<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 20:51:35"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739410" ref_strand="+" ref_description="SGN-E739410 [LC17BD07]">
      <seq>ctgtaggcacgagcagaaagcactgatctggaaaagactacaggaaaatctatgggttctattgatctcttggatcagtcccagatcttctcaaagaaagtcatccaaaaaagtggaaccaagaatctgatggtcgacgttcatgaggatgataattccagttcaaaggccaaagttctgaaggtcaaatgtgcttcaaccgacaaacttcctgataaacctactcctgcgacctcacttaattctgacataccagtgacttcggatgctgaaattggaactttaccaccccccataaaatttaataaaattaagttttcaaataagatgagagccgaggatgattccaatgaagcttacaagccttccattctggtaaggccaccaatggagactgcagagtcacatcgcagcaagaaaattgtaattaagcaactcaaggactcaacaagtgtggatgaaggcttcctggatggaagcagtggcatggagtacaggaagacaaagaaaatcaacgaattgtcgtacatggggcagcaagagagggaatacttatatgaagagactttaggaaggaaaaaaatggatgataaacgattatgggaagaagaggagaggaggagaattgctgtcagacagagagaagaaagagccaagatatatgagcgacagaaggcattagaagaacaagagaaattagcggcgattgaaagctatcaagacgccataagaagagaaagggaggaagaagaacgtcttaaagaaaaaaagaagaaaaagaagaagactgaaataagagatgattacttggatgattttcttcccagaagaaacgacagaaggataccagatcgagacagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="27476" stop="28933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27775" g_stop="28633" g_length="859"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="862" r_length="862" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E739410" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27775" e_stop="28633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGGCACGAGCAGAAAGCACTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTATTGATATCTTGGATCAGTCCCAGATCTTCTCAAAGAAA---ATCCAAAAAAGTGGAACCAAGAATCTGATGGTCGACGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGCTTCAACCGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATACCAGTGACTTCGGATGCTGAAATTGGAACTTTACCACCCCCCATAAAATTTAATAAAATTAAGTTTTCAAATAAGATGAGAGCCGAGGATGATTCCAATGAAGCTTACAAGCCTTCCATTCTGGTAAGGCCACCAATGGAGACTGCAGAGTCACATCGCAGCAAGAAAATTGTAATTAAGCAACTCAAGGACTCAACAAGTGTGGATGAAGGCTTCCTGGATGGAAGCAGTGGCATGGAGTACAGGAAGACAAAGAAAATCAATGAATTGTCGTACATGGGGCAGCAAGAGAGGGAATACTTATATGAAGAGACTTTAGGAAGGAAAAAAATGGATGATAAACGATTATGGGAAGAAGAGGAGAGGAGGAGAATTGCTGTCAGACAGAGAGAAGAAAGAGCCAAGATATATGAGCGACAGAAGGCATTAGAAGAACAAGAGAAATTAGCGGCGATTGAAAGCTATCAAGACGCCATAAGAAGAGAAAGGGAGGAAGAAGAACGTCTTAAAGAAAAAAAGAAGAAAAAGAAGAAGACTGAAATAAGAGATGATTACTTGGATGATTTTCTTCCCAGAAGAAACGACAGAAGGATACCAGATCGAGACAGAT</genome_strand>
        <mrna_strand>CTGTAGGCACGAGCAGAAAGCACTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTATTGATCTCTTGGATCAGTCCCAGATCTTCTCAAAGAAAGTCATCCAAAAAAGTGGAACCAAGAATCTGATGGTCGACGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGCTTCAACCGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATACCAGTGACTTCGGATGCTGAAATTGGAACTTTACCACCCCCCATAAAATTTAATAAAATTAAGTTTTCAAATAAGATGAGAGCCGAGGATGATTCCAATGAAGCTTACAAGCCTTCCATTCTGGTAAGGCCACCAATGGAGACTGCAGAGTCACATCGCAGCAAGAAAATTGTAATTAAGCAACTCAAGGACTCAACAAGTGTGGATGAAGGCTTCCTGGATGGAAGCAGTGGCATGGAGTACAGGAAGACAAAGAAAATCAACGAATTGTCGTACATGGGGCAGCAAGAGAGGGAATACTTATATGAAGAGACTTTAGGAAGGAAAAAAATGGATGATAAACGATTATGGGAAGAAGAGGAGAGGAGGAGAATTGCTGTCAGACAGAGAGAAGAAAGAGCCAAGATATATGAGCGACAGAAGGCATTAGAAGAACAAGAGAAATTAGCGGCGATTGAAAGCTATCAAGACGCCATAAGAAGAGAAAGGGAGGAAGAAGAACGTCTTAAAGAAAAAAAGAAGAAAAAGAAGAAGACTGAAATAAGAGATGATTACTTGGATGATTTTCTTCCCAGAAGAAACGACAGAAGGATACCAGATCGAGACAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466180" ref_strand="+" ref_description="SGN-E466180 [cPRO-23-M24]">
      <seq>gcagaaagcattgatctggaaaagactacaggaaaatctatgggttctactgatctcttggatcagccccagatcttctcaaagaaagccatccaaaaaagtggaacgaagaatgtgatggtcgaagttcatgaggatgataattccagttcaaaggccaaagttctgaaggtcaaatgtggttcaacagacaaacttcctgataaacctactcctgcgacctcacttaattctgacataccagtgacttcagatgctgaaattggaactgtaccaccccccataaaatttaataaaattaagttttcaaataagatgagagctgaggatgattccaatgaagctcacaagccttccattctggtaaggccaccaacggagactgcagactcacatcgcagcaagaaaattgtaattaagcaacttaaggactccacaagtgtggatgaaggattcttggatggaagcagtggcatggagttcaggaagacaaagaaaatcaacgaattgtcgtacttggggcagcaagagagggaatacttctatgaagagactttaggaaggaaaaaaatggatgataaacgattatgggaagaggaggagaggaggagaattgctgtgaggcagagagaagaaagagcccagatatatgagcgacagaaggcattagaagaacaggagaaactagcggcgattgaaagctatcaagacgccataagaagagagagggaggaagaagaacgtctaaaggaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="27487" stop="28844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27787" g_stop="28542" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E466180" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27787" e_stop="28542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAGCACTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTATTGATATCTTGGATCAGTCCCAGATCTTCTCAAAGAAA---ATCCAAAAAAGTGGAACCAAGAATCTGATGGTCGACGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGCTTCAACCGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATACCAGTGACTTCGGATGCTGAAATTGGAACTTTACCACCCCCCATAAAATTTAATAAAATTAAGTTTTCAAATAAGATGAGAGCCGAGGATGATTCCAATGAAGCTTACAAGCCTTCCATTCTGGTAAGGCCACCAATGGAGACTGCAGAGTCACATCGCAGCAAGAAAATTGTAATTAAGCAACTCAAGGACTCAACAAGTGTGGATGAAGGCTTCCTGGATGGAAGCAGTGGCATGGAGTACAGGAAGACAAAGAAAATCAATGAATTGTCGTACATGGGGCAGCAAGAGAGGGAATACTTATATGAAGAGACTTTAGGAAGGAAAAAAATGGATGATAAACGATTATGGGAAGAAGAGGAGAGGAGGAGAATTGCTGTCAGACAGAGAGAAGAAAGAGCCAAGATATATGAGCGACAGAAGGCATTAGAAGAACAAGAGAAATTAGCGGCGATTGAAAGCTATCAAGACGCCATAAGAAGAGAAAGGGAGGAAGAAGAACGTCTTAAAGAAAAAAAG</genome_strand>
        <mrna_strand>GCAGAAAGCATTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTACTGATCTCTTGGATCAGCCCCAGATCTTCTCAAAGAAAGCCATCCAAAAAAGTGGAACGAAGAATGTGATGGTCGAAGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGGTTCAACAGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATACCAGTGACTTCAGATGCTGAAATTGGAACTGTACCACCCCCCATAAAATTTAATAAAATTAAGTTTTCAAATAAGATGAGAGCTGAGGATGATTCCAATGAAGCTCACAAGCCTTCCATTCTGGTAAGGCCACCAACGGAGACTGCAGACTCACATCGCAGCAAGAAAATTGTAATTAAGCAACTTAAGGACTCCACAAGTGTGGATGAAGGATTCTTGGATGGAAGCAGTGGCATGGAGTTCAGGAAGACAAAGAAAATCAACGAATTGTCGTACTTGGGGCAGCAAGAGAGGGAATACTTCTATGAAGAGACTTTAGGAAGGAAAAAAATGGATGATAAACGATTATGGGAAGAGGAGGAGAGGAGGAGAATTGCTGTGAGGCAGAGAGAAGAAAGAGCCCAGATATATGAGCGACAGAAGGCATTAGAAGAACAGGAGAAACTAGCGGCGATTGAAAGCTATCAAGACGCCATAAGAAGAGAGAGGGAGGAAGAAGAACGTCTAAAGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458797" ref_strand="+" ref_description="SGN-E458797 [cPRO-7-M12]">
      <seq>gcagaaagcattgatctggaaaagactacaggaaaatctatgggttctactgatctcttggatcagccccagatcttctcaaagaaagccatccaaaaaagtggaacgaagaatgtgatggtcgaagttcatgaggatgataattccagttcaaaggccaaagttctgaaggtcaaatgtggttcaacagacaaacttcctgataaacctactcctgcgacctcacttaattctgacatacccagtgacttcagatgctgaaatttggaaactgtaccacccccccataaaattttaataaaattaaagttttcaaataagatgagagctgaggatgattcccaatgaagctcacaaagccttccattctgggtaaggccaccaaacggagactgcagactcacatcgcagcaagaaaattgtaattaagcaacttaaggactccacaagtgtggatgaaagatttctggatggaagcagtgggcatggagttcaggaagacaaagaaaatcacgaattgtcgtacttggggcagncagagagggaatacttctatgaagagactttagggaagaaaaaatggatgataaacgattatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="27487" stop="28676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27787" g_stop="28376" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E458797" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27787" e_stop="28376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAGCACTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTATTGATATCTTGGATCAGTCCCAGATCTTCTCAAAGAAA---ATCCAAAAAAGTGGAACCAAGAATCTGATGGTCGACGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGCTTCAACCGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATA-CCAGTGACTTCGGATGCTGAAA-TTGG-AACTTTACCA-CCCCCCATAAAA-TTTAATAAAATT-AAGTTTTCAAATAAGATGAGAGCCGAGGATGATT-CCAATGAAGCTTAC-AAGCCTTCCATTCT-GGTAAGGCCACCAA-TGGAGACTGCAGAGTCACATCGCAGCAAGAAAATTGTAATTAAGCAACTCAAGGACTCAACAAGTGTGGATGAAGGCTTCCTGGATGGAAGCAGT-GGCATGGAGTACAGGAAGACAAAGAAAATCAATGAATTGTCGTACATGGGGCAGCAAGAGAGGGAATACTTATATGAAGAGACTTTAGGAAGGAAAAAAATGGATGATAAACGATTATGGGA</genome_strand>
        <mrna_strand>GCAGAAAGCATTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTACTGATCTCTTGGATCAGCCCCAGATCTTCTCAAAGAAAGCCATCCAAAAAAGTGGAACGAAGAATGTGATGGTCGAAGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGGTTCAACAGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATACCCAGTGACTTCAGATGCTGAAATTTGGAAACTGTACCACCCCCCCATAAAATTTTAATAAAATTAAAGTTTTCAAATAAGATGAGAGCTGAGGATGATTCCCAATGAAGCTCACAAAGCCTTCCATTCTGGGTAAGGCCACCAAACGGAGACTGCAGACTCACATCGCAGCAAGAAAATTGTAATTAAGCAACTTAAGGACTCCACAAGTGTGGATGAAAGATTTCTGGATGGAAGCAGTGGGCATGGAGTTCAGGAAGACAAAGAAAATC-ACGAATTGTCGTACTTGGGGCAGNCAGAGAGGGAATACTTCTATGAAGAGACTTTAGGGAAG-AAAAAATGGATGATAAACGATTATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466746" ref_strand="+" ref_description="SGN-E466746 [cPRO-25-P10]">
      <seq>gcagaaagcattgatctggaaaagactacaggaaaatctatgggttctactgatctcttggatcagccccagatcttctcaaagaaagccatccaaaaaagtggaacgaagaatgtgatggtcgaagttcatgaggatgataattccagttcaaaggccaaagttctgaaggtcaaatgtggttcaacagacaaacttcctgataaacctactcctgcgacctcacttaattctgacataccagtgacttcagatgctgaaattggaactgtaccaccccccataaaatttaataaaattaagttttcaaataagatgagagctgaggatgattccaatgaagctcacaagccttccattctggtaaggccaccaacggagactgcagactcacatcgcagcaagaaaattgtaattaagcaacttaaggactccacaagtgtggatgaaggatttctggatggaagcagtggcatggagttcaggaagacaaagaaatcaacgaattgtcgtacttggggcagncagagagggaatacttctatgaagagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="27487" stop="28639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27787" g_stop="28339" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E466746" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27787" e_stop="28339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAGCACTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTATTGATATCTTGGATCAGTCCCAGATCTTCTCAAAGAAA---ATCCAAAAAAGTGGAACCAAGAATCTGATGGTCGACGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGCTTCAACCGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATACCAGTGACTTCGGATGCTGAAATTGGAACTTTACCACCCCCCATAAAATTTAATAAAATTAAGTTTTCAAATAAGATGAGAGCCGAGGATGATTCCAATGAAGCTTACAAGCCTTCCATTCTGGTAAGGCCACCAATGGAGACTGCAGAGTCACATCGCAGCAAGAAAATTGTAATTAAGCAACTCAAGGACTCAACAAGTGTGGATGAAGGCTTCCTGGATGGAAGCAGTGGCATGGAGTACAGGAAGACAAAGAAAATCAATGAATTGTCGTACATGGGGCAGCAAGAGAGGGAATACTTATATGAAGAGACTT</genome_strand>
        <mrna_strand>GCAGAAAGCATTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTACTGATCTCTTGGATCAGCCCCAGATCTTCTCAAAGAAAGCCATCCAAAAAAGTGGAACGAAGAATGTGATGGTCGAAGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGGTTCAACAGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATACCAGTGACTTCAGATGCTGAAATTGGAACTGTACCACCCCCCATAAAATTTAATAAAATTAAGTTTTCAAATAAGATGAGAGCTGAGGATGATTCCAATGAAGCTCACAAGCCTTCCATTCTGGTAAGGCCACCAACGGAGACTGCAGACTCACATCGCAGCAAGAAAATTGTAATTAAGCAACTTAAGGACTCCACAAGTGTGGATGAAGGATTTCTGGATGGAAGCAGTGGCATGGAGTTCAGGAAGACAAAG-AAATCAACGAATTGTCGTACTTGGGGCAGNCAGAGAGGGAATACTTCTATGAAGAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430100" ref_strand="+" ref_description="SGN-E430100 [STM-53-K9]">
      <seq>gcagaaagcattgatctggaaaagactacaggaaaatctatgggttctactgatctcttggatcagccccagatcttctcaaagaaagccatccaaaaaagtggaacgaagaatgtgatggtcgaagttcatgaggatgataattccagttcaaaggccaaagttctgaaggtcaaatgtggttcaacagacaaacttcctgataaacctactcctgcgacctcacttaattctgacataccagtgacttcagatgctgaaattggaactgtaccaccccccataaaatttaataaaattaagttttcaaataagatgagagctgaggatgattccaatgaagctcacaagccttccattctggtaaggccaccaacggagactgcagactcacatcgcagcaagaaaattgtaattaagcaacttaaggactccacaagtgtggatgaaggattcttggatggaagcagtggcatggagttcacgaagacaaagaaaatcaacgaattgtcgtacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="27487" stop="28604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27787" g_stop="28304" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E430100" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27787" e_stop="28304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAGCACTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTATTGATATCTTGGATCAGTCCCAGATCTTCTCAAAGAAA---ATCCAAAAAAGTGGAACCAAGAATCTGATGGTCGACGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGCTTCAACCGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATACCAGTGACTTCGGATGCTGAAATTGGAACTTTACCACCCCCCATAAAATTTAATAAAATTAAGTTTTCAAATAAGATGAGAGCCGAGGATGATTCCAATGAAGCTTACAAGCCTTCCATTCTGGTAAGGCCACCAATGGAGACTGCAGAGTCACATCGCAGCAAGAAAATTGTAATTAAGCAACTCAAGGACTCAACAAGTGTGGATGAAGGCTTCCTGGATGGAAGCAGTGGCATGGAGTACAGGAAGACAAAGAAAATCAATGAATTGTCGTACATGGG</genome_strand>
        <mrna_strand>GCAGAAAGCATTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTACTGATCTCTTGGATCAGCCCCAGATCTTCTCAAAGAAAGCCATCCAAAAAAGTGGAACGAAGAATGTGATGGTCGAAGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGGTTCAACAGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATACCAGTGACTTCAGATGCTGAAATTGGAACTGTACCACCCCCCATAAAATTTAATAAAATTAAGTTTTCAAATAAGATGAGAGCTGAGGATGATTCCAATGAAGCTCACAAGCCTTCCATTCTGGTAAGGCCACCAACGGAGACTGCAGACTCACATCGCAGCAAGAAAATTGTAATTAAGCAACTTAAGGACTCCACAAGTGTGGATGAAGGATTCTTGGATGGAAGCAGTGGCATGGAGTTCACGAAGACAAAGAAAATCAACGAATTGTCGTACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466666" ref_strand="+" ref_description="SGN-E466666 [cPRO-25-O10]">
      <seq>gcataaagcattgatctggaaaagactacaggaaaatctatgggttctactgatctcttggatcagccccagatcttctcaaagaaagccatccaaaaaagtggaacgaagaatgtgatggtcgaagttcatgaggatgataattccagttcaaaggccaaagttctgaaggtcaaatgtggttcaacagacaaacttcctgataaacctactcctgcgacctcacttaattctgacataccattgacttcagatgctgaaattggaactgtaccaccccccataaaatttaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="27487" stop="28378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27787" g_stop="28078" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E466666" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27787" e_stop="28078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAGCACTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTATTGATATCTTGGATCAGTCCCAGATCTTCTCAAAGAAA---ATCCAAAAAAGTGGAACCAAGAATCTGATGGTCGACGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGCTTCAACCGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATACCAGTGACTTCGGATGCTGAAATTGGAACTTTACCACCCCCCATAAAATTTAATA</genome_strand>
        <mrna_strand>GCATAAAGCATTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTACTGATCTCTTGGATCAGCCCCAGATCTTCTCAAAGAAAGCCATCCAAAAAAGTGGAACGAAGAATGTGATGGTCGAAGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGGTTCAACAGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATACCATTGACTTCAGATGCTGAAATTGGAACTGTACCACCCCCCATAAAATTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609491" ref_strand="+" ref_description="SGN-E609491 [25500]">
      <seq>gacagaaggcattagaagaacaggagaaattagcggcgattgaaagctatcaagacgccataagaagagagagggaggaagaagaacgcctaaaggaaaaaaagaagaaaaagaagaagactgaaatgagagatgattacttggatgattttcttcccagaagaaacgacagaaggataccagatcgagacagatcggtgaagcggagacaaactttcgagtccggaaggcatgctaaagagcatgcaccgccaacaaagcgccgaagagggggagaggttggtttgtcaaatattttagaagaaattgttgatacactgaagaacaatgtgaacnngtatcttanncctcttncttgaagccagtggcccgaaaggaagctccagattatcacaagtatgtaaagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="28139" stop="29935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28439" g_stop="28716" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28717" i_stop="29509" i_length="793">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29510" g_stop="29635" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="409" r_length="131" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E609491" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28439" e_stop="28716"/>
          <exon e_start="29510" e_stop="29635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAAGGCATTAGAAGAACAAGAGAAATTAGCGGCGATTGAAAGCTATCAAGACGCCATAAGAAGAGAAAGGGAGGAAGAAGAACGTCTTAAAGAAAAAAAGAAGAAAAAGAAGAAGACTGAAATAAGAGATGATTACTTGGATGATTTTCTTCCCAGAAGAAACGACAGAAGGATACCAGATCGAGACAGATCGGTGAAGCGGAGACAAACTTTCGAGTCTGGAAGGCATGCTAAAGAGCATGCACCACCAACAAAGCGCCGAAGAGGGGGAGAGGTAACTAAATCTATTATGCTTGTTTTTGTCTCATCTTCTGCAGGTAATAATAGTGATAGTCAATTACTATGTCCACAGATGCCACAGATCTAGATCAACCGTTACTATAGCCACAGATGCCACAGATCTAGATCATATTATCCTTCTTGCATTTTGTGTTATGTCCGAATGGTCTAACTGACCTTTCTCTCATGTTCTTGTTGACTAATTTGGTTGCATGGCGGTGTTCATAGAATTTTCCAATAAGAAGTGAATAGTACTGGGTAAGAGAATACTCGTCTAGGTACCGTCATGGTGGGTGGAAGTTTCTAATTAGTTCTCTTTTTCGAAAAACTGAGACTCATGCCTCCTTGTATGTGAAATAGAAAGGTAATAAGATAAAGGTCTACTTACTCTATAGGAATATAGATCGCTACTCTAGTAAGTGTTGTTTGAACAATCATTTAGTCAAACAATAACATACTGGCTGGTCTGGTTTTTCTGATACGGCTGATTGTCACATCTTAAGCAATATACATTTTCTGTATGCATAATTCTGTCATTATTGGTCAATTAGCTGCAGTTAGAAGTAGAACTGCAAGTCTTAAGCAATATACATTTTCTGTATGCATAATTCTGTCATTAGTGGTCAATTAACTGCAGTTAGAAGTAGAACTGCAAGATTTTAGCAAGAGAACCTCTGATCTTATTTGATCTGTTCATTCTAAGAGTTGCCTACTTCTTTTATAATACAAAGGGACAGTAGTACAGTAGTTTTTTCATTTAACTGAGATGTGGTTGAATTTGTTTGAAGGTTGGTTTGTCAAATATTTTAGAAGAAATTGTTGATACACTGAAGAACAATGTGAAC--GTATC--ATACCTCTT-CTTGAAGCCAGTGACCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAACGC</genome_strand>
        <mrna_strand>GACAGAAGGCATTAGAAGAACAGGAGAAATTAGCGGCGATTGAAAGCTATCAAGACGCCATAAGAAGAGAGAGGGAGGAAGAAGAACGCCTAAAGGAAAAAAAGAAGAAAAAGAAGAAGACTGAAATGAGAGATGATTACTTGGATGATTTTCTTCCCAGAAGAAACGACAGAAGGATACCAGATCGAGACAGATCGGTGAAGCGGAGACAAACTTTCGAGTCCGGAAGGCATGCTAAAGAGCATGCACCGCCAACAAAGCGCCGAAGAGGGGGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTTTGTCAAATATTTTAGAAGAAATTGTTGATACACTGAAGAACAATGTGAACNNGTATCTTANNCCTCTTNCTTGAAGCCAGTGGCCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410308" ref_strand="+" ref_description="SGN-E410308 [PPI-16-L19]">
      <seq>gaagagagagggaggaagaagaacgtctaaaggaaaaaaagaagaaaaagaagaagactgaaatgagagatgattacttggatgattttcttcccagaagaaacgacagaaggataccagatcgagacagatcggtgaagcggagacaaactttcgagtccggaaggcatgctaaagaacatgcaccgccaacaaagcgccgaagagggggagaggttggtttgtcaaatattttagaagaaattgttgatacactgaagaacaatgtgaacgtatcatacctcttcttgaaaccagtgacccgaaaggaagctccagattatcacaagtatgtaaagcgccctatggacctatctaccatcaaagagaaagccaggaaactggaatataaaaaccgcgggcaattcaggcatgatgtggcacagatcactatcaatgcacatttgtacaatgatgggcgcaacccaggtattcctccccttgcggatcagcttctagagatttgtgactacttgctggaagagaatgagtccatcttagctgaagctgaatctgcgatctaaaggatagatcttctagatgtgtcagttgcagccaccccaacaaatgtatcagataaacaagacgcgactggagggattgtatcntnactgtataatgagatttagtagctgatgattctgtgtatcgaccattttggtttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="28202" stop="30408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28502" g_stop="28716" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28717" i_stop="29509" i_length="793">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29510" g_stop="29849" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="555" r_length="340" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29850" i_stop="29954" i_length="105">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29955" g_stop="30108" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="706" r_length="151" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E410308" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28502" e_stop="28716"/>
          <exon e_start="29510" e_stop="29849"/>
          <exon e_start="29955" e_stop="30108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAAAGGGAGGAAGAAGAACGTCTTAAAGAAAAAAAGAAGAAAAAGAAGAAGACTGAAATAAGAGATGATTACTTGGATGATTTTCTTCCCAGAAGAAACGACAGAAGGATACCAGATCGAGACAGATCGGTGAAGCGGAGACAAACTTTCGAGTCTGGAAGGCATGCTAAAGAGCATGCACCACCAACAAAGCGCCGAAGAGGGGGAGAGGTAACTAAATCTATTATGCTTGTTTTTGTCTCATCTTCTGCAGGTAATAATAGTGATAGTCAATTACTATGTCCACAGATGCCACAGATCTAGATCAACCGTTACTATAGCCACAGATGCCACAGATCTAGATCATATTATCCTTCTTGCATTTTGTGTTATGTCCGAATGGTCTAACTGACCTTTCTCTCATGTTCTTGTTGACTAATTTGGTTGCATGGCGGTGTTCATAGAATTTTCCAATAAGAAGTGAATAGTACTGGGTAAGAGAATACTCGTCTAGGTACCGTCATGGTGGGTGGAAGTTTCTAATTAGTTCTCTTTTTCGAAAAACTGAGACTCATGCCTCCTTGTATGTGAAATAGAAAGGTAATAAGATAAAGGTCTACTTACTCTATAGGAATATAGATCGCTACTCTAGTAAGTGTTGTTTGAACAATCATTTAGTCAAACAATAACATACTGGCTGGTCTGGTTTTTCTGATACGGCTGATTGTCACATCTTAAGCAATATACATTTTCTGTATGCATAATTCTGTCATTATTGGTCAATTAGCTGCAGTTAGAAGTAGAACTGCAAGTCTTAAGCAATATACATTTTCTGTATGCATAATTCTGTCATTAGTGGTCAATTAACTGCAGTTAGAAGTAGAACTGCAAGATTTTAGCAAGAGAACCTCTGATCTTATTTGATCTGTTCATTCTAAGAGTTGCCTACTTCTTTTATAATACAAAGGGACAGTAGTACAGTAGTTTTTTCATTTAACTGAGATGTGGTTGAATTTGTTTGAAGGTTGGTTTGTCAAATATTTTAGAAGAAATTGTTGATACACTGAAGAACAATGTGAACGTATCATACCTCTTCTTGAAGCCAGTGACCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAACGCCCTATGGACCTATCTACCATCAAAGAGAAAGCCAGGAAACTGGAATATAAAAACCGTGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGATGGGCGCAACCCAGGTATTCCTCCCCTTGCGGATCAGCTTCTAGAGATTTGTGACTACTTGCTGGAAGAGAATGAGTCCATCTTAGCTGAAGCTGAATCTGGTATTGAGTGATGATACTTCATATTTGAACCTTGTTTCTGTTCGATTTTAAGTTCAATTAAGCAAGCTTTCATTGGTTACTCACAATCTAGTGTCTATTGTTCAGCGATCTAAAGGATAGATCTTCTAGATGTGTCAGTTGCAGCCACCCCAACATATGTATCAGATAAACAAGACGCGACTGAAGGGATTATTGTATCCTAACTGTATAATGAGATTTAGTAGCTGATGATTCTGTGTACCGACCATGTTGTTTTAAT</genome_strand>
        <mrna_strand>GAAGAGAGAGGGAGGAAGAAGAACGTCTAAAGGAAAAAAAGAAGAAAAAGAAGAAGACTGAAATGAGAGATGATTACTTGGATGATTTTCTTCCCAGAAGAAACGACAGAAGGATACCAGATCGAGACAGATCGGTGAAGCGGAGACAAACTTTCGAGTCCGGAAGGCATGCTAAAGAACATGCACCGCCAACAAAGCGCCGAAGAGGGGGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTTTGTCAAATATTTTAGAAGAAATTGTTGATACACTGAAGAACAATGTGAACGTATCATACCTCTTCTTGAAACCAGTGACCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAGCGCCCTATGGACCTATCTACCATCAAAGAGAAAGCCAGGAAACTGGAATATAAAAACCGCGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGATGGGCGCAACCCAGGTATTCCTCCCCTTGCGGATCAGCTTCTAGAGATTTGTGACTACTTGCTGGAAGAGAATGAGTCCATCTTAGCTGAAGCTGAATCTG.........................................................................................................CGATCTAAAGGATAGATCTTCTAGATGTGTCAGTTGCAGCCACCCCAACAAATGTATCAGATAAACAAGACGCGACTGGAGGG---ATTGTATCNTNACTGTATAATGAGATTTAGTAGCTGATGATTCTGTGTATCGACCATTTTGGTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468396" ref_strand="+" ref_description="SGN-E468396 [cSTB-3-F15]">
      <seq>gaatgaataaatgaagaagactgaaatgagagatgattaccttggatgattttcttcccagaagaaacgaccagaaggatacccagatcgagacagatcggtgaagcggagacaaactttcgagtccggaaggcatgctaaagagcatgcaccgccaacaaagcgccgaagagggggagaggttggtttgtcaaatattttagaagaaattgttgatacactgaagaacaatgtgaacgtatcttacctcttcttgaagccagtggcccgaaaggaagctccagattatcacaagtatgtaaagcgccctatggacctatctaccatcaaagagaaagccaggaaactggaatataaaaaccgtgggcaattcaggcatgatgtggcacagatcactatcaatgcacatttgtacaatgatgggcgcaacccaggtattcctccccttgcggatcagcttctagagatttgtgactacttgctggaagagaatgagtccatcttagctgaagctgaatctgcgatctaaaggatagatcttctagatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="28242" stop="30176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28538" g_stop="28716" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28717" i_stop="29509" i_length="793">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29510" g_stop="29849" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="521" r_length="340" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29850" i_stop="29954" i_length="105">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29955" g_stop="29984" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="551" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E468396" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28538" e_stop="28716"/>
          <exon e_start="29510" e_stop="29849"/>
          <exon e_start="29955" e_stop="29984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAGAAAAAGAAGAAGACTGAAATAAGAGATGATTA-CTTGGATGATTTTCTTCCCAGAAGAAACGA-CAGAAGGATA-CCAGATCGAGACAGATCGGTGAAGCGGAGACAAACTTTCGAGTCTGGAAGGCATGCTAAAGAGCATGCACCACCAACAAAGCGCCGAAGAGGGGGAGAGGTAACTAAATCTATTATGCTTGTTTTTGTCTCATCTTCTGCAGGTAATAATAGTGATAGTCAATTACTATGTCCACAGATGCCACAGATCTAGATCAACCGTTACTATAGCCACAGATGCCACAGATCTAGATCATATTATCCTTCTTGCATTTTGTGTTATGTCCGAATGGTCTAACTGACCTTTCTCTCATGTTCTTGTTGACTAATTTGGTTGCATGGCGGTGTTCATAGAATTTTCCAATAAGAAGTGAATAGTACTGGGTAAGAGAATACTCGTCTAGGTACCGTCATGGTGGGTGGAAGTTTCTAATTAGTTCTCTTTTTCGAAAAACTGAGACTCATGCCTCCTTGTATGTGAAATAGAAAGGTAATAAGATAAAGGTCTACTTACTCTATAGGAATATAGATCGCTACTCTAGTAAGTGTTGTTTGAACAATCATTTAGTCAAACAATAACATACTGGCTGGTCTGGTTTTTCTGATACGGCTGATTGTCACATCTTAAGCAATATACATTTTCTGTATGCATAATTCTGTCATTATTGGTCAATTAGCTGCAGTTAGAAGTAGAACTGCAAGTCTTAAGCAATATACATTTTCTGTATGCATAATTCTGTCATTAGTGGTCAATTAACTGCAGTTAGAAGTAGAACTGCAAGATTTTAGCAAGAGAACCTCTGATCTTATTTGATCTGTTCATTCTAAGAGTTGCCTACTTCTTTTATAATACAAAGGGACAGTAGTACAGTAGTTTTTTCATTTAACTGAGATGTGGTTGAATTTGTTTGAAGGTTGGTTTGTCAAATATTTTAGAAGAAATTGTTGATACACTGAAGAACAATGTGAACGTATCATACCTCTTCTTGAAGCCAGTGACCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAACGCCCTATGGACCTATCTACCATCAAAGAGAAAGCCAGGAAACTGGAATATAAAAACCGTGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGATGGGCGCAACCCAGGTATTCCTCCCCTTGCGGATCAGCTTCTAGAGATTTGTGACTACTTGCTGGAAGAGAATGAGTCCATCTTAGCTGAAGCTGAATCTGGTATTGAGTGATGATACTTCATATTTGAACCTTGTTTCTGTTCGATTTTAAGTTCAATTAAGCAAGCTTTCATTGGTTACTCACAATCTAGTGTCTATTGTTCAGCGATCTAAAGGATAGATCTTCTAGATGTGT</genome_strand>
        <mrna_strand>GAATGAA-TAAATGAAGAAGACTGAAATGAGAGATGATTACCTTGGATGATTTTCTTCCCAGAAGAAACGACCAGAAGGATACCCAGATCGAGACAGATCGGTGAAGCGGAGACAAACTTTCGAGTCCGGAAGGCATGCTAAAGAGCATGCACCGCCAACAAAGCGCCGAAGAGGGGGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTTTGTCAAATATTTTAGAAGAAATTGTTGATACACTGAAGAACAATGTGAACGTATCTTACCTCTTCTTGAAGCCAGTGGCCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAGCGCCCTATGGACCTATCTACCATCAAAGAGAAAGCCAGGAAACTGGAATATAAAAACCGTGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGATGGGCGCAACCCAGGTATTCCTCCCCTTGCGGATCAGCTTCTAGAGATTTGTGACTACTTGCTGGAAGAGAATGAGTCCATCTTAGCTGAAGCTGAATCTG.........................................................................................................CGATCTAAAGGATAGATCTTCTAGATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395270" ref_strand="+" ref_description="SGN-E395270 [TUS-46-O14]">
      <seq>ttcgagtctggaaggcatgctaaagagcatgcaccaccaacaaagcgccgaagagggggagaggttggtttgtcaaatattttagaagaaattgttgatacactgaagaacaatgtgaacgtatcatacctcttcttgaagccagtgacccgaaaggaagctccagattatcacaagtatgtaaaacgccctatggacctatctaccatcaaagagaaagccaggaaactggaatataaaaaccgtgggcaattcaggcatgatgtggcacagatcactatcaatgcacatttgtacaatgatgggcgcaacccaggtattcctccccttgcggatcagcttctagagatttgtgactacttgctggaagagaatgagtccatcttagctgaagctgaatctggtattgagtgatgatacttcatatttgagggggggggggggtctatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="28354" stop="30177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28654" g_stop="28716" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28717" i_stop="29509" i_length="793">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29510" g_stop="29899" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="453" r_length="390" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E395270" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28654" e_stop="28716"/>
          <exon e_start="29510" e_stop="29899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGTCTGGAAGGCATGCTAAAGAGCATGCACCACCAACAAAGCGCCGAAGAGGGGGAGAGGTAACTAAATCTATTATGCTTGTTTTTGTCTCATCTTCTGCAGGTAATAATAGTGATAGTCAATTACTATGTCCACAGATGCCACAGATCTAGATCAACCGTTACTATAGCCACAGATGCCACAGATCTAGATCATATTATCCTTCTTGCATTTTGTGTTATGTCCGAATGGTCTAACTGACCTTTCTCTCATGTTCTTGTTGACTAATTTGGTTGCATGGCGGTGTTCATAGAATTTTCCAATAAGAAGTGAATAGTACTGGGTAAGAGAATACTCGTCTAGGTACCGTCATGGTGGGTGGAAGTTTCTAATTAGTTCTCTTTTTCGAAAAACTGAGACTCATGCCTCCTTGTATGTGAAATAGAAAGGTAATAAGATAAAGGTCTACTTACTCTATAGGAATATAGATCGCTACTCTAGTAAGTGTTGTTTGAACAATCATTTAGTCAAACAATAACATACTGGCTGGTCTGGTTTTTCTGATACGGCTGATTGTCACATCTTAAGCAATATACATTTTCTGTATGCATAATTCTGTCATTATTGGTCAATTAGCTGCAGTTAGAAGTAGAACTGCAAGTCTTAAGCAATATACATTTTCTGTATGCATAATTCTGTCATTAGTGGTCAATTAACTGCAGTTAGAAGTAGAACTGCAAGATTTTAGCAAGAGAACCTCTGATCTTATTTGATCTGTTCATTCTAAGAGTTGCCTACTTCTTTTATAATACAAAGGGACAGTAGTACAGTAGTTTTTTCATTTAACTGAGATGTGGTTGAATTTGTTTGAAGGTTGGTTTGTCAAATATTTTAGAAGAAATTGTTGATACACTGAAGAACAATGTGAACGTATCATACCTCTTCTTGAAGCCAGTGACCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAACGCCCTATGGACCTATCTACCATCAAAGAGAAAGCCAGGAAACTGGAATATAAAAACCGTGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGATGGGCGCAACCCAGGTATTCCTCCCCTTGCGGATCAGCTTCTAGAGATTTGTGACTACTTGCTGGAAGAGAATGAGTCCATCTTAGCTGAAGCTGAATCTGGTATTGAGTGATGATACTTCATATTTGAACCTTGTTTCTGTTCGATTTTA</genome_strand>
        <mrna_strand>TTCGAGTCTGGAAGGCATGCTAAAGAGCATGCACCACCAACAAAGCGCCGAAGAGGGGGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTTTGTCAAATATTTTAGAAGAAATTGTTGATACACTGAAGAACAATGTGAACGTATCATACCTCTTCTTGAAGCCAGTGACCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAACGCCCTATGGACCTATCTACCATCAAAGAGAAAGCCAGGAAACTGGAATATAAAAACCGTGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGATGGGCGCAACCCAGGTATTCCTCCCCTTGCGGATCAGCTTCTAGAGATTTGTGACTACTTGCTGGAAGAGAATGAGTCCATCTTAGCTGAAGCTGAATCTGGTATTGAGTGATGATACTTCATATTTGAGGGGGGGGGGGGGTCTATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265828" ref_strand="+" ref_description="SGN-E265828 [cLEI-11-C24]">
      <seq>tcgagtctggaaggcatgctaaagagcatgcaccaccaacaaagcgccgaagagggggagaggttggtttgtcaaatattttataagaaattgttgatacactgaagaacaatgtgaacgtatcatacctcttcttgaagccagtgacccgaaaggaagcttcagattatcacaagtatgtaaaacgccctatggacctatctaccatcaaagagaaagccaggaaactggaatataaaaaccgtgggcaattcaggcatgatgtggcacagatcactatcaatgcacatttgtacaatgatgggcgcaacccaggtattcctccccttgcggatcagcttctagagatttgtgactacttgctggaagagaatgagtccatcttagctgaagctgaatctggtattgagtgatgatacttcatatttgaaccttgtttctgttcgattttaagttcaattaagcaagctttcattggttactcacaatctagtgtctattgttcagcgatctaaaggatagatcttctagatgtgtcaattgcagccaccccaacatatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="28355" stop="30310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28655" g_stop="28716" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28717" i_stop="29509" i_length="793">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29510" g_stop="30010" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="563" r_length="501" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E265828" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28655" e_stop="28716"/>
          <exon e_start="29510" e_stop="30010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTCTGGAAGGCATGCTAAAGAGCATGCACCACCAACAAAGCGCCGAAGAGGGGGAGAGGTAACTAAATCTATTATGCTTGTTTTTGTCTCATCTTCTGCAGGTAATAATAGTGATAGTCAATTACTATGTCCACAGATGCCACAGATCTAGATCAACCGTTACTATAGCCACAGATGCCACAGATCTAGATCATATTATCCTTCTTGCATTTTGTGTTATGTCCGAATGGTCTAACTGACCTTTCTCTCATGTTCTTGTTGACTAATTTGGTTGCATGGCGGTGTTCATAGAATTTTCCAATAAGAAGTGAATAGTACTGGGTAAGAGAATACTCGTCTAGGTACCGTCATGGTGGGTGGAAGTTTCTAATTAGTTCTCTTTTTCGAAAAACTGAGACTCATGCCTCCTTGTATGTGAAATAGAAAGGTAATAAGATAAAGGTCTACTTACTCTATAGGAATATAGATCGCTACTCTAGTAAGTGTTGTTTGAACAATCATTTAGTCAAACAATAACATACTGGCTGGTCTGGTTTTTCTGATACGGCTGATTGTCACATCTTAAGCAATATACATTTTCTGTATGCATAATTCTGTCATTATTGGTCAATTAGCTGCAGTTAGAAGTAGAACTGCAAGTCTTAAGCAATATACATTTTCTGTATGCATAATTCTGTCATTAGTGGTCAATTAACTGCAGTTAGAAGTAGAACTGCAAGATTTTAGCAAGAGAACCTCTGATCTTATTTGATCTGTTCATTCTAAGAGTTGCCTACTTCTTTTATAATACAAAGGGACAGTAGTACAGTAGTTTTTTCATTTAACTGAGATGTGGTTGAATTTGTTTGAAGGTTGGTTTGTCAAATATTTTAGAAGAAATTGTTGATACACTGAAGAACAATGTGAACGTATCATACCTCTTCTTGAAGCCAGTGACCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAACGCCCTATGGACCTATCTACCATCAAAGAGAAAGCCAGGAAACTGGAATATAAAAACCGTGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGATGGGCGCAACCCAGGTATTCCTCCCCTTGCGGATCAGCTTCTAGAGATTTGTGACTACTTGCTGGAAGAGAATGAGTCCATCTTAGCTGAAGCTGAATCTGGTATTGAGTGATGATACTTCATATTTGAACCTTGTTTCTGTTCGATTTTAAGTTCAATTAAGCAAGCTTTCATTGGTTACTCACAATCTAGTGTCTATTGTTCAGCGATCTAAAGGATAGATCTTCTAGATGTGTCAGTTGCAGCCACCCCAACATATGTA</genome_strand>
        <mrna_strand>TCGAGTCTGGAAGGCATGCTAAAGAGCATGCACCACCAACAAAGCGCCGAAGAGGGGGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTTTGTCAAATATTTTATAAGAAATTGTTGATACACTGAAGAACAATGTGAACGTATCATACCTCTTCTTGAAGCCAGTGACCCGAAAGGAAGCTTCAGATTATCACAAGTATGTAAAACGCCCTATGGACCTATCTACCATCAAAGAGAAAGCCAGGAAACTGGAATATAAAAACCGTGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGATGGGCGCAACCCAGGTATTCCTCCCCTTGCGGATCAGCTTCTAGAGATTTGTGACTACTTGCTGGAAGAGAATGAGTCCATCTTAGCTGAAGCTGAATCTGGTATTGAGTGATGATACTTCATATTTGAACCTTGTTTCTGTTCGATTTTAAGTTCAATTAAGCAAGCTTTCATTGGTTACTCACAATCTAGTGTCTATTGTTCAGCGATCTAAAGGATAGATCTTCTAGATGTGTCAATTGCAGCCACCCCAACATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378477" ref_strand="+" ref_description="SGN-E378477 [TUS-46-O14]">
      <seq>ggaaggcatgctaaagagcatgcacctccaacaaagcgccgaagagggggagaggttggtttgtcaaatattttagaagaaattgttgatacactgaagaacaatgtgaacgtatcatacctcttcttgaagccagtgacccgaaaggaagctccagattatcacaagtatgtaaaacgccctatggacctatctaccatcnaagagaaaagccaggaactggaatataaaaaccgtgggcaattcaggcatgatgtggcacagatcactatcaatgcacatttgtacaatgatggggcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="28363" stop="30055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28663" g_stop="28716" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28717" i_stop="29509" i_length="793">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29510" g_stop="29755" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="301" r_length="247" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E378477" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28663" e_stop="28716"/>
          <exon e_start="29510" e_stop="29755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGCATGCTAAAGAGCATGCACCACCAACAAAGCGCCGAAGAGGGGGAGAGGTAACTAAATCTATTATGCTTGTTTTTGTCTCATCTTCTGCAGGTAATAATAGTGATAGTCAATTACTATGTCCACAGATGCCACAGATCTAGATCAACCGTTACTATAGCCACAGATGCCACAGATCTAGATCATATTATCCTTCTTGCATTTTGTGTTATGTCCGAATGGTCTAACTGACCTTTCTCTCATGTTCTTGTTGACTAATTTGGTTGCATGGCGGTGTTCATAGAATTTTCCAATAAGAAGTGAATAGTACTGGGTAAGAGAATACTCGTCTAGGTACCGTCATGGTGGGTGGAAGTTTCTAATTAGTTCTCTTTTTCGAAAAACTGAGACTCATGCCTCCTTGTATGTGAAATAGAAAGGTAATAAGATAAAGGTCTACTTACTCTATAGGAATATAGATCGCTACTCTAGTAAGTGTTGTTTGAACAATCATTTAGTCAAACAATAACATACTGGCTGGTCTGGTTTTTCTGATACGGCTGATTGTCACATCTTAAGCAATATACATTTTCTGTATGCATAATTCTGTCATTATTGGTCAATTAGCTGCAGTTAGAAGTAGAACTGCAAGTCTTAAGCAATATACATTTTCTGTATGCATAATTCTGTCATTAGTGGTCAATTAACTGCAGTTAGAAGTAGAACTGCAAGATTTTAGCAAGAGAACCTCTGATCTTATTTGATCTGTTCATTCTAAGAGTTGCCTACTTCTTTTATAATACAAAGGGACAGTAGTACAGTAGTTTTTTCATTTAACTGAGATGTGGTTGAATTTGTTTGAAGGTTGGTTTGTCAAATATTTTAGAAGAAATTGTTGATACACTGAAGAACAATGTGAACGTATCATACCTCTTCTTGAAGCCAGTGACCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAACGCCCTATGGACCTATCTACCATCAAAGAG-AAAGCCAGGAAACTGGAATATAAAAACCGTGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGAT-GGGCGC</genome_strand>
        <mrna_strand>GGAAGGCATGCTAAAGAGCATGCACCTCCAACAAAGCGCCGAAGAGGGGGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTTTGTCAAATATTTTAGAAGAAATTGTTGATACACTGAAGAACAATGTGAACGTATCATACCTCTTCTTGAAGCCAGTGACCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAACGCCCTATGGACCTATCTACCATCNAAGAGAAAAGCCAGG-AACTGGAATATAAAAACCGTGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGATGGGGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252066" ref_strand="+" ref_description="SGN-E252066 [cLEG-8-B2]">
      <seq>atcatacctcttcttgaagccagtgacccgaaaggaagctccagattatcacaagtatgtaaaacgccctatggacctatctaccatcaaagagaaagccaggaaactggaatataaaaaccgtgggcaattcaggcatgatgtggcacagatcactatcaatgcacatttgtacaatgatgggcgcaacccaggtattcctccccttgcggatcagcttctagagatttgtgactacttgctggaagagaatgagtccatcttagctgaagctgaatctggtattgagtgatgatacttcatatttgaaccttgtttctgttcgattttaagttcaattaagcaagctttcattggttactcacaatctagtgtctattgttcagcgatctaaaggatagatcttctagatgtgtcagttgcagccaccccaacatatgtatcagataaacaagacgcgactgaagggattattgtatcctaactgtataatgagatttagtagctgatgattctgtgtaccgaccatgttgttttaatccatggtcaaggaaggcaacgcgctgatgggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="29269" stop="30442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29569" g_stop="30142" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E252066" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29569" e_stop="30142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATACCTCTTCTTGAAGCCAGTGACCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAACGCCCTATGGACCTATCTACCATCAAAGAGAAAGCCAGGAAACTGGAATATAAAAACCGTGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGATGGGCGCAACCCAGGTATTCCTCCCCTTGCGGATCAGCTTCTAGAGATTTGTGACTACTTGCTGGAAGAGAATGAGTCCATCTTAGCTGAAGCTGAATCTGGTATTGAGTGATGATACTTCATATTTGAACCTTGTTTCTGTTCGATTTTAAGTTCAATTAAGCAAGCTTTCATTGGTTACTCACAATCTAGTGTCTATTGTTCAGCGATCTAAAGGATAGATCTTCTAGATGTGTCAGTTGCAGCCACCCCAACATATGTATCAGATAAACAAGACGCGACTGAAGGGATTATTGTATCCTAACTGTATAATGAGATTTAGTAGCTGATGATTCTGTGTACCGACCATGTTGTTTTAATCCATGGTCAAGGAAGGCAACGCGCTGATGGGTGT</genome_strand>
        <mrna_strand>ATCATACCTCTTCTTGAAGCCAGTGACCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAACGCCCTATGGACCTATCTACCATCAAAGAGAAAGCCAGGAAACTGGAATATAAAAACCGTGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGATGGGCGCAACCCAGGTATTCCTCCCCTTGCGGATCAGCTTCTAGAGATTTGTGACTACTTGCTGGAAGAGAATGAGTCCATCTTAGCTGAAGCTGAATCTGGTATTGAGTGATGATACTTCATATTTGAACCTTGTTTCTGTTCGATTTTAAGTTCAATTAAGCAAGCTTTCATTGGTTACTCACAATCTAGTGTCTATTGTTCAGCGATCTAAAGGATAGATCTTCTAGATGTGTCAGTTGCAGCCACCCCAACATATGTATCAGATAAACAAGACGCGACTGAAGGGATTATTGTATCCTAACTGTATAATGAGATTTAGTAGCTGATGATTCTGTGTACCGACCATGTTGTTTTAATCCATGGTCAAGGAAGGCAACGCGCTGATGGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745837" ref_strand="+" ref_description="SGN-E745837 [GI|47105033]">
      <seq>gaaactgttaaaactaataaagacagtgttcagttcttgagagagaaagagaaatctcttaggttcaactaaagtttcaagaattaccaatcagggaaaaaagaaggtatttgtctaaatgcagactaggtatatggagaggacaaaatctatgaagaggagcttggagggtgatgatgaacagcctcctgagcgtaaaagacctgctttagctagtgttattgtggaagctctcaaggtggatagtcttcaaaagctctgctcatctttggaaccgattcttcggagagttgttagtgaagaggtggaacgagcattggctaagttaggccctgccagaattgctggaaggtcatctcctaagagaattgaagggcccgatggaagtaacttgcagcttcagtttaggtctaggctatctttgcctctgttcactggaggcaaagtagaaggagagcatggtgctgctatccatgttgtcttaattgacacaactactggccatcttgtgactgctggtcctgaatcatgtataaaactggacgttgttgtgctagaaggtgatttcaacaatgaagaagatgaaggatggacacaagaagaatttgacggtcatgttgttaaagagcgtgaaggaaagagacctcttttaactggtgacttgcaaattacactcaaggaaggcgttggaactttgggggatctcacatttacagacaattcaagttggataaggagcaggaagttcagacttggcatgaaagttgcttctggatattgtgaaggagtacgcatacgagaagccaagactgaggctttcactgttaaagatcaccgtggagaattgtacaagaaacattatccaccagctctaaatgatgatgtctggagattggagaagattggcaaggatggttctttccacaagaggctaaacaaggccgggatatttactgttgaagacttccttaggcttgtggtccgagacccacagaaactaagaagtatccttggaagtggtatgtcaaataagatgtgggaggctctaatagagcatgcaaagacctgtgtcttgagtgggaagctttatgtctattattctgatgattcgaggaacgttggtgttgttttcaacaatatttatgagctgaatggccttatagctggtgaacaatactattcggcagattcactttcagacagccagaaggtatacgtagattctttggtcaagaaggcatatgataattggaatcaagtcgttgaatatgatggcaagtcatttctgaacatcaagcaaaatcaaaatccaagctcttctaggaacgagcttcctgttgggccagtggattaccccaacaccttggttaatcagcttccgcagtcacgccatcctgttccagttcaatccgagcaatcttctatggatcccaacttgctaattggaggttcaggttacaatgacaacatggttgctaggatgcctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatttgcgcctcagcaccaaataaccagcagtcatcagctccagagtacgagaaatgacaacaatgttggcctggctcttggtcctccacaatcatcttcattccagacaattacctcatctctcccacaaaccaatcttaatccttttgatgattggtcgcacaacagggacaagggagttgacgaattcttgtctgaggaggaaattcgaatgagaagcaatgaaattcttgagaatgatgatatgcaacattagctaagacttttcagcatgggaggccatggttctataaatgtgcctgaagatggatatggtttcccatctttcatgccttcgccatctcctagtttcagttatgatgaagaccgcacacggccaggaaaagctgttgttggttggctgaaaattaaggctgcaatgaggtgggggttctttgtgcggaagaaggcagctgagaggcgtgcacagctcgtggaactggatgatgaataaaatctggtgtggaaacattagggcatttagacttaaccgtcgaccatttgaataactattcacaaggccgtggtcatgcaggcccgagtaattagctttcgactctagacggtatattttccgagggattagtcaattcgattgtttttcttttttcatgtacagaagcctgtacagtaaattctcttttaacactctcattgttaactccatcgtgcttactctctttatctgtttcaagatgtaatgtaatgtataagtcctgcagacccaagggaaatatgctttcaagaacacctgtgtgttgaattctatatgaacttttatggtagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="31427" stop="39515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31726" g_stop="31819" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31820" i_stop="32031" i_length="212">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32032" g_stop="32153" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="216" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32154" i_stop="32743" i_length="590">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32744" g_stop="32819" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="292" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32820" i_stop="33544" i_length="725">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33545" g_stop="33603" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="351" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33604" i_stop="35966" i_length="2363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35967" g_stop="36460" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="845" r_length="494" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36461" i_stop="36544" i_length="84">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36545" g_stop="36705" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="1006" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36706" i_stop="36808" i_length="103">
            <donor d_prob="0.248" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36809" g_stop="37012" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1007" r_stop="1210" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37013" i_stop="37247" i_length="235">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="37248" g_stop="37485" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1211" r_stop="1448" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="37486" i_stop="38296" i_length="811">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="38297" g_stop="39214" g_length="918"/>
          <reference_exon_boundary r_type="cDNA" r_start="1449" r_stop="2366" r_length="918" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2367" polyA_stop="2379"/>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E745837" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2366</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31726" e_stop="31819"/>
          <exon e_start="32032" e_stop="32153"/>
          <exon e_start="32744" e_stop="32819"/>
          <exon e_start="33545" e_stop="33603"/>
          <exon e_start="35967" e_stop="36460"/>
          <exon e_start="36545" e_stop="36705"/>
          <exon e_start="36809" e_stop="37012"/>
          <exon e_start="37248" e_stop="37485"/>
          <exon e_start="38297" e_stop="39214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTGTTAAAACTAATAAAGACAGTGTTCAGTTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAGGTGAATTTTACTGAAAACCCCACTTGTAAAGTTGTGATCTTTATGGATATTATGTGGATATTTTTTTTGTGTGTAAATAAATTAGGGTTTTGATGTGGGGATCTTGAATTTTGTGTATTTGGGTGTTGTGGGAAATTTTCTTGAATGAACTTAAAGATCTGTTGGATTGTTTTGTTGATTGTTGTTTGTTTTGTTATTTGTGGTGAATTTAGGGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAGGTAAAGCTTTGTAACTTAATTTTTCTTGAATTTGAGTGATTTTTTTTGTTAATTTTGGTACATGAAGTTGGTCACTTGTGGGATTTCACTTAGGTATGTTGTTGTTGTTACATGAAGGGTTATTTGCTAGTTATTTAACTTGAATCTGTGCTAAGTCTATCACTTTGGATGTTTTATGCAGAAACTGAAATTTATCATTGTAATTGTTGAAAGGTTAATCCTGTTGAAGTAAAAGTTAGAATGTTTAATCCTGTTGAAGTAAAAATTTATCACAGTTTGACCAATGTGTATGGGTTAGTATATAGGAAACAATATACTAACAAGCAACATGTATTTTAACGATTCTCTTTCTGCTGTGTTTTCTTGTTATTTTGGGTTTCTTCTTCTTTTAATGGGGAAGGCTTTTAATGGGCGATGCTCTGTCAGTTAAAGCGATGGGCTCTGGAGACAACTAAGTACATACTTTTGTGGCGTTACTTACTTGTGGTTTTTCCTCACATTGCTAAAATAGTCAACTACAGAAGTTTACCTGTATGTTTTTTTTCTCTTCTTAAAAGAAATTTGAGATTATCAAATGATATTTTATGCAGTGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTTGTAAGATATATAACATTAGGATTTATTTATTTTCCTGTCATTCCTTTCATAATCTTCAATTGGTTGATAGTGTCATCCTGCTAGGAAATATGTTTCCACATTAAGTTTATCATCTATGTAAAAGAAAGTCTGTTTTGGAGGTCAGGTCTCCATGCTTTTTTGTTGCATCATAATTTTTTGCTCTTTTTGTTTTTATGTGGAATTTGAACTTGGGAATTCATCTTGACCAGTTGCCGATATTTTCTCTGATAAGGGTTATTTAGTGGGAAATCTATTTGTTCTTTCTTTTATGTTTAATATTGTACCTGTTGTATTATTCTATTATATGTTATATCACACTTTCCCTATTATTTGCTATTACTTGGTTGCTATGTCTTGTTTAATGTTGTCTTATCCTTTTCAAATTGCTTTGTTATGCGTTACTGAGCTGAGGGTCTTTCAGAAACAACCTCTCTATCTCTACGAGATAGGATAAGGTCTGTGTATTCTCTACCCTCCCAGACCCCACTGTGGGAATACAGCGGATATGATGTTGTTGTTATTGTATAGTTGATTATGCTAGTAGGGTGAAAAGATGAATGGCCCTTCACATGTAACTACATATAGTGTGTACATGTATTTGTATAAAATCCAATATTCTAACATGTGGTGAGAATTATCTTTTGTGGTTTCAGTTACTTGATGTCTAGGCTTCTTATTGGATATTCACCATTTGATCTGAACAGGTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAGGTTAGGCTATGAACTATGTTGTTTTGTATCCAAGTCTTGTTTTTTTCTTATGGACACCATTTGGAATTTTTTTTGCTTTTTTATGCTTCTAGGTGGAGAGAATTTCTTCCTATTTTATTGAAAAAGACAGAATAGCTAATTAGACACCCTTAAGTTGCACTAGATTGTGTTCCCGCCCCCCAGCTTTACAGGATTTCATTTAGGCAAGTATGTGTTCAATATTAGTGTTTTTAACCCTTTTGACCACCCTGTGTGGTCCTTGATCACTATCCACATGAGATAATATGCCAGACCATCATCTATATTTACAAAAGCAATTATCCATCCCCATTTTTTCGTTCCTTATCTTCCCCATCCCTCTAAGTCATTCCCATATCTCTTCCCCATCCACCATCACCTCGCACCACTACCCACCTCTAGCAACTTCTTGAAATCAAAATACTTTTAGATCTTTGAATTTGATTCACTGTTGATAACAATGCATTGTGGGTCATAAAAAAGATTATTTGATGGATTAGAAATCAACAAGGTATGAGGAAATTTTGACTTGAATCCTTCTCTAGCTGAGAGAGATGAAGTCATGTAGATCATTTGGACCTTGTGGTTATATTGCACAGTATCTGTGCATTCATGTTATTGATTTATCAAAAAAGATTAAAGACAGATTCTTGTAGAATTTTCAAGGATCCTAAATAAGTTGGTTCAATCTTTGGTCTTAGCTTAGTACCTTTTTTCTACAAATACACAGTTCAGCTGCAGTGTGCATTATGTTGTGGTCCTTTTTCTGAACATGGAGTGATGCTTATTATCTAATTTAAAGAAGAGTATTCCAACTATGTGCTACAATAATCTATACAAAGTTGTGTGTTCTTTCCTAGTTGTGCACGTTGAATGGAATTTGGAGGATATTAAGCTTATAACTACATTAAAAAAAAAGATTTTGGAGGACATGTGTTCCTTTTGTCTACCTTGACTATTCCACTGGGCACTTGTATCCTCTTGGAAACTCTGTCCAGCGTGTTTAAGCACAATTGGAAGAAATTACCCTGTATATATGCCTCTGCTGGAACTGGAAGACAGAGACATTGCGGTTCCAGTTTCATTGACCACCTGGAACCTGGCCATAAGTCAACCTCGGTGCTTACATGTGTTAAAATACCTTATTCTGATTTCACCATAATGGATGGATGTGATTCAACCACGTCACAAAAATTGTACCTGTTTGAAAACACCGAGTAAAGAAAATGTTAAAACTTGTATTTGGTTCTTTAGTATCTCATACCCTTTTTTAGTTTTACCCGGAGTGATTTTATTTTGAGTGCTTTTATGATGTTGGGTAAGGAACTGTTGGAGCCCCCATGCAAAAAGAAAACATAAATCCCTGCTTTCAAGCATGAACGCATCTACAAAGGGAAAAAGAAATGGAAAATAGAACATAGTCTGTATTTAGTTTTGTTTATGTTATCTCTTGGAAGGTCTATTAAACCTTGTTTAAGTTATATCTGTAAACATTTCATGAGTAAATGGCTTCCATTCTTGTCGAAACATAAGTTGGTAGGGCTGCTCAAAACATAAAACTAAAAAATAAACAATATTGGACAAGATGTATGGACTATGTGATTAAACTGGATATGTTGTTGGACAATATGTATAAAAAATATGTACATTATTTGAGTATTGCATATCAGCTAGTTGAGGAGATTGGGGTTCAAAATCCTAACTGAGACAGAAAATATCTGGTGATTTCTTTCATCTTCCTAGGCATTGGACAGGGTTACTCGGTATTTATGGTGGTGGAAGGTAGTGGGTACCTGGTGGAATAGTTGAGGTGGATGCAAGCTGGTATTTACATTATATAATATAAAATGAGCACGTCTAATGAGGCAGTTTCAAATATGTGATTTCTGCATTGCATTGTCTTGTTTTTGTTCATTCTTCTTTTATGCTTACAAAAAGCAGACGAGGGAGTATGCTAAGCTTCTTTCTTTTGCGTGCATATTCACTTTCCAAGCAAATCCATGATATGAGAAACACAAATAGTTTATGCACCTCCGGGCTCTGGACATATATTTTTGTGCTACTACTATCTGAAGTTTCTTGGTAAATCTTAAGCATATCAAGGTTGGATCAAGAAGATGTAAGAATTTCTGGTCATATGCAATCAAAATAGGATGTACTGTATGATAATTTTAACCTTGTCAAAAAAGTATGTATACTACTAAATTTATTGATGTTTCACTGAATATGCAATGTAGTTTTTAGAAGATTCCAAAAAAGTATGTTTATTGCTAAATTTATTGATGTTTCACTGAATATGCATTGTAGTTTTCAGAAGATGCCATCCTAAAATCTTCAGGTTTCAGGTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGACCTCTTTTAACTGGTGACTTGCAAATTACACTCAAGGAAGGCGTTGGAACTTTGGGGGATCTCACATTTACAGACAATTCAAGTTGGATAAGGAGCAGGAAGTTCAGACTTGGCATGAAAGTTGCTTCTGGATATTGTGAAGGAGTACGCATACGAGAAGCCAAGACTGAGGCTTTCACTGTTAAAGATCACCGTGGAGAATGTAGGCTGCTTAGTCTAAACTTTTTGTTGTTACTCTTCTCTATTCTACTGTTATTGACTCTGTCTGAACTTCTTACTCCTGCAGTGTACAAGAAACATTATCCACCAGCTCTAAATGATGATGTCTGGAGATTGGAGAAGATTGGCAAGGATGGTTCTTTCCACAAGAGGCTAAACAAGGCCGGGATATTTACTGTTGAAGACTTCCTTAGGCTTGTGGTCCGAGACCCACAGAAACTAAGAAGTGTGAGTGTATAGTGAGATATAACAAGGAAAATGAAAAAAATAGATATATTTTAACTTAACATTTCATTGCACTTTGTCTTCAATCTGACTTGTATTTCGGCAGATCCTTGGAAGTGGTATGTCAAATAAGATGTGGGAGGCTCTAATAGAGCATGCAAAGACCTGTGTCTTGAGTGGGAAGCTTTATGTCTATTATTCTGATGATTCGAGGAACGTTGGTGTTGTTTTCAACAATATTTATGAGCTGAATGGCCTTATAGCTGGTGAACAATACTATTCGGCAGATTCACTTTCAGACAGCCAGAAGGTTGTTTATTTTCTTTTATATACTGTTCCTTTGATTTTGAGTTCTCTTTGGGGTTGATATTATTGGATTTCTAACATACTGTGTTAACTCTCTAAGCTATCAGCCTGGTCATTCAACTGACTTTTTCAAAATCTAGAATTGCAATCGAATTTGAAGTGTATTTCATTTAATTGTGGTTCTTACCTTTTGATAAAGAATGTGCCAGCTCTTATATGGACTTTAAATGTTCTTGTAGGTATACGTAGATTCTTTGGTCAAGAAGGCATATGATAATTGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAGGTAACCTGTTAATTTCAAAATTTTTATACTTCTATTGGTGGTAATCAGGGAGTGGTTATCTTCTTTCTTTCGAATAGTTCTGTTTGTTTCATTGCTTTGCCTGGTCTATGAGTCATTGCTGGTATCCTTAGCTGTAATTTGGCTGCTACACATACCATCAATGACTCTTGTACTTTGGCCACTCCCCTCATTTTCATTTGTTTTTGCTTTACAAGCTACATTCGCCGATAGCATTTGTGGAAACGATGTTTCTTAATCGAGAATGTGCAGTGATTTGGAAGGTTGCAGAGTTGTGACAATGGATTGTAGACTAAAAGGAACTTGTCTAATGGATTGTTAAAATGTAATGAGGAAATATTGTTGTGATGTACCGAGACCTTACCCCGTGCCTTTTTGAGGTTGACAGACTGTTTTTAAGAGATCCTTGACTCAAAAGGAAAGTATACTCCACAAGAATAAAAGAAAAGAGACATCAAAGTAGCAAGATACAAACAAATGCTACGACCGCCAGTAATATGAATACTACAAAGAGGACAAGAGGAGACCAGCTCACTCCCTCTCACACAGAAAATGACGACACTCATCTACTTACTAATCTTCTACCCTAATCCTCAACCTCCACACTTTCCTATCTAAAGTCATGTCCTCAGTCAAATGAATTGTGTCATGTCCTATTTGATCGTGTCTGTAGTTTGGTTTCTTAGACTCTTGGAGACCTTTTGTGGTTAAGCTCTCTCTTTCTCCCTTTCCAAACTTATCCTCTGCACTATAAATATCATAATACTGTCATCTTTTAATATTGGTGCAACAGGTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTAACCATCGACCATTTGAATAACTATTCACAAGGCCGTGGTCATGCAGGCCCGAGTAATTAGCTTTCGACTCTAGACGGTATATTTTCCGAGGGATTAGTCAATTCGATTGTTTTTCTTTTTTCATGTACAGAAGCCTGTACAGTAAATTCTCTTTTAACACTCTCATTGTTAACTCCATCGTGCTTACTCTCTTTATCTGTTTCAAGATGTAATGTAATGTATAAGTCCTGCAGACCCAAGGGAAATATGCTTTCAAGAACACCTGTGTGTTGAATTCTATATGAACTTTTATGGTAAAA</genome_strand>
        <mrna_strand>GAAACTGTTAAAACTAATAAAGACAGTGTTCAGTTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAG....................................................................................................................................................................................................................GGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGACCTCTTTTAACTGGTGACTTGCAAATTACACTCAAGGAAGGCGTTGGAACTTTGGGGGATCTCACATTTACAGACAATTCAAGTTGGATAAGGAGCAGGAAGTTCAGACTTGGCATGAAAGTTGCTTCTGGATATTGTGAAGGAGTACGCATACGAGAAGCCAAGACTGAGGCTTTCACTGTTAAAGATCACCGTGGAGAAT....................................................................................TGTACAAGAAACATTATCCACCAGCTCTAAATGATGATGTCTGGAGATTGGAGAAGATTGGCAAGGATGGTTCTTTCCACAAGAGGCTAAACAAGGCCGGGATATTTACTGTTGAAGACTTCCTTAGGCTTGTGGTCCGAGACCCACAGAAACTAAGAAGT.......................................................................................................ATCCTTGGAAGTGGTATGTCAAATAAGATGTGGGAGGCTCTAATAGAGCATGCAAAGACCTGTGTCTTGAGTGGGAAGCTTTATGTCTATTATTCTGATGATTCGAGGAACGTTGGTGTTGTTTTCAACAATATTTATGAGCTGAATGGCCTTATAGCTGGTGAACAATACTATTCGGCAGATTCACTTTCAGACAGCCAGAAG...........................................................................................................................................................................................................................................GTATACGTAGATTCTTTGGTCAAGAAGGCATATGATAATTGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGAAATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTAGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTAACCGTCGACCATTTGAATAACTATTCACAAGGCCGTGGTCATGCAGGCCCGAGTAATTAGCTTTCGACTCTAGACGGTATATTTTCCGAGGGATTAGTCAATTCGATTGTTTTTCTTTTTTCATGTACAGAAGCCTGTACAGTAAATTCTCTTTTAACACTCTCATTGTTAACTCCATCGTGCTTACTCTCTTTATCTGTTTCAAGATGTAATGTAATGTATAAGTCCTGCAGACCCAAGGGAAATATGCTTTCAAGAACACCTGTGTGTTGAATTCTATATGAACTTTTATGGTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322540" ref_strand="+" ref_description="SGN-E322540 [cTOB-26-L3]">
      <seq>aaactgttaaaactaataaagacagtgttcagttcttgagagagaaagagaaatctcttaggttcaactaaagtttcaagaattaccaatcagggaaaaaagaaggtatttgtctaaatgcagactaggtatatggagaggacaaaatctatgaagaggagcttggagggtgatgatgaacagcctcctgagcgtaaaagacctgctttagctagtgttattgtggaagctctcaaggtggatagtcttcaaaagctctgctcatcnttggaaccgattcttcggagaagtgttagtgaagaagtggaacgagcattggctaagttaggccctgccagaattgctggaaggtcatctccctagagatttgaaggggccgatggaagtaacttgcagcttcagtttaggtctaggctatctttgcctctgntcactggaggcaaagtagaaggagagcatggtgctgctatccatgttgtcttaattgacancactactggccatcttgtgactgctggtcctgaatcatgtantaaactggtgacttgcaaatacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="31427" stop="36590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31727" g_stop="31819" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31820" i_stop="32031" i_length="212">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32032" g_stop="32153" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="215" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32154" i_stop="32743" i_length="590">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32744" g_stop="32819" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="291" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32820" i_stop="33544" i_length="725">
            <donor d_prob="0.928" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33545" g_stop="33603" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="350" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33604" i_stop="35966" i_length="2363">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35967" g_stop="36154" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="538" r_length="188" r_score="0.952"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36155" i_stop="36269" i_length="115">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36270" g_stop="36290" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="558" r_length="20" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E322540" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31727" e_stop="31819"/>
          <exon e_start="32032" e_stop="32153"/>
          <exon e_start="32744" e_stop="32819"/>
          <exon e_start="33545" e_stop="33603"/>
          <exon e_start="35967" e_stop="36154"/>
          <exon e_start="36270" e_stop="36290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGTTAAAACTAATAAAGACAGTGTTCAGTTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAGGTGAATTTTACTGAAAACCCCACTTGTAAAGTTGTGATCTTTATGGATATTATGTGGATATTTTTTTTGTGTGTAAATAAATTAGGGTTTTGATGTGGGGATCTTGAATTTTGTGTATTTGGGTGTTGTGGGAAATTTTCTTGAATGAACTTAAAGATCTGTTGGATTGTTTTGTTGATTGTTGTTTGTTTTGTTATTTGTGGTGAATTTAGGGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAGGTAAAGCTTTGTAACTTAATTTTTCTTGAATTTGAGTGATTTTTTTTGTTAATTTTGGTACATGAAGTTGGTCACTTGTGGGATTTCACTTAGGTATGTTGTTGTTGTTACATGAAGGGTTATTTGCTAGTTATTTAACTTGAATCTGTGCTAAGTCTATCACTTTGGATGTTTTATGCAGAAACTGAAATTTATCATTGTAATTGTTGAAAGGTTAATCCTGTTGAAGTAAAAGTTAGAATGTTTAATCCTGTTGAAGTAAAAATTTATCACAGTTTGACCAATGTGTATGGGTTAGTATATAGGAAACAATATACTAACAAGCAACATGTATTTTAACGATTCTCTTTCTGCTGTGTTTTCTTGTTATTTTGGGTTTCTTCTTCTTTTAATGGGGAAGGCTTTTAATGGGCGATGCTCTGTCAGTTAAAGCGATGGGCTCTGGAGACAACTAAGTACATACTTTTGTGGCGTTACTTACTTGTGGTTTTTCCTCACATTGCTAAAATAGTCAACTACAGAAGTTTACCTGTATGTTTTTTTTCTCTTCTTAAAAGAAATTTGAGATTATCAAATGATATTTTATGCAGTGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTTGTAAGATATATAACATTAGGATTTATTTATTTTCCTGTCATTCCTTTCATAATCTTCAATTGGTTGATAGTGTCATCCTGCTAGGAAATATGTTTCCACATTAAGTTTATCATCTATGTAAAAGAAAGTCTGTTTTGGAGGTCAGGTCTCCATGCTTTTTTGTTGCATCATAATTTTTTGCTCTTTTTGTTTTTATGTGGAATTTGAACTTGGGAATTCATCTTGACCAGTTGCCGATATTTTCTCTGATAAGGGTTATTTAGTGGGAAATCTATTTGTTCTTTCTTTTATGTTTAATATTGTACCTGTTGTATTATTCTATTATATGTTATATCACACTTTCCCTATTATTTGCTATTACTTGGTTGCTATGTCTTGTTTAATGTTGTCTTATCCTTTTCAAATTGCTTTGTTATGCGTTACTGAGCTGAGGGTCTTTCAGAAACAACCTCTCTATCTCTACGAGATAGGATAAGGTCTGTGTATTCTCTACCCTCCCAGACCCCACTGTGGGAATACAGCGGATATGATGTTGTTGTTATTGTATAGTTGATTATGCTAGTAGGGTGAAAAGATGAATGGCCCTTCACATGTAACTACATATAGTGTGTACATGTATTTGTATAAAATCCAATATTCTAACATGTGGTGAGAATTATCTTTTGTGGTTTCAGTTACTTGATGTCTAGGCTTCTTATTGGATATTCACCATTTGATCTGAACAGGTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAGGTTAGGCTATGAACTATGTTGTTTTGTATCCAAGTCTTGTTTTTTTCTTATGGACACCATTTGGAATTTTTTTTGCTTTTTTATGCTTCTAGGTGGAGAGAATTTCTTCCTATTTTATTGAAAAAGACAGAATAGCTAATTAGACACCCTTAAGTTGCACTAGATTGTGTTCCCGCCCCCCAGCTTTACAGGATTTCATTTAGGCAAGTATGTGTTCAATATTAGTGTTTTTAACCCTTTTGACCACCCTGTGTGGTCCTTGATCACTATCCACATGAGATAATATGCCAGACCATCATCTATATTTACAAAAGCAATTATCCATCCCCATTTTTTCGTTCCTTATCTTCCCCATCCCTCTAAGTCATTCCCATATCTCTTCCCCATCCACCATCACCTCGCACCACTACCCACCTCTAGCAACTTCTTGAAATCAAAATACTTTTAGATCTTTGAATTTGATTCACTGTTGATAACAATGCATTGTGGGTCATAAAAAAGATTATTTGATGGATTAGAAATCAACAAGGTATGAGGAAATTTTGACTTGAATCCTTCTCTAGCTGAGAGAGATGAAGTCATGTAGATCATTTGGACCTTGTGGTTATATTGCACAGTATCTGTGCATTCATGTTATTGATTTATCAAAAAAGATTAAAGACAGATTCTTGTAGAATTTTCAAGGATCCTAAATAAGTTGGTTCAATCTTTGGTCTTAGCTTAGTACCTTTTTTCTACAAATACACAGTTCAGCTGCAGTGTGCATTATGTTGTGGTCCTTTTTCTGAACATGGAGTGATGCTTATTATCTAATTTAAAGAAGAGTATTCCAACTATGTGCTACAATAATCTATACAAAGTTGTGTGTTCTTTCCTAGTTGTGCACGTTGAATGGAATTTGGAGGATATTAAGCTTATAACTACATTAAAAAAAAAGATTTTGGAGGACATGTGTTCCTTTTGTCTACCTTGACTATTCCACTGGGCACTTGTATCCTCTTGGAAACTCTGTCCAGCGTGTTTAAGCACAATTGGAAGAAATTACCCTGTATATATGCCTCTGCTGGAACTGGAAGACAGAGACATTGCGGTTCCAGTTTCATTGACCACCTGGAACCTGGCCATAAGTCAACCTCGGTGCTTACATGTGTTAAAATACCTTATTCTGATTTCACCATAATGGATGGATGTGATTCAACCACGTCACAAAAATTGTACCTGTTTGAAAACACCGAGTAAAGAAAATGTTAAAACTTGTATTTGGTTCTTTAGTATCTCATACCCTTTTTTAGTTTTACCCGGAGTGATTTTATTTTGAGTGCTTTTATGATGTTGGGTAAGGAACTGTTGGAGCCCCCATGCAAAAAGAAAACATAAATCCCTGCTTTCAAGCATGAACGCATCTACAAAGGGAAAAAGAAATGGAAAATAGAACATAGTCTGTATTTAGTTTTGTTTATGTTATCTCTTGGAAGGTCTATTAAACCTTGTTTAAGTTATATCTGTAAACATTTCATGAGTAAATGGCTTCCATTCTTGTCGAAACATAAGTTGGTAGGGCTGCTCAAAACATAAAACTAAAAAATAAACAATATTGGACAAGATGTATGGACTATGTGATTAAACTGGATATGTTGTTGGACAATATGTATAAAAAATATGTACATTATTTGAGTATTGCATATCAGCTAGTTGAGGAGATTGGGGTTCAAAATCCTAACTGAGACAGAAAATATCTGGTGATTTCTTTCATCTTCCTAGGCATTGGACAGGGTTACTCGGTATTTATGGTGGTGGAAGGTAGTGGGTACCTGGTGGAATAGTTGAGGTGGATGCAAGCTGGTATTTACATTATATAATATAAAATGAGCACGTCTAATGAGGCAGTTTCAAATATGTGATTTCTGCATTGCATTGTCTTGTTTTTGTTCATTCTTCTTTTATGCTTACAAAAAGCAGACGAGGGAGTATGCTAAGCTTCTTTCTTTTGCGTGCATATTCACTTTCCAAGCAAATCCATGATATGAGAAACACAAATAGTTTATGCACCTCCGGGCTCTGGACATATATTTTTGTGCTACTACTATCTGAAGTTTCTTGGTAAATCTTAAGCATATCAAGGTTGGATCAAGAAGATGTAAGAATTTCTGGTCATATGCAATCAAAATAGGATGTACTGTATGATAATTTTAACCTTGTCAAAAAAGTATGTATACTACTAAATTTATTGATGTTTCACTGAATATGCAATGTAGTTTTTAGAAGATTCCAAAAAAGTATGTTTATTGCTAAATTTATTGATGTTTCACTGAATATGCATTGTAGTTTTCAGAAGATGCCATCCTAAAATCTTCAGGTTTCAGGTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGACCTCTTTTAACTGGTGACTTGCAAATTACACT</genome_strand>
        <mrna_strand>AAACTGTTAAAACTAATAAAGACAGTGTTCAGTTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAG....................................................................................................................................................................................................................GGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCNTTGGAACCGATTCTTCGGAGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGAAGAAGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCTCCCTAGAGATTTGAAGGGGCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGNTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACANCACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTANTAAAC...................................................................................................................TGGTGACTTGCAAA-TACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347015" ref_strand="+" ref_description="SGN-E347015 [cTOF-25-I12]">
      <seq>ttcagttcttgagagagaaagagaaatctcttaggttcaactaaagtttcaagaattaccaatcagggaaaaaagaaggtatttgtctaaatgcagactaggtatatggagaggacaaaatctatgaagaggagcttggagggtgatgatgaacagcctcctgagcgtaaaagacctgctttagctagtgttattgtggaagctctcaaggtggatagtcttcaaaagctctgctcatctttggaaccgattcttcggagagttgttagtgaagaggtggaacgagcattggctaagttaggccctgccagaattgctggaaggtcatctcctaagagaattgaagggcccgatggaagtaacttgcagcttcagtttaggtctaggctatctttgcctctgttcactggaggcaaagtagaaggagagcatggtgctgctatccatgttgtcttaattgacacaactactggccatcttgtgactgctggtcctgaatcatgtataaaactggacgttgttgtgctagaaggtgatntcaacaatgaagaagatgaaggatggacacaagaagaatttgacggtcatgttgttaaagagcgtgaaggaaagagacctcttttaactggtgacttgcaaattacacccaagtcctatgatgaattctaattccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="31454" stop="38665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31754" g_stop="31819" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31820" i_stop="32031" i_length="212">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32032" g_stop="32153" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="188" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32154" i_stop="32743" i_length="590">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32744" g_stop="32819" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="264" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32820" i_stop="33544" i_length="725">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33545" g_stop="33603" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="323" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33604" i_stop="35966" i_length="2363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35967" g_stop="36294" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="651" r_length="328" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36295" i_stop="38342" i_length="2048">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38343" g_stop="38365" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="674" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E347015" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31754" e_stop="31819"/>
          <exon e_start="32032" e_stop="32153"/>
          <exon e_start="32744" e_stop="32819"/>
          <exon e_start="33545" e_stop="33603"/>
          <exon e_start="35967" e_stop="36294"/>
          <exon e_start="38343" e_stop="38365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAGGTGAATTTTACTGAAAACCCCACTTGTAAAGTTGTGATCTTTATGGATATTATGTGGATATTTTTTTTGTGTGTAAATAAATTAGGGTTTTGATGTGGGGATCTTGAATTTTGTGTATTTGGGTGTTGTGGGAAATTTTCTTGAATGAACTTAAAGATCTGTTGGATTGTTTTGTTGATTGTTGTTTGTTTTGTTATTTGTGGTGAATTTAGGGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAGGTAAAGCTTTGTAACTTAATTTTTCTTGAATTTGAGTGATTTTTTTTGTTAATTTTGGTACATGAAGTTGGTCACTTGTGGGATTTCACTTAGGTATGTTGTTGTTGTTACATGAAGGGTTATTTGCTAGTTATTTAACTTGAATCTGTGCTAAGTCTATCACTTTGGATGTTTTATGCAGAAACTGAAATTTATCATTGTAATTGTTGAAAGGTTAATCCTGTTGAAGTAAAAGTTAGAATGTTTAATCCTGTTGAAGTAAAAATTTATCACAGTTTGACCAATGTGTATGGGTTAGTATATAGGAAACAATATACTAACAAGCAACATGTATTTTAACGATTCTCTTTCTGCTGTGTTTTCTTGTTATTTTGGGTTTCTTCTTCTTTTAATGGGGAAGGCTTTTAATGGGCGATGCTCTGTCAGTTAAAGCGATGGGCTCTGGAGACAACTAAGTACATACTTTTGTGGCGTTACTTACTTGTGGTTTTTCCTCACATTGCTAAAATAGTCAACTACAGAAGTTTACCTGTATGTTTTTTTTCTCTTCTTAAAAGAAATTTGAGATTATCAAATGATATTTTATGCAGTGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTTGTAAGATATATAACATTAGGATTTATTTATTTTCCTGTCATTCCTTTCATAATCTTCAATTGGTTGATAGTGTCATCCTGCTAGGAAATATGTTTCCACATTAAGTTTATCATCTATGTAAAAGAAAGTCTGTTTTGGAGGTCAGGTCTCCATGCTTTTTTGTTGCATCATAATTTTTTGCTCTTTTTGTTTTTATGTGGAATTTGAACTTGGGAATTCATCTTGACCAGTTGCCGATATTTTCTCTGATAAGGGTTATTTAGTGGGAAATCTATTTGTTCTTTCTTTTATGTTTAATATTGTACCTGTTGTATTATTCTATTATATGTTATATCACACTTTCCCTATTATTTGCTATTACTTGGTTGCTATGTCTTGTTTAATGTTGTCTTATCCTTTTCAAATTGCTTTGTTATGCGTTACTGAGCTGAGGGTCTTTCAGAAACAACCTCTCTATCTCTACGAGATAGGATAAGGTCTGTGTATTCTCTACCCTCCCAGACCCCACTGTGGGAATACAGCGGATATGATGTTGTTGTTATTGTATAGTTGATTATGCTAGTAGGGTGAAAAGATGAATGGCCCTTCACATGTAACTACATATAGTGTGTACATGTATTTGTATAAAATCCAATATTCTAACATGTGGTGAGAATTATCTTTTGTGGTTTCAGTTACTTGATGTCTAGGCTTCTTATTGGATATTCACCATTTGATCTGAACAGGTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAGGTTAGGCTATGAACTATGTTGTTTTGTATCCAAGTCTTGTTTTTTTCTTATGGACACCATTTGGAATTTTTTTTGCTTTTTTATGCTTCTAGGTGGAGAGAATTTCTTCCTATTTTATTGAAAAAGACAGAATAGCTAATTAGACACCCTTAAGTTGCACTAGATTGTGTTCCCGCCCCCCAGCTTTACAGGATTTCATTTAGGCAAGTATGTGTTCAATATTAGTGTTTTTAACCCTTTTGACCACCCTGTGTGGTCCTTGATCACTATCCACATGAGATAATATGCCAGACCATCATCTATATTTACAAAAGCAATTATCCATCCCCATTTTTTCGTTCCTTATCTTCCCCATCCCTCTAAGTCATTCCCATATCTCTTCCCCATCCACCATCACCTCGCACCACTACCCACCTCTAGCAACTTCTTGAAATCAAAATACTTTTAGATCTTTGAATTTGATTCACTGTTGATAACAATGCATTGTGGGTCATAAAAAAGATTATTTGATGGATTAGAAATCAACAAGGTATGAGGAAATTTTGACTTGAATCCTTCTCTAGCTGAGAGAGATGAAGTCATGTAGATCATTTGGACCTTGTGGTTATATTGCACAGTATCTGTGCATTCATGTTATTGATTTATCAAAAAAGATTAAAGACAGATTCTTGTAGAATTTTCAAGGATCCTAAATAAGTTGGTTCAATCTTTGGTCTTAGCTTAGTACCTTTTTTCTACAAATACACAGTTCAGCTGCAGTGTGCATTATGTTGTGGTCCTTTTTCTGAACATGGAGTGATGCTTATTATCTAATTTAAAGAAGAGTATTCCAACTATGTGCTACAATAATCTATACAAAGTTGTGTGTTCTTTCCTAGTTGTGCACGTTGAATGGAATTTGGAGGATATTAAGCTTATAACTACATTAAAAAAAAAGATTTTGGAGGACATGTGTTCCTTTTGTCTACCTTGACTATTCCACTGGGCACTTGTATCCTCTTGGAAACTCTGTCCAGCGTGTTTAAGCACAATTGGAAGAAATTACCCTGTATATATGCCTCTGCTGGAACTGGAAGACAGAGACATTGCGGTTCCAGTTTCATTGACCACCTGGAACCTGGCCATAAGTCAACCTCGGTGCTTACATGTGTTAAAATACCTTATTCTGATTTCACCATAATGGATGGATGTGATTCAACCACGTCACAAAAATTGTACCTGTTTGAAAACACCGAGTAAAGAAAATGTTAAAACTTGTATTTGGTTCTTTAGTATCTCATACCCTTTTTTAGTTTTACCCGGAGTGATTTTATTTTGAGTGCTTTTATGATGTTGGGTAAGGAACTGTTGGAGCCCCCATGCAAAAAGAAAACATAAATCCCTGCTTTCAAGCATGAACGCATCTACAAAGGGAAAAAGAAATGGAAAATAGAACATAGTCTGTATTTAGTTTTGTTTATGTTATCTCTTGGAAGGTCTATTAAACCTTGTTTAAGTTATATCTGTAAACATTTCATGAGTAAATGGCTTCCATTCTTGTCGAAACATAAGTTGGTAGGGCTGCTCAAAACATAAAACTAAAAAATAAACAATATTGGACAAGATGTATGGACTATGTGATTAAACTGGATATGTTGTTGGACAATATGTATAAAAAATATGTACATTATTTGAGTATTGCATATCAGCTAGTTGAGGAGATTGGGGTTCAAAATCCTAACTGAGACAGAAAATATCTGGTGATTTCTTTCATCTTCCTAGGCATTGGACAGGGTTACTCGGTATTTATGGTGGTGGAAGGTAGTGGGTACCTGGTGGAATAGTTGAGGTGGATGCAAGCTGGTATTTACATTATATAATATAAAATGAGCACGTCTAATGAGGCAGTTTCAAATATGTGATTTCTGCATTGCATTGTCTTGTTTTTGTTCATTCTTCTTTTATGCTTACAAAAAGCAGACGAGGGAGTATGCTAAGCTTCTTTCTTTTGCGTGCATATTCACTTTCCAAGCAAATCCATGATATGAGAAACACAAATAGTTTATGCACCTCCGGGCTCTGGACATATATTTTTGTGCTACTACTATCTGAAGTTTCTTGGTAAATCTTAAGCATATCAAGGTTGGATCAAGAAGATGTAAGAATTTCTGGTCATATGCAATCAAAATAGGATGTACTGTATGATAATTTTAACCTTGTCAAAAAAGTATGTATACTACTAAATTTATTGATGTTTCACTGAATATGCAATGTAGTTTTTAGAAGATTCCAAAAAAGTATGTTTATTGCTAAATTTATTGATGTTTCACTGAATATGCATTGTAGTTTTCAGAAGATGCCATCCTAAAATCTTCAGGTTTCAGGTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGACCTCTTTTAACTGGTGACTTGCAAATTACACTCAAGGAAGGCGTTGGAACTTTGGGGGATCTCACATTTACAGACAATTCAAGTTGGATAAGGAGCAGGAAGTTCAGACTTGGCATGAAAGTTGCTTCTGGATATTGTGAAGGAGTACGCATACGAGAAGCCAAGACTGAGGCTTTCACTGTTAAAGATCACCGTGGAGAATGTAGGCTGCTTAGTCTAAACTTTTTGTTGTTACTCTTCTCTATTCTACTGTTATTGACTCTGTCTGAACTTCTTACTCCTGCAGTGTACAAGAAACATTATCCACCAGCTCTAAATGATGATGTCTGGAGATTGGAGAAGATTGGCAAGGATGGTTCTTTCCACAAGAGGCTAAACAAGGCCGGGATATTTACTGTTGAAGACTTCCTTAGGCTTGTGGTCCGAGACCCACAGAAACTAAGAAGTGTGAGTGTATAGTGAGATATAACAAGGAAAATGAAAAAAATAGATATATTTTAACTTAACATTTCATTGCACTTTGTCTTCAATCTGACTTGTATTTCGGCAGATCCTTGGAAGTGGTATGTCAAATAAGATGTGGGAGGCTCTAATAGAGCATGCAAAGACCTGTGTCTTGAGTGGGAAGCTTTATGTCTATTATTCTGATGATTCGAGGAACGTTGGTGTTGTTTTCAACAATATTTATGAGCTGAATGGCCTTATAGCTGGTGAACAATACTATTCGGCAGATTCACTTTCAGACAGCCAGAAGGTTGTTTATTTTCTTTTATATACTGTTCCTTTGATTTTGAGTTCTCTTTGGGGTTGATATTATTGGATTTCTAACATACTGTGTTAACTCTCTAAGCTATCAGCCTGGTCATTCAACTGACTTTTTCAAAATCTAGAATTGCAATCGAATTTGAAGTGTATTTCATTTAATTGTGGTTCTTACCTTTTGATAAAGAATGTGCCAGCTCTTATATGGACTTTAAATGTTCTTGTAGGTATACGTAGATTCTTTGGTCAAGAAGGCATATGATAATTGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAGGTAACCTGTTAATTTCAAAATTTTTATACTTCTATTGGTGGTAATCAGGGAGTGGTTATCTTCTTTCTTTCGAATAGTTCTGTTTGTTTCATTGCTTTGCCTGGTCTATGAGTCATTGCTGGTATCCTTAGCTGTAATTTGGCTGCTACACATACCATCAATGACTCTTGTACTTTGGCCACTCCCCTCATTTTCATTTGTTTTTGCTTTACAAGCTACATTCGCCGATAGCATTTGTGGAAACGATGTTTCTTAATCGAGAATGTGCAGTGATTTGGAAGGTTGCAGAGTTGTGACAATGGATTGTAGACTAAAAGGAACTTGTCTAATGGATTGTTAAAATGTAATGAGGAAATATTGTTGTGATGTACCGAGACCTTACCCCGTGCCTTTTTGAGGTTGACAGACTGTTTTTAAGAGATCCTTGACTCAAAAGGAAAGTATACTCCACAAGAATAAAAGAAAAGAGACATCAAAGTAGCAAGATACAAACAAATGCTACGACCGCCAGTAATATGAATACTACAAAGAGGACAAGAGGAGACCAGCTCACTCCCTCTCACACAGAAAATGACGACACTCATCTACTTACTAATCTTCTACCCTAATCCTCAACCTCCACACTTTCCTATCTAAAGTCATGTCCTCAGTCAAATGAATTGTGTCATGTCCTATTTGATCGTGTCTGTAGTTTGGTTTCTTAGACTCTTGGAGACCTTTTGTGGTTAAGCTCTCTCTTTCTCCCTTTCCAAACTTATCCTCTGCACTATAAATATCATAATACTGTCATCTTTTAATATTGGTGCAACAGGTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCC</genome_strand>
        <mrna_strand>TTCAGTTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAG....................................................................................................................................................................................................................GGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATNTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGACCTCTTTTAACTGGTGACTTGCAAATTACACCCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTATGATGAATTCTAATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329644" ref_strand="+" ref_description="SGN-E329644 [cTOD-3-M16]">
      <seq>ttcagttcttgagagagaaagagaaatctcttaggttcaactaaagtttcaagaattaccaatcagggaaaaaagaaggtatttgtctaaatgcagactaggtatatggagaggacaaaatctatgaagaggagcttggagggtgatgatgaacagcctcctgagcgtaaaagacctgctttagctagtgttattgtggaagctctcaaggtggatagtcttcaaaagctctgctcatctttggaaccgattcttcggagagttgttagtgaagaggtggaacgagcattggctaagttaggccctgccagaattgctggaaggtcatctcctaagagaattgaagggcccgatggaagtaacttgcagcttcagtttaggtctaggctatctttgcctctgttcactggaggcaaagtagaaggagagcatggtgctgctatccatgttgtcttaattgacacaactactggccatcttgtgactgctggtcctgaatcatgtataaaactggacgttgttgtgctagaaggtgatttcaacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="31454" stop="36490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31754" g_stop="31819" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31820" i_stop="32031" i_length="212">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32032" g_stop="32153" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="188" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32154" i_stop="32743" i_length="590">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32744" g_stop="32819" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="264" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32820" i_stop="33544" i_length="725">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33545" g_stop="33603" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="323" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33604" i_stop="35966" i_length="2363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35967" g_stop="36190" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="547" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E329644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31754" e_stop="31819"/>
          <exon e_start="32032" e_stop="32153"/>
          <exon e_start="32744" e_stop="32819"/>
          <exon e_start="33545" e_stop="33603"/>
          <exon e_start="35967" e_stop="36190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAGGTGAATTTTACTGAAAACCCCACTTGTAAAGTTGTGATCTTTATGGATATTATGTGGATATTTTTTTTGTGTGTAAATAAATTAGGGTTTTGATGTGGGGATCTTGAATTTTGTGTATTTGGGTGTTGTGGGAAATTTTCTTGAATGAACTTAAAGATCTGTTGGATTGTTTTGTTGATTGTTGTTTGTTTTGTTATTTGTGGTGAATTTAGGGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAGGTAAAGCTTTGTAACTTAATTTTTCTTGAATTTGAGTGATTTTTTTTGTTAATTTTGGTACATGAAGTTGGTCACTTGTGGGATTTCACTTAGGTATGTTGTTGTTGTTACATGAAGGGTTATTTGCTAGTTATTTAACTTGAATCTGTGCTAAGTCTATCACTTTGGATGTTTTATGCAGAAACTGAAATTTATCATTGTAATTGTTGAAAGGTTAATCCTGTTGAAGTAAAAGTTAGAATGTTTAATCCTGTTGAAGTAAAAATTTATCACAGTTTGACCAATGTGTATGGGTTAGTATATAGGAAACAATATACTAACAAGCAACATGTATTTTAACGATTCTCTTTCTGCTGTGTTTTCTTGTTATTTTGGGTTTCTTCTTCTTTTAATGGGGAAGGCTTTTAATGGGCGATGCTCTGTCAGTTAAAGCGATGGGCTCTGGAGACAACTAAGTACATACTTTTGTGGCGTTACTTACTTGTGGTTTTTCCTCACATTGCTAAAATAGTCAACTACAGAAGTTTACCTGTATGTTTTTTTTCTCTTCTTAAAAGAAATTTGAGATTATCAAATGATATTTTATGCAGTGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTTGTAAGATATATAACATTAGGATTTATTTATTTTCCTGTCATTCCTTTCATAATCTTCAATTGGTTGATAGTGTCATCCTGCTAGGAAATATGTTTCCACATTAAGTTTATCATCTATGTAAAAGAAAGTCTGTTTTGGAGGTCAGGTCTCCATGCTTTTTTGTTGCATCATAATTTTTTGCTCTTTTTGTTTTTATGTGGAATTTGAACTTGGGAATTCATCTTGACCAGTTGCCGATATTTTCTCTGATAAGGGTTATTTAGTGGGAAATCTATTTGTTCTTTCTTTTATGTTTAATATTGTACCTGTTGTATTATTCTATTATATGTTATATCACACTTTCCCTATTATTTGCTATTACTTGGTTGCTATGTCTTGTTTAATGTTGTCTTATCCTTTTCAAATTGCTTTGTTATGCGTTACTGAGCTGAGGGTCTTTCAGAAACAACCTCTCTATCTCTACGAGATAGGATAAGGTCTGTGTATTCTCTACCCTCCCAGACCCCACTGTGGGAATACAGCGGATATGATGTTGTTGTTATTGTATAGTTGATTATGCTAGTAGGGTGAAAAGATGAATGGCCCTTCACATGTAACTACATATAGTGTGTACATGTATTTGTATAAAATCCAATATTCTAACATGTGGTGAGAATTATCTTTTGTGGTTTCAGTTACTTGATGTCTAGGCTTCTTATTGGATATTCACCATTTGATCTGAACAGGTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAGGTTAGGCTATGAACTATGTTGTTTTGTATCCAAGTCTTGTTTTTTTCTTATGGACACCATTTGGAATTTTTTTTGCTTTTTTATGCTTCTAGGTGGAGAGAATTTCTTCCTATTTTATTGAAAAAGACAGAATAGCTAATTAGACACCCTTAAGTTGCACTAGATTGTGTTCCCGCCCCCCAGCTTTACAGGATTTCATTTAGGCAAGTATGTGTTCAATATTAGTGTTTTTAACCCTTTTGACCACCCTGTGTGGTCCTTGATCACTATCCACATGAGATAATATGCCAGACCATCATCTATATTTACAAAAGCAATTATCCATCCCCATTTTTTCGTTCCTTATCTTCCCCATCCCTCTAAGTCATTCCCATATCTCTTCCCCATCCACCATCACCTCGCACCACTACCCACCTCTAGCAACTTCTTGAAATCAAAATACTTTTAGATCTTTGAATTTGATTCACTGTTGATAACAATGCATTGTGGGTCATAAAAAAGATTATTTGATGGATTAGAAATCAACAAGGTATGAGGAAATTTTGACTTGAATCCTTCTCTAGCTGAGAGAGATGAAGTCATGTAGATCATTTGGACCTTGTGGTTATATTGCACAGTATCTGTGCATTCATGTTATTGATTTATCAAAAAAGATTAAAGACAGATTCTTGTAGAATTTTCAAGGATCCTAAATAAGTTGGTTCAATCTTTGGTCTTAGCTTAGTACCTTTTTTCTACAAATACACAGTTCAGCTGCAGTGTGCATTATGTTGTGGTCCTTTTTCTGAACATGGAGTGATGCTTATTATCTAATTTAAAGAAGAGTATTCCAACTATGTGCTACAATAATCTATACAAAGTTGTGTGTTCTTTCCTAGTTGTGCACGTTGAATGGAATTTGGAGGATATTAAGCTTATAACTACATTAAAAAAAAAGATTTTGGAGGACATGTGTTCCTTTTGTCTACCTTGACTATTCCACTGGGCACTTGTATCCTCTTGGAAACTCTGTCCAGCGTGTTTAAGCACAATTGGAAGAAATTACCCTGTATATATGCCTCTGCTGGAACTGGAAGACAGAGACATTGCGGTTCCAGTTTCATTGACCACCTGGAACCTGGCCATAAGTCAACCTCGGTGCTTACATGTGTTAAAATACCTTATTCTGATTTCACCATAATGGATGGATGTGATTCAACCACGTCACAAAAATTGTACCTGTTTGAAAACACCGAGTAAAGAAAATGTTAAAACTTGTATTTGGTTCTTTAGTATCTCATACCCTTTTTTAGTTTTACCCGGAGTGATTTTATTTTGAGTGCTTTTATGATGTTGGGTAAGGAACTGTTGGAGCCCCCATGCAAAAAGAAAACATAAATCCCTGCTTTCAAGCATGAACGCATCTACAAAGGGAAAAAGAAATGGAAAATAGAACATAGTCTGTATTTAGTTTTGTTTATGTTATCTCTTGGAAGGTCTATTAAACCTTGTTTAAGTTATATCTGTAAACATTTCATGAGTAAATGGCTTCCATTCTTGTCGAAACATAAGTTGGTAGGGCTGCTCAAAACATAAAACTAAAAAATAAACAATATTGGACAAGATGTATGGACTATGTGATTAAACTGGATATGTTGTTGGACAATATGTATAAAAAATATGTACATTATTTGAGTATTGCATATCAGCTAGTTGAGGAGATTGGGGTTCAAAATCCTAACTGAGACAGAAAATATCTGGTGATTTCTTTCATCTTCCTAGGCATTGGACAGGGTTACTCGGTATTTATGGTGGTGGAAGGTAGTGGGTACCTGGTGGAATAGTTGAGGTGGATGCAAGCTGGTATTTACATTATATAATATAAAATGAGCACGTCTAATGAGGCAGTTTCAAATATGTGATTTCTGCATTGCATTGTCTTGTTTTTGTTCATTCTTCTTTTATGCTTACAAAAAGCAGACGAGGGAGTATGCTAAGCTTCTTTCTTTTGCGTGCATATTCACTTTCCAAGCAAATCCATGATATGAGAAACACAAATAGTTTATGCACCTCCGGGCTCTGGACATATATTTTTGTGCTACTACTATCTGAAGTTTCTTGGTAAATCTTAAGCATATCAAGGTTGGATCAAGAAGATGTAAGAATTTCTGGTCATATGCAATCAAAATAGGATGTACTGTATGATAATTTTAACCTTGTCAAAAAAGTATGTATACTACTAAATTTATTGATGTTTCACTGAATATGCAATGTAGTTTTTAGAAGATTCCAAAAAAGTATGTTTATTGCTAAATTTATTGATGTTTCACTGAATATGCATTGTAGTTTTCAGAAGATGCCATCCTAAAATCTTCAGGTTTCAGGTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATG</genome_strand>
        <mrna_strand>TTCAGTTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAG....................................................................................................................................................................................................................GGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323549" ref_strand="+" ref_description="SGN-E323549 [cTOC-2-I3]">
      <seq>gttcttgagagagaaagagaaatctcttagggggaactaaagtttcaagaattaccaatcagggaaaaaagaaggtatttgtctaaatgcagactaggtatatggagaggacaaaatctatgaagaggagcttggagggtgatgatgaacagcctcctgagcgtaaaagacctgctttagctagtgttattgtggaagctctcaaggtggatagtcttcaaaagctctgctcatctttggaaccgattcttcggagagttgttagtgaagaggtggaacgagcattggctaagttaggccctgccagaattgctggaaggtcatctcctaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="31458" stop="33907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31758" g_stop="31819" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31820" i_stop="32031" i_length="212">
            <donor d_prob="0.943" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32032" g_stop="32153" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="184" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32154" i_stop="32743" i_length="590">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32744" g_stop="32819" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="260" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32820" i_stop="33544" i_length="725">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33545" g_stop="33603" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="319" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E323549" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31758" e_stop="31819"/>
          <exon e_start="32032" e_stop="32153"/>
          <exon e_start="32744" e_stop="32819"/>
          <exon e_start="33545" e_stop="33603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAGGTGAATTTTACTGAAAACCCCACTTGTAAAGTTGTGATCTTTATGGATATTATGTGGATATTTTTTTTGTGTGTAAATAAATTAGGGTTTTGATGTGGGGATCTTGAATTTTGTGTATTTGGGTGTTGTGGGAAATTTTCTTGAATGAACTTAAAGATCTGTTGGATTGTTTTGTTGATTGTTGTTTGTTTTGTTATTTGTGGTGAATTTAGGGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAGGTAAAGCTTTGTAACTTAATTTTTCTTGAATTTGAGTGATTTTTTTTGTTAATTTTGGTACATGAAGTTGGTCACTTGTGGGATTTCACTTAGGTATGTTGTTGTTGTTACATGAAGGGTTATTTGCTAGTTATTTAACTTGAATCTGTGCTAAGTCTATCACTTTGGATGTTTTATGCAGAAACTGAAATTTATCATTGTAATTGTTGAAAGGTTAATCCTGTTGAAGTAAAAGTTAGAATGTTTAATCCTGTTGAAGTAAAAATTTATCACAGTTTGACCAATGTGTATGGGTTAGTATATAGGAAACAATATACTAACAAGCAACATGTATTTTAACGATTCTCTTTCTGCTGTGTTTTCTTGTTATTTTGGGTTTCTTCTTCTTTTAATGGGGAAGGCTTTTAATGGGCGATGCTCTGTCAGTTAAAGCGATGGGCTCTGGAGACAACTAAGTACATACTTTTGTGGCGTTACTTACTTGTGGTTTTTCCTCACATTGCTAAAATAGTCAACTACAGAAGTTTACCTGTATGTTTTTTTTCTCTTCTTAAAAGAAATTTGAGATTATCAAATGATATTTTATGCAGTGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTTGTAAGATATATAACATTAGGATTTATTTATTTTCCTGTCATTCCTTTCATAATCTTCAATTGGTTGATAGTGTCATCCTGCTAGGAAATATGTTTCCACATTAAGTTTATCATCTATGTAAAAGAAAGTCTGTTTTGGAGGTCAGGTCTCCATGCTTTTTTGTTGCATCATAATTTTTTGCTCTTTTTGTTTTTATGTGGAATTTGAACTTGGGAATTCATCTTGACCAGTTGCCGATATTTTCTCTGATAAGGGTTATTTAGTGGGAAATCTATTTGTTCTTTCTTTTATGTTTAATATTGTACCTGTTGTATTATTCTATTATATGTTATATCACACTTTCCCTATTATTTGCTATTACTTGGTTGCTATGTCTTGTTTAATGTTGTCTTATCCTTTTCAAATTGCTTTGTTATGCGTTACTGAGCTGAGGGTCTTTCAGAAACAACCTCTCTATCTCTACGAGATAGGATAAGGTCTGTGTATTCTCTACCCTCCCAGACCCCACTGTGGGAATACAGCGGATATGATGTTGTTGTTATTGTATAGTTGATTATGCTAGTAGGGTGAAAAGATGAATGGCCCTTCACATGTAACTACATATAGTGTGTACATGTATTTGTATAAAATCCAATATTCTAACATGTGGTGAGAATTATCTTTTGTGGTTTCAGTTACTTGATGTCTAGGCTTCTTATTGGATATTCACCATTTGATCTGAACAGGTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAG</genome_strand>
        <mrna_strand>GTTCTTGAGAGAGAAAGAGAAATCTCTTAGGGGGAACTAAAGTTTCAAGAATTACCAATCAG....................................................................................................................................................................................................................GGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328679" ref_strand="+" ref_description="SGN-E328679 [cTOC-23-M1]">
      <seq>ttcttgagagagaaagagaaatctcttaggttcaactaaagtttcaagaattaccaatcagggaaaaaagaaggtatttgtctaaatgcagactaggtatatggagaggacaaaatctatgaagaggagcttggagggtgatgatgaacagcctcctgagcgtaaaagacctgctttagctagtgttattgtggaagctctcaaggtggatagtcttcaaaagctctgctcatctttggaaccgattcttcggagagttgttagtgaagaggtggaacgagcattggctaagttaggccctgccagaattgctggaaggtcatctcctaagagaattgaagggcccgatggaagtaacttgcagcttcagtttaggtctaggctatctttgcctctgttcactggaggcaaagtagaaggagagcatggtgctgctatccatgttgtcttaattgacacaactactggccatcttgtgactgctggtcctgaatcatgtataaaactggacgttgttgtgctagaaggtgatttcaacaatgaagaagatgaaggatggacacnagaagaatttgacggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="31459" stop="36528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31759" g_stop="31819" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31820" i_stop="32031" i_length="212">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32032" g_stop="32153" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="183" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32154" i_stop="32743" i_length="590">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32744" g_stop="32819" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="259" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32820" i_stop="33544" i_length="725">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33545" g_stop="33603" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="318" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33604" i_stop="35966" i_length="2363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35967" g_stop="36228" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="580" r_length="262" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E328679" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31759" e_stop="31819"/>
          <exon e_start="32032" e_stop="32153"/>
          <exon e_start="32744" e_stop="32819"/>
          <exon e_start="33545" e_stop="33603"/>
          <exon e_start="35967" e_stop="36228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAGGTGAATTTTACTGAAAACCCCACTTGTAAAGTTGTGATCTTTATGGATATTATGTGGATATTTTTTTTGTGTGTAAATAAATTAGGGTTTTGATGTGGGGATCTTGAATTTTGTGTATTTGGGTGTTGTGGGAAATTTTCTTGAATGAACTTAAAGATCTGTTGGATTGTTTTGTTGATTGTTGTTTGTTTTGTTATTTGTGGTGAATTTAGGGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAGGTAAAGCTTTGTAACTTAATTTTTCTTGAATTTGAGTGATTTTTTTTGTTAATTTTGGTACATGAAGTTGGTCACTTGTGGGATTTCACTTAGGTATGTTGTTGTTGTTACATGAAGGGTTATTTGCTAGTTATTTAACTTGAATCTGTGCTAAGTCTATCACTTTGGATGTTTTATGCAGAAACTGAAATTTATCATTGTAATTGTTGAAAGGTTAATCCTGTTGAAGTAAAAGTTAGAATGTTTAATCCTGTTGAAGTAAAAATTTATCACAGTTTGACCAATGTGTATGGGTTAGTATATAGGAAACAATATACTAACAAGCAACATGTATTTTAACGATTCTCTTTCTGCTGTGTTTTCTTGTTATTTTGGGTTTCTTCTTCTTTTAATGGGGAAGGCTTTTAATGGGCGATGCTCTGTCAGTTAAAGCGATGGGCTCTGGAGACAACTAAGTACATACTTTTGTGGCGTTACTTACTTGTGGTTTTTCCTCACATTGCTAAAATAGTCAACTACAGAAGTTTACCTGTATGTTTTTTTTCTCTTCTTAAAAGAAATTTGAGATTATCAAATGATATTTTATGCAGTGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTTGTAAGATATATAACATTAGGATTTATTTATTTTCCTGTCATTCCTTTCATAATCTTCAATTGGTTGATAGTGTCATCCTGCTAGGAAATATGTTTCCACATTAAGTTTATCATCTATGTAAAAGAAAGTCTGTTTTGGAGGTCAGGTCTCCATGCTTTTTTGTTGCATCATAATTTTTTGCTCTTTTTGTTTTTATGTGGAATTTGAACTTGGGAATTCATCTTGACCAGTTGCCGATATTTTCTCTGATAAGGGTTATTTAGTGGGAAATCTATTTGTTCTTTCTTTTATGTTTAATATTGTACCTGTTGTATTATTCTATTATATGTTATATCACACTTTCCCTATTATTTGCTATTACTTGGTTGCTATGTCTTGTTTAATGTTGTCTTATCCTTTTCAAATTGCTTTGTTATGCGTTACTGAGCTGAGGGTCTTTCAGAAACAACCTCTCTATCTCTACGAGATAGGATAAGGTCTGTGTATTCTCTACCCTCCCAGACCCCACTGTGGGAATACAGCGGATATGATGTTGTTGTTATTGTATAGTTGATTATGCTAGTAGGGTGAAAAGATGAATGGCCCTTCACATGTAACTACATATAGTGTGTACATGTATTTGTATAAAATCCAATATTCTAACATGTGGTGAGAATTATCTTTTGTGGTTTCAGTTACTTGATGTCTAGGCTTCTTATTGGATATTCACCATTTGATCTGAACAGGTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAGGTTAGGCTATGAACTATGTTGTTTTGTATCCAAGTCTTGTTTTTTTCTTATGGACACCATTTGGAATTTTTTTTGCTTTTTTATGCTTCTAGGTGGAGAGAATTTCTTCCTATTTTATTGAAAAAGACAGAATAGCTAATTAGACACCCTTAAGTTGCACTAGATTGTGTTCCCGCCCCCCAGCTTTACAGGATTTCATTTAGGCAAGTATGTGTTCAATATTAGTGTTTTTAACCCTTTTGACCACCCTGTGTGGTCCTTGATCACTATCCACATGAGATAATATGCCAGACCATCATCTATATTTACAAAAGCAATTATCCATCCCCATTTTTTCGTTCCTTATCTTCCCCATCCCTCTAAGTCATTCCCATATCTCTTCCCCATCCACCATCACCTCGCACCACTACCCACCTCTAGCAACTTCTTGAAATCAAAATACTTTTAGATCTTTGAATTTGATTCACTGTTGATAACAATGCATTGTGGGTCATAAAAAAGATTATTTGATGGATTAGAAATCAACAAGGTATGAGGAAATTTTGACTTGAATCCTTCTCTAGCTGAGAGAGATGAAGTCATGTAGATCATTTGGACCTTGTGGTTATATTGCACAGTATCTGTGCATTCATGTTATTGATTTATCAAAAAAGATTAAAGACAGATTCTTGTAGAATTTTCAAGGATCCTAAATAAGTTGGTTCAATCTTTGGTCTTAGCTTAGTACCTTTTTTCTACAAATACACAGTTCAGCTGCAGTGTGCATTATGTTGTGGTCCTTTTTCTGAACATGGAGTGATGCTTATTATCTAATTTAAAGAAGAGTATTCCAACTATGTGCTACAATAATCTATACAAAGTTGTGTGTTCTTTCCTAGTTGTGCACGTTGAATGGAATTTGGAGGATATTAAGCTTATAACTACATTAAAAAAAAAGATTTTGGAGGACATGTGTTCCTTTTGTCTACCTTGACTATTCCACTGGGCACTTGTATCCTCTTGGAAACTCTGTCCAGCGTGTTTAAGCACAATTGGAAGAAATTACCCTGTATATATGCCTCTGCTGGAACTGGAAGACAGAGACATTGCGGTTCCAGTTTCATTGACCACCTGGAACCTGGCCATAAGTCAACCTCGGTGCTTACATGTGTTAAAATACCTTATTCTGATTTCACCATAATGGATGGATGTGATTCAACCACGTCACAAAAATTGTACCTGTTTGAAAACACCGAGTAAAGAAAATGTTAAAACTTGTATTTGGTTCTTTAGTATCTCATACCCTTTTTTAGTTTTACCCGGAGTGATTTTATTTTGAGTGCTTTTATGATGTTGGGTAAGGAACTGTTGGAGCCCCCATGCAAAAAGAAAACATAAATCCCTGCTTTCAAGCATGAACGCATCTACAAAGGGAAAAAGAAATGGAAAATAGAACATAGTCTGTATTTAGTTTTGTTTATGTTATCTCTTGGAAGGTCTATTAAACCTTGTTTAAGTTATATCTGTAAACATTTCATGAGTAAATGGCTTCCATTCTTGTCGAAACATAAGTTGGTAGGGCTGCTCAAAACATAAAACTAAAAAATAAACAATATTGGACAAGATGTATGGACTATGTGATTAAACTGGATATGTTGTTGGACAATATGTATAAAAAATATGTACATTATTTGAGTATTGCATATCAGCTAGTTGAGGAGATTGGGGTTCAAAATCCTAACTGAGACAGAAAATATCTGGTGATTTCTTTCATCTTCCTAGGCATTGGACAGGGTTACTCGGTATTTATGGTGGTGGAAGGTAGTGGGTACCTGGTGGAATAGTTGAGGTGGATGCAAGCTGGTATTTACATTATATAATATAAAATGAGCACGTCTAATGAGGCAGTTTCAAATATGTGATTTCTGCATTGCATTGTCTTGTTTTTGTTCATTCTTCTTTTATGCTTACAAAAAGCAGACGAGGGAGTATGCTAAGCTTCTTTCTTTTGCGTGCATATTCACTTTCCAAGCAAATCCATGATATGAGAAACACAAATAGTTTATGCACCTCCGGGCTCTGGACATATATTTTTGTGCTACTACTATCTGAAGTTTCTTGGTAAATCTTAAGCATATCAAGGTTGGATCAAGAAGATGTAAGAATTTCTGGTCATATGCAATCAAAATAGGATGTACTGTATGATAATTTTAACCTTGTCAAAAAAGTATGTATACTACTAAATTTATTGATGTTTCACTGAATATGCAATGTAGTTTTTAGAAGATTCCAAAAAAGTATGTTTATTGCTAAATTTATTGATGTTTCACTGAATATGCATTGTAGTTTTCAGAAGATGCCATCCTAAAATCTTCAGGTTTCAGGTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGT</genome_strand>
        <mrna_strand>TTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAG....................................................................................................................................................................................................................GGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACNAGAAGAATTTGACGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323142" ref_strand="+" ref_description="SGN-E323142 [cTOB-28-P9]">
      <seq>ttcttgagagagaaagagaaatctcttaggttcaactaaagtttcaagaattaccaatcagggaaaaaagaaggtatttgtctaaatgcagactaggtatatggagaggacaaaatctatgaagaggagcttggagggtgatgatgaacagcctcctgagcgtaaaagacctgctttagctagtgttattgtggaagctctcaaggtggatagtcttcaaaagctctgctcatctttggaaccgattcttcggagagttgttagtgaagaggtggaacgagcattggctaagttaggccctgccagaattgctggaaggtcatctcctaagagaattgaagggcccgatggaagtaacttgcagcttcagtttaggtctaggctatctttgcctctgttcactggaggcaaagtagaaggagagcatggtgctgctatccatgttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="31459" stop="36397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31759" g_stop="31819" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31820" i_stop="32031" i_length="212">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32032" g_stop="32153" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="183" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32154" i_stop="32743" i_length="590">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32744" g_stop="32819" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="259" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32820" i_stop="33544" i_length="725">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33545" g_stop="33603" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="318" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33604" i_stop="35966" i_length="2363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35967" g_stop="36097" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="449" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E323142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31759" e_stop="31819"/>
          <exon e_start="32032" e_stop="32153"/>
          <exon e_start="32744" e_stop="32819"/>
          <exon e_start="33545" e_stop="33603"/>
          <exon e_start="35967" e_stop="36097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAGGTGAATTTTACTGAAAACCCCACTTGTAAAGTTGTGATCTTTATGGATATTATGTGGATATTTTTTTTGTGTGTAAATAAATTAGGGTTTTGATGTGGGGATCTTGAATTTTGTGTATTTGGGTGTTGTGGGAAATTTTCTTGAATGAACTTAAAGATCTGTTGGATTGTTTTGTTGATTGTTGTTTGTTTTGTTATTTGTGGTGAATTTAGGGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAGGTAAAGCTTTGTAACTTAATTTTTCTTGAATTTGAGTGATTTTTTTTGTTAATTTTGGTACATGAAGTTGGTCACTTGTGGGATTTCACTTAGGTATGTTGTTGTTGTTACATGAAGGGTTATTTGCTAGTTATTTAACTTGAATCTGTGCTAAGTCTATCACTTTGGATGTTTTATGCAGAAACTGAAATTTATCATTGTAATTGTTGAAAGGTTAATCCTGTTGAAGTAAAAGTTAGAATGTTTAATCCTGTTGAAGTAAAAATTTATCACAGTTTGACCAATGTGTATGGGTTAGTATATAGGAAACAATATACTAACAAGCAACATGTATTTTAACGATTCTCTTTCTGCTGTGTTTTCTTGTTATTTTGGGTTTCTTCTTCTTTTAATGGGGAAGGCTTTTAATGGGCGATGCTCTGTCAGTTAAAGCGATGGGCTCTGGAGACAACTAAGTACATACTTTTGTGGCGTTACTTACTTGTGGTTTTTCCTCACATTGCTAAAATAGTCAACTACAGAAGTTTACCTGTATGTTTTTTTTCTCTTCTTAAAAGAAATTTGAGATTATCAAATGATATTTTATGCAGTGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTTGTAAGATATATAACATTAGGATTTATTTATTTTCCTGTCATTCCTTTCATAATCTTCAATTGGTTGATAGTGTCATCCTGCTAGGAAATATGTTTCCACATTAAGTTTATCATCTATGTAAAAGAAAGTCTGTTTTGGAGGTCAGGTCTCCATGCTTTTTTGTTGCATCATAATTTTTTGCTCTTTTTGTTTTTATGTGGAATTTGAACTTGGGAATTCATCTTGACCAGTTGCCGATATTTTCTCTGATAAGGGTTATTTAGTGGGAAATCTATTTGTTCTTTCTTTTATGTTTAATATTGTACCTGTTGTATTATTCTATTATATGTTATATCACACTTTCCCTATTATTTGCTATTACTTGGTTGCTATGTCTTGTTTAATGTTGTCTTATCCTTTTCAAATTGCTTTGTTATGCGTTACTGAGCTGAGGGTCTTTCAGAAACAACCTCTCTATCTCTACGAGATAGGATAAGGTCTGTGTATTCTCTACCCTCCCAGACCCCACTGTGGGAATACAGCGGATATGATGTTGTTGTTATTGTATAGTTGATTATGCTAGTAGGGTGAAAAGATGAATGGCCCTTCACATGTAACTACATATAGTGTGTACATGTATTTGTATAAAATCCAATATTCTAACATGTGGTGAGAATTATCTTTTGTGGTTTCAGTTACTTGATGTCTAGGCTTCTTATTGGATATTCACCATTTGATCTGAACAGGTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAGGTTAGGCTATGAACTATGTTGTTTTGTATCCAAGTCTTGTTTTTTTCTTATGGACACCATTTGGAATTTTTTTTGCTTTTTTATGCTTCTAGGTGGAGAGAATTTCTTCCTATTTTATTGAAAAAGACAGAATAGCTAATTAGACACCCTTAAGTTGCACTAGATTGTGTTCCCGCCCCCCAGCTTTACAGGATTTCATTTAGGCAAGTATGTGTTCAATATTAGTGTTTTTAACCCTTTTGACCACCCTGTGTGGTCCTTGATCACTATCCACATGAGATAATATGCCAGACCATCATCTATATTTACAAAAGCAATTATCCATCCCCATTTTTTCGTTCCTTATCTTCCCCATCCCTCTAAGTCATTCCCATATCTCTTCCCCATCCACCATCACCTCGCACCACTACCCACCTCTAGCAACTTCTTGAAATCAAAATACTTTTAGATCTTTGAATTTGATTCACTGTTGATAACAATGCATTGTGGGTCATAAAAAAGATTATTTGATGGATTAGAAATCAACAAGGTATGAGGAAATTTTGACTTGAATCCTTCTCTAGCTGAGAGAGATGAAGTCATGTAGATCATTTGGACCTTGTGGTTATATTGCACAGTATCTGTGCATTCATGTTATTGATTTATCAAAAAAGATTAAAGACAGATTCTTGTAGAATTTTCAAGGATCCTAAATAAGTTGGTTCAATCTTTGGTCTTAGCTTAGTACCTTTTTTCTACAAATACACAGTTCAGCTGCAGTGTGCATTATGTTGTGGTCCTTTTTCTGAACATGGAGTGATGCTTATTATCTAATTTAAAGAAGAGTATTCCAACTATGTGCTACAATAATCTATACAAAGTTGTGTGTTCTTTCCTAGTTGTGCACGTTGAATGGAATTTGGAGGATATTAAGCTTATAACTACATTAAAAAAAAAGATTTTGGAGGACATGTGTTCCTTTTGTCTACCTTGACTATTCCACTGGGCACTTGTATCCTCTTGGAAACTCTGTCCAGCGTGTTTAAGCACAATTGGAAGAAATTACCCTGTATATATGCCTCTGCTGGAACTGGAAGACAGAGACATTGCGGTTCCAGTTTCATTGACCACCTGGAACCTGGCCATAAGTCAACCTCGGTGCTTACATGTGTTAAAATACCTTATTCTGATTTCACCATAATGGATGGATGTGATTCAACCACGTCACAAAAATTGTACCTGTTTGAAAACACCGAGTAAAGAAAATGTTAAAACTTGTATTTGGTTCTTTAGTATCTCATACCCTTTTTTAGTTTTACCCGGAGTGATTTTATTTTGAGTGCTTTTATGATGTTGGGTAAGGAACTGTTGGAGCCCCCATGCAAAAAGAAAACATAAATCCCTGCTTTCAAGCATGAACGCATCTACAAAGGGAAAAAGAAATGGAAAATAGAACATAGTCTGTATTTAGTTTTGTTTATGTTATCTCTTGGAAGGTCTATTAAACCTTGTTTAAGTTATATCTGTAAACATTTCATGAGTAAATGGCTTCCATTCTTGTCGAAACATAAGTTGGTAGGGCTGCTCAAAACATAAAACTAAAAAATAAACAATATTGGACAAGATGTATGGACTATGTGATTAAACTGGATATGTTGTTGGACAATATGTATAAAAAATATGTACATTATTTGAGTATTGCATATCAGCTAGTTGAGGAGATTGGGGTTCAAAATCCTAACTGAGACAGAAAATATCTGGTGATTTCTTTCATCTTCCTAGGCATTGGACAGGGTTACTCGGTATTTATGGTGGTGGAAGGTAGTGGGTACCTGGTGGAATAGTTGAGGTGGATGCAAGCTGGTATTTACATTATATAATATAAAATGAGCACGTCTAATGAGGCAGTTTCAAATATGTGATTTCTGCATTGCATTGTCTTGTTTTTGTTCATTCTTCTTTTATGCTTACAAAAAGCAGACGAGGGAGTATGCTAAGCTTCTTTCTTTTGCGTGCATATTCACTTTCCAAGCAAATCCATGATATGAGAAACACAAATAGTTTATGCACCTCCGGGCTCTGGACATATATTTTTGTGCTACTACTATCTGAAGTTTCTTGGTAAATCTTAAGCATATCAAGGTTGGATCAAGAAGATGTAAGAATTTCTGGTCATATGCAATCAAAATAGGATGTACTGTATGATAATTTTAACCTTGTCAAAAAAGTATGTATACTACTAAATTTATTGATGTTTCACTGAATATGCAATGTAGTTTTTAGAAGATTCCAAAAAAGTATGTTTATTGCTAAATTTATTGATGTTTCACTGAATATGCATTGTAGTTTTCAGAAGATGCCATCCTAAAATCTTCAGGTTTCAGGTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCT</genome_strand>
        <mrna_strand>TTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAG....................................................................................................................................................................................................................GGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736346" ref_strand="+" ref_description="SGN-E736346 [LC05BF10]">
      <seq>cctattagagaaatctcttaggttcaactaaagtttcaagaattaccaatcagggaaaaaagaaggtatttgtctaaatgcagactaggtatatggagaggacaaaatctatgaagaggagcttggagggtgatgatgaacagcctcctgagcgtaaaagacctgctttagctagtgttattgtggaagctctcaaggtggatagtcttcaaaagctctgctcatctttggaaccgattcttcggagagttgttagtgaagaggtggaacgagcattggctaagttaggccctgccagaattgctggaaggtcatctcctaagagaattgaagggcccgatggaagtaacttgcagcttcagtttaggtctaggctatctttgcctctgttcactggaggcaaagtagaaggagagcatggtgctgctatccatgttgtcttaattgacacaactactggccatcttgtgactgctggtcctgaatcatgtataaaactggacgttgttgtgctagaaggtgatttcaacaatgaagaagatgaaggatggacacaagaagaatttgacggtcatgttgttaaagagcgtgaaggaaagacacctcttttaactggtgacttgcaaattacactcaaggaaggcgttggaactttgggggatctcacctttacagaccattcaagttggataaggagcaggaagttccgacttggcatgaaagttgcttctggatattgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="31473" stop="36699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31767" g_stop="31819" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31820" i_stop="32031" i_length="212">
            <donor d_prob="0.943" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32032" g_stop="32153" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="175" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32154" i_stop="32743" i_length="590">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32744" g_stop="32819" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="251" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32820" i_stop="33544" i_length="725">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33545" g_stop="33603" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="310" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33604" i_stop="35966" i_length="2363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35967" g_stop="36399" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="743" r_length="433" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E736346" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31767" e_stop="31819"/>
          <exon e_start="32032" e_stop="32153"/>
          <exon e_start="32744" e_stop="32819"/>
          <exon e_start="33545" e_stop="33603"/>
          <exon e_start="35967" e_stop="36399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAGGTGAATTTTACTGAAAACCCCACTTGTAAAGTTGTGATCTTTATGGATATTATGTGGATATTTTTTTTGTGTGTAAATAAATTAGGGTTTTGATGTGGGGATCTTGAATTTTGTGTATTTGGGTGTTGTGGGAAATTTTCTTGAATGAACTTAAAGATCTGTTGGATTGTTTTGTTGATTGTTGTTTGTTTTGTTATTTGTGGTGAATTTAGGGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAGGTAAAGCTTTGTAACTTAATTTTTCTTGAATTTGAGTGATTTTTTTTGTTAATTTTGGTACATGAAGTTGGTCACTTGTGGGATTTCACTTAGGTATGTTGTTGTTGTTACATGAAGGGTTATTTGCTAGTTATTTAACTTGAATCTGTGCTAAGTCTATCACTTTGGATGTTTTATGCAGAAACTGAAATTTATCATTGTAATTGTTGAAAGGTTAATCCTGTTGAAGTAAAAGTTAGAATGTTTAATCCTGTTGAAGTAAAAATTTATCACAGTTTGACCAATGTGTATGGGTTAGTATATAGGAAACAATATACTAACAAGCAACATGTATTTTAACGATTCTCTTTCTGCTGTGTTTTCTTGTTATTTTGGGTTTCTTCTTCTTTTAATGGGGAAGGCTTTTAATGGGCGATGCTCTGTCAGTTAAAGCGATGGGCTCTGGAGACAACTAAGTACATACTTTTGTGGCGTTACTTACTTGTGGTTTTTCCTCACATTGCTAAAATAGTCAACTACAGAAGTTTACCTGTATGTTTTTTTTCTCTTCTTAAAAGAAATTTGAGATTATCAAATGATATTTTATGCAGTGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTTGTAAGATATATAACATTAGGATTTATTTATTTTCCTGTCATTCCTTTCATAATCTTCAATTGGTTGATAGTGTCATCCTGCTAGGAAATATGTTTCCACATTAAGTTTATCATCTATGTAAAAGAAAGTCTGTTTTGGAGGTCAGGTCTCCATGCTTTTTTGTTGCATCATAATTTTTTGCTCTTTTTGTTTTTATGTGGAATTTGAACTTGGGAATTCATCTTGACCAGTTGCCGATATTTTCTCTGATAAGGGTTATTTAGTGGGAAATCTATTTGTTCTTTCTTTTATGTTTAATATTGTACCTGTTGTATTATTCTATTATATGTTATATCACACTTTCCCTATTATTTGCTATTACTTGGTTGCTATGTCTTGTTTAATGTTGTCTTATCCTTTTCAAATTGCTTTGTTATGCGTTACTGAGCTGAGGGTCTTTCAGAAACAACCTCTCTATCTCTACGAGATAGGATAAGGTCTGTGTATTCTCTACCCTCCCAGACCCCACTGTGGGAATACAGCGGATATGATGTTGTTGTTATTGTATAGTTGATTATGCTAGTAGGGTGAAAAGATGAATGGCCCTTCACATGTAACTACATATAGTGTGTACATGTATTTGTATAAAATCCAATATTCTAACATGTGGTGAGAATTATCTTTTGTGGTTTCAGTTACTTGATGTCTAGGCTTCTTATTGGATATTCACCATTTGATCTGAACAGGTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAGGTTAGGCTATGAACTATGTTGTTTTGTATCCAAGTCTTGTTTTTTTCTTATGGACACCATTTGGAATTTTTTTTGCTTTTTTATGCTTCTAGGTGGAGAGAATTTCTTCCTATTTTATTGAAAAAGACAGAATAGCTAATTAGACACCCTTAAGTTGCACTAGATTGTGTTCCCGCCCCCCAGCTTTACAGGATTTCATTTAGGCAAGTATGTGTTCAATATTAGTGTTTTTAACCCTTTTGACCACCCTGTGTGGTCCTTGATCACTATCCACATGAGATAATATGCCAGACCATCATCTATATTTACAAAAGCAATTATCCATCCCCATTTTTTCGTTCCTTATCTTCCCCATCCCTCTAAGTCATTCCCATATCTCTTCCCCATCCACCATCACCTCGCACCACTACCCACCTCTAGCAACTTCTTGAAATCAAAATACTTTTAGATCTTTGAATTTGATTCACTGTTGATAACAATGCATTGTGGGTCATAAAAAAGATTATTTGATGGATTAGAAATCAACAAGGTATGAGGAAATTTTGACTTGAATCCTTCTCTAGCTGAGAGAGATGAAGTCATGTAGATCATTTGGACCTTGTGGTTATATTGCACAGTATCTGTGCATTCATGTTATTGATTTATCAAAAAAGATTAAAGACAGATTCTTGTAGAATTTTCAAGGATCCTAAATAAGTTGGTTCAATCTTTGGTCTTAGCTTAGTACCTTTTTTCTACAAATACACAGTTCAGCTGCAGTGTGCATTATGTTGTGGTCCTTTTTCTGAACATGGAGTGATGCTTATTATCTAATTTAAAGAAGAGTATTCCAACTATGTGCTACAATAATCTATACAAAGTTGTGTGTTCTTTCCTAGTTGTGCACGTTGAATGGAATTTGGAGGATATTAAGCTTATAACTACATTAAAAAAAAAGATTTTGGAGGACATGTGTTCCTTTTGTCTACCTTGACTATTCCACTGGGCACTTGTATCCTCTTGGAAACTCTGTCCAGCGTGTTTAAGCACAATTGGAAGAAATTACCCTGTATATATGCCTCTGCTGGAACTGGAAGACAGAGACATTGCGGTTCCAGTTTCATTGACCACCTGGAACCTGGCCATAAGTCAACCTCGGTGCTTACATGTGTTAAAATACCTTATTCTGATTTCACCATAATGGATGGATGTGATTCAACCACGTCACAAAAATTGTACCTGTTTGAAAACACCGAGTAAAGAAAATGTTAAAACTTGTATTTGGTTCTTTAGTATCTCATACCCTTTTTTAGTTTTACCCGGAGTGATTTTATTTTGAGTGCTTTTATGATGTTGGGTAAGGAACTGTTGGAGCCCCCATGCAAAAAGAAAACATAAATCCCTGCTTTCAAGCATGAACGCATCTACAAAGGGAAAAAGAAATGGAAAATAGAACATAGTCTGTATTTAGTTTTGTTTATGTTATCTCTTGGAAGGTCTATTAAACCTTGTTTAAGTTATATCTGTAAACATTTCATGAGTAAATGGCTTCCATTCTTGTCGAAACATAAGTTGGTAGGGCTGCTCAAAACATAAAACTAAAAAATAAACAATATTGGACAAGATGTATGGACTATGTGATTAAACTGGATATGTTGTTGGACAATATGTATAAAAAATATGTACATTATTTGAGTATTGCATATCAGCTAGTTGAGGAGATTGGGGTTCAAAATCCTAACTGAGACAGAAAATATCTGGTGATTTCTTTCATCTTCCTAGGCATTGGACAGGGTTACTCGGTATTTATGGTGGTGGAAGGTAGTGGGTACCTGGTGGAATAGTTGAGGTGGATGCAAGCTGGTATTTACATTATATAATATAAAATGAGCACGTCTAATGAGGCAGTTTCAAATATGTGATTTCTGCATTGCATTGTCTTGTTTTTGTTCATTCTTCTTTTATGCTTACAAAAAGCAGACGAGGGAGTATGCTAAGCTTCTTTCTTTTGCGTGCATATTCACTTTCCAAGCAAATCCATGATATGAGAAACACAAATAGTTTATGCACCTCCGGGCTCTGGACATATATTTTTGTGCTACTACTATCTGAAGTTTCTTGGTAAATCTTAAGCATATCAAGGTTGGATCAAGAAGATGTAAGAATTTCTGGTCATATGCAATCAAAATAGGATGTACTGTATGATAATTTTAACCTTGTCAAAAAAGTATGTATACTACTAAATTTATTGATGTTTCACTGAATATGCAATGTAGTTTTTAGAAGATTCCAAAAAAGTATGTTTATTGCTAAATTTATTGATGTTTCACTGAATATGCATTGTAGTTTTCAGAAGATGCCATCCTAAAATCTTCAGGTTTCAGGTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGACCTCTTTTAACTGGTGACTTGCAAATTACACTCAAGGAAGGCGTTGGAACTTTGGGGGATCTCACATTTACAGACAATTCAAGTTGGATAAGGAGCAGGAAGTTCAGACTTGGCATGAAAGTTGCTTCTGGATATTGTGAA</genome_strand>
        <mrna_strand>CCTATTAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAG....................................................................................................................................................................................................................GGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGAAAGACACCTCTTTTAACTGGTGACTTGCAAATTACACTCAAGGAAGGCGTTGGAACTTTGGGGGATCTCACCTTTACAGACCATTCAAGTTGGATAAGGAGCAGGAAGTTCCGACTTGGCATGAAAGTTGCTTCTGGATATTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314250" ref_strand="+" ref_description="SGN-E314250 [cTOA-21-L11]">
      <seq>agaaatctcttaggttcaactaaagtttcaagaattaccaatcagggaaaaaagaaggtatttgtctaaatgcagactaggtatatggagaggacaaaatctatgaagaggagcttggagggtgatgatgaacagcctcctgagcgtaaaagacctgctttagctagtgttattgtggaagctctcaaggtggatagtcttcaaaagctctgctcatctttggaaccgattcttcggagagttgttagtgaagaggtggaacgagcattggctaagttaggccctgccagaattgctggaaggtcatctcctaagagaattgaagggcccgatggaagtaacttgcagcttcagtttaggtctaggctatctttgcctctgttcactggaggcaaagtagaaggagagcatggtgctgctatccatgttgtcttaattgacacaactactggccatcttgtgactgctggtcctgaatcatgtataaaactggacgttgttgtgctagaaggtgatttcaacaatgaagaagatgaaggatggacacaagaagaatttgacggtcatgttgttaaagagcgtgaaggatagagacctcttttaactggtgacttgcaaattacactcaaggaaggcgttggaactttgggggatctcacatttacagacaattcaagttggataaggagcaggaagttcagacttggcatgaaagttgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="31475" stop="36686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31775" g_stop="31819" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31820" i_stop="32031" i_length="212">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32032" g_stop="32153" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="167" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32154" i_stop="32743" i_length="590">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32744" g_stop="32819" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="243" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32820" i_stop="33544" i_length="725">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33545" g_stop="33603" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="302" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33604" i_stop="35966" i_length="2363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35967" g_stop="36386" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="722" r_length="420" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E314250" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31775" e_stop="31819"/>
          <exon e_start="32032" e_stop="32153"/>
          <exon e_start="32744" e_stop="32819"/>
          <exon e_start="33545" e_stop="33603"/>
          <exon e_start="35967" e_stop="36386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAGGTGAATTTTACTGAAAACCCCACTTGTAAAGTTGTGATCTTTATGGATATTATGTGGATATTTTTTTTGTGTGTAAATAAATTAGGGTTTTGATGTGGGGATCTTGAATTTTGTGTATTTGGGTGTTGTGGGAAATTTTCTTGAATGAACTTAAAGATCTGTTGGATTGTTTTGTTGATTGTTGTTTGTTTTGTTATTTGTGGTGAATTTAGGGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAGGTAAAGCTTTGTAACTTAATTTTTCTTGAATTTGAGTGATTTTTTTTGTTAATTTTGGTACATGAAGTTGGTCACTTGTGGGATTTCACTTAGGTATGTTGTTGTTGTTACATGAAGGGTTATTTGCTAGTTATTTAACTTGAATCTGTGCTAAGTCTATCACTTTGGATGTTTTATGCAGAAACTGAAATTTATCATTGTAATTGTTGAAAGGTTAATCCTGTTGAAGTAAAAGTTAGAATGTTTAATCCTGTTGAAGTAAAAATTTATCACAGTTTGACCAATGTGTATGGGTTAGTATATAGGAAACAATATACTAACAAGCAACATGTATTTTAACGATTCTCTTTCTGCTGTGTTTTCTTGTTATTTTGGGTTTCTTCTTCTTTTAATGGGGAAGGCTTTTAATGGGCGATGCTCTGTCAGTTAAAGCGATGGGCTCTGGAGACAACTAAGTACATACTTTTGTGGCGTTACTTACTTGTGGTTTTTCCTCACATTGCTAAAATAGTCAACTACAGAAGTTTACCTGTATGTTTTTTTTCTCTTCTTAAAAGAAATTTGAGATTATCAAATGATATTTTATGCAGTGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTTGTAAGATATATAACATTAGGATTTATTTATTTTCCTGTCATTCCTTTCATAATCTTCAATTGGTTGATAGTGTCATCCTGCTAGGAAATATGTTTCCACATTAAGTTTATCATCTATGTAAAAGAAAGTCTGTTTTGGAGGTCAGGTCTCCATGCTTTTTTGTTGCATCATAATTTTTTGCTCTTTTTGTTTTTATGTGGAATTTGAACTTGGGAATTCATCTTGACCAGTTGCCGATATTTTCTCTGATAAGGGTTATTTAGTGGGAAATCTATTTGTTCTTTCTTTTATGTTTAATATTGTACCTGTTGTATTATTCTATTATATGTTATATCACACTTTCCCTATTATTTGCTATTACTTGGTTGCTATGTCTTGTTTAATGTTGTCTTATCCTTTTCAAATTGCTTTGTTATGCGTTACTGAGCTGAGGGTCTTTCAGAAACAACCTCTCTATCTCTACGAGATAGGATAAGGTCTGTGTATTCTCTACCCTCCCAGACCCCACTGTGGGAATACAGCGGATATGATGTTGTTGTTATTGTATAGTTGATTATGCTAGTAGGGTGAAAAGATGAATGGCCCTTCACATGTAACTACATATAGTGTGTACATGTATTTGTATAAAATCCAATATTCTAACATGTGGTGAGAATTATCTTTTGTGGTTTCAGTTACTTGATGTCTAGGCTTCTTATTGGATATTCACCATTTGATCTGAACAGGTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAGGTTAGGCTATGAACTATGTTGTTTTGTATCCAAGTCTTGTTTTTTTCTTATGGACACCATTTGGAATTTTTTTTGCTTTTTTATGCTTCTAGGTGGAGAGAATTTCTTCCTATTTTATTGAAAAAGACAGAATAGCTAATTAGACACCCTTAAGTTGCACTAGATTGTGTTCCCGCCCCCCAGCTTTACAGGATTTCATTTAGGCAAGTATGTGTTCAATATTAGTGTTTTTAACCCTTTTGACCACCCTGTGTGGTCCTTGATCACTATCCACATGAGATAATATGCCAGACCATCATCTATATTTACAAAAGCAATTATCCATCCCCATTTTTTCGTTCCTTATCTTCCCCATCCCTCTAAGTCATTCCCATATCTCTTCCCCATCCACCATCACCTCGCACCACTACCCACCTCTAGCAACTTCTTGAAATCAAAATACTTTTAGATCTTTGAATTTGATTCACTGTTGATAACAATGCATTGTGGGTCATAAAAAAGATTATTTGATGGATTAGAAATCAACAAGGTATGAGGAAATTTTGACTTGAATCCTTCTCTAGCTGAGAGAGATGAAGTCATGTAGATCATTTGGACCTTGTGGTTATATTGCACAGTATCTGTGCATTCATGTTATTGATTTATCAAAAAAGATTAAAGACAGATTCTTGTAGAATTTTCAAGGATCCTAAATAAGTTGGTTCAATCTTTGGTCTTAGCTTAGTACCTTTTTTCTACAAATACACAGTTCAGCTGCAGTGTGCATTATGTTGTGGTCCTTTTTCTGAACATGGAGTGATGCTTATTATCTAATTTAAAGAAGAGTATTCCAACTATGTGCTACAATAATCTATACAAAGTTGTGTGTTCTTTCCTAGTTGTGCACGTTGAATGGAATTTGGAGGATATTAAGCTTATAACTACATTAAAAAAAAAGATTTTGGAGGACATGTGTTCCTTTTGTCTACCTTGACTATTCCACTGGGCACTTGTATCCTCTTGGAAACTCTGTCCAGCGTGTTTAAGCACAATTGGAAGAAATTACCCTGTATATATGCCTCTGCTGGAACTGGAAGACAGAGACATTGCGGTTCCAGTTTCATTGACCACCTGGAACCTGGCCATAAGTCAACCTCGGTGCTTACATGTGTTAAAATACCTTATTCTGATTTCACCATAATGGATGGATGTGATTCAACCACGTCACAAAAATTGTACCTGTTTGAAAACACCGAGTAAAGAAAATGTTAAAACTTGTATTTGGTTCTTTAGTATCTCATACCCTTTTTTAGTTTTACCCGGAGTGATTTTATTTTGAGTGCTTTTATGATGTTGGGTAAGGAACTGTTGGAGCCCCCATGCAAAAAGAAAACATAAATCCCTGCTTTCAAGCATGAACGCATCTACAAAGGGAAAAAGAAATGGAAAATAGAACATAGTCTGTATTTAGTTTTGTTTATGTTATCTCTTGGAAGGTCTATTAAACCTTGTTTAAGTTATATCTGTAAACATTTCATGAGTAAATGGCTTCCATTCTTGTCGAAACATAAGTTGGTAGGGCTGCTCAAAACATAAAACTAAAAAATAAACAATATTGGACAAGATGTATGGACTATGTGATTAAACTGGATATGTTGTTGGACAATATGTATAAAAAATATGTACATTATTTGAGTATTGCATATCAGCTAGTTGAGGAGATTGGGGTTCAAAATCCTAACTGAGACAGAAAATATCTGGTGATTTCTTTCATCTTCCTAGGCATTGGACAGGGTTACTCGGTATTTATGGTGGTGGAAGGTAGTGGGTACCTGGTGGAATAGTTGAGGTGGATGCAAGCTGGTATTTACATTATATAATATAAAATGAGCACGTCTAATGAGGCAGTTTCAAATATGTGATTTCTGCATTGCATTGTCTTGTTTTTGTTCATTCTTCTTTTATGCTTACAAAAAGCAGACGAGGGAGTATGCTAAGCTTCTTTCTTTTGCGTGCATATTCACTTTCCAAGCAAATCCATGATATGAGAAACACAAATAGTTTATGCACCTCCGGGCTCTGGACATATATTTTTGTGCTACTACTATCTGAAGTTTCTTGGTAAATCTTAAGCATATCAAGGTTGGATCAAGAAGATGTAAGAATTTCTGGTCATATGCAATCAAAATAGGATGTACTGTATGATAATTTTAACCTTGTCAAAAAAGTATGTATACTACTAAATTTATTGATGTTTCACTGAATATGCAATGTAGTTTTTAGAAGATTCCAAAAAAGTATGTTTATTGCTAAATTTATTGATGTTTCACTGAATATGCATTGTAGTTTTCAGAAGATGCCATCCTAAAATCTTCAGGTTTCAGGTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGACCTCTTTTAACTGGTGACTTGCAAATTACACTCAAGGAAGGCGTTGGAACTTTGGGGGATCTCACATTTACAGACAATTCAAGTTGGATAAGGAGCAGGAAGTTCAGACTTGGCATGAAAGTTGCTTC</genome_strand>
        <mrna_strand>AGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAG....................................................................................................................................................................................................................GGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGATAGAGACCTCTTTTAACTGGTGACTTGCAAATTACACTCAAGGAAGGCGTTGGAACTTTGGGGGATCTCACATTTACAGACAATTCAAGTTGGATAAGGAGCAGGAAGTTCAGACTTGGCATGAAAGTTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363884" ref_strand="+" ref_description="SGN-E363884 [cLPT-10-B6]">
      <seq>tcaactaaagtttcaagaattaccaatcaggaaaaaaaaaggtatttgtctaaatgcagactaggtatatggagaggacaaaatctatgaagaggagcttggagggtgatgatgaacagccgcctgagcgtaaaagacctgctttagctagtgttattgtggaagctctcaaggcggatagtcttcaaaagctctgctcatctttggaaccgattcttcggagagttgttagtgaagaggtggaacgagcattggctaagttaggccctgccagaattgctggaaggtcatctcctaagagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="31490" stop="36285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31790" g_stop="31819" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31820" i_stop="32031" i_length="212">
            <donor d_prob="0.943" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32032" g_stop="32153" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="151" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32154" i_stop="32743" i_length="590">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32744" g_stop="32819" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="227" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32820" i_stop="33544" i_length="725">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33545" g_stop="33603" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="286" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33604" i_stop="35966" i_length="2363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35967" g_stop="35985" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="305" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E363884" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31790" e_stop="31819"/>
          <exon e_start="32032" e_stop="32153"/>
          <exon e_start="32744" e_stop="32819"/>
          <exon e_start="33545" e_stop="33603"/>
          <exon e_start="35967" e_stop="35985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTAAAGTTTCAAGAATTACCAATCAGGTGAATTTTACTGAAAACCCCACTTGTAAAGTTGTGATCTTTATGGATATTATGTGGATATTTTTTTTGTGTGTAAATAAATTAGGGTTTTGATGTGGGGATCTTGAATTTTGTGTATTTGGGTGTTGTGGGAAATTTTCTTGAATGAACTTAAAGATCTGTTGGATTGTTTTGTTGATTGTTGTTTGTTTTGTTATTTGTGGTGAATTTAGGGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAGGTAAAGCTTTGTAACTTAATTTTTCTTGAATTTGAGTGATTTTTTTTGTTAATTTTGGTACATGAAGTTGGTCACTTGTGGGATTTCACTTAGGTATGTTGTTGTTGTTACATGAAGGGTTATTTGCTAGTTATTTAACTTGAATCTGTGCTAAGTCTATCACTTTGGATGTTTTATGCAGAAACTGAAATTTATCATTGTAATTGTTGAAAGGTTAATCCTGTTGAAGTAAAAGTTAGAATGTTTAATCCTGTTGAAGTAAAAATTTATCACAGTTTGACCAATGTGTATGGGTTAGTATATAGGAAACAATATACTAACAAGCAACATGTATTTTAACGATTCTCTTTCTGCTGTGTTTTCTTGTTATTTTGGGTTTCTTCTTCTTTTAATGGGGAAGGCTTTTAATGGGCGATGCTCTGTCAGTTAAAGCGATGGGCTCTGGAGACAACTAAGTACATACTTTTGTGGCGTTACTTACTTGTGGTTTTTCCTCACATTGCTAAAATAGTCAACTACAGAAGTTTACCTGTATGTTTTTTTTCTCTTCTTAAAAGAAATTTGAGATTATCAAATGATATTTTATGCAGTGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTTGTAAGATATATAACATTAGGATTTATTTATTTTCCTGTCATTCCTTTCATAATCTTCAATTGGTTGATAGTGTCATCCTGCTAGGAAATATGTTTCCACATTAAGTTTATCATCTATGTAAAAGAAAGTCTGTTTTGGAGGTCAGGTCTCCATGCTTTTTTGTTGCATCATAATTTTTTGCTCTTTTTGTTTTTATGTGGAATTTGAACTTGGGAATTCATCTTGACCAGTTGCCGATATTTTCTCTGATAAGGGTTATTTAGTGGGAAATCTATTTGTTCTTTCTTTTATGTTTAATATTGTACCTGTTGTATTATTCTATTATATGTTATATCACACTTTCCCTATTATTTGCTATTACTTGGTTGCTATGTCTTGTTTAATGTTGTCTTATCCTTTTCAAATTGCTTTGTTATGCGTTACTGAGCTGAGGGTCTTTCAGAAACAACCTCTCTATCTCTACGAGATAGGATAAGGTCTGTGTATTCTCTACCCTCCCAGACCCCACTGTGGGAATACAGCGGATATGATGTTGTTGTTATTGTATAGTTGATTATGCTAGTAGGGTGAAAAGATGAATGGCCCTTCACATGTAACTACATATAGTGTGTACATGTATTTGTATAAAATCCAATATTCTAACATGTGGTGAGAATTATCTTTTGTGGTTTCAGTTACTTGATGTCTAGGCTTCTTATTGGATATTCACCATTTGATCTGAACAGGTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAGGTTAGGCTATGAACTATGTTGTTTTGTATCCAAGTCTTGTTTTTTTCTTATGGACACCATTTGGAATTTTTTTTGCTTTTTTATGCTTCTAGGTGGAGAGAATTTCTTCCTATTTTATTGAAAAAGACAGAATAGCTAATTAGACACCCTTAAGTTGCACTAGATTGTGTTCCCGCCCCCCAGCTTTACAGGATTTCATTTAGGCAAGTATGTGTTCAATATTAGTGTTTTTAACCCTTTTGACCACCCTGTGTGGTCCTTGATCACTATCCACATGAGATAATATGCCAGACCATCATCTATATTTACAAAAGCAATTATCCATCCCCATTTTTTCGTTCCTTATCTTCCCCATCCCTCTAAGTCATTCCCATATCTCTTCCCCATCCACCATCACCTCGCACCACTACCCACCTCTAGCAACTTCTTGAAATCAAAATACTTTTAGATCTTTGAATTTGATTCACTGTTGATAACAATGCATTGTGGGTCATAAAAAAGATTATTTGATGGATTAGAAATCAACAAGGTATGAGGAAATTTTGACTTGAATCCTTCTCTAGCTGAGAGAGATGAAGTCATGTAGATCATTTGGACCTTGTGGTTATATTGCACAGTATCTGTGCATTCATGTTATTGATTTATCAAAAAAGATTAAAGACAGATTCTTGTAGAATTTTCAAGGATCCTAAATAAGTTGGTTCAATCTTTGGTCTTAGCTTAGTACCTTTTTTCTACAAATACACAGTTCAGCTGCAGTGTGCATTATGTTGTGGTCCTTTTTCTGAACATGGAGTGATGCTTATTATCTAATTTAAAGAAGAGTATTCCAACTATGTGCTACAATAATCTATACAAAGTTGTGTGTTCTTTCCTAGTTGTGCACGTTGAATGGAATTTGGAGGATATTAAGCTTATAACTACATTAAAAAAAAAGATTTTGGAGGACATGTGTTCCTTTTGTCTACCTTGACTATTCCACTGGGCACTTGTATCCTCTTGGAAACTCTGTCCAGCGTGTTTAAGCACAATTGGAAGAAATTACCCTGTATATATGCCTCTGCTGGAACTGGAAGACAGAGACATTGCGGTTCCAGTTTCATTGACCACCTGGAACCTGGCCATAAGTCAACCTCGGTGCTTACATGTGTTAAAATACCTTATTCTGATTTCACCATAATGGATGGATGTGATTCAACCACGTCACAAAAATTGTACCTGTTTGAAAACACCGAGTAAAGAAAATGTTAAAACTTGTATTTGGTTCTTTAGTATCTCATACCCTTTTTTAGTTTTACCCGGAGTGATTTTATTTTGAGTGCTTTTATGATGTTGGGTAAGGAACTGTTGGAGCCCCCATGCAAAAAGAAAACATAAATCCCTGCTTTCAAGCATGAACGCATCTACAAAGGGAAAAAGAAATGGAAAATAGAACATAGTCTGTATTTAGTTTTGTTTATGTTATCTCTTGGAAGGTCTATTAAACCTTGTTTAAGTTATATCTGTAAACATTTCATGAGTAAATGGCTTCCATTCTTGTCGAAACATAAGTTGGTAGGGCTGCTCAAAACATAAAACTAAAAAATAAACAATATTGGACAAGATGTATGGACTATGTGATTAAACTGGATATGTTGTTGGACAATATGTATAAAAAATATGTACATTATTTGAGTATTGCATATCAGCTAGTTGAGGAGATTGGGGTTCAAAATCCTAACTGAGACAGAAAATATCTGGTGATTTCTTTCATCTTCCTAGGCATTGGACAGGGTTACTCGGTATTTATGGTGGTGGAAGGTAGTGGGTACCTGGTGGAATAGTTGAGGTGGATGCAAGCTGGTATTTACATTATATAATATAAAATGAGCACGTCTAATGAGGCAGTTTCAAATATGTGATTTCTGCATTGCATTGTCTTGTTTTTGTTCATTCTTCTTTTATGCTTACAAAAAGCAGACGAGGGAGTATGCTAAGCTTCTTTCTTTTGCGTGCATATTCACTTTCCAAGCAAATCCATGATATGAGAAACACAAATAGTTTATGCACCTCCGGGCTCTGGACATATATTTTTGTGCTACTACTATCTGAAGTTTCTTGGTAAATCTTAAGCATATCAAGGTTGGATCAAGAAGATGTAAGAATTTCTGGTCATATGCAATCAAAATAGGATGTACTGTATGATAATTTTAACCTTGTCAAAAAAGTATGTATACTACTAAATTTATTGATGTTTCACTGAATATGCAATGTAGTTTTTAGAAGATTCCAAAAAAGTATGTTTATTGCTAAATTTATTGATGTTTCACTGAATATGCATTGTAGTTTTCAGAAGATGCCATCCTAAAATCTTCAGGTTTCAGGTCATCTCCTAAGAGAATT</genome_strand>
        <mrna_strand>TCAACTAAAGTTTCAAGAATTACCAATCA-....................................................................................................................................................................................................................GGAAAAAAAAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCGCCTGAGCGTAAAAGACCTGCTTTAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATTGTGGAAGCTCTCAAGGCGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCTCCTAAGAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573915" ref_strand="+" ref_description="SGN-E573915 [33301]">
      <seq>agaattaccaaatcaggtatttgtctaaatgcagactaggtatatggagaggacaaaatctatgaagaggagcttggaggatgatgatgaccagccgccagagcgtaaaagacctgctttagctagtgttattgtggaagctctcaaggtggatagtcttcaaaagctctgctcgtcgttggaaccgattcttcggagagttgttagtgaagaggtggaacgagcattggctaaattaggccctgccagaattgctggaaggtcatctcctaagagaattgaagggcccgatggaagtaacttgcagcttcagtttaggtctaggctatctttgcctctgttcactggaggcaaagtagaaggagagcatggcgctgctatccatgttgtcttaattgacacaaatactggccatcttgtgactactggtcctgaatcatgtataaaactggacgttgttgtgctagaaggtgatttcaaccaatgaaccatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="31737" stop="36499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32032" g_stop="32153" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="126" r_length="122" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32154" i_stop="32743" i_length="590">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32744" g_stop="32819" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="202" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32820" i_stop="33544" i_length="725">
            <donor d_prob="0.928" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33545" g_stop="33603" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="261" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33604" i_stop="35966" i_length="2363">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35967" g_stop="36199" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="496" r_length="235" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E573915" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32032" e_stop="32153"/>
          <exon e_start="32744" e_stop="32819"/>
          <exon e_start="33545" e_stop="33603"/>
          <exon e_start="35967" e_stop="36199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAGGTAAAGCTTTGTAACTTAATTTTTCTTGAATTTGAGTGATTTTTTTTGTTAATTTTGGTACATGAAGTTGGTCACTTGTGGGATTTCACTTAGGTATGTTGTTGTTGTTACATGAAGGGTTATTTGCTAGTTATTTAACTTGAATCTGTGCTAAGTCTATCACTTTGGATGTTTTATGCAGAAACTGAAATTTATCATTGTAATTGTTGAAAGGTTAATCCTGTTGAAGTAAAAGTTAGAATGTTTAATCCTGTTGAAGTAAAAATTTATCACAGTTTGACCAATGTGTATGGGTTAGTATATAGGAAACAATATACTAACAAGCAACATGTATTTTAACGATTCTCTTTCTGCTGTGTTTTCTTGTTATTTTGGGTTTCTTCTTCTTTTAATGGGGAAGGCTTTTAATGGGCGATGCTCTGTCAGTTAAAGCGATGGGCTCTGGAGACAACTAAGTACATACTTTTGTGGCGTTACTTACTTGTGGTTTTTCCTCACATTGCTAAAATAGTCAACTACAGAAGTTTACCTGTATGTTTTTTTTCTCTTCTTAAAAGAAATTTGAGATTATCAAATGATATTTTATGCAGTGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTTGTAAGATATATAACATTAGGATTTATTTATTTTCCTGTCATTCCTTTCATAATCTTCAATTGGTTGATAGTGTCATCCTGCTAGGAAATATGTTTCCACATTAAGTTTATCATCTATGTAAAAGAAAGTCTGTTTTGGAGGTCAGGTCTCCATGCTTTTTTGTTGCATCATAATTTTTTGCTCTTTTTGTTTTTATGTGGAATTTGAACTTGGGAATTCATCTTGACCAGTTGCCGATATTTTCTCTGATAAGGGTTATTTAGTGGGAAATCTATTTGTTCTTTCTTTTATGTTTAATATTGTACCTGTTGTATTATTCTATTATATGTTATATCACACTTTCCCTATTATTTGCTATTACTTGGTTGCTATGTCTTGTTTAATGTTGTCTTATCCTTTTCAAATTGCTTTGTTATGCGTTACTGAGCTGAGGGTCTTTCAGAAACAACCTCTCTATCTCTACGAGATAGGATAAGGTCTGTGTATTCTCTACCCTCCCAGACCCCACTGTGGGAATACAGCGGATATGATGTTGTTGTTATTGTATAGTTGATTATGCTAGTAGGGTGAAAAGATGAATGGCCCTTCACATGTAACTACATATAGTGTGTACATGTATTTGTATAAAATCCAATATTCTAACATGTGGTGAGAATTATCTTTTGTGGTTTCAGTTACTTGATGTCTAGGCTTCTTATTGGATATTCACCATTTGATCTGAACAGGTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAGGTTAGGCTATGAACTATGTTGTTTTGTATCCAAGTCTTGTTTTTTTCTTATGGACACCATTTGGAATTTTTTTTGCTTTTTTATGCTTCTAGGTGGAGAGAATTTCTTCCTATTTTATTGAAAAAGACAGAATAGCTAATTAGACACCCTTAAGTTGCACTAGATTGTGTTCCCGCCCCCCAGCTTTACAGGATTTCATTTAGGCAAGTATGTGTTCAATATTAGTGTTTTTAACCCTTTTGACCACCCTGTGTGGTCCTTGATCACTATCCACATGAGATAATATGCCAGACCATCATCTATATTTACAAAAGCAATTATCCATCCCCATTTTTTCGTTCCTTATCTTCCCCATCCCTCTAAGTCATTCCCATATCTCTTCCCCATCCACCATCACCTCGCACCACTACCCACCTCTAGCAACTTCTTGAAATCAAAATACTTTTAGATCTTTGAATTTGATTCACTGTTGATAACAATGCATTGTGGGTCATAAAAAAGATTATTTGATGGATTAGAAATCAACAAGGTATGAGGAAATTTTGACTTGAATCCTTCTCTAGCTGAGAGAGATGAAGTCATGTAGATCATTTGGACCTTGTGGTTATATTGCACAGTATCTGTGCATTCATGTTATTGATTTATCAAAAAAGATTAAAGACAGATTCTTGTAGAATTTTCAAGGATCCTAAATAAGTTGGTTCAATCTTTGGTCTTAGCTTAGTACCTTTTTTCTACAAATACACAGTTCAGCTGCAGTGTGCATTATGTTGTGGTCCTTTTTCTGAACATGGAGTGATGCTTATTATCTAATTTAAAGAAGAGTATTCCAACTATGTGCTACAATAATCTATACAAAGTTGTGTGTTCTTTCCTAGTTGTGCACGTTGAATGGAATTTGGAGGATATTAAGCTTATAACTACATTAAAAAAAAAGATTTTGGAGGACATGTGTTCCTTTTGTCTACCTTGACTATTCCACTGGGCACTTGTATCCTCTTGGAAACTCTGTCCAGCGTGTTTAAGCACAATTGGAAGAAATTACCCTGTATATATGCCTCTGCTGGAACTGGAAGACAGAGACATTGCGGTTCCAGTTTCATTGACCACCTGGAACCTGGCCATAAGTCAACCTCGGTGCTTACATGTGTTAAAATACCTTATTCTGATTTCACCATAATGGATGGATGTGATTCAACCACGTCACAAAAATTGTACCTGTTTGAAAACACCGAGTAAAGAAAATGTTAAAACTTGTATTTGGTTCTTTAGTATCTCATACCCTTTTTTAGTTTTACCCGGAGTGATTTTATTTTGAGTGCTTTTATGATGTTGGGTAAGGAACTGTTGGAGCCCCCATGCAAAAAGAAAACATAAATCCCTGCTTTCAAGCATGAACGCATCTACAAAGGGAAAAAGAAATGGAAAATAGAACATAGTCTGTATTTAGTTTTGTTTATGTTATCTCTTGGAAGGTCTATTAAACCTTGTTTAAGTTATATCTGTAAACATTTCATGAGTAAATGGCTTCCATTCTTGTCGAAACATAAGTTGGTAGGGCTGCTCAAAACATAAAACTAAAAAATAAACAATATTGGACAAGATGTATGGACTATGTGATTAAACTGGATATGTTGTTGGACAATATGTATAAAAAATATGTACATTATTTGAGTATTGCATATCAGCTAGTTGAGGAGATTGGGGTTCAAAATCCTAACTGAGACAGAAAATATCTGGTGATTTCTTTCATCTTCCTAGGCATTGGACAGGGTTACTCGGTATTTATGGTGGTGGAAGGTAGTGGGTACCTGGTGGAATAGTTGAGGTGGATGCAAGCTGGTATTTACATTATATAATATAAAATGAGCACGTCTAATGAGGCAGTTTCAAATATGTGATTTCTGCATTGCATTGTCTTGTTTTTGTTCATTCTTCTTTTATGCTTACAAAAAGCAGACGAGGGAGTATGCTAAGCTTCTTTCTTTTGCGTGCATATTCACTTTCCAAGCAAATCCATGATATGAGAAACACAAATAGTTTATGCACCTCCGGGCTCTGGACATATATTTTTGTGCTACTACTATCTGAAGTTTCTTGGTAAATCTTAAGCATATCAAGGTTGGATCAAGAAGATGTAAGAATTTCTGGTCATATGCAATCAAAATAGGATGTACTGTATGATAATTTTAACCTTGTCAAAAAAGTATGTATACTACTAAATTTATTGATGTTTCACTGAATATGCAATGTAGTTTTTAGAAGATTCCAAAAAAGTATGTTTATTGCTAAATTTATTGATGTTTCACTGAATATGCATTGTAGTTTTCAGAAGATGCCATCCTAAAATCTTCAGGTTTCAGGTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAA-CAATGAA-GAAGATG</genome_strand>
        <mrna_strand>TTACCAAATCAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGATGATGATGACCAGCCGCCAGAGCGTAAAAGACCTGCTTTAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCGTCGTTGGAACCGATTCTTCGGAGAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGAAGAGGTGGAACGAGCATTGGCTAAATTAGGCCCTGCCAGAATTGCTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGCGCTGCTATCCATGTTGTCTTAATTGACACAAATACTGGCCATCTTGTGACTACTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACCAATGAACCATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330187" ref_strand="+" ref_description="SGN-E330187 [cTOD-4-A19]">
      <seq>gttggatcaagaagatgtttcacgtcatctcctgagagaattgaagggcccgatggaagtaacttgcagcttcagtttaagtctaggctatctttgcctctgttcactggaggcaaagtagaaggagagcatggtgctgctatccatgttgtcttaattgacacaactactggccatcttgtgactgctggtcctgaatcatgtataaaactggacattgttgtgctagaaggtgatttcaacaatgaagaagatgaaggatggacacaagaagaatttgacggtcatgttgttaaagagcgtgaaggaaagagacctcttttaactggtgacttgcaaattacactcaaggaaggcgttggaactttgggggatctcacatttacagacaattcaagttggataacgagcatgaagttcacacttggcatgaaaagtgcttctggatattgtgaaggagtacgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="35658" stop="36709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35725" g_stop="35740" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35741" i_stop="35959" i_length="219">
            <donor d_prob="0.653" d_score="0.00"/>
            <acceptor a_prob="0.716" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35960" g_stop="36409" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="466" r_length="450" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E330187" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35725" e_stop="35740"/>
          <exon e_start="35960" e_stop="36409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGATCAAGAAGATGTAAGAATTTCTGGTCATATGCAATCAAAATAGGATGTACTGTATGATAATTTTAACCTTGTCAAAAAAGTATGTATACTACTAAATTTATTGATGTTTCACTGAATATGCAATGTAGTTTTTAGAAGATTCCAAAAAAGTATGTTTATTGCTAAATTTATTGATGTTTCACTGAATATGCATTGTAGTTTTCAGAAGATGCCATCCTAAAATCTTCAGGTTTCAGGTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGACCTCTTTTAACTGGTGACTTGCAAATTACACTCAAGGAAGGCGTTGGAACTTTGGGGGATCTCACATTTACAGACAATTCAAGTTGGATAAGGAGCAGGAAGTTCAGACTTGGCATGAAAGTTGCTTCTGGATATTGTGAAGGAGTACGCA</genome_strand>
        <mrna_strand>GTTGGATCAAGAAGAT...........................................................................................................................................................................................................................GTTTCACGTCATCTCCTGAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAAGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACATTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGACCTCTTTTAACTGGTGACTTGCAAATTACACTCAAGGAAGGCGTTGGAACTTTGGGGGATCTCACATTTACAGACAATTCAAGTTGGATAACGAGCATGAAGTTCACACTTGGCATGAAAAGTGCTTCTGGATATTGTGAAGGAGTACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728014" ref_strand="+" ref_description="SGN-E728014 [LA16BG03]">
      <seq>gccattttttatgtctattattctgatgattcgaggaacgttggtgttgttttcaacaatatttatgagctgaatggccttatagctggtgaacaatactattcggcagattcactttcagacagccagaaggtatacgtagattctttggtcaagaaggcatatgataattggaatcaagtcgttgaatatgatggcaagtcatttctgaacatcaagcaaaatcaaaatccaagctcttctaggaacgagcttcctgttgggccagtggattaccccaacaccttggttaatcagcttccgcagtcacgccatcctgttccagttcaatccgagcaatcttctatggatcccaacttgctaattggaggttcaggttacaatgacaacatggttgctaggatgcctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatttgcgcctcagcaccaaataaccagcagtcatcagctccagagtacgagatatgacaacaatgttggcctggctcttggtcctccacaatcatcttcattccagacaattacctcatctctcccacaaaccaatcttaatccttttgatgattggtcgcacaacagggacnagggagttgacgaattcttgtctgaggaggaaattcgaatgagaagcaatgaaattcttgagaatgatgatatgcaacatttgctaagacttttcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="36588" stop="38958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36881" g_stop="37012" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37013" i_stop="37247" i_length="235">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37248" g_stop="37485" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="370" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37486" i_stop="38296" i_length="811">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38297" g_stop="38658" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="732" r_length="362" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E728014" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36881" e_stop="37012"/>
          <exon e_start="37248" e_stop="37485"/>
          <exon e_start="38297" e_stop="38658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGCTTTATGTCTATTATTCTGATGATTCGAGGAACGTTGGTGTTGTTTTCAACAATATTTATGAGCTGAATGGCCTTATAGCTGGTGAACAATACTATTCGGCAGATTCACTTTCAGACAGCCAGAAGGTTGTTTATTTTCTTTTATATACTGTTCCTTTGATTTTGAGTTCTCTTTGGGGTTGATATTATTGGATTTCTAACATACTGTGTTAACTCTCTAAGCTATCAGCCTGGTCATTCAACTGACTTTTTCAAAATCTAGAATTGCAATCGAATTTGAAGTGTATTTCATTTAATTGTGGTTCTTACCTTTTGATAAAGAATGTGCCAGCTCTTATATGGACTTTAAATGTTCTTGTAGGTATACGTAGATTCTTTGGTCAAGAAGGCATATGATAATTGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAGGTAACCTGTTAATTTCAAAATTTTTATACTTCTATTGGTGGTAATCAGGGAGTGGTTATCTTCTTTCTTTCGAATAGTTCTGTTTGTTTCATTGCTTTGCCTGGTCTATGAGTCATTGCTGGTATCCTTAGCTGTAATTTGGCTGCTACACATACCATCAATGACTCTTGTACTTTGGCCACTCCCCTCATTTTCATTTGTTTTTGCTTTACAAGCTACATTCGCCGATAGCATTTGTGGAAACGATGTTTCTTAATCGAGAATGTGCAGTGATTTGGAAGGTTGCAGAGTTGTGACAATGGATTGTAGACTAAAAGGAACTTGTCTAATGGATTGTTAAAATGTAATGAGGAAATATTGTTGTGATGTACCGAGACCTTACCCCGTGCCTTTTTGAGGTTGACAGACTGTTTTTAAGAGATCCTTGACTCAAAAGGAAAGTATACTCCACAAGAATAAAAGAAAAGAGACATCAAAGTAGCAAGATACAAACAAATGCTACGACCGCCAGTAATATGAATACTACAAAGAGGACAAGAGGAGACCAGCTCACTCCCTCTCACACAGAAAATGACGACACTCATCTACTTACTAATCTTCTACCCTAATCCTCAACCTCCACACTTTCCTATCTAAAGTCATGTCCTCAGTCAAATGAATTGTGTCATGTCCTATTTGATCGTGTCTGTAGTTTGGTTTCTTAGACTCTTGGAGACCTTTTGTGGTTAAGCTCTCTCTTTCTCCCTTTCCAAACTTATCCTCTGCACTATAAATATCATAATACTGTCATCTTTTAATATTGGTGCAACAGGTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGC</genome_strand>
        <mrna_strand>GCCATTTTTTATGTCTATTATTCTGATGATTCGAGGAACGTTGGTGTTGTTTTCAACAATATTTATGAGCTGAATGGCCTTATAGCTGGTGAACAATACTATTCGGCAGATTCACTTTCAGACAGCCAGAAG...........................................................................................................................................................................................................................................GTATACGTAGATTCTTTGGTCAAGAAGGCATATGATAATTGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACNAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688537" ref_strand="+" ref_description="SGN-E688537 [t3_tus_50_o01]">
      <seq>aagctttatgtctattattctgatgattcgaggaacgttggtgttgttttcaacaatatttatgagctgaatggccttatagctggtgaacaatactattcggcagattcactttcagacagccagaaggtatacgtagattctttggtcaagaaggcatatgataattggaatcaagtcgttgaatatgatggcaagtcatttctgaacatcaagcaaaatcaaaatccaagctcttctaggaacgagcttcctgttgggcctttggattaccccaacaccttggttaatcagcttccgcagtcacgccatcctgttccagttcaatccgagcaatcttctatggatcccaacttgctaattggaggttcaggttacaatgacaacatggttgctaggatgcctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatttgcgcctcagcaccaaataaccagcagtcatcagctccagagtacgagatatgacaacaatgttggcctggctcttggtcctccacaatcatcttcattccagacaattacctcatctctcccacaaaccaatcttaatccttttgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="36584" stop="38841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36884" g_stop="37012" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37013" i_stop="37247" i_length="235">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37248" g_stop="37485" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="367" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37486" i_stop="38296" i_length="811">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38297" g_stop="38541" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="612" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E688537" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36884" e_stop="37012"/>
          <exon e_start="37248" e_stop="37485"/>
          <exon e_start="38297" e_stop="38541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTATGTCTATTATTCTGATGATTCGAGGAACGTTGGTGTTGTTTTCAACAATATTTATGAGCTGAATGGCCTTATAGCTGGTGAACAATACTATTCGGCAGATTCACTTTCAGACAGCCAGAAGGTTGTTTATTTTCTTTTATATACTGTTCCTTTGATTTTGAGTTCTCTTTGGGGTTGATATTATTGGATTTCTAACATACTGTGTTAACTCTCTAAGCTATCAGCCTGGTCATTCAACTGACTTTTTCAAAATCTAGAATTGCAATCGAATTTGAAGTGTATTTCATTTAATTGTGGTTCTTACCTTTTGATAAAGAATGTGCCAGCTCTTATATGGACTTTAAATGTTCTTGTAGGTATACGTAGATTCTTTGGTCAAGAAGGCATATGATAATTGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAGGTAACCTGTTAATTTCAAAATTTTTATACTTCTATTGGTGGTAATCAGGGAGTGGTTATCTTCTTTCTTTCGAATAGTTCTGTTTGTTTCATTGCTTTGCCTGGTCTATGAGTCATTGCTGGTATCCTTAGCTGTAATTTGGCTGCTACACATACCATCAATGACTCTTGTACTTTGGCCACTCCCCTCATTTTCATTTGTTTTTGCTTTACAAGCTACATTCGCCGATAGCATTTGTGGAAACGATGTTTCTTAATCGAGAATGTGCAGTGATTTGGAAGGTTGCAGAGTTGTGACAATGGATTGTAGACTAAAAGGAACTTGTCTAATGGATTGTTAAAATGTAATGAGGAAATATTGTTGTGATGTACCGAGACCTTACCCCGTGCCTTTTTGAGGTTGACAGACTGTTTTTAAGAGATCCTTGACTCAAAAGGAAAGTATACTCCACAAGAATAAAAGAAAAGAGACATCAAAGTAGCAAGATACAAACAAATGCTACGACCGCCAGTAATATGAATACTACAAAGAGGACAAGAGGAGACCAGCTCACTCCCTCTCACACAGAAAATGACGACACTCATCTACTTACTAATCTTCTACCCTAATCCTCAACCTCCACACTTTCCTATCTAAAGTCATGTCCTCAGTCAAATGAATTGTGTCATGTCCTATTTGATCGTGTCTGTAGTTTGGTTTCTTAGACTCTTGGAGACCTTTTGTGGTTAAGCTCTCTCTTTCTCCCTTTCCAAACTTATCCTCTGCACTATAAATATCATAATACTGTCATCTTTTAATATTGGTGCAACAGGTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGAT</genome_strand>
        <mrna_strand>AAGCTTTATGTCTATTATTCTGATGATTCGAGGAACGTTGGTGTTGTTTTCAACAATATTTATGAGCTGAATGGCCTTATAGCTGGTGAACAATACTATTCGGCAGATTCACTTTCAGACAGCCAGAAG...........................................................................................................................................................................................................................................GTATACGTAGATTCTTTGGTCAAGAAGGCATATGATAATTGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCTTTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550828" ref_strand="+" ref_description="SGN-E550828 [TUS-50-O1]">
      <seq>aagctttatgtctattattctgatgattcgaggaacgttggtgttgttttcaacaatatttatgagctgaatggccttatagctggtgaacaatactattcggcagattcactttcagacagccagaaggtatacgtagattctttggtcaagaaggcatatgataattggaatcaagtcgttgaatatgatggcaagtcatttctgaacatcaagcaaaatcaaaatccaagctcttctaggaacgagcttcctgttgggcctttggattaccccaacaccttggttaatcagcttccgcagtcacgccatcctgttccagttcaatccgagcaatcttctatggatcccaacttgctaattggaggttcaggttacaatgacaacatggttgctaggatgcctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatttgcgcctcagcaccaaataaccagcagtcatcagctccagagtacgagatatgacaacaatgttggcctggctcttggtcctccacaatcatcttcattccagacaattacctcatctctcccacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="36584" stop="38817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36884" g_stop="37012" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37013" i_stop="37247" i_length="235">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37248" g_stop="37485" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="367" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37486" i_stop="38296" i_length="811">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38297" g_stop="38517" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="588" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E550828" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36884" e_stop="37012"/>
          <exon e_start="37248" e_stop="37485"/>
          <exon e_start="38297" e_stop="38517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTATGTCTATTATTCTGATGATTCGAGGAACGTTGGTGTTGTTTTCAACAATATTTATGAGCTGAATGGCCTTATAGCTGGTGAACAATACTATTCGGCAGATTCACTTTCAGACAGCCAGAAGGTTGTTTATTTTCTTTTATATACTGTTCCTTTGATTTTGAGTTCTCTTTGGGGTTGATATTATTGGATTTCTAACATACTGTGTTAACTCTCTAAGCTATCAGCCTGGTCATTCAACTGACTTTTTCAAAATCTAGAATTGCAATCGAATTTGAAGTGTATTTCATTTAATTGTGGTTCTTACCTTTTGATAAAGAATGTGCCAGCTCTTATATGGACTTTAAATGTTCTTGTAGGTATACGTAGATTCTTTGGTCAAGAAGGCATATGATAATTGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAGGTAACCTGTTAATTTCAAAATTTTTATACTTCTATTGGTGGTAATCAGGGAGTGGTTATCTTCTTTCTTTCGAATAGTTCTGTTTGTTTCATTGCTTTGCCTGGTCTATGAGTCATTGCTGGTATCCTTAGCTGTAATTTGGCTGCTACACATACCATCAATGACTCTTGTACTTTGGCCACTCCCCTCATTTTCATTTGTTTTTGCTTTACAAGCTACATTCGCCGATAGCATTTGTGGAAACGATGTTTCTTAATCGAGAATGTGCAGTGATTTGGAAGGTTGCAGAGTTGTGACAATGGATTGTAGACTAAAAGGAACTTGTCTAATGGATTGTTAAAATGTAATGAGGAAATATTGTTGTGATGTACCGAGACCTTACCCCGTGCCTTTTTGAGGTTGACAGACTGTTTTTAAGAGATCCTTGACTCAAAAGGAAAGTATACTCCACAAGAATAAAAGAAAAGAGACATCAAAGTAGCAAGATACAAACAAATGCTACGACCGCCAGTAATATGAATACTACAAAGAGGACAAGAGGAGACCAGCTCACTCCCTCTCACACAGAAAATGACGACACTCATCTACTTACTAATCTTCTACCCTAATCCTCAACCTCCACACTTTCCTATCTAAAGTCATGTCCTCAGTCAAATGAATTGTGTCATGTCCTATTTGATCGTGTCTGTAGTTTGGTTTCTTAGACTCTTGGAGACCTTTTGTGGTTAAGCTCTCTCTTTCTCCCTTTCCAAACTTATCCTCTGCACTATAAATATCATAATACTGTCATCTTTTAATATTGGTGCAACAGGTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAA</genome_strand>
        <mrna_strand>AAGCTTTATGTCTATTATTCTGATGATTCGAGGAACGTTGGTGTTGTTTTCAACAATATTTATGAGCTGAATGGCCTTATAGCTGGTGAACAATACTATTCGGCAGATTCACTTTCAGACAGCCAGAAG...........................................................................................................................................................................................................................................GTATACGTAGATTCTTTGGTCAAGAAGGCATATGATAATTGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCTTTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211869" ref_strand="+" ref_description="SGN-E211869 [cLEC-66-N24]">
      <seq>agctttatgtctattattctgatgattcgaggaacgttggtgttgttttcaacaatatttatgagctgaatggccttatagctggtgaacaatactattcggcagattcactttcagacagccagaaggtatacgtagattctttggtcaagaaggcatatgataattggaatcaagtcgttgaatatgatggcaagtcatttctgaacatcaagcaaaatcaaaatccaagctcttctaggaacgagcttcctgttgggccagtggattaccccaacaccttggttaatcagcttccgcagtcacgccatcctgttccagttcaatccgagcaatcttctatggatcccaacttgctaattggaggttcaggttacaatgacaacatggttgctaggatgcctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatttgcgcctcagcaccaaataaccagcagtcatcagctccagagtacgagatatgacaacaatgttggcctggctcttggtcctccacaatcatcttcattccagacaattacctcatctctcccacaaaccaatcttaatccttttgatgattggtcgcacaacagggacaagggagttgacgaattcttgtctgaggangaaattcgaatgagaaagcatgaaattcttgagaatgatgatatgcaacatttgctaagacttttcagcatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="36585" stop="38965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36885" g_stop="37012" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37013" i_stop="37247" i_length="235">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37248" g_stop="37485" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="366" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37486" i_stop="38296" i_length="811">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38297" g_stop="38665" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="735" r_length="369" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E211869" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36885" e_stop="37012"/>
          <exon e_start="37248" e_stop="37485"/>
          <exon e_start="38297" e_stop="38665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTATGTCTATTATTCTGATGATTCGAGGAACGTTGGTGTTGTTTTCAACAATATTTATGAGCTGAATGGCCTTATAGCTGGTGAACAATACTATTCGGCAGATTCACTTTCAGACAGCCAGAAGGTTGTTTATTTTCTTTTATATACTGTTCCTTTGATTTTGAGTTCTCTTTGGGGTTGATATTATTGGATTTCTAACATACTGTGTTAACTCTCTAAGCTATCAGCCTGGTCATTCAACTGACTTTTTCAAAATCTAGAATTGCAATCGAATTTGAAGTGTATTTCATTTAATTGTGGTTCTTACCTTTTGATAAAGAATGTGCCAGCTCTTATATGGACTTTAAATGTTCTTGTAGGTATACGTAGATTCTTTGGTCAAGAAGGCATATGATAATTGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAGGTAACCTGTTAATTTCAAAATTTTTATACTTCTATTGGTGGTAATCAGGGAGTGGTTATCTTCTTTCTTTCGAATAGTTCTGTTTGTTTCATTGCTTTGCCTGGTCTATGAGTCATTGCTGGTATCCTTAGCTGTAATTTGGCTGCTACACATACCATCAATGACTCTTGTACTTTGGCCACTCCCCTCATTTTCATTTGTTTTTGCTTTACAAGCTACATTCGCCGATAGCATTTGTGGAAACGATGTTTCTTAATCGAGAATGTGCAGTGATTTGGAAGGTTGCAGAGTTGTGACAATGGATTGTAGACTAAAAGGAACTTGTCTAATGGATTGTTAAAATGTAATGAGGAAATATTGTTGTGATGTACCGAGACCTTACCCCGTGCCTTTTTGAGGTTGACAGACTGTTTTTAAGAGATCCTTGACTCAAAAGGAAAGTATACTCCACAAGAATAAAAGAAAAGAGACATCAAAGTAGCAAGATACAAACAAATGCTACGACCGCCAGTAATATGAATACTACAAAGAGGACAAGAGGAGACCAGCTCACTCCCTCTCACACAGAAAATGACGACACTCATCTACTTACTAATCTTCTACCCTAATCCTCAACCTCCACACTTTCCTATCTAAAGTCATGTCCTCAGTCAAATGAATTGTGTCATGTCCTATTTGATCGTGTCTGTAGTTTGGTTTCTTAGACTCTTGGAGACCTTTTGTGGTTAAGCTCTCTCTTTCTCCCTTTCCAAACTTATCCTCTGCACTATAAATATCATAATACTGTCATCTTTTAATATTGGTGCAACAGGTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAG</genome_strand>
        <mrna_strand>AGCTTTATGTCTATTATTCTGATGATTCGAGGAACGTTGGTGTTGTTTTCAACAATATTTATGAGCTGAATGGCCTTATAGCTGGTGAACAATACTATTCGGCAGATTCACTTTCAGACAGCCAGAAG...........................................................................................................................................................................................................................................GTATACGTAGATTCTTTGGTCAAGAAGGCATATGATAATTGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGANGAAATTCGAATGAGAAAGCATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263227" ref_strand="+" ref_description="SGN-E263227 [cLEG-62-D8]">
      <seq>tggaatcaagtcgttgaatatgatggcaagtcatttctgaacatcaagcaaaatcaaaatccaagctcttctaggaacgagcttcctgttgggccagtggattaccccaacaccttggttaatcagcttccgcagtcacgccatcctgttccagttcaatccgagcaatcttctatggatcccaacttgctaattggaggttcaggttacaatgacaacatggttgctaggatgcctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatttgcgcctcagcaccaaataaccagcagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="36987" stop="38720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37287" g_stop="37485" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37486" i_stop="38296" i_length="811">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38297" g_stop="38420" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="323" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E263227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37287" e_stop="37485"/>
          <exon e_start="38297" e_stop="38420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAGGTAACCTGTTAATTTCAAAATTTTTATACTTCTATTGGTGGTAATCAGGGAGTGGTTATCTTCTTTCTTTCGAATAGTTCTGTTTGTTTCATTGCTTTGCCTGGTCTATGAGTCATTGCTGGTATCCTTAGCTGTAATTTGGCTGCTACACATACCATCAATGACTCTTGTACTTTGGCCACTCCCCTCATTTTCATTTGTTTTTGCTTTACAAGCTACATTCGCCGATAGCATTTGTGGAAACGATGTTTCTTAATCGAGAATGTGCAGTGATTTGGAAGGTTGCAGAGTTGTGACAATGGATTGTAGACTAAAAGGAACTTGTCTAATGGATTGTTAAAATGTAATGAGGAAATATTGTTGTGATGTACCGAGACCTTACCCCGTGCCTTTTTGAGGTTGACAGACTGTTTTTAAGAGATCCTTGACTCAAAAGGAAAGTATACTCCACAAGAATAAAAGAAAAGAGACATCAAAGTAGCAAGATACAAACAAATGCTACGACCGCCAGTAATATGAATACTACAAAGAGGACAAGAGGAGACCAGCTCACTCCCTCTCACACAGAAAATGACGACACTCATCTACTTACTAATCTTCTACCCTAATCCTCAACCTCCACACTTTCCTATCTAAAGTCATGTCCTCAGTCAAATGAATTGTGTCATGTCCTATTTGATCGTGTCTGTAGTTTGGTTTCTTAGACTCTTGGAGACCTTTTGTGGTTAAGCTCTCTCTTTCTCCCTTTCCAAACTTATCCTCTGCACTATAAATATCATAATACTGTCATCTTTTAATATTGGTGCAACAGGTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCA</genome_strand>
        <mrna_strand>TGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210689" ref_strand="+" ref_description="SGN-E210689 [cLEC-68-B24]">
      <seq>caagtcatttctgaacatcaagcaaaatcaaaatccaagctcttctaggaacgagcttcctgttgggccagtggattaccccaacaccttggttaatcagcttccgcagtcacgccatcctgttccagttcaatccgagcaatcttctatggatcccaacttgctaattggaggttcaggttacaatgacaacatggttgctaggatgcctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatttgcgcctcagcaccaaataaccagcagtcatcagctccagagtacgagatatgacaacaatgttggcctggctcttggtcctccacaatcatcttcattccagacaattacctcatctctcccacaaaccaatcttaatccttttgatgattggtcgcacaacagggacaagggagttgacgaattcttgtctgaggaggaaattcgaatgagaagcaatgaaattcttgagaatgatgatatgcaacatttgctaagacttttcagcatgggaggccatggttctataaatgtgcctgaagatggatatggtttcccatctttcatgccttcgccatctcctagtttcagttatgatgaagaccgcacacggccaggaaaagctgttgttggttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="37013" stop="39090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37313" g_stop="37485" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37486" i_stop="38296" i_length="811">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38297" g_stop="38790" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="667" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E210689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37313" e_stop="37485"/>
          <exon e_start="38297" e_stop="38790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAGGTAACCTGTTAATTTCAAAATTTTTATACTTCTATTGGTGGTAATCAGGGAGTGGTTATCTTCTTTCTTTCGAATAGTTCTGTTTGTTTCATTGCTTTGCCTGGTCTATGAGTCATTGCTGGTATCCTTAGCTGTAATTTGGCTGCTACACATACCATCAATGACTCTTGTACTTTGGCCACTCCCCTCATTTTCATTTGTTTTTGCTTTACAAGCTACATTCGCCGATAGCATTTGTGGAAACGATGTTTCTTAATCGAGAATGTGCAGTGATTTGGAAGGTTGCAGAGTTGTGACAATGGATTGTAGACTAAAAGGAACTTGTCTAATGGATTGTTAAAATGTAATGAGGAAATATTGTTGTGATGTACCGAGACCTTACCCCGTGCCTTTTTGAGGTTGACAGACTGTTTTTAAGAGATCCTTGACTCAAAAGGAAAGTATACTCCACAAGAATAAAAGAAAAGAGACATCAAAGTAGCAAGATACAAACAAATGCTACGACCGCCAGTAATATGAATACTACAAAGAGGACAAGAGGAGACCAGCTCACTCCCTCTCACACAGAAAATGACGACACTCATCTACTTACTAATCTTCTACCCTAATCCTCAACCTCCACACTTTCCTATCTAAAGTCATGTCCTCAGTCAAATGAATTGTGTCATGTCCTATTTGATCGTGTCTGTAGTTTGGTTTCTTAGACTCTTGGAGACCTTTTGTGGTTAAGCTCTCTCTTTCTCCCTTTCCAAACTTATCCTCTGCACTATAAATATCATAATACTGTCATCTTTTAATATTGGTGCAACAGGTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTG</genome_strand>
        <mrna_strand>CAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213366" ref_strand="+" ref_description="SGN-E213366 [cLEC-71-M11]">
      <seq>caagtcatttctgaacatcaagcaaaatcaaaatccaagctcttctaggaacgagcttcctgttgggccagtggattaccccaacaccttggttaatcagcttccgcagtcacgccatcctgttccagttcaatccgagcaatcttctatggatcccaacttgctaattggaggttcaggttacaatgacaacatggttgctaggatgcctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatttgcgcctcagcaccaaataaccagcagtcatcagctccagagtacgagatatgacaacaatgttggcctggctcttggtcctccacaatcatcttcattccagacaattacctcatctctcccacaaaccaatcttaatccttttgatgattggtcgcacaacagggacaagggagttgacgaattcttgtctgaggaggaaattcgaatgagaagcaatgaaattcttgagaatgatgatatgcaacatttgctaagacttttcagcatgggaggccatggttctataaatgtgcctgaagatggatatggtttcccatctttcatgccttcgccatctcctagtttcagttatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="37013" stop="39050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37313" g_stop="37485" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37486" i_stop="38296" i_length="811">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38297" g_stop="38750" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="627" r_length="454" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E213366" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37313" e_stop="37485"/>
          <exon e_start="38297" e_stop="38750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAGGTAACCTGTTAATTTCAAAATTTTTATACTTCTATTGGTGGTAATCAGGGAGTGGTTATCTTCTTTCTTTCGAATAGTTCTGTTTGTTTCATTGCTTTGCCTGGTCTATGAGTCATTGCTGGTATCCTTAGCTGTAATTTGGCTGCTACACATACCATCAATGACTCTTGTACTTTGGCCACTCCCCTCATTTTCATTTGTTTTTGCTTTACAAGCTACATTCGCCGATAGCATTTGTGGAAACGATGTTTCTTAATCGAGAATGTGCAGTGATTTGGAAGGTTGCAGAGTTGTGACAATGGATTGTAGACTAAAAGGAACTTGTCTAATGGATTGTTAAAATGTAATGAGGAAATATTGTTGTGATGTACCGAGACCTTACCCCGTGCCTTTTTGAGGTTGACAGACTGTTTTTAAGAGATCCTTGACTCAAAAGGAAAGTATACTCCACAAGAATAAAAGAAAAGAGACATCAAAGTAGCAAGATACAAACAAATGCTACGACCGCCAGTAATATGAATACTACAAAGAGGACAAGAGGAGACCAGCTCACTCCCTCTCACACAGAAAATGACGACACTCATCTACTTACTAATCTTCTACCCTAATCCTCAACCTCCACACTTTCCTATCTAAAGTCATGTCCTCAGTCAAATGAATTGTGTCATGTCCTATTTGATCGTGTCTGTAGTTTGGTTTCTTAGACTCTTGGAGACCTTTTGTGGTTAAGCTCTCTCTTTCTCCCTTTCCAAACTTATCCTCTGCACTATAAATATCATAATACTGTCATCTTTTAATATTGGTGCAACAGGTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGA</genome_strand>
        <mrna_strand>CAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207547" ref_strand="+" ref_description="SGN-E207547 [cLEC-36-P2]">
      <seq>ttgaaatggtggggcaaaatcaagatccaagctcttctaggaacgagcttcctgttgggccagtggattaccccaacaccttggttaatcagcttccgcagtcacgccatcctgttccagttcaatccgagcaatcttctatggatcccaacttgctaattggaggctcaggttacaatgacaacatgggtgctaggatgcctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatttgcgcctcagcaccaaataaccagcagtcatcagctccagagtacgagatatgacaacaatgttggcctggctcttgggcctccacaatcatcttcattccagacaattacctcatctctcccacaaaccaatcttaatccttttgatgattggtcgcacaacagggacaagggagttgacgaattcttgtctgaggaggaaattcgaatgagaagcaatgaaattcttgagaatgatgatatgcaacatttgctaagacttttcagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="37034" stop="38961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37321" g_stop="37485" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37486" i_stop="38296" i_length="811">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38297" g_stop="38661" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="530" r_length="365" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E207547" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37321" e_stop="37485"/>
          <exon e_start="38297" e_stop="38661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAGGTAACCTGTTAATTTCAAAATTTTTATACTTCTATTGGTGGTAATCAGGGAGTGGTTATCTTCTTTCTTTCGAATAGTTCTGTTTGTTTCATTGCTTTGCCTGGTCTATGAGTCATTGCTGGTATCCTTAGCTGTAATTTGGCTGCTACACATACCATCAATGACTCTTGTACTTTGGCCACTCCCCTCATTTTCATTTGTTTTTGCTTTACAAGCTACATTCGCCGATAGCATTTGTGGAAACGATGTTTCTTAATCGAGAATGTGCAGTGATTTGGAAGGTTGCAGAGTTGTGACAATGGATTGTAGACTAAAAGGAACTTGTCTAATGGATTGTTAAAATGTAATGAGGAAATATTGTTGTGATGTACCGAGACCTTACCCCGTGCCTTTTTGAGGTTGACAGACTGTTTTTAAGAGATCCTTGACTCAAAAGGAAAGTATACTCCACAAGAATAAAAGAAAAGAGACATCAAAGTAGCAAGATACAAACAAATGCTACGACCGCCAGTAATATGAATACTACAAAGAGGACAAGAGGAGACCAGCTCACTCCCTCTCACACAGAAAATGACGACACTCATCTACTTACTAATCTTCTACCCTAATCCTCAACCTCCACACTTTCCTATCTAAAGTCATGTCCTCAGTCAAATGAATTGTGTCATGTCCTATTTGATCGTGTCTGTAGTTTGGTTTCTTAGACTCTTGGAGACCTTTTGTGGTTAAGCTCTCTCTTTCTCCCTTTCCAAACTTATCCTCTGCACTATAAATATCATAATACTGTCATCTTTTAATATTGGTGCAACAGGTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATG</genome_strand>
        <mrna_strand>TTGAAATGGTGGGGCAAAATCAAGATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGTTACAATGACAACATGGGTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGGCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446759" ref_strand="+" ref_description="SGN-E446759 [cSTA-22-J18]">
      <seq>cgagcttcctgttgggccaatggattaccccaacaccttggttaatcagcttccgcagtcacgccatcctgttccagttcaatctgagcaatcttctatggatcccaacttgctagttggaggttcaggttataatgacaacatgaggatgcctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatatgcgcctcagcaccaaataaccagcagtcatcagctccagagtacgagatatgacaacaatgttggcctggctcttggtcctccacaatcatcttcattccagacaattacctcatctctcccacaaaccaatcttaatccttttgatgattggtcacacaacagggacaagggagttgacgaattcttgtctgaggaggaaattcgaatgagaagcaatgaaattcttgagaatgatgatatgcaacaattgctgagacttttcagcatgggaggccatggttctgtaaatgtgcctgaagatggatatggtttcccatctttcatgccttcaccatctcctagtttcagttatgatgaggaccgcacacgccctggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="37064" stop="39071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37364" g_stop="37485" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37486" i_stop="38296" i_length="811">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38297" g_stop="38771" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="591" r_length="469" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E446759" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37364" e_stop="37485"/>
          <exon e_start="38297" e_stop="38771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAGGTAACCTGTTAATTTCAAAATTTTTATACTTCTATTGGTGGTAATCAGGGAGTGGTTATCTTCTTTCTTTCGAATAGTTCTGTTTGTTTCATTGCTTTGCCTGGTCTATGAGTCATTGCTGGTATCCTTAGCTGTAATTTGGCTGCTACACATACCATCAATGACTCTTGTACTTTGGCCACTCCCCTCATTTTCATTTGTTTTTGCTTTACAAGCTACATTCGCCGATAGCATTTGTGGAAACGATGTTTCTTAATCGAGAATGTGCAGTGATTTGGAAGGTTGCAGAGTTGTGACAATGGATTGTAGACTAAAAGGAACTTGTCTAATGGATTGTTAAAATGTAATGAGGAAATATTGTTGTGATGTACCGAGACCTTACCCCGTGCCTTTTTGAGGTTGACAGACTGTTTTTAAGAGATCCTTGACTCAAAAGGAAAGTATACTCCACAAGAATAAAAGAAAAGAGACATCAAAGTAGCAAGATACAAACAAATGCTACGACCGCCAGTAATATGAATACTACAAAGAGGACAAGAGGAGACCAGCTCACTCCCTCTCACACAGAAAATGACGACACTCATCTACTTACTAATCTTCTACCCTAATCCTCAACCTCCACACTTTCCTATCTAAAGTCATGTCCTCAGTCAAATGAATTGTGTCATGTCCTATTTGATCGTGTCTGTAGTTTGGTTTCTTAGACTCTTGGAGACCTTTTGTGGTTAAGCTCTCTCTTTCTCCCTTTCCAAACTTATCCTCTGCACTATAAATATCATAATACTGTCATCTTTTAATATTGGTGCAACAGGTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAA</genome_strand>
        <mrna_strand>CGAGCTTCCTGTTGGGCCAATGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCTGAGCAATCTTCTATGGATCCCAACTTGCTAGTTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGTTATAATGACAACA----TG--AGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATATGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCACACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACAATTGCTGAGACTTTTCAGCATGGGAGGCCATGGTTCTGTAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCACCATCTCCTAGTTTCAGTTATGATGAGGACCGCACACGCCCTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446768" ref_strand="+" ref_description="SGN-E446768 [cSTA-22-L18]">
      <seq>cgagcttcctgttgggccaatggattaccccaacaccttggttaatcagcttccgcagtcacgccatcctgttccagttcaatctgagcaatcttctatggatcccaacttgctagttggaggttcaggttataatgacaacatgaggatgcctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatatgcgcctcagcaccaaataaccagcagtcatcagctccagagtacgagatatgacaacaatgttggcctggctcttggtcctccacaatcatcttcattccagacaattacctcatctctcccacaaaccaatcttaatccttttgatgattggtcacacaacagggacaagggagttgacgaattcttgtctgaggaggaaattcgaatgagaagcaatgaaattcttgagaatgatgatatgcaacaattgctgagacttttcagcatgggaggccatggttctgtaaatgtgcctgaagatggatatggtttcccatctttcatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="37064" stop="39021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37364" g_stop="37485" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37486" i_stop="38296" i_length="811">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38297" g_stop="38721" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="541" r_length="419" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E446768" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37364" e_stop="37485"/>
          <exon e_start="38297" e_stop="38721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAGGTAACCTGTTAATTTCAAAATTTTTATACTTCTATTGGTGGTAATCAGGGAGTGGTTATCTTCTTTCTTTCGAATAGTTCTGTTTGTTTCATTGCTTTGCCTGGTCTATGAGTCATTGCTGGTATCCTTAGCTGTAATTTGGCTGCTACACATACCATCAATGACTCTTGTACTTTGGCCACTCCCCTCATTTTCATTTGTTTTTGCTTTACAAGCTACATTCGCCGATAGCATTTGTGGAAACGATGTTTCTTAATCGAGAATGTGCAGTGATTTGGAAGGTTGCAGAGTTGTGACAATGGATTGTAGACTAAAAGGAACTTGTCTAATGGATTGTTAAAATGTAATGAGGAAATATTGTTGTGATGTACCGAGACCTTACCCCGTGCCTTTTTGAGGTTGACAGACTGTTTTTAAGAGATCCTTGACTCAAAAGGAAAGTATACTCCACAAGAATAAAAGAAAAGAGACATCAAAGTAGCAAGATACAAACAAATGCTACGACCGCCAGTAATATGAATACTACAAAGAGGACAAGAGGAGACCAGCTCACTCCCTCTCACACAGAAAATGACGACACTCATCTACTTACTAATCTTCTACCCTAATCCTCAACCTCCACACTTTCCTATCTAAAGTCATGTCCTCAGTCAAATGAATTGTGTCATGTCCTATTTGATCGTGTCTGTAGTTTGGTTTCTTAGACTCTTGGAGACCTTTTGTGGTTAAGCTCTCTCTTTCTCCCTTTCCAAACTTATCCTCTGCACTATAAATATCATAATACTGTCATCTTTTAATATTGGTGCAACAGGTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCT</genome_strand>
        <mrna_strand>CGAGCTTCCTGTTGGGCCAATGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCTGAGCAATCTTCTATGGATCCCAACTTGCTAGTTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGTTATAATGACAACA----TG--AGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATATGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCACACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACAATTGCTGAGACTTTTCAGCATGGGAGGCCATGGTTCTGTAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704141" ref_strand="+" ref_description="SGN-E704141 [FA23BH03]">
      <seq>gattaccccaacaccttggttaatcagcttccgcagtcacgccatcctgttccagttcaatccgagcaatcttctatggatcccaacttgctaattggaggttcaggttacaatgacaacatggttgctaggatgcctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatttgcgcctcagcaccaaataaccagcagtcatcagctccagagtacgagatatgacaacaatgttggcctggctcttggtcctccacaatcatcttcattccagacaattacctcatctctcccacaaaccaatcttaatccttttgatgattggtcgcacaacagggacaagggagttgacgaattcttgtctgaggaggaaattcgaatgagaagcaatgaaattcttgagaatgatgatatgcaacatttgctaagacttttcagcatgggaggccatggttctgtaaatgtgcctgaagatggatatggtttcccatctttcatgccttcgccatctcctagtttcagttatgatgaagaccgcacacggccaggaaaagctgttgttggttggctgaaaattaaggctgcaatgaggtgggggttctttgtgcggaagaaggcagctgagaggcgtgcacagctcgtggaactggatgatgaataaaatctggtgtggaaacattagggcatttagacttaaccatcgaccatttgaataactattcacaaggccgtggtcatgcangcccgagtaattagctttcgactctagacggtatattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="37086" stop="39301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37386" g_stop="37485" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37486" i_stop="38296" i_length="811">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38297" g_stop="39001" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="805" r_length="705" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E704141" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37386" e_stop="37485"/>
          <exon e_start="38297" e_stop="39001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAGGTAACCTGTTAATTTCAAAATTTTTATACTTCTATTGGTGGTAATCAGGGAGTGGTTATCTTCTTTCTTTCGAATAGTTCTGTTTGTTTCATTGCTTTGCCTGGTCTATGAGTCATTGCTGGTATCCTTAGCTGTAATTTGGCTGCTACACATACCATCAATGACTCTTGTACTTTGGCCACTCCCCTCATTTTCATTTGTTTTTGCTTTACAAGCTACATTCGCCGATAGCATTTGTGGAAACGATGTTTCTTAATCGAGAATGTGCAGTGATTTGGAAGGTTGCAGAGTTGTGACAATGGATTGTAGACTAAAAGGAACTTGTCTAATGGATTGTTAAAATGTAATGAGGAAATATTGTTGTGATGTACCGAGACCTTACCCCGTGCCTTTTTGAGGTTGACAGACTGTTTTTAAGAGATCCTTGACTCAAAAGGAAAGTATACTCCACAAGAATAAAAGAAAAGAGACATCAAAGTAGCAAGATACAAACAAATGCTACGACCGCCAGTAATATGAATACTACAAAGAGGACAAGAGGAGACCAGCTCACTCCCTCTCACACAGAAAATGACGACACTCATCTACTTACTAATCTTCTACCCTAATCCTCAACCTCCACACTTTCCTATCTAAAGTCATGTCCTCAGTCAAATGAATTGTGTCATGTCCTATTTGATCGTGTCTGTAGTTTGGTTTCTTAGACTCTTGGAGACCTTTTGTGGTTAAGCTCTCTCTTTCTCCCTTTCCAAACTTATCCTCTGCACTATAAATATCATAATACTGTCATCTTTTAATATTGGTGCAACAGGTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTAACCATCGACCATTTGAATAACTATTCACAAGGCCGTGGTCATGCAGGCCCGAGTAATTAGCTTTCGACTCTAGACGGTATATTTTC</genome_strand>
        <mrna_strand>GATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTGTAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTAACCATCGACCATTTGAATAACTATTCACAAGGCCGTGGTCATGCANGCCCGAGTAATTAGCTTTCGACTCTAGACGGTATATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466206" ref_strand="+" ref_description="SGN-E466206 [cPRO-23-D19]">
      <seq>gattatcccaacaccttggttaatcagcttccgcagtcacgccatcctgttccagttcaatctgagcaatcttctatggatcccaacttgctagttggaggttcaggttataatgacaacatgaggatggctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatatgcgcctcagcaccaaataaccagcagtcatcagctccagaatacgagatatgacaacaatgttggcctggctcttggtcctccacaatcatcttcattccagacaattacctcatctctcccacaaaccaatcttaatccttttgatgattggtcacacaacagggacaagggagttgacgaattcttgtctgaggaggaaattcgaatgagaagcaatgaaattcttgagaatgatgatatgcaacatttgctgagacttttcagcatgggaggtcatggttctgtaaatgtgcctgaagatggatatggtttcccatctttcatgccttcaccatctcctagtttcagttatgatgaggaccgcacacgcccaggaaaagctgttgtaggttggctgaaaattaaggctgncaatgangtgggggttctttgtgcggaagaaggcagctgagaggcgtgcacagctcgtggaactggatgatgaatgaaatctggtttggaaacattanggcatttagacttaaccatcgaccatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="37086" stop="39231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37386" g_stop="37485" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37486" i_stop="38296" i_length="811">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38297" g_stop="38931" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="730" r_length="630" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E466206" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37386" e_stop="37485"/>
          <exon e_start="38297" e_stop="38931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAGGTAACCTGTTAATTTCAAAATTTTTATACTTCTATTGGTGGTAATCAGGGAGTGGTTATCTTCTTTCTTTCGAATAGTTCTGTTTGTTTCATTGCTTTGCCTGGTCTATGAGTCATTGCTGGTATCCTTAGCTGTAATTTGGCTGCTACACATACCATCAATGACTCTTGTACTTTGGCCACTCCCCTCATTTTCATTTGTTTTTGCTTTACAAGCTACATTCGCCGATAGCATTTGTGGAAACGATGTTTCTTAATCGAGAATGTGCAGTGATTTGGAAGGTTGCAGAGTTGTGACAATGGATTGTAGACTAAAAGGAACTTGTCTAATGGATTGTTAAAATGTAATGAGGAAATATTGTTGTGATGTACCGAGACCTTACCCCGTGCCTTTTTGAGGTTGACAGACTGTTTTTAAGAGATCCTTGACTCAAAAGGAAAGTATACTCCACAAGAATAAAAGAAAAGAGACATCAAAGTAGCAAGATACAAACAAATGCTACGACCGCCAGTAATATGAATACTACAAAGAGGACAAGAGGAGACCAGCTCACTCCCTCTCACACAGAAAATGACGACACTCATCTACTTACTAATCTTCTACCCTAATCCTCAACCTCCACACTTTCCTATCTAAAGTCATGTCCTCAGTCAAATGAATTGTGTCATGTCCTATTTGATCGTGTCTGTAGTTTGGTTTCTTAGACTCTTGGAGACCTTTTGTGGTTAAGCTCTCTCTTTCTCCCTTTCCAAACTTATCCTCTGCACTATAAATATCATAATACTGTCATCTTTTAATATTGGTGCAACAGGTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTG-CAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTAACCATCGACCATTTGA</genome_strand>
        <mrna_strand>GATTATCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCTGAGCAATCTTCTATGGATCCCAACTTGCTAGTTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGTTATAATGACAACA----TG--AGGATGGCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATATGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAATACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCACACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTGAGACTTTTCAGCATGGGAGGTCATGGTTCTGTAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCACCATCTCCTAGTTTCAGTTATGATGAGGACCGCACACGCCCAGGAAAAGCTGTTGTAGGTTGGCTGAAAATTAAGGCTGNCAATGANGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATGAAATCTGGTTTGGAAACATTANGGCATTTAGACTTAACCATCGACCATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550749" ref_strand="+" ref_description="SGN-E550749 [TUS-50-H16]">
      <seq>cctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatttgcgcctcagcaccaaataaccagcagtcatcagctccagagtacgagatatgacaacaatgttggcctggctcttggtcctccacaatcatcttcattccagacaattacctcatctctcccacaaaccaatcttaatccttttgatgattggtcgcacaacagggacaagggagttgacgaattcttgtctgaggaggaaattcgaatgagaagcaatgaaattcttgagaatgatgatatgcaacatttgctaagacttttcagcatgggaggccatggttctataaatgtgcctgaagatggatatggtttcccatctttcatgccttcgccatctcctagtttcagttatgatgaagaccgcacacggccaggaaaagctgttgttggttggctgaaaattaaggctgcaatgaggtgggggttctttgtgcggaagaaggcagctgagaggcgtgcacagctcgtggaactggatgatgaataaaatctggtgtggaaacattagggcatttagactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="38032" stop="39215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38332" g_stop="38915" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E550749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38332" e_stop="38915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTA</genome_strand>
        <mrna_strand>CCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688437" ref_strand="+" ref_description="SGN-E688437 [t3_tus_50_h16]">
      <seq>cctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatttgcgcctcagcaccaaataaccagcagtcatcagctccagagtacgagatatgacaacaatgttggcctggctcttggtcctccacaatcatcttcattccagacaattacctcatctctcccacaaaccaatcttaatccttttgatgattggtcgcacaacagggacaagggagttgacgaattcttgtctgaggaggaaattcgaatgagaagcaatgaaattcttgagaatgatgatatgcaacatttgctaagacttttcagcatgggaggccatggttctataaatgtgcctgaagatggatatggtttcccatctttcatgccttcgccatctcctagtttcagttatgatgaagaccgcacacggccaggaaaagctgttgttggttggctgaaaattaaggctgcaatgaggtgggggttctttgtgcggaagaaggcagctgagaggcgtgcacagctcgtggaactggatgatgaataaaatctggtgtggaaacattagggcatttagactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="38032" stop="39215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38332" g_stop="38915" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E688437" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38332" e_stop="38915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTA</genome_strand>
        <mrna_strand>CCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206834" ref_strand="+" ref_description="SGN-E206834 [cLEC-33-O5]">
      <seq>ctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatttgcgcctcagcaccaaataaccagcagtcatcagctccagagtacgagatatgacaacaatgttggcctggctcttggtcctccacaatcatcttcattccagacaattacctcatctgtcccacaaaccaatcttaatccttttgatgattggtcgcacaacacggacaagggagttgacgaattcttgtctgaggaggaaattccaatgagaagcaatgaaattcttgagaatgatgatatgcaacatttgctaagacttttcagcatgggaggccatggttctataaatgtgcctgaagatggatatggtttcccatctttcatgccttcgccatctgctagtttcagttatgatgaagaccgcacacggccaggaaaagctgttgttggttggctgaaaattaaggctgcaatgaggtgggggttctttgtgcggaagaaggcagctgacaggcgtgcacagctcgcggaactggatgatgaataaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="38033" stop="39186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38333" g_stop="38886" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E206834" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38333" e_stop="38886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTG</genome_strand>
        <mrna_strand>CTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTGTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACACGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCCAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTGCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGACAGGCGTGCACAGCTCGCGGAACTGGATGATGAATAAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602626" ref_strand="+" ref_description="SGN-E602626 [55694]">
      <seq>tttttcccttgggtctgcaaactaatacattacattatatcttgaaacagatagagtgagcatgatggagttaacgatgagagcgttgaaagagaatgtactgtacaggcttctgtacatgaaaaaaaaacaatcaaattgactaatccctcggaaaatatactgtctagagtcgaaagctaattactcgggcctgcatgaccacggccttgtgaatagttattcaaatggtcgatggttaagtctaaatgccctaatgtttccaaaccagatttcattcatcatccagttccacgagctgtgcacgcctctcagctgccttctttcgcacaaagaacccccacctcattgcagccttaattttcagccaacccacaacagcttttcctgggcgtgtgcggtcctcatcataactgaaactaggagatggtgaaggcatgaaagatgggaaaccatatccatcttcaggcacatttacagaaccatgacctcccatgctgaaaagtctcagcaaatgttgcatatcatcattctcaagaatttcattgcttctcattcgaatttcctcctcagacaagaattcgtcaactcccttgtccctgttgtgtgaccaatcatcaaaaggattaagattggtttgtgggagagatgaggtaattgcctgggaatgaagatgattgtggaggaccaagagccaggccaacattgttgtcatatctcgctactctggagctgatgactgcctggttatttggtgctgaggcgcatatggagtgctctcaaactgtgagcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="-" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="39412" stop="38064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39162" g_stop="38364" g_length="799"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="794" r_length="794" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="-" ref_id="SGN-E602626" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39162" e_stop="38364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCCCTTGGGTCTGCAGGACTTATACATTACATTACATCTTGAAACAGATAAAGAGAGTAAGCACGATGGAGTTAACAATGAGAGTGTTAAAAGAGAATTTACTGTACAGGCTTCTGTACATGAAAAAAGAAAAACAATCGAATTGACTAATCCCTCGGAAAATATACCGTCTAGAGTCGAAAGCTAATTACTCGGGCCTGCATGACCACGGCCTTGTGAATAGTTATTCAAATGGTCGATGGTTAAGTCTAAATGCCCTAATGTTTCCACACCAGATTTTATTCATCATCCAGTTCCACGAGCTGTGCACGCCTCTCAGCTGCCTTCTTCCGCACAAAGAACCCCCACCTCATTGCAGCCTTAATTTTCAGCCAACCAACAACAGCTTTTCCTGGCCGTGTGCGGTCTTCATCATAACTGAAACTAGGAGATGGCGAAGGCATGAAAGATGGGAAACCATATCCATCTTCAGGCACATTTATAGAACCATGGCCTCCCATGCTGAAAAGTCTTAGCAAATGTTGCATATCATCATTCTCAAGAATTTCATTGCTTCTCATTCGAATTTCCTCCTCAGACAAGAATTCGTCAACTCCCTTGTCCCTGTTGTGCGACCAATCATCAAAAGGATTAAGATTGGTTTGTGGGAGAGATGAGGTAATTGTCT-GGAATGAAGATGATTGTGGAGGACCAAGAGCCAGGCCAACATTGTTGTCATATCTCG-TACTCTGGAGCTGATGACTG-CTGGTTATTTGGTGCTGAGGCGCAAATGGAGTGCTCTCAAACTGTGAGCGG</genome_strand>
        <mrna_strand>TTTTTCCCTTGGGTCTGCA-AACTAATACATTACATTATATCTTGAAACAGAT----AGAGTGAGCATGATGGAGTTAACGATGAGAGCGTTGAAAGAGAATGTACTGTACAGGCTTCTGTACATG--AAAA-AAAAACAATCAAATTGACTAATCCCTCGGAAAATATACTGTCTAGAGTCGAAAGCTAATTACTCGGGCCTGCATGACCACGGCCTTGTGAATAGTTATTCAAATGGTCGATGGTTAAGTCTAAATGCCCTAATGTTTCCAAACCAGATTTCATTCATCATCCAGTTCCACGAGCTGTGCACGCCTCTCAGCTGCCTTCTTTCGCACAAAGAACCCCCACCTCATTGCAGCCTTAATTTTCAGCCAACCCACAACAGCTTTTCCTGGGCGTGTGCGGTCCTCATCATAACTGAAACTAGGAGATGGTGAAGGCATGAAAGATGGGAAACCATATCCATCTTCAGGCACATTTACAGAACCATGACCTCCCATGCTGAAAAGTCTCAGCAAATGTTGCATATCATCATTCTCAAGAATTTCATTGCTTCTCATTCGAATTTCCTCCTCAGACAAGAATTCGTCAACTCCCTTGTCCCTGTTGTGTGACCAATCATCAAAAGGATTAAGATTGGTTTGTGGGAGAGATGAGGTAATTGCCTGGGAATGAAGATGATTGTGGAGGACCAAGAGCCAGGCCAACATTGTTGTCATATCTCGCTACTCTGGAGCTGATGACTGCCTGGTTATTTGGTGCTGAGGCGCATATGGAGTGCTCTCAAACTGTGAGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600692" ref_strand="+" ref_description="SGN-E600692 [53710]">
      <seq>attcaacacacaggtgttcttgaaagcatatttcccttgggtctgcaaactaatacattacattatatcttgaaacagatagagtgagcatgatggattaacgatggagagcgtttgaaagaaaatgtactggtacagggcttcttggtaccttggaaaaaaaaccattcaattggacttaattccctcggaaaattatacgtggtctaaaagtcgaaaggcttatttactcggggcctgcatgaccacggccttgtgaatagttattcaaatggtcgatggttaagtctaaatgccctaatgtttccaaaccagatttcattcatcatccagttccacgagctgtgcacgcctctcagctgccttctttcgcacaaagaacccccacctcattgcagccttaattttcagccaacccacaacagcttttcctgggcgtgtgcggtcctcatcataactgaaactaggagatggtgaaggcatgaaagatgggaaaccatatccatcttcaggcacatttacagaaccatgacctcccatgctgaaaagtctcagcaaatgttgcatatcatcattctcaagaatttcattgcttctcattcgaatttcctcctcagacgagaattcgtcaactcccttgtccctgttgtgtgaccaatcatcaaaaggattaagattggtttgtgggagagatgaggtaattgcctggaatgacgatgattgtggaggaccaaggagccaggccaacattgttgtcatatctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="-" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="39490" stop="38135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39190" g_stop="38435" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="-" ref_id="SGN-E600692" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39190" e_stop="38435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAACACACAGGTGTTCTTGAAAGCATATTTCCCTTGGGTCTGCAGGACTTATACATTACATTACATCTTGAAACAGATAAAGAGAGTAAGCACGATGGAGTTAACAAT-GAGAGTG-TTAAAAGAGAATTTACT-GTACA-GGCTTC-T-GTACATGAAAAAAGAAAAACAATCGAATTGAC-TAA-TCCCTCGGAAAA-TATAC--CGTCT-AGAGTCGAAAG-C-TAATTACTC-GGGCCTGCATGACCACGGCCTTGTGAATAGTTATTCAAATGGTCGATGGTTAAGTCTAAATGCCCTAATGTTTCCACACCAGATTTTATTCATCATCCAGTTCCACGAGCTGTGCACGCCTCTCAGCTGCCTTCTTCCGCACAAAGAACCCCCACCTCATTGCAGCCTTAATTTTCAGCCAACCAACAACAGCTTTTCCTGGCCGTGTGCGGTCTTCATCATAACTGAAACTAGGAGATGGCGAAGGCATGAAAGATGGGAAACCATATCCATCTTCAGGCACATTTATAGAACCATGGCCTCCCATGCTGAAAAGTCTTAGCAAATGTTGCATATCATCATTCTCAAGAATTTCATTGCTTCTCATTCGAATTTCCTCCTCAGACAAGAATTCGTCAACTCCCTTGTCCCTGTTGTGCGACCAATCATCAAAAGGATTAAGATTGGTTTGTGGGAGAGATGAGGTAATTGTCTGGAATGAAGATGATTGTGGAGGACCAA-GAGCCAGGCCAACATTGTTGTCATATCTCG</genome_strand>
        <mrna_strand>ATTCAACACACAGGTGTTCTTGAAAGCATATTTCCCTTGGGTCTGCA-AACTAATACATTACATTATATCTTGAAACAGATA--GAGTG--AGCATGATGGA-TTAACGATGGAGAGCGTTTGAAAGAAAATGTACTGGTACAGGGCTTCTTGGTACCTTGGAAAA-AAAACCATTCAATTGGACTTAATTCCCTCGGAAAATTATACGTGGTCTAAAAGTCGAAAGGCTTATTTACTCGGGGCCTGCATGACCACGGCCTTGTGAATAGTTATTCAAATGGTCGATGGTTAAGTCTAAATGCCCTAATGTTTCCAAACCAGATTTCATTCATCATCCAGTTCCACGAGCTGTGCACGCCTCTCAGCTGCCTTCTTTCGCACAAAGAACCCCCACCTCATTGCAGCCTTAATTTTCAGCCAACCCACAACAGCTTTTCCTGGGCGTGTGCGGTCCTCATCATAACTGAAACTAGGAGATGGTGAAGGCATGAAAGATGGGAAACCATATCCATCTTCAGGCACATTTACAGAACCATGACCTCCCATGCTGAAAAGTCTCAGCAAATGTTGCATATCATCATTCTCAAGAATTTCATTGCTTCTCATTCGAATTTCCTCCTCAGACGAGAATTCGTCAACTCCCTTGTCCCTGTTGTGTGACCAATCATCAAAAGGATTAAGATTGGTTTGTGGGAGAGATGAGGTAATTGCCTGGAATGACGATGATTGTGGAGGACCAAGGAGCCAGGCCAACATTGTTGTCATATCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600924" ref_strand="+" ref_description="SGN-E600924 [53946]">
      <seq>ctttttttatcataaaattcatatagaattcaacacacaggtgttcttgaaagcatatttcccttgggtctgcaaactaatacattacattatatcttgaaacagatagagtgagcatgatggagttaacgatgagagcgttgaaagagaatgtactgtacaggcttctgtacatgaaaaaaaaacaatcaaattgactaatccctcggaaaatatactgtctagagtcgaaagctaattactcgggcctgcatgaccacggccttgtgaatagttattcaaatggtcgatggttaagtctaaatgccctaatgtttccaaaccagatttcattcatcatccagttccacgagctgtgcacgcctctcagctgccttctttcgcacaaagaacccccacctcattgcagccttaattttcagccaacccacaacagcttttcctgggcgtgtgcggtcctcatcataactgaaactaggagatggtgaaggcatgaaagatgggaaaccatatccatcttcaggcacatttacagaaccatgacctcccatgctgaaaagtctcagcaaatgttgcatatcatcattctcaagaatttcattgcttctcattcgaatttcctcctcagacaagaattcgtcaattcccttgtccctgttgtgtgaccattcatcaaaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="-" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="39515" stop="38228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39218" g_stop="38528" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="-" ref_id="SGN-E600924" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39218" e_stop="38528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTTACCATAAAAGTTCATATAGAATTCAACACACAGGTGTTCTTGAAAGCATATTTCCCTTGGGTCTGCAGGACTTATACATTACATTACATCTTGAAACAGATAAAGAGAGTAAGCACGATGGAGTTAACAATGAGAGTGTTAAAAGAGAATTTACTGTACAGGCTTCTGTACATGAAAAAAGAAAAACAATCGAATTGACTAATCCCTCGGAAAATATACCGTCTAGAGTCGAAAGCTAATTACTCGGGCCTGCATGACCACGGCCTTGTGAATAGTTATTCAAATGGTCGATGGTTAAGTCTAAATGCCCTAATGTTTCCACACCAGATTTTATTCATCATCCAGTTCCACGAGCTGTGCACGCCTCTCAGCTGCCTTCTTCCGCACAAAGAACCCCCACCTCATTGCAGCCTTAATTTTCAGCCAACCAACAACAGCTTTTCCTGGCCGTGTGCGGTCTTCATCATAACTGAAACTAGGAGATGGCGAAGGCATGAAAGATGGGAAACCATATCCATCTTCAGGCACATTTATAGAACCATGGCCTCCCATGCTGAAAAGTCTTAGCAAATGTTGCATATCATCATTCTCAAGAATTTCATTGCTTCTCATTCGAATTTCCTCCTCAGACAAGAATTCGTCAACTCCCTTGTCCCTGTTGTGCGACCAATCATCAAAAGGAT</genome_strand>
        <mrna_strand>CTTTTTTTATCATAAAA-TTCATATAGAATTCAACACACAGGTGTTCTTGAAAGCATATTTCCCTTGGGTCTGCA-AACTAATACATTACATTATATCTTGAAACAGAT----AGAGTGAGCATGATGGAGTTAACGATGAGAGCGTTGAAAGAGAATGTACTGTACAGGCTTCTGTACATG--AAAA-AAAAACAATCAAATTGACTAATCCCTCGGAAAATATACTGTCTAGAGTCGAAAGCTAATTACTCGGGCCTGCATGACCACGGCCTTGTGAATAGTTATTCAAATGGTCGATGGTTAAGTCTAAATGCCCTAATGTTTCCAAACCAGATTTCATTCATCATCCAGTTCCACGAGCTGTGCACGCCTCTCAGCTGCCTTCTTTCGCACAAAGAACCCCCACCTCATTGCAGCCTTAATTTTCAGCCAACCCACAACAGCTTTTCCTGGGCGTGTGCGGTCCTCATCATAACTGAAACTAGGAGATGGTGAAGGCATGAAAGATGGGAAACCATATCCATCTTCAGGCACATTTACAGAACCATGACCTCCCATGCTGAAAAGTCTCAGCAAATGTTGCATATCATCATTCTCAAGAATTTCATTGCTTCTCATTCGAATTTCCTCCTCAGACAAGAATTCGTCAATTCCCTTGTCCCTGTTGTGTGACCATTCATCAAAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296100" ref_strand="+" ref_description="SGN-E296100 [cLET-24-E24]">
      <seq>gaatgagaagcaatgaaattcttgagaatgatgatatgcaacatttgctaagacttttcagcatgggaggccatggttctataaatgtgcctgaagatggatatggtttcccatctttcatgccttcgccatctcctagtttcagttatgatgaagaccgcacacggccaggaaaagctgttgttggttggctgaaaattaaggctgcaatgaggtgggggttctttgtgcggaagaaggcagctgagaggcgtgcacagctcgtggaactggatgatgaataaaatctggtgtggaaacattagggcatttagacttaaccatcgaccatttgaataactattcacaaggccgtggtcatgcaggcccgagtaattagctttcgactctagacggtatattttccgagggattagtcaattcgattgtttttcttttttcatgtacagaagcctgtacagtaaattctcttttaacactctcattgttaactccatcgggcttactctctttatctgtttcaagatgtaatgtaatgtataagtcctgcagacccaagggaaatatgctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="38297" stop="39469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38597" g_stop="39169" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E296100" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38597" e_stop="39169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTAACCATCGACCATTTGAATAACTATTCACAAGGCCGTGGTCATGCAGGCCCGAGTAATTAGCTTTCGACTCTAGACGGTATATTTTCCGAGGGATTAGTCAATTCGATTGTTTTTCTTTTTTCATGTACAGAAGCCTGTACAGTAAATTCTCTTTTAACACTCTCATTGTTAACTCCATCGTGCTTACTCTCTTTATCTGTTTCAAGATGTAATGTAATGTATAAGTCCTGCAGACCCAAGGGAAATATGCTTTC</genome_strand>
        <mrna_strand>GAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTAACCATCGACCATTTGAATAACTATTCACAAGGCCGTGGTCATGCAGGCCCGAGTAATTAGCTTTCGACTCTAGACGGTATATTTTCCGAGGGATTAGTCAATTCGATTGTTTTTCTTTTTTCATGTACAGAAGCCTGTACAGTAAATTCTCTTTTAACACTCTCATTGTTAACTCCATCGGGCTTACTCTCTTTATCTGTTTCAAGATGTAATGTAATGTATAAGTCCTGCAGACCCAAGGGAAATATGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218851" ref_strand="+" ref_description="SGN-E218851 [cLEL-18-C5](-)">
      <seq>ggtgtggaaacattagggcatttagacttaaccatcgaccatttgaataactattcacaaggccgtggtcatgcaggcccgagtaattagctttcgactctagacggtatattttccgagggattagtcaattcgattgtttttcttttttcatgtacaaaagcctgtacagtaaattctcttttaacactctcattgttaactccatcgtgcttactctctttatctgtttcaagatgtaatgtaatgtataagtcctgcagacccaagggaaatatgctttcaagaacacctgtgtgttgaattctatatgaactcttatggtaaaaatgatgctgtttggctttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="38586" stop="39532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38886" g_stop="39232" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="348" polyA_stop="365"/>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E218851" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38886" e_stop="39232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTGGAAACATTAGGGCATTTAGACTTAACCATCGACCATTTGAATAACTATTCACAAGGCCGTGGTCATGCAGGCCCGAGTAATTAGCTTTCGACTCTAGACGGTATATTTTCCGAGGGATTAGTCAATTCGATTGTTTTTCTTTTTTCATGTACAGAAGCCTGTACAGTAAATTCTCTTTTAACACTCTCATTGTTAACTCCATCGTGCTTACTCTCTTTATCTGTTTCAAGATGTAATGTAATGTATAAGTCCTGCAGACCCAAGGGAAATATGCTTTCAAGAACACCTGTGTGTTGAATTCTATATGAACTTTTATGGTAAAAATGATGCTGTTTGGCTTT</genome_strand>
        <mrna_strand>GGTGTGGAAACATTAGGGCATTTAGACTTAACCATCGACCATTTGAATAACTATTCACAAGGCCGTGGTCATGCAGGCCCGAGTAATTAGCTTTCGACTCTAGACGGTATATTTTCCGAGGGATTAGTCAATTCGATTGTTTTTCTTTTTTCATGTACAAAAGCCTGTACAGTAAATTCTCTTTTAACACTCTCATTGTTAACTCCATCGTGCTTACTCTCTTTATCTGTTTCAAGATGTAATGTAATGTATAAGTCCTGCAGACCCAAGGGAAATATGCTTTCAAGAACACCTGTGTGTTGAATTCTATATGAACTCTTATGGTAAAAATGATGCTGTTTGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220989" ref_strand="+" ref_description="SGN-E220989 [cLEL-22-H22](-)">
      <seq>cgtggtcatgcaggcccgagtaattagcgttcgactctagacggtatattttccgagggattagtcaattcgattgtttttcttttttcatgtacaaaagcctgtacagttaattctcttttaacactctcattgttaactccatcgtgctaactctctttatctgtttcgggatgtaatgtaatgtataagtcctgcagacccaaggaaaatatgctttcaagaacacctgtgtgttgaattctatatgaacttttatggtaaaaatgatgctgtttggctttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="38649" stop="39535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38949" g_stop="39232" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="286" polyA_stop="303"/>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E220989" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38949" e_stop="39232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGTCATGCAGGCCCGAGTAATTAGCTTTCGACTCTAGACGGTATATTTTCCGAGGGATTAGTCAATTCGATTGTTTTTCTTTTTTCATGTACAGAAGCCTGTACAGTAAATTCTCTTTTAACACTCTCATTGTTAACTCCATCGTGCTTACTCTCTTTATCTGTTTCAAGATGTAATGTAATGTATAAGTCCTGCAGACCCAAGGGAAATATGCTTTCAAGAACACCTGTGTGTTGAATTCTATATGAACTTTTATGGTAAAAATGATGCTGTTTGGCTTT</genome_strand>
        <mrna_strand>CGTGGTCATGCAGGCCCGAGTAATTAGCGTTCGACTCTAGACGGTATATTTTCCGAGGGATTAGTCAATTCGATTGTTTTTCTTTTTTCATGTACAAAAGCCTGTACAGTTAATTCTCTTTTAACACTCTCATTGTTAACTCCATCGTGCTAACTCTCTTTATCTGTTTCGGGATGTAATGTAATGTATAAGTCCTGCAGACCCAAGGAAAATATGCTTTCAAGAACACCTGTGTGTTGAATTCTATATGAACTTTTATGGTAAAAATGATGCTGTTTGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360692" ref_strand="+" ref_description="SGN-E360692 [cLPP-7-D18]">
      <seq>taaaatggcattattttcatcaagaaattcatcaagatctaggtcctctcttccatatttggtgtttctcttaattgctgccttttttgtcttcaaggtagatatactcatatctcagtcttttagttcagcccgtcgcaacctggaaaaaactcctaatcgtatcgtagtgaacccccaaaaatcatcggaagaacgtgttgttgacagcctccctgtagttttagtaaatgctacatttgaccagaatattatgatatcatggggagatgacagaggaaaaatacttgaaaatggagagcttttaacactctccttagacaagaagtctggatcaggctttcagtctaaaaaagagtacctctttgctaaaattgatatgcaaattaagctcgtccccggaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="49262" stop="51875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49562" g_stop="49658" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49659" i_stop="50555" i_length="897">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50556" g_stop="50668" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="210" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50669" i_stop="51377" i_length="709">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51378" g_stop="51575" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="408" r_length="198" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E360692" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49562" e_stop="49658"/>
          <exon e_start="50556" e_stop="50668"/>
          <exon e_start="51378" e_stop="51575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGCATTATTTTCATCAAGAAATTCATCAAGATCTAGGTCCTCTCTTCCATATTTGGTGTTTCTCTTAATTGCTGCCTTTTTTGTCTTCAAGGTACTCTTCTATTTCTTTAATTAATTAATTAATTATTCATCATCTCAAAAATTGAATATATATTTGTTGATTAATGTTCAGTATTGAAAAAACATCAAATTTTAATGAATAAATTTTGTAAGTAGTAATTGAAAATTGACTTGTCGGAAATATTTCTGTGAGTTATAATTGATGGTGTATTTCGATAGGAACTTTTGGAATACCCCTTAAATAGTGGTTAAACATGCAATGTTTAATGTTGAAAAAATATTAAGTTCTGATAAATAACTTTTGATAGAACAAATTGAAAATTTGACTTGTCGAAAATGTTTCTGATAGCTATTTGATGGTATTTCGATAAGAACTTTTGAACCCCTTTATAAATAGTGGTTGAAGAAGTATTGGCATGAATTTAAATTTTGTTATTCAATGCTTAATACTGAAAAAGAAAACCATTAAGTTTAATTTTAACGAATAACTTTCGATAGAACTAATCGAAAATTGACTTGTCAAAAATATTTCTTTCAAGCTATTTGATGGAATTTTGCTAGAAACTTTCCACTCCCCTTATAAATAGTGGTTAAACCTACATTGACATGAATTTGGATTTTGTTATTCAATGTCCAATATTGAAAAAATCATCAAAATTCAACGGATAACTTTTGATAGAACTAAAAAAAATTGACTTGTCGAAAATATTTCTGCTAGCTATTTGACGGAATTTCGATAAGAACCTTCAGACCCCTTGAATAGTGGTTAAGCATACATTGACATGAATTTGAATTTTATCATATCATACAATGTTCAATATTGAAAAAACATCAAATTTTCAACGAATAACTTTCGATAGAATTATCCAATTAAAAAATTAACTAGTTTCGAAATATTTTTAATGATTTTTTTCGATTACATGAGCAGGTAGATATACTCATATCTCAGTCTTTTAGTTCAGCCCGTCGCAACCTGGAAAAAACTCCTAATCGTATCGTTGTGAACCCCCAAAAATCATCGGAAGAACGTGTTGTTGACAGGTACAAAAATATTTTTTTATTTTTCTTATAAAATGAATAAATAATATTTGTACAATTATAATTCATCTTATTAGGAGTAAAAAAATAAAATTTCAAGTTAGATTATATTTACGTATAAAAATAATATCATTTTTCACGACATAATATCAATAATAGTGACTAACAAATATAACATGAGAGAACTATTCACTTATGTGACATATATAATGAGCTTTGAAAGAGGGAAGTATTTGAAATATAAATTTGGCTTAAATTATTAATATCATTCTCGAATTATTAAAAAAACATCTTTTTACTTGATTAATTAAACTTAGATATACACCCGATCTTGCAGTAATATGAGTGAAATACATTATTAAATTCTCGTCAAGTTTAGAGCTGCTTTCGGTACTTTTCTCGACTTTTCATTAAGAGTCACATGCTCTTACAAGAGTTTGAAACCACTTGATATGCCATGTTGTATATCGGGAGTATATCTAAGTTTAGTTAGCCAAGTAGAACGGTATATATAAGACTGTCAATAGTTTGAAACAAAATTAATAATTTACATCAAGCTCGAAGGTGTTTTCAATACTCATCTCACTTTAAAATAAAATAAATAAGAGAATTTAATTTATATACATCCATAAAGTTCAAAATATGAATTTTCTTCCTTTTTTTTTAATGGCAAACAACTAATTTTTTTTTTTATTTTGAAAATTTGCTGCAGCCTCCCTGTAGTTTTAGTAAATGGTACATTTGACCAGCATATTATGATATCATGGGGAGATGACAGAGGAAAAATACTTGAAAATGGAGAGCTTTTAACACTCTCCTTAGACAAGAAGTCTGGATCAGGCTTTCAGTCTAAAAAAGAGTACCTCTTTGCTAAAATTGATATGCAAATTAAGCTCGTCCCTGGAAATTC</genome_strand>
        <mrna_strand>TAAAATGGCATTATTTTCATCAAGAAATTCATCAAGATCTAGGTCCTCTCTTCCATATTTGGTGTTTCTCTTAATTGCTGCCTTTTTTGTCTTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATATACTCATATCTCAGTCTTTTAGTTCAGCCCGTCGCAACCTGGAAAAAACTCCTAATCGTATCGTAGTGAACCCCCAAAAATCATCGGAAGAACGTGTTGTTGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCCTGTAGTTTTAGTAAATGCTACATTTGACCAGAATATTATGATATCATGGGGAGATGACAGAGGAAAAATACTTGAAAATGGAGAGCTTTTAACACTCTCCTTAGACAAGAAGTCTGGATCAGGCTTTCAGTCTAAAAAAGAGTACCTCTTTGCTAAAATTGATATGCAAATTAAGCTCGTCCCCGGAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393182" ref_strand="+" ref_description="SGN-E393182 [TUS-38-A19]">
      <seq>ttcagcccgtcgcaacctggaaaaaactcctaatcgtatcgttgtgaacccccaaaaatcatcggaagaacgtgttgttgacagcctccctgtagttttagtaaatggtacatttgaccagcatattatgatatcatggggagatgacagaggaaaaatacttgaaaatggagagcttttaacactctccttagacaagaagtctggatcaggctttcagtctaaaaaagagtacctctttgctaaaattgatatgcaaattaagctcgtccctggaaattctgctggcactgttactacgttttacctatcatcacaagggaacaagcatgatgaaatagattttgaattcttggggaattcaacagggaacccttatactcttcatacaaatgtttttagtttaggcaaaggcaatagggaacaacaattcttcttgtggtttgatccaactgcagattatcacacatattcaatcctatggaattctaaatgtattatattctatgttgatgatataccaattagagaatacaaaaatccagagagacttggtctttcatatttaaaataccgaccaatgagactatactcaagtctatggaacgcagatgattgggctacacaaggtggtcgtatcaaaaccaattgggaactagcaccttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="50285" stop="53899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50585" g_stop="50668" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50669" i_stop="51377" i_length="709">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51378" g_stop="51600" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="307" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51601" i_stop="52257" i_length="657">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52258" g_stop="52451" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="501" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52452" i_stop="53431" i_length="980">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53432" g_stop="53599" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="669" r_length="168" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E393182" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50585" e_stop="50668"/>
          <exon e_start="51378" e_stop="51600"/>
          <exon e_start="52258" e_stop="52451"/>
          <exon e_start="53432" e_stop="53599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCCCGTCGCAACCTGGAAAAAACTCCTAATCGTATCGTTGTGAACCCCCAAAAATCATCGGAAGAACGTGTTGTTGACAGGTACAAAAATATTTTTTTATTTTTCTTATAAAATGAATAAATAATATTTGTACAATTATAATTCATCTTATTAGGAGTAAAAAAATAAAATTTCAAGTTAGATTATATTTACGTATAAAAATAATATCATTTTTCACGACATAATATCAATAATAGTGACTAACAAATATAACATGAGAGAACTATTCACTTATGTGACATATATAATGAGCTTTGAAAGAGGGAAGTATTTGAAATATAAATTTGGCTTAAATTATTAATATCATTCTCGAATTATTAAAAAAACATCTTTTTACTTGATTAATTAAACTTAGATATACACCCGATCTTGCAGTAATATGAGTGAAATACATTATTAAATTCTCGTCAAGTTTAGAGCTGCTTTCGGTACTTTTCTCGACTTTTCATTAAGAGTCACATGCTCTTACAAGAGTTTGAAACCACTTGATATGCCATGTTGTATATCGGGAGTATATCTAAGTTTAGTTAGCCAAGTAGAACGGTATATATAAGACTGTCAATAGTTTGAAACAAAATTAATAATTTACATCAAGCTCGAAGGTGTTTTCAATACTCATCTCACTTTAAAATAAAATAAATAAGAGAATTTAATTTATATACATCCATAAAGTTCAAAATATGAATTTTCTTCCTTTTTTTTTAATGGCAAACAACTAATTTTTTTTTTTATTTTGAAAATTTGCTGCAGCCTCCCTGTAGTTTTAGTAAATGGTACATTTGACCAGCATATTATGATATCATGGGGAGATGACAGAGGAAAAATACTTGAAAATGGAGAGCTTTTAACACTCTCCTTAGACAAGAAGTCTGGATCAGGCTTTCAGTCTAAAAAAGAGTACCTCTTTGCTAAAATTGATATGCAAATTAAGCTCGTCCCTGGAAATTCTGCTGGCACTGTTACTACGTTTTACGTAAGCCTTCTTTACTAACCTTTGCATGAAAAAAAAATCGATTTTTCTTATGATATACTCTTGGTCCTTCAATTATTGATATATTATTTGACATGTGTCCTATCGGTCCATTTATATGAAAAATATGACATATTTAGAAAAAAAAATACAAATCATGTTATCATCAATTATAGAGTATTAGTATAAACTTAACATAACAGATGCTTAATAACATAGTGGAGCATTCAACAATTATGTTATACTTTTGGTCCTTCAATTATTGATGTATTATGATTTTGGTCCTTGTATTATCTGGTTAAGCATCTTTGACCTTCGATCAATGGAAATGTTTCTTATCGATCCATTTATGAGAGAATTATGATCTATTGAGAAAAATTTTCGAATAATGTTATCATCAATTATAGAGTATCAGTACAAACTTAACGTAACATATCCTTAATTATATAGTGGAGCATTTAACAATTATTGATATATATGACTTTGGTCTTTGTGTTAGCTTATTAAGTACATTTGACCTTCAATCCACGGAAATGTGTCTTATCGATCAATTTATGTGAGAAGTATGACATATTTGAATAATTTTTCGAATTATGCAATCATCAACTATATGAAGTAACAATACAAACTTAACGTCTTTTTTTTTTCTTTTGTTTGTAGCTATCATCACAAGGGAACAAGCATGATGAAATAGATTTTGAATTCTTGGGGAATTCAACAGGGAACCCTTATACTCTTCATACAAATGTTTTTAGTTTAGGCAAAGGCAATAGGGAACAACAATTCTTCTTGTGGTTTGATCCAACTGCAGATTATCACACATATTCAATCCTATGGAATTCTAAATGTATTATGTAAGTACTTTTATTATATTTGTCTCTGTTCATTTTTACTTATTTACTATACTAACTTTCTTGCTTTACGTTTCTCTTAGTATAACTCTCTTCGCCGGTCTCTACTTGTCACTAATTGTTCAACAATATTTGTTCAGTTTGGAAAATCAAAAGATAATTTATCGTTTTTTTTCTATTTTACCTTGTTGTTAAATGTTAGTCAATATCTAATACGTGTCTTAAATTTAATATATTTAAAAGATAATATAGTAATATTACTTGTGTTACTTACTGTTTCTTGAGGTGCGTGTCAAGTCAATATTAAATAATATTATTGGACAGAGGGAGTACGTTTACTTTGCTTTAGAAAATTCCATTTCAAAGTTTTTTTTTTCACTTGAAGTTTACCTAAACTAGTTAATTACATAATCCATTTTCATATCAATGAGTGAGATGACAATTTCTATGATCTCGGGATAATGCACAAATACTTCCTCAACTTTTGTTCGTAATCTCAGAGACACATTTATACTATACTAAGGTCCTGTTACCTTCTTGAACTTATTTTATTAATAATTTTCTATCCCTTTTCGGCTTACGTGGCACTATTTTGTGGGCCCAACGCTGGTTGACTTTTTTTTCCCAAGTTTGTGTCATGTAGGACGAAAAGGGGTAGAAAATTATTTATAAAATAAGTTCAGGGGAGTAATAAGACCTTAGTATAGTATAAGTGTGTCTCTGGAATTTCGGGCATAGGTTGAGGGGGTATTTGTACATTTTTTCTATAATCTTTATCGATGCTTATTTCATGAAATAGTTTTGAGGTTGAGTTATGCTCAACATCCATTATTTTTCATGATTTTATAATAAGTAGAATGCCAATTCATCTCCTTATATGATCTTCGATCCTTACCCGTTTGAGCTAGCTATTGAAATATTGATTGCAATATCAAAAGTATTACATTTTCTTATGAGATATTTCCTCATTTTTGTTAATGTAGATTCTATGTTGATGATATACCAATTAGAGAATACAAAAATCCAGAGAGACTTGGTCTTTCATATTTAAAATACCAACCAATGAGACTATACTCAAGTCTATGGAACGCAGATGATTGGGCTACACAAGGTGGTCGTATCAAAACCAATTGGGAACTAGCACCTTTTGT</genome_strand>
        <mrna_strand>TTCAGCCCGTCGCAACCTGGAAAAAACTCCTAATCGTATCGTTGTGAACCCCCAAAAATCATCGGAAGAACGTGTTGTTGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCCTGTAGTTTTAGTAAATGGTACATTTGACCAGCATATTATGATATCATGGGGAGATGACAGAGGAAAAATACTTGAAAATGGAGAGCTTTTAACACTCTCCTTAGACAAGAAGTCTGGATCAGGCTTTCAGTCTAAAAAAGAGTACCTCTTTGCTAAAATTGATATGCAAATTAAGCTCGTCCCTGGAAATTCTGCTGGCACTGTTACTACGTTTTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCATCACAAGGGAACAAGCATGATGAAATAGATTTTGAATTCTTGGGGAATTCAACAGGGAACCCTTATACTCTTCATACAAATGTTTTTAGTTTAGGCAAAGGCAATAGGGAACAACAATTCTTCTTGTGGTTTGATCCAACTGCAGATTATCACACATATTCAATCCTATGGAATTCTAAATGTATTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTATGTTGATGATATACCAATTAGAGAATACAAAAATCCAGAGAGACTTGGTCTTTCATATTTAAAATACCGACCAATGAGACTATACTCAAGTCTATGGAACGCAGATGATTGGGCTACACAAGGTGGTCGTATCAAAACCAATTGGGAACTAGCACCTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393181" ref_strand="+" ref_description="SGN-E393181 [TUS-38-A17]">
      <seq>ttcagcccgtcgcaacctggaaaaaactcctaatcgtatcgttgtgaacccccaaaaatcatcggaagaacgtgttgttgacagcctccctgtagttttagtaaatggtacatttgaccagcatattatgatatcatggggagatgacagaggaaaaatacttgaaaatggagagcttttaacactctccttagacaagaagtctggatcaggctttcagtctaaaaaagagtacctctttgctaaaattgatatgcaaattaagctcgtccctggaaattctgctggcactgttactacgttttacctatcatcacaagggaacaagcatgatgaaatagattttgaattcttggggaattcaacagggaacccttatactcttcatacaaatgtttttagtttaggcaaaggcaatagggaacaacaattcttcttgtggtttgatccaactgcagattatcacacatattcaatcctatggaattctaaatgtattatattctatgttgatgatataccaattagagaatacaaaaatccagagagacttggtctttcatatttaaaataccaaccaatgagactatactcaagtctatggaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="50285" stop="53839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50585" g_stop="50668" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50669" i_stop="51377" i_length="709">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51378" g_stop="51600" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="307" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51601" i_stop="52257" i_length="657">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52258" g_stop="52451" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="501" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52452" i_stop="53431" i_length="980">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53432" g_stop="53539" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="609" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E393181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50585" e_stop="50668"/>
          <exon e_start="51378" e_stop="51600"/>
          <exon e_start="52258" e_stop="52451"/>
          <exon e_start="53432" e_stop="53539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCCCGTCGCAACCTGGAAAAAACTCCTAATCGTATCGTTGTGAACCCCCAAAAATCATCGGAAGAACGTGTTGTTGACAGGTACAAAAATATTTTTTTATTTTTCTTATAAAATGAATAAATAATATTTGTACAATTATAATTCATCTTATTAGGAGTAAAAAAATAAAATTTCAAGTTAGATTATATTTACGTATAAAAATAATATCATTTTTCACGACATAATATCAATAATAGTGACTAACAAATATAACATGAGAGAACTATTCACTTATGTGACATATATAATGAGCTTTGAAAGAGGGAAGTATTTGAAATATAAATTTGGCTTAAATTATTAATATCATTCTCGAATTATTAAAAAAACATCTTTTTACTTGATTAATTAAACTTAGATATACACCCGATCTTGCAGTAATATGAGTGAAATACATTATTAAATTCTCGTCAAGTTTAGAGCTGCTTTCGGTACTTTTCTCGACTTTTCATTAAGAGTCACATGCTCTTACAAGAGTTTGAAACCACTTGATATGCCATGTTGTATATCGGGAGTATATCTAAGTTTAGTTAGCCAAGTAGAACGGTATATATAAGACTGTCAATAGTTTGAAACAAAATTAATAATTTACATCAAGCTCGAAGGTGTTTTCAATACTCATCTCACTTTAAAATAAAATAAATAAGAGAATTTAATTTATATACATCCATAAAGTTCAAAATATGAATTTTCTTCCTTTTTTTTTAATGGCAAACAACTAATTTTTTTTTTTATTTTGAAAATTTGCTGCAGCCTCCCTGTAGTTTTAGTAAATGGTACATTTGACCAGCATATTATGATATCATGGGGAGATGACAGAGGAAAAATACTTGAAAATGGAGAGCTTTTAACACTCTCCTTAGACAAGAAGTCTGGATCAGGCTTTCAGTCTAAAAAAGAGTACCTCTTTGCTAAAATTGATATGCAAATTAAGCTCGTCCCTGGAAATTCTGCTGGCACTGTTACTACGTTTTACGTAAGCCTTCTTTACTAACCTTTGCATGAAAAAAAAATCGATTTTTCTTATGATATACTCTTGGTCCTTCAATTATTGATATATTATTTGACATGTGTCCTATCGGTCCATTTATATGAAAAATATGACATATTTAGAAAAAAAAATACAAATCATGTTATCATCAATTATAGAGTATTAGTATAAACTTAACATAACAGATGCTTAATAACATAGTGGAGCATTCAACAATTATGTTATACTTTTGGTCCTTCAATTATTGATGTATTATGATTTTGGTCCTTGTATTATCTGGTTAAGCATCTTTGACCTTCGATCAATGGAAATGTTTCTTATCGATCCATTTATGAGAGAATTATGATCTATTGAGAAAAATTTTCGAATAATGTTATCATCAATTATAGAGTATCAGTACAAACTTAACGTAACATATCCTTAATTATATAGTGGAGCATTTAACAATTATTGATATATATGACTTTGGTCTTTGTGTTAGCTTATTAAGTACATTTGACCTTCAATCCACGGAAATGTGTCTTATCGATCAATTTATGTGAGAAGTATGACATATTTGAATAATTTTTCGAATTATGCAATCATCAACTATATGAAGTAACAATACAAACTTAACGTCTTTTTTTTTTCTTTTGTTTGTAGCTATCATCACAAGGGAACAAGCATGATGAAATAGATTTTGAATTCTTGGGGAATTCAACAGGGAACCCTTATACTCTTCATACAAATGTTTTTAGTTTAGGCAAAGGCAATAGGGAACAACAATTCTTCTTGTGGTTTGATCCAACTGCAGATTATCACACATATTCAATCCTATGGAATTCTAAATGTATTATGTAAGTACTTTTATTATATTTGTCTCTGTTCATTTTTACTTATTTACTATACTAACTTTCTTGCTTTACGTTTCTCTTAGTATAACTCTCTTCGCCGGTCTCTACTTGTCACTAATTGTTCAACAATATTTGTTCAGTTTGGAAAATCAAAAGATAATTTATCGTTTTTTTTCTATTTTACCTTGTTGTTAAATGTTAGTCAATATCTAATACGTGTCTTAAATTTAATATATTTAAAAGATAATATAGTAATATTACTTGTGTTACTTACTGTTTCTTGAGGTGCGTGTCAAGTCAATATTAAATAATATTATTGGACAGAGGGAGTACGTTTACTTTGCTTTAGAAAATTCCATTTCAAAGTTTTTTTTTTCACTTGAAGTTTACCTAAACTAGTTAATTACATAATCCATTTTCATATCAATGAGTGAGATGACAATTTCTATGATCTCGGGATAATGCACAAATACTTCCTCAACTTTTGTTCGTAATCTCAGAGACACATTTATACTATACTAAGGTCCTGTTACCTTCTTGAACTTATTTTATTAATAATTTTCTATCCCTTTTCGGCTTACGTGGCACTATTTTGTGGGCCCAACGCTGGTTGACTTTTTTTTCCCAAGTTTGTGTCATGTAGGACGAAAAGGGGTAGAAAATTATTTATAAAATAAGTTCAGGGGAGTAATAAGACCTTAGTATAGTATAAGTGTGTCTCTGGAATTTCGGGCATAGGTTGAGGGGGTATTTGTACATTTTTTCTATAATCTTTATCGATGCTTATTTCATGAAATAGTTTTGAGGTTGAGTTATGCTCAACATCCATTATTTTTCATGATTTTATAATAAGTAGAATGCCAATTCATCTCCTTATATGATCTTCGATCCTTACCCGTTTGAGCTAGCTATTGAAATATTGATTGCAATATCAAAAGTATTACATTTTCTTATGAGATATTTCCTCATTTTTGTTAATGTAGATTCTATGTTGATGATATACCAATTAGAGAATACAAAAATCCAGAGAGACTTGGTCTTTCATATTTAAAATACCAACCAATGAGACTATACTCAAGTCTATGGAACGC</genome_strand>
        <mrna_strand>TTCAGCCCGTCGCAACCTGGAAAAAACTCCTAATCGTATCGTTGTGAACCCCCAAAAATCATCGGAAGAACGTGTTGTTGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCCTGTAGTTTTAGTAAATGGTACATTTGACCAGCATATTATGATATCATGGGGAGATGACAGAGGAAAAATACTTGAAAATGGAGAGCTTTTAACACTCTCCTTAGACAAGAAGTCTGGATCAGGCTTTCAGTCTAAAAAAGAGTACCTCTTTGCTAAAATTGATATGCAAATTAAGCTCGTCCCTGGAAATTCTGCTGGCACTGTTACTACGTTTTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCATCACAAGGGAACAAGCATGATGAAATAGATTTTGAATTCTTGGGGAATTCAACAGGGAACCCTTATACTCTTCATACAAATGTTTTTAGTTTAGGCAAAGGCAATAGGGAACAACAATTCTTCTTGTGGTTTGATCCAACTGCAGATTATCACACATATTCAATCCTATGGAATTCTAAATGTATTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTATGTTGATGATATACCAATTAGAGAATACAAAAATCCAGAGAGACTTGGTCTTTCATATTTAAAATACCAACCAATGAGACTATACTCAAGTCTATGGAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202646" ref_strand="+" ref_description="SGN-E202646 [cLEC-19-B21]">
      <seq>tcatcccgtcgcaacctggaaaaaactcctggatcgtgtggttgtgaacccccaaaaatcatcggaagaacgtgttgttgacagcctccctgtagttttagtaaatggtacatttgaccagcatattatgatatcatggggagatgacagaggaaaaatacttgaaaatggagagcttttaacactctccttanacaagaagtctggatcaggctttcagtctaaaaaagagtacctctttgctaaaattgatatgcaaattaagctcgtccctggaaattctgctggcactgttactacgttttacctatcatcacaagggaacaagcatgatgaaatagattttgaattcttggggaattcaacagggaacccttatactcttcatacaaatgtttttagtttaggcaaaggcaatagggaacaacaattcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="50286" stop="52688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50586" g_stop="50668" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50669" i_stop="51377" i_length="709">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51378" g_stop="51600" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="307" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51601" i_stop="52257" i_length="657">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52258" g_stop="52388" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="438" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E202646" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50586" e_stop="50668"/>
          <exon e_start="51378" e_stop="51600"/>
          <exon e_start="52258" e_stop="52388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCCCGTCGCAACCTGGAAAAAACTCCT-AATCGTATCGTTGTGAACCCCCAAAAATCATCGGAAGAACGTGTTGTTGACAGGTACAAAAATATTTTTTTATTTTTCTTATAAAATGAATAAATAATATTTGTACAATTATAATTCATCTTATTAGGAGTAAAAAAATAAAATTTCAAGTTAGATTATATTTACGTATAAAAATAATATCATTTTTCACGACATAATATCAATAATAGTGACTAACAAATATAACATGAGAGAACTATTCACTTATGTGACATATATAATGAGCTTTGAAAGAGGGAAGTATTTGAAATATAAATTTGGCTTAAATTATTAATATCATTCTCGAATTATTAAAAAAACATCTTTTTACTTGATTAATTAAACTTAGATATACACCCGATCTTGCAGTAATATGAGTGAAATACATTATTAAATTCTCGTCAAGTTTAGAGCTGCTTTCGGTACTTTTCTCGACTTTTCATTAAGAGTCACATGCTCTTACAAGAGTTTGAAACCACTTGATATGCCATGTTGTATATCGGGAGTATATCTAAGTTTAGTTAGCCAAGTAGAACGGTATATATAAGACTGTCAATAGTTTGAAACAAAATTAATAATTTACATCAAGCTCGAAGGTGTTTTCAATACTCATCTCACTTTAAAATAAAATAAATAAGAGAATTTAATTTATATACATCCATAAAGTTCAAAATATGAATTTTCTTCCTTTTTTTTTAATGGCAAACAACTAATTTTTTTTTTTATTTTGAAAATTTGCTGCAGCCTCCCTGTAGTTTTAGTAAATGGTACATTTGACCAGCATATTATGATATCATGGGGAGATGACAGAGGAAAAATACTTGAAAATGGAGAGCTTTTAACACTCTCCTTAGACAAGAAGTCTGGATCAGGCTTTCAGTCTAAAAAAGAGTACCTCTTTGCTAAAATTGATATGCAAATTAAGCTCGTCCCTGGAAATTCTGCTGGCACTGTTACTACGTTTTACGTAAGCCTTCTTTACTAACCTTTGCATGAAAAAAAAATCGATTTTTCTTATGATATACTCTTGGTCCTTCAATTATTGATATATTATTTGACATGTGTCCTATCGGTCCATTTATATGAAAAATATGACATATTTAGAAAAAAAAATACAAATCATGTTATCATCAATTATAGAGTATTAGTATAAACTTAACATAACAGATGCTTAATAACATAGTGGAGCATTCAACAATTATGTTATACTTTTGGTCCTTCAATTATTGATGTATTATGATTTTGGTCCTTGTATTATCTGGTTAAGCATCTTTGACCTTCGATCAATGGAAATGTTTCTTATCGATCCATTTATGAGAGAATTATGATCTATTGAGAAAAATTTTCGAATAATGTTATCATCAATTATAGAGTATCAGTACAAACTTAACGTAACATATCCTTAATTATATAGTGGAGCATTTAACAATTATTGATATATATGACTTTGGTCTTTGTGTTAGCTTATTAAGTACATTTGACCTTCAATCCACGGAAATGTGTCTTATCGATCAATTTATGTGAGAAGTATGACATATTTGAATAATTTTTCGAATTATGCAATCATCAACTATATGAAGTAACAATACAAACTTAACGTCTTTTTTTTTTCTTTTGTTTGTAGCTATCATCACAAGGGAACAAGCATGATGAAATAGATTTTGAATTCTTGGGGAATTCAACAGGGAACCCTTATACTCTTCATACAAATGTTTTTAGTTTAGGCAAAGGCAATAGGGAACAACAATTCTTCTT</genome_strand>
        <mrna_strand>TCATCCCGTCGCAACCTGGAAAAAACTCCTGGATCGTGTGGTTGTGAACCCCCAAAAATCATCGGAAGAACGTGTTGTTGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCCTGTAGTTTTAGTAAATGGTACATTTGACCAGCATATTATGATATCATGGGGAGATGACAGAGGAAAAATACTTGAAAATGGAGAGCTTTTAACACTCTCCTTANACAAGAAGTCTGGATCAGGCTTTCAGTCTAAAAAAGAGTACCTCTTTGCTAAAATTGATATGCAAATTAAGCTCGTCCCTGGAAATTCTGCTGGCACTGTTACTACGTTTTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCATCACAAGGGAACAAGCATGATGAAATAGATTTTGAATTCTTGGGGAATTCAACAGGGAACCCTTATACTCTTCATACAAATGTTTTTAGTTTAGGCAAAGGCAATAGGGAACAACAATTCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398031" ref_strand="+" ref_description="SGN-E398031 [TUS-38-A19](-)">
      <seq>ttttaaatgtattatattttatgttgatgatataccaattagagaatacaaaaatccagagagacttggtctttcatatttaaaataccaaccaatgagactatactcaagtctatggaacgcagatgattgggctacacaaggtggtcgtatcaaaaccaattgggaactagcaccttttgtagcgtcctacaaaaatttcacatatgaagcttgtatttattcaagattaactagttcatcttcatgtgatatcgactctccaactcctatcaacaacgcttggttaacatatgagttagatcgaacaagtcgtgttagaatgaaagctttgcagaaaaaacatatgatttatgattattgcaacgataaatggagatttcctaaaggtcctgctcctgaatgcaagcttcttcaataacattatagttttttttgtttattatgtataatgtttaatatattttgtatttttgaattttaggtttaaattcctaggagaaaagaaaaaaaaaggaacattttagttcctttttagaaaattaaagttacttttagtttgggccattgggcctagctagaactttgagtatttttcaaaaaaaaaatagttatatttgctaaatatgatttataagttatatttattcagataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="53121" stop="54371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53432" g_stop="54070" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="654" r_length="639" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="667"/>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E398031" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53432" e_stop="54070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTATGTTGATGATATACCAATTAGAGAATACAAAAATCCAGAGAGACTTGGTCTTTCATATTTAAAATACCAACCAATGAGACTATACTCAAGTCTATGGAACGCAGATGATTGGGCTACACAAGGTGGTCGTATCAAAACCAATTGGGAACTAGCACCTTTTGTAGCGTCCTACAAAAATTTCACATATGAAGCTTGTATTTATTCAAGATTAACTAGTTCATCTTCATGTGATATCGACTCTCCAACTCCTATCAACAACGCTTGGTTAACATATGAGTTAGATCGAACAAGTCGTGTTAGAATGAAAGCTTTGCAGAAAAAACATATGATTTATGATTATTGCAACGATAAATGGAGATTTCCTAAAGGTCCTGCTCCTGAATGCAAGCTTCTTCAATAACATTATAGTTTTTTTTGTTTATTATGTATAATGTTTAATATATTTTGTATTTTTGAATTTTAGGTTTAAATTCCTAGGAGAAAAGAAAAAAAAAGGAACATTTTAGTTCCTTTTTAGAAAATTAAAGTTACTTTTAGTTTGGGCCATTGGGCCTAGCTAGAACTTTGAGTATTTTTCAAAAAAAAAATAGTTATATTTGCTAAATATGATTTATAAGTTATATTTATTCAGAT</genome_strand>
        <mrna_strand>ATTTTATGTTGATGATATACCAATTAGAGAATACAAAAATCCAGAGAGACTTGGTCTTTCATATTTAAAATACCAACCAATGAGACTATACTCAAGTCTATGGAACGCAGATGATTGGGCTACACAAGGTGGTCGTATCAAAACCAATTGGGAACTAGCACCTTTTGTAGCGTCCTACAAAAATTTCACATATGAAGCTTGTATTTATTCAAGATTAACTAGTTCATCTTCATGTGATATCGACTCTCCAACTCCTATCAACAACGCTTGGTTAACATATGAGTTAGATCGAACAAGTCGTGTTAGAATGAAAGCTTTGCAGAAAAAACATATGATTTATGATTATTGCAACGATAAATGGAGATTTCCTAAAGGTCCTGCTCCTGAATGCAAGCTTCTTCAATAACATTATAGTTTTTTTTGTTTATTATGTATAATGTTTAATATATTTTGTATTTTTGAATTTTAGGTTTAAATTCCTAGGAGAAAAGAAAAAAAAAGGAACATTTTAGTTCCTTTTTAGAAAATTAAAGTTACTTTTAGTTTGGGCCATTGGGCCTAGCTAGAACTTTGAGTATTTTTCAAAAAAAAAATAGTTATATTTGCTAAATATGATTTATAAGTTATATTTATTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393319" ref_strand="+" ref_description="SGN-E393319 [TUS-38-A17](-)">
      <seq>atgagactatactcaagtctatggaacgcagatgattgggctacacaaggtggtcgtatcaaaaccaattgggaactagcaccttttgtagcgtcctacaaaaatttcacatatgaagcttgtatttattcaagattaactagttcatcttcatgtgatatcgactctccaactcctatcaacaacgcttggttaacatatgagttagatcgaacaagtcgtgttagaatgaaagctttgcagaaaaaacatatgatttatgattattgcaacgataaatggagatttcctaaaggtcctgctcctgaatgcaagctttttcaataacattatagttttttttgtttattatgtataatgtttaatatattttgtatttttgaattttaggtttaaattcctaggagaaaagaaaaaaaaaggaacattttagttcctttttagaaaattaaagttacttttagtttgggccattgggcctagctagaactttgagtatttttcaaaaaaaaaatagttatatttgctaaatatgatttataagttatatttattcagataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="53211" stop="54371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53511" g_stop="54070" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="573"/>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E393319" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53511" e_stop="54070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGACTATACTCAAGTCTATGGAACGCAGATGATTGGGCTACACAAGGTGGTCGTATCAAAACCAATTGGGAACTAGCACCTTTTGTAGCGTCCTACAAAAATTTCACATATGAAGCTTGTATTTATTCAAGATTAACTAGTTCATCTTCATGTGATATCGACTCTCCAACTCCTATCAACAACGCTTGGTTAACATATGAGTTAGATCGAACAAGTCGTGTTAGAATGAAAGCTTTGCAGAAAAAACATATGATTTATGATTATTGCAACGATAAATGGAGATTTCCTAAAGGTCCTGCTCCTGAATGCAAGCTTCTTCAATAACATTATAGTTTTTTTTGTTTATTATGTATAATGTTTAATATATTTTGTATTTTTGAATTTTAGGTTTAAATTCCTAGGAGAAAAGAAAAAAAAAGGAACATTTTAGTTCCTTTTTAGAAAATTAAAGTTACTTTTAGTTTGGGCCATTGGGCCTAGCTAGAACTTTGAGTATTTTTCAAAAAAAAAATAGTTATATTTGCTAAATATGATTTATAAGTTATATTTATTCAGAT</genome_strand>
        <mrna_strand>ATGAGACTATACTCAAGTCTATGGAACGCAGATGATTGGGCTACACAAGGTGGTCGTATCAAAACCAATTGGGAACTAGCACCTTTTGTAGCGTCCTACAAAAATTTCACATATGAAGCTTGTATTTATTCAAGATTAACTAGTTCATCTTCATGTGATATCGACTCTCCAACTCCTATCAACAACGCTTGGTTAACATATGAGTTAGATCGAACAAGTCGTGTTAGAATGAAAGCTTTGCAGAAAAAACATATGATTTATGATTATTGCAACGATAAATGGAGATTTCCTAAAGGTCCTGCTCCTGAATGCAAGCTTTTTCAATAACATTATAGTTTTTTTTGTTTATTATGTATAATGTTTAATATATTTTGTATTTTTGAATTTTAGGTTTAAATTCCTAGGAGAAAAGAAAAAAAAAGGAACATTTTAGTTCCTTTTTAGAAAATTAAAGTTACTTTTAGTTTGGGCCATTGGGCCTAGCTAGAACTTTGAGTATTTTTCAAAAAAAAAATAGTTATATTTGCTAAATATGATTTATAAGTTATATTTATTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544982" ref_strand="+" ref_description="SGN-E544982 [TUS-67-J13]">
      <seq>gaaatacttactcttacacttgataatatttcaggttctggatttcaatcaaagaaggaatatttatttgggaaaattgatatgcaaataaaattagttcaagggaactctgctggcactgtcaccgcatactatttgtcatcacaaggatcaagtcatgatgagatagattttgagtttcttggtaatttaagtggagagccatatacactacatacaaatgtgtatacacaaggcaaaggtgatagagagcaacaatttcacttgtggtttgatcctgctaatgattttcatacttattctatcctttggaatccacaaactattgtattttcagtggacaatgtaccaataagggagtttaaaaatatggaaaacattggagttgcatttccaaaatctcaatcaatgaaactttattcaagtttatggaatgctgatgaatgggccacaagaggtgggcttatcaagactgattgggcccaagccccatttacagcctcttatagaaatttcaatgccaatatttgcaataataataataataataatgattcttgcaaatatttggtagaaaatttggatcctgtgaatgaagaaaaattgagaaaggtgcaacaaaatacatgatatataattattgtactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="59419" stop="61491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59719" g_stop="59853" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59854" i_stop="59953" i_length="100">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59954" g_stop="60147" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="329" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60148" i_stop="60871" i_length="724">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60872" g_stop="61191" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="648" r_length="319" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E544982" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59719" e_stop="59853"/>
          <exon e_start="59954" e_stop="60147"/>
          <exon e_start="60872" e_stop="61191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATACTTACTCTTACACTTGATAATATTTCAGGTTCTGGATTTCAATCAAAGAAGGAATATTTATTTGGGAAAATTGATATGCAAATAAAATTAGTTCAAGGGAACTCTGCTGGCACTGTCACCGCATACTATGTAATATTTTATTTTTACAAAAAAAAATCAAAAAAATTGGCTATTTTTGTTAATTGTTATGTTTTTTTTAATGTGGGTATTTTTTTTTTTTTTAATTTAGTTGTCATCACAAGGATCAAGTCATGATGAGATAGATTTTGAGTTTCTTGGTAATTTAAGTGGAGAGCCATATACACTACATACAAATGTGTATACACAAGGCAAAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTGCTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGTGTAAGTACTCTAAAACAATATTTTATTTTATTTTATAAAAAAATTTGATAATATTTCATTCATCTGTCCATTTTTACTCGTCTGTTTTTATTTTATAACAAGTTCATCTGTCCATTTTTACTTGTCAGTTAGATAATATTTCATTCATCTGTCCATTTTTACTAGTCTGTTATACGAAAACAGTTTGTTATTGTTTGGAATATCCTTATTAATTAGATACTATATACTTTGGTCCTTGTTATATCCTTGTCAATTAGATACTATATACTATGTATTTAATATCTAATATATTTTCTAAAATATTAAATTTAATGTATTTAAGAAAAAGGTGAGATAATGACATTGTTTAAACTACTTATCATTTTTCTTTTAATCTATCAAGTCAATAGTGATAATTATGATTTGAACAACTAAAAATTAATAGTGGATAAATATGATTGGACAGAGAACGTATCAAGTTTTTCTTTCCGAAATGTGTTTTGCTTACTATGAAAATAGTTCCTAGGTCATCTGATAAGAGTTCTCAAGTTCTGATAGTCCATGTTTCACTTGTTTCACTCTTAACGAGAGTTCTCAGGTTGATAATTGAGTTTCGTGAATTTTTAATGAAAAAGTATATTTAAAAATAGAAGTTATGATATATCAGATAATATATAGTATAAATAACTTTAGTTATCTTCTAGATGATCTGACAGTTGAAAAGTTTATTGTAATTTTTCTTCAGATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTG</genome_strand>
        <mrna_strand>GAAATACTTACTCTTACACTTGATAATATTTCAGGTTCTGGATTTCAATCAAAGAAGGAATATTTATTTGGGAAAATTGATATGCAAATAAAATTAGTTCAAGGGAACTCTGCTGGCACTGTCACCGCATACTAT....................................................................................................TTGTCATCACAAGGATCAAGTCATGATGAGATAGATTTTGAGTTTCTTGGTAATTTAAGTGGAGAGCCATATACACTACATACAAATGTGTATACACAAGGCAAAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTGCTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAAGGTGCAAC-AAAATACATGATATATAATTATTGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309003" ref_strand="+" ref_description="SGN-E309003 [cLEY-23-H4]">
      <seq>aaatacttactcttacacttgataatatttcaggttctggatttcaatcaaagaaggaatatttatttgggaaaattgatatgcaaataaaattagttcaagggaactctgctggcactgtcaccgcatactatttgtcatcacaaggatcaagtcatgatgagatagattttgagtttcttggtaatttaagtggagagccatatacactacatacaaatgtgtatacacaaggcaaaggtgatagagagcaacaatttcacttgtggtttgatcctgctaatgattttcatacttattctatcctttggaatccacaaactattgtattttcagtggacaatgtaccaataagggagtttaaaaatatggaaaacattggagttgcatttccaaaatctcaatcaatgaaactttattcaagtttatggaatgctgatgaatgggccacaagaggtgggcttatcaagactgattgggcccaagccccatttacagcctcttatagaaatttcaatgccaatatttgcaataataataataataataatgattcttgcaaatatttggtagaaaatttggatcctgtgaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="59420" stop="61438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59720" g_stop="59853" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59854" i_stop="59953" i_length="100">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59954" g_stop="60147" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="328" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60148" i_stop="60871" i_length="724">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60872" g_stop="61138" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="595" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E309003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59720" e_stop="59853"/>
          <exon e_start="59954" e_stop="60147"/>
          <exon e_start="60872" e_stop="61138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACTTACTCTTACACTTGATAATATTTCAGGTTCTGGATTTCAATCAAAGAAGGAATATTTATTTGGGAAAATTGATATGCAAATAAAATTAGTTCAAGGGAACTCTGCTGGCACTGTCACCGCATACTATGTAATATTTTATTTTTACAAAAAAAAATCAAAAAAATTGGCTATTTTTGTTAATTGTTATGTTTTTTTTAATGTGGGTATTTTTTTTTTTTTTAATTTAGTTGTCATCACAAGGATCAAGTCATGATGAGATAGATTTTGAGTTTCTTGGTAATTTAAGTGGAGAGCCATATACACTACATACAAATGTGTATACACAAGGCAAAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTGCTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGTGTAAGTACTCTAAAACAATATTTTATTTTATTTTATAAAAAAATTTGATAATATTTCATTCATCTGTCCATTTTTACTCGTCTGTTTTTATTTTATAACAAGTTCATCTGTCCATTTTTACTTGTCAGTTAGATAATATTTCATTCATCTGTCCATTTTTACTAGTCTGTTATACGAAAACAGTTTGTTATTGTTTGGAATATCCTTATTAATTAGATACTATATACTTTGGTCCTTGTTATATCCTTGTCAATTAGATACTATATACTATGTATTTAATATCTAATATATTTTCTAAAATATTAAATTTAATGTATTTAAGAAAAAGGTGAGATAATGACATTGTTTAAACTACTTATCATTTTTCTTTTAATCTATCAAGTCAATAGTGATAATTATGATTTGAACAACTAAAAATTAATAGTGGATAAATATGATTGGACAGAGAACGTATCAAGTTTTTCTTTCCGAAATGTGTTTTGCTTACTATGAAAATAGTTCCTAGGTCATCTGATAAGAGTTCTCAAGTTCTGATAGTCCATGTTTCACTTGTTTCACTCTTAACGAGAGTTCTCAGGTTGATAATTGAGTTTCGTGAATTTTTAATGAAAAAGTATATTTAAAAATAGAAGTTATGATATATCAGATAATATATAGTATAAATAACTTTAGTTATCTTCTAGATGATCTGACAGTTGAAAAGTTTATTGTAATTTTTCTTCAGATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGA</genome_strand>
        <mrna_strand>AAATACTTACTCTTACACTTGATAATATTTCAGGTTCTGGATTTCAATCAAAGAAGGAATATTTATTTGGGAAAATTGATATGCAAATAAAATTAGTTCAAGGGAACTCTGCTGGCACTGTCACCGCATACTAT....................................................................................................TTGTCATCACAAGGATCAAGTCATGATGAGATAGATTTTGAGTTTCTTGGTAATTTAAGTGGAGAGCCATATACACTACATACAAATGTGTATACACAAGGCAAAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTGCTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691892" ref_strand="+" ref_description="SGN-E691892 [LH_Ea07E18]">
      <seq>tttagttcaagggaattctgctggcactgtcaccgcatactatttgtcatcacaaggatcaagtcatgatgagatagattttgagtttcttggtaatttaagtggagagccatatacacttcatacaaatgtgtatacacaaggcaaaggtgatagagagcaacaatttcacttgtggtttgatcctactaatgattttcatacttattctatcctttggaatccacaaactattgtattttcagtggacaatgtaccaataagggagttcaaaaatatggaaaacattggagttgcatttccaaaatctcaatcaatgaaactttattcaagtttatggaatgctgatgaatgggccacaaggggtgggcttatcaagactgattgggcccaagccccatttacagcctcttatagaaatttcaatgccaatatttgcaataataataataataataattcttgcaaatatttggtagaaaatttggatcctgtgaatgaagaaaaattgagaagggtgcaacaaaaatacatgatatataattattgtactgataataagagatatcctcaaggttttcctctagagtgtagtgttacttaattaattaattaatttaatttaattaatgtaggtagaaaagttggtataataatattaatagcctcctctagttttgtctctttcaagtttattatatattgtggcccaagtaataagggaggactactattgtaatatttatatgttatgtttttaatattggaagttgaaagtgtttatgtactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="59512" stop="61725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59811" g_stop="59853" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59854" i_stop="59953" i_length="100">
            <donor d_prob="0.770" d_score="0.95"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59954" g_stop="60147" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="237" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60148" i_stop="60871" i_length="724">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60872" g_stop="61425" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="791" r_length="554" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E691892" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59811" e_stop="59853"/>
          <exon e_start="59954" e_stop="60147"/>
          <exon e_start="60872" e_stop="61425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTTCAAGGGAACTCTGCTGGCACTGTCACCGCATACTATGTAATATTTTATTTTTACAAAAAAAAATCAAAAAAATTGGCTATTTTTGTTAATTGTTATGTTTTTTTTAATGTGGGTATTTTTTTTTTTTTTAATTTAGTTGTCATCACAAGGATCAAGTCATGATGAGATAGATTTTGAGTTTCTTGGTAATTTAAGTGGAGAGCCATATACACTACATACAAATGTGTATACACAAGGCAAAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTGCTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGTGTAAGTACTCTAAAACAATATTTTATTTTATTTTATAAAAAAATTTGATAATATTTCATTCATCTGTCCATTTTTACTCGTCTGTTTTTATTTTATAACAAGTTCATCTGTCCATTTTTACTTGTCAGTTAGATAATATTTCATTCATCTGTCCATTTTTACTAGTCTGTTATACGAAAACAGTTTGTTATTGTTTGGAATATCCTTATTAATTAGATACTATATACTTTGGTCCTTGTTATATCCTTGTCAATTAGATACTATATACTATGTATTTAATATCTAATATATTTTCTAAAATATTAAATTTAATGTATTTAAGAAAAAGGTGAGATAATGACATTGTTTAAACTACTTATCATTTTTCTTTTAATCTATCAAGTCAATAGTGATAATTATGATTTGAACAACTAAAAATTAATAGTGGATAAATATGATTGGACAGAGAACGTATCAAGTTTTTCTTTCCGAAATGTGTTTTGCTTACTATGAAAATAGTTCCTAGGTCATCTGATAAGAGTTCTCAAGTTCTGATAGTCCATGTTTCACTTGTTTCACTCTTAACGAGAGTTCTCAGGTTGATAATTGAGTTTCGTGAATTTTTAATGAAAAAGTATATTTAAAAATAGAAGTTATGATATATCAGATAATATATAGTATAAATAACTTTAGTTATCTTCTAGATGATCTGACAGTTGAAAAGTTTATTGTAATTTTTCTTCAGATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATTTCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTAGTTAATTAATTAATT-A---AATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCTAAGTGATAAGGGAGGACTACTATTGTAATATTTATATGTTTATGTTTTTAATAATGGAAGTTGAAAGTGTTTATGTACTTA</genome_strand>
        <mrna_strand>TTTAGTTCAAGGGAATTCTGCTGGCACTGTCACCGCATACTAT....................................................................................................TTGTCATCACAAGGATCAAGTCATGATGAGATAGATTTTGAGTTTCTTGGTAATTTAAGTGGAGAGCCATATACACTTCATACAAATGTGTATACACAAGGCAAAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTACTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGTGGACAATGTACCAATAAGGGAGTTCAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGGGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAAT-A--ATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATATCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTACTTAATTAATTAATTAATTTAATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCCAAGTAATAAGGGAGGACTACTATTGTAATATTTATATG-TTATGTTTTTAATATTGGAAGTTGAAAGTGTTTATGTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696610" ref_strand="+" ref_description="SGN-E696610 [LH_Ea09J08](-)">
      <seq>caaggatcaagtcatgatgagatagattttgagtttcttggtaatttaagtggagagccatatacacttcatacaaatgtgtatacacaaggcaaaggtgatagagagcaacaatttcacttgtggtttgatcctactaatgattttcatacttattctatcctttggaatccacaaactattgtattttcagtggacaatgtaccaataagggagttcaaaaatatggaaaacattggagttgcatttccaaaatctcaatcaatgaaactttattcaagtttatggaatgctgatgaatgggccacaaggggtgggcttatcaagactgattgggcccaagccccatttacagcctcttatagaaatttcaatgccaatatttgcaataataataataataataattcttgcaaatatttggtagaaaatttggatcctgtgaatgaagaaaaattgagaagggtgcaacaaaaatacatgatatataattattgtactgataataagagatatcctcaaggttttcctctagagtgtagtgttacttaattaattaattaatttaatttaattaatgtaggtagaaaagttggtataataatattaatagcctcctctagttttgtctctttcaagtttattatatattgtggcccaagtaataagggaggactactattgtaatatttatatgttatgtttttaatattggaaaagggaagtgtttatgtacttatcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="59663" stop="61703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59963" g_stop="60147" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60148" i_stop="60871" i_length="724">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60872" g_stop="61428" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="742" r_length="557" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="743" polyA_stop="764"/>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E696610" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59963" e_stop="60147"/>
          <exon e_start="60872" e_stop="61428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGATCAAGTCATGATGAGATAGATTTTGAGTTTCTTGGTAATTTAAGTGGAGAGCCATATACACTACATACAAATGTGTATACACAAGGCAAAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTGCTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGTGTAAGTACTCTAAAACAATATTTTATTTTATTTTATAAAAAAATTTGATAATATTTCATTCATCTGTCCATTTTTACTCGTCTGTTTTTATTTTATAACAAGTTCATCTGTCCATTTTTACTTGTCAGTTAGATAATATTTCATTCATCTGTCCATTTTTACTAGTCTGTTATACGAAAACAGTTTGTTATTGTTTGGAATATCCTTATTAATTAGATACTATATACTTTGGTCCTTGTTATATCCTTGTCAATTAGATACTATATACTATGTATTTAATATCTAATATATTTTCTAAAATATTAAATTTAATGTATTTAAGAAAAAGGTGAGATAATGACATTGTTTAAACTACTTATCATTTTTCTTTTAATCTATCAAGTCAATAGTGATAATTATGATTTGAACAACTAAAAATTAATAGTGGATAAATATGATTGGACAGAGAACGTATCAAGTTTTTCTTTCCGAAATGTGTTTTGCTTACTATGAAAATAGTTCCTAGGTCATCTGATAAGAGTTCTCAAGTTCTGATAGTCCATGTTTCACTTGTTTCACTCTTAACGAGAGTTCTCAGGTTGATAATTGAGTTTCGTGAATTTTTAATGAAAAAGTATATTTAAAAATAGAAGTTATGATATATCAGATAATATATAGTATAAATAACTTTAGTTATCTTCTAGATGATCTGACAGTTGAAAAGTTTATTGTAATTTTTCTTCAGATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATTTCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTAGTTAATTAATTAATT-A---AATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCTAAGTGATAAGGGAGGACTACTATTGTAATATTTATATGTTTATGTTTTTAATAATGGAAGTTGAAAGTGTTTATGTACTTAAAA</genome_strand>
        <mrna_strand>CAAGGATCAAGTCATGATGAGATAGATTTTGAGTTTCTTGGTAATTTAAGTGGAGAGCCATATACACTTCATACAAATGTGTATACACAAGGCAAAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTACTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGTGGACAATGTACCAATAAGGGAGTTCAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGGGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAAT-A--ATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATATCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTACTTAATTAATTAATTAATTTAATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCCAAGTAATAAGGGAGGACTACTATTGTAATATTTATATG-TTATGTTTTTAATATTGGAAAAGGGAAGTGTTTATGTACTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544981" ref_strand="+" ref_description="SGN-E544981 [TUS-67-J13](-)">
      <seq>atacaaaatgtgtatacacaaggcaaaggtgatagagagcaacaatttcacttgtggtttgatcctgctaatgattttcatacttattctatcctttggaatccacaaactattgtattttcagtggacaatgtaccaataagggagtttaaaaatatggaaaacattggagttgcatttccaaaatctcaatcaatgaaactttattcaagtttatggaatgctgatgaatgggccacaagaggtgggcttatcaagactgattgggcccaagccccatttacagcctcttatagaaatttcaatgccaatatttgcaataataataataataataatgattcttgcaaatatttggtagaaaatttggatcctgtgaatgaagaaaaattgagaagggtgcaacaaaaatacatgatatataattattgtactgataataagagatttcctcaaggttttcctctagagtgtagtgttagttaattaattaattaaatttaattaatgtaggtagaaaagttggtataataatattaatagcctcctctagttttgtctctttcaagtttattatatattgtggcctaagtgataagggaggactactattgtaatatttatatgtttatgtttttaataatggaagttgaaagtgtttatgtacttaaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="59733" stop="61728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60033" g_stop="60147" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60148" i_stop="60871" i_length="724">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60872" g_stop="61428" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="673" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="685"/>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E544981" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60033" e_stop="60147"/>
          <exon e_start="60872" e_stop="61428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAC-AAATGTGTATACACAAGGCAAAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTGCTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGTGTAAGTACTCTAAAACAATATTTTATTTTATTTTATAAAAAAATTTGATAATATTTCATTCATCTGTCCATTTTTACTCGTCTGTTTTTATTTTATAACAAGTTCATCTGTCCATTTTTACTTGTCAGTTAGATAATATTTCATTCATCTGTCCATTTTTACTAGTCTGTTATACGAAAACAGTTTGTTATTGTTTGGAATATCCTTATTAATTAGATACTATATACTTTGGTCCTTGTTATATCCTTGTCAATTAGATACTATATACTATGTATTTAATATCTAATATATTTTCTAAAATATTAAATTTAATGTATTTAAGAAAAAGGTGAGATAATGACATTGTTTAAACTACTTATCATTTTTCTTTTAATCTATCAAGTCAATAGTGATAATTATGATTTGAACAACTAAAAATTAATAGTGGATAAATATGATTGGACAGAGAACGTATCAAGTTTTTCTTTCCGAAATGTGTTTTGCTTACTATGAAAATAGTTCCTAGGTCATCTGATAAGAGTTCTCAAGTTCTGATAGTCCATGTTTCACTTGTTTCACTCTTAACGAGAGTTCTCAGGTTGATAATTGAGTTTCGTGAATTTTTAATGAAAAAGTATATTTAAAAATAGAAGTTATGATATATCAGATAATATATAGTATAAATAACTTTAGTTATCTTCTAGATGATCTGACAGTTGAAAAGTTTATTGTAATTTTTCTTCAGATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATTTCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTAGTTAATTAATTAATTAAATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCTAAGTGATAAGGGAGGACTACTATTGTAATATTTATATGTTTATGTTTTTAATAATGGAAGTTGAAAGTGTTTATGTACTTAAAA</genome_strand>
        <mrna_strand>ATACAAAATGTGTATACACAAGGCAAAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTGCTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATTTCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTAGTTAATTAATTAATTAAATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCTAAGTGATAAGGGAGGACTACTATTGTAATATTTATATGTTTATGTTTTTAATAATGGAAGTTGAAAGTGTTTATGTACTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690882" ref_strand="+" ref_description="SGN-E690882 [LH_Ea04K16]">
      <seq>cattaggtgatagagagcaacaatttcacttgtggtttgatcctactaatgattttcatacttattctatcctttggaatccacaaactattgtattttcagtggacaatgtaccaataagggagttcaaaaatatggaaaacattggagttgcatttccaaaatctcaatcaatgaaactttattcaagtttatggaatgctgatgaatgggccacaaggggtgggcttatcaagactgattgggcccaagccccatttacagcctcttatagaaatttcaatgccaatatttgcaataataataataataataattcttgcaaatatttggtagaaaatttggatcctgtgaatgaagaaaaattgagaagggtgcaacaaaaatacatgatatataattattgtactgataataagagatatcctcaaggttttcctctagagtgtagtgttacttaattaattaattaatttaatttaattaatgtaggtagaaaagttggtataataatattaatagcctcctctagttttgtctctttcaagtttattatatattgtggcccaagtaataagggaggactactattgtaatatttatatgttatgtttttaatattggaagttgaaagtgtttatgtacttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="59758" stop="61728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60055" g_stop="60147" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60148" i_stop="60871" i_length="724">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60872" g_stop="61428" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="651" r_length="557" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E690882" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60055" e_stop="60147"/>
          <exon e_start="60872" e_stop="61428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CA-AAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTGCTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGTGTAAGTACTCTAAAACAATATTTTATTTTATTTTATAAAAAAATTTGATAATATTTCATTCATCTGTCCATTTTTACTCGTCTGTTTTTATTTTATAACAAGTTCATCTGTCCATTTTTACTTGTCAGTTAGATAATATTTCATTCATCTGTCCATTTTTACTAGTCTGTTATACGAAAACAGTTTGTTATTGTTTGGAATATCCTTATTAATTAGATACTATATACTTTGGTCCTTGTTATATCCTTGTCAATTAGATACTATATACTATGTATTTAATATCTAATATATTTTCTAAAATATTAAATTTAATGTATTTAAGAAAAAGGTGAGATAATGACATTGTTTAAACTACTTATCATTTTTCTTTTAATCTATCAAGTCAATAGTGATAATTATGATTTGAACAACTAAAAATTAATAGTGGATAAATATGATTGGACAGAGAACGTATCAAGTTTTTCTTTCCGAAATGTGTTTTGCTTACTATGAAAATAGTTCCTAGGTCATCTGATAAGAGTTCTCAAGTTCTGATAGTCCATGTTTCACTTGTTTCACTCTTAACGAGAGTTCTCAGGTTGATAATTGAGTTTCGTGAATTTTTAATGAAAAAGTATATTTAAAAATAGAAGTTATGATATATCAGATAATATATAGTATAAATAACTTTAGTTATCTTCTAGATGATCTGACAGTTGAAAAGTTTATTGTAATTTTTCTTCAGATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATTTCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTAGTTAATTAATTAATT-A---AATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCTAAGTGATAAGGGAGGACTACTATTGTAATATTTATATGTTTATGTTTTTAATAATGGAAGTTGAAAGTGTTTATGTACTTAAAA</genome_strand>
        <mrna_strand>CATTAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTACTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGTGGACAATGTACCAATAAGGGAGTTCAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGGGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAAT---TCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATATCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTACTTAATTAATTAATTAATTTAATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCCAAGTAATAAGGGAGGACTACTATTGTAATATTTATATG-TTATGTTTTTAATATTGGAAGTTGAAAGTGTTTATGTACTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690905" ref_strand="+" ref_description="SGN-E690905 [LH_Ea04L15]">
      <seq>cagtaggtgatagagagcaacaatttcacttgtggtttgatcctactaatgattttcatacttattctatcctttggaatccacaaactattgtattttcagtggacaatgtaccaataagggagttcaaaaatatggaaaacattggagttgcatttccaaaatctcaatcaatgaaactttattcaagtttatggaatgctgatgaatgggccacaaggggtgggcttatcaagactgattgggcccaagccccatttacagcctcttatagaaatttcaatgccaatatttgcaataataataataataataattcttgcaaatatttggtagaaaatttggatcctgtgaatgaagaaaaattgagaagggtgcaacaaaaatacatgatatataattattgtactgataataagagatatcctcaaggttttcctctagagtgtagtgttacttaattaattaattaatttaatttaattaatgtaggtagaaaagttggtataataatattaatagcctcctctagttttgtctctttcaagtttattatatattgtggcccaagtaataagggaggactactattgtaatatttatatgttatgtttttaatattggaagttgaaagtgtttatgtacttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="59758" stop="61728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60055" g_stop="60147" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60148" i_stop="60871" i_length="724">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60872" g_stop="61428" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="651" r_length="557" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E690905" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60055" e_stop="60147"/>
          <exon e_start="60872" e_stop="61428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CA-AAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTGCTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGTGTAAGTACTCTAAAACAATATTTTATTTTATTTTATAAAAAAATTTGATAATATTTCATTCATCTGTCCATTTTTACTCGTCTGTTTTTATTTTATAACAAGTTCATCTGTCCATTTTTACTTGTCAGTTAGATAATATTTCATTCATCTGTCCATTTTTACTAGTCTGTTATACGAAAACAGTTTGTTATTGTTTGGAATATCCTTATTAATTAGATACTATATACTTTGGTCCTTGTTATATCCTTGTCAATTAGATACTATATACTATGTATTTAATATCTAATATATTTTCTAAAATATTAAATTTAATGTATTTAAGAAAAAGGTGAGATAATGACATTGTTTAAACTACTTATCATTTTTCTTTTAATCTATCAAGTCAATAGTGATAATTATGATTTGAACAACTAAAAATTAATAGTGGATAAATATGATTGGACAGAGAACGTATCAAGTTTTTCTTTCCGAAATGTGTTTTGCTTACTATGAAAATAGTTCCTAGGTCATCTGATAAGAGTTCTCAAGTTCTGATAGTCCATGTTTCACTTGTTTCACTCTTAACGAGAGTTCTCAGGTTGATAATTGAGTTTCGTGAATTTTTAATGAAAAAGTATATTTAAAAATAGAAGTTATGATATATCAGATAATATATAGTATAAATAACTTTAGTTATCTTCTAGATGATCTGACAGTTGAAAAGTTTATTGTAATTTTTCTTCAGATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATTTCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTAGTTAATTAATTAATT-A---AATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCTAAGTGATAAGGGAGGACTACTATTGTAATATTTATATGTTTATGTTTTTAATAATGGAAGTTGAAAGTGTTTATGTACTTAAAA</genome_strand>
        <mrna_strand>CAGTAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTACTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGTGGACAATGTACCAATAAGGGAGTTCAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGGGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAAT---TCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATATCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTACTTAATTAATTAATTAATTTAATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCCAAGTAATAAGGGAGGACTACTATTGTAATATTTATATG-TTATGTTTTTAATATTGGAAGTTGAAAGTGTTTATGTACTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694722" ref_strand="+" ref_description="SGN-E694722 [LH_Ea04K16](-)">
      <seq>aggtgatagagagcaacaatttcccttgtggttggatcctactaatgattttcatacttattctatcctttggaatccacaacctattgtattttcagtgggcaatgtaccaataagggagttcaaaaatatggaaaacattggagttgcatttccaaaatctcaatcaatgaaactttattcaagtttatggaatgctgatgaatgggccacaaggggtgggcttatcaagactgattgggcccaagccccatttacagcctcttatagaaatttcaatgccaatatttgcaataataataataataataattcttgcaaatatttggtagaaaatttggatcctgtgaatgaagaaaaattgagaagggtgcaacaaaaatacatgatatataattattgtactgataataagagatatcctcaaggttttcctctagagtgtagtgttacttaattaattaattaatttaatttaattaatgtaggtagaaaagttggtataataatattaatagcctcctctagttttgtctctttcaagtttattatatattgtggcccaagtaataagggaggactactattgtaatatttatatgttatgtttaaggattggaagttgaaagtgtttatgttcttataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="59758" stop="61728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60058" g_stop="60147" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60148" i_stop="60871" i_length="724">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60872" g_stop="61428" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="646" r_length="556" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="661"/>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E694722" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60058" e_stop="60147"/>
          <exon e_start="60872" e_stop="61428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTGCTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGTGTAAGTACTCTAAAACAATATTTTATTTTATTTTATAAAAAAATTTGATAATATTTCATTCATCTGTCCATTTTTACTCGTCTGTTTTTATTTTATAACAAGTTCATCTGTCCATTTTTACTTGTCAGTTAGATAATATTTCATTCATCTGTCCATTTTTACTAGTCTGTTATACGAAAACAGTTTGTTATTGTTTGGAATATCCTTATTAATTAGATACTATATACTTTGGTCCTTGTTATATCCTTGTCAATTAGATACTATATACTATGTATTTAATATCTAATATATTTTCTAAAATATTAAATTTAATGTATTTAAGAAAAAGGTGAGATAATGACATTGTTTAAACTACTTATCATTTTTCTTTTAATCTATCAAGTCAATAGTGATAATTATGATTTGAACAACTAAAAATTAATAGTGGATAAATATGATTGGACAGAGAACGTATCAAGTTTTTCTTTCCGAAATGTGTTTTGCTTACTATGAAAATAGTTCCTAGGTCATCTGATAAGAGTTCTCAAGTTCTGATAGTCCATGTTTCACTTGTTTCACTCTTAACGAGAGTTCTCAGGTTGATAATTGAGTTTCGTGAATTTTTAATGAAAAAGTATATTTAAAAATAGAAGTTATGATATATCAGATAATATATAGTATAAATAACTTTAGTTATCTTCTAGATGATCTGACAGTTGAAAAGTTTATTGTAATTTTTCTTCAGATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATTTCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTAGTTAATTAATTAATT-A---AATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCTAAGTGATAAGGGAGGACTACTATTGTAATATTTATATGTTTATGTTTTTAATAATGGAAGTTGAAAGTGTTTATGTACTTAAAA</genome_strand>
        <mrna_strand>AGGTGATAGAGAGCAACAATTTCCCTTGTGGTTGGATCCTACTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAACCTATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGTGGGCAATGTACCAATAAGGGAGTTCAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGGGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAAT-A--ATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATATCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTACTTAATTAATTAATTAATTTAATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCCAAGTAATAAGGGAGGACTACTATTGTAATATTTATATG-TTATG-TTTAAGGATTGGAAGTTGAAAGTGTTTATGTTCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694745" ref_strand="+" ref_description="SGN-E694745 [LH_Ea04L15](-)">
      <seq>aggtgatagagagcaacaatttcacttgtggtttgatcctactaatgattttcatacttattctatcctttggaatccacaaactattgtattttcagtggacaatgtaccaataagggagttcaaaaatatggaaaacattggagttgcatttccaaaatctcaatcaatgaaactttattcaagtttatggaatgctgatgaatgggccacaaggggtgggcttatcaagactgattgggcccaagccccatttacagcctcttatagaaatttcaatgccaatatttgcaataataataataataataattcttgcaaatatttggtagaaaatttggatcctgtgaatgaagaaaaattgagaagggtgcaacaaaaatacatgatatataattattgtactgataataagagatatcctcaaggttttcctctagagtgtagtgttacttaattaattaattaatttaatttaattaatgtaggtagaaaagttggtataataatattaatagcctcctctagttttgtctctttcaagtttattatatattgtggcccaagtaataagggaggactactattgtaatatttatatgttatgtattgaatattggaagttgaaagtgtttatgtacttataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="59758" stop="61728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60058" g_stop="60147" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60148" i_stop="60871" i_length="724">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60872" g_stop="61428" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="647" r_length="557" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="662"/>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E694745" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60058" e_stop="60147"/>
          <exon e_start="60872" e_stop="61428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTGCTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGTGTAAGTACTCTAAAACAATATTTTATTTTATTTTATAAAAAAATTTGATAATATTTCATTCATCTGTCCATTTTTACTCGTCTGTTTTTATTTTATAACAAGTTCATCTGTCCATTTTTACTTGTCAGTTAGATAATATTTCATTCATCTGTCCATTTTTACTAGTCTGTTATACGAAAACAGTTTGTTATTGTTTGGAATATCCTTATTAATTAGATACTATATACTTTGGTCCTTGTTATATCCTTGTCAATTAGATACTATATACTATGTATTTAATATCTAATATATTTTCTAAAATATTAAATTTAATGTATTTAAGAAAAAGGTGAGATAATGACATTGTTTAAACTACTTATCATTTTTCTTTTAATCTATCAAGTCAATAGTGATAATTATGATTTGAACAACTAAAAATTAATAGTGGATAAATATGATTGGACAGAGAACGTATCAAGTTTTTCTTTCCGAAATGTGTTTTGCTTACTATGAAAATAGTTCCTAGGTCATCTGATAAGAGTTCTCAAGTTCTGATAGTCCATGTTTCACTTGTTTCACTCTTAACGAGAGTTCTCAGGTTGATAATTGAGTTTCGTGAATTTTTAATGAAAAAGTATATTTAAAAATAGAAGTTATGATATATCAGATAATATATAGTATAAATAACTTTAGTTATCTTCTAGATGATCTGACAGTTGAAAAGTTTATTGTAATTTTTCTTCAGATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATTTCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTAGTTAATTAATTAATT-A---AATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCTAAGTGATAAGGGAGGACTACTATTGTAATATTTATATGTTTATGTTTTTAATAATGGAAGTTGAAAGTGTTTATGTACTTAAAA</genome_strand>
        <mrna_strand>AGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTACTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGTGGACAATGTACCAATAAGGGAGTTCAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGGGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAAT---TCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATATCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTACTTAATTAATTAATTAATTTAATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCCAAGTAATAAGGGAGGACTACTATTGTAATATTTATATG-TTATGTATTGAATATTGGAAGTTGAAAGTGTTTATGTACTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353008" ref_strand="+" ref_description="SGN-E353008 [cTOS-14-I6]">
      <seq>tttcatacttattctatcctttggaatccacaaactattgtattttcagtggacaatgtaccaataagggagtttaaaaatatggaaaacattggagttgcatttccaaaatctcaatcaatgaaactttattcaagtttatggaatgctgatgaatgggccacaagaggtgggcttatcaagactgattgggcccaagccccatttacagcctcttatagaaatttcaatgccaatatttgcaataataataataataataatgattcttgcaaatatttggtagaaaatttggatcctgtgaatgaagaaaaattgagaagggtgcaacaaaaatacatgatatataattattgtactgataataagagatttcctcaaggttttcctctagagtgtagtgttagttaattaattaattaaatttaattaatgtaggtagaaaagttggtataataatattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="59807" stop="61595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60107" g_stop="60147" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60148" i_stop="60871" i_length="724">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60872" g_stop="61295" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="465" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E353008" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60107" e_stop="60147"/>
          <exon e_start="60872" e_stop="61295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGTGTAAGTACTCTAAAACAATATTTTATTTTATTTTATAAAAAAATTTGATAATATTTCATTCATCTGTCCATTTTTACTCGTCTGTTTTTATTTTATAACAAGTTCATCTGTCCATTTTTACTTGTCAGTTAGATAATATTTCATTCATCTGTCCATTTTTACTAGTCTGTTATACGAAAACAGTTTGTTATTGTTTGGAATATCCTTATTAATTAGATACTATATACTTTGGTCCTTGTTATATCCTTGTCAATTAGATACTATATACTATGTATTTAATATCTAATATATTTTCTAAAATATTAAATTTAATGTATTTAAGAAAAAGGTGAGATAATGACATTGTTTAAACTACTTATCATTTTTCTTTTAATCTATCAAGTCAATAGTGATAATTATGATTTGAACAACTAAAAATTAATAGTGGATAAATATGATTGGACAGAGAACGTATCAAGTTTTTCTTTCCGAAATGTGTTTTGCTTACTATGAAAATAGTTCCTAGGTCATCTGATAAGAGTTCTCAAGTTCTGATAGTCCATGTTTCACTTGTTTCACTCTTAACGAGAGTTCTCAGGTTGATAATTGAGTTTCGTGAATTTTTAATGAAAAAGTATATTTAAAAATAGAAGTTATGATATATCAGATAATATATAGTATAAATAACTTTAGTTATCTTCTAGATGATCTGACAGTTGAAAAGTTTATTGTAATTTTTCTTCAGATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATTTCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTAGTTAATTAATTAATTAAATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAA</genome_strand>
        <mrna_strand>TTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATTTCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTAGTTAATTAATTAATTAAATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692860" ref_strand="+" ref_description="SGN-E692860 [LH_Ea09N02]">
      <seq>cctgtgaatgctgatgaatgggccacaaggggtcgggcttatccatactgattgggcccaagccccatttacagcctcttatagaaatttcgatgccaatatttgcaataataataataataataattcttgcaaatatttggtagaaaatttggatcctgtgaatgaagaaaaattgagaagggtgcaacaaaaatacatgatatataattattgtactgataataagagatatcctcaaggttttcctctagagtgtagtgttacttaattaattaattaatttaatttaattaatgtaggtagaaaagttggtataataatattaatagcctcctctagttttgactctttcaaggttattatatattgtggcccaagtaataagggaggactactattgtaatatttatatgttatgtttttaatattggaagttgaaagtgtttatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="60672" stop="61721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60968" g_stop="61430" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E692860" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60968" e_stop="61430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGGAATGCTGATGAATGGGCCACAAGAGGT-GGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATTTCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTAGTTAATTAATTAATT-A---AATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCTAAGTGATAAGGGAGGACTACTATTGTAATATTTATATGTTTATGTTTTTAATAATGGAAGTTGAAAGTGTTTATGTACTTAAAAGT</genome_strand>
        <mrna_strand>CCTGTG-AATGCTGATGAATGGGCCACAAGGGGTCGGGCTTATCCATACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCGATGCCAATATTTGCAATAATAATAATAATAATAAT---TCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATATCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTACTTAATTAATTAATTAATTTAATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGACTCTTTCAAGGTTATTATATATTGTGGCCCAAGTAATAAGGGAGGACTACTATTGTAATATTTATATG-TTATGTTTTTAATATTGGAAGTTGAAAGTGTTTATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696700" ref_strand="+" ref_description="SGN-E696700 [LH_Ea09N02](-)">
      <seq>ggaatgctgatgaatgggccacaaggggtgggcttatcaagactgattgggcccaagccccatttacagcctcttatagaaatttcaatgccaatatttgcaataataataataataataattcttgcaaatatttggtagaaaatttggatcctgtgaatgaagaaaaattgagaagggtgcaacaaaaatacatgatatataattattgtactgataataagagatatcctcaaggttttcctctagagtgtagtgttacttaattaattaattaatttaatttaattaatgtaggtagaaaagttggtataataatattaatagcctcctctagttttgtctctttcaagtttattatatattgtggcccaagtaataagggaggactactattgtaatatttatatgttaaggggttaatattggaagttgaaagtgtttatgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="60673" stop="61721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60973" g_stop="61428" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E696700" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60973" e_stop="61428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATTTCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTAGTTAATTAATTAATT-A---AATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCTAAGTGATAAGGGAGGACTACTATTGTAATATTTATATGTTTATGTTTTTAATAATGGAAGTTGAAAGTGTTTATGTACTTAAAA</genome_strand>
        <mrna_strand>GGAATGCTGATGAATGGGCCACAAGGGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAAT-A--ATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATATCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTACTTAATTAATTAATTAATTTAATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCCAAGTAATAAGGGAGGACTACTATTGTAATATTTATATG-TTAAGGGGTTAATATTGGAAGTTGAAAGTGTTTATGTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696449" ref_strand="+" ref_description="SGN-E696449 [LH_Ea09C15](-)">
      <seq>cttaaaaaataccataaagatcatttggattttgtgagagtagagtttttgttgaggatttttgcaattattttgttgtttttgcctgcttgtcttgttggatttgattttcaaactaaagttgtttttttacctgtccccataaaagcaaacttcaaatatttggatgcattgagtgctttggtatggattgatgctgctgctgccatttacaatgtacttcaactggtgagaggtttttatattactacttcaaagggggatattaatcaaatttttcccaagaattatgggttctttttcttattagaccaggtagttgtgtccattgtatttgcagcaaattcacccccaattgaagcatcagcaattgcattaattggaattaaaagcttccaatggaggaaaatatgcaatagatttcttagattttgtatccaaattggagccgctttaatattggggtatattgctgcccttatattatttttagtttcatcaatttttgcttttcaattatttaggttatacccccctaaacatttttttaaacttaaaacaaaattaattgaggatttttatgttgttcatcaaaacgggtggcagaacgatttccaaaataattgatatcgatatagtttgcttccttagttctaagtccttttttttaaagaaataaatttatgatgaattaatttgnctatccttatacggataaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="63121" stop="66964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63420" g_stop="63595" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63596" i_stop="64402" i_length="807">
            <donor d_prob="0.384" d_score="0.90"/>
            <acceptor a_prob="0.310" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64403" g_stop="64541" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="315" r_length="139" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64542" i_stop="66267" i_length="1726">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66268" g_stop="66669" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="716" r_length="401" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="717" polyA_stop="741"/>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E696449" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63420" e_stop="63595"/>
          <exon e_start="64403" e_stop="64541"/>
          <exon e_start="66268" e_stop="66669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAAAATAACATAAAGATCATATGGATATTGTGAGAGTAGAGTTTTTGTTGAGGCTTTTGGCAATTTTGTTGTTGGTTTTGACTGCTTGTCTTGTTGGATTTGATTCTCAAACTAAAGTTGTTTTTTTAACTGTTCAAATAAAAGCAAACTTCAAATATTTGGGTGCATTGAGGTGAGTATTTTATTTGATGTGGTTTTATCTCTATTGTTTGATCTGAGGGTGGAAATCGTCTTATCGTTGGATGATATTAAGTATAAAAAATAGATTCCGAATTTATTGTATCATGGTAATATAATCTTGAACGTGTGTGATTTCAAAAAAAATTTAAATTTTGAATCTGTCTCTCGATATGTTTTCAAAAAAAATTTCATGTTTCTTTGTTCAAAGGGCTCTTTGTAACATGTCTCTTTGATATATTATAATCTCTTTTTAGTTGTCATGTCGCATTTTTTAAAAGTTAATTTGACTAATTTTTAAAGTTACATTAGATTATATTGTTTTGATATTTTAAACAAAAGATATGGTGGGTCATTTGAAGGATGAATGGCGGAGGGCAACTTTTTAGAGTGGGCGCTCTGTGCGGTACTCTTTATTTTTATGATTAAGATATTTAAAAACTATATAAAAAGTATTATAAATTGCAATTTTTGCATATGAATATGATGAAAAAATGCATCGTAAAATGTTAGTCAAAACTCTTATCGTTTGACTGTAAAAAAGAAAACCATGACCACTAAAAATAAACGTAGGAAATATGAAAGTCAATTATTTAGTCAAACCACGCGAATAATAAAAACAGTCTCTCTACCTTCAGAAGACGAAATTAAGGGTATCACATATGCATCACCCTCTTCAGATCTTATCCGCGGGATTATATATATTAGATATATTATTGTTGTTATTTATATTTATTGGCATATTATTGCATAATTTTTTTCTTAAATCTAATTGTTTGTTTTTATTAATTTGGCATATAAGTGTTTTGGTATGGATTGATGCTGCTGCTGCCATTTATAATGTACTTCAACTGCTGAGATGTTTTTTCATTGCTACTTCAAAGGTGGATATTAAACAAATTTCTCACAAGAATTATTGGTTCTTTTTCTTATTAGACCAGGTAATTAATTAATTAATTTTAATTAACTCTCTCTCTTTGATTTTTAATTGTATATTTTTTCTATGATTTTTCCTTTATCTTACTATATTTATTCCCTTTGTCCACTTTTATTTGTCATGTTATATTTTTCGAAAGTCAATTTAATTAATTTTCAATTAATTAGATATTTTAAACAAAAAATTTTGATATTCAAAAACTATATGAAAAGTCAAATTGCATTTTTTGATATGATAAAAAAAATTATATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGTCTCTAAAAATAAAAATCATGACAAATAATAGTGAACGAAGCTCACGGAGGGAGTATTATATTGTTGATCACAACATAAGGTAAGAAGTTTATATTCATACCTAGTTTCTCACGTGGTGTCTGGTATTCATTTTGTAATCCGATTTTGAATGAAGTACACTAACGTCTAGATTCACGTTGAGAAGTCAAAATTTTGAGATATATATATATATATAAAAGGCCTTCAATTAAAACGATTTCATACATAAAATAATACCTCTAGTTAAAAACGAAGGATTACTTGTCACTCCTAATACCTTCACCAAAATAATAGCTGAAAAGATGGATTATTGTTGAGATATTAATGCTATTTAATGTGGTAATTAACCTAACGTATTATTGAATTCATTGGTTTCGTTTAATTTTTGTGGGAAAATGCACAAGTACCCTCCTTAATCTATGCCCGAAATTTCAGAGACACGCTTATAATATACTAAGGTCCTATTACCTCCTTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTAGGCCTACGTGAAACTAGTTTGAAAGAAAAAATCAATCAGTGTTGTGCCCACAAGATAGTGCCACGTAAATCGAAAAGGGCTAGAATATTATTAATAAAATAAATTCAGTGGGATAATAGGACCGTTGTATAGTATAAGTGTGTCTCTGAGATTTTGGACATAGATTGAGGGGTACTTGTTTATCCCAATTTTTGTCTTGTGCTTTAATTTGTGTTTATTTATTGACTTTTTATAGATTATGATATGTTATTAATAAATGAAAATGCAAGACTTCAATTACAGTAATCTTGTGATACTTGCCTTTTCTTTCCTTTTAGGGTAGAAAATCACATCTAACTACTTTTTTTATTTGTTTCCATTGATATTCCCAAATAATAATGATATGATTATAATTTAAGTGTATGCAGACGTTATCTTATTCATATTTTGGAAATAGAGATATTCCATATAGACCCTCCTAACTAAAGAAATAAATACACAAGTCCATACAATAATATAGAGAAAGAAATAACAGAAATAAAAACGTTATAGAATAATATTTATTCCTTTTATTTCAATTTATGTGACACATTTCGAATTCTGAGGTTCAAACAAGTGTATCTTTGATCGTAAAATTTTTTATATATCTTTTAATTTTGTTTTTGGTAAGTAATCACTTTGAGACAGCTTTTTGAATCTTTTAAATATTTTGAATCATTAATTATTCTGACTTACCGTATTTTTTACGTGGTTTACAAATATAAAAATTTTATTTTTAAAAAAATCAAAGATTTCACGAATAACTTCTCAAACGACAAACTTAAACCATATGACTATCGGAAATCAAAACGCATGTATCACGTGAAACAGAAAAAGTATTATAGACAACCTTTCAAATCATCGTATGTGACAAAATTATATAATAATTATTATTTTTGCAGGTAGTTGTGTACATTGTATTTGCAGCAAATTCAGCAGCAATTGAAGCATCAGCAATTGCATTAATTGGAATTAAAAGCTTACAATGGATGAAAATATGCAATAGATTTACTAGATTTTGTATCCAAATTGGAGCTGCTTTAATATTGGGCTATATTGCTGTTCTTATATTATTTCTAGTTTCATCAATTTCTGCTTTTCAATTATTTAGGTTATATTCACCTAAACATTTTCTTAAACTTAAAACAAAATTAATTGATGATTCTTATGTTGTTCATCAAAACGTGTTGCAGAACGATCTACAAAATAATTGATATCGATGTAGTTTGCTTCCTTAGTACATAAGTACTTTGTTATGTAAAAATAAATTTATGATGAATTAATTCGACTATGCTTTTATTTTT</genome_strand>
        <mrna_strand>CTTAAAAAATACCATAAAGATCATTTGGATTTTGTGAGAGTAGAGTTTTTGTTGAGGATTTTTGCAATTATTTTGTTGTTTTTGCCTGCTTGTCTTGTTGGATTTGATTTTCAAACTAAAGTTGTTTTTTTACCTGTCCCCATAAAAGCAAACTTCAAATATTTGGATGCATTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTGGTATGGATTGATGCTGCTGCTGCCATTTACAATGTACTTCAACTGGTGAGAGGTTTTTATATTACTACTTCAAAGGGGGATATTAATCAAATTTTTCCCAAGAATTATGGGTTCTTTTTCTTATTAGACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTGTGTCCATTGTATTTGCAGCAAATTCACCCCCAATTGAAGCATCAGCAATTGCATTAATTGGAATTAAAAGCTTCCAATGGAGGAAAATATGCAATAGATTTCTTAGATTTTGTATCCAAATTGGAGCCGCTTTAATATTGGGGTATATTGCTGCCCTTATATTATTTTTAGTTTCATCAATTTTTGCTTTTCAATTATTTAGGTTATACCCCCCTAAACATTTTTTTAAACTTAAAACAAAATTAATTGAGGATTTTTATGTTGTTCATCAAAACGGGTGGCAGAACGATTTCCAAAATAATTGATATCGATATAGTTTGCTTCCTTAGTTC-TAAGTCCTTTTTTTTAAAGAAATAAATTTATGATGAATTAATTTGNCTATCCTTATACGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621578" ref_strand="+" ref_description="SGN-E621578 [75325]">
      <seq>gttggatttgattctcaaactaaagttgttttcttaactatccatataaaagccacctacaaatatttggatgccttgagtgttttggtatggattgatgctgctgctgccagttataatgtactccaactgctgagatgtttattcattactacttcaaagggggatattaaacaattttctcacaagaattattggttctttttcttattagaccaggcagttgtgtacattgtatttgcagcaaattcagcagcaattgaagcatcagtaattgcattaattggaattaaaagtttacaatggatgaaaatatgcaatagattcactagattttgtatccaagtgggagctgctttaatattgggctatcttgctgttgttatattatttctaatttcatcaatttctgcttttcaattatttaggctatactcacctaaacattttcttaaacttaaaacaaaattaattgatgatccttatattgttcatcaaaacgtgttgcagaatgatctacaaaataattgatatcgatatagtttgcttccttacttcataagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="63216" stop="66912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63516" g_stop="63595" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63596" i_stop="64402" i_length="807">
            <donor d_prob="0.384" d_score="0.82"/>
            <acceptor a_prob="0.310" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64403" g_stop="64541" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="219" r_length="139" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64542" i_stop="66267" i_length="1726">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66268" g_stop="66614" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="566" r_length="347" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E621578" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E621578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63516" e_stop="63595"/>
          <exon e_start="64403" e_stop="64541"/>
          <exon e_start="66268" e_stop="66614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGATTTGATTCTCAAACTAAAGTTGTTTTTTTAACTGTTCAAATAAAAGCAAACTTCAAATATTTGGGTGCATTGAGGTGAGTATTTTATTTGATGTGGTTTTATCTCTATTGTTTGATCTGAGGGTGGAAATCGTCTTATCGTTGGATGATATTAAGTATAAAAAATAGATTCCGAATTTATTGTATCATGGTAATATAATCTTGAACGTGTGTGATTTCAAAAAAAATTTAAATTTTGAATCTGTCTCTCGATATGTTTTCAAAAAAAATTTCATGTTTCTTTGTTCAAAGGGCTCTTTGTAACATGTCTCTTTGATATATTATAATCTCTTTTTAGTTGTCATGTCGCATTTTTTAAAAGTTAATTTGACTAATTTTTAAAGTTACATTAGATTATATTGTTTTGATATTTTAAACAAAAGATATGGTGGGTCATTTGAAGGATGAATGGCGGAGGGCAACTTTTTAGAGTGGGCGCTCTGTGCGGTACTCTTTATTTTTATGATTAAGATATTTAAAAACTATATAAAAAGTATTATAAATTGCAATTTTTGCATATGAATATGATGAAAAAATGCATCGTAAAATGTTAGTCAAAACTCTTATCGTTTGACTGTAAAAAAGAAAACCATGACCACTAAAAATAAACGTAGGAAATATGAAAGTCAATTATTTAGTCAAACCACGCGAATAATAAAAACAGTCTCTCTACCTTCAGAAGACGAAATTAAGGGTATCACATATGCATCACCCTCTTCAGATCTTATCCGCGGGATTATATATATTAGATATATTATTGTTGTTATTTATATTTATTGGCATATTATTGCATAATTTTTTTCTTAAATCTAATTGTTTGTTTTTATTAATTTGGCATATAAGTGTTTTGGTATGGATTGATGCTGCTGCTGCCATTTATAATGTACTTCAACTGCTGAGATGTTTTTTCATTGCTACTTCAAAGGTGGATATTAAACAAATTTCTCACAAGAATTATTGGTTCTTTTTCTTATTAGACCAGGTAATTAATTAATTAATTTTAATTAACTCTCTCTCTTTGATTTTTAATTGTATATTTTTTCTATGATTTTTCCTTTATCTTACTATATTTATTCCCTTTGTCCACTTTTATTTGTCATGTTATATTTTTCGAAAGTCAATTTAATTAATTTTCAATTAATTAGATATTTTAAACAAAAAATTTTGATATTCAAAAACTATATGAAAAGTCAAATTGCATTTTTTGATATGATAAAAAAAATTATATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGTCTCTAAAAATAAAAATCATGACAAATAATAGTGAACGAAGCTCACGGAGGGAGTATTATATTGTTGATCACAACATAAGGTAAGAAGTTTATATTCATACCTAGTTTCTCACGTGGTGTCTGGTATTCATTTTGTAATCCGATTTTGAATGAAGTACACTAACGTCTAGATTCACGTTGAGAAGTCAAAATTTTGAGATATATATATATATATAAAAGGCCTTCAATTAAAACGATTTCATACATAAAATAATACCTCTAGTTAAAAACGAAGGATTACTTGTCACTCCTAATACCTTCACCAAAATAATAGCTGAAAAGATGGATTATTGTTGAGATATTAATGCTATTTAATGTGGTAATTAACCTAACGTATTATTGAATTCATTGGTTTCGTTTAATTTTTGTGGGAAAATGCACAAGTACCCTCCTTAATCTATGCCCGAAATTTCAGAGACACGCTTATAATATACTAAGGTCCTATTACCTCCTTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTAGGCCTACGTGAAACTAGTTTGAAAGAAAAAATCAATCAGTGTTGTGCCCACAAGATAGTGCCACGTAAATCGAAAAGGGCTAGAATATTATTAATAAAATAAATTCAGTGGGATAATAGGACCGTTGTATAGTATAAGTGTGTCTCTGAGATTTTGGACATAGATTGAGGGGTACTTGTTTATCCCAATTTTTGTCTTGTGCTTTAATTTGTGTTTATTTATTGACTTTTTATAGATTATGATATGTTATTAATAAATGAAAATGCAAGACTTCAATTACAGTAATCTTGTGATACTTGCCTTTTCTTTCCTTTTAGGGTAGAAAATCACATCTAACTACTTTTTTTATTTGTTTCCATTGATATTCCCAAATAATAATGATATGATTATAATTTAAGTGTATGCAGACGTTATCTTATTCATATTTTGGAAATAGAGATATTCCATATAGACCCTCCTAACTAAAGAAATAAATACACAAGTCCATACAATAATATAGAGAAAGAAATAACAGAAATAAAAACGTTATAGAATAATATTTATTCCTTTTATTTCAATTTATGTGACACATTTCGAATTCTGAGGTTCAAACAAGTGTATCTTTGATCGTAAAATTTTTTATATATCTTTTAATTTTGTTTTTGGTAAGTAATCACTTTGAGACAGCTTTTTGAATCTTTTAAATATTTTGAATCATTAATTATTCTGACTTACCGTATTTTTTACGTGGTTTACAAATATAAAAATTTTATTTTTAAAAAAATCAAAGATTTCACGAATAACTTCTCAAACGACAAACTTAAACCATATGACTATCGGAAATCAAAACGCATGTATCACGTGAAACAGAAAAAGTATTATAGACAACCTTTCAAATCATCGTATGTGACAAAATTATATAATAATTATTATTTTTGCAGGTAGTTGTGTACATTGTATTTGCAGCAAATTCAGCAGCAATTGAAGCATCAGCAATTGCATTAATTGGAATTAAAAGCTTACAATGGATGAAAATATGCAATAGATTTACTAGATTTTGTATCCAAATTGGAGCTGCTTTAATATTGGGCTATATTGCTGTTCTTATATTATTTCTAGTTTCATCAATTTCTGCTTTTCAATTATTTAGGTTATATTCACCTAAACATTTTCTTAAACTTAAAACAAAATTAATTGATGATTCTTATGTTGTTCATCAAAACGTGTTGCAGAACGATCTACAAAATAATTGATATCGATGTAGTTTGCTTCCTTAGTACATAAGTAC</genome_strand>
        <mrna_strand>GTTGGATTTGATTCTCAAACTAAAGTTGTTTTCTTAACTATCCATATAAAAGCCACCTACAAATATTTGGATGCCTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTGGTATGGATTGATGCTGCTGCTGCCAGTTATAATGTACTCCAACTGCTGAGATGTTTATTCATTACTACTTCAAAGGGGGATATTAAACAATTTTCTCACAAGAATTATTGGTTCTTTTTCTTATTAGACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGTGTACATTGTATTTGCAGCAAATTCAGCAGCAATTGAAGCATCAGTAATTGCATTAATTGGAATTAAAAGTTTACAATGGATGAAAATATGCAATAGATTCACTAGATTTTGTATCCAAGTGGGAGCTGCTTTAATATTGGGCTATCTTGCTGTTGTTATATTATTTCTAATTTCATCAATTTCTGCTTTTCAATTATTTAGGCTATACTCACCTAAACATTTTCTTAAACTTAAAACAAAATTAATTGATGATCCTTATATTGTTCATCAAAACGTGTTGCAGAATGATCTACAAAATAATTGATATCGATATAGTTTGCTTCCTTACTTCATAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621236" ref_strand="+" ref_description="SGN-E621236 [71943]">
      <seq>gcaggaatcggcacgagggttggatttgattctcacactaaagtgtttcttaactatccatataaaagcactacaaatatttggatgcctgtagtgttttggtatggattgatgctgctgctgccagttataatgtactccaactgctgagatgtttattcattactacttcaaagggggatattaaacaattttctcacaagaattattggttctttttcttattagaccaggcagttgtgtacattgtatttgcagcaaattcagcagcaattgaagcatcagtaattgcattaattggaattaaaagtttacaatggatgaaaatatgcaatagattcactagattttgtatccaagtgggagctgtttaatattgggctatcttgctgttgttatattatttctaatttcatcaatttctgcttttcaattatttaggctatactcacctaaacattttcttaaactttaaaaacaaaaatttaattgatgatcctttatattgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="63216" stop="66842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63516" g_stop="63595" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="94" r_length="76" r_score="0.825"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63596" i_stop="64402" i_length="807">
            <donor d_prob="0.384" d_score="0.78"/>
            <acceptor a_prob="0.310" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64403" g_stop="64541" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="233" r_length="139" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64542" i_stop="66267" i_length="1726">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66268" g_stop="66515" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="480" r_length="247" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E621236" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E621236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63516" e_stop="63595"/>
          <exon e_start="64403" e_stop="64541"/>
          <exon e_start="66268" e_stop="66515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGATTTGATTCTCAAACTAAAGTTGTTTTTTTAACTGTTCAAATAAAAGCAAACTTCAAATATTTGGGTGCATTGAGGTGAGTATTTTATTTGATGTGGTTTTATCTCTATTGTTTGATCTGAGGGTGGAAATCGTCTTATCGTTGGATGATATTAAGTATAAAAAATAGATTCCGAATTTATTGTATCATGGTAATATAATCTTGAACGTGTGTGATTTCAAAAAAAATTTAAATTTTGAATCTGTCTCTCGATATGTTTTCAAAAAAAATTTCATGTTTCTTTGTTCAAAGGGCTCTTTGTAACATGTCTCTTTGATATATTATAATCTCTTTTTAGTTGTCATGTCGCATTTTTTAAAAGTTAATTTGACTAATTTTTAAAGTTACATTAGATTATATTGTTTTGATATTTTAAACAAAAGATATGGTGGGTCATTTGAAGGATGAATGGCGGAGGGCAACTTTTTAGAGTGGGCGCTCTGTGCGGTACTCTTTATTTTTATGATTAAGATATTTAAAAACTATATAAAAAGTATTATAAATTGCAATTTTTGCATATGAATATGATGAAAAAATGCATCGTAAAATGTTAGTCAAAACTCTTATCGTTTGACTGTAAAAAAGAAAACCATGACCACTAAAAATAAACGTAGGAAATATGAAAGTCAATTATTTAGTCAAACCACGCGAATAATAAAAACAGTCTCTCTACCTTCAGAAGACGAAATTAAGGGTATCACATATGCATCACCCTCTTCAGATCTTATCCGCGGGATTATATATATTAGATATATTATTGTTGTTATTTATATTTATTGGCATATTATTGCATAATTTTTTTCTTAAATCTAATTGTTTGTTTTTATTAATTTGGCATATAAGTGTTTTGGTATGGATTGATGCTGCTGCTGCCATTTATAATGTACTTCAACTGCTGAGATGTTTTTTCATTGCTACTTCAAAGGTGGATATTAAACAAATTTCTCACAAGAATTATTGGTTCTTTTTCTTATTAGACCAGGTAATTAATTAATTAATTTTAATTAACTCTCTCTCTTTGATTTTTAATTGTATATTTTTTCTATGATTTTTCCTTTATCTTACTATATTTATTCCCTTTGTCCACTTTTATTTGTCATGTTATATTTTTCGAAAGTCAATTTAATTAATTTTCAATTAATTAGATATTTTAAACAAAAAATTTTGATATTCAAAAACTATATGAAAAGTCAAATTGCATTTTTTGATATGATAAAAAAAATTATATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGTCTCTAAAAATAAAAATCATGACAAATAATAGTGAACGAAGCTCACGGAGGGAGTATTATATTGTTGATCACAACATAAGGTAAGAAGTTTATATTCATACCTAGTTTCTCACGTGGTGTCTGGTATTCATTTTGTAATCCGATTTTGAATGAAGTACACTAACGTCTAGATTCACGTTGAGAAGTCAAAATTTTGAGATATATATATATATATAAAAGGCCTTCAATTAAAACGATTTCATACATAAAATAATACCTCTAGTTAAAAACGAAGGATTACTTGTCACTCCTAATACCTTCACCAAAATAATAGCTGAAAAGATGGATTATTGTTGAGATATTAATGCTATTTAATGTGGTAATTAACCTAACGTATTATTGAATTCATTGGTTTCGTTTAATTTTTGTGGGAAAATGCACAAGTACCCTCCTTAATCTATGCCCGAAATTTCAGAGACACGCTTATAATATACTAAGGTCCTATTACCTCCTTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTAGGCCTACGTGAAACTAGTTTGAAAGAAAAAATCAATCAGTGTTGTGCCCACAAGATAGTGCCACGTAAATCGAAAAGGGCTAGAATATTATTAATAAAATAAATTCAGTGGGATAATAGGACCGTTGTATAGTATAAGTGTGTCTCTGAGATTTTGGACATAGATTGAGGGGTACTTGTTTATCCCAATTTTTGTCTTGTGCTTTAATTTGTGTTTATTTATTGACTTTTTATAGATTATGATATGTTATTAATAAATGAAAATGCAAGACTTCAATTACAGTAATCTTGTGATACTTGCCTTTTCTTTCCTTTTAGGGTAGAAAATCACATCTAACTACTTTTTTTATTTGTTTCCATTGATATTCCCAAATAATAATGATATGATTATAATTTAAGTGTATGCAGACGTTATCTTATTCATATTTTGGAAATAGAGATATTCCATATAGACCCTCCTAACTAAAGAAATAAATACACAAGTCCATACAATAATATAGAGAAAGAAATAACAGAAATAAAAACGTTATAGAATAATATTTATTCCTTTTATTTCAATTTATGTGACACATTTCGAATTCTGAGGTTCAAACAAGTGTATCTTTGATCGTAAAATTTTTTATATATCTTTTAATTTTGTTTTTGGTAAGTAATCACTTTGAGACAGCTTTTTGAATCTTTTAAATATTTTGAATCATTAATTATTCTGACTTACCGTATTTTTTACGTGGTTTACAAATATAAAAATTTTATTTTTAAAAAAATCAAAGATTTCACGAATAACTTCTCAAACGACAAACTTAAACCATATGACTATCGGAAATCAAAACGCATGTATCACGTGAAACAGAAAAAGTATTATAGACAACCTTTCAAATCATCGTATGTGACAAAATTATATAATAATTATTATTTTTGCAGGTAGTTGTGTACATTGTATTTGCAGCAAATTCAGCAGCAATTGAAGCATCAGCAATTGCATTAATTGGAATTAAAAGCTTACAATGGATGAAAATATGCAATAGATTTACTAGATTTTGTATCCAAATTGGAGCTGCTTTAATATTGGGCTATATTGCTGTTCTTATATTATTTCTAGTTTCATCAATTTCTGCTTTTCAATTATTTAGGTTATATTCACCTAAACATTTTCTTAAACTTAAAACAAA</genome_strand>
        <mrna_strand>GTTGGATTTGATTCTCACACTAAAG-TG-TTTCTTAACTATCCATATAAAAGC--ACTACAAATATTTGGATGCCTGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTGGTATGGATTGATGCTGCTGCTGCCAGTTATAATGTACTCCAACTGCTGAGATGTTTATTCATTACTACTTCAAAGGGGGATATTAAACAATTTTCTCACAAGAATTATTGGTTCTTTTTCTTATTAGACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGTGTACATTGTATTTGCAGCAAATTCAGCAGCAATTGAAGCATCAGTAATTGCATTAATTGGAATTAAAAGTTTACAATGGATGAAAATATGCAATAGATTCACTAGATTTTGTATCCAAGTGGGAGCTG-TTTAATATTGGGCTATCTTGCTGTTGTTATATTATTTCTAATTTCATCAATTTCTGCTTTTCAATTATTTAGGCTATACTCACCTAAACATTTTCTTAAACTTTAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695491" ref_strand="+" ref_description="SGN-E695491 [LH_Ea06K17](-)">
      <seq>aagttgtttttttaactgtccacataaaagcaaacttcaaatatttggatgcattgagtgctttggtatggattgatgctgctgctgccatttacaatgtacttcaactgctgagatgtttttatattactacttcaaaggtggatattaatcaaatttctcacaagaattattggttctttttcttattagaccaggtagttgtgtacattgtatttgcagcaaattcagcagcaattgaagcatcagcaattgcattaattggaattaaaagcttacaatggatgaaaatatgcaatagatttactagattttgtatccaaattggagctgctttaatattgggctatattgctgtccttatattatttctagtttcatcaatttctgcttttcaattatttaggttatactcacctaaacattttcttaaacttaaaacaaaattaattgatgattcttatgttgttcatcaaaacgtgttgcagaacgatctacaaaataattgatatcgatatagttggcttccttagtactaagtactttgttatgtaaaaataaagggatgatgaattaatttgactatgctttactcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="63238" stop="66933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63538" g_stop="63595" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63596" i_stop="64402" i_length="807">
            <donor d_prob="0.384" d_score="0.94"/>
            <acceptor a_prob="0.310" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64403" g_stop="64541" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="197" r_length="139" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64542" i_stop="66267" i_length="1726">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66268" g_stop="66669" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="597" r_length="400" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="598" polyA_stop="610"/>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E695491" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63538" e_stop="63595"/>
          <exon e_start="64403" e_stop="64541"/>
          <exon e_start="66268" e_stop="66669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGTTTTTTTAACTGTTCAAATAAAAGCAAACTTCAAATATTTGGGTGCATTGAGGTGAGTATTTTATTTGATGTGGTTTTATCTCTATTGTTTGATCTGAGGGTGGAAATCGTCTTATCGTTGGATGATATTAAGTATAAAAAATAGATTCCGAATTTATTGTATCATGGTAATATAATCTTGAACGTGTGTGATTTCAAAAAAAATTTAAATTTTGAATCTGTCTCTCGATATGTTTTCAAAAAAAATTTCATGTTTCTTTGTTCAAAGGGCTCTTTGTAACATGTCTCTTTGATATATTATAATCTCTTTTTAGTTGTCATGTCGCATTTTTTAAAAGTTAATTTGACTAATTTTTAAAGTTACATTAGATTATATTGTTTTGATATTTTAAACAAAAGATATGGTGGGTCATTTGAAGGATGAATGGCGGAGGGCAACTTTTTAGAGTGGGCGCTCTGTGCGGTACTCTTTATTTTTATGATTAAGATATTTAAAAACTATATAAAAAGTATTATAAATTGCAATTTTTGCATATGAATATGATGAAAAAATGCATCGTAAAATGTTAGTCAAAACTCTTATCGTTTGACTGTAAAAAAGAAAACCATGACCACTAAAAATAAACGTAGGAAATATGAAAGTCAATTATTTAGTCAAACCACGCGAATAATAAAAACAGTCTCTCTACCTTCAGAAGACGAAATTAAGGGTATCACATATGCATCACCCTCTTCAGATCTTATCCGCGGGATTATATATATTAGATATATTATTGTTGTTATTTATATTTATTGGCATATTATTGCATAATTTTTTTCTTAAATCTAATTGTTTGTTTTTATTAATTTGGCATATAAGTGTTTTGGTATGGATTGATGCTGCTGCTGCCATTTATAATGTACTTCAACTGCTGAGATGTTTTTTCATTGCTACTTCAAAGGTGGATATTAAACAAATTTCTCACAAGAATTATTGGTTCTTTTTCTTATTAGACCAGGTAATTAATTAATTAATTTTAATTAACTCTCTCTCTTTGATTTTTAATTGTATATTTTTTCTATGATTTTTCCTTTATCTTACTATATTTATTCCCTTTGTCCACTTTTATTTGTCATGTTATATTTTTCGAAAGTCAATTTAATTAATTTTCAATTAATTAGATATTTTAAACAAAAAATTTTGATATTCAAAAACTATATGAAAAGTCAAATTGCATTTTTTGATATGATAAAAAAAATTATATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGTCTCTAAAAATAAAAATCATGACAAATAATAGTGAACGAAGCTCACGGAGGGAGTATTATATTGTTGATCACAACATAAGGTAAGAAGTTTATATTCATACCTAGTTTCTCACGTGGTGTCTGGTATTCATTTTGTAATCCGATTTTGAATGAAGTACACTAACGTCTAGATTCACGTTGAGAAGTCAAAATTTTGAGATATATATATATATATAAAAGGCCTTCAATTAAAACGATTTCATACATAAAATAATACCTCTAGTTAAAAACGAAGGATTACTTGTCACTCCTAATACCTTCACCAAAATAATAGCTGAAAAGATGGATTATTGTTGAGATATTAATGCTATTTAATGTGGTAATTAACCTAACGTATTATTGAATTCATTGGTTTCGTTTAATTTTTGTGGGAAAATGCACAAGTACCCTCCTTAATCTATGCCCGAAATTTCAGAGACACGCTTATAATATACTAAGGTCCTATTACCTCCTTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTAGGCCTACGTGAAACTAGTTTGAAAGAAAAAATCAATCAGTGTTGTGCCCACAAGATAGTGCCACGTAAATCGAAAAGGGCTAGAATATTATTAATAAAATAAATTCAGTGGGATAATAGGACCGTTGTATAGTATAAGTGTGTCTCTGAGATTTTGGACATAGATTGAGGGGTACTTGTTTATCCCAATTTTTGTCTTGTGCTTTAATTTGTGTTTATTTATTGACTTTTTATAGATTATGATATGTTATTAATAAATGAAAATGCAAGACTTCAATTACAGTAATCTTGTGATACTTGCCTTTTCTTTCCTTTTAGGGTAGAAAATCACATCTAACTACTTTTTTTATTTGTTTCCATTGATATTCCCAAATAATAATGATATGATTATAATTTAAGTGTATGCAGACGTTATCTTATTCATATTTTGGAAATAGAGATATTCCATATAGACCCTCCTAACTAAAGAAATAAATACACAAGTCCATACAATAATATAGAGAAAGAAATAACAGAAATAAAAACGTTATAGAATAATATTTATTCCTTTTATTTCAATTTATGTGACACATTTCGAATTCTGAGGTTCAAACAAGTGTATCTTTGATCGTAAAATTTTTTATATATCTTTTAATTTTGTTTTTGGTAAGTAATCACTTTGAGACAGCTTTTTGAATCTTTTAAATATTTTGAATCATTAATTATTCTGACTTACCGTATTTTTTACGTGGTTTACAAATATAAAAATTTTATTTTTAAAAAAATCAAAGATTTCACGAATAACTTCTCAAACGACAAACTTAAACCATATGACTATCGGAAATCAAAACGCATGTATCACGTGAAACAGAAAAAGTATTATAGACAACCTTTCAAATCATCGTATGTGACAAAATTATATAATAATTATTATTTTTGCAGGTAGTTGTGTACATTGTATTTGCAGCAAATTCAGCAGCAATTGAAGCATCAGCAATTGCATTAATTGGAATTAAAAGCTTACAATGGATGAAAATATGCAATAGATTTACTAGATTTTGTATCCAAATTGGAGCTGCTTTAATATTGGGCTATATTGCTGTTCTTATATTATTTCTAGTTTCATCAATTTCTGCTTTTCAATTATTTAGGTTATATTCACCTAAACATTTTCTTAAACTTAAAACAAAATTAATTGATGATTCTTATGTTGTTCATCAAAACGTGTTGCAGAACGATCTACAAAATAATTGATATCGATGTAGTTTGCTTCCTTAGTACATAAGTACTTTGTTATGTAAAAATAAATTTATGATGAATTAATTCGACTATGCTTTTATTTTT</genome_strand>
        <mrna_strand>AAGTTGTTTTTTTAACTGTCCACATAAAAGCAAACTTCAAATATTTGGATGCATTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTGGTATGGATTGATGCTGCTGCTGCCATTTACAATGTACTTCAACTGCTGAGATGTTTTTATATTACTACTTCAAAGGTGGATATTAATCAAATTTCTCACAAGAATTATTGGTTCTTTTTCTTATTAGACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTGTGTACATTGTATTTGCAGCAAATTCAGCAGCAATTGAAGCATCAGCAATTGCATTAATTGGAATTAAAAGCTTACAATGGATGAAAATATGCAATAGATTTACTAGATTTTGTATCCAAATTGGAGCTGCTTTAATATTGGGCTATATTGCTGTCCTTATATTATTTCTAGTTTCATCAATTTCTGCTTTTCAATTATTTAGGTTATACTCACCTAAACATTTTCTTAAACTTAAAACAAAATTAATTGATGATTCTTATGTTGTTCATCAAAACGTGTTGCAGAACGATCTACAAAATAATTGATATCGATATAGTTGGCTTCCTTAGTAC-TAAGTACTTTGTTATGTAAAAATAAAGGGATGATGAATTAATTTGACTATGC-TTTACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694098" ref_strand="+" ref_description="SGN-E694098 [LH_Ea03A16](-)">
      <seq>tttttatattactacttcaaaggtggatattaatcaaatttctcacaagaattattggttctttttcttattagaccaggtagttgtgtacattgtatttgcagcaaattcagcagcaattgaagcatcagcaattgcattaattggaattaaaagcttacaatggatgaaaatatgcaatagatttactagattttgtatccaaattggagctgctttaatattgggctatattgctgtccttatattatttctagtttcatcaatttctgcttttcaattatttaggttatactcacctaaacattttcttaaacttaaaacaaaaggaattgatgattcttatgttgttcatcaaaacgtcgttacaggggcgatctacaaaataattgatatcgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-OmqOc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="64163" stop="66885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64463" g_stop="64541" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64542" i_stop="66267" i_length="1726">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66268" g_stop="66584" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="398" r_length="319" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="399" polyA_stop="417"/>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-E694098" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64463" e_stop="64541"/>
          <exon e_start="66268" e_stop="66584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCATTGCTACTTCAAAGGTGGATATTAAACAAATTTCTCACAAGAATTATTGGTTCTTTTTCTTATTAGACCAGGTAATTAATTAATTAATTTTAATTAACTCTCTCTCTTTGATTTTTAATTGTATATTTTTTCTATGATTTTTCCTTTATCTTACTATATTTATTCCCTTTGTCCACTTTTATTTGTCATGTTATATTTTTCGAAAGTCAATTTAATTAATTTTCAATTAATTAGATATTTTAAACAAAAAATTTTGATATTCAAAAACTATATGAAAAGTCAAATTGCATTTTTTGATATGATAAAAAAAATTATATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGTCTCTAAAAATAAAAATCATGACAAATAATAGTGAACGAAGCTCACGGAGGGAGTATTATATTGTTGATCACAACATAAGGTAAGAAGTTTATATTCATACCTAGTTTCTCACGTGGTGTCTGGTATTCATTTTGTAATCCGATTTTGAATGAAGTACACTAACGTCTAGATTCACGTTGAGAAGTCAAAATTTTGAGATATATATATATATATAAAAGGCCTTCAATTAAAACGATTTCATACATAAAATAATACCTCTAGTTAAAAACGAAGGATTACTTGTCACTCCTAATACCTTCACCAAAATAATAGCTGAAAAGATGGATTATTGTTGAGATATTAATGCTATTTAATGTGGTAATTAACCTAACGTATTATTGAATTCATTGGTTTCGTTTAATTTTTGTGGGAAAATGCACAAGTACCCTCCTTAATCTATGCCCGAAATTTCAGAGACACGCTTATAATATACTAAGGTCCTATTACCTCCTTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTAGGCCTACGTGAAACTAGTTTGAAAGAAAAAATCAATCAGTGTTGTGCCCACAAGATAGTGCCACGTAAATCGAAAAGGGCTAGAATATTATTAATAAAATAAATTCAGTGGGATAATAGGACCGTTGTATAGTATAAGTGTGTCTCTGAGATTTTGGACATAGATTGAGGGGTACTTGTTTATCCCAATTTTTGTCTTGTGCTTTAATTTGTGTTTATTTATTGACTTTTTATAGATTATGATATGTTATTAATAAATGAAAATGCAAGACTTCAATTACAGTAATCTTGTGATACTTGCCTTTTCTTTCCTTTTAGGGTAGAAAATCACATCTAACTACTTTTTTTATTTGTTTCCATTGATATTCCCAAATAATAATGATATGATTATAATTTAAGTGTATGCAGACGTTATCTTATTCATATTTTGGAAATAGAGATATTCCATATAGACCCTCCTAACTAAAGAAATAAATACACAAGTCCATACAATAATATAGAGAAAGAAATAACAGAAATAAAAACGTTATAGAATAATATTTATTCCTTTTATTTCAATTTATGTGACACATTTCGAATTCTGAGGTTCAAACAAGTGTATCTTTGATCGTAAAATTTTTTATATATCTTTTAATTTTGTTTTTGGTAAGTAATCACTTTGAGACAGCTTTTTGAATCTTTTAAATATTTTGAATCATTAATTATTCTGACTTACCGTATTTTTTACGTGGTTTACAAATATAAAAATTTTATTTTTAAAAAAATCAAAGATTTCACGAATAACTTCTCAAACGACAAACTTAAACCATATGACTATCGGAAATCAAAACGCATGTATCACGTGAAACAGAAAAAGTATTATAGACAACCTTTCAAATCATCGTATGTGACAAAATTATATAATAATTATTATTTTTGCAGGTAGTTGTGTACATTGTATTTGCAGCAAATTCAGCAGCAATTGAAGCATCAGCAATTGCATTAATTGGAATTAAAAGCTTACAATGGATGAAAATATGCAATAGATTTACTAGATTTTGTATCCAAATTGGAGCTGCTTTAATATTGGGCTATATTGCTGTTCTTATATTATTTCTAGTTTCATCAATTTCTGCTTTTCAATTATTTAGGTTATATTCACCTAAACATTTTCTTAAACTTAAAACAAAATTAATTGATGATTCTTATGTTGTTCATCAAAACGT-GTTGCA-GAACGATCTACAAAATAATTGATATCG</genome_strand>
        <mrna_strand>TTTTTATATTACTACTTCAAAGGTGGATATTAATCAAATTTCTCACAAGAATTATTGGTTCTTTTTCTTATTAGACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTGTGTACATTGTATTTGCAGCAAATTCAGCAGCAATTGAAGCATCAGCAATTGCATTAATTGGAATTAAAAGCTTACAATGGATGAAAATATGCAATAGATTTACTAGATTTTGTATCCAAATTGGAGCTGCTTTAATATTGGGCTATATTGCTGTCCTTATATTATTTCTAGTTTCATCAATTTCTGCTTTTCAATTATTTAGGTTATACTCACCTAAACATTTTCTTAAACTTAAAACAAAAGGAATTGATGATTCTTATGTTGTTCATCAAAACGTCGTTACAGGGGCGATCTACAAAATAATTGATATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>69</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="27775" PGL_stop="30142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27775" e_stop="28716"/>
            <exon e_start="29510" e_stop="30142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="27775" e_stop="28716" e_length="942"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28717" i_stop="29509" i_length="793"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29510" e_stop="30142" e_length="633"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27775" stop="28633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27787" stop="28542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27787" stop="28376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27787" stop="28339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27787" stop="28304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27787" stop="28078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28439" stop="28716"/>
              <exon start="29510" stop="29635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28654" stop="28716"/>
              <exon start="29510" stop="29899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28655" stop="28716"/>
              <exon start="29510" stop="30010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28663" stop="28716"/>
              <exon start="29510" stop="29755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29569" stop="30142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252066" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGAGGCACGAGCAGAAAGCACTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTATTGATATCTTGGATCAGTCCCAGATCTTCTCAAAGAAAATCCAAAAAAGTGGAACCAAGAATCTGATGGTCGACGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGCTTCAACCGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATACCAGTGACTTCGGATGCTGAAATTGGAACTTTACCACCCCCCATAAAATTTAATAAAATTAAGTTTTCAAATAAGATGAGAGCCGAGGATGATTCCAATGAAGCTTACAAGCCTTCCATTCTGGTAAGGCCACCAATGGAGACTGCAGAGTCACATCGCAGCAAGAAAATTGTAATTAAGCAACTCAAGGACTCAACAAGTGTGGATGAAGGCTTCCTGGATGGAAGCAGTGGCATGGAGTACAGGAAGACAAAGAAAATCAATGAATTGTCGTACATGGGGCAGCAAGAGAGGGAATACTTATATGAAGAGACTTTAGGAAGGAAAAAAATGGATGATAAACGATTATGGGAAGAAGAGGAGAGGAGGAGAATTGCTGTCAGACAGAGAGAAGAAAGAGCCAAGATATATGAGCGACAGAAGGCATTAGAAGAACAAGAGAAATTAGCGGCGATTGAAAGCTATCAAGACGCCATAAGAAGAGAAAGGGAGGAAGAAGAACGTCTTAAAGAAAAAAAGAAGAAAAAGAAGAAGACTGAAATAAGAGATGATTACTTGGATGATTTTCTTCCCAGAAGAAACGACAGAAGGATACCAGATCGAGACAGATCGGTGAAGCGGAGACAAACTTTCGAGTCTGGAAGGCATGCTAAAGAGCATGCACCACCAACAAAGCGCCGAAGAGGGGGAGAG : GTTGGTTTGTCAAATATTTTAGAAGAAATTGTTGATACACTGAAGAACAATGTGAACGTATCATACCTCTTCTTGAAGCCAGTGACCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAACGCCCTATGGACCTATCTACCATCAAAGAGAAAGCCAGGAAACTGGAATATAAAAACCGTGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGATGGGCGCAACCCAGGTATTCCTCCCCTTGCGGATCAGCTTCTAGAGATTTGTGACTACTTGCTGGAAGAGAATGAGTCCATCTTAGCTGAAGCTGAATCTGGTATTGAGTGATGATACTTCATATTTGAACCTTGTTTCTGTTCGATTTTAAGTTCAATTAAGCAAGCTTTCATTGGTTACTCACAATCTAGTGTCTATTGTTCAGCGATCTAAAGGATAGATCTTCTAGATGTGTCAGTTGCAGCCACCCCAACATATGTATCAGATAAACAAGACGCGACTGAAGGGATTATTGTATCCTAACTGTATAATGAGATTTAGTAGCTGATGATTCTGTGTACCGACCATGTTGTTTTAATCCATGGTCAAGGAAGGCAACGCGCTGATGGGTGT</gDNA_template>
            <first_frame> V  E  A  R  A  E  S  T  D  L  E  K  T  T  G  K  S  M  G  S  I  D  I  L  D  Q  S  Q  I  F  S  K  K  I  Q  K  S  G  T  K  N  L  M  V  D  V  H  E  D  D  N  S  S  S  K  A  K  V  L  K  V  K  C  A  S  T  D  K  L  P  D  K  P  T  P  A  T  S  L  N  S  D  I  P  V  T  S  D  A  E  I  G  T  L  P  P  P  I  K  F  N  K  I  K  F  S  N  K  M  R  A  E  D  D  S  N  E  A  Y  K  P  S  I  L  V  R  P  P  M  E  T  A  E  S  H  R  S  K  K  I  V  I  K  Q  L  K  D  S  T  S  V  D  E  G  F  L  D  G  S  S  G  M  E  Y  R  K  T  K  K  I  N  E  L  S  Y  M  G  Q  Q  E  R  E  Y  L  Y  E  E  T  L  G  R  K  K  M  D  D  K  R  L  W  E  E  E  E  R  R  R  I  A  V  R  Q  R  E  E  R  A  K  I  Y  E  R  Q  K  A  L  E  E  Q  E  K  L  A  A  I  E  S  Y  Q  D  A  I  R  R  E  R  E  E  E  E  R  L  K  E  K  K  K  K  K  K  K  T  E  I  R  D  D  Y  L  D  D  F  L  P  R  R  N  D  R  R  I  P  D  R  D  R  S  V  K  R  R  Q  T  F  E  S  G  R  H  A  K  E  H  A  P  P  T  K  R  R  R  G  G  E  :  V  G  L  S  N  I  L  E  E  I  V  D  T  L  K  N  N  V  N  V  S  Y  L  F  L  K  P  V  T  R  K  E  A  P  D  Y  H  K  Y  V  K  R  P  M  D  L  S  T  I  K  E  K  A  R  K  L  E  Y  K  N  R  G  Q  F  R  H  D  V  A  Q  I  T  I  N  A  H  L  Y  N  D  G  R  N  P  G  I  P  P  L  A  D  Q  L  L  E  I  C  D  Y  L  L  E  E  N  E  S  I  L  A  E  A  E  S  G  I  E  *  *  Y  F  I  F  E  P  C  F  C  S  I  L  S  S  I  K  Q  A  F  I  G  Y  S  Q  S  S  V  Y  C  S  A  I  *  R  I  D  L  L  D  V  S  V  A  A  T  P  T  Y  V  S  D  K  Q  D  A  T  E  G  I  I  V  S  *  L  Y  N  E  I  *  *  L  M  I  L  C  T  D  H  V  V  L  I  H  G  Q  G  R  Q  R  A  D  G  C </first_frame>
            <second_frame>  W  R  H  E  Q  K  A  L  I  W  K  R  L  Q  E  N  L  W  V  L  L  I  S  W  I  S  P  R  S  S  Q  R  K  S  K  K  V  E  P  R  I  *  W  S  T  F  M  R  M  I  I  P  V  Q  R  P  K  F  *  R  S  N  V  L  Q  P  T  N  F  L  I  N  L  L  L  R  P  H  L  I  L  T  Y  Q  *  L  R  M  L  K  L  E  L  Y  H  P  P  *  N  L  I  K  L  S  F  Q  I  R  *  E  P  R  M  I  P  M  K  L  T  S  L  P  F  W  *  G  H  Q  W  R  L  Q  S  H  I  A  A  R  K  L  *  L  S  N  S  R  T  Q  Q  V  W  M  K  A  S  W  M  E  A  V  A  W  S  T  G  R  Q  R  K  S  M  N  C  R  T  W  G  S  K  R  G  N  T  Y  M  K  R  L  *  E  G  K  K  W  M  I  N  D  Y  G  K  K  R  R  G  G  E  L  L  S  D  R  E  K  K  E  P  R  Y  M  S  D  R  R  H  *  K  N  K  R  N  *  R  R  L  K  A  I  K  T  P  *  E  E  K  G  R  K  K  N  V  L  K  K  K  R  R  K  R  R  R  L  K  *  E  M  I  T  W  M  I  F  F  P  E  E  T  T  E  G  Y  Q  I  E  T  D  R  *  S  G  D  K  L  S  S  L  E  G  M  L  K  S  M  H  H  Q  Q  S  A  E  E  G  E  R :   L  V  C  Q  I  F  *  K  K  L  L  I  H  *  R  T  M  *  T  Y  H  T  S  S  *  S  Q  *  P  E  R  K  L  Q  I  I  T  S  M  *  N  A  L  W  T  Y  L  P  S  K  R  K  P  G  N  W  N  I  K  T  V  G  N  S  G  M  M  W  H  R  S  L  S  M  H  I  C  T  M  M  G  A  T  Q  V  F  L  P  L  R  I  S  F  *  R  F  V  T  T  C  W  K  R  M  S  P  S  *  L  K  L  N  L  V  L  S  D  D  T  S  Y  L  N  L  V  S  V  R  F  *  V  Q  L  S  K  L  S  L  V  T  H  N  L  V  S  I  V  Q  R  S  K  G  *  I  F  *  M  C  Q  L  Q  P  P  Q  H  M  Y  Q  I  N  K  T  R  L  K  G  L  L  Y  P  N  C  I  M  R  F  S  S  *  *  F  C  V  P  T  M  L  F  *  S  M  V  K  E  G  N  A  L  M  G   </second_frame>
            <third_frame>   G  G  T  S  R  K  H  *  S  G  K  D  Y  R  K  I  Y  G  F  Y  *  Y  L  G  S  V  P  D  L  L  K  E  N  P  K  K  W  N  Q  E  S  D  G  R  R  S  *  G  *  *  F  Q  F  K  G  Q  S  S  E  G  Q  M  C  F  N  R  Q  T  S  *  *  T  Y  S  C  D  L  T  *  F  *  H  T  S  D  F  G  C  *  N  W  N  F  T  T  P  H  K  I  *  *  N  *  V  F  K  *  D  E  S  R  G  *  F  Q  *  S  L  Q  A  F  H  S  G  K  A  T  N  G  D  C  R  V  T  S  Q  Q  E  N  C  N  *  A  T  Q  G  L  N  K  C  G  *  R  L  P  G  W  K  Q  W  H  G  V  Q  E  D  K  E  N  Q  *  I  V  V  H  G  A  A  R  E  G  I  L  I  *  R  D  F  R  K  E  K  N  G  *  *  T  I  M  G  R  R  G  E  E  E  N  C  C  Q  T  E  R  R  K  S  Q  D  I  *  A  T  E  G  I  R  R  T  R  E  I  S  G  D  *  K  L  S  R  R  H  K  K  R  K  G  G  R  R  T  S  *  R  K  K  E  E  K  E  E  D  *  N  K  R  *  L  L  G  *  F  S  S  Q  K  K  R  Q  K  D  T  R  S  R  Q  I  G  E  A  E  T  N  F  R  V  W  K  A  C  *  R  A  C  T  T  N  K  A  P  K  R  G  R   : G  W  F  V  K  Y  F  R  R  N  C  *  Y  T  E  E  Q  C  E  R  I  I  P  L  L  E  A  S  D  P  K  G  S  S  R  L  S  Q  V  C  K  T  P  Y  G  P  I  Y  H  Q  R  E  S  Q  E  T  G  I  *  K  P  W  A  I  Q  A  *  C  G  T  D  H  Y  Q  C  T  F  V  Q  *  W  A  Q  P  R  Y  S  S  P  C  G  S  A  S  R  D  L  *  L  L  A  G  R  E  *  V  H  L  S  *  S  *  I  W  Y  *  V  M  I  L  H  I  *  T  L  F  L  F  D  F  K  F  N  *  A  S  F  H  W  L  L  T  I  *  C  L  L  F  S  D  L  K  D  R  S  S  R  C  V  S  C  S  H  P  N  I  C  I  R  *  T  R  R  D  *  R  D  Y  C  I  L  T  V  *  *  D  L  V  A  D  D  S  V  Y  R  P  C  C  F  N  P  W  S  R  K  A  T  R  *  W  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27775" stop="28716"/>
                    <exon start="29510" stop="29860"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1290</number_coding_nucleotides>
                  <number_encoded_amino_acids>430</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEARAESTDLEKTTGKSMGSIDILDQSQIFSKKIQKSGTKNLMVDVHEDDNSSSKAKVLKVKCASTDKLPDKPTPATSLNSDIPVTSDAEIGTLPPPIKFNKIKFSNKMRAEDDSNEAYKPSILVRPPMETAESHRSKKIVIKQLKDSTSVDEGFLDGSSGMEYRKTKKINELSYMGQQEREYLYEETLGRKKMDDKRLWEEEERRRIAVRQREERAKIYERQKALEEQEKLAAIESYQDAIRREREEEERLKEKKKKKKKTEIRDDYLDDFLPRRNDRRIPDRDRSVKRRQTFESGRHAKEHAPPTKRRRGGEVGLSNILEEIVDTLKNNVNVSYLFLKPVTRKEAPDYHKYVKRPMDLSTIKEKARKLEYKNRGQFRHDVAQITINAHLYNDGRNPGIPPLADQLLEICDYLLEENESILAEAESGIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27775" e_stop="28716"/>
            <exon e_start="29510" e_stop="29849"/>
            <exon e_start="29955" e_stop="30108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="0.988"/>
          <exon-intron don_prob="0.984" acc_prob="0.861" e_score="0.991"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="27775" e_stop="28716" e_length="942"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28717" i_stop="29509" i_length="793"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="29510" e_stop="29849" e_length="340"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.861">
            <gDNA_intron_boundary i_start="29850" i_stop="29954" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.929">
            <gDNA_exon_boundary e_start="29955" e_stop="30108" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27775" stop="28633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27787" stop="28542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27787" stop="28376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27787" stop="28339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27787" stop="28304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27787" stop="28078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28439" stop="28716"/>
              <exon start="29510" stop="29635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28502" stop="28716"/>
              <exon start="29510" stop="29849"/>
              <exon start="29955" stop="30108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28538" stop="28716"/>
              <exon start="29510" stop="29849"/>
              <exon start="29955" stop="29984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28663" stop="28716"/>
              <exon start="29510" stop="29755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378477" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGAGGCACGAGCAGAAAGCACTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTATTGATATCTTGGATCAGTCCCAGATCTTCTCAAAGAAAATCCAAAAAAGTGGAACCAAGAATCTGATGGTCGACGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGCTTCAACCGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATACCAGTGACTTCGGATGCTGAAATTGGAACTTTACCACCCCCCATAAAATTTAATAAAATTAAGTTTTCAAATAAGATGAGAGCCGAGGATGATTCCAATGAAGCTTACAAGCCTTCCATTCTGGTAAGGCCACCAATGGAGACTGCAGAGTCACATCGCAGCAAGAAAATTGTAATTAAGCAACTCAAGGACTCAACAAGTGTGGATGAAGGCTTCCTGGATGGAAGCAGTGGCATGGAGTACAGGAAGACAAAGAAAATCAATGAATTGTCGTACATGGGGCAGCAAGAGAGGGAATACTTATATGAAGAGACTTTAGGAAGGAAAAAAATGGATGATAAACGATTATGGGAAGAAGAGGAGAGGAGGAGAATTGCTGTCAGACAGAGAGAAGAAAGAGCCAAGATATATGAGCGACAGAAGGCATTAGAAGAACAAGAGAAATTAGCGGCGATTGAAAGCTATCAAGACGCCATAAGAAGAGAAAGGGAGGAAGAAGAACGTCTTAAAGAAAAAAAGAAGAAAAAGAAGAAGACTGAAATAAGAGATGATTACTTGGATGATTTTCTTCCCAGAAGAAACGACAGAAGGATACCAGATCGAGACAGATCGGTGAAGCGGAGACAAACTTTCGAGTCTGGAAGGCATGCTAAAGAGCATGCACCACCAACAAAGCGCCGAAGAGGGGGAGAG : GTTGGTTTGTCAAATATTTTAGAAGAAATTGTTGATACACTGAAGAACAATGTGAACGTATCATACCTCTTCTTGAAGCCAGTGACCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAACGCCCTATGGACCTATCTACCATCAAAGAGAAAGCCAGGAAACTGGAATATAAAAACCGTGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGATGGGCGCAACCCAGGTATTCCTCCCCTTGCGGATCAGCTTCTAGAGATTTGTGACTACTTGCTGGAAGAGAATGAGTCCATCTTAGCTGAAGCTGAATCTG : CGATCTAAAGGATAGATCTTCTAGATGTGTCAGTTGCAGCCACCCCAACATATGTATCAGATAAACAAGACGCGACTGAAGGGATTATTGTATCCTAACTGTATAATGAGATTTAGTAGCTGATGATTCTGTGTACCGACCATGTTGTTTTAAT</gDNA_template>
            <first_frame> V  E  A  R  A  E  S  T  D  L  E  K  T  T  G  K  S  M  G  S  I  D  I  L  D  Q  S  Q  I  F  S  K  K  I  Q  K  S  G  T  K  N  L  M  V  D  V  H  E  D  D  N  S  S  S  K  A  K  V  L  K  V  K  C  A  S  T  D  K  L  P  D  K  P  T  P  A  T  S  L  N  S  D  I  P  V  T  S  D  A  E  I  G  T  L  P  P  P  I  K  F  N  K  I  K  F  S  N  K  M  R  A  E  D  D  S  N  E  A  Y  K  P  S  I  L  V  R  P  P  M  E  T  A  E  S  H  R  S  K  K  I  V  I  K  Q  L  K  D  S  T  S  V  D  E  G  F  L  D  G  S  S  G  M  E  Y  R  K  T  K  K  I  N  E  L  S  Y  M  G  Q  Q  E  R  E  Y  L  Y  E  E  T  L  G  R  K  K  M  D  D  K  R  L  W  E  E  E  E  R  R  R  I  A  V  R  Q  R  E  E  R  A  K  I  Y  E  R  Q  K  A  L  E  E  Q  E  K  L  A  A  I  E  S  Y  Q  D  A  I  R  R  E  R  E  E  E  E  R  L  K  E  K  K  K  K  K  K  K  T  E  I  R  D  D  Y  L  D  D  F  L  P  R  R  N  D  R  R  I  P  D  R  D  R  S  V  K  R  R  Q  T  F  E  S  G  R  H  A  K  E  H  A  P  P  T  K  R  R  R  G  G  E  :  V  G  L  S  N  I  L  E  E  I  V  D  T  L  K  N  N  V  N  V  S  Y  L  F  L  K  P  V  T  R  K  E  A  P  D  Y  H  K  Y  V  K  R  P  M  D  L  S  T  I  K  E  K  A  R  K  L  E  Y  K  N  R  G  Q  F  R  H  D  V  A  Q  I  T  I  N  A  H  L  Y  N  D  G  R  N  P  G  I  P  P  L  A  D  Q  L  L  E  I  C  D  Y  L  L  E  E  N  E  S  I  L  A  E  A  E  S   : A  I  *  R  I  D  L  L  D  V  S  V  A  A  T  P  T  Y  V  S  D  K  Q  D  A  T  E  G  I  I  V  S  *  L  Y  N  E  I  *  *  L  M  I  L  C  T  D  H  V  V  L   </first_frame>
            <second_frame>  W  R  H  E  Q  K  A  L  I  W  K  R  L  Q  E  N  L  W  V  L  L  I  S  W  I  S  P  R  S  S  Q  R  K  S  K  K  V  E  P  R  I  *  W  S  T  F  M  R  M  I  I  P  V  Q  R  P  K  F  *  R  S  N  V  L  Q  P  T  N  F  L  I  N  L  L  L  R  P  H  L  I  L  T  Y  Q  *  L  R  M  L  K  L  E  L  Y  H  P  P  *  N  L  I  K  L  S  F  Q  I  R  *  E  P  R  M  I  P  M  K  L  T  S  L  P  F  W  *  G  H  Q  W  R  L  Q  S  H  I  A  A  R  K  L  *  L  S  N  S  R  T  Q  Q  V  W  M  K  A  S  W  M  E  A  V  A  W  S  T  G  R  Q  R  K  S  M  N  C  R  T  W  G  S  K  R  G  N  T  Y  M  K  R  L  *  E  G  K  K  W  M  I  N  D  Y  G  K  K  R  R  G  G  E  L  L  S  D  R  E  K  K  E  P  R  Y  M  S  D  R  R  H  *  K  N  K  R  N  *  R  R  L  K  A  I  K  T  P  *  E  E  K  G  R  K  K  N  V  L  K  K  K  R  R  K  R  R  R  L  K  *  E  M  I  T  W  M  I  F  F  P  E  E  T  T  E  G  Y  Q  I  E  T  D  R  *  S  G  D  K  L  S  S  L  E  G  M  L  K  S  M  H  H  Q  Q  S  A  E  E  G  E  R :   L  V  C  Q  I  F  *  K  K  L  L  I  H  *  R  T  M  *  T  Y  H  T  S  S  *  S  Q  *  P  E  R  K  L  Q  I  I  T  S  M  *  N  A  L  W  T  Y  L  P  S  K  R  K  P  G  N  W  N  I  K  T  V  G  N  S  G  M  M  W  H  R  S  L  S  M  H  I  C  T  M  M  G  A  T  Q  V  F  L  P  L  R  I  S  F  *  R  F  V  T  T  C  W  K  R  M  S  P  S  *  L  K  L  N  L  :  R  S  K  G  *  I  F  *  M  C  Q  L  Q  P  P  Q  H  M  Y  Q  I  N  K  T  R  L  K  G  L  L  Y  P  N  C  I  M  R  F  S  S  *  *  F  C  V  P  T  M  L  F  *  </second_frame>
            <third_frame>   G  G  T  S  R  K  H  *  S  G  K  D  Y  R  K  I  Y  G  F  Y  *  Y  L  G  S  V  P  D  L  L  K  E  N  P  K  K  W  N  Q  E  S  D  G  R  R  S  *  G  *  *  F  Q  F  K  G  Q  S  S  E  G  Q  M  C  F  N  R  Q  T  S  *  *  T  Y  S  C  D  L  T  *  F  *  H  T  S  D  F  G  C  *  N  W  N  F  T  T  P  H  K  I  *  *  N  *  V  F  K  *  D  E  S  R  G  *  F  Q  *  S  L  Q  A  F  H  S  G  K  A  T  N  G  D  C  R  V  T  S  Q  Q  E  N  C  N  *  A  T  Q  G  L  N  K  C  G  *  R  L  P  G  W  K  Q  W  H  G  V  Q  E  D  K  E  N  Q  *  I  V  V  H  G  A  A  R  E  G  I  L  I  *  R  D  F  R  K  E  K  N  G  *  *  T  I  M  G  R  R  G  E  E  E  N  C  C  Q  T  E  R  R  K  S  Q  D  I  *  A  T  E  G  I  R  R  T  R  E  I  S  G  D  *  K  L  S  R  R  H  K  K  R  K  G  G  R  R  T  S  *  R  K  K  E  E  K  E  E  D  *  N  K  R  *  L  L  G  *  F  S  S  Q  K  K  R  Q  K  D  T  R  S  R  Q  I  G  E  A  E  T  N  F  R  V  W  K  A  C  *  R  A  C  T  T  N  K  A  P  K  R  G  R   : G  W  F  V  K  Y  F  R  R  N  C  *  Y  T  E  E  Q  C  E  R  I  I  P  L  L  E  A  S  D  P  K  G  S  S  R  L  S  Q  V  C  K  T  P  Y  G  P  I  Y  H  Q  R  E  S  Q  E  T  G  I  *  K  P  W  A  I  Q  A  *  C  G  T  D  H  Y  Q  C  T  F  V  Q  *  W  A  Q  P  R  Y  S  S  P  C  G  S  A  S  R  D  L  *  L  L  A  G  R  E  *  V  H  L  S  *  S  *  I  C :   D  L  K  D  R  S  S  R  C  V  S  C  S  H  P  N  I  C  I  R  *  T  R  R  D  *  R  D  Y  C  I  L  T  V  *  *  D  L  V  A  D  D  S  V  Y  R  P  C  C  F  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27775" stop="28716"/>
                    <exon start="29510" stop="29849"/>
                    <exon start="29955" stop="29962"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1287</number_coding_nucleotides>
                  <number_encoded_amino_acids>429</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEARAESTDLEKTTGKSMGSIDILDQSQIFSKKIQKSGTKNLMVDVHEDDNSSSKAKVLKVKCASTDKLPDKPTPATSLNSDIPVTSDAEIGTLPPPIKFNKIKFSNKMRAEDDSNEAYKPSILVRPPMETAESHRSKKIVIKQLKDSTSVDEGFLDGSSGMEYRKTKKINELSYMGQQEREYLYEETLGRKKMDDKRLWEEEERRRIAVRQREERAKIYERQKALEEQEKLAAIESYQDAIRREREEEERLKEKKKKKKKTEIRDDYLDDFLPRRNDRRIPDRDRSVKRRQTFESGRHAKEHAPPTKRRRGGEVGLSNILEEIVDTLKNNVNVSYLFLKPVTRKEAPDYHKYVKRPMDLSTIKEKARKLEYKNRGQFRHDVAQITINAHLYNDGRNPGIPPLADQLLEICDYLLEENESILAEAESAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="31726" PGL_stop="39232"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31726" e_stop="31819"/>
            <exon e_start="32032" e_stop="32153"/>
            <exon e_start="32744" e_stop="32819"/>
            <exon e_start="33545" e_stop="33603"/>
            <exon e_start="35967" e_stop="36460"/>
            <exon e_start="36545" e_stop="36705"/>
            <exon e_start="36809" e_stop="37012"/>
            <exon e_start="37248" e_stop="37485"/>
            <exon e_start="38297" e_stop="39232"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.248" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31726" e_stop="31819" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31820" i_stop="32031" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32032" e_stop="32153" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="32154" i_stop="32743" i_length="590"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32744" e_stop="32819" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32820" i_stop="33544" i_length="725"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33545" e_stop="33603" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33604" i_stop="35966" i_length="2363"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35967" e_stop="36460" e_length="494"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.963">
            <gDNA_intron_boundary i_start="36461" i_stop="36544" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36545" e_stop="36705" e_length="161"/>
          </exon>
          <intron i_serial="6" don_prob="0.248" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36706" i_stop="36808" i_length="103"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="36809" e_stop="37012" e_length="204"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.985">
            <gDNA_intron_boundary i_start="37013" i_stop="37247" i_length="235"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="37248" e_stop="37485" e_length="238"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37486" i_stop="38296" i_length="811"/>
          </intron>
          <exon e_serial="9" e_score="0.996">
            <gDNA_exon_boundary e_start="38297" e_stop="39232" e_length="936"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31726" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="36460"/>
              <exon start="36545" stop="36705"/>
              <exon start="36809" stop="37012"/>
              <exon start="37248" stop="37485"/>
              <exon start="38297" stop="39214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31754" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="36190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31758" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31759" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="36228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31759" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="36097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31767" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="36399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31775" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="36386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31790" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="35985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="36199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36881" stop="37012"/>
              <exon start="37248" stop="37485"/>
              <exon start="38297" stop="38658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36884" stop="37012"/>
              <exon start="37248" stop="37485"/>
              <exon start="38297" stop="38541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36884" stop="37012"/>
              <exon start="37248" stop="37485"/>
              <exon start="38297" stop="38517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36885" stop="37012"/>
              <exon start="37248" stop="37485"/>
              <exon start="38297" stop="38665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37287" stop="37485"/>
              <exon start="38297" stop="38420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37313" stop="37485"/>
              <exon start="38297" stop="38790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37313" stop="37485"/>
              <exon start="38297" stop="38750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37321" stop="37485"/>
              <exon start="38297" stop="38661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37364" stop="37485"/>
              <exon start="38297" stop="38771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37364" stop="37485"/>
              <exon start="38297" stop="38721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37386" stop="37485"/>
              <exon start="38297" stop="39001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37386" stop="37485"/>
              <exon start="38297" stop="38931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38332" stop="38915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38332" stop="38915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38333" stop="38886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38597" stop="39169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38886" stop="39232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38949" stop="39232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220989" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAACTGTTAAAACTAATAAAGACAGTGTTCAGTTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAG : GGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAG : TGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTT : GTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAG : GTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGACCTCTTTTAACTGGTGACTTGCAAATTACACTCAAGGAAGGCGTTGGAACTTTGGGGGATCTCACATTTACAGACAATTCAAGTTGGATAAGGAGCAGGAAGTTCAGACTTGGCATGAAAGTTGCTTCTGGATATTGTGAAGGAGTACGCATACGAGAAGCCAAGACTGAGGCTTTCACTGTTAAAGATCACCGTGGAGAAT : TGTACAAGAAACATTATCCACCAGCTCTAAATGATGATGTCTGGAGATTGGAGAAGATTGGCAAGGATGGTTCTTTCCACAAGAGGCTAAACAAGGCCGGGATATTTACTGTTGAAGACTTCCTTAGGCTTGTGGTCCGAGACCCACAGAAACTAAGAAGT : ATCCTTGGAAGTGGTATGTCAAATAAGATGTGGGAGGCTCTAATAGAGCATGCAAAGACCTGTGTCTTGAGTGGGAAGCTTTATGTCTATTATTCTGATGATTCGAGGAACGTTGGTGTTGTTTTCAACAATATTTATGAGCTGAATGGCCTTATAGCTGGTGAACAATACTATTCGGCAGATTCACTTTCAGACAGCCAGAAG : GTATACGTAGATTCTTTGGTCAAGAAGGCATATGATAATTGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAG : GTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTAACCATCGACCATTTGAATAACTATTCACAAGGCCGTGGTCATGCAGGCCCGAGTAATTAGCTTTCGACTCTAGACGGTATATTTTCCGAGGGATTAGTCAATTCGATTGTTTTTCTTTTTTCATGTACAGAAGCCTGTACAGTAAATTCTCTTTTAACACTCTCATTGTTAACTCCATCGTGCTTACTCTCTTTATCTGTTTCAAGATGTAATGTAATGTATAAGTCCTGCAGACCCAAGGGAAATATGCTTTCAAGAACACCTGTGTGTTGAATTCTATATGAACTTTTATGGTAAAAATGATGCTGTTTGGCTTT</gDNA_template>
            <first_frame> Q  T  V  K  T  N  K  D  S  V  Q  F  L  R  E  K  E  K  S  L  R  F  N  *  S  F  K  N  Y  Q  S   : G  K  K  E  G  I  C  L  N  A  D  *  V  Y  G  E  D  K  I  Y  E  E  E  L  G  G  *  *  *  T  A  S  *  A  *  K  T  C  F  S  *  :  C  Y  C  G  S  S  Q  G  G  *  S  S  K  A  L  L  I  F  G  T  D  S  S  E  S   : C  *  *  R  G  G  T  S  I  G  *  V  R  P  C  Q  N  C  W  K  :  V  I  S  *  E  N  *  R  A  R  W  K  *  L  A  A  S  V  *  V  *  A  I  F  A  S  V  H  W  R  Q  S  R  R  R  A  W  C  C  Y  P  C  C  L  N  *  H  N  Y  W  P  S  C  D  C  W  S  *  I  M  Y  K  T  G  R  C  C  A  R  R  *  F  Q  Q  *  R  R  *  R  M  D  T  R  R  I  *  R  S  C  C  *  R  A  *  R  K  E  T  S  F  N  W  *  L  A  N  Y  T  Q  G  R  R  W  N  F  G  G  S  H  I  Y  R  Q  F  K  L  D  K  E  Q  E  V  Q  T  W  H  E  S  C  F  W  I  L  *  R  S  T  H  T  R  S  Q  D  *  G  F  H  C  *  R  S  P  W  R  I :   V  Q  E  T  L  S  T  S  S  K  *  *  C  L  E  I  G  E  D  W  Q  G  W  F  F  P  Q  E  A  K  Q  G  R  D  I  Y  C  *  R  L  P  *  A  C  G  P  R  P  T  E  T  K  K   : Y  P  W  K  W  Y  V  K  *  D  V  G  G  S  N  R  A  C  K  D  L  C  L  E  W  E  A  L  C  L  L  F  *  *  F  E  E  R  W  C  C  F  Q  Q  Y  L  *  A  E  W  P  Y  S  W  *  T  I  L  F  G  R  F  T  F  R  Q  P  E   : G  I  R  R  F  F  G  Q  E  G  I  *  *  L  E  S  S  R  *  I  *  W  Q  V  I  S  E  H  Q  A  K  S  K  S  K  L  F  *  E  R  A  S  C  W  A  S  G  L  P  Q  H  L  G  *  S  A  S  A  V  T  P  S  C  S  S  S  I  R  A  I  F  Y  G  S  Q  L  A  N  W  R :   F  R  L  Q  *  Q  H  G  C  *  D  A  Y  P  K  S  Y  D  E  F  *  F  P  L  T  V  *  E  H  S  I  C  A  S  A  P  N  N  Q  Q  S  S  A  P  E  Y  E  I  *  Q  Q  C  W  P  G  S  W  S  S  T  I  I  F  I  P  D  N  Y  L  I  S  P  T  N  Q  S  *  S  F  *  *  L  V  A  Q  Q  G  Q  G  S  *  R  I  L  V  *  G  G  N  S  N  E  K  Q  *  N  S  *  E  *  *  Y  A  T  F  A  K  T  F  Q  H  G  R  P  W  F  Y  K  C  A  *  R  W  I  W  F  P  I  F  H  A  F  A  I  S  *  F  Q  L  *  *  R  P  H  T  A  R  K  S  C  C  W  L  A  E  N  *  G  C  N  E  V  G  V  L  C  A  E  E  G  S  *  E  A  C  T  A  R  G  T  G  *  *  I  K  S  G  V  E  T  L  G  H  L  D  L  T  I  D  H  L  N  N  Y  S  Q  G  R  G  H  A  G  P  S  N  *  L  S  T  L  D  G  I  F  S  E  G  L  V  N  S  I  V  F  L  F  S  C  T  E  A  C  T  V  N  S  L  L  T  L  S  L  L  T  P  S  C  L  L  S  L  S  V  S  R  C  N  V  M  Y  K  S  C  R  P  K  G  N  M  L  S  R  T  P  V  C  *  I  L  Y  E  L  L  W  *  K  *  C  C  L  A   </first_frame>
            <second_frame>  K  L  L  K  L  I  K  T  V  F  S  S  *  E  R  K  R  N  L  L  G  S  T  K  V  S  R  I  T  N  Q  :  G  K  K  K  V  F  V  *  M  Q  T  R  Y  M  E  R  T  K  S  M  K  R  S  L  E  G  D  D  E  Q  P  P  E  R  K  R  P  A  L  A  S :   V  I  V  E  A  L  K  V  D  S  L  Q  K  L  C  S  S  L  E  P  I  L  R  R  V  :  V  S  E  E  V  E  R  A  L  A  K  L  G  P  A  R  I  A  G  R :   S  S  P  K  R  I  E  G  P  D  G  S  N  L  Q  L  Q  F  R  S  R  L  S  L  P  L  F  T  G  G  K  V  E  G  E  H  G  A  A  I  H  V  V  L  I  D  T  T  T  G  H  L  V  T  A  G  P  E  S  C  I  K  L  D  V  V  V  L  E  G  D  F  N  N  E  E  D  E  G  W  T  Q  E  E  F  D  G  H  V  V  K  E  R  E  G  K  R  P  L  L  T  G  D  L  Q  I  T  L  K  E  G  V  G  T  L  G  D  L  T  F  T  D  N  S  S  W  I  R  S  R  K  F  R  L  G  M  K  V  A  S  G  Y  C  E  G  V  R  I  R  E  A  K  T  E  A  F  T  V  K  D  H  R  G  E   : L  Y  K  K  H  Y  P  P  A  L  N  D  D  V  W  R  L  E  K  I  G  K  D  G  S  F  H  K  R  L  N  K  A  G  I  F  T  V  E  D  F  L  R  L  V  V  R  D  P  Q  K  L  R  S  :  I  L  G  S  G  M  S  N  K  M  W  E  A  L  I  E  H  A  K  T  C  V  L  S  G  K  L  Y  V  Y  Y  S  D  D  S  R  N  V  G  V  V  F  N  N  I  Y  E  L  N  G  L  I  A  G  E  Q  Y  Y  S  A  D  S  L  S  D  S  Q  K  :  V  Y  V  D  S  L  V  K  K  A  Y  D  N  W  N  Q  V  V  E  Y  D  G  K  S  F  L  N  I  K  Q  N  Q  N  P  S  S  S  R  N  E  L  P  V  G  P  V  D  Y  P  N  T  L  V  N  Q  L  P  Q  S  R  H  P  V  P  V  Q  S  E  Q  S  S  M  D  P  N  L  L  I  G   : G  S  G  Y  N  D  N  M  V  A  R  M  P  T  Q  S  P  M  M  N  S  N  S  R  S  Q  F  E  S  T  P  F  A  P  Q  H  Q  I  T  S  S  H  Q  L  Q  S  T  R  Y  D  N  N  V  G  L  A  L  G  P  P  Q  S  S  S  F  Q  T  I  T  S  S  L  P  Q  T  N  L  N  P  F  D  D  W  S  H  N  R  D  K  G  V  D  E  F  L  S  E  E  E  I  R  M  R  S  N  E  I  L  E  N  D  D  M  Q  H  L  L  R  L  F  S  M  G  G  H  G  S  I  N  V  P  E  D  G  Y  G  F  P  S  F  M  P  S  P  S  P  S  F  S  Y  D  E  D  R  T  R  P  G  K  A  V  V  G  W  L  K  I  K  A  A  M  R  W  G  F  F  V  R  K  K  A  A  E  R  R  A  Q  L  V  E  L  D  D  E  *  N  L  V  W  K  H  *  G  I  *  T  *  P  S  T  I  *  I  T  I  H  K  A  V  V  M  Q  A  R  V  I  S  F  R  L  *  T  V  Y  F  P  R  D  *  S  I  R  L  F  F  F  F  H  V  Q  K  P  V  Q  *  I  L  F  *  H  S  H  C  *  L  H  R  A  Y  S  L  Y  L  F  Q  D  V  M  *  C  I  S  P  A  D  P  R  E  I  C  F  Q  E  H  L  C  V  E  F  Y  M  N  F  Y  G  K  N  D  A  V  W  L  </second_frame>
            <third_frame>   N  C  *  N  *  *  R  Q  C  S  V  L  E  R  E  R  E  I  S  *  V  Q  L  K  F  Q  E  L  P  I  R :   E  K  R  R  Y  L  S  K  C  R  L  G  I  W  R  G  Q  N  L  *  R  G  A  W  R  V  M  M  N  S  L  L  S  V  K  D  L  L  *  L   : V  L  L  W  K  L  S  R  W  I  V  F  K  S  S  A  H  L  W  N  R  F  F  G  E  L :   L  V  K  R  W  N  E  H  W  L  S  *  A  L  P  E  L  L  E   : G  H  L  L  R  E  L  K  G  P  M  E  V  T  C  S  F  S  L  G  L  G  Y  L  C  L  C  S  L  E  A  K  *  K  E  S  M  V  L  L  S  M  L  S  *  L  T  Q  L  L  A  I  L  *  L  L  V  L  N  H  V  *  N  W  T  L  L  C  *  K  V  I  S  T  M  K  K  M  K  D  G  H  K  K  N  L  T  V  M  L  L  K  S  V  K  E  R  D  L  F  *  L  V  T  C  K  L  H  S  R  K  A  L  E  L  W  G  I  S  H  L  Q  T  I  Q  V  G  *  G  A  G  S  S  D  L  A  *  K  L  L  L  D  I  V  K  E  Y  A  Y  E  K  P  R  L  R  L  S  L  L  K  I  T  V  E  N  :  C  T  R  N  I  I  H  Q  L  *  M  M  M  S  G  D  W  R  R  L  A  R  M  V  L  S  T  R  G  *  T  R  P  G  Y  L  L  L  K  T  S  L  G  L  W  S  E  T  H  R  N  *  E  V :   S  L  E  V  V  C  Q  I  R  C  G  R  L  *  *  S  M  Q  R  P  V  S  *  V  G  S  F  M  S  I  I  L  M  I  R  G  T  L  V  L  F  S  T  I  F  M  S  *  M  A  L  *  L  V  N  N  T  I  R  Q  I  H  F  Q  T  A  R  R :   Y  T  *  I  L  W  S  R  R  H  M  I  I  G  I  K  S  L  N  M  M  A  S  H  F  *  T  S  S  K  I  K  I  Q  A  L  L  G  T  S  F  L  L  G  Q  W  I  T  P  T  P  W  L  I  S  F  R  S  H  A  I  L  F  Q  F  N  P  S  N  L  L  W  I  P  T  C  *  L  E  :  V  Q  V  T  M  T  T  W  L  L  G  C  L  P  K  V  L  *  *  I  L  I  P  A  H  S  L  R  A  L  H  L  R  L  S  T  K  *  P  A  V  I  S  S  R  V  R  D  M  T  T  M  L  A  W  L  L  V  L  H  N  H  L  H  S  R  Q  L  P  H  L  S  H  K  P  I  L  I  L  L  M  I  G  R  T  T  G  T  R  E  L  T  N  S  C  L  R  R  K  F  E  *  E  A  M  K  F  L  R  M  M  I  C  N  I  C  *  D  F  S  A  W  E  A  M  V  L  *  M  C  L  K  M  D  M  V  S  H  L  S  C  L  R  H  L  L  V  S  V  M  M  K  T  A  H  G  Q  E  K  L  L  L  V  G  *  K  L  R  L  Q  *  G  G  G  S  L  C  G  R  R  Q  L  R  G  V  H  S  S  W  N  W  M  M  N  K  I  W  C  G  N  I  R  A  F  R  L  N  H  R  P  F  E  *  L  F  T  R  P  W  S  C  R  P  E  *  L  A  F  D  S  R  R  Y  I  F  R  G  I  S  Q  F  D  C  F  S  F  F  M  Y  R  S  L  Y  S  K  F  S  F  N  T  L  I  V  N  S  I  V  L  T  L  F  I  C  F  K  M  *  C  N  V  *  V  L  Q  T  Q  G  K  Y  A  F  K  N  T  C  V  L  N  S  I  *  T  F  M  V  K  M  M  L  F  G  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32056" stop="32153"/>
                    <exon start="32744" stop="32819"/>
                    <exon start="33545" stop="33603"/>
                    <exon start="35967" stop="36460"/>
                    <exon start="36545" stop="36705"/>
                    <exon start="36809" stop="37012"/>
                    <exon start="37248" stop="37485"/>
                    <exon start="38297" stop="38880"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1911</number_coding_nucleotides>
                  <number_encoded_amino_acids>637</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQTRYMERTKSMKRSLEGDDEQPPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARIAGRSSPKRIEGPDGSNLQLQFRSRLSLPLFTGGKVEGEHGAAIHVVLIDTTTGHLVTAGPESCIKLDVVVLEGDFNNEEDEGWTQEEFDGHVVKEREGKRPLLTGDLQITLKEGVGTLGDLTFTDNSSWIRSRKFRLGMKVASGYCEGVRIREAKTEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDPQKLRSILGSGMSNKMWEALIEHAKTCVLSGKLYVYYSDDSRNVGVVFNNIYELNGLIAGEQYYSADSLSDSQKVYVDSLVKKAYDNWNQVVEYDGKSFLNIKQNQNPSSSRNELPVGPVDYPNTLVNQLPQSRHPVPVQSEQSSMDPNLLIGGSGYNDNMVARMPTQSPMMNSNSRSQFESTPFAPQHQITSSHQLQSTRYDNNVGLALGPPQSSSFQTITSSLPQTNLNPFDDWSHNRDKGVDEFLSEEEIRMRSNEILENDDMQHLLRLFSMGGHGSINVPEDGYGFPSFMPSPSPSFSYDEDRTRPGKAVVGWLKIKAAMRWGFFVRKKAAERRAQLVELDDE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38976" stop="39188"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSTLDGIFSEGLVNSIVFLFSCTEACTVNSLLTLSLLTPSCLLSLSVSRCNVMYKSCRPKGNMLSRTPVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31754" e_stop="31819"/>
            <exon e_start="32032" e_stop="32153"/>
            <exon e_start="32744" e_stop="32819"/>
            <exon e_start="33545" e_stop="33603"/>
            <exon e_start="35967" e_stop="36294"/>
            <exon e_start="38343" e_stop="38365"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31754" e_stop="31819" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31820" i_stop="32031" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32032" e_stop="32153" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="32154" i_stop="32743" i_length="590"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32744" e_stop="32819" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32820" i_stop="33544" i_length="725"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33545" e_stop="33603" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33604" i_stop="35966" i_length="2363"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="35967" e_stop="36294" e_length="328"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36295" i_stop="38342" i_length="2048"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38343" e_stop="38365" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31754" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="36294"/>
              <exon start="38343" stop="38365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31754" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="36190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31758" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31759" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="36228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31759" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="36097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31790" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="35985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="36199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573915" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAGTTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAG : GGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAG : TGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTT : GTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAG : GTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGACCTCTTTTAACTGGTGACTTGCAAATTACACTCAAG : TCCTATGATGAATTCTAATTCCC</gDNA_template>
            <first_frame> F  S  S  *  E  R  K  R  N  L  L  G  S  T  K  V  S  R  I  T  N  Q  :  G  K  K  K  V  F  V  *  M  Q  T  R  Y  M  E  R  T  K  S  M  K  R  S  L  E  G  D  D  E  Q  P  P  E  R  K  R  P  A  L  A  S :   V  I  V  E  A  L  K  V  D  S  L  Q  K  L  C  S  S  L  E  P  I  L  R  R  V  :  V  S  E  E  V  E  R  A  L  A  K  L  G  P  A  R  I  A  G  R :   S  S  P  K  R  I  E  G  P  D  G  S  N  L  Q  L  Q  F  R  S  R  L  S  L  P  L  F  T  G  G  K  V  E  G  E  H  G  A  A  I  H  V  V  L  I  D  T  T  T  G  H  L  V  T  A  G  P  E  S  C  I  K  L  D  V  V  V  L  E  G  D  F  N  N  E  E  D  E  G  W  T  Q  E  E  F  D  G  H  V  V  K  E  R  E  G  K  R  P  L  L  T  G  D  L  Q  I  T  L  K  :  S  Y  D  E  F  *  F   </first_frame>
            <second_frame>  S  V  L  E  R  E  R  E  I  S  *  V  Q  L  K  F  Q  E  L  P  I  R :   E  K  R  R  Y  L  S  K  C  R  L  G  I  W  R  G  Q  N  L  *  R  G  A  W  R  V  M  M  N  S  L  L  S  V  K  D  L  L  *  L   : V  L  L  W  K  L  S  R  W  I  V  F  K  S  S  A  H  L  W  N  R  F  F  G  E  L :   L  V  K  R  W  N  E  H  W  L  S  *  A  L  P  E  L  L  E   : G  H  L  L  R  E  L  K  G  P  M  E  V  T  C  S  F  S  L  G  L  G  Y  L  C  L  C  S  L  E  A  K  *  K  E  S  M  V  L  L  S  M  L  S  *  L  T  Q  L  L  A  I  L  *  L  L  V  L  N  H  V  *  N  W  T  L  L  C  *  K  V  I  S  T  M  K  K  M  K  D  G  H  K  K  N  L  T  V  M  L  L  K  S  V  K  E  R  D  L  F  *  L  V  T  C  K  L  H  S  S :   P  M  M  N  S  N  S  </second_frame>
            <third_frame>   Q  F  L  R  E  K  E  K  S  L  R  F  N  *  S  F  K  N  Y  Q  S   : G  K  K  E  G  I  C  L  N  A  D  *  V  Y  G  E  D  K  I  Y  E  E  E  L  G  G  *  *  *  T  A  S  *  A  *  K  T  C  F  S  *  :  C  Y  C  G  S  S  Q  G  G  *  S  S  K  A  L  L  I  F  G  T  D  S  S  E  S   : C  *  *  R  G  G  T  S  I  G  *  V  R  P  C  Q  N  C  W  K  :  V  I  S  *  E  N  *  R  A  R  W  K  *  L  A  A  S  V  *  V  *  A  I  F  A  S  V  H  W  R  Q  S  R  R  R  A  W  C  C  Y  P  C  C  L  N  *  H  N  Y  W  P  S  C  D  C  W  S  *  I  M  Y  K  T  G  R  C  C  A  R  R  *  F  Q  Q  *  R  R  *  R  M  D  T  R  R  I  *  R  S  C  C  *  R  A  *  R  K  E  T  S  F  N  W  *  L  A  N  Y  T  Q   : V  L  *  *  I  L  I  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32056" stop="32153"/>
                    <exon start="32744" stop="32819"/>
                    <exon start="33545" stop="33603"/>
                    <exon start="35967" stop="36294"/>
                    <exon start="38343" stop="38360"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQTRYMERTKSMKRSLEGDDEQPPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARIAGRSSPKRIEGPDGSNLQLQFRSRLSLPLFTGGKVEGEHGAAIHVVLIDTTTGHLVTAGPESCIKLDVVVLEGDFNNEEDEGWTQEEFDGHVVKEREGKRPLLTGDLQITLKSYDEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="31727" e_stop="31819"/>
            <exon e_start="32032" e_stop="32153"/>
            <exon e_start="32744" e_stop="32819"/>
            <exon e_start="33545" e_stop="33603"/>
            <exon e_start="35967" e_stop="36154"/>
            <exon e_start="36270" e_stop="36290"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.952"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31727" e_stop="31819" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31820" i_stop="32031" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32032" e_stop="32153" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="32154" i_stop="32743" i_length="590"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32744" e_stop="32819" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32820" i_stop="33544" i_length="725"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33545" e_stop="33603" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33604" i_stop="35966" i_length="2363"/>
          </intron>
          <exon e_serial="5" e_score="0.952">
            <gDNA_exon_boundary e_start="35967" e_stop="36154" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36155" i_stop="36269" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="0.952">
            <gDNA_exon_boundary e_start="36270" e_stop="36290" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31727" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="36154"/>
              <exon start="36270" stop="36290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31758" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31759" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="36097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31790" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="35985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTGTTAAAACTAATAAAGACAGTGTTCAGTTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAG : GGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAG : TGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTT : GTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAG : GTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAAC : TGGTGACTTGCAAATTACACT</gDNA_template>
            <first_frame> K  L  L  K  L  I  K  T  V  F  S  S  *  E  R  K  R  N  L  L  G  S  T  K  V  S  R  I  T  N  Q  :  G  K  K  K  V  F  V  *  M  Q  T  R  Y  M  E  R  T  K  S  M  K  R  S  L  E  G  D  D  E  Q  P  P  E  R  K  R  P  A  L  A  S :   V  I  V  E  A  L  K  V  D  S  L  Q  K  L  C  S  S  L  E  P  I  L  R  R  V  :  V  S  E  E  V  E  R  A  L  A  K  L  G  P  A  R  I  A  G  R :   S  S  P  K  R  I  E  G  P  D  G  S  N  L  Q  L  Q  F  R  S  R  L  S  L  P  L  F  T  G  G  K  V  E  G  E  H  G  A  A  I  H  V  V  L  I  D  T  T  T  G  H  L  V  T  A  G  P  E  S  C  I  K   : L  V  T  C  K  L  H  </first_frame>
            <second_frame>  N  C  *  N  *  *  R  Q  C  S  V  L  E  R  E  R  E  I  S  *  V  Q  L  K  F  Q  E  L  P  I  R :   E  K  R  R  Y  L  S  K  C  R  L  G  I  W  R  G  Q  N  L  *  R  G  A  W  R  V  M  M  N  S  L  L  S  V  K  D  L  L  *  L   : V  L  L  W  K  L  S  R  W  I  V  F  K  S  S  A  H  L  W  N  R  F  F  G  E  L :   L  V  K  R  W  N  E  H  W  L  S  *  A  L  P  E  L  L  E   : G  H  L  L  R  E  L  K  G  P  M  E  V  T  C  S  F  S  L  G  L  G  Y  L  C  L  C  S  L  E  A  K  *  K  E  S  M  V  L  L  S  M  L  S  *  L  T  Q  L  L  A  I  L  *  L  L  V  L  N  H  V  *  N  :  W  *  L  A  N  Y  T </second_frame>
            <third_frame>   T  V  K  T  N  K  D  S  V  Q  F  L  R  E  K  E  K  S  L  R  F  N  *  S  F  K  N  Y  Q  S   : G  K  K  E  G  I  C  L  N  A  D  *  V  Y  G  E  D  K  I  Y  E  E  E  L  G  G  *  *  *  T  A  S  *  A  *  K  T  C  F  S  *  :  C  Y  C  G  S  S  Q  G  G  *  S  S  K  A  L  L  I  F  G  T  D  S  S  E  S   : C  *  *  R  G  G  T  S  I  G  *  V  R  P  C  Q  N  C  W  K  :  V  I  S  *  E  N  *  R  A  R  W  K  *  L  A  A  S  V  *  V  *  A  I  F  A  S  V  H  W  R  Q  S  R  R  R  A  W  C  C  Y  P  C  C  L  N  *  H  N  Y  W  P  S  C  D  C  W  S  *  I  M  Y  K  T :   G  D  L  Q  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32056" stop="32153"/>
                    <exon start="32744" stop="32819"/>
                    <exon start="33545" stop="33603"/>
                    <exon start="35967" stop="36154"/>
                    <exon start="36270" stop="36289"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQTRYMERTKSMKRSLEGDDEQPPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARIAGRSSPKRIEGPDGSNLQLQFRSRLSLPLFTGGKVEGEHGAAIHVVLIDTTTGHLVTAGPESCIKLVTCKLH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="35725" e_stop="35740"/>
            <exon e_start="35960" e_stop="36409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.653" acc_prob="0.716" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35725" e_stop="35740" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.653" acc_prob="0.716">
            <gDNA_intron_boundary i_start="35741" i_stop="35959" i_length="219"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="35960" e_stop="36409" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35725" stop="35740"/>
              <exon start="35960" stop="36409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGGATCAAGAAGAT : GTTTCAGGTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGACCTCTTTTAACTGGTGACTTGCAAATTACACTCAAGGAAGGCGTTGGAACTTTGGGGGATCTCACATTTACAGACAATTCAAGTTGGATAAGGAGCAGGAAGTTCAGACTTGGCATGAAAGTTGCTTCTGGATATTGTGAAGGAGTACGCA</gDNA_template>
            <first_frame> V  G  S  R  R   : C  F  R  S  S  P  K  R  I  E  G  P  D  G  S  N  L  Q  L  Q  F  R  S  R  L  S  L  P  L  F  T  G  G  K  V  E  G  E  H  G  A  A  I  H  V  V  L  I  D  T  T  T  G  H  L  V  T  A  G  P  E  S  C  I  K  L  D  V  V  V  L  E  G  D  F  N  N  E  E  D  E  G  W  T  Q  E  E  F  D  G  H  V  V  K  E  R  E  G  K  R  P  L  L  T  G  D  L  Q  I  T  L  K  E  G  V  G  T  L  G  D  L  T  F  T  D  N  S  S  W  I  R  S  R  K  F  R  L  G  M  K  V  A  S  G  Y  C  E  G  V  R  </first_frame>
            <second_frame>  L  D  Q  E  D  :  V  S  G  H  L  L  R  E  L  K  G  P  M  E  V  T  C  S  F  S  L  G  L  G  Y  L  C  L  C  S  L  E  A  K  *  K  E  S  M  V  L  L  S  M  L  S  *  L  T  Q  L  L  A  I  L  *  L  L  V  L  N  H  V  *  N  W  T  L  L  C  *  K  V  I  S  T  M  K  K  M  K  D  G  H  K  K  N  L  T  V  M  L  L  K  S  V  K  E  R  D  L  F  *  L  V  T  C  K  L  H  S  R  K  A  L  E  L  W  G  I  S  H  L  Q  T  I  Q  V  G  *  G  A  G  S  S  D  L  A  *  K  L  L  L  D  I  V  K  E  Y  A </second_frame>
            <third_frame>   W  I  K  K  M :   F  Q  V  I  S  *  E  N  *  R  A  R  W  K  *  L  A  A  S  V  *  V  *  A  I  F  A  S  V  H  W  R  Q  S  R  R  R  A  W  C  C  Y  P  C  C  L  N  *  H  N  Y  W  P  S  C  D  C  W  S  *  I  M  Y  K  T  G  R  C  C  A  R  R  *  F  Q  Q  *  R  R  *  R  M  D  T  R  R  I  *  R  S  C  C  *  R  A  *  R  K  E  T  S  F  N  W  *  L  A  N  Y  T  Q  G  R  R  W  N  F  G  G  S  H  I  Y  R  Q  F  K  L  D  K  E  Q  E  V  Q  T  W  H  E  S  C  F  W  I  L  *  R  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35725" stop="35740"/>
                    <exon start="35960" stop="36408"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGSRRCFRSSPKRIEGPDGSNLQLQFRSRLSLPLFTGGKVEGEHGAAIHVVLIDTTTGHLVTAGPESCIKLDVVVLEGDFNNEEDEGWTQEEFDGHVVKEREGKRPLLTGDLQITLKEGVGTLGDLTFTDNSSWIRSRKFRLGMKVASGYCEGVR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="39218" PGL_stop="38364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39218" e_stop="38364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="39218" e_stop="38364" e_length="855"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39218" stop="38528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39190" stop="38435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39162" stop="38364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602626" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTTTTACCATAAAAGTTCATATAGAATTCAACACACAGGTGTTCTTGAAAGCATATTTCCCTTGGGTCTGCAGGACTTATACATTACATTACATCTTGAAACAGATAAAGAGAGTAAGCACGATGGAGTTAACAATGAGAGTGTTAAAAGAGAATTTACTGTACAGGCTTCTGTACATGAAAAAAGAAAAACAATCGAATTGACTAATCCCTCGGAAAATATACCGTCTAGAGTCGAAAGCTAATTACTCGGGCCTGCATGACCACGGCCTTGTGAATAGTTATTCAAATGGTCGATGGTTAAGTCTAAATGCCCTAATGTTTCCACACCAGATTTTATTCATCATCCAGTTCCACGAGCTGTGCACGCCTCTCAGCTGCCTTCTTCCGCACAAAGAACCCCCACCTCATTGCAGCCTTAATTTTCAGCCAACCAACAACAGCTTTTCCTGGCCGTGTGCGGTCTTCATCATAACTGAAACTAGGAGATGGCGAAGGCATGAAAGATGGGAAACCATATCCATCTTCAGGCACATTTATAGAACCATGGCCTCCCATGCTGAAAAGTCTTAGCAAATGTTGCATATCATCATTCTCAAGAATTTCATTGCTTCTCATTCGAATTTCCTCCTCAGACAAGAATTCGTCAACTCCCTTGTCCCTGTTGTGCGACCAATCATCAAAAGGATTAAGATTGGTTTGTGGGAGAGATGAGGTAATTGTCTGGAATGAAGATGATTGTGGAGGACCAAGAGCCAGGCCAACATTGTTGTCATATCTCGTACTCTGGAGCTGATGACTGCTGGTTATTTGGTGCTGAGGCGCAAATGGAGTGCTCTCAAACTGTGAGCGG</gDNA_template>
            <first_frame> S  F  L  P  *  K  F  I  *  N  S  T  H  R  C  S  *  K  H  I  S  L  G  S  A  G  L  I  H  Y  I  T  S  *  N  R  *  R  E  *  A  R  W  S  *  Q  *  E  C  *  K  R  I  Y  C  T  G  F  C  T  *  K  K  K  N  N  R  I  D  *  S  L  G  K  Y  T  V  *  S  R  K  L  I  T  R  A  C  M  T  T  A  L  *  I  V  I  Q  M  V  D  G  *  V  *  M  P  *  C  F  H  T  R  F  Y  S  S  S  S  S  T  S  C  A  R  L  S  A  A  F  F  R  T  K  N  P  H  L  I  A  A  L  I  F  S  Q  P  T  T  A  F  P  G  R  V  R  S  S  S  *  L  K  L  G  D  G  E  G  M  K  D  G  K  P  Y  P  S  S  G  T  F  I  E  P  W  P  P  M  L  K  S  L  S  K  C  C  I  S  S  F  S  R  I  S  L  L  L  I  R  I  S  S  S  D  K  N  S  S  T  P  L  S  L  L  C  D  Q  S  S  K  G  L  R  L  V  C  G  R  D  E  V  I  V  W  N  E  D  D  C  G  G  P  R  A  R  P  T  L  L  S  Y  L  V  L  W  S  *  *  L  L  V  I  W  C  *  G  A  N  G  V  L  S  N  C  E  R </first_frame>
            <second_frame>  H  F  Y  H  K  S  S  Y  R  I  Q  H  T  G  V  L  E  S  I  F  P  L  G  L  Q  D  L  Y  I  T  L  H  L  E  T  D  K  E  S  K  H  D  G  V  N  N  E  S  V  K  R  E  F  T  V  Q  A  S  V  H  E  K  R  K  T  I  E  L  T  N  P  S  E  N  I  P  S  R  V  E  S  *  L  L  G  P  A  *  P  R  P  C  E  *  L  F  K  W  S  M  V  K  S  K  C  P  N  V  S  T  P  D  F  I  H  H  P  V  P  R  A  V  H  A  S  Q  L  P  S  S  A  Q  R  T  P  T  S  L  Q  P  *  F  S  A  N  Q  Q  Q  L  F  L  A  V  C  G  L  H  H  N  *  N  *  E  M  A  K  A  *  K  M  G  N  H  I  H  L  Q  A  H  L  *  N  H  G  L  P  C  *  K  V  L  A  N  V  A  Y  H  H  S  Q  E  F  H  C  F  S  F  E  F  P  P  Q  T  R  I  R  Q  L  P  C  P  C  C  A  T  N  H  Q  K  D  *  D  W  F  V  G  E  M  R  *  L  S  G  M  K  M  I  V  E  D  Q  E  P  G  Q  H  C  C  H  I  S  Y  S  G  A  D  D  C  W  L  F  G  A  E  A  Q  M  E  C  S  Q  T  V  S   </second_frame>
            <third_frame>   I  F  T  I  K  V  H  I  E  F  N  T  Q  V  F  L  K  A  Y  F  P  W  V  C  R  T  Y  T  L  H  Y  I  L  K  Q  I  K  R  V  S  T  M  E  L  T  M  R  V  L  K  E  N  L  L  Y  R  L  L  Y  M  K  K  E  K  Q  S  N  *  L  I  P  R  K  I  Y  R  L  E  S  K  A  N  Y  S  G  L  H  D  H  G  L  V  N  S  Y  S  N  G  R  W  L  S  L  N  A  L  M  F  P  H  Q  I  L  F  I  I  Q  F  H  E  L  C  T  P  L  S  C  L  L  P  H  K  E  P  P  P  H  C  S  L  N  F  Q  P  T  N  N  S  F  S  W  P  C  A  V  F  I  I  T  E  T  R  R  W  R  R  H  E  R  W  E  T  I  S  I  F  R  H  I  Y  R  T  M  A  S  H  A  E  K  S  *  Q  M  L  H  I  I  I  L  K  N  F  I  A  S  H  S  N  F  L  L  R  Q  E  F  V  N  S  L  V  P  V  V  R  P  I  I  K  R  I  K  I  G  L  W  E  R  *  G  N  C  L  E  *  R  *  L  W  R  T  K  S  Q  A  N  I  V  V  I  S  R  T  L  E  L  M  T  A  G  Y  L  V  L  R  R  K  W  S  A  L  K  L  *  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39012" stop="38644"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIPRKIYRLESKANYSGLHDHGLVNSYSNGRWLSLNALMFPHQILFIIQFHELCTPLSCLLPHKEPPPHCSLNFQPTNNSFSWPCAVFIITETRRWRRHERWETISIFRHIYRTMASHAEKS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38741" stop="38421"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKLGDGEGMKDGKPYPSSGTFIEPWPPMLKSLSKCCISSFSRISLLLIRISSSDKNSSTPLSLLCDQSSKGLRLVCGRDEVIVWNEDDCGGPRARPTLLSYLVLWS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39216" stop="39013"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFTIKVHIEFNTQVFLKAYFPWVCRTYTLHYILKQIKRVSTMELTMRVLKENLLYRLLYMKKEKQSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="49562" PGL_stop="54070"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49562" e_stop="49658"/>
            <exon e_start="50556" e_stop="50668"/>
            <exon e_start="51378" e_stop="51600"/>
            <exon e_start="52258" e_stop="52451"/>
            <exon e_start="53432" e_stop="54070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49562" e_stop="49658" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.965">
            <gDNA_intron_boundary i_start="49659" i_stop="50555" i_length="897"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50556" e_stop="50668" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.939">
            <gDNA_intron_boundary i_start="50669" i_stop="51377" i_length="709"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51378" e_stop="51600" e_length="223"/>
          </exon>
          <intron i_serial="3" don_prob="0.943" acc_prob="0.995">
            <gDNA_intron_boundary i_start="51601" i_stop="52257" i_length="657"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52258" e_stop="52451" e_length="194"/>
          </exon>
          <intron i_serial="4" don_prob="0.909" acc_prob="0.983">
            <gDNA_intron_boundary i_start="52452" i_stop="53431" i_length="980"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="53432" e_stop="54070" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49562" stop="49658"/>
              <exon start="50556" stop="50668"/>
              <exon start="51378" stop="51575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50585" stop="50668"/>
              <exon start="51378" stop="51600"/>
              <exon start="52258" stop="52451"/>
              <exon start="53432" stop="53599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50585" stop="50668"/>
              <exon start="51378" stop="51600"/>
              <exon start="52258" stop="52451"/>
              <exon start="53432" stop="53539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50586" stop="50668"/>
              <exon start="51378" stop="51600"/>
              <exon start="52258" stop="52388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53432" stop="54070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53511" stop="54070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393319" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGGCATTATTTTCATCAAGAAATTCATCAAGATCTAGGTCCTCTCTTCCATATTTGGTGTTTCTCTTAATTGCTGCCTTTTTTGTCTTCAAG : GTAGATATACTCATATCTCAGTCTTTTAGTTCAGCCCGTCGCAACCTGGAAAAAACTCCTAATCGTATCGTTGTGAACCCCCAAAAATCATCGGAAGAACGTGTTGTTGACAG : CCTCCCTGTAGTTTTAGTAAATGGTACATTTGACCAGCATATTATGATATCATGGGGAGATGACAGAGGAAAAATACTTGAAAATGGAGAGCTTTTAACACTCTCCTTAGACAAGAAGTCTGGATCAGGCTTTCAGTCTAAAAAAGAGTACCTCTTTGCTAAAATTGATATGCAAATTAAGCTCGTCCCTGGAAATTCTGCTGGCACTGTTACTACGTTTTAC : CTATCATCACAAGGGAACAAGCATGATGAAATAGATTTTGAATTCTTGGGGAATTCAACAGGGAACCCTTATACTCTTCATACAAATGTTTTTAGTTTAGGCAAAGGCAATAGGGAACAACAATTCTTCTTGTGGTTTGATCCAACTGCAGATTATCACACATATTCAATCCTATGGAATTCTAAATGTATTAT : ATTCTATGTTGATGATATACCAATTAGAGAATACAAAAATCCAGAGAGACTTGGTCTTTCATATTTAAAATACCAACCAATGAGACTATACTCAAGTCTATGGAACGCAGATGATTGGGCTACACAAGGTGGTCGTATCAAAACCAATTGGGAACTAGCACCTTTTGTAGCGTCCTACAAAAATTTCACATATGAAGCTTGTATTTATTCAAGATTAACTAGTTCATCTTCATGTGATATCGACTCTCCAACTCCTATCAACAACGCTTGGTTAACATATGAGTTAGATCGAACAAGTCGTGTTAGAATGAAAGCTTTGCAGAAAAAACATATGATTTATGATTATTGCAACGATAAATGGAGATTTCCTAAAGGTCCTGCTCCTGAATGCAAGCTTCTTCAATAACATTATAGTTTTTTTTGTTTATTATGTATAATGTTTAATATATTTTGTATTTTTGAATTTTAGGTTTAAATTCCTAGGAGAAAAGAAAAAAAAAGGAACATTTTAGTTCCTTTTTAGAAAATTAAAGTTACTTTTAGTTTGGGCCATTGGGCCTAGCTAGAACTTTGAGTATTTTTCAAAAAAAAAATAGTTATATTTGCTAAATATGATTTATAAGTTATATTTATTCAGAT</gDNA_template>
            <first_frame> *  N  G  I  I  F  I  K  K  F  I  K  I  *  V  L  S  S  I  F  G  V  S  L  N  C  C  L  F  C  L  Q   : G  R  Y  T  H  I  S  V  F  *  F  S  P  S  Q  P  G  K  N  S  *  S  Y  R  C  E  P  P  K  I  I  G  R  T  C  C  *  Q  :  P  P  C  S  F  S  K  W  Y  I  *  P  A  Y  Y  D  I  M  G  R  *  Q  R  K  N  T  *  K  W  R  A  F  N  T  L  L  R  Q  E  V  W  I  R  L  S  V  *  K  R  V  P  L  C  *  N  *  Y  A  N  *  A  R  P  W  K  F  C  W  H  C  Y  Y  V  L   : P  I  I  T  R  E  Q  A  *  *  N  R  F  *  I  L  G  E  F  N  R  E  P  L  Y  S  S  Y  K  C  F  *  F  R  Q  R  Q  *  G  T  T  I  L  L  V  V  *  S  N  C  R  L  S  H  I  F  N  P  M  E  F  *  M  Y  Y  :  I  L  C  *  *  Y  T  N  *  R  I  Q  K  S  R  E  T  W  S  F  I  F  K  I  P  T  N  E  T  I  L  K  S  M  E  R  R  *  L  G  Y  T  R  W  S  Y  Q  N  Q  L  G  T  S  T  F  C  S  V  L  Q  K  F  H  I  *  S  L  Y  L  F  K  I  N  *  F  I  F  M  *  Y  R  L  S  N  S  Y  Q  Q  R  L  V  N  I  *  V  R  S  N  K  S  C  *  N  E  S  F  A  E  K  T  Y  D  L  *  L  L  Q  R  *  M  E  I  S  *  R  S  C  S  *  M  Q  A  S  S  I  T  L  *  F  F  L  F  I  M  Y  N  V  *  Y  I  L  Y  F  *  I  L  G  L  N  S  *  E  K  R  K  K  K  E  H  F  S  S  F  L  E  N  *  S  Y  F  *  F  G  P  L  G  L  A  R  T  L  S  I  F  Q  K  K  N  S  Y  I  C  *  I  *  F  I  S  Y  I  Y  S  D </first_frame>
            <second_frame>  K  M  A  L  F  S  S  R  N  S  S  R  S  R  S  S  L  P  Y  L  V  F  L  L  I  A  A  F  F  V  F  K  :  V  D  I  L  I  S  Q  S  F  S  S  A  R  R  N  L  E  K  T  P  N  R  I  V  V  N  P  Q  K  S  S  E  E  R  V  V  D  S :   L  P  V  V  L  V  N  G  T  F  D  Q  H  I  M  I  S  W  G  D  D  R  G  K  I  L  E  N  G  E  L  L  T  L  S  L  D  K  K  S  G  S  G  F  Q  S  K  K  E  Y  L  F  A  K  I  D  M  Q  I  K  L  V  P  G  N  S  A  G  T  V  T  T  F  Y  :  L  S  S  Q  G  N  K  H  D  E  I  D  F  E  F  L  G  N  S  T  G  N  P  Y  T  L  H  T  N  V  F  S  L  G  K  G  N  R  E  Q  Q  F  F  L  W  F  D  P  T  A  D  Y  H  T  Y  S  I  L  W  N  S  K  C  I  I :   F  Y  V  D  D  I  P  I  R  E  Y  K  N  P  E  R  L  G  L  S  Y  L  K  Y  Q  P  M  R  L  Y  S  S  L  W  N  A  D  D  W  A  T  Q  G  G  R  I  K  T  N  W  E  L  A  P  F  V  A  S  Y  K  N  F  T  Y  E  A  C  I  Y  S  R  L  T  S  S  S  S  C  D  I  D  S  P  T  P  I  N  N  A  W  L  T  Y  E  L  D  R  T  S  R  V  R  M  K  A  L  Q  K  K  H  M  I  Y  D  Y  C  N  D  K  W  R  F  P  K  G  P  A  P  E  C  K  L  L  Q  *  H  Y  S  F  F  C  L  L  C  I  M  F  N  I  F  C  I  F  E  F  *  V  *  I  P  R  R  K  E  K  K  R  N  I  L  V  P  F  *  K  I  K  V  T  F  S  L  G  H  W  A  *  L  E  L  *  V  F  F  K  K  K  I  V  I  F  A  K  Y  D  L  *  V  I  F  I  Q   </second_frame>
            <third_frame>   K  W  H  Y  F  H  Q  E  I  H  Q  D  L  G  P  L  F  H  I  W  C  F  S  *  L  L  P  F  L  S  S  R :   *  I  Y  S  Y  L  S  L  L  V  Q  P  V  A  T  W  K  K  L  L  I  V  S  L  *  T  P  K  N  H  R  K  N  V  L  L  T   : A  S  L  *  F  *  *  M  V  H  L  T  S  I  L  *  Y  H  G  E  M  T  E  E  K  Y  L  K  M  E  S  F  *  H  S  P  *  T  R  S  L  D  Q  A  F  S  L  K  K  S  T  S  L  L  K  L  I  C  K  L  S  S  S  L  E  I  L  L  A  L  L  L  R  F  T :   Y  H  H  K  G  T  S  M  M  K  *  I  L  N  S  W  G  I  Q  Q  G  T  L  I  L  F  I  Q  M  F  L  V  *  A  K  A  I  G  N  N  N  S  S  C  G  L  I  Q  L  Q  I  I  T  H  I  Q  S  Y  G  I  L  N  V  L   : Y  S  M  L  M  I  Y  Q  L  E  N  T  K  I  Q  R  D  L  V  F  H  I  *  N  T  N  Q  *  D  Y  T  Q  V  Y  G  T  Q  M  I  G  L  H  K  V  V  V  S  K  P  I  G  N  *  H  L  L  *  R  P  T  K  I  S  H  M  K  L  V  F  I  Q  D  *  L  V  H  L  H  V  I  S  T  L  Q  L  L  S  T  T  L  G  *  H  M  S  *  I  E  Q  V  V  L  E  *  K  L  C  R  K  N  I  *  F  M  I  I  A  T  I  N  G  D  F  L  K  V  L  L  L  N  A  S  F  F  N  N  I  I  V  F  F  V  Y  Y  V  *  C  L  I  Y  F  V  F  L  N  F  R  F  K  F  L  G  E  K  K  K  K  G  T  F  *  F  L  F  R  K  L  K  L  L  L  V  W  A  I  G  P  S  *  N  F  E  Y  F  S  K  K  K  *  L  Y  L  L  N  M  I  Y  K  L  Y  L  F  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49563" stop="49658"/>
                    <exon start="50556" stop="50668"/>
                    <exon start="51378" stop="51600"/>
                    <exon start="52258" stop="52451"/>
                    <exon start="53432" stop="53837"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1029</number_coding_nucleotides>
                  <number_encoded_amino_acids>343</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMALFSSRNSSRSRSSLPYLVFLLIAAFFVFKVDILISQSFSSARRNLEKTPNRIVVNPQKSSEERVVDSLPVVLVNGTFDQHIMISWGDDRGKILENGELLTLSLDKKSGSGFQSKKEYLFAKIDMQIKLVPGNSAGTVTTFYLSSQGNKHDEIDFEFLGNSTGNPYTLHTNVFSLGKGNREQQFFLWFDPTADYHTYSILWNSKCIIFYVDDIPIREYKNPERLGLSYLKYQPMRLYSSLWNADDWATQGGRIKTNWELAPFVASYKNFTYEACIYSRLTSSSSCDIDSPTPINNAWLTYELDRTSRVRMKALQKKHMIYDYCNDKWRFPKGPAPECKLLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="59719" PGL_stop="61430"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59719" e_stop="59853"/>
            <exon e_start="59954" e_stop="60147"/>
            <exon e_start="60872" e_stop="61430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.770" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59719" e_stop="59853" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.770" acc_prob="0.982">
            <gDNA_intron_boundary i_start="59854" i_stop="59953" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59954" e_stop="60147" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.990">
            <gDNA_intron_boundary i_start="60148" i_stop="60871" i_length="724"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60872" e_stop="61430" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59719" stop="59853"/>
              <exon start="59954" stop="60147"/>
              <exon start="60872" stop="61191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59720" stop="59853"/>
              <exon start="59954" stop="60147"/>
              <exon start="60872" stop="61138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59811" stop="59853"/>
              <exon start="59954" stop="60147"/>
              <exon start="60872" stop="61425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59963" stop="60147"/>
              <exon start="60872" stop="61428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60033" stop="60147"/>
              <exon start="60872" stop="61428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60055" stop="60147"/>
              <exon start="60872" stop="61428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60055" stop="60147"/>
              <exon start="60872" stop="61428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60058" stop="60147"/>
              <exon start="60872" stop="61428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60058" stop="60147"/>
              <exon start="60872" stop="61428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60107" stop="60147"/>
              <exon start="60872" stop="61295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60968" stop="61430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60973" stop="61428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696700" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATACTTACTCTTACACTTGATAATATTTCAGGTTCTGGATTTCAATCAAAGAAGGAATATTTATTTGGGAAAATTGATATGCAAATAAAATTAGTTCAAGGGAACTCTGCTGGCACTGTCACCGCATACTAT : TTGTCATCACAAGGATCAAGTCATGATGAGATAGATTTTGAGTTTCTTGGTAATTTAAGTGGAGAGCCATATACACTACATACAAATGTGTATACACAAGGCAAAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTGCTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGT : ATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATTTCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTAGTTAATTAATTAATTAAATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCTAAGTGATAAGGGAGGACTACTATTGTAATATTTATATGTTTATGTTTTTAATAATGGAAGTTGAAAGTGTTTATGTACTTAAAAGT</gDNA_template>
            <first_frame> E  I  L  T  L  T  L  D  N  I  S  G  S  G  F  Q  S  K  K  E  Y  L  F  G  K  I  D  M  Q  I  K  L  V  Q  G  N  S  A  G  T  V  T  A  Y  Y  :  L  S  S  Q  G  S  S  H  D  E  I  D  F  E  F  L  G  N  L  S  G  E  P  Y  T  L  H  T  N  V  Y  T  Q  G  K  G  D  R  E  Q  Q  F  H  L  W  F  D  P  A  N  D  F  H  T  Y  S  I  L  W  N  P  Q  T  I  V :   F  S  V  D  N  V  P  I  R  E  F  K  N  M  E  N  I  G  V  A  F  P  K  S  Q  S  M  K  L  Y  S  S  L  W  N  A  D  E  W  A  T  R  G  G  L  I  K  T  D  W  A  Q  A  P  F  T  A  S  Y  R  N  F  N  A  N  I  C  N  N  N  N  N  N  N  D  S  C  K  Y  L  V  E  N  L  D  P  V  N  E  E  K  L  R  R  V  Q  Q  K  Y  M  I  Y  N  Y  C  T  D  N  K  R  F  P  Q  G  F  P  L  E  C  S  V  S  *  L  I  N  *  I  *  L  M  *  V  E  K  L  V  *  *  Y  *  *  P  P  L  V  L  S  L  S  S  L  L  Y  I  V  A  *  V  I  R  E  D  Y  Y  C  N  I  Y  M  F  M  F  L  I  M  E  V  E  S  V  Y  V  L  K  S </first_frame>
            <second_frame>  K  Y  L  L  L  H  L  I  I  F  Q  V  L  D  F  N  Q  R  R  N  I  Y  L  G  K  L  I  C  K  *  N  *  F  K  G  T  L  L  A  L  S  P  H  T  I :   C  H  H  K  D  Q  V  M  M  R  *  I  L  S  F  L  V  I  *  V  E  S  H  I  H  Y  I  Q  M  C  I  H  K  A  K  V  I  E  S  N  N  F  T  C  G  L  I  L  L  M  I  F  I  L  I  L  S  F  G  I  H  K  L  L   : Y  F  Q  W  T  M  Y  Q  *  G  S  L  K  I  W  K  T  L  E  L  H  F  Q  N  L  N  Q  *  N  F  I  Q  V  Y  G  M  L  M  N  G  P  Q  E  V  G  L  S  R  L  I  G  P  K  P  H  L  Q  P  L  I  E  I  S  M  P  I  F  A  I  I  I  I  I  I  M  I  L  A  N  I  W  *  K  I  W  I  L  *  M  K  K  N  *  E  G  C  N  K  N  T  *  Y  I  I  I  V  L  I  I  R  D  F  L  K  V  F  L  *  S  V  V  L  V  N  *  L  I  K  F  N  *  C  R  *  K  S  W  Y  N  N  I  N  S  L  L  *  F  C  L  F  Q  V  Y  Y  I  L  W  P  K  *  *  G  R  T  T  I  V  I  F  I  C  L  C  F  *  *  W  K  L  K  V  F  M  Y  L  K   </second_frame>
            <third_frame>   N  T  Y  S  Y  T  *  *  Y  F  R  F  W  I  S  I  K  E  G  I  F  I  W  E  N  *  Y  A  N  K  I  S  S  R  E  L  C  W  H  C  H  R  I  L   : F  V  I  T  R  I  K  S  *  *  D  R  F  *  V  S  W  *  F  K  W  R  A  I  Y  T  T  Y  K  C  V  Y  T  R  Q  R  *  *  R  A  T  I  S  L  V  V  *  S  C  *  *  F  S  Y  L  F  Y  P  L  E  S  T  N  Y  C  :  I  F  S  G  Q  C  T  N  K  G  V  *  K  Y  G  K  H  W  S  C  I  S  K  I  S  I  N  E  T  L  F  K  F  M  E  C  *  *  M  G  H  K  R  W  A  Y  Q  D  *  L  G  P  S  P  I  Y  S  L  L  *  K  F  Q  C  Q  Y  L  Q  *  *  *  *  *  *  *  F  L  Q  I  F  G  R  K  F  G  S  C  E  *  R  K  I  E  K  G  A  T  K  I  H  D  I  *  L  L  Y  *  *  *  E  I  S  S  R  F  S  S  R  V  *  C  *  L  I  N  *  L  N  L  I  N  V  G  R  K  V  G  I  I  I  L  I  A  S  S  S  F  V  S  F  K  F  I  I  Y  C  G  L  S  D  K  G  G  L  L  L  *  Y  L  Y  V  Y  V  F  N  N  G  S  *  K  C  L  C  T  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59719" stop="59853"/>
                    <exon start="59954" stop="60147"/>
                    <exon start="60872" stop="61241"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EILTLTLDNISGSGFQSKKEYLFGKIDMQIKLVQGNSAGTVTAYYLSSQGSSHDEIDFEFLGNLSGEPYTLHTNVYTQGKGDREQQFHLWFDPANDFHTYSILWNPQTIVFSVDNVPIREFKNMENIGVAFPKSQSMKLYSSLWNADEWATRGGLIKTDWAQAPFTASYRNFNANICNNNNNNNDSCKYLVENLDPVNEEKLRRVQQKYMIYNYCTDNKRFPQGFPLECSVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="63420" PGL_stop="66669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63420" e_stop="63595"/>
            <exon e_start="64403" e_stop="64541"/>
            <exon e_start="66268" e_stop="66669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.384" acc_prob="0.310" e_score="0.898"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="0.957"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.898">
            <gDNA_exon_boundary e_start="63420" e_stop="63595" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.384" acc_prob="0.310">
            <gDNA_intron_boundary i_start="63596" i_stop="64402" i_length="807"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="64403" e_stop="64541" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64542" i_stop="66267" i_length="1726"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="66268" e_stop="66669" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63420" stop="63595"/>
              <exon start="64403" stop="64541"/>
              <exon start="66268" stop="66669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63516" stop="63595"/>
              <exon start="64403" stop="64541"/>
              <exon start="66268" stop="66614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63516" stop="63595"/>
              <exon start="64403" stop="64541"/>
              <exon start="66268" stop="66515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63538" stop="63595"/>
              <exon start="64403" stop="64541"/>
              <exon start="66268" stop="66669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64463" stop="64541"/>
              <exon start="66268" stop="66584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTAAAATAACATAAAGATCATATGGATATTGTGAGAGTAGAGTTTTTGTTGAGGCTTTTGGCAATTTTGTTGTTGGTTTTGACTGCTTGTCTTGTTGGATTTGATTCTCAAACTAAAGTTGTTTTTTTAACTGTTCAAATAAAAGCAAACTTCAAATATTTGGGTGCATTGAG : TGTTTTGGTATGGATTGATGCTGCTGCTGCCATTTATAATGTACTTCAACTGCTGAGATGTTTTTTCATTGCTACTTCAAAGGTGGATATTAAACAAATTTCTCACAAGAATTATTGGTTCTTTTTCTTATTAGACCAG : GTAGTTGTGTACATTGTATTTGCAGCAAATTCAGCAGCAATTGAAGCATCAGCAATTGCATTAATTGGAATTAAAAGCTTACAATGGATGAAAATATGCAATAGATTTACTAGATTTTGTATCCAAATTGGAGCTGCTTTAATATTGGGCTATATTGCTGTTCTTATATTATTTCTAGTTTCATCAATTTCTGCTTTTCAATTATTTAGGTTATATTCACCTAAACATTTTCTTAAACTTAAAACAAAATTAATTGATGATTCTTATGTTGTTCATCAAAACGTGTTGCAGAACGATCTACAAAATAATTGATATCGATGTAGTTTGCTTCCTTAGTACATAAGTACTTTGTTATGTAAAAATAAATTTATGATGAATTAATTCGACTATGCTTTTATTTTT</gDNA_template>
            <first_frame> F  L  K  *  H  K  D  H  M  D  I  V  R  V  E  F  L  L  R  L  L  A  I  L  L  L  V  L  T  A  C  L  V  G  F  D  S  Q  T  K  V  V  F  L  T  V  Q  I  K  A  N  F  K  Y  L  G  A  L  S :   V  L  V  W  I  D  A  A  A  A  I  Y  N  V  L  Q  L  L  R  C  F  F  I  A  T  S  K  V  D  I  K  Q  I  S  H  K  N  Y  W  F  F  F  L  L  D  Q  :  V  V  V  Y  I  V  F  A  A  N  S  A  A  I  E  A  S  A  I  A  L  I  G  I  K  S  L  Q  W  M  K  I  C  N  R  F  T  R  F  C  I  Q  I  G  A  A  L  I  L  G  Y  I  A  V  L  I  L  F  L  V  S  S  I  S  A  F  Q  L  F  R  L  Y  S  P  K  H  F  L  K  L  K  T  K  L  I  D  D  S  Y  V  V  H  Q  N  V  L  Q  N  D  L  Q  N  N  *  Y  R  C  S  L  L  P  *  Y  I  S  T  L  L  C  K  N  K  F  M  M  N  *  F  D  Y  A  F  I  F </first_frame>
            <second_frame>  F  *  N  N  I  K  I  I  W  I  L  *  E  *  S  F  C  *  G  F  W  Q  F  C  C  W  F  *  L  L  V  L  L  D  L  I  L  K  L  K  L  F  F  *  L  F  K  *  K  Q  T  S  N  I  W  V  H  *   : V  F  W  Y  G  L  M  L  L  L  P  F  I  M  Y  F  N  C  *  D  V  F  S  L  L  L  Q  R  W  I  L  N  K  F  L  T  R  I  I  G  S  F  S  Y  *  T  R :   *  L  C  T  L  Y  L  Q  Q  I  Q  Q  Q  L  K  H  Q  Q  L  H  *  L  E  L  K  A  Y  N  G  *  K  Y  A  I  D  L  L  D  F  V  S  K  L  E  L  L  *  Y  W  A  I  L  L  F  L  Y  Y  F  *  F  H  Q  F  L  L  F  N  Y  L  G  Y  I  H  L  N  I  F  L  N  L  K  Q  N  *  L  M  I  L  M  L  F  I  K  T  C  C  R  T  I  Y  K  I  I  D  I  D  V  V  C  F  L  S  T  *  V  L  C  Y  V  K  I  N  L  *  *  I  N  S  T  M  L  L  F   </second_frame>
            <third_frame>   F  K  I  T  *  R  S  Y  G  Y  C  E  S  R  V  F  V  E  A  F  G  N  F  V  V  G  F  D  C  L  S  C  W  I  *  F  S  N  *  S  C  F  F  N  C  S  N  K  S  K  L  Q  I  F  G  C  I  E  :  C  F  G  M  D  *  C  C  C  C  H  L  *  C  T  S  T  A  E  M  F  F  H  C  Y  F  K  G  G  Y  *  T  N  F  S  Q  E  L  L  V  L  F  L  I  R  P   : G  S  C  V  H  C  I  C  S  K  F  S  S  N  *  S  I  S  N  C  I  N  W  N  *  K  L  T  M  D  E  N  M  Q  *  I  Y  *  I  L  Y  P  N  W  S  C  F  N  I  G  L  Y  C  C  S  Y  I  I  S  S  F  I  N  F  C  F  S  I  I  *  V  I  F  T  *  T  F  S  *  T  *  N  K  I  N  *  *  F  L  C  C  S  S  K  R  V  A  E  R  S  T  K  *  L  I  S  M  *  F  A  S  L  V  H  K  Y  F  V  M  *  K  *  I  Y  D  E  L  I  R  L  C  F  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63432" stop="63595"/>
                    <exon start="64403" stop="64541"/>
                    <exon start="66268" stop="66579"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKDHMDIVRVEFLLRLLAILLLVLTACLVGFDSQTKVVFLTVQIKANFKYLGALSVLVWIDAAAAIYNVLQLLRCFFIATSKVDIKQISHKNYWFFFLLDQVVVYIVFAANSAAIEASAIALIGIKSLQWMKICNRFTRFCIQIGAALILGYIAVLILFLVSSISAFQLFRLYSPKHFLKLKTKLIDDSYVVHQNVLQNDLQNN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 220 chains have been computed
$ 
$ memory statistics:
$ 144584 bytes spliced alignments in total
$ 69 spliced alignments have been stored
$ 2095 bytes was the average size of a spliced alignment
$ 13104 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2184 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 231 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 20:53:49
-->
