCCATATGCCACGTGTTGTTGTTCTATTCGTAATTTTTGTCAAGATAACGAGTGTGCATTACACGCACAATATTTGTAAAGATAGTTGTTATTTTATGTTCAATAGATAAATATTTATTAATATTAAAGTGTCTAATAGGTAAGAGTCTCAGTTGAAGTGTTTAAATGAATTATGCGGATAACTTTAAGGGCTATCGATGACTTAAGCCTTAAAAATATGTTATTATTGTTACATTATTAAAGAATATTTAATATTATTTTCTTATGAAAAATTATAATTGTTTCTGTAAGTTTGTAAGTTATCATGACCTGGTGTGATTTTGGTAATTGTCTAGAATGTATGGAGGAGCAGACATGAAAAAGGTTCTTACAGAAGCATCTTGCCACTTGAGTATTTTCTTTATTTTCATCTTAACACCCAAAATAATAATAAAAAGATTGTTGGATAATAAAGATATATCAAATGAAAAATTATCTCAATATATTATAATTGATTGATTTATTAGTTTAGTTTCATTATTCATACATATTAGATGTTTGGTTTAATTTTTTGGAAAATAATATTAAACTTTTTATTTATATTGTTCAAAAGAATTGATTGTTGAATTCAAATTATTATATTTCACCCGCAAATTTAAAATTTATTTAAAATAAAAAAAGTATTAATTATGTGTGTAAAACCTACTTCCAAATGAAAATGTGTTAGTTAATAACTATATGTTCACATAATTTTAGGGAAAAGACATTCACCCTTTAAACTGTATCACAAAGTCAGTTATATGCTAAGTCGGCCTATTACACACTTATATTACTCAAAAGTGAATTTAATACCACCCTCGAAGCTGACATGGAAATAAGATTAAATAAAAATAAAAAGAGGTCCGTTTGAGTAAAATAAAAAGAGATGCGTTTGATTAAAAAAATGATAAATTTTTTCCCATCCCACCTTTCTCCTTTACATTACCCTACCTTTGTTCTTCCTCCATTTTTTTCTTATCACAAACACTATTTCAATAACAAATTCGTCAAGTCAAGTCAAGAACAAACTATTCAATTTTTTTTTTGTCTTTTTGTTCATTGTGAGCATTTGAATTTTTTTTTAAAAAATCAGTTTTCCTTTTTTTGTGTAAAAAGTTTTTGGGTTTTTGCACAAAATTTCATTTTTTTAATATATATTCATAGATCCTCCTTCTCTCTTATAAAAATTTTCTCTAGATTTAAATCAAAATCGGTAATAGTAAATCAAGCACTAGTTTTTCAATTGTCGGACTAAAATCTTTACAATTATAATACTGCAGCTTTTCGCAATTCTCCTCTTTGAGCTTGAATGCAATTTCTATATTGTGATAATTTTTTGTGGTGAGTTTGGTATTGGGTGAAAGATTAGTGGTGATATGACTTTTAATTCAATAATGACAATGATACTCATGATTTTAATGTGGATGGTGAATTTATGATTATGATTGTGATGAATTTCAATGATAGTAATATGGTTTTGATGGTTAATTAGTTAAATTTATGATGTTTGTTATCGATTTTTTTATGACAATGATTGTGCGAAGATTCCAATGATGAGTTTGATTATGAGTGGTGAAATCTATGGTGGTGGAGAAGTGATTTGATGATAATAGCTACAATGGTAGTAATTTAATGGTGGTTTTGATGGTGTATAGGGAAGAAGAAGAAGAAGAAGAAATTGGGTGACATGGATTTTTTTAAAAAAAACTGACGTAATTATTGATGTGGCAGTGACATGATGATAACGTGGCGCGAGTGTGAAATATTTTCTCATCATGTGACTGATTGTATGTGCGTAAGGATTGAAATAAATTCACTTTTAAGTAATTTAAGTGTGTAATAAGTCATTACAATAGTATAAGCGTTAAACTGACTTTTCGTGTTAAGTTTAGGAGGAAATTTATATCTTTTGCCCATAATTTTAAGCACGGATAAGCTTATTTTTGTTACATTATAATAGAATAGTAAAAATGAATTTATCAACAAATTAACAAGATTTCTTGACTAAATTTGTACTTGACGATTTTAAACTTAACAAGTATACGGATGTGTTAAGATTTGAATTATTTAATTAGATAAACTTTTAACTTTATAGTTAGTTAATATTTTTCATATTCCTCTTGATAAAATATATTAAGTGTATATTTATTTTTAAAAATATTGTAAATTATTTTTATATATACACGTTTTTTTCAAAATCTTTAGTGACTTATTGACTCGTAATAGATAGTTATATGACCACAAAATATTTATGAAGAGAAAAAGTGAGGGTGATATTTTTCTTTGGTCAAGAAATACAATTATATTTTTTTTAGATTGTTTTTATTCATGTGCAATTGTAAAAGAATTGGAAAAATATTTAATTCATTTAATTATATTATATGTGCATTGCAAAGAAATTGAAGAGACATTTTAGAATATGTTAAACTTAATTTGTTTTTACTTTCATTAATTACTCCACACAACTTTTTATTTTTATGACCTATAAGGTAATTAATATTCATATCCATCATATTATTTGATATTTCATATTGTAGTCCGGTAAATAATCATTACAAGATTTTATAGAAGATCATAATAGCCTTTCAGGTTTTTATATTTTTTATGCTTATTATATTTAAATTTTAATTTGATTTGAAGAATAAGATGAAAATGGTGAACGACTCGTGGGATTGGACGTCCATAAGAACTCAAAAGATATGTATATTGATTCCATATTTTTCCTTCTATTTTAATGAGTCAGGAATTAAGAATGAAGTTGCATTTTTATTGATATGATTATCTTTAGGCATAATACATATATAGAGTTTTATCCAAAAGAAAGAAAAATATTTGTTTTGAAGAATTTTTGACTTTTAGAATCGCCACTTAATTTTTTAAAGAAAAAATCAAGAAAAAACTATTGTTTTCAAAAGACTTAAACAGATAAAGATCATTTGAAAACATAAAAGGGTTCAACGATTCATATAGTATCTTAGGAAGGTATTCAAGGCACCTAAAATATCCGCAAAATACAGTTAAACGGCAACTATCTTAATTTGGCTAAAATATCTAAATTTTTACTTAAGGAGTTTTCTGAAACAAGTAATCAATTTATTATATAAGTAAAAATTGATTTGTAAATTTATTTACTTTTACCATAAAATCAGTTTGAAGTAAATTTTAAGTAGATAAAATATTTACGGTGTTTTGCAGGGATTTGAATTCTTTAACCATAAGACTAGTGAGAATCAAACGACAAATAAATAAACTAGAAATAAGAGAGAGGGAAAGAGGATTTGGTCCAAATCCTGGTTATCTGTTTGCCTGGATCGGTTTTTGAACCCACCTGTCTTGGATTTTTGACCCTCTTGTTTTGTACCTGTCCTAAGTTGTAGCAAAATAATACAATAATAAATATAAATACGGAAAAGAAAAACAAGTGCTTAGGCCAAAAGACAAAAAGATACAATTTTTTTGGCAAAGTAAAATTTAGGCTCTTATGGCCTAATTTCTTCCACTTCTGCCACTTCAAATACCTCTATGTCGATTTAAAAGTGGGACACTTGATGGAGAAATTATGACTCCCTCGAATTGCAAAGAGGAGGTGAGAGTCCATAATGGACTCGGATAAGTTGACATGAGAAAATAAAATAAAATTAGTAAAGCAACACCACAGTAATCAAGGTAGAAAAATAAAAGCAACTTAATTATTGACATTCCCCTCGTTCAAAATGAGTATATTAACGAACGGAATGTAAATTATGCTCGCCTAATTCAACTTTTCAGCAGACAGAGGGTATAAAATCTAATAAACTACCCAAATTTCATTCGCATTAAACAAGAAATGCCATAGAAGACCACGGGGCAAACGACAAAAGATTAAACAAGCCAATTTTCACGTAAAGTTCAAGCAGCCTATCCTACCACACATGCGAAAGATAAATTAACTAACAAGACGAAAACATATATTAATCTTTTTTTTTCCCCTAAAACAGATGAACGAGTTAATCAGCAGACTTTTCAAAATTCACTCCTAGCAAGTTACGGGATAAAAAAAAAAGGCATCCAGACCAAACTGTACAAGACATGAAAGGAAAAGAAGGGTATCAAGAACCAAATAAATGTTCTAAGAGTTGATGCAAGACAGTAGACTACAAGCTCAGCTATAAGACATTCAGATATAAGGCCATCAAATAAACTCGAGAATCGATGTTTAGCCCCAACTAGTGGTGGAAGAATAAAGAGAATAACATCTCACATAGACCCAACAAGATCTTAACGCACTGAGGACAAACCAAACGAGAGGAATGACCTGACAACTAAGCTAAAAGAGAAATGAAAAGTAGAGAGGAAACAACACACAGAACAAAACGACGTCTGAATATTCCGATAACTTGAGCCAACTAAATACACACAGAACAAAACGACGTCTGAATATTCCGACAACTTGAGCCAACTAAATTTATTCGTGCGAAAAATGTGAAGATCGTGGAATATTGAAATAATCCATAGAAGAGGACTTTCAAACTTCATGACTAAATCACTACTTCACAGCAAGTTCTAACAGTAAAAAAGAAAAAAAAATCGGAATCAAAGAAAAACATCAAACGAAATGGACACAAATAACAACACCAACTTACTGGCAGAAAACTATCCTTAGACTCCAACTGATAGGGAGTCCAAGACTTTCTATAAGGGCCTAAACTAAAATTTTTAGACCGACCTCATCCCATAATTAACAAGCTGAACATACATATATCAGATTTGACACTAAACCAGTCACGCGATACAAATTTGTCACCTAAAAAAAACTCACATTTAAACTTGAAAACAATGACATCAGATTTCAGCAAACGCGATGCTAAACATCTTAATGATCCATCAAAGGTAGTAAAGAGAGGTCAAAGTAGGCAACCAGATCGTTAAAGAGATCAGACATGGCGCATCAGCAAAACAGGCTTCCAGAAACTAAAAAAAAATAAATCAAAATATAGAGTACGAGAAAATATTGCAAGGGAGGAGATGTTACCTTTTCCGGGGCAGCGAAACTGAAACAAGACGAGTAGGGATGGCTGAAACCTTAACACCACTAGGAACGCGACTTTGAAAAGGTTGGTAACGAACCAAAATAAACAACACCGAAGCTAGGCAAGGAACGAGATCCTCAACCTCTTTTGTATATTTTGCTTCTCCCTGACACTAGTTGACTCTAAGAATGTTCTTTTTCTTTAAATTCTTTCTCTATATTTTCTTAATTCACTGCCACTCCGTCCCTTTTTTAGGTTTATGTGTCTTATGGCTCAAAAAAAATCTCTTATCTCAGAGAATGAAGAGACTATATATAGTGTAAAATTAGGGTTTCAAATTCTTGAAAGGTGGGGTGGATATGGGTCCAAAACAGACCCATTTCGAGTTCCTTCATTCAAAATTCAAAAAAAAAAAAAGAATCACCAATTTTGGCTGAACAGTCTGTTTTCTGAACCTTCCGCCTTTTCCAAAAAGAAAGGGGAGAATGAAAGCCTCAGATCGATCTCCCGTCCTTGGGGAGCTTTGTGGCTTGATCTTAAACTATCAAGGACGGTTTCGCGTGAGCCTTTCTGCCATTTTCAAATTCATACCGATCGGAAGGGACGTTGGAGATATACGACAAAGGAAAAGCTGTCTATGTAGTGTGCGCACAAGGCGTGACCTGCCATGAGTTGGAAAGGAAACTCCATGTATCTCTGTCAATTCGCCGCTGCTTGAGATTTGTACATGCCTCTTGAACTGTCGAACGTTGGCGCTGGAATTTTCTGGTGCAGGAGTTGGGATTTGGAAGAGGAAAAGAGTCGGGTAGGGTATGCGTATAGGAAATTGGGCTAGGTAAAAAATAATAGTGGCAAGTGTGGGCTGCTAATGTTATTGTAATGTAACGTTGGGGCTGGCAAAAGAGGTAAGAAACAGCCCAACTAAAAGAATTTCCTTTAAAATTGTAGCCCATTGATATTTAAAATTTAGTCGCATTTGGAATTAACCGGTGAATTTGATAAAAAATCTGTAAGACAAATTTAGAGAAATTAATTAATGAGCTTCTTAATCGAATAAAATAAAATAAATAATTTAAATATAAATTGATTATTCAATTACAAACCACTTTACTCAAATTTGTAACTATAATTTTAAATTAAAATGAAATTGCCCGCCTGAAAGCATAAAATCTTTTGTGACAATTTTTTATATTTAGAATGTTGTAATTTTATGCAAAGCAAGTATATTATCTAGGAATTCTAAAACCGATAAAGCTAGTTAAAATCTTGCAAAATATATGTACATACATATATATTTCAATTTTTAGAATACTAATACTTTATCATTTAAAATTTGAGGAAGCTTAATAATTAAGACATTTGTGAACGTCCAAAATTGGGTGTCAACATATAGGACCCTAAACTTAACTTCAAATTTTAATTTTGACCTCCAACTTTCATAGTGCACAAATAGACACTTTAATTATCCTACCTTTTAAAAAATAAACACCCGATTCTTGGAGACAAAGAGCATGAAATGGAAACGATCCCATGTGTATTAGTGAGCACTCAATGATTGCTAACTAATTAAATATTTTACACTTTTTTAAAAAAAATATTTTACACGTCATTTAAGAACTAAAAACATTAATATCAATTTTAATTAATATACAAGGGTTAAAACAATTAATTAGCTCATTTCACCCGATTGTGAATTGAATCATCTCAAATGTGAAAACCCTAGGTTATCAGTGGAATCAAAATCTGGGAATGATTCAATATTTCTGCTGAAGCTGATATTCATCTGTTCATGTTTCTCGATTTAGTTCAGGTATGCCTCAGTTTTGCTCTTTTGAAAGTTTATCTTTGATACAAAGTAGAACCTTTTTGTCAACATGAGTGTAAAATCATTGTTTTTTTTACAAATTTATGCATATGGTTCATATTATAGCTATTTTTCACAATGGAGGTCACTTTTATAAAGGTCAATATGTGTCAAAATTAGGAAACATCATATAGCATAGATAAGGACTTCTCTTTGACCGGATTGAAATCGTATGCAAAAGAAATTTGGTATGATGAAGTTGATGTCTTTTTAGTGAAGACCCTACTCTACCCATAATTTTGTCAAGTTAGAAAGTAACAACCAACTATGTAACTTTGTTAAAAATTTGTGGAGTGAGTAATCTTTTAAGTTGTTTTCGAAGCATGTAACTGATAAATAAAGGGGGTCCATTGCTACAACCACATTAGGACCATTTTTTGTTGAAAAAAATAATCAAAAATTGAGAAATTGCTCTAAGGTTTCACACACTGAGCATGGTAAAAATGGGGTAGGTAAAGTTGAACAACCATTAGAGAAAGAAAATGGTTATTCTCTTAACTTTGAAGAGGATGACTTAGATGATGTTCTAGATCAGGCTGATAGTGAAATTGATGAAGAACTGAGAGTTTTTAGAGAAAAACTTAGGGAAGACAAAAAAAAATGAAGCTGCAAAGCAAAAAAGTGAACTAAAAACCCCTAAAATGATCAAGGTGTTGAGCTTGAAAAAATTGGCATAGATAAGGGATTTGAAAATATCTTCACCAATAAGGCAGTCAAATATAATGGGAAATTGGGAGATGATGAAGTATTTATTGATTCATCAGATGAACTAAGTGAAGATAATGATGAGGAGCTAGATGTTTTAGCACAACTGGGTGTTGATTTACCTTCAAAAAGAAAAAAACAACAAACCGATGTATGATTTTTCATATTCCATTTCTAGTTTTGAGTTGGGTATGATATTTGAGAGTGCAACTCAATTTAGAAAGGTTGATGCTGATTATAGTATTCAACATAAGGTTCAGTTAAGGCTTAAACTCAATGAACCTCATATAGTTAGAGTAAAATGTGAAGAAAAGTGTAAATGAGAAATCTTTGCAAACTTGGATAAAGATTCTGGATTTTTTTTTTAAAAAAATAAATACTATCAGGCTTATAGATGTATTTCAAAGAATAGGAACACGTTGTGCACAACCAATTATGTGGAATTGAAGATAAGGGATAAAATAATATCTCAGCCTGACATGAGAGTTCATAAGCTTCAAGAGAGACACTAAGAATAAATGGGGCTTAAAAGTGAGAAGATCTATATGTTACAGGGAAAAATGAATGTTATTGTCAAGTTCTTCGGAGATTGGAAGCTTGAGTTATTAAGGTTGTTAGACTATACTGATATAATTAAGAGTACAAATACTGAGCGTTCTTGTTGGGTTAGAACTGATAATGAAACAGTCTCTGGCTTACACTTGTTCAAATATCTCTATGTTTGCTTTGCTGCATTGAAAAATGAATGGTTGAAAGGTTGTTGGAAGACTATAGGATTGACTGGATGTTTTTTGAAGGGTGCTAGAGAAGAATTATTAGTGGATATTGGAAAAAATGGAAATAATAAAATTTATCCAATAGCTTTGGCAGTGGTTGATCAAGAAACTAAACACTCTTGGAGTTGGTTCATAAGCTATCTCATTGAAGACTTGCAACTTGGTGATGGAAGTGGCATAACAGTCATGTCTGACATGCAAAAAGTATTTTATTTTGCCTTTGTTTATTTATTGCAACTTATTGCCTTCTGAAACCATGTAAATATATGTTTCTTTACTAAATTTTGTCTCATAGAAGCATTTCATTTTACATTGTCTATGGTCTTTGAATTGTGCAGCATTTAGTTCTGCGTGTGTTTGTGTTTGCTGGGATTTGGTTGTCAAGATTAAAACAAGGTTTCTTTTTGTACTTGTGATTTGTTATGACCTGTTTTTGTATAAAAATAAATGGAATTGATACTGTAAAACAGAGTTGTAAGCTTTCAACATGATTTGTCTACAAGACAGTGGCGTAGCCAAGAATTTCATCAAGGGTGTCCAAACTTTTAACAATAACTTTTTTAAAAAGAAATCAATAATTTAAACTACCGAAACAAATAATCAAATTAAGCAATATTTAATTAAATATAAGTAATTTTTAACTAGAATTACTAGTGTATAATTCAAAACTAACATAAAGAAATTAAAGTACTATTGAAAACATAATTCAAAAATGTTAGTACAACTGTACTCGATTAAATATTTTCTTTTCTACATAAGACACTATACAACCGTCTAGAAATATTGAGATTCTATATTTAATAATATGGTGACATAATTTGGGTTATTCCGTCTCTTACTTATAGAAAAAAAAAACCTTGTTCCATAAGAATTTTTTAAAAAAACAATTAAGGAAATTTTATTACATAAGGATAAGGTATTAAAATTTAAGAAAATAATTCAATTTTAATTGAAAAAATCAAAAAGGAAAAAATATTAAATTTTAGAAATCTTATTCCACAATGAAAAGGTATTAAAATTTAAGGAGATAATTCATTTTTAATTGAAAAAAATTATTTTAAAGAAATAATTCATTTTTTAATTGAGAAAAAATAATTAGTGAAAGAGGAATTCGAACTTGGGTTGCTAGAGCAAGTAATGACACATTTGACCACTAAGCTACTAAACATTTATTTTAAAATTACGTATGCCTATTTACTTAATTAAATTCAAGACGTGAAAATAATTAAAGAAAGAAGAAAGACCCTTGTGGGGAATTAAACCCGGGCAAAGAGTAGAATAGCGACAGCTATTGCCGACTGCGCTACGCCTTATTTAGAATTTTTAGGGAGTCCAAATTCTATATATATAAATATTAAATTAAAATTGTACGTGTATATATTGCGTAATTTTACGACGAAAGGTGTCCAATTGAACACCCTGAAACCTACGTGGCTCTGCCCCTGCTACTAGATATATATAATTGTACTACAACAATTGTTGTTTGCATACACCATTTGGATATCTTCATAGAGCTGTAAGTTTTCAACTTGATTTGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATATATTTATTTATAATTGTACTACAACAATTGTTTTAAAATATAAATTGGCAACACACTTTGAAGTCCATAGTCAAAGAACTTGATACAGCAAAACTTAATGTCCCTTGAACAAAGTCCACTGAAAACTACTGATGTTCATAAGATTTCTTTGTTTATTTCGATTAGTTATTGTCACTGCTTGTTATTAGTGCATGAAGTAAGAAAAGTTAGTTATTGTTTCTGTTTATTTATCTTAGTTATTGTCAATTGCCTGTGGATGTTGTTAGTGTGTTTAATAAGTAAAACATGCCTTAAAAATATTGATTTAATATTTCTTAGGATCTTGAGGTAGCAGTGGAAGTTTTACTTTCTAATGCTGAAAGAAGAATGTGTGCAAGACATATTTGGGCAGTGGTAAAAAAGATTGAAAGGTGAGTAAAGAAGAAAAACATTTTGGGGGTGTTTCAAAGCTAGTTTTGAGGTTAAATTTAGAGATGAATTTGAATATTTAGGAAAATTGAGTCACAAAATGTGTGAGTCATTGCTTGGATATAACAAAGAATATTGGTGGAGAGATTTGTTTAGCGAAAGATCAAAGTGTGATGTGGTGAAAATAATATGTGTGACACATTTAATTGGTGGATTGGTTAGACATAAATATGTGAATTGTATTCTTGAAGATATTAGGCATAAAATGATGGAAATGCATAGAGATATGATTAAGTTTGCAGATACTTGGATGAGTGATATTTCATCTATGACAAGACTTAATTTAGAAGAAAACAAAGAGATTGACAGGGAACTTAGGGTGAATTAGAATCATGTCATTGGATTTGAAATCCACGAAGGAGAGTATAGACACATAATTGACATGACTAGAAAGAGATGTGGCTATAGGTTGTGGCAGTTGAGAGGCATACCTTGCCAACATGCAGTTTGTACCTCATATCACAATGGGCAAGTATCAGAAGATTATGTGGATCATTGGTAAAATACATTCTTAAGTGCTTATAAGTATTTTTATAACTCATATGGTAATGTGGCCTGACCAATAACCCACCAGTTTAGCCTCCTGAAGTGAAGCCAGTGTCTGGAGGCTGAAAGATCAGGTAGATGTAGAAGAAGAGATAAAGATGAACCAAGAAAAAAGAAATAGGGGAAAATATCAAAGAATGGAGTGAAGATGTAATGTTCCAAATGCCATCAAGTTGGGCATAACAAAAGAACTAGTAAATCAATGGTAAACATTTTTGTCTTTCTTTTAAGTTTTAATCAGTTTTATACTTCTAATTTTGTGTCTTTACAACTCTTACAACTGTCGACACAACAGCCTACAAGACCCTTTCAACAAACACCAGTGAGGCAGCCTTCACAACCACTAGTGAGGCAACCTAGCCCTAATAATGTTGTTCTTTATGTGCATATACTTCAAAGGTTAAAGGAAGGAAAAAGAAACAGCCAACTGCAAGGGCAACATCTTCTTCAACTGCATGGACATCATCTTCTTTTATTGGAATGCCACAACCTTCTTTAGTTGGAAGGCCACCATCTTCTTCAGTTGGAATGCCACCAGCTCCTTCAGTTGAAAGAAAAAGAACAAGAGATGTGAGATTTGGTGTTTACACAAATATACAAACTGAAAGACAAGTGATTAACATATGTATATTGCCTTCTTTAATTGATTTTCTTACATCTTTATTTAGGTATACTAAATAATTCCCTATGGATTATGCATCTAGAAAGATCAAGTGAAAGGGTTATCTCAATTGAAAAAAGGGTAGCATTTAAAGATGCATCACAAACAAATGTTGATCTTGGATTCAAGCCACCTAGTTTGAAATGAAAAGGAAAAGATATAATGACTAGAAATCAACTTTAACAATAGTCAAAGAAATTTGGGTTCTAGAAGAGTTCAAAGTGTTAGTGATGTGTATAAATGTTGATCTAGGAGGTTTTTTTTTATTTTGATAATTGTTTTTAGAGGCATACTCCAATTACTGATCATTATGATGTATTTTGGGTTATTTTGATGTATGTTGGCATATACAAATCTTTGGAGGTTATTTAGATGTCCTAATTTCATGGATGTTAAGTTATGTTTTGTGAAGTCTTTTGGTGTTTGTTATGATTGATGTTAGGCTGCCTTGATGTTAGATGTTTACTATTTATGAAAGTGTGTGAATCATGCTAGTCGATTGAAGTAATGTCCTTGTAAATTGTATTTGTGATGAATATTGAAGCCAATGTTGAGAGACAAACTATTGTCAACTCTTAAATAATGCATTTCAATCCATTACTTTGGTTACTCGCAATAGATATTGGCAGCGACTAACCCATAAAGAAAGCTACATTACGAACAAAATGATTTTGACATGAATTCTTCAACCAATCTACGTAACATTTACTACATAAAGAACTCTATAAATTCAAGATAGTGTCACAATGAACAGCAAAACTCGATATTTCCTCCTAATCTTTTCTTTTCCTTCATCATGTTTTTTATCCTCTTTTTTAATCCTGAAATAGAAATTCAAGCGTCTTCAGAATAACAAGTTCATACTCCCTAAAAAACATGCATCCAACTAATTTAAGAAGAACAAATTCACTATCAAAATTGAATCTTGAGAACTAAAATTTAAACAAAAAATCATACTCGACCATCTTAACATCCAAGAAACCAACAACATGGATTGTTTGCAGACAAAGAAATCTTCATTGTAGCTTTTTCTCCACAATGACAAAAAAAAATTAGAAGTCATTTTCACTAAATACGAGCTCAAATCATTTTAAAGAGAGGAAAGAATCTTGGTTTGAATGAGGAGGAAAGAGAAATGAGATTTCGATTTGGAAATATAAAAATGTATATAAAAGGGATTCATTAAGGATAGAGTTGTCATTTCAATATTTTTTACTATTGTGGGCTTCGAAAATTACTTCTCAATTGCGCAGAATACATGCATTTCATGCGTTTTGTCAGGTAGGACTCGCGTGTTTATTTATTAAAAGGTAGATATTTAAATTGACTATTTGTGCACTATAAAAGTTGGAGATCAAAGTTAAAATTTGAAGTAAGTTTAGAATCCAATATATGTATTATGCCTATCTTTATTTTGCATCTTATATTTATTGCAGATTTTTGGTTCATAGTATTAAAAAATTTAATAATTTTTTATTGAAACTCTACTAAATAATAATCAAACATTTTTCTCTTACATAAATATTGTATTTAATAAAATTATCAAATTTTTTCACTCTTTATAACTGCACAAAGAGCAGAAAAAGTTACTCCCTACGTTTAAAAAAAAGATGATCTAACTTGACTTGGAATGGAGTTAAATTAAAATTATATAAAATGTATCAAAATACCCTATAATTTTGTGGTCTTAAACATGTCAAGTGAAAAGCTAAAGATAAAATGTTTTCAAAAAAAGGAAAGAGATTATTTTTTTTGAAACAAACTAAAAAGAAAATAGGAATATTCTTTTTGTAACGGAGGGAGTAGTTTTTAAAGTAAAGTAGGATTGTGAAAAGGATTGGCAAAAACTTTATTTATAGGGTAATTAGTTTTGGGGTTCTGTGAATTCGTGGTCATGTCTCCACCTCCACCGCAGCCGCCGCCACCGCAACCACAACCGTTGGTAACATCAAAAGATGAGAGCAGAAACGAATCGGATTCTAAAAATATGGATGAAACGGATTCAGATGTAGAAGAATATGAGGAAGATGTAGAAGAATATAAGGAAGAATGGGTGGATGAGGAAGATAATGACTCTGAGCCACTATCTCCTCGATCGGATGACAACTATGACAACCTGAGTATAGAAGAATTAATTGAAGAATTGTATACCCCTATACTTCCTTGTCAGGAAAAAAGGACAGAGAGTTTTGGAAGAGATACTTCCATCAGGTCCGTTAGAGTGAGGTATCATCTTTTCTATCTATTTGTTGATATTCCCTGTTTTTCGCTCATTCTGTTTGTTGTTATTCCATGGTGTTCACTCCTGTTGTTGTTGGCTTCTATTCTGTTTTTCACTGATTGTTCACATTCCTCTTTATCTTCAACCCTCCATTACACTAGATTCCCAATTCACAGTTATGTACAAAAATAATGTAGGCAAATATTGGACTATTACATTCATCACATGTTAAGTTTTATGGTCTGGTCTTTCTCCAAATTACCTCCTGCACATGACATTTTATGTTTCAATATCCGGTCTCACCTTTCCATCAGGTAAAGTAGTATTTTATTCGACTGACTGACTCTATAATTTGTTATGTCTTAGATGGATTTTCAATGAAACTTAAGACTATGATAGTTAAAGAAACTCAAAAGGGGTTTAGGAAAGATACATTGATGGATATATACTTCTCAAAAACATTAATTGATACCCTAACTTTATAGAAAGGAAGAAATTAAAGGACTTCAAGAAAAGAGTTTATAATATGCTTGCTCATGTTTTCTAGCATAACTATGTATGCCAAGCGTGAGGTTTAAATGCTCAATTTTTCTGCTTCAATTATTTTCGGCTTTCAACTCTTACAATCTCTAGGCCCTAATAAAAGAAAAAGGGGAGTTGTCCAAAAGTTTGAGAAAAAATTGGAGCATTCCACATATCTGATTGTTCTTCCACATGTATATTTATATAAATACATGTGGCTGTTATATATATATATATATATATATATATATATATATATATAACTTCTGCAGTCTTTAAGAGCTTACTTCTCACAAGAACATATTGGTTGAAATAGGTGTTGTTTGTATCTAATTGGTTTGACTTGTACTTTAATAGGGATTTGACATTAGATATTATCCTGTTTTTTGTAGATTGGCTACTGTACACCCCAACATTTTAAAAGGTCAGCTAATTTTTAAATGTTGAAGGGTTATGCTAGAGAGGCACTTGGGCAGTACAATCAGAAGAATGTATGTTCTAGTCACACTTCCCATTGTCTTTCTAGTTGTTCTTTTTCCTTGTTTCTCTTGAAATTTGAGAAAGTTTATGTTGGATTCATTTTACGAAACTAAATATGAGGTCAAGGATATTCTCAAGGTTAATCGATCTGGCTGTAAAGACATCAATTTCTTTAGTACCATTACAGTTACGAATGACGAGAAGGAATATTTTCAAGCTAAGGTGGTGCGTCATCTAGATCAATCTTTGGATTTCCTGATCATTAGGCCAAGGGTAATGAGAATTTCTTTTTTACTTTTCTTCAAGTTTCATAACTTAAAAGAATTAATGACTAATTTTTCAGCATTTGCAAATTATTAACTCTCTTGTGCTCTAATGTAGGTGAAGGAAAGTCGAGGCATAGAGTAATATATGAGGTGTGTGCATCATTTTGGCTGGTGTCAAGCTTTATTTTGGCTGTGGTCAATGTTGTTAGTAATTGAAAGTGGATTATCTAAGTCTACAGTATATGTAAAAGGGAGGAAAAACAACTATTATAATTTGTGGAAGATTGTTGGTTTAAATTTAAGACGATATAATTTTGATGTTTTATGGCCCTCATGGCCTCCATCCAGACCGGCTCAGTCCACAGCCAAAGCAGGGATAGAGTGATAGACTCACTTAGGGAAGTAACAAGGATGGATCCTATTCAGTCAAAGAAGGCTACATAATTACTGTTGAATCTTTCCTAGAATTTATTAGCTCCATAGGCTGATGTATGTTGATAGTTGTGATAGATTTTTTGCCTTCCAAGGAGCTGATAATCTCTTTGTAAAGCTTGCATCTTCTGGATGGTTTTTGCTAATGTATCCTTTATATTTCAAAAAAGAATTGTGATATTTTATTATTATACATCCTATTATTTTGGTTGAAGCTCAAGAAAAATAGTATTTGAATTCCTTGTATTGGCGTCTCTTTTTTATGTTATTACAAAAGTAAAGATATGTTGTCTGGACTTGCCACTAAAGTTGGATCCTCCAGAATTAATTCTTTTCTTGAGATCCTTCACAGATGCTTTGGAGAGTCTGAACAACATACAAGTAGAGTACCATGAATAAGTTTTTGATGGTTGTATTTGTTATCTAGTCTGAAACATATACTTCATCTGTTCCCAGAAATATAAGGTCTTTGTGGAAGAATGAACTTAACCAAGTTAGACCGGTGACAAATTCTTTTCACTACTTGGTAAGAATTATAGAAGGTGAGCTTACATTCCTACTTAGGGGTTGTTTGGTCGGGTGTATAAGAATAGCAAGAGCCTATTTGGAAAGCCATACTGGTAATTGGATTTAGTGTAATTACACTGCATTCTCCAATTAACACGAGGAGGATAGGCGCGCAATGTGAATTTCAAATGGAAACTCAAGTAGACGGTAACATTTAAGAAGAAGAAATTTTCTTGTATCCAAAAGTAAATTGGCGAAACCCAAAGCCCTTTTCCATTCAATTTACTACTCATACATATTTCTTTATTGGAAAAGGGTCTGATATACCCCTCAACTTTGTCATTTAGAGCTGATATACCCCTTGTTATGAAAGTGGTTCATATATACCCCTACTTGTAAACAAATGACTCAAATATACCCTTTTCCTCTAACGGAAATGAAAAAAAAAATTTAATCTAAATTTTTATTATTTTTTTCTAAAAAATATAATCCCATATGAGTAAATTTAATTCTCATCAAACATATTTTTTTTTGAACTTTTTTGTTTCAATGACTAATTTATAATTATTATTTTGATAATCAAATTTATTTATGTTTCACTAATATTCTTGTAAAACTTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTAAAATACACACAAAAAATAGTTTAATTTTTTTCTTTAAACTAAGGAATAAAAGGAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAAAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATGCCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATAATTTTTTTAATAAAAAATTACAAGTAATAAATATAAATTTAAAACTAATGTTTTAACTTCCGTTAAATGAAGGGTATATATGAGCCATTTTGTAATGACAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCAGATATGTTCCACTTTTATAACGAGGGATATATCAGCTCCAAATGACAAAGTTAGGGGGTATATCAGACCCTTTTCCCTTTCTTTATTGATTGACATGTGATTACAACTCGATTGATTTTACTTTTGTGGTGGGTTTTCTTGTCTGGATCGGATAGACATTTCACCATCACCATAATAATCTAAAATATTTGGGGATTTTCTCTCAATGTGAATACAATAATGGCTGATATTGAGATTTCGTTATATTTGTAAACTAGGTTAAAGTTGGATCATCGACTGAAGATAGAAGAAAGATCAAAATGTTTTTATTACCATTTTGATTGATCCACATAAATTGATGAGACTCCTACTGTGATTTTTGTTCCCCGAGTTTTACTACTCTTCTACATTGGAGCAGTATGCTTCTTGAGGTTCTAATGGCATTAGCTAAAGGAAACATGAAAATAGTTGGCTTAAGAATATTTGGTTTGATTGGAAAAAACACATTCTTTTGCTGATTGAAGATTCATTGCGGCTAGTAGTTATTTGGGGACACCGAGTATTAGTAAGATTACTATATATTATAAATCCTCAAAAATCATCTCTATTTCTTTGTGATGTAGTAGGGGTAAGGTCTATGTACACTCTAGCCGATCTAGACCCCACTTGTGGGATTACACTGGGTATGTCGTTGTACTATCGAAATTTGTGGAAATGTGTGTTTTGATAGTCAAGCTTCTAAGTTGGAACTGTTTTTTCCCTTTCTGTTAATGAATAAATGTTGACATTATTTTGTTCATTAGGGTATAATTCTCCCGCGAGTTGGCAAATTGTTTGTCAAGATGATTTTTTCTTTAGTAATGTCGTTGTTCGACTGATGTGTTAGTCTGAGAGATGATAATCTAATTAAGTTTTGAGCTGGATAATTTGCTTCACTTGCATTTGGATGATTTTCTGTGGCATCATGGAACATGGATAATTGTTTTTTTCTGAAGGTGTTGGTGAATTGCTTGCATTTTGGGAAAATTTACTTTCTACATCTCATGGAAGCTGTATTTGCAGAGGAGTATGCTGCGTTTGTGTCACGAACCAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAACCTTAACATTTCAATATAATATCAATAGAAAGTAATGCGGAAGACATTAAATAAAGACCAATTCATTAACTTCTAAAATTCAACATCTATTATTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTAAACTAAGAGTATTCTAAGAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAATTACTGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAAATAAACAAGAAGAAAACATAAAAGTAGGGGTCAATACAAAACACGGGTACTGAGTAGATATCATCGGTCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCTTCAATACCATACTCATTTGGGAATCATGTTCGTTAGATTGCGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGCGTCGGTTCGTGACACCCGATCCCCTAAATCTATGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTAAGTGTCGGTTCGTGACACTCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATCTCATTCTATCAACTCATCAAGCCTTCTCCCTTACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCTTCATCATTAAAAAGAGATTAGGTTTTTATCAAGATTTGGGATTCAATAACTTCATCATGCTTAATATAATCACAATTATATAATCACGTTCATGCATGCATACAATTAAGCACATAGCAGGGTTTACAATACTATCAACGCATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATAACCTACCTCCACCGAAGAATTGCGATCAACAAGTTATCTTCTCAAAATCCTTGCTATCCTCTTCGTTTCTCTTTCTTTTTCTGTTTTCTCTTTGTTCTTTCTATTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAACATATAATCAAGTGTAAAAGATGGCAATAATAACCCACTAATTAACTTAAGGTTACCTTTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACCTTATAATTAAAGCAAGAATAGTCAAAAACGTCCCTTAAAACGTATCAAGAAATCCGACCCAGACTGGTATTTCGCAGTCTGTGACGGCCCGTCGCGCCTGCGACAGTCCGTCCTGCTGCCCGTCACAGAGTTCAGAGACTCAATTTCTCTGAAGAATCTGTGACGGTCCGTCACACCTGTGACGGTCCGTCCAGCCATTCCATTACGAAGTTCAGAGAGGCGATTTCAGTACCCAATTTTTCAGTTTTTCCAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTCGCCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAG</genome_strand>
        <mrna_strand>AAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGACAGGACGGACCATCACAGGCGTGACGGACCGTCATAGATTGTTCAGTGG-AA-ATTGACTCTCTGACCCTTGCGACGACCTGCAGGACGGACCGTCACAGTCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTTGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTT-GGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATGTTAATTTGGGGTAAAAGAAAGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689149" ref_strand="+" ref_description="SGN-E689149 [t3_tus_80_F08]">
      <seq>gttgtttcctctctacttttcatttctcttttagcttagttgtcaggtcattcctctcgtttggtttgtcctcagtgcgttaagatcttgttgggtctatgtgagatgttattctctttattcttccaccactagttggggctaaacatcgattctcgagtttatttgatggccttatatctgaatgtcttatagctgagcttgtagtctactgtcttgcatcaactcttagaacatttatttggttcttgatacccttcttttcctttcatgtcttgtacagtttggtctggatgcctttttttttatcccgtaacttgctaggagtgaattttgaaaagtctgctgattaactcgttcatctgttttaggggaaaaaaaaagattaatatatgttttcgtcttgttagttaatttatctttcgcatgtgtggtaggataggctgcttgaactttacgtgaaaattggcttgtttaatcttttgtcgtttgccccgtggtcttctatggcatttcttgtttaatgcgaatgaaatttgggtagtttattagattttataccctctgtctgctgaaaagttgaattaggcgagcataatttacattccgttcgttaatatactcattttgaacgaggggaatgtcaataattaagttgcttttatttttctaccttgattactgtggtgttgctttactaattttattttattttctcatgtcaacttatccaagtccattatggactctcacctcctcttttgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="-" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="33723" stop="32356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33423" g_stop="32655" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="-" ref_id="SGN-E689149" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33423" e_stop="32655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTTCCTCTCTACTTTTCATTTCTCTTTTAGCTTAGTTGTCAGGTCATTCCTCTCGTTTGGTTTGTCCTCAGTGCGTTAAGATCTTGTTGGGTCTATGTGAGATGTTATTCTCTTTATTCTTCCACCACTAGTTGGGGCTAAACATCGATTCTCGAGTTTATTTGATGGCCTTATATCTGAATGTCTTATAGCTGAGCTTGTAGTCTACTGTCTTGCATCAACTCTTAGAACATTTATTTGGTTCTTGATACCCTTCTTTTCCTTTCATGTCTTGTACAGTTTGGTCTGGATGCCTTTTTTTTTTATCCCGTAACTTGCTAGGAGTGAATTTTGAAAAGTCTGCTGATTAACTCGTTCATCTGTTTTAGGGGAAAAAAAAAGATTAATATATGTTTTCGTCTTGTTAGTTAATTTATCTTTCGCATGTGTGGTAGGATAGGCTGCTTGAACTTTACGTGAAAATTGGCTTGTTTAATCTTTTGTCGTTTGCCCCGTGGTCTTCTATGGCATTTCTTGTTTAATGCGAATGAAATTTGGGTAGTTTATTAGATTTTATACCCTCTGTCTGCTGAAAAGTTGAATTAGGCGAGCATAATTTACATTCCGTTCGTTAATATACTCATTTTGAACGAGGGGAATGTCAATAATTAAGTTGCTTTTATTTTTCTACCTTGATTACTGTGGTGTTGCTTTACTAATTTTATTTTATTTTCTCATGTCAACTTATCCGAGTCCATTATGGACTCTCACCTCCTCTTTGCAATT</genome_strand>
        <mrna_strand>GTTGTTTCCTCTCTACTTTTCATTTCTCTTTTAGCTTAGTTGTCAGGTCATTCCTCTCGTTTGGTTTGTCCTCAGTGCGTTAAGATCTTGTTGGGTCTATGTGAGATGTTATTCTCTTTATTCTTCCACCACTAGTTGGGGCTAAACATCGATTCTCGAGTTTATTTGATGGCCTTATATCTGAATGTCTTATAGCTGAGCTTGTAGTCTACTGTCTTGCATCAACTCTTAGAACATTTATTTGGTTCTTGATACCCTTCTTTTCCTTTCATGTCTTGTACAGTTTGGTCTGGATGCC-TTTTTTTTTATCCCGTAACTTGCTAGGAGTGAATTTTGAAAAGTCTGCTGATTAACTCGTTCATCTGTTTTAGGGGAAAAAAAAAGATTAATATATGTTTTCGTCTTGTTAGTTAATTTATCTTTCGCATGTGTGGTAGGATAGGCTGCTTGAACTTTACGTGAAAATTGGCTTGTTTAATCTTTTGTCGTTTGCCCCGTGGTCTTCTATGGCATTTCTTGTTTAATGCGAATGAAATTTGGGTAGTTTATTAGATTTTATACCCTCTGTCTGCTGAAAAGTTGAATTAGGCGAGCATAATTTACATTCCGTTCGTTAATATACTCATTTTGAACGAGGGGAATGTCAATAATTAAGTTGCTTTTATTTTTCTACCTTGATTACTGTGGTGTTGCTTTACTAATTTTATTTTATTTTCTCATGTCAACTTATCCAAGTCCATTATGGACTCTCACCTCCTCTTTTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323523" ref_strand="+" ref_description="SGN-E323523 [cTOC-7-O14]">
      <seq>ttgtttcctctctacttttcatttctcttttagcttaggtgtcaggtcattcctctcgtttggtttgtcctcagtgcgttaagatcttgttgggtctatgtgagatgttattctctttattcttccaccactagttggggctaaacatcgattctcgagtttatttgatggccttatatctgaatgtcttatagctgagcttgtagtctactgtcttgcatcaactcttagaacatttatttggttcttgatacccttcttttcctttcatgtcttgtacagtttggtctggatgcctttttttttatcccgtaacttgctaggagtgaattttgaaaagtctgctgattaactcgttcatctgttttaggggaaaaaaaaagattaatatatgttttcgtcttgttagttaatttatctttcgcatgtgtggtaggataggctgcttgaactttacgtgaaaattggcttgtttaatcttttgtcgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="-" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="33722" stop="32632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33422" g_stop="32932" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="-" ref_id="SGN-E323523" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33422" e_stop="32932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCCTCTCTACTTTTCATTTCTCTTTTAGCTTAGTTGTCAGGTCATTCCTCTCGTTTGGTTTGTCCTCAGTGCGTTAAGATCTTGTTGGGTCTATGTGAGATGTTATTCTCTTTATTCTTCCACCACTAGTTGGGGCTAAACATCGATTCTCGAGTTTATTTGATGGCCTTATATCTGAATGTCTTATAGCTGAGCTTGTAGTCTACTGTCTTGCATCAACTCTTAGAACATTTATTTGGTTCTTGATACCCTTCTTTTCCTTTCATGTCTTGTACAGTTTGGTCTGGATGCCTTTTTTTTTTATCCCGTAACTTGCTAGGAGTGAATTTTGAAAAGTCTGCTGATTAACTCGTTCATCTGTTTTAGGGGAAAAAAAAAGATTAATATATGTTTTCGTCTTGTTAGTTAATTTATCTTTCGCATGTGTGGTAGGATAGGCTGCTTGAACTTTACGTGAAAATTGGCTTGTTTAATCTTTTGTCGTTT</genome_strand>
        <mrna_strand>TTGTTTCCTCTCTACTTTTCATTTCTCTTTTAGCTTAGGTGTCAGGTCATTCCTCTCGTTTGGTTTGTCCTCAGTGCGTTAAGATCTTGTTGGGTCTATGTGAGATGTTATTCTCTTTATTCTTCCACCACTAGTTGGGGCTAAACATCGATTCTCGAGTTTATTTGATGGCCTTATATCTGAATGTCTTATAGCTGAGCTTGTAGTCTACTGTCTTGCATCAACTCTTAGAACATTTATTTGGTTCTTGATACCCTTCTTTTCCTTTCATGTCTTGTACAGTTTGGTCTGGATGCC-TTTTTTTTTATCCCGTAACTTGCTAGGAGTGAATTTTGAAAAGTCTGCTGATTAACTCGTTCATCTGTTTTAGGGGAAAAAAAAAGATTAATATATGTTTTCGTCTTGTTAGTTAATTTATCTTTCGCATGTGTGGTAGGATAGGCTGCTTGAACTTTACGTGAAAATTGGCTTGTTTAATCTTTTGTCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708366" ref_strand="+" ref_description="SGN-E708366 [FA35CC08]">
      <seq>cgtttgagagttcaagaggcatgtacaaatctcaagcagcggcgaattgacagagatacatggagtttcctttccaactcatggcaggtcacgccttgtgcgcacactacatagacagcttttcctttgtcgtatatctccaacgtcccttccgatcggtatgaatttgaaaatggcagaaaggctcacgcgaaaccgtccttgatagtttaagatcaagccacaaagctccccaaggacgggagatcgatctgaggctttcattctcccctttctttttggaaaaggcggaaggttcagaaaacagactgttcagccaaaattggtgattctttttttttttttgaattttgaatgaaggaactcaaaatgggtctgttttggacccatatcccccccacctttcaaaaatttgaaaccctaattttacactaaaaaaagtcccttcattcccggaaaaaaaaaatttttttttgacccataaaacacataaccctaaaaaagggacggagtggcattgatttaaaaaaatatagaaaaaaattttaaagaaaaaaaactttcttaaagtcaactagtgtcggggaaaagcaaaatatacaaaagaggttgaggatctcgttccttgccaaccttcggggttgtttattttggttcgttaccacccttttcaaagtcccgttcctaggggggttaaggtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="-" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="35141" stop="33840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34841" g_stop="34140" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="-" ref_id="SGN-E708366" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34841" e_stop="34140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTCGACAGTTCAAGAGGCATGTACAAATCTCAAGCAGCGGCGAATTGACAGAGATACATGGAGTTTCCTTTCCAACTCATGGCAGGTCACGCCTTGTGCGCACACTACATAGACAGCTTTTCCTTTGTCGTATATCTCCAACGTCCCTTCCGATCGGTATGAATTTGAAAATGGCAGAAAGGCTCACGCGAAACCGTCCTTGATAGTTTAAGATCAAGCCACAAAGCTCCCCAAGGACGGGAGATCGATCTGAGGCTTTCATTCTCCCCTTTCTTTTTGGAAAAGGCGGAAGGTTCAGAAAACAGACTGTTCAGCCAAAATTGGTGATTCTTTTTTTTTTTTTGAATTTTGAATGAAGGAACTCGAAATGGGTCTGTTTTGGACCCATATCCACCCCACCTTTCAAGAATTTGAAACCCTAATTTTACACTATATATAGTCTCTTCATTCTCTGAGATAAGAGA-TTTTTTTTGAGCCATAAGACACATAAACCTAAAAAAGGGACGGAGTGGCAGTGAATTAAGAAAATATAGAGAAAGAATTTAAAGAAAAAGAACATTCTTAGAGTCAACTAGTGTCAGGGAGAAGCAAAATATACAAAAGAGGTTGAGGATCTCGTTCCTTGCCTAGCTTCGGTGTTGTTTATTTTGGTTCGTTACCAACCTTTTCAAAGTCGCGTTCCTAGTGGTGTTAAGGTTTC</genome_strand>
        <mrna_strand>CGTTTGAGAGTTCAAGAGGCATGTACAAATCTCAAGCAGCGGCGAATTGACAGAGATACATGGAGTTTCCTTTCCAACTCATGGCAGGTCACGCCTTGTGCGCACACTACATAGACAGCTTTTCCTTTGTCGTATATCTCCAACGTCCCTTCCGATCGGTATGAATTTGAAAATGGCAGAAAGGCTCACGCGAAACCGTCCTTGATAGTTTAAGATCAAGCCACAAAGCTCCCCAAGGACGGGAGATCGATCTGAGGCTTTCATTCTCCCCTTTCTTTTTGGAAAAGGCGGAAGGTTCAGAAAACAGACTGTTCAGCCAAAATTGGTGATTCTTTTTTTTTTTTTGAATTTTGAATGAAGGAACTCAAAATGGGTCTGTTTTGGACCCATATCCCCCCCACCTTTCAAAAATTTGAAACCCTAATTTTACACTAAAAAAAGTCCCTTCATTCCCGGAAAAAAAAAATTTTTTTTTGACCCATAAAACACATAACCCTAAAAAAGGGACGGAGTGGCATTGATTTAAAAAAATATAGAAAAAAATTTTAAAGAAAAAAAACTTTCTTAAAGTCAACTAGTGTCGGGGAAAAGCAAAATATACAAAAGAGGTTGAGGATCTCGTTCCTTGCCAACCTTCGGGGTTGTTTATTTTGGTTCGTTACCACCCTTTTCAAAGTCCCGTTCCTAGGGGGGTTAAGGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="49521" stop="50298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49821" g_stop="49997" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49821" e_stop="49997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTCGAGTGATAGCTATTATTGTATAAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATCACGCACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCA</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="51072" stop="52030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51372" g_stop="51730" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51372" e_stop="51730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACGCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAAAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTACAATACCATTCTCAAATGCTCTTCATGTCCCTTCTTGTTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCTGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="51521" stop="52779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51821" g_stop="52479" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51821" e_stop="52479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACTTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAGCTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATCGAAATAGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCAGACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATGGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATTATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="-" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="53616" stop="51609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53316" g_stop="53130" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53129" i_stop="52387" i_length="743">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52386" g_stop="51873" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53316" e_stop="53130"/>
          <exon e_start="52386" e_stop="51873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGAAGGATGTCGGCCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTTAGTCCACAAGAGCAGATTCGTCATTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACTGGTCAACTCTTCTCTGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCTAAAATAGAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGTCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACATGTAATCTGCTGGTTTGTGATTGCATGGCTTCTTTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAACTTACATTGTGAATTACTTGATATGCCTATTCATGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATAATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCCATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTCTGCCACCAGATAGGGATATTGATTTCTGTATTGACCTTGAACCGGGTACTCGCCCTATTTCGATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGCTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="51590" stop="137739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51890" g_stop="52651" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51890" e_stop="52651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAGCTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATCGAAATAGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCAGACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATGGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATTATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATATCAAGTAATTCACAATGTAAGTTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATAAAGAAGCCATGCAATCACAAACCAGCAGATTACATGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="51590" stop="52850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51890" g_stop="52550" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51890" e_stop="52550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAGCTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATCGAAATAGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCAGACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATGGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATTATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATATCAAGTAATTCACAATGTAAGTTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355026" ref_strand="+" ref_description="SGN-E355026 [cTOS-19-F16]">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="51817" stop="52959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52117" g_stop="52659" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E355026" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52117" e_stop="52659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATGGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATTATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATATCAAGTAATTCACAATGTAAGTTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATAAAGAAGCCATGCAATCACAAACCAGCAGATTACATGTGATGACAGCATCAGATGCCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="52200" stop="53357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52500" g_stop="53057" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52500" e_stop="53057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGAATAGGCATATCAAGTAATTCACAATGTAAGTTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATAAAGAAGCCATGCAATCACAAACCAGCAGATTACATGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAAC-GCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTATTTTAGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGAGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="-" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="78313" stop="8546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54719" g_stop="54017" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="-" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54719" e_stop="54017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTGCTACATCGGAAATTTAGGGTGAGCTAATGCTTCTTGCTTAGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTCTTAGAATACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTT-GGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTTTATTT-A--A---T--GTCTTCCGCATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTAGATTGGTTGGTTCGCTTACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTGGGCCGTGACAAACTTGGTATCAGCGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATAC--ATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTGGAGCAACGACTACGCCAACACCAACACCAGCACCAGCGGGACAGGGTGCGTCTGAGCCAGCTACTGGGGCTGTAG</genome_strand>
        <mrna_strand>CAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGACTACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCA----TTCTTTCTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCAGCACCGGCGGGACAGGGTGCGACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="-" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="55405" stop="54569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55105" g_stop="54867" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55105" e_stop="54867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGAAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACGCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="-" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="74009" stop="55002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73709" g_stop="73308" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73709" e_stop="73308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAA-TAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAATCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349296" ref_strand="+" ref_description="SGN-E349296 [cTOS-2-P10]">
      <seq>gaaaaactggcagaaatgacggaccccacgacggaccatcatgggcacgacggaccgtcgcagggtctcatttcaaaacacttaggaaatctgaaattgggtactgaaaatcgactctctgaacttcgtaacggaatggcaagacggaccgtcacaggcgtgatggaccatcacagagtcttcagtgaaaatccagtctctgaaccttgcgacgacctgcaggacggaccgtcgcaggcacaacgggctgtcacaggctgcgtaaatcccagtctgagtcggaattcctcaattgttttaagggacgtttttgactattcctgctttaattataaagttagtgggttaatgttaataagtctaattacttgggggttaaaagaggtaaccttaagttaattagtgggttattattgccatattttattcttaattatatactaattagggtaaaagaaagagggtttgaataaagaaaatagaaagaacaagagaaagagagagaaagtcgaacgagaaagaggatcgaacgagaggaaaaaacacaaagcttgggaaatcacttgcttgatcacgaatcttcggtggaggtaggttatggtttctcttacgatattcgtagtaagctcttaatagcgaataatatgtattgataatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="-" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="79797" stop="73325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79497" g_stop="78960" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78959" i_stop="73747" i_length="5213">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73746" g_stop="73625" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="660" r_length="121" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="-" ref_id="SGN-E349296" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79497" e_stop="78960"/>
          <exon e_start="73746" e_stop="73625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACTGGCAGAAATAACGGACCCCACGACGGACCATCATGGGCACGACGGACCGTCGCGGGGTCTCGTTTCAATACACTTAGAAAAACTGAAAATTGGGTACTG-AAATCGACTCTCTGAACTTCGTAACGGAATGGCAAGACGGACCGTCACAGGTGTGACGGACCGTCACAGATTCTTCAGAG-AAATTGAGTCTCTGAACTCTGTGACGGGCAGTAGGACGGACCGTCGCAGGCGCGACGGGCCGTCACAGACTGCG-AAATCTCAGTCTGGGTCGGATTTCTTGATACGTTTTAAGGGACGTTTTTGACTATTCTTTCCTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGACATTATTGCCATCTTTTATTCTTAATTATATGTTAATTAGGGTAAAAGAAAGAGGGTTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAGAGTCGAACGAGAAAGAGGA-GAAACGAAGAGAAACAAAGCTTGGAGAAAAATTTGCTTGTTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTAAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAATAAAGAAGGCTTGATGAATTGATGGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATTGGGTGTCACGAACCGACACGTAGTATTAGGAGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGATTGGGTGTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCAAGTTCACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACATACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTTTGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTAACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAACAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTCTGTATTTTTAGCTTTTAGAATACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCATATTTTGGGGAATAATAGATGGTGAATTTTAGAAGTTAATGAATTGGTCTTTATTTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTAGATTGATTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTGGGTCGTGACATATACATTGACAAAAATCAAACACATCGTCTTTGGGAGTAACTCGTAGCCGTCTCTAATGGGAAACTATCTCTAGCCAAAGCACCTTTTAAAATGAAATAATTAATTGTTAGTGTCCCACACAAACAAACAAATGCAAACCTGACTTAGTAATATATTCTTGTCAATTTCATTTACTAAAAAGGAAAACAAACAAAATTTATCAACATGTACCGATCCATTTTGGTCGTTTTGAGTGTAAAGTCTTGTGTTTCATAAAATATTTTTTTCGATGAATTCTAATTGAATTTTGGACTATTCATAATTTTATTAGTGGGGTAGTTTTAATAATTTGTTTAGTTAGAGACTAAAGGAAATAAAAATAAATATTAGTGGATCACTTTTACAATGTATAGTTAGTTTTATATAATAATTGGAGAATTGAGATTCTAGAGGAGGAGGAAGGTTTGAGGCGAGTAAAATGGAAGAATTGCACTTCGTAGTCTTTGTTCTCGGCGCCGTCAACAAAAACCGACATAAGAGATTTAAGGTGAAATCCAATTCTTTATAAAACAATGATAGTTTGGTGGATGTTTATTAATGTTAATAATATTCTATACATATAAATTCATGAGTGGAAGAAGGGATGTATATTTTAATTATATATTGTTACTGTGTTGGTGGTGAAAGAAAAGGAATGGAATACTGGTGCATAGTTGTGAGTTTTGAAATGGAGTAATGTTTAGTAGCAGGAAAGGTTACATATTGTATGTGTTTGGTTGATAACTGCCAAGGGAATTAAGGGAAGGGTCATATGTTATTGTTAATATTACTATTATCATTATTGAACTCAGACGAGAGAGTGAGGAAATTGTCTTCAATTGGTAACGTTATATTATAAACTAAGGGATAATCTGCAAATGGATTGCTACCACCGATTGGGAAAAAGGGGATATGGGCAAATTGTGACTACGTGGCGGCAATATGATGTTGTTGCCTGCAATATTTTAGCAGTAATTGACATGTTACGTAAAAGAAAATTGACTTTAGTGTGTTATGAATTTATAGGTTTTGGTGGATTAAAATTGTATTGTAATTGTCTGTTGTAGTTATGGTAAGGAAAATAATAATAATAGTAAACATAATATCTTGGAGGGTGCATATATATAGTATTTAATGTTAGATGAATGGTGAGAGAGAATTTAGGTAAAAAATATTAATGGTGTAAAGAATTGGTGTATTAAAGTGTAGGTGTATAGTGGAGGTGTTCATTGCCACTGGTTATGTAACCAGTGGCTCGAAATTTTAAATATTAAAATGTTTCATCTTCGTTATAAATTATATGTTGATATATTGAGATAGATAATTAAATATAATATGTATTATATTAATTTAATATCATTAAGGTTATGCATATCGGAGGAATTAATGTGTATCCTTAGGTTTGAACTTTAGAAAGTTTAATTATAGAATTAGGCGAGTTTTTGGGTCTAAGGCTAGACAAAGGTTAATATGAGTGCTTGTAGAATCTTCACTTACAAATTATGTGTATATATATTTGATAGATTGAAAAGGTTCAGAAGCATTGAGGAAAGGGAAAGTATTGGAGAAGTAGCTTGCTTGACTTTGGTTCTTCGGTGGAGGTAGATTATGGTTTATTTCTATTTGATAGATAAACTCTAAATAGCGATTGATATGTATCGAGTGATATTGTAAAGTCTCCTATGTACTTGATTGTGTGGTTGTATGTTTTGATTGTGTGGTTTGTGGTTGACCTAAAATTATGAGACTATTGAATTTTTAATCTTGAACCCTCTCTATTAAAATGACGCCTTGAATAAAGAAGACTTGCTGAAATAAAATAATGAGATAATTGGATCGGAGTGTCACGTTCCGACACGGTATTATAGGATCAGAGTGTCACGTTCCGACACGGTATTATGGGATCGGAGTGTCACGTTCCGACACGATAACATTAAAGGCAAAGAATCTTGAAGTAACTTAATATACTTAATCTCAAGAAACCTATTTTCTAAATGAGTATGGTGTGGAGGCATGAGTCCTCACAGGTGTGCGTAATGTTGTGATTGATGGTGTACCTATTACAGTGTTGTTGTTGTCAATGGTTCATGTGTTTGTTGCTTGCCACCTGTTTAGTATTGTAGTTGATTTTATATTATTATTCATTATATATTGGTTTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACGTGTTCCTTGTACTGACCCCTACTTGTATTTTCTTCTTTGTTCTTGTGGAGTGCAGCAAGTGTACCATCGACTTCAACTCGCCCTCAGCTCTAGTCAGTCTCCAGCACATCAGAGTTCAAGGTGAGCTATTATTTCTAGCTCGTGCTGGATTCTTTTATTCACGTCTTGATGTCTTTGAATTTCGGACATGGACCATCTTTGTACTTATTTTGGTTTCTTAAATACTCTTAGACTTGGTAATTTGAGGATAGGTGTTCTTGATGTGATGACTTCCAGATTTTGGGGATAATAAGTGTTAAACTTTAGAAGCTTATTTAATTGGTTTTATTAATAAGTTTTGGATCTTCCGCATTATTTTTGTTATTCATAGTTGAACTATTGGTAAGTGTTGGGGTTCAGATTTGTTGGTTCGCTCACCTAGTAGGTTAAGTGTGGGTGCCACTCATGGCTCGTTTTGGATCGTGACACAATAATACTCTAACTATCTATATAAATGCAATCATTTTGATGTGTATTCTTCCGGCCATTCATTAACACAAATCTTACCTTGATTAAAGTTGAATTTTAACCAAATAATATGTGTATCAGCTCGTGCATACAGTGCCTCTTGTTTTATGGTAGAGTAACAACTTCATAGATAGTCATCTCAAAATCTTTCAACAATAAGCACCGGCGTACATTCACTATTAGCCCTTTACTTGTTGCTTTCAAGGGTAATTCTTATGACGTCCTGCAAAATCTATTATATTTTAGTGTACATCCCAAAAACAGCTCTCTTGATTCTTGTCACATTTAAATTTCATCAACCCCATAGAACTAAATCTAAACTATTCTCATAAATTTAGAAATGGTCGGAGAAAATGAAGGAAAAACATGAAAACTTAAGAAATCTCTTGACTGAGATGAAATAAATCCTCAATTAAGAGTATATTTATACATTAAATGTTGAGTGATGAAAGGTAAGAATAGGGTCAAATATAAAATAGTAAACAAAAGTATCATTTAGTGATTTCGTCGACTTTCGAATAGTTCTACCACACATACTTCTTCAACATCTTCACAAATAGATTTTTAAAAAAGGGAAATCAATTGTAACGACCTGGTTAGTCGTTTTGAACAGCAGATTTTATTTCTGGAAAAACAGGCTGAGGAGACGGACCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGACAGGACGGACCGTCACAGACTCTTCAGAGAAATTGAGTCTCTGAACTCTGTGACGGGGCAGCAGGACGGACCGTCGCAGGCGCGACGGGCCGTCACAGACTGCGTAATCCCAGTCTGGGTCGGATTTCTTTATACGTTTTAAGGGACGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAAGGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAAGAGAGAGAGAGGATTGATCGAGAGAGGAGAAACGAAGAGGAAAACACAAAGCTTTGGGAATTTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAGTATT</genome_strand>
        <mrna_strand>GAAAAACTGGCAGAAATGACGGACCCCACGACGGACCATCATGGGCACGACGGACCGTCGCAGGGTCTCATTTCAAAACACTTAGGAAATCTG-AAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAAGACGGACCGTCACAGGCGTGATGGACCATCACAGAGTCTTCAGTGAAAATCCAGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACAACGGGCTGTCACAGGCTGCGTAAATCCCAGTCTGAGTCGGAATTCCTCAATTGTTTTAAGGGACGTTTTTGACTATTCCTGCTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTATTATTGCCATATTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGGG-TTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAAAGTCGAACGAGAAAGAGGATCGAACG-AGAGGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACACAAAGC-TTGGGAAATCACTTGCTTGATCACGAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAGCTCTTAATAGCGAATAATATGTATTGATAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="-" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="78768" stop="77620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78398" g_stop="77920" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78398" e_stop="77920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACATAGATTTAGGGGATCGGAGTGTCAAGT-TC-ACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACATACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTTTGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTAACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAACAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="79900" stop="80677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80200" g_stop="80376" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80200" e_stop="80376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGTCATATCAATGCTCGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATCACGCACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCA</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551179" ref_strand="+" ref_description="SGN-E551179 [TUS-55-K22]">
      <seq>aaactctactgtcagcgaatcaatccacagcaggaaagtacacgaagaaaaaatgtgtttattaataagtaggaatatcagaaaattcgttagtaaatattctgaagactgaatggtatttataaacaagaataatatattctgaaaggcaaccctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaaattatctctcgatcgatcatttgccaaagccgaagccgaagccgaagcgagcgagcgacgaccacgacggcgcgaggggggttcctctttccaacccttttaataattaataggagtgtttatttatttaaactctcttattttcatttccattaacgatgagggactattgccttttttattaaagcattagaggacttttcaagttcccaacctttcaagttctaaacttttcaaattcctctccttccctctatttcccatcaattcttgctacatacccaacagtaattgtttaatctttgttaagccactttttgtgttgaaattatttactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="90008" stop="91339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90308" g_stop="90564" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90565" i_stop="90735" i_length="171">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90736" g_stop="91037" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="546" r_length="290" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E551179" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90308" e_stop="90564"/>
          <exon e_start="90736" e_stop="91037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTCTACTGTCAGCGAATCAATCCAAAACAGGAAAGTACACGAAG-AAATATGTGTTT-TTAAGAAGAAGGAAGATCAGAAAATTCGTTAGAAAATATTCTGAAGACTGAATGGTATTTATAGGAAAGAATAATATATTCTGAAATGTTGCAACCCTTTCAAAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGAAATTTTTTTAAAAAAAATATAACGGAATTTAAAACGGGTCACGCGCGCAGATCCGAGTCAGGTCGGGTTAGCTAAAAATTTGAAAACATTTCGGTTAACTTCTGTTATCAACTAATTAATTGAAAATAATTTTTGCCATTTAATTAATTAAATAACTAATTAAAATAAATTTGTCCAAAAAATTATCTCTCGATCGATCATTTGCCAAAGCTAAAGCCAAAGACAAAGCCGAAGCCGAAGCGAGTGAGCGACGACGACGACGGCACGAGGGGGGTCCCTCTTTCCAACCCTTTTAACAATTAAAAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCGATGAGGGACTATTGCCTTTTTCATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCATTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</genome_strand>
        <mrna_strand>AAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAAAAATGTGTTTATTAATAAGTAGGAATATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAAACAAGAATAATATATTCTGAAA-G--GCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGGAATTTTT...........................................................................................................................................................................AAAATTATCTCTCGATCGATCATTTG-C----C-AAAGCC---G---AAGCCGAAGCCGAAGCGAGCGAGCGACGACCACGACGGCGCGAGGGGGGTTCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCTTATTTTCATTTCCATTAACGATGAGGGACTATTGCCTTTTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689001" ref_strand="+" ref_description="SGN-E689001 [t3_tus_55_K22]">
      <seq>aaactctactgtcagcgaatcaatccacagcaggaaagtacacgaagaaaaaatgtgtttattaataagtaggaatatcagaaaattcgttagtaaatattctgaagactgaatggtatttataaacaagaataatatattctgaaaggcaaccctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaaattatctctcgatcgatcatttgccaaagccgaagccgaagccgaagcgagcgagcgacgaccacgacggcgcgaggggggttcctctttccaacccttttaataattaataggagtgtttatttatttaaactctcttattttcatttccattaacgatgagggactattgccttttttattaaagcattagaggacttttcaagttcccaacctttcaagttctaaacttttcaaattcctctccttccctctatttcccatcaattcttgctacatacccaacagtaattgtttaatctttgttaagtcactttttgtgttgaaattatttactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="90008" stop="91339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90308" g_stop="90564" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90565" i_stop="90735" i_length="171">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90736" g_stop="91037" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="546" r_length="290" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E689001" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90308" e_stop="90564"/>
          <exon e_start="90736" e_stop="91037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTCTACTGTCAGCGAATCAATCCAAAACAGGAAAGTACACGAAG-AAATATGTGTTT-TTAAGAAGAAGGAAGATCAGAAAATTCGTTAGAAAATATTCTGAAGACTGAATGGTATTTATAGGAAAGAATAATATATTCTGAAATGTTGCAACCCTTTCAAAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGAAATTTTTTTAAAAAAAATATAACGGAATTTAAAACGGGTCACGCGCGCAGATCCGAGTCAGGTCGGGTTAGCTAAAAATTTGAAAACATTTCGGTTAACTTCTGTTATCAACTAATTAATTGAAAATAATTTTTGCCATTTAATTAATTAAATAACTAATTAAAATAAATTTGTCCAAAAAATTATCTCTCGATCGATCATTTGCCAAAGCTAAAGCCAAAGACAAAGCCGAAGCCGAAGCGAGTGAGCGACGACGACGACGGCACGAGGGGGGTCCCTCTTTCCAACCCTTTTAACAATTAAAAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCGATGAGGGACTATTGCCTTTTTCATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCATTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</genome_strand>
        <mrna_strand>AAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAAAAATGTGTTTATTAATAAGTAGGAATATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAAACAAGAATAATATATTCTGAAA-G--GCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGGAATTTTT...........................................................................................................................................................................AAAATTATCTCTCGATCGATCATTTG-C----C-AAAGCC---G---AAGCCGAAGCCGAAGCGAGCGAGCGACGACCACGACGGCGCGAGGGGGGTTCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCTTATTTTCATTTCCATTAACGATGAGGGACTATTGCCTTTTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242172" ref_strand="+" ref_description="SGN-E242172 [cLED-37-C23]">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="-" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="95147" stop="94153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94847" g_stop="94453" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="-" ref_id="SGN-E242172" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94847" e_stop="94453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGATGCAATGATCGAGAAGTTGCCTCCTTCGTGGAATTATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAGAAATGCCAAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCAAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTTTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242208" ref_strand="+" ref_description="SGN-E242208 [cLED-37-E10]">
      <seq>gtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgggattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcccgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="-" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="95143" stop="94181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94843" g_stop="94481" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="-" ref_id="SGN-E242208" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94843" e_stop="94481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGATGCAATGATCGAGAAGTTGCCTCCTTCGTGGAATTATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAGAAATGCCAAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCAAAGAAGAAATTCAAAGGCAACTGTTATAATT</genome_strand>
        <mrna_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGGGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCCCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538064" ref_strand="+" ref_description="SGN-E538064 [TUS-56-P20]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaatataacggaatttaaaacgggtcacgcgcgcggatccgagtcgggtcgggttaactaaaaagttgaaaacaattcggttaatttctgttatcaactgattaattgaaaataatttttggccatttaannttattaataaataattaaaataatttgtccaaaaaatatctctcgatcatttgccaagtcgaagccgagcgagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="94996" stop="96380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95296" g_stop="96162" g_length="867"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="857" r_length="857" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E538064" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95296" e_stop="96162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAATTGCAGACTTGAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAATACAGATTTGAATAATTTCCTTAAGATTGTTACCAATCTATGTTATGAAAATCCGAAATTACTGGTTGTAATAAATCATTCAAAAACACAAAGTAACTGAGATTTTTAGAACCAGTAAATAAGACGAACAAAAATTTATTTGTAAAAAATAAATGAATCTGTAAAACTTACCAGAATCTGGAATACTCTTTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCTGAGGTTTGATTTGGAATGTAACCTCCTAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAGCTCTACTGTCAGCGAATCAATCCACGGCAGGAAAATACACGAAGAAATATGTG-TTTTTAAGAAGAAGGAAGATCAAAAAATTTGTTAGAAAATATTCTGAAGACTAAATGGTATTTATAGGCAAGAAGAATATATTCTGAAAGGTTGCAACCCTTTCAAAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAATAGTGGCGGAAATTTTTTTTTTAAAATATAACGGAATTTAAAAAAAGTCACGCGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACATTTCGGTTAACTTCTGTTATCAACTAATTAATTGAAAATAATTTTTGGCCATTTAATTAATTAAATAAATAAATAAAATAAATTTAAAATTATCTCTCAATCGATCATTTGCCAAAGCGAAAGCCGAAGCCGAAGCGA</genome_strand>
        <mrna_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGGAA-----TTTTT-AAATATAACGGAATTTAAAACGGGTCACGCGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACAATTCGGTTAATTTCTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAANNTTATTAATAAATAATTAAAATAATTTGTCCAAAAAATATCTCTCGATCATTTGCCAAGTCG-AAGCCG-AG-CG-AGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538071" ref_strand="+" ref_description="SGN-E538071 [TUS-56-P24]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgagggttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgagacaaccattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="94996" stop="96167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95296" g_stop="95867" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E538071" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95296" e_stop="95867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAATTGCAGACTTGAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAATACAGATTTGAATAATTTCCTTAAGATTGTTACCAATCTATGTTATGAAAATCCGAAATTACTGGTTGTAATAAATCATTCAAAAACACAAAGTAACTGAGATTTTTAGAACCAGTAAATAAGACGAACAAAAATTTATTTGTAAAAAATAAATGAATCTGTAAAACTTACCAGAATCTGGAATACTCTTTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCTGAGGTTTGATTTGGAATGTAACCTCCTAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAGCTCTACTGTCAGCGAATCAATCCACGGCAGGAAAATACACGAAGAAATATGTG-TTTTTAAGAAGAAGGAAGATCAAAAAATTTGTTAGAAAATATTCTGAAGACTAAATGGTATTTATAGGCAAGAAGAATATATTCTGAAAGGTTGCAACCCTTTCAAAATTGACACGACCATTAA</genome_strand>
        <mrna_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGGTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGAGACAACCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268499" ref_strand="+" ref_description="SGN-E268499 [cLEI-13-K15]">
      <seq>ttataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="94997" stop="96004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95297" g_stop="95704" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E268499" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95297" e_stop="95704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAATTGCAGACTTGAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAATACAGATTTGAATAATTTCCTTAAGATTGTTACCAATCTATGTTATGAAAATCCGAAATTACTGGTTGTAATAAATCATTCAAAAACACAAAGTAACTGAGATTTTTAGAACCAGTAAATAAGACGAACAAAAATTTATTTGTAAAAAATAAATGAATCTGTAAAACTTACCAGAATCTGGAATACTCTTTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCTGAGGTTTGATTTGGAATGTAACCTCCTAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAGCTCTACTGTCAGCG</genome_strand>
        <mrna_strand>TTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716477" ref_strand="+" ref_description="SGN-E716477 [FB17AF06]">
      <seq>caatctttaaatggtaagtcagtgaaaaatatgatacccncttttttgaaatcaaaggattttcacaggatcttgattcccactttttgtctttatgtatgagtctctttgcagctgttgaagcagaaatctgttttgaaagtatggtggttggtcaaagacaaatcttggatcccttttgggtatgaactgaagatttagggttttctacatgtatttggtgtggaaaggtgattgctttttgggtcaaatttatttgatgaagtgagtattaggggatttttataaatggttttggtgtagaaaggtgattgcttttttgggtatgaactgaggatttggggttttgtatgaatagatttggtgtggaaatgtgattgctttttgggttaaatttatttgatgaagtgaggatttggggttttctatgaatggttttggtgtagaaaggtgattgcttttttgggtttgctgaatcttggacaatggcggttccatggagtacaacactatggattgctaagatggtgtggatggcattgagtggttgggtagtcgcttgcttgactattgcagatgaggttgctgcctcttttcgaactggtgatattggtccttttcatgttggttgagttatactgtacagaaacatcatcttctcctttgtttgtgaattgttgcttgcttcttacatattttgtaaatttatggataaatattgtttacagtggtttgatagagctgaagcttcaaatagcaatgtctttagtactttatctgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="104832" stop="106216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105132" g_stop="105921" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="791" r_length="791" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E716477" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105132" e_stop="105921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTTTAAATGGTAAGTCAGTGAAAAATATGATACCC-CTTTTTTGAAATCAAAGGATTTTCACAGGATCTTGATTCCCACTTTTTGTCTTTATGTATGAGTCTCTTTGCAGCTGTTGAAGCAGAAATCTGTTTTGAAAGTATGGTGGTTGGTCAAAGACAAATCTTGGATCCCTTTTGGGTATGAACTGAAGATTTAGGGTTTTCTACATGTATTTGGTGTGGAAAGGTGATTGCTTTTTGGGTCAAATTTATTTGATGAAGTGAGTATTAGGGGATTTTTATAAATGGTTTTGGTGTAGAAAGGTGATTGCTTTTTTGGGTATGAACTGAGGATTTGGGGTTTTGTATGAATAGATTTGGTGTGGAAATGTGATTGCTTTTTGGGTTAAATTTATTTGATGAAGTGAGGATTTGGGGTTTTCTATGAATGGTTTTGGTGTAGAAAGGTGATTGCTTTTTTGGGTTTGCTGAATCTTGGACAATGGCGGTTCCATGGAGTACAACACTATGGATTGCTAAGATGGTGTGGATGGCATTGAGTGGTTGGGTAGTCGCTTGCTTGACTATTGCAGATGAGGTTGCTGCCTCTTTTCGAACTGGTGATATTGGTCCTTTTCATGTTGGTTGAGTTATACTGTACAGAAACATCATCTTCTCCTTTGTTTGTGAATTGTTGCTTGCTTCTTACATATTTTGTAAATTTATGGATAAATATTGTTTACAGTGGTTTGATAGAGCTGAAGCTTCAAATAGCAATGTCTTTAGTACTTTATCTGCAAATATTTCT</genome_strand>
        <mrna_strand>CAATCTTTAAATGGTAAGTCAGTGAAAAATATGATACCCNCTTTTTTGAAATCAAAGGATTTTCACAGGATCTTGATTCCCACTTTTTGTCTTTATGTATGAGTCTCTTTGCAGCTGTTGAAGCAGAAATCTGTTTTGAAAGTATGGTGGTTGGTCAAAGACAAATCTTGGATCCCTTTTGGGTATGAACTGAAGATTTAGGGTTTTCTACATGTATTTGGTGTGGAAAGGTGATTGCTTTTTGGGTCAAATTTATTTGATGAAGTGAGTATTAGGGGATTTTTATAAATGGTTTTGGTGTAGAAAGGTGATTGCTTTTTTGGGTATGAACTGAGGATTTGGGGTTTTGTATGAATAGATTTGGTGTGGAAATGTGATTGCTTTTTGGGTTAAATTTATTTGATGAAGTGAGGATTTGGGGTTTTCTATGAATGGTTTTGGTGTAGAAAGGTGATTGCTTTTTTGGGTTTGCTGAATCTTGGACAATGGCGGTTCCATGGAGTACAACACTATGGATTGCTAAGATGGTGTGGATGGCATTGAGTGGTTGGGTAGTCGCTTGCTTGACTATTGCAGATGAGGTTGCTGCCTCTTTTCGAACTGGTGATATTGGTCCTTTTCATGTTGGTTGAGTTATACTGTACAGAAACATCATCTTCTCCTTTGTTTGTGAATTGTTGCTTGCTTCTTACATATTTTGTAAATTTATGGATAAATATTGTTTACAGTGGTTTGATAGAGCTGAAGCTTCAAATAGCAATGTCTTTAGTACTTTATCTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540130" ref_strand="+" ref_description="SGN-E540130 [TUS-60-D23]">
      <seq>aaagaggtgttgacttggagaatgtagatccttgaacgtgttttggcgaaatctttcttgttcaatatcattgaacgtgttttggctaaagtttcttcaattgctatatatgagatcagtctagcttggaatgttaagacagagctaaggaaactccaaagtactctatccaccatcaaagttgtacttctagatgcaaacgagcagcaggcgaagaaccatgaagtgagagattggctggaaaagctcagagatgttgtttatgatgtcgatgatttgatggatgatttatcaacacaactgttgctgcgaatgcatttcgagtaaagctttaggaagaaggtaaggaagttcttttcaggttcaaatccaattatatatcgattcaagattggcagaaaagtaaaagaaatcaaggagctgctgaatgagattgcagatgattggagaaatttccacttcacggaacatacttatgtaactccagctgagaatacgagtagagaacaaacacactcctttgtgagggcatcagatatcattggtagagatgatgatcaagaaaacattgtataacagctgatagattctcatgatgaggaaaatatttttgtgattcctattgttggacttagagggcttggaaaaccacacttgttaagttggtttataacaataatagggttgttcagaatttcaaccttagattgtgggttagtatttctgaagaatttagtctgagcaagggtattgagaaaattgtgaggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="108719" stop="110088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109019" g_stop="109788" g_length="770"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="769" r_length="769" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E540130" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109019" e_stop="109788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGTGTTGACTTGGAGAATGTAGATCCTTGAACGTGTTTTGGCGAAATCTTTCTTGTTCAATATCATTGAACGTGTTTTGGCTAAAGTTTCTTCAATTGCTATATATGAGATCAGTCTAGCTTGGAATGTTAAGACAGAGCTAAGGAAACTCCAAAGTACTCTATCCACCATCAAAGTTGTACTTCTAGATGCAAACGAGCAGCAGGCGAAGAACCATGAAGTGAGAGATTGGCTGGAAAAGCTCAGAGATGTTGTTTATGATGTCGATGATTTGATGGATGATTTATCAACACAACTGTTGCTGCGAATGCATTTCGAGTAAAGCTTTAGGAAGAAGGTAAGGAAGTTCTTTTCAGGTTCAAATCCAATTATATATCGATTCAAGATTGGCAGAAAAGTAAAAGAAATCAAGGAGCTGCTGAATGAGATTGCAGATGATTGGAGAAATTTCCACTTCACGGAACATACTTATGTAACTCCAGCTGAGAATACGAGTAGAGAACAAACACACTCCTTTGTGAGGGCATCAGATATCATTGGTAGAGATGATGATCAAGAAAACATTGTATAACAGCTGATAGATTCTCATGATGAGGAAAATATTTTTGTGATTCCTATTGTTGGACTTAGAGGGCTTGGAAAAACCACACTTGTTAAGTTGGTTTATAACAATAATAGGGTTGTTCAGAATTTCAACCTTAGATTGTGGGTTAGTATTTCTGAAGATTTTAGTCTGAGCAAGGTAATTGAGAAAATTGTGAGGTC</genome_strand>
        <mrna_strand>AAAGAGGTGTTGACTTGGAGAATGTAGATCCTTGAACGTGTTTTGGCGAAATCTTTCTTGTTCAATATCATTGAACGTGTTTTGGCTAAAGTTTCTTCAATTGCTATATATGAGATCAGTCTAGCTTGGAATGTTAAGACAGAGCTAAGGAAACTCCAAAGTACTCTATCCACCATCAAAGTTGTACTTCTAGATGCAAACGAGCAGCAGGCGAAGAACCATGAAGTGAGAGATTGGCTGGAAAAGCTCAGAGATGTTGTTTATGATGTCGATGATTTGATGGATGATTTATCAACACAACTGTTGCTGCGAATGCATTTCGAGTAAAGCTTTAGGAAGAAGGTAAGGAAGTTCTTTTCAGGTTCAAATCCAATTATATATCGATTCAAGATTGGCAGAAAAGTAAAAGAAATCAAGGAGCTGCTGAATGAGATTGCAGATGATTGGAGAAATTTCCACTTCACGGAACATACTTATGTAACTCCAGCTGAGAATACGAGTAGAGAACAAACACACTCCTTTGTGAGGGCATCAGATATCATTGGTAGAGATGATGATCAAGAAAACATTGTATAACAGCTGATAGATTCTCATGATGAGGAAAATATTTTTGTGATTCCTATTGTTGGACTTAGAGGGCTTGG-AAAACCACACTTGTTAAGTTGGTTTATAACAATAATAGGGTTGTTCAGAATTTCAACCTTAGATTGTGGGTTAGTATTTCTGAAGAATTTAGTCTGAGCAAGGGTATTGAGAAAATTGTGAGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286324" ref_strand="+" ref_description="SGN-E286324 [cLES-11-I19]">
      <seq>aagaggtgttgacttggagaatgtagatccttgaacgtgttttggcgaaatctttcttgttcaatatcattgaacgtgttttggctaaagtttcttcaattgctatatatgagatcagtctagcttggaatgttaagacagagctaaggaaactccaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="108720" stop="109480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109020" g_stop="109180" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E286324" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109020" e_stop="109180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGTGTTGACTTGGAGAATGTAGATCCTTGAACGTGTTTTGGCGAAATCTTTCTTGTTCAATATCATTGAACGTGTTTTGGCTAAAGTTTCTTCAATTGCTATATATGAGATCAGTCTAGCTTGGAATGTTAAGACAGAGCTAAGGAAACTCCAAAGT</genome_strand>
        <mrna_strand>AAGAGGTGTTGACTTGGAGAATGTAGATCCTTGAACGTGTTTTGGCGAAATCTTTCTTGTTCAATATCATTGAACGTGTTTTGGCTAAAGTTTCTTCAATTGCTATATATGAGATCAGTCTAGCTTGGAATGTTAAGACAGAGCTAAGGAAACTCCAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540128" ref_strand="+" ref_description="SGN-E540128 [TUS-60-D23](-)">
      <seq>cgatgattgttccagaggtagtaaaattgttgtcactacacgtagtaagatggttgctttgattactggaacagttccgccttattattgnagaggccttggtaatgatgactgcttatcttatttttgaaatgtgcatttggagggcaggacaatttgtttcctaatctagtagaaataggaaaagaaattgtgaaaaagtgtggaggagtgcctttggctgtgaaaaccttgggaaggttgttgtacatgaaaacagacaagaacgaatggttgcagataagagacgatgagatatgggaaatcgaacagaataaatctgacatcttaccaatattgaggttgagctatgaacagatgccatcacatctaagacagtgctttgcctattgccccatgttacccaaaggtcaagaaattccgtgggaggattttatcaatcgctgggctcaaggatttatccagagttcaaacagaaacaggaagttggaagatatcggtaatcagtactttgatgagttgctatcaaggttttgcttcctagatgtgatacaagcagcttttgatggagaaatattggcttgtaagatacacaatcttgtgcatgatcttgcacagtcagtatcaggtgcagagtgcttaaatgtgaaacccaatgctttcgtggtttctgagagagttcgccacttattcttccatgcagaagatatgtctaggaaatacttccccagatttttgcttcctttgcataaggtgaggtctttttttttattcgtttaatattggacctgtaaacaagttttttgtcaagacaatgttgtcaaatttcaaatgccttcggatgtaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="109635" stop="111082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109935" g_stop="110792" g_length="858"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="856" r_length="856" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E540128" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109935" e_stop="110792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGAATTGTTCCAGAGGTAGTAAAATTGTTGTCACTACACGTAGTAAGATGGTTGCTTTGATTACTGGAACAGTTCCGCCTTATTATTTGAGAGGCCTTGGTAATGATGACTGCTTATCTTATTTTTGAAATGTGCATTTGGAGGGCAGGACAATTTGTTTCCTAATCTAGTAGAAATAGGAAAAGAAATTGTGAAAAAGTGTGGAGGAGTGCCTTTGGCTGTGAAAACCTTGGGAAGGTTGTTGTACATGAAAACAGACAAGAACGAATGGTTGCAGATAAGAGACGATGAGATATGGGAAATCGAACAGAATAAATCTGACATCTTACCAATATTGAGGTTGAGCTATGAACAGATGCCATCACATCTAAGACAGTGCTTTGCCTATTGCCCCATGTTACCCAAAGGTCAAGAAATTCCGTGGGAGGATTTTATCAATCGCTGGGCTCAAGGATTTATCCAGAGTTCAAACAGAAACAGGAAGTTGGAAGATATCGGTAATCAGTACTTTGATGAGTTGCTATCAAGGTTTTGCTTCCTAGATGTGATACAAGCAGCTTTTGATGGAGAAATATTGGCTTGTAAGATACACAATCTTGTGCATGATCTTGCACAGTCAGTATCAGGTGCAGAGTGCTTAAATGTGAAACCCAATGCTTTCGTGGTTTCTGAGAGAGTTCGCCACTTATTCTTCCATGCAGAAGATATGTCTAGGAAATACTTCCCCAGATTTTTGCTTCCTTTGCATAAGGTGAGGTCTTTTTTTTTATTCGTTTAATATTGGACCTGTAAACAAGTTTTTTGTCAAGACAATGTTGTCAAATTTCAAATGCCTTCGGATGTTAGTCTTGAACA</genome_strand>
        <mrna_strand>CGATG-ATTGTTCCAGAGGTAGTAAAATTGTTGTCACTACACGTAGTAAGATGGTTGCTTTGATTACTGGAACAGTTCCGCCTTATTATTGNAGAGGCCTTGGTAATGATGACTGCTTATCTTATTTTTGAAATGTGCATTTGGAGGGCAGGACAATTTGTTTCCTAATCTAGTAGAAATAGGAAAAGAAATTGTGAAAAAGTGTGGAGGAGTGCCTTTGGCTGTGAAAACCTTGGGAAGGTTGTTGTACATGAAAACAGACAAGAACGAATGGTTGCAGATAAGAGACGATGAGATATGGGAAATCGAACAGAATAAATCTGACATCTTACCAATATTGAGGTTGAGCTATGAACAGATGCCATCACATCTAAGACAGTGCTTTGCCTATTGCCCCATGTTACCCAAAGGTCAAGAAATTCCGTGGGAGGATTTTATCAATCGCTGGGCTCAAGGATTTATCCAGAGTTCAAACAGAAACAGGAAGTTGGAAGATATCGGTAATCAGTACTTTGATGAGTTGCTATCAAGGTTTTGCTTCCTAGATGTGATACAAGCAGCTTTTGATGGAGAAATATTGGCTTGTAAGATACACAATCTTGTGCATGATCTTGCACAGTCAGTATCAGGTGCAGAGTGCTTAAATGTGAAACCCAATGCTTTCGTGGTTTCTGAGAGAGTTCGCCACTTATTCTTCCATGCAGAAGATATGTCTAGGAAATACTTCCCCAGATTTTTGCTTCCTTTGCATAAGGTGAGGTCTTTTTTTTTATTCGTTTAATATTGGACCTGTAAACAAGTTTTTTGTCAAGACAATGTTGTCAAATTTCAAATGCCTTCGGATG-TAAAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711023" ref_strand="+" ref_description="SGN-E711023 [FA57CH05]">
      <seq>caatcgctgggctcaaggatttatccagagttcaaacagaaacaggaagttggaagatatcggtaatcagtactttgatgagttgctatcaaggttttgcttcctagatgtgatacaagcagcttttgatggagaaatattggcttgtaagatacacaatcttgtgcatgatcttgcacagtcagtatcaggtgcagagtgcttaaatgtgaaacccaatgctttcgtggtttctgagagagttcgccacttattcttccatgcagaagatatgtctaggaaatacttccccagatttttgcttcctttgcataaggtgaggtctttttttttattcgtttaatattggacctgtaaacaagttttttgtcaagacaatgttgtcaaatttcaaatgccttcggatgttagtcttgaacaatctagatcttgaggagttgccaacttcgataggtaacttgaatgaattaagataccttaaccttagtgacagtggtaatatcaagtttattccaaggtctatgagcaaattagtaaatttgcacacccttaacctcattaactgtgaacagcttaaggagttgccaagagactttagaaagttaatcagcctgaagaccttgtatttgaccacacatcagatattagcagggatcaagaatcaacattctttcacttctcttcaatttttgcttcttttcgaatgttgtttcccaaaattgcagccagaactggtgcagcattttactgaacttcggttgttgcgtatctacgaatgccaagtttatgttctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="110073" stop="111469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110373" g_stop="111169" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="797" r_length="797" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E711023" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110373" e_stop="111169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCGCTGGGCTCAAGGATTTATCCAGAGTTCAAACAGAAACAGGAAGTTGGAAGATATCGGTAATCAGTACTTTGATGAGTTGCTATCAAGGTTTTGCTTCCTAGATGTGATACAAGCAGCTTTTGATGGAGAAATATTGGCTTGTAAGATACACAATCTTGTGCATGATCTTGCACAGTCAGTATCAGGTGCAGAGTGCTTAAATGTGAAACCCAATGCTTTCGTGGTTTCTGAGAGAGTTCGCCACTTATTCTTCCATGCAGAAGATATGTCTAGGAAATACTTCCCCAGATTTTTGCTTCCTTTGCATAAGGTGAGGTCTTTTTTTTTATTCGTTTAATATTGGACCTGTAAACAAGTTTTTTGTCAAGACAATGTTGTCAAATTTCAAATGCCTTCGGATGTTAGTCTTGAACAATCTAGATCTTGAGGAGTTGCCAACTTCGATAGGTAACTTGAATGAATTAAGATACCTTAACCTTAGTGACAGTGGTAATATCAAGTTTATTCCAAGGTCTATGAGCAAATTAGTAAATTTGCACACCCTTAACCTCATTAACTGTGAACAGCTTAAGGAGTTGCCAAGAGACTTTAGAAAGTTAATCAGCCTGAAGACCTTGTATTTGACCACACATCAGATATTAGCAGGGATCAAGAATCAACATTCTTTCACTTCTCTTCAATTTTTGCTTCTTTTCGAATGTTGTTTCCCAAAATTGCAGCCAGAACTGGTGCAGCATTTTACTGAACTTCGGTTGTTGCGTATCTACGAATGCCAAGTTTATGTTCTCTTC</genome_strand>
        <mrna_strand>CAATCGCTGGGCTCAAGGATTTATCCAGAGTTCAAACAGAAACAGGAAGTTGGAAGATATCGGTAATCAGTACTTTGATGAGTTGCTATCAAGGTTTTGCTTCCTAGATGTGATACAAGCAGCTTTTGATGGAGAAATATTGGCTTGTAAGATACACAATCTTGTGCATGATCTTGCACAGTCAGTATCAGGTGCAGAGTGCTTAAATGTGAAACCCAATGCTTTCGTGGTTTCTGAGAGAGTTCGCCACTTATTCTTCCATGCAGAAGATATGTCTAGGAAATACTTCCCCAGATTTTTGCTTCCTTTGCATAAGGTGAGGTCTTTTTTTTTATTCGTTTAATATTGGACCTGTAAACAAGTTTTTTGTCAAGACAATGTTGTCAAATTTCAAATGCCTTCGGATGTTAGTCTTGAACAATCTAGATCTTGAGGAGTTGCCAACTTCGATAGGTAACTTGAATGAATTAAGATACCTTAACCTTAGTGACAGTGGTAATATCAAGTTTATTCCAAGGTCTATGAGCAAATTAGTAAATTTGCACACCCTTAACCTCATTAACTGTGAACAGCTTAAGGAGTTGCCAAGAGACTTTAGAAAGTTAATCAGCCTGAAGACCTTGTATTTGACCACACATCAGATATTAGCAGGGATCAAGAATCAACATTCTTTCACTTCTCTTCAATTTTTGCTTCTTTTCGAATGTTGTTTCCCAAAATTGCAGCCAGAACTGGTGCAGCATTTTACTGAACTTCGGTTGTTGCGTATCTACGAATGCCAAGTTTATGTTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241243" ref_strand="+" ref_description="SGN-E241243 [cLED-26-I10]">
      <seq>atatcggtaatcagtactttgatgagttgctatcaaggttttgcttcctagatgtgatacaagcagcttttgatggagaaatattggcttgtaagatacacaatcttgtgcatgatcttgcacagtcagtatcaggtgcagagtgcttaaatgtgaaacccaatgctttcgtggtttctgagagagttcgccacttattcttccatgcagaagatatgtctaggaaatacttccccagatttttgcttcctttgcataaggtgaggtctttttttttattcgtttaatattggacctgtaaacaagttttttgtcaagacaatgttgtcaaatttcaaatgccttcggatgttagtcttgaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="+" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="110129" stop="111096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110429" g_stop="110796" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="+" ref_id="SGN-E241243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110429" e_stop="110796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCGGTAATCAGTACTTTGATGAGTTGCTATCAAGGTTTTGCTTCCTAGATGTGATACAAGCAGCTTTTGATGGAGAAATATTGGCTTGTAAGATACACAATCTTGTGCATGATCTTGCACAGTCAGTATCAGGTGCAGAGTGCTTAAATGTGAAACCCAATGCTTTCGTGGTTTCTGAGAGAGTTCGCCACTTATTCTTCCATGCAGAAGATATGTCTAGGAAATACTTCCCCAGATTTTTGCTTCCTTTGCATAAGGTGAGGTCTTTTTTTTTATTCGTTTAATATTGGACCTGTAAACAAGTTTTTTGTCAAGACAATGTTGTCAAATTTCAAATGCCTTCGGATGTTAGTCTTGAACAATCT</genome_strand>
        <mrna_strand>ATATCGGTAATCAGTACTTTGATGAGTTGCTATCAAGGTTTTGCTTCCTAGATGTGATACAAGCAGCTTTTGATGGAGAAATATTGGCTTGTAAGATACACAATCTTGTGCATGATCTTGCACAGTCAGTATCAGGTGCAGAGTGCTTAAATGTGAAACCCAATGCTTTCGTGGTTTCTGAGAGAGTTCGCCACTTATTCTTCCATGCAGAAGATATGTCTAGGAAATACTTCCCCAGATTTTTGCTTCCTTTGCATAAGGTGAGGTCTTTTTTTTTATTCGTTTAATATTGGACCTGTAAACAAGTTTTTTGTCAAGACAATGTTGTCAAATTTCAAATGCCTTCGGATGTTAGTCTTGAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="-" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="120380" stop="119480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120080" g_stop="119780" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="-" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120080" e_stop="119780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATTGATAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCACAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCAGGGCATGCTTGATCAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGATTGGTACATACGTCTGAAAACATT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="-" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="120805" stop="119721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120505" g_stop="120021" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="-" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120505" e_stop="120021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACGCTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTTCTTCCCGGCCACCCCCGAATCACCACCGCTCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACTAAATACACCCCTTCCCGATAGTGAACCAACAACCTAC-CTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAATTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGACTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGATTGATAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118B03-MJitQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118B03.1" temp_strand="-" temp_description="C04SLm0118B03.1  CU407318.19 htgs_phase:3 submitted_to_sgn_as:C04SLm0118B03 sequenced_by:sanger upload_account_name:uk">
        <position start="138944" stop="137687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138644" g_stop="137987" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118B03.1" gen_strand="-" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118B03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138644" e_stop="137987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAACCAGGTTCTCACTTATCTTAGCGGGTTATCTGATCGGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAGTAGGCACGTTTCCTCGATTGACTATAGGGTCTATAATGACGAGTGATCAGCATGAACTTTTCACTAAATTCTTAAAGCTGAAAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAACTGCTACATAAGATGGACATAGTGGAACGATTCGGTGTTGAGTTTGTGACCTACCAGTTTCAGGGGAATGCCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACCTGGGCATCATTCTCCAACTTATTTATGGAGAAATATATACCCTGGACTTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGCCTAAAGCAAGGAAGGATGTCTGTTGCTGTTTATGAGGCCAAATTTCGTGCGCTATCCAGGTATGCCACTCAGCTTTGCTTCAGTCCACAAGAGAGAATTCGCCGCTTTGTGAAAGTATTGAGGTCAGATTTGCAGATCCCAACCTTACAGGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTG--AAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>51</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10415" PGL_stop="2758"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10415" e_stop="10047"/>
            <exon e_start="3103" e_stop="2758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.924"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="10415" e_stop="10047" e_length="369"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10046" i_stop="3104" i_length="6943"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="3103" e_stop="2758" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10415" stop="10047"/>
              <exon start="3103" stop="2758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATCTTCGGTGGAGGTAGGTTATAGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGATAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAACATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATAAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAGTTGATAGAAAGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCATGAACCGACACGTAG : ATTAGGGGATCAGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTAGGGGATCGGAGTATCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGTGGAGTGTCACATACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGA</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  S  F  H  A  F  I  V  N  S  *  *  R  M  I  C  I  D  S  I  V  N  P  A  M  C  L  I  V  C  M  H  E  R  D  Y  I  I  V  I  I  L  N  M  M  K  L  L  N  P  K  S  *  *  K  P  N  L  F  L  M  M  M  P  W  *  G  R  R  L  D  K  L  K  *  *  D  *  *  C  L  G  K  G  E  G  L  M  S  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  *  T  D  T  *  :  I  R  G  S  G  V  T  N  *  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  Q  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  L  G  D  R  S  I  T  Y  R  H  K  R  I  N  E  Y  E  G  V  E  C  H  I  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  </first_frame>
            <second_frame>  N  L  R  W  R  *  V  I  V  F  M  L  S  *  *  T  L  N  R  E  *  Y  V  L  I  V  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  *  T  *  *  S  Y  *  I  P  N  L  D  K  N  L  I  S  F  *  *  *  C  L  G  K  G  E  G  L  I  N  *  S  N  E  I  D  D  A  L  V  R  E  K  A  *  *  V  D  R  K  R  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R :   L  G  D  Q  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  M  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  R  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  D  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  W  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  * </second_frame>
            <third_frame>   I  F  G  G  G  R  L  *  F  S  C  F  H  S  K  L  L  I  E  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  H  A  *  T  *  L  Y  N  C  D  Y  I  K  H  D  E  V  I  E  S  Q  I  L  I  K  T  *  S  L  F  N  D  D  A  L  V  R  E  K  A  *  *  T  K  V  M  R  L  M  M  P  W  *  G  R  R  L  D  E  L  I  E  R  D  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  M  N  R  H  V   : D  *  G  I  R  C  H  E  L  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  *  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  I  R  G  S  E  Y  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  H  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0118B03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3496" e_stop="2885"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="3496" e_stop="2885" e_length="612"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3496" stop="2885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAAGAAAATAGAAAGAACAAGAAGAGAGAGAGAGGGTCGATCGAGAAGGGGAAACACAAAGCTTTGGAGAAAATTTGCTTGCTTGATCACTAATCTTTGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGATAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTCTATTAAACATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATAAACTAAAGTAATGAGATTGATGATGTCTTGGTAAGGGAGAAGGCTTGATGAGTTGATAGAAAGAGATTAGGGGATCAGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTAGGGGAT</gDNA_template>
            <first_frame> N  K  E  N  R  K  N  K  K  R  E  R  G  S  I  E  K  G  K  H  K  A  L  E  K  I  C  L  L  D  H  *  S  L  V  E  V  G  Y  G  F  H  A  F  I  V  N  S  *  *  R  M  I  C  I  D  S  I  V  N  P  A  M  C  L  I  V  C  M  H  E  R  D  Y  I  I  V  I  L  L  N  M  M  K  L  L  N  P  K  S  *  *  K  P  N  L  F  L  M  M  M  P  W  *  G  R  R  L  D  K  L  K  *  *  D  *  *  C  L  G  K  G  E  G  L  M  S  *  *  K  E  I  R  G  S  G  V  T  N  *  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  Q  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  L  G  D </first_frame>
            <second_frame>  I  K  K  I  E  R  T  R  R  E  R  E  G  R  S  R  R  G  N  T  K  L  W  R  K  F  A  C  L  I  T  N  L  W  W  R  *  V  M  V  F  M  L  S  *  *  T  L  N  R  E  *  Y  V  L  I  V  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  F  Y  *  T  *  *  S  Y  *  I  P  N  L  D  K  N  L  I  S  F  *  *  *  C  L  G  K  G  E  G  L  I  N  *  S  N  E  I  D  D  V  L  V  R  E  K  A  *  *  V  D  R  K  R  L  G  D  Q  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  M  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  R  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  D  *  G   </second_frame>
            <third_frame>   *  R  K  *  K  E  Q  E  E  R  E  R  V  D  R  E  G  E  T  Q  S  F  G  E  N  L  L  A  *  S  L  I  F  G  G  G  R  L  W  F  S  C  F  H  S  K  L  L  I  E  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  H  A  *  T  *  L  Y  N  C  D  S  I  K  H  D  E  V  I  E  S  Q  I  L  I  K  T  *  S  L  F  N  D  D  A  L  V  R  E  K  A  *  *  T  K  V  M  R  L  M  M  S  W  *  G  R  R  L  D  E  L  I  E  R  D  *  G  I  R  C  H  E  L  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  *  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  I  R  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0118B03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6129" PGL_stop="6879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6129" e_stop="6879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="6129" e_stop="6879" e_length="751"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6129" stop="6841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6129" stop="6724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6129" stop="6654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6200" stop="6879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6200" stop="6558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAAGCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATATCATTCTCAAATGCTCCTCATGTTCTTTCTTGCTCTTTGAGTATATCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGTTTAAAAATCCCGTTCATCAAGCTCATGAACGCGGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTTGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAATTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAATCGGAGCACCCCAAGAAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAAGGGGTATAGAAATGGGGCGAGTA</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  K  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  F  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  F  K  N  P  V  H  Q  A  H  E  R  G  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  L  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  N  S  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  K  G  Y  R  N  G  A  S  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  S  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  N  F  F  S  L  N  I  S  N  I  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  I  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  V  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  *  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  L  I  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  I  G  A  P  Q  E  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  R  G  I  E  M  G  R  V </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  A  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  T  F  S  P  S  T  F  P  I  S  F  S  N  A  P  H  V  L  S  C  S  L  S  I  S  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  V  *  K  S  R  S  S  S  S  *  T  R  *  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  *  *  L  P  C  S  I  A  G  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  S  E  H  P  K  K  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6393" stop="6632"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWFKNPVHQAHERGRGIRKTKRHHYKFVMPIPRLKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6325" stop="6522"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFFSLNISNIILKCSSCSFLLFEYINISSINTITKRSKYGLKIPFIKLMNAVGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="7121" PGL_stop="8768"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7121" e_stop="8768"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="7121" e_stop="8768" e_length="1648"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7121" stop="7451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7332" stop="8095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7412" stop="8201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7414" stop="7947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7488" stop="8185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8049" stop="8768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8052" stop="8715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCGAGATCGCAAATTGTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCGGGATCAAACAATACAGAAGCTATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTACATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCATGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTTCTCCTAATATGTCCAGTCTCTCCACACCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTTTGAGGTGGACCCCCAACCACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGCCATGGTGAATTTATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTAGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACAACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCTGGGGGATATACTTCTCCATAAACAAACTAGAGAATAAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCATCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTTATGACAGTCAACTAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAATTTCATGCTGATCATTTGTCATGATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATATCTAATGAGGCATCAATACGAGGAGCCATAGTGGCTGCATGTTCTACCTCTGAAATCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGAGTGGCAATCCCTCATTCTGCACTTGTTCATTTTTCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCATTGCCCTAGTATCAGATGGGCT</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  V  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  R  D  Q  T  I  Q  K  L  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  L  S  V  H  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  L  D  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  P  L  G  V  Y  N  S  V  L  D  N  F  S  *  Y  V  Q  S  L  H  T  H  N  T  L  W  S  Q  A  *  V  S  Q  R  S  V  D  R  F  E  V  D  P  Q  P  Q  S  V  V  K  T  E  W  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  S  L  M  L  M  P  W  *  I  Y  L  A  S  L  L  P  P  L  P  R  N  L  P  L  L  R  R  I  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  N  E  S  A  L  V  D  *  N  K  V  E  W  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  I  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  Y  V  T  A  I  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  Y  D  S  Q  L  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  F  H  A  D  H  L  S  *  *  A  Q  *  S  D  V  E  T  C  L  Y  L  M  R  H  Q  Y  E  E  P  *  W  L  H  V  L  P  L  K  S  E  V  L  V  Q  K  T  L  E  V  P  D  L  D  Q  T  T  H  *  D  R  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  H  F  S  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  R  D  R  K  L  W  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  G  I  K  Q  Y  R  S  Y  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  C  L  Y  I  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  T  I  L  V  T  T  I  T  S  T  T  M  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  H  W  G  S  I  T  L  F  W  T  I  S  P  N  M  S  S  L  S  T  P  I  T  L  S  G  V  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  H  S  L  *  *  R  L  N  G  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  L  *  C  *  C  H  G  E  F  I  W  L  H  S  F  H  L  Y  H  E  I  Y  H  F  L  E  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  S  G  I  S  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  L  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  S  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  *  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  N  F  M  L  I  I  C  H  D  R  P  S  S  Q  T  W  K  R  A  Y  I  *  *  G  I  N  T  R  S  H  S  G  C  M  F  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  E  I  G  E  N  L  I  D  H  L  W  G  R  L  E  W  Q  S  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  E  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  T  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  C  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  M  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  A  M  V  N  L  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  *  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  Q  R  I  R  S  C  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  W  G  I  Y  F  S  I  N  K  L  E  N  K  A  Q  V  I  G  G  A  S  V  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  L  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  I  S  C  *  S  F  V  M  I  G  P  V  V  R  R  G  N  V  P  I  S  N  E  A  S  I  R  G  A  I  V  A  A  C  S  T  S  E  I  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  S  G  N  P  S  F  C  T  C  S  F  F  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  I  A  L  V  S  D  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7560" stop="7814"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSTILVTTITSTTMSSRITASTMTTSTSSHWGSITLFWTISPNMSSLSTPITLSGVKHRSLREVLTGLRWTPNHSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8562" stop="8768"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRCLTLIRQPTEIGENLIDHLWGRLEWQSLILHLFIFPILPFSYYFLSRWRSHCPSIRWA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="9598" PGL_stop="9934"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9598" e_stop="9934"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="9598" e_stop="9934" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9598" stop="9934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATACCAAGTAATATCATAAAATAACCTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTTACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTCTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCTCCTAAATCTACATGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  T  I  Y  T  K  *  Y  H  K  I  T  Y  D  T  Q  H  V  A  T  T  S  T  I  S  F  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  L  L  N  L  H  V  G  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  K  Q  Y  I  P  S  N  I  I  K  *  P  M  I  L  N  M  *  Q  Q  Q  A  L  Y  H  L  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  S  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  S  *  I  Y  M  S  V  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  N  N  I  Y  Q  V  I  S  *  N  N  L  *  Y  S  T  C  S  N  N  K  H  Y  I  I  Y  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  L  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  C  R  F  V  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0118B03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="19833" PGL_stop="20314"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19833" e_stop="20314"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="19833" e_stop="20314" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19833" stop="20070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19834" stop="20314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGTTCCGACACATAGTGGTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCAACACAAGTGGAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATCGTATGGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAAATGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGAATTTTATGATATTACTTGGTATATATTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCCAGTCTTCGTCACATCGGATCTTTGGGGTGAGCTAATGTTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  S  D  T  *  W  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  Q  H  K  W  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  R  M  E  A  *  V  L  M  C  E  L  D  G  K  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  E  F  Y  D  I  T  W  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  I  V  F  F  L  F  N  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  S  H  R  I  F  G  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  H  V  P  T  H  S  G  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  N  T  S  G  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  I  V  W  R  L  E  S  S  C  V  N  L  T  V  N  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  N  F  M  I  L  L  G  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  L  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  R  H  I  G  S  L  G  *  A  N  V  S  S  L  D  </second_frame>
            <third_frame>   T  F  R  H  I  V  V  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  V  E  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  K  *  V  S  Y  G  G  L  S  P  H  V  *  T  *  R  *  M  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  I  L  *  Y  Y  L  V  Y  I  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  C  F  L  L  V  *  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  V  T  S  D  L  W  G  E  L  M  F  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20055" stop="20297"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSTCCCYMLSIIVEFYDITWYILFSILSWPMISTQYPCFVLTPTFIVFFLFNCGVQQTCRHLRLNSNSSQSSSHRIFGVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="25133" PGL_stop="49154"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25133" e_stop="25522"/>
            <exon e_start="49040" e_stop="49154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.931"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="25133" e_stop="25522" e_length="390"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25523" i_stop="49039" i_length="23517"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="49040" e_stop="49154" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25133" stop="25522"/>
              <exon start="49040" stop="49154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTTGTGACGGAATGGCAGGACTGACCGTCACAGGTGTGACGGACCGTCACAGACCCTTGGTGGAAATATTGGGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTGGGACTATTCTTTCCTTAATTATAAATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATATTAATTAGGGTAAAAGAAAAAGG : GTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTCGCCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAG</gDNA_template>
            <first_frame> K  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  *  T  L  *  R  N  G  R  T  D  R  H  R  C  D  G  P  S  Q  T  L  G  G  N  I  G  S  L  N  L  A  T  T  C  R  T  D  R  R  R  H  D  G  P  S  Q  V  A  Q  I  P  G  R  I  G  F  P  Y  T  F  *  G  T  F  W  D  Y  S  F  L  N  Y  K  F  R  G  F  I  L  I  T  Q  I  L  G  G  *  K  R  *  P  *  V  N  *  W  G  I  I  A  I  F  Y  S  *  L  Y  I  N  *  G  K  R  K  R  :  V  L  K  R  D  P  A  T  V  R  R  A  H  D  G  P  S  W  G  P  S  P  Q  P  V  F  P  E  I  K  S  A  A  Q  N  D  *  T  </first_frame>
            <second_frame>  K  H  L  E  N  L  K  L  G  T  E  N  R  L  S  E  L  C  D  G  M  A  G  L  T  V  T  G  V  T  D  R  H  R  P  L  V  E  I  L  G  L  *  T  L  R  R  P  A  G  R  T  V  A  G  T  T  A  R  H  R  L  R  K  S  Q  A  E  S  D  F  L  T  R  F  K  G  R  F  G  T  I  L  S  L  I  I  N  F  V  G  L  Y  *  *  L  K  F  L  G  V  K  R  G  N  P  K  L  I  S  G  V  L  L  P  S  F  I  L  N  Y  I  L  I  R  V  K  E  K  G :   F  *  N  E  T  L  R  R  S  V  V  P  M  T  V  R  R  G  V  R  R  L  S  L  F  F  Q  K  *  N  L  L  L  K  T  T  K  Q </second_frame>
            <third_frame>   N  T  *  K  I  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  *  P  S  Q  V  *  R  T  V  T  D  P  W  W  K  Y  W  V  S  E  P  C  D  D  L  Q  D  G  P  S  Q  A  R  R  P  V  T  G  C  A  N  P  R  Q  N  R  I  S  L  H  V  L  R  D  V  L  G  L  F  F  P  *  L  *  I  S  W  V  Y  I  N  N  S  N  S  W  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  C  H  L  L  F  L  I  I  Y  *  L  G  *  K  K  K   : G  F  E  T  R  P  C  D  G  P  S  C  P  *  R  S  V  V  G  S  V  A  S  A  C  F  S  R  N  K  I  C  C  S  K  R  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0118B03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="33423" PGL_stop="32655"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33423" e_stop="32655"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="33423" e_stop="32655" e_length="769"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33423" stop="32655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33422" stop="32932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323523" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGTTTCCTCTCTACTTTTCATTTCTCTTTTAGCTTAGTTGTCAGGTCATTCCTCTCGTTTGGTTTGTCCTCAGTGCGTTAAGATCTTGTTGGGTCTATGTGAGATGTTATTCTCTTTATTCTTCCACCACTAGTTGGGGCTAAACATCGATTCTCGAGTTTATTTGATGGCCTTATATCTGAATGTCTTATAGCTGAGCTTGTAGTCTACTGTCTTGCATCAACTCTTAGAACATTTATTTGGTTCTTGATACCCTTCTTTTCCTTTCATGTCTTGTACAGTTTGGTCTGGATGCCTTTTTTTTTTATCCCGTAACTTGCTAGGAGTGAATTTTGAAAAGTCTGCTGATTAACTCGTTCATCTGTTTTAGGGGAAAAAAAAAGATTAATATATGTTTTCGTCTTGTTAGTTAATTTATCTTTCGCATGTGTGGTAGGATAGGCTGCTTGAACTTTACGTGAAAATTGGCTTGTTTAATCTTTTGTCGTTTGCCCCGTGGTCTTCTATGGCATTTCTTGTTTAATGCGAATGAAATTTGGGTAGTTTATTAGATTTTATACCCTCTGTCTGCTGAAAAGTTGAATTAGGCGAGCATAATTTACATTCCGTTCGTTAATATACTCATTTTGAACGAGGGGAATGTCAATAATTAAGTTGCTTTTATTTTTCTACCTTGATTACTGTGGTGTTGCTTTACTAATTTTATTTTATTTTCTCATGTCAACTTATCCGAGTCCATTATGGACTCTCACCTCCTCTTTGCAATT</gDNA_template>
            <first_frame> V  V  S  S  L  L  F  I  S  L  L  A  *  L  S  G  H  S  S  R  L  V  C  P  Q  C  V  K  I  L  L  G  L  C  E  M  L  F  S  L  F  F  H  H  *  L  G  L  N  I  D  S  R  V  Y  L  M  A  L  Y  L  N  V  L  *  L  S  L  *  S  T  V  L  H  Q  L  L  E  H  L  F  G  S  *  Y  P  S  F  P  F  M  S  C  T  V  W  S  G  C  L  F  F  L  S  R  N  L  L  G  V  N  F  E  K  S  A  D  *  L  V  H  L  F  *  G  K  K  K  D  *  Y  M  F  S  S  C  *  L  I  Y  L  S  H  V  W  *  D  R  L  L  E  L  Y  V  K  I  G  L  F  N  L  L  S  F  A  P  W  S  S  M  A  F  L  V  *  C  E  *  N  L  G  S  L  L  D  F  I  P  S  V  C  *  K  V  E  L  G  E  H  N  L  H  S  V  R  *  Y  T  H  F  E  R  G  E  C  Q  *  L  S  C  F  Y  F  S  T  L  I  T  V  V  L  L  Y  *  F  Y  F  I  F  S  C  Q  L  I  R  V  H  Y  G  L  S  P  P  L  C  N  </first_frame>
            <second_frame>  L  F  P  L  Y  F  S  F  L  F  *  L  S  C  Q  V  I  P  L  V  W  F  V  L  S  A  L  R  S  C  W  V  Y  V  R  C  Y  S  L  Y  S  S  T  T  S  W  G  *  T  S  I  L  E  F  I  *  W  P  Y  I  *  M  S  Y  S  *  A  C  S  L  L  S  C  I  N  S  *  N  I  Y  L  V  L  D  T  L  L  F  L  S  C  L  V  Q  F  G  L  D  A  F  F  F  Y  P  V  T  C  *  E  *  I  L  K  S  L  L  I  N  S  F  I  C  F  R  G  K  K  K  I  N  I  C  F  R  L  V  S  *  F  I  F  R  M  C  G  R  I  G  C  L  N  F  T  *  K  L  A  C  L  I  F  C  R  L  P  R  G  L  L  W  H  F  L  F  N  A  N  E  I  W  V  V  Y  *  I  L  Y  P  L  S  A  E  K  L  N  *  A  S  I  I  Y  I  P  F  V  N  I  L  I  L  N  E  G  N  V  N  N  *  V  A  F  I  F  L  P  *  L  L  W  C  C  F  T  N  F  I  L  F  S  H  V  N  L  S  E  S  I  M  D  S  H  L  L  F  A  I </second_frame>
            <third_frame>   C  F  L  S  T  F  H  F  S  F  S  L  V  V  R  S  F  L  S  F  G  L  S  S  V  R  *  D  L  V  G  S  M  *  D  V  I  L  F  I  L  P  P  L  V  G  A  K  H  R  F  S  S  L  F  D  G  L  I  S  E  C  L  I  A  E  L  V  V  Y  C  L  A  S  T  L  R  T  F  I  W  F  L  I  P  F  F  S  F  H  V  L  Y  S  L  V  W  M  P  F  F  F  I  P  *  L  A  R  S  E  F  *  K  V  C  *  L  T  R  S  S  V  L  G  E  K  K  R  L  I  Y  V  F  V  L  L  V  N  L  S  F  A  C  V  V  G  *  A  A  *  T  L  R  E  N  W  L  V  *  S  F  V  V  C  P  V  V  F  Y  G  I  S  C  L  M  R  M  K  F  G  *  F  I  R  F  Y  T  L  C  L  L  K  S  *  I  R  R  A  *  F  T  F  R  S  L  I  Y  S  F  *  T  R  G  M  S  I  I  K  L  L  L  F  F  Y  L  D  Y  C  G  V  A  L  L  I  L  F  Y  F  L  M  S  T  Y  P  S  P  L  W  T  L  T  S  S  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33319" stop="33107"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVILFILPPLVGAKHRFSSLFDGLISECLIAELVVYCLASTLRTFIWFLIPFFSFHVLYSLVWMPFFFIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="34841" PGL_stop="34140"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34841" e_stop="34140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="34841" e_stop="34140" e_length="702"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34841" stop="34140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708366" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTTCGACAGTTCAAGAGGCATGTACAAATCTCAAGCAGCGGCGAATTGACAGAGATACATGGAGTTTCCTTTCCAACTCATGGCAGGTCACGCCTTGTGCGCACACTACATAGACAGCTTTTCCTTTGTCGTATATCTCCAACGTCCCTTCCGATCGGTATGAATTTGAAAATGGCAGAAAGGCTCACGCGAAACCGTCCTTGATAGTTTAAGATCAAGCCACAAAGCTCCCCAAGGACGGGAGATCGATCTGAGGCTTTCATTCTCCCCTTTCTTTTTGGAAAAGGCGGAAGGTTCAGAAAACAGACTGTTCAGCCAAAATTGGTGATTCTTTTTTTTTTTTTGAATTTTGAATGAAGGAACTCGAAATGGGTCTGTTTTGGACCCATATCCACCCCACCTTTCAAGAATTTGAAACCCTAATTTTACACTATATATAGTCTCTTCATTCTCTGAGATAAGAGATTTTTTTTGAGCCATAAGACACATAAACCTAAAAAAGGGACGGAGTGGCAGTGAATTAAGAAAATATAGAGAAAGAATTTAAAGAAAAAGAACATTCTTAGAGTCAACTAGTGTCAGGGAGAAGCAAAATATACAAAAGAGGTTGAGGATCTCGTTCCTTGCCTAGCTTCGGTGTTGTTTATTTTGGTTCGTTACCAACCTTTTCAAAGTCGCGTTCCTAGTGGTGTTAAGGTTTC</gDNA_template>
            <first_frame> R  S  T  V  Q  E  A  C  T  N  L  K  Q  R  R  I  D  R  D  T  W  S  F  L  S  N  S  W  Q  V  T  P  C  A  H  T  T  *  T  A  F  P  L  S  Y  I  S  N  V  P  S  D  R  Y  E  F  E  N  G  R  K  A  H  A  K  P  S  L  I  V  *  D  Q  A  T  K  L  P  K  D  G  R  S  I  *  G  F  H  S  P  L  S  F  W  K  R  R  K  V  Q  K  T  D  C  S  A  K  I  G  D  S  F  F  F  F  E  F  *  M  K  E  L  E  M  G  L  F  W  T  H  I  H  P  T  F  Q  E  F  E  T  L  I  L  H  Y  I  *  S  L  H  S  L  R  *  E  I  F  F  E  P  *  D  T  *  T  *  K  R  D  G  V  A  V  N  *  E  N  I  E  K  E  F  K  E  K  E  H  S  *  S  Q  L  V  S  G  R  S  K  I  Y  K  R  G  *  G  S  R  S  L  P  S  F  G  V  V  Y  F  G  S  L  P  T  F  S  K  S  R  S  *  W  C  *  G  F </first_frame>
            <second_frame>  V  R  Q  F  K  R  H  V  Q  I  S  S  S  G  E  L  T  E  I  H  G  V  S  F  P  T  H  G  R  S  R  L  V  R  T  L  H  R  Q  L  F  L  C  R  I  S  P  T  S  L  P  I  G  M  N  L  K  M  A  E  R  L  T  R  N  R  P  *  *  F  K  I  K  P  Q  S  S  P  R  T  G  D  R  S  E  A  F  I  L  P  F  L  F  G  K  G  G  R  F  R  K  Q  T  V  Q  P  K  L  V  I  L  F  F  F  L  N  F  E  *  R  N  S  K  W  V  C  F  G  P  I  S  T  P  P  F  K  N  L  K  P  *  F  Y  T  I  Y  S  L  F  I  L  *  D  K  R  F  F  L  S  H  K  T  H  K  P  K  K  G  T  E  W  Q  *  I  K  K  I  *  R  K  N  L  K  K  K  N  I  L  R  V  N  *  C  Q  G  E  A  K  Y  T  K  E  V  E  D  L  V  P  C  L  A  S  V  L  F  I  L  V  R  Y  Q  P  F  Q  S  R  V  P  S  G  V  K  V   </second_frame>
            <third_frame>   F  D  S  S  R  G  M  Y  K  S  Q  A  A  A  N  *  Q  R  Y  M  E  F  P  F  Q  L  M  A  G  H  A  L  C  A  H  Y  I  D  S  F  S  F  V  V  Y  L  Q  R  P  F  R  S  V  *  I  *  K  W  Q  K  G  S  R  E  T  V  L  D  S  L  R  S  S  H  K  A  P  Q  G  R  E  I  D  L  R  L  S  F  S  P  F  F  L  E  K  A  E  G  S  E  N  R  L  F  S  Q  N  W  *  F  F  F  F  F  *  I  L  N  E  G  T  R  N  G  S  V  L  D  P  Y  P  P  H  L  S  R  I  *  N  P  N  F  T  L  Y  I  V  S  S  F  S  E  I  R  D  F  F  *  A  I  R  H  I  N  L  K  K  G  R  S  G  S  E  L  R  K  Y  R  E  R  I  *  R  K  R  T  F  L  E  S  T  S  V  R  E  K  Q  N  I  Q  K  R  L  R  I  S  F  L  A  *  L  R  C  C  L  F  W  F  V  T  N  L  F  K  V  A  F  L  V  V  L  R  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34840" stop="34637"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRQFKRHVQISSSGELTEIHGVSFPTHGRSRLVRTLHRQLFLCRISPTSLPIGMNLKMAERLTRNRP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="49821" PGL_stop="49997"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49821" e_stop="49997"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="49821" e_stop="49997" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49821" stop="49997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTCGAGTGATAGCTATTATTGTATAAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATCACGCACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCA</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  K  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  S  S  D  S  Y  Y  C  I  K  I  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  R  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  R  V  I  A  I  I  V  *  K  F  R  *  G  *  E  A  I  P  M  A  T  K  F  Y  H  A  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0118B03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="51372" PGL_stop="51730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51372" e_stop="51730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="51372" e_stop="51730" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51372" stop="51730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTACGCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAAAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTACAATACCATTCTCAAATGCTCTTCATGTCCCTTCTTGTTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCTGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</gDNA_template>
            <first_frame> V  L  R  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  K  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  T  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  C  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A   </first_frame>
            <second_frame>  S  Y  A  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  K  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  L  Q  Y  H  S  Q  M  L  F  M  S  L  L  V  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  </second_frame>
            <third_frame>   L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  Y  N  T  I  L  K  C  S  S  C  P  F  L  F  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  L  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51497" stop="51694"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNIYNTILKCSSCPFLFFEYTNISSINTITKRSKYGLKILFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="51821" PGL_stop="53057"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51821" e_stop="53057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="51821" e_stop="53057" e_length="1237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51821" stop="52479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51890" stop="52651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51890" stop="52550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52117" stop="52659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52500" stop="53057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACTTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAGCTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATCGAAATAGGGCGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCAGACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATGGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATTATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATATCAAGTAATTCACAATGTAAGTTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATAAAGAAGCCATGCAATCACAAACCAGCAGATTACATGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTATTTTAGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGAGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</gDNA_template>
            <first_frame> S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  S  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  I  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  R  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  G  G  E  S  Q  V  I  P  R  I  T  S  K  L  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  *  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  K  E  A  M  Q  S  Q  T  S  R  L  H  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  L  Y  H  D  H  L  Y  L  *  P  L  G  V  Y  N  S  I  L  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  W  S  Q  A  *  V  S  Q  R  R  V  D  Q  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  </first_frame>
            <second_frame>  Q  C  G  E  E  D  T  C  S  L  W  L  L  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  T  A  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  S  K  *  G  E  Y  P  V  Q  G  Q  Y  R  N  Q  Y  P  Y  L  V  A  D  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  M  A  E  K  A  K  S  Y  P  E  L  H  Q  N  Y  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  S  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  K  K  P  C  N  H  K  P  A  D  Y  M  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  L  S  V  H  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  L  D  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  A  S  T  M  T  T  S  T  S  S  H  W  G  S  I  T  L  F  *  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  G  V  K  H  R  S  L  R  E  E  L  T  S  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T </second_frame>
            <third_frame>   N  A  G  K  R  I  L  V  L  Y  G  Y  F  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  *  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  R  A  S  T  R  F  K  V  N  T  E  I  N  I  P  I  W  W  Q  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  W  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  M  N  R  H  I  K  *  F  T  M  *  V  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  *  R  S  H  A  I  T  N  Q  Q  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  C  L  S  I  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  T  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  Y  F  R  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  S  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52028" stop="52273"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEIGRVPGSRSIQKSISLSGGRPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52006" stop="52206"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNRASTRFKVNTEINIPIWWQTRKICREHIQKLTDHRNRLNRRYLGSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="53316" PGL_stop="51873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53316" e_stop="53130"/>
            <exon e_start="52386" e_stop="51873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.925"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="53316" e_stop="53130" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53129" i_stop="52387" i_length="743"/>
          </intron>
          <exon e_serial="2" e_score="0.912">
            <gDNA_exon_boundary e_start="52386" e_stop="51873" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53316" stop="53130"/>
              <exon start="52386" stop="51873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGAAGGATGTCGGCCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTTAGTCCACAAGAGCAGATTCGTCATTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTC : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGCCATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTCTGCCACCAGATAGGGATATTGATTTCTGTATTGACCTTGAACCGGGTACTCGCCCTATTTCGATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGCTGTTAAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  K  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  P  T  L  F  *  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R  S  G  R  F   : R  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  S  A  T  R  *  G  Y  *  F  L  Y  *  P  *  T  G  Y  S  P  Y  F  D  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  A  V  K  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  A  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  Q  I  R  H  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  P  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  L  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  E  G  C  R  P  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  P  N  F  V  L  V  H  K  S  R  F  V  I  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  S  K  K  W  *  I  S :   M  *  F  W  V  *  L  G  F  L  R  H  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  I  S  V  L  T  L  N  R  V  L  A  L  F  R  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53315" stop="53130"/>
                    <exon start="52386" stop="51874"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSANAYEAKFRALSRYATQLCFSPQEQIRHFVKGLRSELRISALQVAATAKSFQEVVDFDVILGMTWLSPPFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGLPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="54719" PGL_stop="54017"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54719" e_stop="54017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="54719" e_stop="54017" e_length="703"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54719" stop="54017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTGCTACATCGGAAATTTAGGGTGAGCTAATGCTTCTTGCTTAGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTCTTAGAATACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTTTATTTAATGTCTTCCGCATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTAGATTGGTTGGTTCGCTTACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTGGGCCGTGACAAACTTGGTATCAGCGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTGGAGCAACGACTACGCCAACACCAACACCAGCACCAGCGGGACAGGGTGCGTCTGAGCCAGCTACTGGGGCTGTAG</gDNA_template>
            <first_frame> Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  C  Y  I  G  N  L  G  *  A  N  A  S  C  L  D  W  I  F  F  F  K  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  S  *  N  T  L  S  L  V  I  *  S  *  M  F  L  *  *  *  L  P  D  F  G  N  N  R  C  *  I  L  E  V  N  E  L  V  F  I  *  C  L  P  H  Y  F  L  L  I  L  Y  *  N  V  K  V  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  Q  P  G  L  G  R  D  K  L  G  I  S  A  L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  P  F  F  L  S  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  G  A  T  T  T  P  T  P  T  P  A  P  A  G  Q  G  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  S  K  R  A  I  V  F  N  S  T  V  I  Q  A  S  L  A  T  S  E  I  *  G  E  L  M  L  L  A  *  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  L  R  I  L  L  V  *  S  F  D  R  R  C  S  C  D  D  D  F  Q  I  L  G  I  I  D  V  E  F  *  K  L  M  N  W  S  L  F  N  V  F  R  I  T  F  C  *  Y  Y  I  E  M  L  R  L  D  W  L  V  R  L  H  R  R  V  S  V  G  A  S  R  N  P  V  W  A  V  T  N  L  V  S  A  H  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  H  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  Q  H  Q  R  D  R  V  R  L  S  Q  L  L  G  L  * </second_frame>
            <third_frame>   A  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  L  L  R  L  D  L  L  L  Q  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  E  Y  S  *  F  S  H  L  I  V  D  V  L  V  M  M  T  S  R  F  W  E  *  *  M  L  N  F  R  S  *  *  I  G  L  Y  L  M  S  S  A  L  L  S  V  D  I  I  L  K  C  *  G  *  I  G  W  F  A  Y  I  G  G  *  V  W  V  P  V  A  T  R  F  G  P  *  Q  T  W  Y  Q  R  I  R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  F  R  A  I  T  W  V  Q  L  V  S  R  *  Y  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  W  S  N  D  Y  A  N  T  N  T  S  T  S  G  T  G  C  V  *  A  S  Y  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54212" stop="54018"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFRKIPFFLSSFVLLLGSNWYLGDTLVSDHLHSISQMVRTGATTTPTPTPAPAGQGASEPATGAV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="55105" PGL_stop="54867"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55105" e_stop="54867"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="55105" e_stop="54867" e_length="239"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55105" stop="54867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGAAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACGCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  I  E  E  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  R  N  L  M  N  M  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L   </first_frame>
            <second_frame>  H  E  P  T  H  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  L  R  K  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  A  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  I  C  C  </second_frame>
            <third_frame>   T  N  R  H  I  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  F  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0118B03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="79497" PGL_stop="73308"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79497" e_stop="78960"/>
            <exon e_start="73746" e_stop="73308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.898"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.898">
            <gDNA_exon_boundary e_start="79497" e_stop="78960" e_length="538"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78959" i_stop="73747" i_length="5213"/>
          </intron>
          <exon e_serial="2" e_score="0.923">
            <gDNA_exon_boundary e_start="73746" e_stop="73308" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79497" stop="78960"/>
              <exon start="73746" stop="73625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73709" stop="73308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAACTGGCAGAAATAACGGACCCCACGACGGACCATCATGGGCACGACGGACCGTCGCGGGGTCTCGTTTCAATACACTTAGAAAAACTGAAAATTGGGTACTGAAATCGACTCTCTGAACTTCGTAACGGAATGGCAAGACGGACCGTCACAGGTGTGACGGACCGTCACAGATTCTTCAGAGAAATTGAGTCTCTGAACTCTGTGACGGGCAGTAGGACGGACCGTCGCAGGCGCGACGGGCCGTCACAGACTGCGAAATCTCAGTCTGGGTCGGATTTCTTGATACGTTTTAAGGGACGTTTTTGACTATTCTTTCCTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGACATTATTGCCATCTTTTATTCTTAATTATATGTTAATTAGGGTAAAAGAAAGAGGGTTTTGAATAAAGAAAATAGAAAGAACAAGAGAAAGAGAGAGAGAGTCGAACGAGAAAGAGGAGAAACGAAGAGAAA : AAAACACAAAGCTTTGGGAATTTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAACCCTAATCCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAATCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACG</gDNA_template>
            <first_frame> E  K  L  A  E  I  T  D  P  T  T  D  H  H  G  H  D  G  P  S  R  G  L  V  S  I  H  L  E  K  L  K  I  G  Y  *  N  R  L  S  E  L  R  N  G  M  A  R  R  T  V  T  G  V  T  D  R  H  R  F  F  R  E  I  E  S  L  N  S  V  T  G  S  R  T  D  R  R  R  R  D  G  P  S  Q  T  A  K  S  Q  S  G  S  D  F  L  I  R  F  K  G  R  F  *  L  F  F  P  *  L  *  S  *  W  V  N  V  N  K  S  N  Y  L  G  V  K  R  G  N  L  K  L  I  S  G  T  L  L  P  S  F  I  L  N  Y  M  L  I  R  V  K  E  R  G  F  *  I  K  K  I  E  R  T  R  E  R  E  R  E  S  N  E  K  E  E  K  R  R  E   : K  N  T  K  L  W  E  F  A  C  L  I  T  N  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  S  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  P  *  S  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  I  D  T  *  I  *  G  I  G  C  H  E  P  T   </first_frame>
            <second_frame>  K  N  W  Q  K  *  R  T  P  R  R  T  I  M  G  T  T  D  R  R  G  V  S  F  Q  Y  T  *  K  N  *  K  L  G  T  E  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  V  *  R  T  V  T  D  S  S  E  K  L  S  L  *  T  L  *  R  A  V  G  R  T  V  A  G  A  T  G  R  H  R  L  R  N  L  S  L  G  R  I  S  *  Y  V  L  R  D  V  F  D  Y  S  F  L  N  Y  K  V  S  G  L  M  L  I  S  L  I  T  W  G  L  K  E  V  T  L  S  *  L  V  G  H  Y  C  H  L  L  F  L  I  I  C  *  L  G  *  K  K  E  G  F  E  *  R  K  *  K  E  Q  E  K  E  R  E  S  R  T  R  K  R  R  N  E  E  K  :  K  T  Q  S  F  G  N  L  L  A  *  S  L  I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  V  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  N  P  N  P  L  L  M  M  R  P  W  Y  K  R  R  R  D  E  L  N  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  S  T  R  R  F  R  G  S  G  V  T  N  R  H  </second_frame>
            <third_frame>   K  T  G  R  N  N  G  P  H  D  G  P  S  W  A  R  R  T  V  A  G  S  R  F  N  T  L  R  K  T  E  N  W  V  L  K  S  T  L  *  T  S  *  R  N  G  K  T  D  R  H  R  C  D  G  P  S  Q  I  L  Q  R  N  *  V  S  E  L  C  D  G  Q  *  D  G  P  S  Q  A  R  R  A  V  T  D  C  E  I  S  V  W  V  G  F  L  D  T  F  *  G  T  F  L  T  I  L  S  L  I  I  K  L  V  G  *  C  *  *  V  *  L  L  G  G  *  K  R  *  P  *  V  N  *  W  D  I  I  A  I  F  Y  S  *  L  Y  V  N  *  G  K  R  K  R  V  L  N  K  E  N  R  K  N  K  R  K  R  E  R  V  E  R  E  R  G  E  T  K  R  K :   K  H  K  A  L  G  I  C  L  L  D  H  *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  T  L  I  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  I  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79389" stop="79186"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRLSELRNGMARRTVTGVTDRHRFFREIESLNSVTGSRTDRRRRDGPSQTAKSQSGSDFLIRFKGRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78398" e_stop="77920"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="78398" e_stop="77920" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78398" stop="77920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACGAACCGACACATAGATTTAGGGGATCGGAGTGTCAAGTTCACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACATACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTTTGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTAACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAACAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> H  E  P  T  H  R  F  R  G  S  E  C  Q  V  H  T  R  G  L  M  N  I  E  G  A  E  C  H  I  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  R  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  F  D  I  T  W  Y  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  S  L  L  V  Y  L  W  S  A  T  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  T  N  R  H  I  D  L  G  D  R  S  V  K  F  T  Q  E  D  *  *  I  L  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  I  C  C  C  Y  M  L  S  I  I  V  D  F  L  I  L  L  G  I  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  N  P  Y  F  Y  V  L  F  L  F  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   R  T  D  T  *  I  *  G  I  G  V  S  S  S  H  K  R  I  N  E  Y  *  G  S  G  V  S  H  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  S  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  F  V  V  A  T  C  *  V  S  *  L  I  F  *  Y  Y  L  V  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  N  K  R  A  I  V  F  N  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78178" stop="77942"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSICCCYMLSIIVDFLILLGIYIDFYFELADDIYSVPVFCTNPYFYVLFLFICGVQQTCHRLQLNSNSSQSYYIGNSG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78129" stop="77920"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYLVYILISILSWPMISTQYPCFVLTPTFMFSSCLFVECNKRAIVFNSTVIQASLTTSEIQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="80200" PGL_stop="80376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80200" e_stop="80376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="80200" e_stop="80376" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80200" stop="80376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGTCATATCAATGCTCGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATCACGCACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCA</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  V  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  S  Y  Q  C  S  S  D  S  Y  Y  C  M  K  I  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  R  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  R  V  I  A  I  I  V  *  K  F  R  *  G  *  E  A  I  P  M  A  T  K  F  Y  H  A  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0118B03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="90308" PGL_stop="91037"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90308" e_stop="90564"/>
            <exon e_start="90736" e_stop="91037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.918"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="90308" e_stop="90564" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90565" i_stop="90735" i_length="171"/>
          </intron>
          <exon e_serial="2" e_score="0.927">
            <gDNA_exon_boundary e_start="90736" e_stop="91037" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90308" stop="90564"/>
              <exon start="90736" stop="91037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90308" stop="90564"/>
              <exon start="90736" stop="91037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689001" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACTCTACTGTCAGCGAATCAATCCAAAACAGGAAAGTACACGAAGAAATATGTGTTTTTAAGAAGAAGGAAGATCAGAAAATTCGTTAGAAAATATTCTGAAGACTGAATGGTATTTATAGGAAAGAATAATATATTCTGAAATGTTGCAACCCTTTCAAAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGAAATTTTT : AAAATTATCTCTCGATCGATCATTTGCCAAAGCTAAAGCCAAAGACAAAGCCGAAGCCGAAGCGAGTGAGCGACGACGACGACGGCACGAGGGGGGTCCCTCTTTCCAACCCTTTTAACAATTAAAAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCGATGAGGGACTATTGCCTTTTTCATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCATTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</gDNA_template>
            <first_frame> T  L  Y  C  Q  R  I  N  P  K  Q  E  S  T  R  R  N  M  C  F  *  E  E  G  R  S  E  N  S  L  E  N  I  L  K  T  E  W  Y  L  *  E  R  I  I  Y  S  E  M  L  Q  P  F  Q  N  *  H  D  H  *  *  K  V  A  N  F  Q  M  V  L  T  V  P  E  S  C  N  L  S  E  Q  W  R  K  F  L :   K  L  S  L  D  R  S  F  A  K  A  K  A  K  D  K  A  E  A  E  A  S  E  R  R  R  R  R  H  E  G  G  P  S  F  Q  P  F  *  Q  L  K  G  V  F  I  Y  L  N  S  P  I  F  I  S  I  T  D  E  G  L  L  P  F  S  L  K  H  *  R  T  F  Q  V  P  N  L  S  S  S  K  L  F  K  F  L  S  F  P  L  F  P  I  N  S  C  Y  I  P  N  </first_frame>
            <second_frame>  H  S  T  V  S  E  S  I  Q  N  R  K  V  H  E  E  I  C  V  F  K  K  K  E  D  Q  K  I  R  *  K  I  F  *  R  L  N  G  I  Y  R  K  E  *  Y  I  L  K  C  C  N  P  F  K  I  D  T  T  I  N  E  R  L  Q  T  F  K  W  Y  *  L  F  L  K  V  A  T  F  Q  N  S  G  G  N  F   : *  N  Y  L  S  I  D  H  L  P  K  L  K  P  K  T  K  P  K  P  K  R  V  S  D  D  D  D  G  T  R  G  V  P  L  S  N  P  F  N  N  *  K  E  C  L  F  I  *  T  L  L  F  S  F  P  L  P  M  R  D  Y  C  L  F  H  *  S  I  R  G  L  F  K  F  P  T  F  Q  V  L  N  F  S  N  S  S  H  S  L  Y  F  P  S  I  L  A  T  Y  P  T </second_frame>
            <third_frame>   T  L  L  S  A  N  Q  S  K  T  G  K  Y  T  K  K  Y  V  F  L  R  R  R  K  I  R  K  F  V  R  K  Y  S  E  D  *  M  V  F  I  G  K  N  N  I  F  *  N  V  A  T  L  S  K  L  T  R  P  L  M  K  G  C  K  L  S  N  G  I  D  C  S  *  K  L  Q  P  F  R  T  V  A  E  I  F  :  K  I  I  S  R  S  I  I  C  Q  S  *  S  Q  R  Q  S  R  S  R  S  E  *  A  T  T  T  T  A  R  G  G  S  L  F  P  T  L  L  T  I  K  R  S  V  Y  L  F  K  L  S  Y  F  H  F  H  Y  R  *  G  T  I  A  F  F  I  K  A  L  E  D  F  S  S  S  Q  P  F  K  F  *  T  F  Q  I  P  L  I  P  S  I  S  H  Q  F  L  L  H  T  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0118B03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="94847" PGL_stop="94453"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94847" e_stop="94453"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="94847" e_stop="94453" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94847" stop="94453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94843" stop="94481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGATGCAATGATCGAGAAGTTGCCTCCTTCGTGGAATTATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAGAAATGCCAAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCAAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTTTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  Q  E  L  Q  L  I  L  H  D  L  I  A  E  D  M  V  V  N  E  A  F  Q  V  D  A  M  I  E  K  L  P  P  S  W  N  Y  F  K  N  Y  L  K  H  K  R  K  E  M  K  L  E  D  L  V  I  R  L  K  I  E  E  D  N  R  N  A  K  K  K  S  R  K  S  S  T  I  I  G  V  N  I  V  E  E  A  P  T  K  D  K  K  R  K  K  S  N  G  Q  K  S  E  Q  A  K  K  K  F  K  G  N  C  Y  N  C  G  K  A  G  H  R  S  F   </first_frame>
            <second_frame>  I  V  K  L  L  D  H  K  C  R  N  F  N  L  F  S  M  I  *  L  L  K  I  W  *  *  M  K  L  F  K  W  M  Q  *  S  R  S  C  L  L  R  G  I  I  S  R  I  I  *  S  T  S  V  K  K  *  S  L  K  I  L  *  F  V  S  R  L  R  K  I  T  E  M  P  K  R  S  R  V  R  V  Q  Q  S  L  E  L  I  L  L  K  K  L  L  P  K  T  K  R  E  R  S  P  T  G  R  S  Q  N  R  Q  R  R  N  S  K  A  T  V  I  I  V  A  R  L  V  I  D  L  L  </second_frame>
            <third_frame>   *  *  N  C  W  I  T  S  A  G  T  S  T  Y  S  P  *  S  D  C  *  R  Y  G  S  K  *  S  F  S  S  G  C  N  D  R  E  V  A  S  F  V  E  L  F  Q  E  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  S  Q  D  *  G  R  *  Q  K  C  Q  K  E  V  A  *  E  F  N  N  H  W  S  *  Y  C  *  R  S  S  Y  Q  R  Q  K  E  K  E  V  Q  R  A  E  V  R  T  G  K  E  E  I  Q  R  Q  L  L  *  L  W  Q  G  W  S  *  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94847" stop="94455"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKTVGSQVQELQLILHDLIAEDMVVNEAFQVDAMIEKLPPSWNYFKNYLKHKRKEMKLEDLVIRLKIEEDNRNAKKKSRKSSTIIGVNIVEEAPTKDKKRKKSNGQKSEQAKKKFKGNCYNCGKAGHRSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="95296" PGL_stop="96162"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95296" e_stop="96162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="95296" e_stop="96162" e_length="867"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95296" stop="96162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95296" stop="95867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95297" stop="95704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATAATTGCAGACTTGAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAATACAGATTTGAATAATTTCCTTAAGATTGTTACCAATCTATGTTATGAAAATCCGAAATTACTGGTTGTAATAAATCATTCAAAAACACAAAGTAACTGAGATTTTTAGAACCAGTAAATAAGACGAACAAAAATTTATTTGTAAAAAATAAATGAATCTGTAAAACTTACCAGAATCTGGAATACTCTTTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCTGAGGTTTGATTTGGAATGTAACCTCCTAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAGCTCTACTGTCAGCGAATCAATCCACGGCAGGAAAATACACGAAGAAATATGTGTTTTTAAGAAGAAGGAAGATCAAAAAATTTGTTAGAAAATATTCTGAAGACTAAATGGTATTTATAGGCAAGAAGAATATATTCTGAAAGGTTGCAACCCTTTCAAAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAATAGTGGCGGAAATTTTTTTTTTAAAATATAACGGAATTTAAAAAAAGTCACGCGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACATTTCGGTTAACTTCTGTTATCAACTAATTAATTGAAAATAATTTTTGGCCATTTAATTAATTAAATAAATAAATAAAATAAATTTAAAATTATCTCTCAATCGATCATTTGCCAAAGCGAAAGCCGAAGCCGAAGCGA</gDNA_template>
            <first_frame> I  I  I  A  D  L  K  E  Y  K  I  T  K  I  F  V  S  T  R  N  T  D  L  N  N  F  L  K  I  V  T  N  L  C  Y  E  N  P  K  L  L  V  V  I  N  H  S  K  T  Q  S  N  *  D  F  *  N  Q  *  I  R  R  T  K  I  Y  L  *  K  I  N  E  S  V  K  L  T  R  I  W  N  T  L  F  D  N  L  G  R  K  S  S  P  L  N  S  Q  C  P  L  K  E  I  I  P  L  *  Y  L  R  F  D  L  E  C  N  L  L  G  *  N  D  L  N  Q  *  S  I  D  T  K  S  S  T  V  S  E  S  I  H  G  R  K  I  H  E  E  I  C  V  F  K  K  K  E  D  Q  K  I  C  *  K  I  F  *  R  L  N  G  I  Y  R  Q  E  E  Y  I  L  K  G  C  N  P  F  K  I  D  T  T  I  N  E  R  L  Q  T  F  K  W  Y  *  L  F  L  K  V  A  T  F  Q  N  S  G  G  N  F  F  F  K  I  *  R  N  L  K  K  V  T  R  A  D  P  S  R  V  G  L  T  K  K  L  K  T  F  R  L  T  S  V  I  N  *  L  I  E  N  N  F  W  P  F  N  *  L  N  K  *  I  K  *  I  *  N  Y  L  S  I  D  H  L  P  K  R  K  P  K  P  K  R </first_frame>
            <second_frame>  L  *  L  Q  T  *  R  S  I  K  S  Q  R  F  L  S  P  P  E  I  Q  I  *  I  I  S  L  R  L  L  P  I  Y  V  M  K  I  R  N  Y  W  L  *  *  I  I  Q  K  H  K  V  T  E  I  F  R  T  S  K  *  D  E  Q  K  F  I  C  K  K  *  M  N  L  *  N  L  P  E  S  G  I  L  F  L  I  I  *  E  E  N  Q  V  H  *  I  H  S  V  P  L  R  K  L  F  P  S  S  I  *  G  L  I  W  N  V  T  S  *  G  K  M  I  L  I  S  R  V  *  I  P  K  A  L  L  S  A  N  Q  S  T  A  G  K  Y  T  K  K  Y  V  F  L  R  R  R  K  I  K  K  F  V  R  K  Y  S  E  D  *  M  V  F  I  G  K  K  N  I  F  *  K  V  A  T  L  S  K  L  T  R  P  L  M  K  G  C  K  L  S  N  G  I  D  C  S  *  K  L  Q  P  F  R  I  V  A  E  I  F  F  L  K  Y  N  G  I  *  K  K  S  R  A  R  I  R  V  G  S  G  *  L  K  S  *  K  H  F  G  *  L  L  L  S  T  N  *  L  K  I  I  F  G  H  L  I  N  *  I  N  K  *  N  K  F  K  I  I  S  Q  S  I  I  C  Q  S  E  S  R  S  R  S   </second_frame>
            <third_frame>   Y  N  C  R  L  E  G  V  *  N  H  K  D  F  C  L  H  Q  K  Y  R  F  E  *  F  P  *  D  C  Y  Q  S  M  L  *  K  S  E  I  T  G  C  N  K  S  F  K  N  T  K  *  L  R  F  L  E  P  V  N  K  T  N  K  N  L  F  V  K  N  K  *  I  C  K  T  Y  Q  N  L  E  Y  S  F  *  *  F  R  K  K  I  K  S  T  E  F  T  V  S  P  *  G  N  Y  S  P  L  V  S  E  V  *  F  G  M  *  P  P  R  V  K  *  S  *  S  V  E  Y  R  Y  Q  K  L  Y  C  Q  R  I  N  P  R  Q  E  N  T  R  R  N  M  C  F  *  E  E  G  R  S  K  N  L  L  E  N  I  L  K  T  K  W  Y  L  *  A  R  R  I  Y  S  E  R  L  Q  P  F  Q  N  *  H  D  H  *  *  K  V  A  N  F  Q  M  V  L  T  V  P  E  S  C  N  L  S  E  *  W  R  K  F  F  F  *  N  I  T  E  F  K  K  S  H  A  R  G  S  E  S  G  R  V  N  *  K  V  E  N  I  S  V  N  F  C  Y  Q  L  I  N  *  K  *  F  L  A  I  *  L  I  K  *  I  N  K  I  N  L  K  L  S  L  N  R  S  F  A  K  A  K  A  E  A  E  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0118B03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="105132" PGL_stop="105921"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105132" e_stop="105921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="105132" e_stop="105921" e_length="790"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105132" stop="105921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716477" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATCTTTAAATGGTAAGTCAGTGAAAAATATGATACCCCTTTTTTGAAATCAAAGGATTTTCACAGGATCTTGATTCCCACTTTTTGTCTTTATGTATGAGTCTCTTTGCAGCTGTTGAAGCAGAAATCTGTTTTGAAAGTATGGTGGTTGGTCAAAGACAAATCTTGGATCCCTTTTGGGTATGAACTGAAGATTTAGGGTTTTCTACATGTATTTGGTGTGGAAAGGTGATTGCTTTTTGGGTCAAATTTATTTGATGAAGTGAGTATTAGGGGATTTTTATAAATGGTTTTGGTGTAGAAAGGTGATTGCTTTTTTGGGTATGAACTGAGGATTTGGGGTTTTGTATGAATAGATTTGGTGTGGAAATGTGATTGCTTTTTGGGTTAAATTTATTTGATGAAGTGAGGATTTGGGGTTTTCTATGAATGGTTTTGGTGTAGAAAGGTGATTGCTTTTTTGGGTTTGCTGAATCTTGGACAATGGCGGTTCCATGGAGTACAACACTATGGATTGCTAAGATGGTGTGGATGGCATTGAGTGGTTGGGTAGTCGCTTGCTTGACTATTGCAGATGAGGTTGCTGCCTCTTTTCGAACTGGTGATATTGGTCCTTTTCATGTTGGTTGAGTTATACTGTACAGAAACATCATCTTCTCCTTTGTTTGTGAATTGTTGCTTGCTTCTTACATATTTTGTAAATTTATGGATAAATATTGTTTACAGTGGTTTGATAGAGCTGAAGCTTCAAATAGCAATGTCTTTAGTACTTTATCTGCAAATATTTCT</gDNA_template>
            <first_frame> Q  S  L  N  G  K  S  V  K  N  M  I  P  L  F  *  N  Q  R  I  F  T  G  S  *  F  P  L  F  V  F  M  Y  E  S  L  C  S  C  *  S  R  N  L  F  *  K  Y  G  G  W  S  K  T  N  L  G  S  L  L  G  M  N  *  R  F  R  V  F  Y  M  Y  L  V  W  K  G  D  C  F  L  G  Q  I  Y  L  M  K  *  V  L  G  D  F  Y  K  W  F  W  C  R  K  V  I  A  F  L  G  M  N  *  G  F  G  V  L  Y  E  *  I  W  C  G  N  V  I  A  F  W  V  K  F  I  *  *  S  E  D  L  G  F  S  M  N  G  F  G  V  E  R  *  L  L  F  W  V  C  *  I  L  D  N  G  G  S  M  E  Y  N  T  M  D  C  *  D  G  V  D  G  I  E  W  L  G  S  R  L  L  D  Y  C  R  *  G  C  C  L  F  S  N  W  *  Y  W  S  F  S  C  W  L  S  Y  T  V  Q  K  H  H  L  L  L  C  L  *  I  V  A  C  F  L  H  I  L  *  I  Y  G  *  I  L  F  T  V  V  *  *  S  *  S  F  K  *  Q  C  L  *  Y  F  I  C  K  Y  F  </first_frame>
            <second_frame>  N  L  *  M  V  S  Q  *  K  I  *  Y  P  F  F  E  I  K  G  F  S  Q  D  L  D  S  H  F  L  S  L  C  M  S  L  F  A  A  V  E  A  E  I  C  F  E  S  M  V  V  G  Q  R  Q  I  L  D  P  F  W  V  *  T  E  D  L  G  F  S  T  C  I  W  C  G  K  V  I  A  F  W  V  K  F  I  *  *  S  E  Y  *  G  I  F  I  N  G  F  G  V  E  R  *  L  L  F  W  V  *  T  E  D  L  G  F  C  M  N  R  F  G  V  E  M  *  L  L  F  G  L  N  L  F  D  E  V  R  I  W  G  F  L  *  M  V  L  V  *  K  G  D  C  F  F  G  F  A  E  S  W  T  M  A  V  P  W  S  T  T  L  W  I  A  K  M  V  W  M  A  L  S  G  W  V  V  A  C  L  T  I  A  D  E  V  A  A  S  F  R  T  G  D  I  G  P  F  H  V  G  *  V  I  L  Y  R  N  I  I  F  S  F  V  C  E  L  L  L  A  S  Y  I  F  C  K  F  M  D  K  Y  C  L  Q  W  F  D  R  A  E  A  S  N  S  N  V  F  S  T  L  S  A  N  I  S </second_frame>
            <third_frame>   I  F  K  W  *  V  S  E  K  Y  D  T  P  F  L  K  S  K  D  F  H  R  I  L  I  P  T  F  C  L  Y  V  *  V  S  L  Q  L  L  K  Q  K  S  V  L  K  V  W  W  L  V  K  D  K  S  W  I  P  F  G  Y  E  L  K  I  *  G  F  L  H  V  F  G  V  E  R  *  L  L  F  G  S  N  L  F  D  E  V  S  I  R  G  F  L  *  M  V  L  V  *  K  G  D  C  F  F  G  Y  E  L  R  I  W  G  F  V  *  I  D  L  V  W  K  C  D  C  F  L  G  *  I  Y  L  M  K  *  G  F  G  V  F  Y  E  W  F  W  C  R  K  V  I  A  F  L  G  L  L  N  L  G  Q  W  R  F  H  G  V  Q  H  Y  G  L  L  R  W  C  G  W  H  *  V  V  G  *  S  L  A  *  L  L  Q  M  R  L  L  P  L  F  E  L  V  I  L  V  L  F  M  L  V  E  L  Y  C  T  E  T  S  S  S  P  L  F  V  N  C  C  L  L  L  T  Y  F  V  N  L  W  I  N  I  V  Y  S  G  L  I  E  L  K  L  Q  I  A  M  S  L  V  L  Y  L  Q  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105698" stop="105919"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLQMRLLPLFELVILVLFMLVELYCTETSSSPLFVNCCLLLTYFVNLWINIVYSGLIELKLQIAMSLVLYLQIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="109019" PGL_stop="109788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109019" e_stop="109788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="109019" e_stop="109788" e_length="770"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109019" stop="109788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109020" stop="109180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGAGGTGTTGACTTGGAGAATGTAGATCCTTGAACGTGTTTTGGCGAAATCTTTCTTGTTCAATATCATTGAACGTGTTTTGGCTAAAGTTTCTTCAATTGCTATATATGAGATCAGTCTAGCTTGGAATGTTAAGACAGAGCTAAGGAAACTCCAAAGTACTCTATCCACCATCAAAGTTGTACTTCTAGATGCAAACGAGCAGCAGGCGAAGAACCATGAAGTGAGAGATTGGCTGGAAAAGCTCAGAGATGTTGTTTATGATGTCGATGATTTGATGGATGATTTATCAACACAACTGTTGCTGCGAATGCATTTCGAGTAAAGCTTTAGGAAGAAGGTAAGGAAGTTCTTTTCAGGTTCAAATCCAATTATATATCGATTCAAGATTGGCAGAAAAGTAAAAGAAATCAAGGAGCTGCTGAATGAGATTGCAGATGATTGGAGAAATTTCCACTTCACGGAACATACTTATGTAACTCCAGCTGAGAATACGAGTAGAGAACAAACACACTCCTTTGTGAGGGCATCAGATATCATTGGTAGAGATGATGATCAAGAAAACATTGTATAACAGCTGATAGATTCTCATGATGAGGAAAATATTTTTGTGATTCCTATTGTTGGACTTAGAGGGCTTGGAAAAACCACACTTGTTAAGTTGGTTTATAACAATAATAGGGTTGTTCAGAATTTCAACCTTAGATTGTGGGTTAGTATTTCTGAAGATTTTAGTCTGAGCAAGGTAATTGAGAAAATTGTGAGGTC</gDNA_template>
            <first_frame> K  E  V  L  T  W  R  M  *  I  L  E  R  V  L  A  K  S  F  L  F  N  I  I  E  R  V  L  A  K  V  S  S  I  A  I  Y  E  I  S  L  A  W  N  V  K  T  E  L  R  K  L  Q  S  T  L  S  T  I  K  V  V  L  L  D  A  N  E  Q  Q  A  K  N  H  E  V  R  D  W  L  E  K  L  R  D  V  V  Y  D  V  D  D  L  M  D  D  L  S  T  Q  L  L  L  R  M  H  F  E  *  S  F  R  K  K  V  R  K  F  F  S  G  S  N  P  I  I  Y  R  F  K  I  G  R  K  V  K  E  I  K  E  L  L  N  E  I  A  D  D  W  R  N  F  H  F  T  E  H  T  Y  V  T  P  A  E  N  T  S  R  E  Q  T  H  S  F  V  R  A  S  D  I  I  G  R  D  D  D  Q  E  N  I  V  *  Q  L  I  D  S  H  D  E  E  N  I  F  V  I  P  I  V  G  L  R  G  L  G  K  T  T  L  V  K  L  V  Y  N  N  N  R  V  V  Q  N  F  N  L  R  L  W  V  S  I  S  E  D  F  S  L  S  K  V  I  E  K  I  V  R   </first_frame>
            <second_frame>  K  R  C  *  L  G  E  C  R  S  L  N  V  F  W  R  N  L  S  C  S  I  S  L  N  V  F  W  L  K  F  L  Q  L  L  Y  M  R  S  V  *  L  G  M  L  R  Q  S  *  G  N  S  K  V  L  Y  P  P  S  K  L  Y  F  *  M  Q  T  S  S  R  R  R  T  M  K  *  E  I  G  W  K  S  S  E  M  L  F  M  M  S  M  I  *  W  M  I  Y  Q  H  N  C  C  C  E  C  I  S  S  K  A  L  G  R  R  *  G  S  S  F  Q  V  Q  I  Q  L  Y  I  D  S  R  L  A  E  K  *  K  K  S  R  S  C  *  M  R  L  Q  M  I  G  E  I  S  T  S  R  N  I  L  M  *  L  Q  L  R  I  R  V  E  N  K  H  T  P  L  *  G  H  Q  I  S  L  V  E  M  M  I  K  K  T  L  Y  N  S  *  *  I  L  M  M  R  K  I  F  L  *  F  L  L  L  D  L  E  G  L  E  K  P  H  L  L  S  W  F  I  T  I  I  G  L  F  R  I  S  T  L  D  C  G  L  V  F  L  K  I  L  V  *  A  R  *  L  R  K  L  *  G  </second_frame>
            <third_frame>   R  G  V  D  L  E  N  V  D  P  *  T  C  F  G  E  I  F  L  V  Q  Y  H  *  T  C  F  G  *  S  F  F  N  C  Y  I  *  D  Q  S  S  L  E  C  *  D  R  A  K  E  T  P  K  Y  S  I  H  H  Q  S  C  T  S  R  C  K  R  A  A  G  E  E  P  *  S  E  R  L  A  G  K  A  Q  R  C  C  L  *  C  R  *  F  D  G  *  F  I  N  T  T  V  A  A  N  A  F  R  V  K  L  *  E  E  G  K  E  V  L  F  R  F  K  S  N  Y  I  S  I  Q  D  W  Q  K  S  K  R  N  Q  G  A  A  E  *  D  C  R  *  L  E  K  F  P  L  H  G  T  Y  L  C  N  S  S  *  E  Y  E  *  R  T  N  T  L  L  C  E  G  I  R  Y  H  W  *  R  *  *  S  R  K  H  C  I  T  A  D  R  F  S  *  *  G  K  Y  F  C  D  S  Y  C  W  T  *  R  A  W  K  N  H  T  C  *  V  G  L  *  Q  *  *  G  C  S  E  F  Q  P  *  I  V  G  *  Y  F  *  R  F  *  S  E  Q  G  N  *  E  N  C  E  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109046" stop="109345"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILERVLAKSFLFNIIERVLAKVSSIAIYEISLAWNVKTELRKLQSTLSTIKVVLLDANEQQAKNHEVRDWLEKLRDVVYDVDDLMDDLSTQLLLRMHFE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109346" stop="109594"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFRKKVRKFFSGSNPIIYRFKIGRKVKEIKELLNEIADDWRNFHFTEHTYVTPAENTSREQTHSFVRASDIIGRDDDQENIV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109595" stop="109786"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLIDSHDEENIFVIPIVGLRGLGKTTLVKLVYNNNRVVQNFNLRLWVSISEDFSLSKVIEKIVR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="109935" PGL_stop="111169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109935" e_stop="111169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="109935" e_stop="111169" e_length="1235"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109935" stop="110792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110373" stop="111169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110429" stop="110796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241243" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGATGAATTGTTCCAGAGGTAGTAAAATTGTTGTCACTACACGTAGTAAGATGGTTGCTTTGATTACTGGAACAGTTCCGCCTTATTATTTGAGAGGCCTTGGTAATGATGACTGCTTATCTTATTTTTGAAATGTGCATTTGGAGGGCAGGACAATTTGTTTCCTAATCTAGTAGAAATAGGAAAAGAAATTGTGAAAAAGTGTGGAGGAGTGCCTTTGGCTGTGAAAACCTTGGGAAGGTTGTTGTACATGAAAACAGACAAGAACGAATGGTTGCAGATAAGAGACGATGAGATATGGGAAATCGAACAGAATAAATCTGACATCTTACCAATATTGAGGTTGAGCTATGAACAGATGCCATCACATCTAAGACAGTGCTTTGCCTATTGCCCCATGTTACCCAAAGGTCAAGAAATTCCGTGGGAGGATTTTATCAATCGCTGGGCTCAAGGATTTATCCAGAGTTCAAACAGAAACAGGAAGTTGGAAGATATCGGTAATCAGTACTTTGATGAGTTGCTATCAAGGTTTTGCTTCCTAGATGTGATACAAGCAGCTTTTGATGGAGAAATATTGGCTTGTAAGATACACAATCTTGTGCATGATCTTGCACAGTCAGTATCAGGTGCAGAGTGCTTAAATGTGAAACCCAATGCTTTCGTGGTTTCTGAGAGAGTTCGCCACTTATTCTTCCATGCAGAAGATATGTCTAGGAAATACTTCCCCAGATTTTTGCTTCCTTTGCATAAGGTGAGGTCTTTTTTTTTATTCGTTTAATATTGGACCTGTAAACAAGTTTTTTGTCAAGACAATGTTGTCAAATTTCAAATGCCTTCGGATGTTAGTCTTGAACAATCTAGATCTTGAGGAGTTGCCAACTTCGATAGGTAACTTGAATGAATTAAGATACCTTAACCTTAGTGACAGTGGTAATATCAAGTTTATTCCAAGGTCTATGAGCAAATTAGTAAATTTGCACACCCTTAACCTCATTAACTGTGAACAGCTTAAGGAGTTGCCAAGAGACTTTAGAAAGTTAATCAGCCTGAAGACCTTGTATTTGACCACACATCAGATATTAGCAGGGATCAAGAATCAACATTCTTTCACTTCTCTTCAATTTTTGCTTCTTTTCGAATGTTGTTTCCCAAAATTGCAGCCAGAACTGGTGCAGCATTTTACTGAACTTCGGTTGTTGCGTATCTACGAATGCCAAGTTTATGTTCTCTTC</gDNA_template>
            <first_frame> R  *  I  V  P  E  V  V  K  L  L  S  L  H  V  V  R  W  L  L  *  L  L  E  Q  F  R  L  I  I  *  E  A  L  V  M  M  T  A  Y  L  I  F  E  M  C  I  W  R  A  G  Q  F  V  S  *  S  S  R  N  R  K  R  N  C  E  K  V  W  R  S  A  F  G  C  E  N  L  G  K  V  V  V  H  E  N  R  Q  E  R  M  V  A  D  K  R  R  *  D  M  G  N  R  T  E  *  I  *  H  L  T  N  I  E  V  E  L  *  T  D  A  I  T  S  K  T  V  L  C  L  L  P  H  V  T  Q  R  S  R  N  S  V  G  G  F  Y  Q  S  L  G  S  R  I  Y  P  E  F  K  Q  K  Q  E  V  G  R  Y  R  *  S  V  L  *  *  V  A  I  K  V  L  L  P  R  C  D  T  S  S  F  *  W  R  N  I  G  L  *  D  T  Q  S  C  A  *  S  C  T  V  S  I  R  C  R  V  L  K  C  E  T  Q  C  F  R  G  F  *  E  S  S  P  L  I  L  P  C  R  R  Y  V  *  E  I  L  P  Q  I  F  A  S  F  A  *  G  E  V  F  F  F  I  R  L  I  L  D  L  *  T  S  F  L  S  R  Q  C  C  Q  I  S  N  A  F  G  C  *  S  *  T  I  *  I  L  R  S  C  Q  L  R  *  V  T  *  M  N  *  D  T  L  T  L  V  T  V  V  I  S  S  L  F  Q  G  L  *  A  N  *  *  I  C  T  P  L  T  S  L  T  V  N  S  L  R  S  C  Q  E  T  L  E  S  *  S  A  *  R  P  C  I  *  P  H  I  R  Y  *  Q  G  S  R  I  N  I  L  S  L  L  F  N  F  C  F  F  S  N  V  V  S  Q  N  C  S  Q  N  W  C  S  I  L  L  N  F  G  C  C  V  S  T  N  A  K  F  M  F  S   </first_frame>
            <second_frame>  D  E  L  F  Q  R  *  *  N  C  C  H  Y  T  *  *  D  G  C  F  D  Y  W  N  S  S  A  L  L  F  E  R  P  W  *  *  *  L  L  I  L  F  L  K  C  A  F  G  G  Q  D  N  L  F  P  N  L  V  E  I  G  K  E  I  V  K  K  C  G  G  V  P  L  A  V  K  T  L  G  R  L  L  Y  M  K  T  D  K  N  E  W  L  Q  I  R  D  D  E  I  W  E  I  E  Q  N  K  S  D  I  L  P  I  L  R  L  S  Y  E  Q  M  P  S  H  L  R  Q  C  F  A  Y  C  P  M  L  P  K  G  Q  E  I  P  W  E  D  F  I  N  R  W  A  Q  G  F  I  Q  S  S  N  R  N  R  K  L  E  D  I  G  N  Q  Y  F  D  E  L  L  S  R  F  C  F  L  D  V  I  Q  A  A  F  D  G  E  I  L  A  C  K  I  H  N  L  V  H  D  L  A  Q  S  V  S  G  A  E  C  L  N  V  K  P  N  A  F  V  V  S  E  R  V  R  H  L  F  F  H  A  E  D  M  S  R  K  Y  F  P  R  F  L  L  P  L  H  K  V  R  S  F  F  L  F  V  *  Y  W  T  C  K  Q  V  F  C  Q  D  N  V  V  K  F  Q  M  P  S  D  V  S  L  E  Q  S  R  S  *  G  V  A  N  F  D  R  *  L  E  *  I  K  I  P  *  P  *  *  Q  W  *  Y  Q  V  Y  S  K  V  Y  E  Q  I  S  K  F  A  H  P  *  P  H  *  L  *  T  A  *  G  V  A  K  R  L  *  K  V  N  Q  P  E  D  L  V  F  D  H  T  S  D  I  S  R  D  Q  E  S  T  F  F  H  F  S  S  I  F  A  S  F  R  M  L  F  P  K  I  A  A  R  T  G  A  A  F  Y  *  T  S  V  V  A  Y  L  R  M  P  S  L  C  S  L  </second_frame>
            <third_frame>   M  N  C  S  R  G  S  K  I  V  V  T  T  R  S  K  M  V  A  L  I  T  G  T  V  P  P  Y  Y  L  R  G  L  G  N  D  D  C  L  S  Y  F  *  N  V  H  L  E  G  R  T  I  C  F  L  I  *  *  K  *  E  K  K  L  *  K  S  V  E  E  C  L  W  L  *  K  P  W  E  G  C  C  T  *  K  Q  T  R  T  N  G  C  R  *  E  T  M  R  Y  G  K  S  N  R  I  N  L  T  S  Y  Q  Y  *  G  *  A  M  N  R  C  H  H  I  *  D  S  A  L  P  I  A  P  C  Y  P  K  V  K  K  F  R  G  R  I  L  S  I  A  G  L  K  D  L  S  R  V  Q  T  E  T  G  S  W  K  I  S  V  I  S  T  L  M  S  C  Y  Q  G  F  A  S  *  M  *  Y  K  Q  L  L  M  E  K  Y  W  L  V  R  Y  T  I  L  C  M  I  L  H  S  Q  Y  Q  V  Q  S  A  *  M  *  N  P  M  L  S  W  F  L  R  E  F  A  T  Y  S  S  M  Q  K  I  C  L  G  N  T  S  P  D  F  C  F  L  C  I  R  *  G  L  F  F  Y  S  F  N  I  G  P  V  N  K  F  F  V  K  T  M  L  S  N  F  K  C  L  R  M  L  V  L  N  N  L  D  L  E  E  L  P  T  S  I  G  N  L  N  E  L  R  Y  L  N  L  S  D  S  G  N  I  K  F  I  P  R  S  M  S  K  L  V  N  L  H  T  L  N  L  I  N  C  E  Q  L  K  E  L  P  R  D  F  R  K  L  I  S  L  K  T  L  Y  L  T  T  H  Q  I  L  A  G  I  K  N  Q  H  S  F  T  S  L  Q  F  L  L  L  F  E  C  C  F  P  K  L  Q  P  E  L  V  Q  H  F  T  E  L  R  L  L  R  I  Y  E  C  Q  V  Y  V  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110047" stop="110715"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLILFLKCAFGGQDNLFPNLVEIGKEIVKKCGGVPLAVKTLGRLLYMKTDKNEWLQIRDDEIWEIEQNKSDILPILRLSYEQMPSHLRQCFAYCPMLPKGQEIPWEDFINRWAQGFIQSSNRNRKLEDIGNQYFDELLSRFCFLDVIQAAFDGEILACKIHNLVHDLAQSVSGAECLNVKPNAFVVSERVRHLFFHAEDMSRKYFPRFLLPLHKVRSFFLFV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110693" stop="111169"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLFFYSFNIGPVNKFFVKTMLSNFKCLRMLVLNNLDLEELPTSIGNLNELRYLNLSDSGNIKFIPRSMSKLVNLHTLNLINCEQLKELPRDFRKLISLKTLYLTTHQILAGIKNQHSFTSLQFLLLFECCFPKLQPELVQHFTELRLLRIYECQVYVLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="120505" PGL_stop="119780"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120505" e_stop="119780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="120505" e_stop="119780" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120505" stop="120021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120080" stop="119780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACGCTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTTCTTCCCGGCCACCCCCGAATCACCACCGCTCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACTAAATACACCCCTTCCCGATAGTGAACCAACAACCTACCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAATTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGACTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGATTGATAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCACAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCAGGGCATGCTTGATCAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGATTGGTACATACGTCTGAAAACATT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  S  V  L  G  S  S  R  P  P  P  N  H  H  R  S  C  H  P  P  I  L  I  P  C  *  P  V  A  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  *  I  H  P  F  P  I  V  N  Q  Q  P  T  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  D  *  *  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  G  H  A  *  S  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  Q  A  S  P  P  *  L  V  H  T  S  E  N  I </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  R  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  G  H  P  R  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  P  W  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  P  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  I  W  V  L  V  P  K  P  H  G  R  H  P  V  D  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  I  D  K  G  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  P  V  I  R  Q  E  T  I  R  L  V  L  S  L  A  V  H  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  Q  G  M  L  D  Q  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  R  D  W  Y  I  R  L  K  T   </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  A  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  F  G  F  F  P  A  T  P  E  S  P  P  L  V  P  P  P  N  T  H  P  M  L  T  R  G  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  L  N  T  P  L  P  D  S  E  P  T  T  Y  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  F  G  F  L  Y  L  S  P  M  G  G  T  Q  W  T  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  P  G  T  R  L  V  *  L  I  K  A  T  I  R  S  M  G  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  P  C  T  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  R  A  C  L  I  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  L  C  M  G  S  S  K  P  P  V  I  G  T  Y  V  *  K  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120270" stop="119782"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNNLPVASKNAYWRHAMDDEFKALTDQKIWVLVPKPHGRHPVDCKWVYKIKHNADGSISRYKARLIDKGYNQEYGLDYSETFSPVIRQETIRLVLSLAVHNNWLINQLDVSNAFLQGMLDQTIYMTQPPGYVDPRFPQHVCKLQKSLYGLKQAPRDWYIRLKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="138644" PGL_stop="137987"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="138644" e_stop="137987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="138644" e_stop="137987" e_length="658"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138644" stop="137987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGATTAACCAGGTTCTCACTTATCTTAGCGGGTTATCTGATCGGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAGTAGGCACGTTTCCTCGATTGACTATAGGGTCTATAATGACGAGTGATCAGCATGAACTTTTCACTAAATTCTTAAAGCTGAAAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAACTGCTACATAAGATGGACATAGTGGAACGATTCGGTGTTGAGTTTGTGACCTACCAGTTTCAGGGGAATGCCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACCTGGGCATCATTCTCCAACTTATTTATGGAGAAATATATACCCTGGACTTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGCCTAAAGCAAGGAAGGATGTCTGTTGCTGTTTATGAGGCCAAATTTCGTGCGCTATCCAGGTATGCCACTCAGCTTTGCTTCAGTCCACAAGAGAGAATTCGCCGCTTTGTGAAAGTATTGAGGTCAGATTTGCAGATCCCAACCTTACAGGTAGCT</gDNA_template>
            <first_frame> R  *  L  T  R  F  S  L  I  L  A  G  Y  L  I  G  A  R  H  L  Q  C  F  L  Y  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  D  *  L  *  G  L  *  *  R  V  I  S  M  N  F  S  L  N  S  *  S  *  K  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  T  A  T  *  D  G  H  S  G  T  I  R  C  *  V  C  D  L  P  V  S  G  E  C  Q  N  V  V  A  V  V  C  *  V  S  T  S  T  G  T  T  Y  D  L  G  I  I  L  Q  L  I  Y  G  E  I  Y  T  L  D  F  E  G  *  E  E  R  *  V  P  E  P  K  A  R  K  D  V  C  C  C  L  *  G  Q  I  S  C  A  I  Q  V  C  H  S  A  L  L  Q  S  T  R  E  N  S  P  L  C  E  S  I  E  V  R  F  A  D  P  N  L  T  G  S  </first_frame>
            <second_frame>  D  D  *  P  G  S  H  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  S  C  T  S  T  S  G  S  G  S  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  S  R  H  V  S  S  I  D  Y  R  V  Y  N  D  E  *  S  A  *  T  F  H  *  I  L  K  A  E  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  D  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  S  N  L  F  M  E  K  Y  I  P  W  T  L  R  D  R  R  R  D  E  F  L  S  L  K  Q  G  R  M  S  V  A  V  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  V  L  R  S  D  L  Q  I  P  T  L  Q  V  A </second_frame>
            <third_frame>   M  I  N  Q  V  L  T  Y  L  S  G  L  S  D  R  G  Q  T  P  P  V  F  P  V  P  A  P  Q  V  P  G  V  Q  H  A  A  V  V  A  P  R  M  D  A  S  L  E  V  G  T  F  P  R  L  T  I  G  S  I  M  T  S  D  Q  H  E  L  F  T  K  F  L  K  L  K  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  N  C  Y  I  R  W  T  *  W  N  D  S  V  L  S  L  *  P  T  S  F  R  G  M  P  K  C  G  G  G  R  M  L  S  V  N  Q  H  R  H  H  L  *  P  G  H  H  S  P  T  Y  L  W  R  N  I  Y  P  G  L  *  G  I  G  G  E  M  S  S  *  A  *  S  K  E  G  C  L  L  L  F  M  R  P  N  F  V  R  Y  P  G  M  P  L  S  F  A  S  V  H  K  R  E  F  A  A  L  *  K  Y  *  G  Q  I  C  R  S  Q  P  Y  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118B03.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138433" stop="137987"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILKAEKPPVFKGAESEDAYDFLVDCHELLHKMDIVERFGVEFVTYQFQGNAKMWWRSYVECQPAQAPPMTWASFSNLFMEKYIPWTLRDRRRDEFLSLKQGRMSVAVYEAKFRALSRYATQLCFSPQERIRRFVKVLRSDLQIPTLQVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 218 chains have been computed
$ 
$ memory statistics:
$ 867080 bytes spliced alignments in total
$ 51 spliced alignments have been stored
$ 17001 bytes was the average size of a spliced alignment
$ 32912 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1371 bytes was the average size of a predicted gene location
$ 7 megabytes was the average size of the backtrace matrix
$ 306 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 14:48:20
-->
