<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 02:22:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6855-2" ref_strand="+" ref_description="SGN-M6855-2 C2_At1g52980-2 [cosii_markers]">
      <seq>tggagtgtgtactacaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctagggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgtttaagaaaaaaaattctttctgttctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6257" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5957" g_stop="5634" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="458" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="588" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="746" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="848" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="849" r_stop="953" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="954" r_stop="1082" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1083" r_stop="1223" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1224" r_stop="1324" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1325" r_stop="1382" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="717" g_stop="204" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1383" r_stop="1896" r_length="514" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1897" polyA_stop="1912"/>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-M6855-2" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1896</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6855-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5957" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGATTGAAGCTTCTTTCTGTTCT</genome_strand>
        <mrna_strand>TGGAGTGTGTACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGAAAAAAAATTCTTTCTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6855-3" ref_strand="+" ref_description="SGN-M6855-3 C2_At1g52980-3 [cosii_markers]">
      <seq>cacatattgaaaagctaggttttagctctaacgcctcctcttctttgtggagtgtatactccaaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttctgatgtcgttgttcaggttcttgatgccagagacccctatggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctccaaggaatatccaactttggcatttcatgcaagtgtcaccaaatcctttggaaagggttctcttttgtcagtgctgagacagttttctcgactaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaagatcttcttgattgactgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaaccttcctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttgaaagagcttataagataaagaattgggttgacgagtatgactttcttcaacagctatgcaagttaacaggcaaacttctgaagggaggcgaacctgactataagactgctgccaagatggttctccatgattggcaaagaggcaaaattcctttctttgttccacctccaaagctggatgatgagcaaaatgaacttgtcgctgaggcagacacagccgtggataacgatcaggccacagctgctctcaaagctattgctgatgtcgtttcatcacaacaactgaaggaagttcctgttcaagaggaactatttagtaaggctgagctgttgggtgaaaactgaaatggacggatcatcttttctatatcattcttatatctttaagtttaggtccattgctttccccagtttttctagtcctagtagagattgatatgcgggtcgaaaatatagatatctcgtattttgttttaatgtttatttcgaattttgtcttatttacggaattgaattggtatgagcttaaatggaaatgattcataatgtttatctcaacttgtttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6306" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6006" g_stop="5634" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="505" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="635" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="793" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="895" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="896" r_stop="1000" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1001" r_stop="1129" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1130" r_stop="1270" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1271" r_stop="1371" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1372" r_stop="1429" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="717" g_stop="448" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1430" r_stop="1699" r_length="270" r_score="0.952"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="447" i_stop="398" i_length="50">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.19"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="397" g_stop="264" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1700" r_stop="1845" r_length="146" r_score="0.679"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1911" polyA_stop="1924"/>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-M6855-3" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>1835</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6855-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6006" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="448"/>
          <exon e_start="397" e_stop="264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATATTGAAAAAGCTAGGTTTTAGCTCTTAACGCCTCCTCTTCTTTGTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTA-T-ATC-GTT-T-T-T-A--C--A-ATCTTTTAG-TTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTA</genome_strand>
        <mrna_strand>CACATATTG-AAAAGCTAGGTTTTAGCTC-TAACGCCTCCTCTTCTTTGTGGAGTGTATACTCCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCCAAGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAATCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGACTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAAGATCTTCTTGATTGACTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTTCCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTGAAAGAGCTTATAAGATAAAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTTAACAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCGAACCTGACTATAAGACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAAAATTCCTTTCTTTGTTCCACCTCCAAAGCTGGATGATGAGCAAAATGAACTTGTCGCTGAGGCAGACACAGCCGTGGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGATGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAAGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTGAAATGGACGG..................................................ATCATCTTTTCTATATCATTCTTATATCTTTAAGTTTAGGTCCATTGCTTTCCCCAGTTTTTCTAGTCCTAGTAGAGATTGATATGCGGGTCGAAAATATAGATATCTCGTA-TTTTGTTTTAATGTTTATTTCGAATTTTGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6855" ref_strand="+" ref_description="SGN-M6855 C2_At1g52980 [cosii_markers]">
      <seq>ggacaaagtaaacgaatttggggcgaactttacaaagtcatagactcttctgatgttgttattcaggttcttgatgccagagatccctgtggtacaaggtgctaccatttggagaagcatttgagggaaaattgcaagcataaacatatggtccttttgctgaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctatccaaggaatatccaactctggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtactgagacagttttctcgactaaagagcgacaatcaagcaatctctgttggttttgtaggctatcccaatgttggcaagtcatcagttattaatacactgcgcacaaagaatgtgtgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacacttacaaagaggatcttcttgattgactgtcccggtgtagtttatcagaatcaggattccgaaacagatatagtcttgaaaggcgtggtacgggtgacaaacctgcatgatgcttctgaacacattggcgaagtgttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="4852" stop="1288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4552" g_stop="4487" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="168" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="273" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="402" r_length="129" r_score="0.953"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="543" r_length="141" r_score="0.950"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.944" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1640" g_stop="1588" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="596" r_length="53" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-M6855" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4552" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAA</genome_strand>
        <mrna_strand>GGACAAAGTAAACGAATTTGGGGCGAACTTTACAAAGTCATAGACTCTTCTGATGTTGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGATCCCTGTGGTACAAGGTGCTACCATTTGGAGAAGCATTTGAGGGAAAATTGCAAGCATAAACATATGGTCCTTTTGCTGAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTATCCAAGGAATATCCAACTCTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTACTGAGACAGTTTTCTCGACTAAAGAGCGACAATCAAGCAATCTCTGTTGGTTTTGTAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACACTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTTACAAAGAGGATCTTCTTGATTGACTGTCCCGGTGTAGTTTATCAGAATCAGGATTCCGAAACAGATATAGTCTTGAAAGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGGTGACAAACCTGCATGATGCTTCTGAACACATTGGCGAAGTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M175-F" ref_strand="+" ref_description="SGN-M175-F TG20-F [rflp_markers_forward]">
      <seq>ctaggacttcatcttttgttattacttactgtaaaaagttcttggcagatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcgcaagtttcagcttctcataatcatgctgcttttgtcacagggtctggacaggtttggcaatcggcgtatattatcaactactctcatttttattacagtaatttaccttttacgtgcactttgttttttgcatgcatgatgtggaaatcctcgttctgttgaggagtaaagtaaagaaggtgaaagaggaagaatgaaaatggagacaagcaatccaatcacattttcgtttttttgggaaattattttaggagaggttcctttgggagactgatactaatattgttgaaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="15872" stop="16973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16172" g_stop="16673" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-M175-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M175-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16172" e_stop="16673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATA</genome_strand>
        <mrna_strand>CTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6006" PGL_stop="204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6006" e_stop="5634"/>
            <exon e_start="5289" e_stop="5156"/>
            <exon e_start="4890" e_stop="4761"/>
            <exon e_start="4644" e_stop="4487"/>
            <exon e_start="3990" e_stop="3889"/>
            <exon e_start="3728" e_stop="3624"/>
            <exon e_start="3462" e_stop="3334"/>
            <exon e_start="2743" e_stop="2603"/>
            <exon e_start="1640" e_stop="1540"/>
            <exon e_start="1263" e_stop="1206"/>
            <exon e_start="717" e_stop="448"/>
            <exon e_start="397" e_stop="264"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="0.981"/>
          <exon-intron don_prob="0.993" acc_prob="0.976" e_score="0.993"/>
          <exon-intron don_prob="0.886" acc_prob="0.997" e_score="0.977"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.981"/>
          <exon-intron don_prob="0.927" acc_prob="0.990" e_score="0.990"/>
          <exon-intron don_prob="0.903" acc_prob="0.979" e_score="0.971"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="0.992"/>
          <exon-intron don_prob="0.978" acc_prob="0.944" e_score="0.979"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="0.970"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.948"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.952"/>
          <exon-only e_score="0.679"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="6006" e_stop="5634" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="5289" e_stop="5156" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.976">
            <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="4890" e_stop="4761" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.886" acc_prob="0.997">
            <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="4644" e_stop="4487" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="3990" e_stop="3889" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.927" acc_prob="0.990">
            <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="3728" e_stop="3624" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.903" acc_prob="0.979">
            <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="3462" e_stop="3334" e_length="129"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590"/>
          </intron>
          <exon e_serial="8" e_score="0.979">
            <gDNA_exon_boundary e_start="2743" e_stop="2603" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.944">
            <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962"/>
          </intron>
          <exon e_serial="9" e_score="0.970">
            <gDNA_exon_boundary e_start="1640" e_stop="1540" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276"/>
          </intron>
          <exon e_serial="10" e_score="0.948">
            <gDNA_exon_boundary e_start="1263" e_stop="1206" e_length="58"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488"/>
          </intron>
          <exon e_serial="11" e_score="0.952">
            <gDNA_exon_boundary e_start="717" e_stop="448" e_length="270"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="447" i_stop="398" i_length="50"/>
          </intron>
          <exon e_serial="12" e_score="0.679">
            <gDNA_exon_boundary e_start="397" e_stop="264" e_length="134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6006" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="448"/>
              <exon start="397" stop="264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6855-3" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4552" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATATTGAAAAAGCTAGGTTTTAGCTCTTAACGCCTCCTCTTCTTTGTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG : GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG : CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG : ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG : GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG : TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG : GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT : GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG : GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG : GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG : GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGG : TATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTA</gDNA_template>
            <first_frame> H  I  L  K  K  L  G  F  S  S  *  R  L  L  F  F  V  E  C  I  L  Q  T  G  L  D  D  *  G  I  N  V  N  R  R  F  L  N  P  S  F  V  L  R  I  S  E  M  A  K  K  K  E  R  S  V  N  V  S  G  K  P  K  H  S  L  D  S  N  R  D  V  S  A  A  K  N  G  R  S  A  A  T  V  R  R  L  K  M  Y  N  T  R  P  K  R  N  P  Q  G  H  I  I  K  H  D  L  Q  S  K  E  L  P  S  T  R  I  Q  P  D  R  R  W  F   : G  N  T  R  V  V  N  Q  K  E  L  E  F  F  R  E  E  L  Q  T  R  L  S  S  N  Y  N  V  I  L  K  E  R  K  L  P  M  S  L  L  N  D  H  Q  K  :  Q  V  K  V  H  L  L  D  N  E  P  F  A  D  A  F  G  P  K  T  K  R  K  R  P  K  L  M  A  L  D  Y  E  A  L  V  K  K  V  D  V  S  H   : D  D  F  E  D  K  H  G  A  S  T  S  M  D  E  N  A  D  G  F  R  D  L  V  R  H  T  M  F  E  K  G  Q  S  K  R  I  W  S  E  L  Y  K  V  I  D  S  S  D  V  V  I  Q  :  V  L  D  A  R  D  P  C  G  T  R  C  Y  H  L  E  K  H  L  K  E  N  C  K  H  K  H  M  V  L  L  L  N  K  :  C  D  L  V  P  A  W  A  T  K  G  W  L  R  V  L  S  R  E  Y  P  T  L  A  F  H  A  S  V  T  K  S  F  G  K  :  G  S  L  L  S  V  L  R  Q  F  S  R  L  K  S  D  K  Q  A  I  S  V  G  F  I  G  Y  P  N  V  G  K  S  S  V  I  N  T  L  R  T  K  N  :  V  C  K  V  A  P  I  P  G  E  T  K  V  W  Q  Y  I  T  L  T  K  R  I  F  L  I  D  C  P  G  V  V  Y  Q  N  H  D  S  E  T  D  I  V  L  K  G  V  :  V  R  V  T  N  L  P  D  A  S  E  H  I  S  E  V  L  N  R  V  K  K  E  H  L  K  R  A  Y  K  I  E  N  W :   V  D  E  Y  D  F  L  Q  Q  L  C  K  S  S  G  K  L  L  K  :  G  G  E  P  D  Y  N  T  A  A  K  M  V  L  H  D  W  Q  R  G  N  I  P  F  F  V  P  P  P  K  L  D  D  E  P  N  E  L  V  A  E  A  D  T  A  V  D  N  D  Q  A  T  A  A  L  K  A  I  A  D  V  V  S  S  Q  Q  L  K  E  V  P  V  Q  E  E  L  F  S  K  A  E  L  L  G  E  N  *  Y  G  R  :  Y  R  F  Y  N  L  L  V  G  S  I  A  F  P  E  F  S  S  P  R  R  D  *  Y  T  G  R  K  Y  R  Y  L  V  F  L  F  *  R  L  F  R  I  E  C   </first_frame>
            <second_frame>  T  Y  *  K  S  *  V  L  A  L  N  A  S  S  S  L  W  S  V  Y  Y  K  P  A  *  T  T  E  V  L  T  L  I  A  D  S  *  T  L  V  L  F  F  V  Y  R  R  W  R  R  R  K  R  G  R  *  M  Y  R  E  S  Q  S  I  H  W  T  P  I  G  M  S  A  Q  P  K  M  A  V  A  P  L  L  C  G  G  S  R  C  T  I  P  G  R  S  V  I  L  R  V  T  *  L  S  T  T  Y  N  Q  R  S  C  H  Q  Q  G  Y  N  Q  I  V  V  G  S  :  V  I  L  G  W  S  T  R  R  N  W  S  F  L  E  K  S  S  K  L  G  F  P  V  T  T  M  L  Y  *  K  K  G  S  C  P  C  P  F  *  M  I  I  R  S :   K  *  K  F  I  C  L  T  M  S  H  L  L  M  L  L  D  Q  K  Q  R  G  N  A  P  N  L  W  H  *  I  M  K  L  *  *  R  R  L  M  C  L  M  :  M  I  L  K  T  N  M  V  L  A  P  P  W  M  K  M  L  M  D  S  E  I  L  L  G  T  Q  C  L  R  K  D  K  V  N  E  F  G  V  S  S  T  K  S  *  T  L  L  M  S  L  F  R :   F  L  M  P  E  T  P  V  V  Q  G  A  T  I  W  R  N  I  *  K  K  I  A  S  T  N  I  W  S  F  C  L  I  S :   V  I  W  S  L  L  G  Q  Q  R  D  G  L  E  C  S  L  G  N  I  Q  L  W  H  F  M  Q  V  S  P  S  P  L  E  R :   V  L  F  C  Q  C  *  D  S  F  L  V  *  R  A  I  S  K  Q  S  L  L  V  L  *  A  I  P  M  L  A  S  H  Q  L  L  I  H  C  A  Q  R  M :   F  A  R  W  L  L  S  Q  E  R  L  K  C  G  S  T  L  H  S  Q  R  G  Y  S  *  L  I  V  L  V  *  F  I  R  I  M  I  P  K  Q  I  *  S  *  R  A  W :   Y  E  *  Q  T  Y  L  M  L  L  N  T  L  A  K  C  *  I  A  L  R  R  S  I  L  K  E  L  I  R  *  R  I   : G  L  T  S  M  T  F  F  N  S  Y  A  S  L  Q  A  N  F  *  R :   E  V  N  L  T  T  I  L  L  P  R  W  F  S  M  I  G  K  E  A  T  F  L  S  L  F  H  L  Q  S  L  M  M  S  Q  M  N  L  S  Q  R  Q  T  Q  P  L  I  T  I  R  P  Q  L  L  S  K  L  L  L  T  S  F  H  H  N  N  *  R  K  F  L  F  R  R  N  Y  L  V  R  L  S  C  W  V  K  T  N  M  G  G :   I  V  F  T  I  F  *  L  G  P  L  H  S  Q  S  F  L  V  L  E  E  I  D  I  L  V  E  N  I  D  T  S  Y  F  C  F  N  V  Y  F  E  L  S  V  </second_frame>
            <third_frame>   H  I  E  K  A  R  F  *  L  L  T  P  P  L  L  C  G  V  Y  T  T  N  R  P  R  R  L  R  Y  *  R  *  S  P  I  P  K  P  *  F  C  S  S  Y  I  G  D  G  E  E  E  R  E  V  G  E  C  I  G  K  A  K  A  F  I  G  L  Q  *  G  C  Q  R  S  Q  K  W  P  *  R  R  Y  C  A  A  A  Q  D  V  Q  Y  Q  A  E  A  *  S  S  G  S  H  N  *  A  R  L  T  I  K  G  A  A  I  N  K  D  T  T  R  S  S  L  V  R :   *  Y  S  G  G  Q  P  E  G  T  G  V  F  *  R  R  A  P  N  S  A  F  Q  *  L  Q  C  Y  I  K  R  K  E  V  A  H  V  P  F  K  *  S  S  E   : A  S  K  S  S  S  A  *  Q  *  A  I  C  *  C  F  W  T  K  N  K  E  E  T  P  Q  T  Y  G  I  R  L  *  S  F  S  E  E  G  *  C  V  S  * :   *  F  *  R  Q  T  W  C  *  H  L  H  G  *  K  C  *  W  I  Q  R  S  C  *  A  H  N  V  *  E  R  T  K  *  T  N  L  E  *  A  L  Q  S  H  R  L  F  *  C  R  Y  S   : G  S  *  C  Q  R  P  L  W  Y  K  V  L  P  F  G  E  T  F  E  R  K  L  Q  A  Q  T  Y  G  P  F  A  *  *   : V  *  F  G  P  C  L  G  N  K  G  M  A  *  S  A  L  *  G  I  S  N  F  G  I  S  C  K  C  H  Q  V  L  W  K   : G  F  S  F  V  S  A  E  T  V  F  S  S  K  E  R  *  A  S  N  L  C  W  F  Y  R  L  S  Q  C  W  Q  V  I  S  Y  *  Y  I  A  H  K  E   : C  L  Q  G  G  S  Y  P  R  R  D  *  S  V  A  V  H  Y  T  H  K  E  D  I  L  D  *  L  S  W  C  S  L  S  E  S  *  F  R  N  R  Y  S  L  E  G  R   : G  T  S  D  K  P  T  *  C  F  *  T  H  *  R  S  V  E  S  R  *  E  G  A  S  *  K  S  L  *  D  R  E  L  :  G  *  R  V  *  L  S  S  T  A  M  Q  V  F  R  Q  T  S  E   : G  R  *  T  *  L  Q  Y  C  C  Q  D  G  S  P  *  L  A  K  R  Q  H  S  F  L  C  S  T  S  K  A  *  *  *  A  K  *  T  C  R  R  G  R  H  S  R  *  *  R  S  G  H  S  C  S  Q  S  Y  C  *  R  R  F  I  T  T  T  E  G  S  S  C  S  G  G  T  I  *  *  G  *  A  V  G  *  K  L  I  W  A   : V  S  F  L  Q  S  F  S  W  V  H  C  I  P  R  V  F  *  S  *  K  R  L  I  Y  W  S  K  I  *  I  P  R  I  F  V  L  T  F  I  S  N  *  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0103N02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5922" stop="5634"/>
                    <exon start="5289" stop="5156"/>
                    <exon start="4890" stop="4761"/>
                    <exon start="4644" stop="4487"/>
                    <exon start="3990" stop="3889"/>
                    <exon start="3728" stop="3624"/>
                    <exon start="3462" stop="3334"/>
                    <exon start="2743" stop="2603"/>
                    <exon start="1640" stop="1540"/>
                    <exon start="1263" stop="1206"/>
                    <exon start="717" stop="457"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1605</number_coding_nucleotides>
                  <number_encoded_amino_acids>535</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GINVNRRFLNPSFVLRISEMAKKKERSVNVSGKPKHSLDSNRDVSAAKNGRSAATVRRLKMYNTRPKRNPQGHIIKHDLQSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQTRLSSNYNVILKERKLPMSLLNDHQKQVKVHLLDNEPFADAFGPKTKRKRPKLMALDYEALVKKVDVSHDDFEDKHGASTSMDENADGFRDLVRHTMFEKGQSKRIWSELYKVIDSSDVVIQVLDARDPCGTRCYHLEKHLKENCKHKHMVLLLNKCDLVPAWATKGWLRVLSREYPTLAFHASVTKSFGKGSLLSVLRQFSRLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNHDSETDIVLKGVVRVTNLPDASEHISEVLNRVKKEHLKRAYKIENWVDEYDFLQQLCKSSGKLLKGGEPDYNTAAKMVLHDWQRGNIPFFVPPPKLDDEPNELVAEADTAVDNDQATAALKAIADVVSSQQLKEVPVQEELFSKAELLGEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5957" e_stop="5634"/>
            <exon e_start="5289" e_stop="5156"/>
            <exon e_start="4890" e_stop="4761"/>
            <exon e_start="4644" e_stop="4487"/>
            <exon e_start="3990" e_stop="3889"/>
            <exon e_start="3728" e_stop="3624"/>
            <exon e_start="3462" e_stop="3334"/>
            <exon e_start="2743" e_stop="2603"/>
            <exon e_start="1640" e_stop="1540"/>
            <exon e_start="1263" e_stop="1206"/>
            <exon e_start="717" e_stop="204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="0.993" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="5957" e_stop="5634" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5289" e_stop="5156" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.976">
            <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4890" e_stop="4761" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.886" acc_prob="0.997">
            <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4644" e_stop="4487" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3990" e_stop="3889" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.927" acc_prob="0.990">
            <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3728" e_stop="3624" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.903" acc_prob="0.979">
            <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="3462" e_stop="3334" e_length="129"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="2743" e_stop="2603" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.944">
            <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="1640" e_stop="1540" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="1263" e_stop="1206" e_length="58"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488"/>
          </intron>
          <exon e_serial="11" e_score="0.990">
            <gDNA_exon_boundary e_start="717" e_stop="204" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5957" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6855-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4552" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG : GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG : CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG : ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG : GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG : TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG : GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT : GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG : GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG : GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG : GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGATTGAAGCTTCTTTCTGTTCT</gDNA_template>
            <first_frame> W  S  V  Y  Y  K  P  A  *  T  T  E  V  L  T  L  I  A  D  S  *  T  L  V  L  F  F  V  Y  R  R  W  R  R  R  K  R  G  R  *  M  Y  R  E  S  Q  S  I  H  W  T  P  I  G  M  S  A  Q  P  K  M  A  V  A  P  L  L  C  G  G  S  R  C  T  I  P  G  R  S  V  I  L  R  V  T  *  L  S  T  T  Y  N  Q  R  S  C  H  Q  Q  G  Y  N  Q  I  V  V  G  S  :  V  I  L  G  W  S  T  R  R  N  W  S  F  L  E  K  S  S  K  L  G  F  P  V  T  T  M  L  Y  *  K  K  G  S  C  P  C  P  F  *  M  I  I  R  S :   K  *  K  F  I  C  L  T  M  S  H  L  L  M  L  L  D  Q  K  Q  R  G  N  A  P  N  L  W  H  *  I  M  K  L  *  *  R  R  L  M  C  L  M  :  M  I  L  K  T  N  M  V  L  A  P  P  W  M  K  M  L  M  D  S  E  I  L  L  G  T  Q  C  L  R  K  D  K  V  N  E  F  G  V  S  S  T  K  S  *  T  L  L  M  S  L  F  R :   F  L  M  P  E  T  P  V  V  Q  G  A  T  I  W  R  N  I  *  K  K  I  A  S  T  N  I  W  S  F  C  L  I  S :   V  I  W  S  L  L  G  Q  Q  R  D  G  L  E  C  S  L  G  N  I  Q  L  W  H  F  M  Q  V  S  P  S  P  L  E  R :   V  L  F  C  Q  C  *  D  S  F  L  V  *  R  A  I  S  K  Q  S  L  L  V  L  *  A  I  P  M  L  A  S  H  Q  L  L  I  H  C  A  Q  R  M :   F  A  R  W  L  L  S  Q  E  R  L  K  C  G  S  T  L  H  S  Q  R  G  Y  S  *  L  I  V  L  V  *  F  I  R  I  M  I  P  K  Q  I  *  S  *  R  A  W :   Y  E  *  Q  T  Y  L  M  L  L  N  T  L  A  K  C  *  I  A  L  R  R  S  I  L  K  E  L  I  R  *  R  I   : G  L  T  S  M  T  F  F  N  S  Y  A  S  L  Q  A  N  F  *  R :   E  V  N  L  T  T  I  L  L  P  R  W  F  S  M  I  G  K  E  A  T  F  L  S  L  F  H  L  Q  S  L  M  M  S  Q  M  N  L  S  Q  R  Q  T  Q  P  L  I  T  I  R  P  Q  L  L  S  K  L  L  L  T  S  F  H  H  N  N  *  R  K  F  L  F  R  R  N  Y  L  V  R  L  S  C  W  V  K  T  N  M  G  G  L  S  F  R  L  A  T  S  T  V  L  E  S  S  F  R  I  S  F  L  Q  S  F  S  W  V  H  C  I  P  R  V  F  *  S  *  K  R  L  I  Y  W  S  K  I  *  I  P  R  I  F  V  L  T  F  I  S  N  *  V  L  M  E  M  I  N  I  I  *  L  N  L  F  K  I  E  A  S  F  C  S </first_frame>
            <second_frame>  G  V  Y  T  T  N  R  P  R  R  L  R  Y  *  R  *  S  P  I  P  K  P  *  F  C  S  S  Y  I  G  D  G  E  E  E  R  E  V  G  E  C  I  G  K  A  K  A  F  I  G  L  Q  *  G  C  Q  R  S  Q  K  W  P  *  R  R  Y  C  A  A  A  Q  D  V  Q  Y  Q  A  E  A  *  S  S  G  S  H  N  *  A  R  L  T  I  K  G  A  A  I  N  K  D  T  T  R  S  S  L  V  R :   *  Y  S  G  G  Q  P  E  G  T  G  V  F  *  R  R  A  P  N  S  A  F  Q  *  L  Q  C  Y  I  K  R  K  E  V  A  H  V  P  F  K  *  S  S  E   : A  S  K  S  S  S  A  *  Q  *  A  I  C  *  C  F  W  T  K  N  K  E  E  T  P  Q  T  Y  G  I  R  L  *  S  F  S  E  E  G  *  C  V  S  * :   *  F  *  R  Q  T  W  C  *  H  L  H  G  *  K  C  *  W  I  Q  R  S  C  *  A  H  N  V  *  E  R  T  K  *  T  N  L  E  *  A  L  Q  S  H  R  L  F  *  C  R  Y  S   : G  S  *  C  Q  R  P  L  W  Y  K  V  L  P  F  G  E  T  F  E  R  K  L  Q  A  Q  T  Y  G  P  F  A  *  *   : V  *  F  G  P  C  L  G  N  K  G  M  A  *  S  A  L  *  G  I  S  N  F  G  I  S  C  K  C  H  Q  V  L  W  K   : G  F  S  F  V  S  A  E  T  V  F  S  S  K  E  R  *  A  S  N  L  C  W  F  Y  R  L  S  Q  C  W  Q  V  I  S  Y  *  Y  I  A  H  K  E   : C  L  Q  G  G  S  Y  P  R  R  D  *  S  V  A  V  H  Y  T  H  K  E  D  I  L  D  *  L  S  W  C  S  L  S  E  S  *  F  R  N  R  Y  S  L  E  G  R   : G  T  S  D  K  P  T  *  C  F  *  T  H  *  R  S  V  E  S  R  *  E  G  A  S  *  K  S  L  *  D  R  E  L  :  G  *  R  V  *  L  S  S  T  A  M  Q  V  F  R  Q  T  S  E   : G  R  *  T  *  L  Q  Y  C  C  Q  D  G  S  P  *  L  A  K  R  Q  H  S  F  L  C  S  T  S  K  A  *  *  *  A  K  *  T  C  R  R  G  R  H  S  R  *  *  R  S  G  H  S  C  S  Q  S  Y  C  *  R  R  F  I  T  T  T  E  G  S  S  C  S  G  G  T  I  *  *  G  *  A  V  G  *  K  L  I  W  A  D  Y  P  L  D  L  Q  H  P  Q  F  W  N  R  V  F  V  Y  R  F  Y  N  L  L  V  G  S  I  A  F  P  E  F  S  S  P  R  R  D  *  Y  T  G  R  K  Y  R  Y  L  V  F  L  F  *  R  L  F  R  I  E  C  *  W  K  *  L  I  S  S  S  S  T  C  L  R  L  K  L  L  S  V   </second_frame>
            <third_frame>   E  C  I  L  Q  T  G  L  D  D  *  G  I  N  V  N  R  R  F  L  N  P  S  F  V  L  R  I  S  E  M  A  K  K  K  E  R  S  V  N  V  S  G  K  P  K  H  S  L  D  S  N  R  D  V  S  A  A  K  N  G  R  S  A  A  T  V  R  R  L  K  M  Y  N  T  R  P  K  R  N  P  Q  G  H  I  I  K  H  D  L  Q  S  K  E  L  P  S  T  R  I  Q  P  D  R  R  W  F   : G  N  T  R  V  V  N  Q  K  E  L  E  F  F  R  E  E  L  Q  T  R  L  S  S  N  Y  N  V  I  L  K  E  R  K  L  P  M  S  L  L  N  D  H  Q  K  :  Q  V  K  V  H  L  L  D  N  E  P  F  A  D  A  F  G  P  K  T  K  R  K  R  P  K  L  M  A  L  D  Y  E  A  L  V  K  K  V  D  V  S  H   : D  D  F  E  D  K  H  G  A  S  T  S  M  D  E  N  A  D  G  F  R  D  L  V  R  H  T  M  F  E  K  G  Q  S  K  R  I  W  S  E  L  Y  K  V  I  D  S  S  D  V  V  I  Q  :  V  L  D  A  R  D  P  C  G  T  R  C  Y  H  L  E  K  H  L  K  E  N  C  K  H  K  H  M  V  L  L  L  N  K  :  C  D  L  V  P  A  W  A  T  K  G  W  L  R  V  L  S  R  E  Y  P  T  L  A  F  H  A  S  V  T  K  S  F  G  K  :  G  S  L  L  S  V  L  R  Q  F  S  R  L  K  S  D  K  Q  A  I  S  V  G  F  I  G  Y  P  N  V  G  K  S  S  V  I  N  T  L  R  T  K  N  :  V  C  K  V  A  P  I  P  G  E  T  K  V  W  Q  Y  I  T  L  T  K  R  I  F  L  I  D  C  P  G  V  V  Y  Q  N  H  D  S  E  T  D  I  V  L  K  G  V  :  V  R  V  T  N  L  P  D  A  S  E  H  I  S  E  V  L  N  R  V  K  K  E  H  L  K  R  A  Y  K  I  E  N  W :   V  D  E  Y  D  F  L  Q  Q  L  C  K  S  S  G  K  L  L  K  :  G  G  E  P  D  Y  N  T  A  A  K  M  V  L  H  D  W  Q  R  G  N  I  P  F  F  V  P  P  P  K  L  D  D  E  P  N  E  L  V  A  E  A  D  T  A  V  D  N  D  Q  A  T  A  A  L  K  A  I  A  D  V  V  S  S  Q  Q  L  K  E  V  P  V  Q  E  E  L  F  S  K  A  E  L  L  G  E  N  *  Y  G  R  I  I  L  *  T  C  N  I  H  S  S  G  I  E  F  S  Y  I  V  F  T  I  F  *  L  G  P  L  H  S  Q  S  F  L  V  L  E  E  I  D  I  L  V  E  N  I  D  T  S  Y  F  C  F  N  V  Y  F  E  L  S  V  N  G  N  D  *  Y  H  L  A  Q  L  V  *  D  *  S  F  F  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0103N02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5922" stop="5634"/>
                    <exon start="5289" stop="5156"/>
                    <exon start="4890" stop="4761"/>
                    <exon start="4644" stop="4487"/>
                    <exon start="3990" stop="3889"/>
                    <exon start="3728" stop="3624"/>
                    <exon start="3462" stop="3334"/>
                    <exon start="2743" stop="2603"/>
                    <exon start="1640" stop="1540"/>
                    <exon start="1263" stop="1206"/>
                    <exon start="717" stop="457"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1605</number_coding_nucleotides>
                  <number_encoded_amino_acids>535</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GINVNRRFLNPSFVLRISEMAKKKERSVNVSGKPKHSLDSNRDVSAAKNGRSAATVRRLKMYNTRPKRNPQGHIIKHDLQSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQTRLSSNYNVILKERKLPMSLLNDHQKQVKVHLLDNEPFADAFGPKTKRKRPKLMALDYEALVKKVDVSHDDFEDKHGASTSMDENADGFRDLVRHTMFEKGQSKRIWSELYKVIDSSDVVIQVLDARDPCGTRCYHLEKHLKENCKHKHMVLLLNKCDLVPAWATKGWLRVLSREYPTLAFHASVTKSFGKGSLLSVLRQFSRLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNHDSETDIVLKGVVRVTNLPDASEHISEVLNRVKKEHLKRAYKIENWVDEYDFLQQLCKSSGKLLKGGEPDYNTAAKMVLHDWQRGNIPFFVPPPKLDDEPNELVAEADTAVDNDQATAALKAIADVVSSQQLKEVPVQEELFSKAELLGEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="16172" PGL_stop="16673"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16172" e_stop="16673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16172" e_stop="16673" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16172" stop="16673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M175-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATA</gDNA_template>
            <first_frame> L  G  L  H  L  L  L  L  L  T  V  K  S  S  W  Q  M  Q  I  R  S  G  R  Y  H  T  L  L  I  N  D  S  A  A  Y  S  C  G  S  S  L  C  G  V  L  G  H  G  P  E  T  T  Q  C  V  E  F  T  R  I  S  F  P  V  P  V  Q  V  A  Q  V  S  A  S  H  N  H  A  A  F  V  T  G  S  G  Q  V  W  Q  S  A  Y  I  I  N  Y  S  H  F  Y  Y  S  N  L  P  F  T  C  T  L  F  F  A  C  M  M  W  K  S  S  F  C  *  G  V  K  *  R  R  *  K  R  K  N  E  N  G  D  K  Q  S  N  H  I  F  V  F  L  G  N  Y  F  R  R  G  S  F  G  R  L  I  L  I  L  L  K  Y  </first_frame>
            <second_frame>  *  D  F  I  F  C  Y  Y  L  L  *  K  V  L  G  R  C  K  *  G  V  A  G  I  T  H  C  *  S  M  I  Q  Q  H  T  L  V  V  P  V  Y  A  A  S  L  V  M  G  L  K  Q  L  S  V  W  N  L  L  E  L  A  F  L  F  P  Y  K  L  R  K  F  Q  L  L  I  I  M  L  L  L  S  Q  G  L  D  R  F  G  N  R  R  I  L  S  T  T  L  I  F  I  T  V  I  Y  L  L  R  A  L  C  F  L  H  A  *  C  G  N  P  R  S  V  E  E  *  S  K  E  G  E  R  G  R  M  K  M  E  T  S  N  P  I  T  F  S  F  F  W  E  I  I  L  G  E  V  P  L  G  D  *  Y  *  Y  C  *  N  I </second_frame>
            <third_frame>   R  T  S  S  F  V  I  T  Y  C  K  K  F  L  A  D  A  N  K  E  W  Q  V  S  H  T  A  N  Q  *  F  S  S  I  L  L  W  F  Q  F  M  R  R  P  W  S  W  A  *  N  N  S  V  C  G  I  Y  S  N  *  L  S  C  S  R  T  S  C  A  S  F  S  F  S  *  S  C  C  F  C  H  R  V  W  T  G  L  A  I  G  V  Y  Y  Q  L  L  S  F  L  L  Q  *  F  T  F  Y  V  H  F  V  F  C  M  H  D  V  E  I  L  V  L  L  R  S  K  V  K  K  V  K  E  E  E  *  K  W  R  Q  A  I  Q  S  H  F  R  F  F  G  K  L  F  *  E  R  F  L  W  E  T  D  T  N  I  V  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0103N02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16172" stop="16540"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGLHLLLLLTVKSSWQMQIRSGRYHTLLINDSAAYSCGSSLCGVLGHGPETTQCVEFTRISFPVPVQVAQVSASHNHAAFVTGSGQVWQSAYIINYSHFYYSNLPFTCTLFFACMMWKSSFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 52 chains have been computed
$ 
$ memory statistics:
$ 9664 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2416 bytes was the average size of a spliced alignment
$ 7464 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3732 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 52 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 02:22:17
-->
