<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 02:19:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356339" ref_strand="+" ref_description="SGN-E356339 [cTOS-20-I24]">
      <seq>ggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgtttaagattgaagcttctttctgttctannnnaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="968" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="668" g_stop="198" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="486"/>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E356339" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="668" e_stop="198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGATTGAAGCTTCTTTCTGTTCTATACGA</genome_strand>
        <mrna_strand>GGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGATTGAAGCTTCTTTCTGTTCTANNNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355006" ref_strand="+" ref_description="SGN-E355006 [cTOS-19-N1]">
      <seq>tttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="949" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="649" g_stop="217" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E355006" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="649" e_stop="217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGATTGAAGC</genome_strand>
        <mrna_strand>TTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262241" ref_strand="-" ref_description="SGN-E262241 [cLEG-56-A8]">
      <seq>gaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctaccntgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgtttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="2981" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2681" g_stop="2603" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="181" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="239" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="717" g_stop="225" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="732" r_length="493" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="748"/>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E262241" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262241" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2681" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACC-TGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAG</genome_strand>
        <mrna_strand>GAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCNTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263600" ref_strand="-" ref_description="SGN-E263600 [cLEG-60-B24]">
      <seq>tgaagggcgtggtacgagtgacaaacctaccctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgtttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="1941" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="113" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="171" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="717" g_stop="225" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="664" r_length="493" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="680"/>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E263600" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263600" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACGAGTGACAAACCTA-CCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAG</genome_strand>
        <mrna_strand>GTACGAGTGACAAACCTACCCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693480" ref_strand="+" ref_description="SGN-E693480 [LH_Ea01G22](-)">
      <seq>aaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattagtgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggcgaacctgactacaataccgctgccaagatggttctccatgattggcaaagaggcaatattcctttctttgttccacctccaaagctggatgatgagccaaatgaacttgtcgctgaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctattgggtgaaaattaatatggacggattatccttttagacttgcaacatccacagttctggaatggagttttcgtatatcgtttttccatctataagttgggtccattgcattcccagagttttctagtcccagaagagattgatatgctggtcgaaaatatagatacctcgtattttattttaacgtttatttcgaattgagcgttaatggaaatgattaatatcatccatctcaacttattggtattttatacgagctacacgagattttccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="2984" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2684" g_stop="2603" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="183" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="241" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="717" g_stop="232" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="726" r_length="485" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="761" polyA_stop="774"/>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E693480" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2684" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCC-TTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTT</genome_strand>
        <mrna_strand>AAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGTGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCGAACCTGACTACAATACCGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAATATTCCTTTCTTTGTTCCACCTCCAAAGCTGGATGATGAGCCAAATGAACTTGTCGCTGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTATTGGGTGAAAATTAATATGGACGGATTATCCTTTTAGACTTGCAACATCCACAGTTCTGGAATGGAGTTTTCGTATATCGTTTTT-CCATCTATAAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCCAGAAGAGATTGATATGCTGGTCGAAAATATAGATACCTCGTA-TTTTATTTTAACGTTTATTTCGAATTGAGCGTTAATGGAAATGATTAATATCATCCATCTCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692933" ref_strand="-" ref_description="SGN-E692933 [LH_Ea10A03]">
      <seq>gaacacattagtgaagggttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacaggtatgcaagtattcaggcaaatttctgaagggaggcgaacctgactacaataccgctgccaagatggttctccatgattggcaaagaggcaatattcctttctttgttccacctccaaagctggatgatgagccaaatgaacttgtcgttgaggcagacacagccgttgataacgatcaggccacagctgctctcaaagccattgcggacgtggtttcaccaccacacctgaaggaagttcctgttcaggaggacctatttagtaagggtgagctattgggtgaaaattaatatggacggattatccttttagccttgcaacatccccagttctggaatcgagttttcgcatatcgtttttacatctataagttgggtccattgcattcccagagttttctagtcccagaagagattgatatggtggtcgaaaatatagatacctcgtattttattttaacgtttatttagaattgaccgttaatggaaatgattaatatcatccatctcaccttgttcctattttacacgagctccactaaatgtggcccacaaaaaaaaaataaaaaaatcgagactattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="1910" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1610" g_stop="1540" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="129" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="717" g_stop="232" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="614" r_length="485" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="662"/>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E692933" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692933" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1610" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCC-TTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTT</genome_strand>
        <mrna_strand>GAACACATTAGTGAAGGGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGGTATGCAAGTATTCAGGCAAATTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCGAACCTGACTACAATACCGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAATATTCCTTTCTTTGTTCCACCTCCAAAGCTGGATGATGAGCCAAATGAACTTGTCGTTGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCCATTGCGGACGTGGTTTCACCACCACACCTGAAGGAAGTTCCTGTTCAGGAGGACCTATTTAGTAAGGGTGAGCTATTGGGTGAAAATTAATATGGACGGATTATCCTTTTAGCCTTGCAACATCCCCAGTTCTGGAATCGAGTTTTCGCATATCGTTTTTAC-ATCTATAAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCCAGAAGAGATTGATATGGTGGTCGAAAATATAGATACCTCGTA-TTTTATTTTAACGTTTATTTAGAATTGACCGTTAATGGAAATGATTAATATCATCCATCTCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258121" ref_strand="-" ref_description="SGN-E258121 [cLEG-48-N3]">
      <seq>aaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcatctagctcaacttgttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="931" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="631" g_stop="232" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="422"/>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E258121" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258121" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="631" e_stop="232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTT</genome_strand>
        <mrna_strand>AAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747304" ref_strand="+" ref_description="SGN-E747304 [GI|47104658]">
      <seq>tggagtgtgtactacaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctagggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaacttgtcgcagaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcgtttcatcacaacaactgaaggaagttcctgttcaggaggaactatttagtaaggctgagctgttgggtgaaaactaatatgggcggattatcctttagacttgcaacatccacagttctggaatcgagttttcgtatatcgtttttacaatcttttagttgggtccattgcattcccagagttttctagtcctagaagagattgatatactggtcgaaaatatagatacctcgtatttttgttttaacgtttatttcgaattgagtgttaatggaaatgattaatatcttttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6257" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5957" g_stop="5634" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="458" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="588" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="746" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="848" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="849" r_stop="953" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="954" r_stop="1082" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1083" r_stop="1223" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1224" r_stop="1324" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1325" r_stop="1382" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="717" g_stop="246" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1383" r_stop="1854" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1859" polyA_stop="1873"/>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E747304" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1854</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5957" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATC</genome_strand>
        <mrna_strand>TGGAGTGTGTACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591179" ref_strand="-" ref_description="SGN-E591179 [44886]">
      <seq>ggcaagtcatcaagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatccccaggagagactaaagtgtggcagtacattacactcacaaagaagatcttcttgattgactgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaaccttcctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttgaaagagcttataagataaagaattgggttgacgagtatgactttcttcaacagctatgcaagttaacaggcaaacttctgaagggaggcgaacctgactataagactgctgccaagatggttctccatgattggcaaagaggcaaaattcctttctttgttccacctccaaagctggatgatgagcaaaatgaacttgtcgctgaggcagacacagccgtggataacgatcaggccacagctgctctcaaagctattgctgatgtcgtttcatcacaacaactgaaggaagttcctgttcaagaggaactatttagtaaggctgagctgttgggtgaaaactgaaatggacggatcatcttttctatatcattcttatatctttaagtttaggtccattgctttccccagtttttctagtcctagtagagattgatatgcgggtcgaaaatatagatatctcgtattttgttttaatgtttatttcgaattttgtcttatttacggaattgaattggtatgagcttaaatggaaatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="3672" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3372" g_stop="3334" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="0.95"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="182" r_length="142" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="283" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="341" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="717" g_stop="448" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="611" r_length="270" r_score="0.952"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="447" i_stop="398" i_length="50">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.19"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="397" g_stop="268" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="753" r_length="142" r_score="0.677"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E591179" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591179" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3372" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="448"/>
          <exon e_start="397" e_stop="268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGTCATC-AGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTAT-CCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTA-T-ATC-GTT-T-T-T-A--C--A-ATCTTTTAG-TTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGT</genome_strand>
        <mrna_strand>GGCAAGTCATCAAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAAGATCTTCTTGATTGACTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTTCCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTGAAAGAGCTTATAAGATAAAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTTAACAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCGAACCTGACTATAAGACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAAAATTCCTTTCTTTGTTCCACCTCCAAAGCTGGATGATGAGCAAAATGAACTTGTCGCTGAGGCAGACACAGCCGTGGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGATGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAAGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTGAAATGGACGG..................................................ATCATCTTTTCTATATCATTCTTATATCTTTAAGTTTAGGTCCATTGCTTTCCCCAGTTTTTCTAGTCCTAGTAGAGATTGATATGCGGGTCGAAAATATAGATATCTCGTA-TTTTGTTTTAATGTTTATTTCGAATTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590317" ref_strand="+" ref_description="SGN-E590317 [43911]">
      <seq>cttgatgccagagacccctatggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctggcttgggcaacaaagggatggcttagagtgctctccaaggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgactaaagagcgataagcaagtaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaagatcttcttgattgactgtcctggtgtagtttatcagaatcatgataccgaaacagatatagtcttgaagggcgtggtacgagtgacaaaccttcctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttgaaagagcttataagataaagaattgggttgacgagtatgactttcttcaacagctatgcaagttaacaggcaaacttctgaagggaggcgaacctgactataagactgctgccaagatggttctccatgattggcaacgaggcaaaatcctttctttgttccacctccaaagctggatgatgagcaaaatgaaccttgtcgctgaggcagacacagccgtggataacgatcagggcacagctgctctcaagctattgtgatgtcgttcatcacaacaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="4287" stop="215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3987" g_stop="3889" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="205" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="334" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="475" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="576" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="634" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="717" g_stop="515" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="834" r_length="200" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E590317" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3987" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCT-GCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAA-CTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAA</genome_strand>
        <mrna_strand>CTTGATGCCAGAGACCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCCAAGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGACTAAAGAGCGATAAGCAAGTAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAAGATCTTCTTGATTGACTGTCCTGGTGTAGTTTATCAGAATCATGATACCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTTCCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTGAAAGAGCTTATAAGATAAAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTTAACAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCGAACCTGACTATAAGACTGCTGCCAAGATGGTTCTCCATGATTGGCAACGAGGCAA-AATCCTTTCTTTGTTCCACCTCCAAAGCTGGATGATGAGCAAAATGAACCTTGTCGCTGAGGCAGACACAGCCGTGGATAACGATCAGGGCACAGCTGCTCTC-AAGCTATTG-TGATGTCG-TTCATCACAACAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700357" ref_strand="+" ref_description="SGN-E700357 [FA12DF01]">
      <seq>gctttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctagggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccnaatgaacttgtcgctgaggcagacacagccgttgataacgatcaggccacagctgctctcaaagctattgctgacgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="4030" stop="234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3903" g_stop="3889" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="120" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="249" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="390" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="491" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="549" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="717" g_stop="534" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="733" r_length="184" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E700357" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3903" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCG</genome_strand>
        <mrna_strand>GCTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCNAATGAACTTGTCGCTGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573111" ref_strand="+" ref_description="SGN-E573111 [32370]">
      <seq>ggaatatccaactttggcatttcatgcaagtgtcaccaaatcctttggaaagggttctcttttgtcagtgctgagacagttttctcgactaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggatagactaaagtgtggcagtacattacactcacaaagaagatcttcttgattgactgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaaccttcctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttgaaagagcttataagataaagaattgggttgacgagtatgactttcttcaacagctatgcaagttaacaggcaaacttctgaagggaggcgaacctgactataagactgctgccaagatggttctccatgattggcaaagaggcaaaattcctttctttgttccacctccaaagctggatgatgagcaaaatgaacttgtcgctgaggcagacacagncgtggataacgatcaggccacagctgctctcaaagctattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="3975" stop="240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3675" g_stop="3624" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="181" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="322" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="423" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="481" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="717" g_stop="540" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="659" r_length="178" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E573111" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3675" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTG</genome_strand>
        <mrna_strand>GGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAATCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGACTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGATAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAAGATCTTCTTGATTGACTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTTCCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTGAAAGAGCTTATAAGATAAAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTTAACAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCGAACCTGACTATAAGACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAAAATTCCTTTCTTTGTTCCACCTCCAAAGCTGGATGATGAGCAAAATGAACTTGTCGCTGAGGCAGACACAGNCGTGGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254505" ref_strand="+" ref_description="SGN-E254505 [cLEG-29-O15]">
      <seq>gttctcttttgtcagtgctgagacagttttctcgtgctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaataccattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcaccaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattggcaaagaggcaacattcctttctttgttccacctccaaagcttgatgatgagccaaatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="3761" stop="306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3461" g_stop="3334" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="272" r_length="142" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="373" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="431" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="717" g_stop="606" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="543" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E254505" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3461" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGT-CTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATA-CATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCA-CAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAAC</genome_strand>
        <mrna_strand>GTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTGCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACCATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACCAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575754" ref_strand="+" ref_description="SGN-E575754 [35428]">
      <seq>ctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaagggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaagatcttcttgattgactgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaaccttcctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttggaaagagcttataagcataaagaatcgggttgacgagtatgactttcttcaacagctatgcaagttaacaggcaaacttctgaagggaggcgaacctgactataagactgctgccaagatggttctccgatgattggcaaagaggctaaaattcctttctttgttccagctccaaagctggatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="3703" stop="317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3403" g_stop="3334" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="212" r_length="142" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="315" r_length="103" r_score="0.921"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="0.85"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="373" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="717" g_stop="617" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="476" r_length="103" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E575754" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3403" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAA-GGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTT-AAAAGAGCTTATAAG-ATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCC-ATGATTGGCAAAGAGGC-AACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGA</genome_strand>
        <mrna_strand>CTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAAGATCTTCTTGATTGACTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTTCCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTGGAAAGAGCTTATAAGCATAAAGAATCG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTTAACAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCGAACCTGACTATAAGACTGCTGCCAAGATGGTTCTCCGATGATTGGCAAAGAGGCTAAAATTCCTTTCTTTGTTCCAGCTCCAAAGCTGGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407680" ref_strand="+" ref_description="SGN-E407680 [PPI-8-K19]">
      <seq>atttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctccaaggaatatccaactttggcatttcatgcaagtgtcaccaaatcctttggaaagggttctcttttgtcagtgctgagacagttttctcgactaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaagatcttcttgattgactgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaaccttcctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttgaaagagcttataagataaagaattgggttgacgagtatgactttcttcaacagctatgcaagttaacaggcaaacttctgaagggaggcgaacctgactataagactgctgccaagatggttctccatgattggcaaagaggcaaaattcctttctttgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="4250" stop="339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3950" g_stop="3889" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="167" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="296" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="437" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="538" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="596" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="717" g_stop="639" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="675" r_length="79" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E407680" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3950" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTC</genome_strand>
        <mrna_strand>ATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCCAAGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAATCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGACTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAAGATCTTCTTGATTGACTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTTCCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTGAAAGAGCTTATAAGATAAAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTTAACAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCGAACCTGACTATAAGACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAAAATTCCTTTCTTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266964" ref_strand="+" ref_description="SGN-E266964 [cLEI-7-N11]">
      <seq>aagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattaacgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcacgcaaacttctgaagggaggtgaacctgactacaatactgctgccaagatggttctccatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="3764" stop="368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3638" g_stop="3624" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="144" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="285" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="386" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="444" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="717" g_stop="668" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="494" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E266964" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3638" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTG</genome_strand>
        <mrna_strand>AAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAACGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCACGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295559" ref_strand="+" ref_description="SGN-E295559 [cLET-23-N21]">
      <seq>caactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaacctacctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttaaaagagcttataagatagagaattgggttgacgagtatgactttcttcaacagctatgcaagtcttcaggcaaacttctgaagggaggtgaacctgactacaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="3967" stop="394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3667" g_stop="3624" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="173" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="314" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="415" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1263" g_stop="1206" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="473" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="717" g_stop="694" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="497" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E295559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3667" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1206"/>
          <exon e_start="717" e_stop="694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGTAAATTGAAAATTTATAACTTGATGATTATATTTTGTTATACTTTTCATTAGTCTCTCGGGTATGATCTGAAGTGTTTTGTGCTGTTTGTCAGCTCATATAGGACGATCACTTAAACCGGTTCCTTTTATGTTTTTTCATTAGTTCATGTAGGACAAAGTGAAGCTCACTAGACGAACACTTGGTAGTCAAAGTTAAAGTTATGTAGCAGTATTGTTGGACAAAAATAATTGAGAACTCAGTTGGCCTCTAATAAGTGTTAATTGTGAAGTAGCACTTTCAGGTTGAGAAATGATTTCCTAAATGATAGAAAAATTGTAATGTCAATTTTATATATATCTTTATTCTACAGGGATTTTCGATAAAATTTGCATATTTGGCTACAATTCTGCAATGTGCTTGACATCCTTGTACTACTTTTCTTTTAGTGCTTATGGCTGTCCAGAGAGTAGTATAGTTGGTATAAAATCTTAATTTGTGCTATTCAGGGAGGTGAACCTGACTACAATACT</genome_strand>
        <mrna_strand>CAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGAACCTGACTACAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465961" ref_strand="+" ref_description="SGN-E465961 [cPRO-22-D14]">
      <seq>gattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttccgatgtcgttgttcaggttcttgatgccagagacccctatggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctccaaggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgactaaagagcgataagcaagtaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaagatcttcttgattgactgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaaccttcctgatgcttctgaacacattagcgaagtggtgaatcgcgttaagaaggagcatcttgaaagagcttataagataaagattgggttgacgagtatgactttcttcacagctatgcaagttaacaggcaaacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="4942" stop="926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4642" g_stop="4487" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="258" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="363" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="492" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="633" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="733" r_length="100" r_score="0.950"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1263" g_stop="1210" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="786" r_length="53" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E465961" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4642" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCT</genome_strand>
        <mrna_strand>GATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCCGATGTCGTTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCCAAGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGACTAAAGAGCGATAAGCAAGTAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAAGATCTTCTTGATTGACTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTTCCTGATGCTTCTGAACACATTAGCGAAGTGGTGAATCGCGTTAAGAAGGAGCATCTTGAAAGAGCTTATAAGATAAAG-ATTG....................................................................................................................................................................................................................................................................................GGTTGACGAGTATGACTTTCTTC-ACAGCTATGCAAGTTAACAGGCAAACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472018" ref_strand="+" ref_description="SGN-E472018 [cSTB-27-M15]">
      <seq>ccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgactaaagagcgataagcaagtaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaagatcttcttgattgactgtcctggtgtagtttatcagaatcatgataccgaaacagatatagtcttgaagggcgtggtacgagtgacaaaccttcctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttgaaagagcttataagataaagaattgggttgacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="3968" stop="1239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3668" g_stop="3624" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="174" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="315" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1640" g_stop="1540" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="416" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1263" g_stop="1254" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="426" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E472018" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3668" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1540"/>
          <exon e_start="1263" e_stop="1254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCCCAAAATTCCATATCTAGAATCTCTGTTCTGCTTAAATGATATTTTGATATTCCAGGGTTGACGAG</genome_strand>
        <mrna_strand>CCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGACTAAAGAGCGATAAGCAAGTAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAAGATCTTCTTGATTGACTGTCCTGGTGTAGTTTATCAGAATCATGATACCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTTCCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTGAAAGAGCTTATAAGATAAAGAATTG....................................................................................................................................................................................................................................................................................GGTTGACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449349" ref_strand="+" ref_description="SGN-E449349 [cSTS-6-O1]">
      <seq>tgcaagtgtcaccaaatcctttggaaagggttctcttttgtcagtgctgagacagttttctcgactaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaagatcttcttgattgactgtcctggtgtagtttatcagaatcatgattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaaccttcctgatgcttctgaacacattagcgaagtgttgaatcgcgttaagaaggagcatcttgaaagagcttataagataaagaattggtaaattttcttatcatttgattttatttgtagatttcattaagtactcagcaggacgttcttctagtttgtttagcctgcttcctcatagatagaaatgggaacacattgtagttgtatctgcttcgtcatttgttctattatatatgtacatttggtcaattatctcaccaagtaaaatgagaatcatgtatgctttcngcagtttgtgttgacacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="3764" stop="1019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3651" g_stop="3624" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="157" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="298" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1640" g_stop="1319" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="620" r_length="322" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E449349" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3651" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCC</genome_strand>
        <mrna_strand>TGCAAGTGTCACCAAATCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGACTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAAGATCTTCTTGATTGACTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTTCCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTGAAAGAGCTTATAAGATAAAGAATTGGTAAATTTTCTTATCATTTGATTTTATTTGTAGATTTCATTAAGTACTCAGCAGGACGTTCTTCTAGTTTGTTTAGCCTGCTTCCTCATAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTCAATTATCTCACCAAGTAAAATGAGAATCATGTATGCTTTCNGCAGTTTGTGTTGACACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584076" ref_strand="+" ref_description="SGN-E584076 [9897]">
      <seq>agcgataagcaagcaatctctggtaggttttatagagctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgccaggtggctcctatcccaggagagactaaagtgtggccgtacattacattcacaaagaagatcttcttgattgactgtcctggtgtaatatatcagaatcatggattccgaaacagatatagtcttgaagggcgtggtacgagtgacaaaccttcctgatgcttctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="3720" stop="1308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3420" g_stop="3334" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2743" g_stop="2603" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="231" r_length="142" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1640" g_stop="1608" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="264" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E584076" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3420" e_stop="3334"/>
          <exon e_start="2743" e_stop="2603"/>
          <exon e_start="1640" e_stop="1608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGATAAGCAAGCAATCTCT-GTTGGTTTTATAG-GCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCAT-GATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTATGTGTCTTCTACTTTGCTTTATCAGGCTTTTGCTTGTGCTTGTGACTTGTCAAAGTCAAGCTATATTTCTTGGTTTATTTTGATACCTACCGCTTTATTTAAAGGACTTTGGTATAAAAAGGACTTTTAAGGCATAGGTGGCCTGATTTTACCTAGATAATCTTGCTTGCAATATTTGTGGTCCTCTAGAGAAAAATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCTACTCGAGCTATTAAGGAGGGAGAGGAGTTTTGGGTTCCTGAACTTTAGTCCAAACTCCCTAAGAGTTGTGCTATTGTCCTGTTTCCTGTTGGATATGTAATACACCATGAACTGGAACGTACTAGTATCAATAAAGAAAGATTTATAATCTACATAGCCCTCGATTTATGTGTTATTTATCCATTGCTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTAATCCTGGGGACCTTTATAAAAAAATTGAAAGATTTATCTTGTTGTATAGGATATCTTCCCTTTATTACAGATTCCTTTGCCTCGTCTCAGTTGATGAAATATCTTCTTGTCTATATCACTTTGCTGTAAGCATGAGGTTCTTTGACTGACTACCTCAAAACCTCAAAATTTGGGGTTCCATTTCCAGGTACGAGTGACAAACCTACCTGATGCTTCTGAA</genome_strand>
        <mrna_strand>AGCGATAAGCAAGCAATCTCTGGTAGGTTTTATAGAGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCCAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCCGTACATTACATTCACAAAGAAGATCTTCTTGATTGACTGTCCTGGTGTAATATATCAGAATCATGGATTCCGAAACAGATATAGTCTTGAAGGGCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTGACAAACCTTCCTGATGCTTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292146" ref_strand="+" ref_description="SGN-E292146 [cLET-1-O17]">
      <seq>attccagagatgtgttcttatggtgatttgagatcaaatatcctcttgtgttcactttttataagtacttcaattttgttttcctagaagttcttattgttggcatttttttaaaatgaaattttggtcgccaatgttaatttaggctagctactaggacagcgcttctatgactggcatacataggatgatctcatatagttatgatgtcggaagcatttagtcatgaatacatttggataggggaagattggaaacaaatcaattgcaatgatgctgttgtgtggatgctggtcttccctactttggaacttcgatgatattgctctgaaagaggtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="2704" stop="1764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2404" g_stop="2064" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E292146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2404" e_stop="2064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</genome_strand>
        <mrna_strand>ATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372888" ref_strand="+" ref_description="SGN-E372888 [TUS-32-B23]">
      <seq>attccagagatgtgttcttatggtgatttgagatcaaatatcctcttgtgttcactttttataagtacttcaattttgttttcctagaagttcttattgttggcatttttttaaaatgaaattttggtcgccaatgttaatttaggctagctactaggacagcgcttctatgactggcatacataggatgatctcatatagttatgatgtcggaagcatttagtcatgaatacatttggataggggaagattggaaacaaatcaattgcaatgatgctgttgtgtggatgctggtcttccctactttggaacttcgatgatattgctctgaaagaggtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="2704" stop="1764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2404" g_stop="2064" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E372888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2404" e_stop="2064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</genome_strand>
        <mrna_strand>ATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292323" ref_strand="+" ref_description="SGN-E292323 [cLET-1-O17](-)">
      <seq>aattccagagatgtgttcttatggtgatttgagatcaaatatcctcttgtgttcactttttataagtacttcaattttgttttcctagaagttcttattgttggcatttttttaaaatgaaattttggtcgccaatgttaatttaggctagctactaggacagcgcttctatgactggcatacataggatgatctcatatagttatgatgtcggaagcatttagtcatgaatacatttggataggggaagattggaaacaaatcaattgcaatgatgctgttgtgtggatgctggtcttccctactttggaacttcgatgatattgctctgaaagaggtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="2705" stop="1765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2405" g_stop="2065" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E292323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2405" e_stop="2065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCC</genome_strand>
        <mrna_strand>AATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372887" ref_strand="+" ref_description="SGN-E372887 [TUS-32-B23](-)">
      <seq>aattccagagatgtgttcttatggtgatttgagatcaaatatcctcttgtgttcactttttataagtacttcaattttgttttcctagaagttcttattgttggcatttttttaaaatgaaattttggtcgccaatgttaatttaggctagctactaggacagcgcttctatgactggcatacataggatgatctcatatagttatgatgtcggaagcatttagtcatgaatacatttggataggggaagattggaaacaaatcaattgcaatgatgctgttgtgtggatgctggtcttccctactttggaacttcgatgatattgctctgaaagaggtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="2705" stop="1765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2405" g_stop="2065" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E372887" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2405" e_stop="2065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCC</genome_strand>
        <mrna_strand>AATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245726" ref_strand="+" ref_description="SGN-E245726 [cLEF-48-I8]">
      <seq>caaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctagggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattgattgtcctggtgtagtttatcagaatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="4931" stop="2334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4631" g_stop="4487" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="247" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="352" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="481" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2743" g_stop="2634" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="591" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E245726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4631" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGA</genome_strand>
        <mrna_strand>CAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458929" ref_strand="+" ref_description="SGN-E458929 [cPRO-32-H10]">
      <seq>agaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttctgatgtcgttgttcaggttcttgatgccagagacccctatggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctccaaggaatatccaactttggcatttcatgcaagtgtcaccaaatcctttggaaagggttctcttttgtcagtgctgagacagttttctcgactaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcaccaagaagatcttcttgattgactgtcctggtgtagtttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="5498" stop="2344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5198" g_stop="5156" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="173" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="331" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="433" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="538" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="667" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2743" g_stop="2644" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="767" r_length="100" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E458929" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5198" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATC</genome_strand>
        <mrna_strand>AGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCCAAGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAATCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGACTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACCAAGAAGATCTTCTTGATTGACTGTCCTGGTGTAGTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238176" ref_strand="+" ref_description="SGN-E238176 [cLED-22-G3]">
      <seq>gattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctagggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatcccaggagagactaaagtgtggcagtacattacactcacaaagaggatattcttgattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="4890" stop="2364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4590" g_stop="4487" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="206" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="311" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="440" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2743" g_stop="2664" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="520" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E238176" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4590" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGA</genome_strand>
        <mrna_strand>GATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458992" ref_strand="+" ref_description="SGN-E458992 [cPRO-33-C21]">
      <seq>ctacaatgttatattagaagaaaggaagctgcccatgtcccttttaaatgatcatcataagcaaggaaaagttcatcttcttgacgacgagcctatcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattatattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcggagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttctgatgtcgttgttcacggtcttgatgccagagacccctatggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacgtatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacgaagggatggcttagagtgctctccaaggaatatccaactttggcatttcatgcaagtgtcaccaaatcctttggaaagggatctcttttgtcagtgctgagacagttttctcgactaaagagcgataagcaagcaatctctgttgggtttataggctatcccaatgttggcaagtcatcagttattaatacgttgcgcacaaagaatgtttgcaaagtggctcctatcccaggagagactatagtgtggcagtacattacactcacaacgaagatcttcttgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="5516" stop="2365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5216" g_stop="5156" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="191" r_length="130" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="349" r_length="158" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="451" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="556" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="685" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2743" g_stop="2665" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="764" r_length="79" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E458992" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5216" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTG</genome_strand>
        <mrna_strand>CTACAATGTTATATTAGAAGAAAGGAAGCTGCCCATGTCCCTTTTAAATGATCATCATAAG.........................................................................................................................................................................................................................................................................CAAGGAAAAGTTCATCTTCTTGACGACGAGCCTATCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTATATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCGGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTGTTCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTGATGCCAGAGACCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACGTATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACGAAGGGATGGCTTAGAGTGCTCTCCAAGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAATCCTTTGGAAAG.................................................................................................................................................................GGATCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGACTAAAGAGCGATAAGCAAGCAATCTCTGTTGGGTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACGTTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAAGTGGCTCCTATCCCAGGAGAGACTATAGTGTGGCAGTACATTACACTCACAACGAAGATCTTCTTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461451" ref_strand="+" ref_description="SGN-E461451 [cPRO-8-D3]">
      <seq>ctacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttctgatgtcgttgttcaggttcttgatgccagagacccctatggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctccaaggaatatccaactttggcatttcatgcaagtgtcaccaaatcctttggaaagggttctcttttgtcagtgctgagacagttttctcgactaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaagggtggctcctatcccaggagagactaaagtgtggcagtacattacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="5516" stop="2388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5216" g_stop="5156" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="191" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="349" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="451" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="556" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="685" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2743" g_stop="2688" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="742" r_length="57" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E461451" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5216" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAA-GGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACT</genome_strand>
        <mrna_strand>CTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCCAAGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAATCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGACTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440518" ref_strand="+" ref_description="SGN-E440518 [cSTA-17-C14]">
      <seq>cgagggcaccaaagaatgtttgagaaaggacaaagtaaaccgaatttggagcgagctctaccaaagtcatagacctcttctgatgtcgttgttcaggttcttgatgccagagacccctatggtacaaggtgataccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctccaaggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgactaaagagcgataagcaagtaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaaggtggctcctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="4870" stop="2423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4579" g_stop="4487" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.817"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="198" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="303" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="432" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2743" g_stop="2723" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="453" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E440518" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4579" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
          <exon e_start="2743" e_stop="2723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAA-CGAATTTGGAGTGAGCTCTA-CAAAGTCATAGA-CTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAATGTAAGTTTTCCCATATGTTCTCCTGCCTTTCCAGTCTGTTGTGATCTTCTTTGCTCATTTGTTTCTGTACTGAGACAGTTTGCAATTTGTCTCCTTGAGAATCGTCTTTTCCGTGATACTTCTTTGTTAGACATGATTGGTGAATTGCACAATTTGTTACTTCAATTTTTGCTCTTATCTTTATGAGACTCTTTACCTGATACAATTCTTCCTCGTTATCGAAAAATTGTGATTGCCATTCAAGCTGTTCCAAATTTGATTTTAGCTAATCATGTGATGCTGCTTTTAGGAAGATTAAATGCAGGATAGTGAAGAGTAAACTTGATGTTCCAGACTATATTCACGAGTATCAGATATTTATACAGCTCTAAAACTTAATTTCCTAACCTTTCACCTTCTCTGTTAATATTAAATAAAGGAAACTTGTTTTCTTGTCGGATAATGACTGTTGTTTTTCTTGTCACCTGTACTTGACGTGTAAAAAGTCAAATCTTGTGAAATGTAATCTCACTTTGAGTACTATGCTCAGACAACCACATACATTTTGATATGGTCGTGGAACTAACCTTTGCTCCTTTCCTTTGGAATAGGTTTGCAAGGTGGCTCCTATC</genome_strand>
        <mrna_strand>CGAGGGCACCAAAGAATGTTTGAGAAAGGACAAAGTAAACCGAATTTGGAGCGAGCTCTACCAAAGTCATAGACCTCTTCTGATGTCGTTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTATGGTACAAGGTGATACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCCAAGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGACTAAAGAGCGATAAGCAAGTAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAAGGTGGCTCCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440803" ref_strand="+" ref_description="SGN-E440803 [cSTA-27-G21]">
      <seq>gttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttctgatgtcgttgttcaggttcttgatgccagagacccctatggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctccaaggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgactaaagagcgataagcaagtaatctctgttggttntataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtttgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="5181" stop="3032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4881" g_stop="4761" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="279" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="381" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="486" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="615" r_length="129" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E440803" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4881" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT</genome_strand>
        <mrna_strand>GTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCCAAGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGACTAAAGAGCGATAAGCAAGTAATCTCTGTTGGTTNTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249079" ref_strand="+" ref_description="SGN-E249079 [cLEF-49-F23]">
      <seq>ttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctaaggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaagggttctcttttgtcagtgctgagacagttttctcgtctaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcacaaagaatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="4959" stop="3032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4775" g_stop="4761" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="173" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="275" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="380" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3462" g_stop="3334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="509" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E249079" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4775" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT</genome_strand>
        <mrna_strand>TTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAAGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584401" ref_strand="+" ref_description="SGN-E584401 [10226]">
      <seq>atcagaagcaagtaaaagttcatcttcttgaccacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttctgatgtcgttgttcaggttcttgatgccagagacccctatggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaaagggngatggcttagagtgctctccaaggaatatccaactttggcatttcatgcaagtgtcaccaaatcctttggaaagggttctcttttgtttccccaaaaaaggtgggccccctttgagggacagttttctcgactaaaagagcgattaagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="5197" stop="3040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5163" g_stop="5156" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="138" r_length="130" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="296" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="398" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="506" r_length="108" r_score="0.914"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3623" i_stop="3493" i_length="131">
            <donor d_prob="0.903" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.50"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3492" g_stop="3340" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="653" r_length="147" r_score="0.784"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E584401" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5163" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3492" e_stop="3340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAAC-AAA-GG-GATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCT-AAAGAGCGA-TAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGC-GCACA</genome_strand>
        <mrna_strand>ATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACCACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAAGGGNGATGGCTTAGAGTGCTCTCCAAGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAATCCTTTGGAAAG...................................................................................................................................GGTTC-TCTTTTGTTTCCCCAAAAAAGGTGGG-CCCCCTTTG--A--G--G-GACAGTTTTCTCGACTAAAAGAGCGATTAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473866" ref_strand="+" ref_description="SGN-E473866 [cSTB-34-C5]">
      <seq>aaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttctgatgtcgttgttcaagttcttgatgccagagacccctatggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaaaggatggcttagagtgctctccaaagaatatccaactttggcatttcatgcaagtgtcaccaaatcctttggaaagggttctcttttgtcagtgctgagacagttttctcgactaaagagcgataagcaagcaatctctgttggttttataggctatcccaatgttggcaagtcatcagttattaatacattgcgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="5185" stop="3041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4885" g_stop="4761" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="283" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="385" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="490" r_length="105" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3462" g_stop="3341" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="612" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E473866" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4885" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCAC</genome_strand>
        <mrna_strand>AAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTGTTCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAAGGATGGCTTAGAGTGCTCTCCAAAGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAATCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGACTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466761" ref_strand="+" ref_description="SGN-E466761 [cPRO-26-A17]">
      <seq>aagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttctgatgtcgttgttcaggttcttgatgccagagacccctatggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctccaaggaatatccaactttggcatttcatgcaagtgtcaccaaatcctttggaaagggttctcttttgtcagtgctgagacagttttctcgactaaagagcgataagcaagcaatctctgttggttttataggctatccccatgttggcaagtcatcagttattaatacattgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="5193" stop="3044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4893" g_stop="4761" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="291" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="393" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="498" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3462" g_stop="3344" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="617" r_length="119" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E466761" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4893" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCG</genome_strand>
        <mrna_strand>AAGCAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCCAAGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAATCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGACTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCCATGTTGGCAAGTCATCAGTTATTAATACATTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406933" ref_strand="+" ref_description="SGN-E406933 [PPI-5-B11]">
      <seq>caacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttctgatgtcgttgttcaggttcttgatgccagagacccctatggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctccaaggaatatccaactttggcatttcatgcaagtgtcaccaaatcctttggaaagggttctcttttgtcagtgctgagacagttttctcgactaaagagcgataagcaagcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="5966" stop="3103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5666" g_stop="5634" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="167" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="297" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="455" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="557" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3728" g_stop="3624" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="662" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161">
            <donor d_prob="0.903" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3462" g_stop="3403" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="722" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E406933" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5666" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3624"/>
          <exon e_start="3462" e_stop="3403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGTATTCTTGTAGTGCCTTCTGATCTTGCCCCACCTCTGAATATAGACATACACTAAGTACCATAGTGATTTGTAAAATTATGGCTAATTGTGCATCCATGTGCTTGTGCCCCTGCGGGTAACTTTTTGTCTGTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATC</genome_strand>
        <mrna_strand>CAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCCAAGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAATCCTTTGGAAAG.................................................................................................................................................................GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGACTAAAGAGCGATAAGCAAGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702113" ref_strand="+" ref_description="SGN-E702113 [FA17DD04]">
      <seq>gggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagccattcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctctaggggaatatccaactttggcatttcatgcaagtgtcaccaagtcctttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6130" stop="3325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5830" g_stop="5634" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="331" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="461" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="619" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="721" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3728" g_stop="3625" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="826" r_length="105" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E702113" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5830" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTA-GGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAA</genome_strand>
        <mrna_strand>GGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCATTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466607" ref_strand="+" ref_description="SGN-E466607 [cPRO-25-C6]">
      <seq>ttaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttccgatgtcgttgttcaggttcttgatgccagagacccctatggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgctttgggcacaaagggatggcttagagtgctctccaagggatatccaactttggcatttcatgcaagtgtcaccaagtccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="5503" stop="3330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5203" g_stop="5156" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="178" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="336" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="438" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3728" g_stop="3630" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="537" r_length="99" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E466607" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5203" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTT</genome_strand>
        <mrna_strand>TTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCCGATGTCGTTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTTGGGCACAAAGGGATGGCTTAGAGTGCTCTCCAAGGGATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721282" ref_strand="+" ref_description="SGN-E721282 [FC13BD01]">
      <seq>ggtggagtgtatactccaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagccattcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatgtcgttattcaggttcttgatgccagagacccctgtggtacaaggtgctaccatttggagaaacatttgaaagaaaattttgcagcacaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaagggatggcttanagtgctctctagggaatatccaactttggcatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6258" stop="3352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5959" g_stop="5634" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="460" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="590" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="748" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="850" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="0.88"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3728" g_stop="3652" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="851" r_stop="926" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E721282" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>927</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5959" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAA-TTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCA</genome_strand>
        <mrna_strand>GGTGGAGTGTATACTCCAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCATTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTTTGCAGCAC-AACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAAC-AAGGGATGGCTTANAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462997" ref_strand="+" ref_description="SGN-E462997 [cPRO-13-E22]">
      <seq>cctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttccgatgtcgttgttcaggttcttgatgccagagacccctatggtacaaggtgctaccatttggagaaacatttgaaagaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaacaaagggatggcttagagtgctctccaaggaatatccaactttggcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6015" stop="3353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5715" g_stop="5634" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="216" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="346" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="504" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="605" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3728" g_stop="3653" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="681" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E462997" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5715" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTC</genome_strand>
        <mrna_strand>CCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCCGATGTCGTTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAG-AAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCCAAGGAATATCCAACTTTGGCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440819" ref_strand="+" ref_description="SGN-E440819 [cSTA-27-K11]">
      <seq>gttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttctgatgtcggtgttcaggttcttgatgccagagacccctatggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttgggcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="5181" stop="3403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4881" g_stop="4761" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="279" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="381" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3728" g_stop="3703" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="407" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E440819" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4881" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTGGGCAAC</genome_strand>
        <mrna_strand>GTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGGTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTGGGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458204" ref_strand="+" ref_description="SGN-E458204 [cPRO-5-A9]">
      <seq>aagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttctgatgtcgttgttcaggttcttgatgccagagacccctatggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="5193" stop="3409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4893" g_stop="4761" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="291" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="393" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3728" g_stop="3709" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="413" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E458204" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4893" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGCTTG</genome_strand>
        <mrna_strand>AAGCAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469825" ref_strand="+" ref_description="SGN-E469825 [cSTB-14-K24]">
      <seq>gttctttaaagaatatctctaaactcggctttccagtaactacaaggttgtgttaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttctgatgtcgttgttcaggttcttgatgccagagacccctatggtacaaggtgctaccatttggagaaacatttgaaagaaaattgcaagcacaaacatatggtccttttgcttaataagtgtgatttggtccctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="5555" stop="3579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5255" g_stop="5156" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="230" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="388" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3990" g_stop="3889" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="490" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3728" g_stop="3712" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="507" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E469825" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5255" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3889"/>
          <exon e_start="3728" e_stop="3712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGGTTTGCTATTATTATTAACATAGTAGACATTTTTTCTTTATTATATATATTTCTATTTCCCCTTCGGCCTCTCTCTTTGAGTTGTCTTGGCTTCTTTTTTCAGGATGTCAGTTTTAACTTCAGGATTTGTTAAAATTGATAATTTGTTCTGCCTATGTAGTGTGATTTGGTCCCTGC</genome_strand>
        <mrna_strand>GTTCTTTAAAGAATATCTCTAAACTCGGCTTTCCAGTAACTACAAGGTTGTGTTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTGTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTATGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG................................................................................................................................................................TGTGATTTGGTCCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703973" ref_strand="+" ref_description="SGN-E703973 [FA23AA06]">
      <seq>cggtatactacaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagccattcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcataaactcttctgatgtcgttattcaagttcttgatgccagagacccctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6251" stop="3665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5953" g_stop="5634" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="454" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="584" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="742" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3990" g_stop="3965" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="768" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E703973" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5953" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
          <exon e_start="3990" e_stop="3965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAGGTTTGTTTCGTGGCTTTAAACTCCTGCTATATCTAATATCTAAAATGAAGTATGTTATTTGATGTTGATGTTCTTCCAACTAAATGCTTTTCTGGTGAAAAATGCAAAAAAATTTCTCTTGTATCCAAGTGTAAAACAATCACATCTTACTTAACCAAGCATACCAGGCTCAACTTGTCTGTCCTGATTTTTTCCTTGTTGCTTATTTGGTGGGCCCATGAAGTTTCAGTTAGTGTAGAAGATTGAATGTTGTGTTTACTTAGAGAACCGTGTTATGTTGTAGAGTCTATACTTCGTAGTCTGCTCCTTAATTACAGGAGAGTTCCCCATTATTAATAAAATTGTTTACTTTATTCAAAAATCACCTGTCTGCTGTGTATGGACGGTATAATGTTCTGATCTAGTTTTCTCTGTCTAAGGAGGAAAGTATAGGATATTTTAGATGAAAGGTATACTGCTGGAAGTTGTAACTTACTGTGGTTAACCTGGATTGCAGGTTCTTGATGCCAGAGACCCCTGTGG</genome_strand>
        <mrna_strand>CGGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCATTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAAACTCTTCTGATGTCGTTATTCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATGCCAGAGACCCCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486648" ref_strand="+" ref_description="SGN-E486648 [cSTE-22-F20]">
      <seq>gtatactccaaccggccgagacgactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttctgatgtcgttgttcaggttcttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6251" stop="4178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5951" g_stop="5634" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="451" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="581" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="739" r_length="158" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E486648" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5951" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG</genome_strand>
        <mrna_strand>GTATACT-CCAACCGGCCGAGACGACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTGTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480228" ref_strand="+" ref_description="SGN-E480228 [cSTD-13-A8]">
      <seq>ctccaaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacgaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttctgatgtcgntggtcaggttcttgatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6246" stop="4178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5946" g_stop="5634" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="447" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="577" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="735" r_length="158" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E480228" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5946" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG</genome_strand>
        <mrna_strand>CTCCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGNTGGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689640" ref_strand="+" ref_description="SGN-E689640 [LH_Ea01G22]">
      <seq>tataaatcgccgattcctaaaccctagttttgttcttcctatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccggtgctgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacggggtggtattaaaagaaaggaagctgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtggctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagacatagactcttctgatgtcgttattccggttcttgaatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6212" stop="4184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5914" g_stop="5634" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="415" r_length="134" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="545" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4487" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="703" r_length="158" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E689640" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5914" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG</genome_strand>
        <mrna_strand>TATAAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCCTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGGTGCTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACGGGGTGGTATTAAAAGAAAGGAAGCTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGGCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGACATAGACTCTTCTGATGTCGTTATTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589379" ref_strand="+" ref_description="SGN-E589379 [42952]">
      <seq>caaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcaggggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttaagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccgtggatgaaaatgcagatgggattcagagatcttggttagggcacacaaatgtttgagaaaagggaccaaagtaaacgaaatttgggagccgagctctacaaagtcatagactcttctgatgttgttgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6243" stop="4189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5943" g_stop="5634" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="444" r_length="133" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="574" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4489" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="740" r_length="166" r_score="0.840"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E589379" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5943" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCA-GGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGAT-GGATTCAGAGATCTT-GTTA-GGCACAC-AATGTTTGAG-AAA-GGA-CAAAGTAAACG-AATTT-GGAG-TGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTC</genome_strand>
        <mrna_strand>CAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTA-AGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCGTGGATGAAAATGCAGATGGGATTCAGAGATCTTGGTTAGGGCACACAAATGTTTGAGAAAAGGGACCAAAGTAAACGAAATTTGGGAGCCGAGCTCTACAAAGTCATAGACTCTTCTGATGTTGTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332857" ref_strand="+" ref_description="SGN-E332857 [cTOD-19-A19]">
      <seq>caaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatgggatgaaatgctgatggattcagagatcttgttaggcacacaatgtttgagnaaagacnaagtaaacgaatttggagtgagctctancaagtcatagactcttctgatgtcgttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6243" stop="4190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5943" g_stop="5634" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="444" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="574" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4490" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="729" r_length="155" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E332857" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5943" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCAT-GGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATT</genome_strand>
        <mrna_strand>CAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGGATG-AAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGNAAAGACNAAGTAAACGAATTTGGAGTGAGCTCTANCAAGTCATAGACTCTTCTGATGTCGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206404" ref_strand="+" ref_description="SGN-E206404 [cLEC-23-N16]">
      <seq>ttaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactcttctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="5999" stop="4198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5699" g_stop="5634" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="200" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="330" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4498" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="477" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E206404" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5699" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATG</genome_strand>
        <mrna_strand>TTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562012" ref_strand="+" ref_description="SGN-E562012 [17324]">
      <seq>gtggagtgtatactccaaaccggccgagacgactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgacaatgcagatggattcaggagatcttgtttagggcacacaaatgtctgagcaaagggacaaaagtaaaacgaattttggaagcgagctctacaaaagtcatagactcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6258" stop="4200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5958" g_stop="5634" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="459" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="589" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4500" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="745" r_length="156" r_score="0.821"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E562012" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E562012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5958" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCA-GAGATCTTG-TTAGG-CACAC-AATGTTTGAG-AAA-GGAC-AAAGT-AAACGAA-TTTGG-AGTGAGCTCTAC-AAAGTCATAGACTCTTCTGA</genome_strand>
        <mrna_strand>GTGGAGTGTATACTCCAAACCGGCCGAGACGACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGACAATGCAGATGGATTCAGGAGATCTTGTTTAGGGCACACAAATGTCTGAGCAAAGGGACAAAAGTAAAACGAATTTTGGAAGCGAGCTCTACAAAAGTCATAGACTCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450682" ref_strand="+" ref_description="SGN-E450682 [cSTS-10-I1]">
      <seq>ggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6222" stop="4201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5922" g_stop="5634" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="423" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="553" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4501" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="697" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E450682" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5922" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTG</genome_strand>
        <mrna_strand>GGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486975" ref_strand="+" ref_description="SGN-E486975 [cSTE-23-H10]">
      <seq>ctccaaaccgaccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgcaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgccgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactataatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgttagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacnatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcatagactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6246" stop="4205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5946" g_stop="5634" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="447" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="577" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4505" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="717" r_length="140" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E486975" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5946" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCT</genome_strand>
        <mrna_strand>CTCCAAACCGACCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGCAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGCCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTATAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGTTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACNATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCATAGACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267916" ref_strand="+" ref_description="SGN-E267916 [cLEI-12-D22]">
      <seq>tacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtgggcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcgagttaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattgtgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagtgagctctacaaagtcatagactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6039" stop="4206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5739" g_stop="5634" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="240" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="370" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4506" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="509" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E267916" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5739" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTC</genome_strand>
        <mrna_strand>TACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGGCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CGAGTTAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTGTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428901" ref_strand="+" ref_description="SGN-E428901 [STM-51-I13]">
      <seq>tccaaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacgaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6245" stop="4212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5945" g_stop="5634" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="446" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="576" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4512" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="709" r_length="133" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E428901" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5945" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCAT</genome_strand>
        <mrna_strand>TCCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460138" ref_strand="+" ref_description="SGN-E460138 [cPRO-30-E17]">
      <seq>aaccggccgagacgactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttggtaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaagtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6241" stop="4212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5941" g_stop="5634" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="442" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="572" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4512" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="704" r_length="132" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E460138" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5941" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCAT</genome_strand>
        <mrna_strand>AACCGGCCGAGACGACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGGTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTAC-AAGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487716" ref_strand="+" ref_description="SGN-E487716 [cSTE-26-K10]">
      <seq>acgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccgtggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagtaaacgaatttggagcgagctctacaaagtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6230" stop="4212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5930" g_stop="5634" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="431" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="561" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4512" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="694" r_length="133" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E487716" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5930" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCAT</genome_strand>
        <mrna_strand>ACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCGTGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTCTACAAAGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487213" ref_strand="+" ref_description="SGN-E487213 [cSTE-24-H18]">
      <seq>gacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgcaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgccgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactataatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacancatgtttgagaaaggacaaagtaaacgaatttggagcgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6231" stop="4223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5931" g_stop="5634" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="432" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="562" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4523" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="684" r_length="122" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E487213" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5931" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTC</genome_strand>
        <mrna_strand>GACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGCAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGCCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTATAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACANCATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479711" ref_strand="+" ref_description="SGN-E479711 [cSTD-11-E9]">
      <seq>cacatattgaaaagctaggttttagctctaacgcctcctcttctttgtggagtgtatactccaaaccggccgagacgactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagaatcttgttaggcaccacaatgtttgagaaaggacaaagtaaacgaatttggagcgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6306" stop="4225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6006" g_stop="5634" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="505" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="635" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4525" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="757" r_length="122" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E479711" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6006" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATATTGAAAAAGCTAGGTTTTAGCTCTTAACGCCTCCTCTTCTTTGTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAG-ATCTTGTTAGGCA-CACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGC</genome_strand>
        <mrna_strand>CACATATTG-AAAAGCTAGGTTTTAGCTC-TAACGCCTCCTCTTCTTTGTGGAGTGTATACTCCAAACCGGCCGAGACGACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGAATCTTGTTAGGCACCACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGCGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313744" ref_strand="+" ref_description="SGN-E313744 [cTOA-17-O14]">
      <seq>tccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggattcagagatcttgttaggcacacaatgtttgagaaaggacaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6105" stop="4243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5805" g_stop="5634" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="306" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="436" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4543" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="538" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E313744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5805" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTA</genome_strand>
        <mrna_strand>TCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483344" ref_strand="+" ref_description="SGN-E483344 [cSTE-9-C3]">
      <seq>ccgaccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgcaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgccgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactataatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattntgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6239" stop="4258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5939" g_stop="5634" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="440" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="570" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4558" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="657" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E483344" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5939" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTG</genome_strand>
        <mrna_strand>CCGACCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGCAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGCCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTATAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTNTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484792" ref_strand="+" ref_description="SGN-E484792 [cSTE-15-E4]">
      <seq>gggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattcagagatcttgttaggcacacaatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6098" stop="4258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5798" g_stop="5634" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="299" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="429" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4558" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="516" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E484792" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5798" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTG</genome_strand>
        <mrna_strand>GGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413128" ref_strand="+" ref_description="SGN-E413128 [STM-17-K14]">
      <seq>aaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacgaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctncatggatgaaaatgcagatggattcagagatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6241" stop="4277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5941" g_stop="5634" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="442" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="572" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4577" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="640" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E413128" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5941" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTT</genome_strand>
        <mrna_strand>AACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTNCATGGATGAAAATGCAGATGGATTCAGAGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481369" ref_strand="+" ref_description="SGN-E481369 [cSTD-17-P16]">
      <seq>tccaaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtattatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacgaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaaaaaggttgatgtgtctcatgatgattttgaagacaacatggtgctagcacctccatggatgaaaatgcagatggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6245" stop="4286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5945" g_stop="5634" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="447" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="577" r_length="130" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4586" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="635" r_length="58" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E481369" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5945" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTA-TATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTC</genome_strand>
        <mrna_strand>TCCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATTATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAAAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGAC-AACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455792" ref_strand="+" ref_description="SGN-E455792 [cSTS-27-I4]">
      <seq>ccaaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacgaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctntccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagaacaacatggtgctagcacctncatggatgaaaatgcagatggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6243" stop="4286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5944" g_stop="5634" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="445" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="575" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4586" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="634" r_length="59" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E455792" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5944" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTC</genome_strand>
        <mrna_strand>CCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTNTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGAACAACATGGTGCTAGCACCTNCATGGATGAAAATGCAGATGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487358" ref_strand="+" ref_description="SGN-E487358 [cSTE-25-E2]">
      <seq>cgagacgactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacnaacatggtgctagcacctccatggatgaaaatgcagatggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6234" stop="4286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5934" g_stop="5634" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="435" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="565" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4586" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="624" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E487358" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5934" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTC</genome_strand>
        <mrna_strand>CGAGACGACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACNAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479261" ref_strand="+" ref_description="SGN-E479261 [cSTD-9-E4]">
      <seq>cgttaatcgccgattcctaaaccctagttttgttcttcgtctctcggagatggcgatgatgatagagaggtcggtgatatgtatcgggatagccaaagcattccttggacctccaaagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagaagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6214" stop="4286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5914" g_stop="5634" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="417" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="547" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4586" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="606" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E479261" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5914" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGA-ATGTATCGGGAAAGCCAAAGCATTCATTGGA-CTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAG-AGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTC</genome_strand>
        <mrna_strand>CGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTCTCTCGGAGATGGCGATGATGATAGAGAGGTCGGTGATATGTATCGGGATAGCCAAAGCATTCCTTGGACCTCCAA-AGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320412" ref_strand="+" ref_description="SGN-E320412 [cTOB-22-O22]">
      <seq>ccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgctgatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6239" stop="4287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5939" g_stop="5634" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="440" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="570" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4587" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="628" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E320412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5939" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATT</genome_strand>
        <mrna_strand>CCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560682" ref_strand="+" ref_description="SGN-E560682 [20375]">
      <seq>cgagacgactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgcaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaatcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagcaaggttgatgtgtctcatgatgattctgaagacaaacatggtgctagcacctccatggatgaaaatgcagatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6234" stop="4287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5934" g_stop="5634" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="436" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="567" r_length="131" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4587" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="625" r_length="58" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E560682" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5934" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTG-AATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAG-AAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATT</genome_strand>
        <mrna_strand>CGAGACGACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGCAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAATCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGCAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTCTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487381" ref_strand="+" ref_description="SGN-E487381 [cSTE-25-I2]">
      <seq>cgagacgactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacnaacatggtgctagcacctccatggatgaaaatgcagatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6234" stop="4289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5934" g_stop="5634" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="435" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="565" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4589" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="621" r_length="56" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E487381" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5934" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGA</genome_strand>
        <mrna_strand>CGAGACGACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACNAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442117" ref_strand="+" ref_description="SGN-E442117 [cSTA-32-C11]">
      <seq>ccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatgcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6205" stop="4293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5905" g_stop="5634" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="406" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="536" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4593" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="588" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E442117" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5905" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGA</genome_strand>
        <mrna_strand>CCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483482" ref_strand="+" ref_description="SGN-E483482 [cSTE-9-H21]">
      <seq>gtcagcgccgccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaagttgatgtgtctcatgatgattntgaagacaacatggtgctagcacctccatggatgaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6093" stop="4296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5793" g_stop="5634" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="294" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="424" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4596" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="472" r_length="48" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E483482" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5793" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGC</genome_strand>
        <mrna_strand>GTCAGCGCCGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAAGTTGATGTGTCTCATG....................................................................................................................ATGATTNTGAAGAC-AACATGGTGCTAGCACCTCCATGGATGAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473710" ref_strand="+" ref_description="SGN-E473710 [cSTB-33-K6]">
      <seq>tccaaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacgaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaagttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6245" stop="4297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5945" g_stop="5634" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="446" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="576" r_length="130" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4597" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="624" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E473710" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5945" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATG</genome_strand>
        <mrna_strand>TCCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAAGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440062" ref_strand="+" ref_description="SGN-E440062 [cSTA-14-H24]">
      <seq>ccggccgagacgactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccacactcggctttccagtaactacaatgttatactaaaagaaaggaagctgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6239" stop="4297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5939" g_stop="5634" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="440" r_length="134" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="570" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4597" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="618" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E440062" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5939" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATG</genome_strand>
        <mrna_strand>CCGGCCGAGACGACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCACACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGCTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477263" ref_strand="+" ref_description="SGN-E477263 [cSTB-47-N9]">
      <seq>ctgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttgaagacaaacatggtgctagcacctccatggatgaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6226" stop="4297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5926" g_stop="5634" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="427" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="557" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4597" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="605" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E477263" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5926" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATG</genome_strand>
        <mrna_strand>CTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468952" ref_strand="+" ref_description="SGN-E468952 [cSTB-9-J2]">
      <seq>cctcgtgccgaaaccggccgagacgactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6242" stop="4457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5942" g_stop="5634" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="319" r_length="309" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="453" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="583" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4636" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="592" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E468952" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5942" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTTG</genome_strand>
        <mrna_strand>AAACCGGCCGAGACGACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452584" ref_strand="+" ref_description="SGN-E452584 [cSTS-17-E6]">
      <seq>tccaaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacgaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggttgatgtgtctcatgatgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6245" stop="4457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5945" g_stop="5634" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="446" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="576" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4637" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="584" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E452584" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5945" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTTT</genome_strand>
        <mrna_strand>TCCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205947" ref_strand="+" ref_description="SGN-E205947 [cLEC-20-K17]">
      <seq>aaaccggcctagacgactgaggtattaacgttaatcgccgggtcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttaatgaagaaggttgatgtgtctcatgatgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6242" stop="4457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5942" g_stop="5634" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="443" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="573" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4644" g_stop="4638" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="580" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E205947" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5942" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
          <exon e_start="4644" e_stop="4638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGGTATGAATTGAGAAGTATCTTCTGACTTTTAAATTCATGTAGAAGTTGATCTTTGTTTACTAATCACTTAAGTAGCTATTTTGCTTCAACAAAGATTTGTTTTGAATTTTTGGCAGATGATTT</genome_strand>
        <mrna_strand>AAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGGGTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAATGAAGAAGGTTGATGTGTCTCATG....................................................................................................................ATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482788" ref_strand="+" ref_description="SGN-E482788 [cSTE-5-I4]">
      <seq>aagactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagaagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagaatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccanaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaagttgatgtgtctcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6230" stop="4459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5930" g_stop="5634" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="433" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="563" r_length="130" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E482788" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5930" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAG-AGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAG-ATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG</genome_strand>
        <mrna_strand>AAGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGAATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCANAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAAGTTGATGTGTCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469097" ref_strand="+" ref_description="SGN-E469097 [cSTB-10-O6]">
      <seq>gttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaaggtgatgtgtctcatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6213" stop="4459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5913" g_stop="5634" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="414" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="544" r_length="130" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E469097" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5913" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG</genome_strand>
        <mrna_strand>GTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAAGGTGATGTGTCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411578" ref_strand="+" ref_description="SGN-E411578 [STM-14-N6]">
      <seq>gttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttatggcattagattatgaagctttagtgaagaaggntgatgtgtctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6213" stop="4461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5913" g_stop="5634" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="414" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4761" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="544" r_length="130" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E411578" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5913" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG</genome_strand>
        <mrna_strand>GTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGNTGATGTGTCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562192" ref_strand="+" ref_description="SGN-E562192 [632]">
      <seq>ttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtacaagttcatcttcttgacaacgagccctttcgctgatgctttttggaccaaaaacaaagaggaaacgcccgaaacttatgggcattagattatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6187" stop="4493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5887" g_stop="5634" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="388" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4793" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="489" r_length="101" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E562192" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E562192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5887" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTT-GCTGATGC-TTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTAT-GGCATTAGATTATGA</genome_strand>
        <mrna_strand>TTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTACAAGTTCATCTTCTTGACAACGAGCCCTTTCGCTGATGCTTTTTGGACCAAAAACAAAGAGGAAACGCCCGAAACTTATGGGCATTAGATTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249811" ref_strand="+" ref_description="SGN-E249811 [cLEF-57-J18]">
      <seq>aaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6241" stop="4508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5941" g_stop="5634" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="442" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4808" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="525" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E249811" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5941" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTAT</genome_strand>
        <mrna_strand>AACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247188" ref_strand="+" ref_description="SGN-E247188 [cLEF-46-P18]">
      <seq>cggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaaacaaagaggaaacgccccaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6238" stop="4509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5938" g_stop="5634" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="439" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4809" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="521" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E247188" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5938" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTA</genome_strand>
        <mrna_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437613" ref_strand="+" ref_description="SGN-E437613 [cSTA-4-K8]">
      <seq>ccaaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttggaccaaaaacaaagaggaaacgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6243" stop="4516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5944" g_stop="5634" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="445" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4816" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="520" r_length="75" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E437613" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5944" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCC</genome_strand>
        <mrna_strand>CCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264501" ref_strand="+" ref_description="SGN-E264501 [cLEG-67-K1]">
      <seq>cggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtccctttttaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttggaccaaaacaaagaggaaacgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6238" stop="4517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5938" g_stop="5634" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="439" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4817" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="512" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E264501" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5938" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCC</genome_strand>
        <mrna_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTTAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACC-AAAACAAAGAGGAAACGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263993" ref_strand="+" ref_description="SGN-E263993 [cLEG-64-N11]">
      <seq>cggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttttngacccaaaaccaagaggaaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6238" stop="4519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5938" g_stop="5634" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="439" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4819" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="511" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E263993" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5938" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGC</genome_strand>
        <mrna_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTNGACCCAAAACCAAGAGGAAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367315" ref_strand="+" ref_description="SGN-E367315 [cLPT-5-L22]">
      <seq>tccaaaccggcctatacgactgaggtattaacgttaatcgccgattcctaaaccctaattttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccgaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtgggcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtgactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtgaaagttcatcttcttgacaatgagccattcgctgatgcttttggaccaaaaacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6245" stop="4528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5945" g_stop="5634" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="446" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4828" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="509" r_length="63" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E367315" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5945" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAG</genome_strand>
        <mrna_strand>TCCAAACCGGCCTATACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAATTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCGAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGGCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTGACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTGAAAGTTCATCTTCTTGACAATGAGCCATTCGCTGATGCTTTTGGACCAAAAACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582078" ref_strand="+" ref_description="SGN-E582078 [7711]">
      <seq>ctccaaaccggccgagacgactgaggtataaacgttaatcgtcgattcctaaagccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaacaaggaaaggaagttgcccatgtcccttttaacatgatcatcagaagcaagtaaaagttcatcttcttgaccaacggagcctttcgctgatgcttttggaccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6246" stop="4533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5946" g_stop="5634" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="451" r_length="137" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.87"/>
            <acceptor a_prob="0.976" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4833" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="511" r_length="60" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E582078" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5946" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAA-CCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAA-AA-GAAAGGAAGTTGCCCATGTCCCTTTTAA-ATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGA-CAA-TGAGCCATTTGCTGATGCTTTTGGACCAAAAA</genome_strand>
        <mrna_strand>CTCCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGTCGATTCCTAAAGCCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAACAAGGAAAGGAAGTTGCCCATGTCCCTTTTAACATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACCAACGGAGCCTTTCGCTGATGCTTTTGGACCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442230" ref_strand="+" ref_description="SGN-E442230 [cSTA-32-K14]">
      <seq>aaccggccgagacgactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgcttttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6241" stop="4539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5941" g_stop="5634" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="442" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4839" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="494" r_length="52" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E442230" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5941" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGAC</genome_strand>
        <mrna_strand>AACCGGCCGAGACGACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301598" ref_strand="+" ref_description="SGN-E301598 [cLEW-23-L14]">
      <seq>accggctctagacgactgaggtattaacggggatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgctttttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6240" stop="4540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5940" g_stop="5634" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="442" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4840" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="494" r_length="52" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E301598" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5940" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGC-CTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGC-TTTTGGA</genome_strand>
        <mrna_strand>ACCGGCTCTAGACGACTGAGGTATTAACGGGGATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437061" ref_strand="+" ref_description="SGN-E437061 [cSTA-2-F23]">
      <seq>ccgaccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgcaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgccgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactataatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6239" stop="4542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5939" g_stop="5634" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="440" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4842" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="489" r_length="49" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E437061" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5939" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTG</genome_strand>
        <mrna_strand>CCGACCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGCAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGCCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTATAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467900" ref_strand="+" ref_description="SGN-E467900 [cSTB-2-E19]">
      <seq>cgaggtccaaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaacccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacgaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctgatgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6245" stop="4543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5950" g_stop="5634" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="452" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4843" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="500" r_length="48" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E467900" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5950" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAA-CCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTT</genome_strand>
        <mrna_strand>CGAGGTCCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGATGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440695" ref_strand="+" ref_description="SGN-E440695 [cSTA-18-F6]">
      <seq>aatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtaccaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctgatgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6210" stop="4543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5910" g_stop="5634" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="412" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4843" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="460" r_length="48" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E440695" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5910" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTA-CAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTT</genome_strand>
        <mrna_strand>AATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACCAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGATGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300966" ref_strand="+" ref_description="SGN-E300966 [cLEW-8-N11]">
      <seq>tggagtgtgtactacaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatctgcttgacaatgagccatttgctgatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6257" stop="4544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5957" g_stop="5634" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="458" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4844" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="505" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E300966" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5957" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTT</genome_strand>
        <mrna_strand>TGGAGTGTGTACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467398" ref_strand="+" ref_description="SGN-E467398 [cSTB-48-N1]">
      <seq>ccaaaccggccgagactactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacgaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaacgagcctttcgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6243" stop="4550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5944" g_stop="5634" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="445" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4850" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="486" r_length="41" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E467398" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5944" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGA</genome_strand>
        <mrna_strand>CCAAACCGGCCGAGACTACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAACGAGCCTTTCGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400250" ref_strand="+" ref_description="SGN-E400250 [cSTC-6-C9]">
      <seq>ccggccgagactactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgacaatgagcctttcgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6239" stop="4550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5939" g_stop="5634" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="440" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4850" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="481" r_length="41" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E400250" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5939" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGA</genome_strand>
        <mrna_strand>CCGGCCGAGACTACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGACAATGAGCCTTTCGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439773" ref_strand="+" ref_description="SGN-E439773 [cSTA-13-B23]">
      <seq>tccaaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaatgatcatcagaagcaagtaaaagttcatcttcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6245" stop="4834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5945" g_stop="5634" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5156" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="446" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4890" g_stop="4867" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="470" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E439773" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5945" e_stop="5634"/>
          <exon e_start="5289" e_stop="5156"/>
          <exon e_start="4890" e_stop="4867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAGGTATGGGAGATTCTTTTTCCTTAGTTTTATTATTTAACAACTTGTTCTTATGTTCCTGCTGAGTCACCGTGAATCTCTTTACTCTGCTATTGTAATTCTAATGTGCACTCATTATTGTATGATTTGGGGGCTTCCTGTGATACGCACATGTACTATTTGTGTGTGTATAGAATAACTTGGCAAATTGAGGCTAAATCTTGTTGCTTTATGCTTCATACTGGATTTGTTTGCTAATATTTTTCTCTTTTTCTCTTTTTGATTAAAGCAAGTAAAAGTTCATCTGCTTGAC</genome_strand>
        <mrna_strand>TCCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG.........................................................................................................................................................................................................................................................................CAAGTAAAAGTTCATCTTCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269760" ref_strand="+" ref_description="SGN-E269760 [cLEM-17-H8]">
      <seq>acaaaccggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcacgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactggagttttttagagaagagctccaaactcggctttccagtaactacaatgttatattaaaagaaaggaagttgcccatgtcccttttaaaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6244" stop="4865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5944" g_stop="5634" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5165" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="437" r_length="126" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E269760" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5944" e_stop="5634"/>
          <exon e_start="5289" e_stop="5165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTT-AAATGAT</genome_strand>
        <mrna_strand>ACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443832" ref_strand="+" ref_description="SGN-E443832 [cSTA-40-O23]">
      <seq>tccaaaccggccgagacgactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagaagagctccaaactcggctttccagtaactacaatgttatactaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6245" stop="4897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5945" g_stop="5634" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5197" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="405" r_length="93" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E443832" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5945" e_stop="5634"/>
          <exon e_start="5289" e_stop="5197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAG</genome_strand>
        <mrna_strand>TCCAAACCGGCCGAGACGACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATACTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471292" ref_strand="+" ref_description="SGN-E471292 [cSTB-23-D1]">
      <seq>tccaaaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgctactgtgcggtggctcaagatgtacaatacgaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgtcatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactgcagttctttagagaagagctccaaactcggctttccagtaactacaatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6245" stop="4905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5945" g_stop="5634" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5205" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="397" r_length="85" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E471292" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5945" e_stop="5634"/>
          <exon e_start="5289" e_stop="5205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTAT</genome_strand>
        <mrna_strand>TCCAAACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGTGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGTCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGCAGTTCTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471727" ref_strand="+" ref_description="SGN-E471727 [cSTB-25-C22]">
      <seq>aaccggccgagacgactgaggtataaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacgaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggcactggagttctttagagaagagctccaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6241" stop="4930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5941" g_stop="5634" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5230" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="368" r_length="60" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E471727" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5941" e_stop="5634"/>
          <exon e_start="5289" e_stop="5230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTC</genome_strand>
        <mrna_strand>AACCGGCCGAGACGACTGAGGTATAAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGCACTGGAGTTCTTTAGAGAAGAGCTCCAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485094" ref_strand="+" ref_description="SGN-E485094 [cSTE-16-D11]">
      <seq>ccaaaccggccgagacgactgaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtcgttggttcggtaatactcgggtggtcaaccagaaggaactagagttctttagagagagctcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6243" stop="4932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5944" g_stop="5634" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5232" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="367" r_length="56" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E485094" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5944" e_stop="5634"/>
          <exon e_start="5289" e_stop="5232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAAC</genome_strand>
        <mrna_strand>CCAAACCGGCCGAGACGACTGAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAAGGAACTAGAGTTCTTTAGAG-AGAGCT-CAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447192" ref_strand="+" ref_description="SGN-E447192 [cSTA-25-M23]">
      <seq>gctgcaggaattcgggcgaggtatactccaaaccggccgttattactgaggtataaacgttaatcgccgggtcctaatccctagttttgttcttcgcccctcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcgtctttggttcggtaatactcgggtggtcaaccagaacgcactggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6227" stop="4954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5952" g_stop="5634" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="338" r_length="319" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5289" g_stop="5254" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="374" r_length="36" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E447192" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5952" e_stop="5634"/>
          <exon e_start="5289" e_stop="5254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTATGTTCTGAAAAGTTTCACACTTTTCACTTCTACGTTCTTACTAATTACAAAATATAGTCTTTTGCCAGCAGAGATAATTTGTAGTACTCCTGTAGTTTGTGTTTCTGAAGATTAATTTGACAACCTGACTTAATTAGGTTGCTGAAATCTATTTAGAATTGGCGTTGGGTTAGTGCGGAAGTGTTAATATTGAGGTGGAGGGAGTATTAATGATTAAATTGAGCTGAATTTTTTATTTTCATCGTTAAAAATGTCATCTTTGGTTAGTTGATGCTACTTTTCGTGTATGACTGAATTTTGTTGAAATAATTGAATTGGGAATTTATTTTCCAACTTCACAGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGT</genome_strand>
        <mrna_strand>GGTATACTCCAAACCGGCCGTTATTACTGAGGTATAAACGTTAATCGCCGGGTCCTAATCCCTAGTTTTGTTCTTCGCCCCTCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCTTTGGTTCG........................................................................................................................................................................................................................................................................................................................................................GTAATACTCGGGTGGTCAACCAGAACGCACTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440236" ref_strand="+" ref_description="SGN-E440236 [cSTA-16-C15]">
      <seq>gaggtataaacgctaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggccgaagcgtaatcctcagggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaaccagatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6224" stop="5345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5924" g_stop="5645" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E440236" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5924" e_stop="5645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCG</genome_strand>
        <mrna_strand>GAGGTATAAACGCTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580548" ref_strand="+" ref_description="SGN-E580548 [5791]">
      <seq>tgtatactcgaaaccggccgagacgactgaggtataagacgttaatcgccgattcctaaaccctagttttcggcttcgtactgatccggagatggcgaagaacgaaagagaggtccggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcggcgcagccaaaaatggccgtagcgccgttactgtgcggcggctcaagatgtacaatacgaggccgaagcgtaatcctcaggggtcacataattaagcatgacttacaatcaaaggagctgccatcaacaaggatacaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6252" stop="5350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5952" g_stop="5650" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E580548" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5952" e_stop="5650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATACTACAAACCGGCCTAGACGACTGAGGTATTA-ACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTA-T-AT-CGGAGATGGCGAAGAA-GAAAGAGAGGT-CGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCA-GGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCA</genome_strand>
        <mrna_strand>TGTATACTCGAAACCGGCCGAGACGACTGAGGTATAAGACGTTAATCGCCGATTCCTAAACCCTAGTTTTCGGCTTCGTACTGATCCGGAGATGGCGAAGAACGAAAGAGAGGTCCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCGGCGCAGCCAAAAATGGCCGTAGCGCCGTTACTGTGCGGCGGCTCAAGATGTACAATACGAGGCCGAAGCGTAATCCTCAGGGGTCACATAATTAAGCATGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442760" ref_strand="+" ref_description="SGN-E442760 [cSTA-34-J6]">
      <seq>ctccaaaccgaccgagacgactgaggtataaacgttgatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattccttggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaataccaggnccgaagncgcaatcctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6246" stop="5410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5946" g_stop="5710" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E442760" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5946" e_stop="5710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGG-CCGAAG-CGTAATCCTCAG</genome_strand>
        <mrna_strand>CTCCAAACCGACCGAGACGACTGAGGTATAAACGTTGATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCCTTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGNCCGAAGNCGCAATCCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286374" ref_strand="+" ref_description="SGN-E286374 [cLES-11-H9]">
      <seq>cggcctagacgactgaggtattaacgttaatcgccgattcctaaaccctagttttgttcttcgtatatcggagatggcgaagaagaaagagaggtcggtgaatgtatcgggaaagccaaagcattcattggactccaatagggatgtcagcgcagccaaaaatggccgtagcgccgctactgtgcggcggctcaagatgtacaatacccagccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="-" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="6238" stop="5424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5938" g_stop="5724" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="-" ref_id="SGN-E286374" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5938" e_stop="5724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGA</genome_strand>
        <mrna_strand>CGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCCAGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473102" ref_strand="+" ref_description="SGN-E473102 [cSTB-31-K17]">
      <seq>cttcgccagtaaatttggtgtctttcctagttggacatttttgtctgtaaatcttttttttttttctgtgccttgctcgttaatctttaatactaaattctccagtcagcatttcggtttattaaagctttaaacttttagtcgctttcctcttttcccacttctatataaaagaaaaaaattccactattggactgtttcttgacctagttttagcttaatttcttgtttaacaaggcccccacaactcaattttcattcatagatcctatatttgctcaaatttgtgtttataaagatcctatctttgtggggttttggtgttttttcttgtaattggctagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="14493" stop="15435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14791" g_stop="15136" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E473102" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14791" e_stop="15136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCCTGTAA-TTTGGTGTCTTTCCTAGTTGGACATTTTTGTCTGTAAATC--TTTTTTTTTTCTCTGCCTTGCTTGTTAATCTTTAATACTTTATTCTTCAGTCAGCATTTTGGTTTATTAAAGCTTT-AACTTTTAGTCGCTTTCATCTTTTTGCCACTTCTATAT-AAAGAAAAAAATTCCACTATTAGACTGTTTCTTTACCTACTTTTAGCTTAATTTCTTGTTTATCAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAG</genome_strand>
        <mrna_strand>CTTCGCCAGTAAATTTGGTGTCTTTCCTAGTTGGACATTTTTGTCTGTAAATCTTTTTTTTTTTTCTGTGCCTTGCTCGTTAATCTTTAATACTAAATTCTCCAGTCAGCATTTCGGTTTATTAAAGCTTTAAACTTTTAGTCGCTTTCCTC-TTTTCCCACTTCTATATAAAAGAAAAAAATTCCACTATTGGACTGTTTCTTGACCTAGTTTTAGCTTAATTTCTTGTTTAACAAGGCCCCCACAACTCAATTTTCATTCATAGATCCTATATTTGCTCAAATTTGTGTTTATAAAGATCCTATCTTTGTGGGGTTTTGGTGTTTTTTCTTGTAATTGGCTAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263158" ref_strand="+" ref_description="SGN-E263158 [cLEG-62-C10]">
      <seq>caaggacccctcaactcaattttcattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtngggttttggagttttttcttgtaatttggtagaaaaagagtttaattttgttttgtttgttcaagtttgtgttttggggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="14720" stop="15479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15020" g_stop="15179" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E263158" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15020" e_stop="15179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTT</genome_strand>
        <mrna_strand>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTNGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425849" ref_strand="+" ref_description="SGN-E425849 [STM-45-N7]">
      <seq>gcccccacaactcaattacctattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtggggttttggagttttttcttgtaatttgctagaaaaaaatttaattctgttttgtttgttcaagtttgtgctttggggttattgtttcttgatgatttatttcgacttagattataagatttccccgccaagtccttcattttcttattcaatttcatcgaattttcttacatctgatattttcttgataaagtgtgttgattgtttccattttcgtataaaagattgtttttgtgaagggaaaatgggggatcgtttaaggtcaacttcaatggaggatttgccagtacatttgattcttgaaatattgttgtcgggtcgattagctgttattgatttaataagcttagagctaacttcaaggacttttaggggaacacatggtttgtttcctaaaaagttcaagtctttggtagattatgctgcttttcagctttgtggattgagttcaatctatgcttctttgcattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="14724" stop="15871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15024" g_stop="15571" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E425849" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15024" e_stop="15571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCCTCAACTCAATTTTC-ATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGT</genome_strand>
        <mrna_strand>GCCCCCACAACTCAATTACCTATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGCTAGAAAAA-AATTTAATTCTGTTTTGTTTGTTCAAGTTTGTGCTTTGGGGTTATTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCGCCAAGTCCTTCATTTTCTTATTCAATTTCATCGAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTGATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTAAGGTCAACTTCAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGTTGTCGGGTCGATTAGCTGTTATTGATTTAATAAGCTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542728" ref_strand="+" ref_description="SGN-E542728 [TUS-64-C21]">
      <seq>attttcattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtggggttttggagttttttcttgtaatttggtagaaaaagagtttaattttgttttgtttgttcaagtttgtgttttggggttgttgtttcttgatgatttatttcgacttagattataagatttccccaccaagtccttcattttcttattcaatttcatcaaattttcttacatctgatattttcttgataaagtgtgttaattgtttccattttcgtataaaagattgtttttgtgaagggaaaatgggggatcgtttgaggtcaactttaatggaggatttgccagtacatttgattcttgaaatattgatgtgcggtcgattagctgttattgatttaataagtttagagctaacttcaaggacttttaggggaacacatggtttgtttcctaaaaagttcaagtctttggtagattatgctgcttttcagctttgtggattgagttcaatctatgcttctttgcattgtaatgctcaggaagagctgttgacgcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggcaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="14738" stop="16661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15038" g_stop="15682" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15683" i_stop="16219" i_length="537">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16220" g_stop="16361" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="787" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E542728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15038" e_stop="15682"/>
          <exon e_start="16220" e_stop="16361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTG</genome_strand>
        <mrna_strand>ATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301706" ref_strand="+" ref_description="SGN-E301706 [cLEW-23-P24]">
      <seq>ttttcattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtggggttttggagttttttcttgtaatttggtagaaaaagagtttaattttgttttgtttgttcaagtttgtgttttggggttgttgtttcttgatgatttatttcgacttagattataagatttccccaccaagtccttcattttcttattcaatttcatcaaattttcttacatctgatattttcttgataaagtgtgttaattgtttccattttcgtataaaagattgtttttgtgaatggaaaatgggggatcgtttgaggtcaactttaatggaggatttgccagttcatttgattcttgaaatattgatgtgcggtcgattagctgttattgattttataagtttagagctaacttcaaagacttttaagggaacacatggtttggttcctaaaaagttcaagtctttggtagattatgctgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="14739" stop="15828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15039" g_stop="15528" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E301706" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15039" e_stop="15528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTT</genome_strand>
        <mrna_strand>TTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAATGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTTCATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTTATAAGTTTAGAGCTAACTTCAAAGACTTTTAAGGGAACACATGGTTTGGTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424319" ref_strand="+" ref_description="SGN-E424319 [STM-43-K14]">
      <seq>aaaaagtttaattttgtttgtttgttcaagtttgtgctttggggttattgtttcttgatgatttatttcgacttagattataagatttccccgccaagtccttcattttcttattcaatttcatcgaattttcttacatctgataatttcttgataaagtgtgttgattgtttccattttcgtttaaaagattgtttttgtgaagggaaaatgggggatcgtttgaggtcaacttcaatggaggatttgccagtacatttgattcttgaaatattgatgtcgggtcgattagctgttattgatttaataagtttagagctaacttcaaggacttttaggggaacacatggtttgtttcctaaaaagttcaagtctttggtagattatgctgcttttcagctttgtggattgagttcaatctatgcttctttgcattgtaatgctcaggaagagctgttgaagcgatgtaacggcaattggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="14833" stop="15917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15133" g_stop="15617" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E424319" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15133" e_stop="15617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGC</genome_strand>
        <mrna_strand>AAAAAGTTTAATTTTG-TTTGTTTGTTCAAGTTTGTGCTTTGGGGTTATTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCGCCAAGTCCTTCATTTTCTTATTCAATTTCATCGAATTTTCTTACATCTGATAATTTCTTGATAAAGTGTGTTGATTGTTTCCATTTTCGTTTAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTCAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTCGGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGAAGCGATGTAACGGCAATTGGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452162" ref_strand="+" ref_description="SGN-E452162 [cSTS-15-H24]">
      <seq>aaaaagttaattttgtttgtttgttcaagtttgtgctttggggttattgtttcttgatgatttatttcgacttagattataagatttccccgccaagtccttgattttcttattcaatttcatcgaattttcttacatctgataatttcttgataaagtgtgttgattgtttccattttcgtttaaaagattgtttttgtgaagggaaaatgggggatcgtttgaggtcaacttcaatggaggatttgccagcacatttgattcttgaaatattgatgtcgggtcgattagctgttattgattgaatgagttgagagctaacttgagggacttgtaggggaacacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="14833" stop="15782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15133" g_stop="15482" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E452162" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15133" e_stop="15482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATG</genome_strand>
        <mrna_strand>AAAAAGT-TAATTTTG-TTTGTTTGTTCAAGTTTGTGCTTTGGGGTTATTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCGCCAAGTCCTTGATTTTCTTATTCAATTTCATCGAATTTTCTTACATCTGATAATTTCTTGATAAAGTGTGTTGATTGTTTCCATTTTCGTTTAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTCAATGGAGGATTTGCCAGCACATTTGATTCTTGAAATATTGATGTCGGGTCGATTAGCTGTTATTGATTGAATGAGTTGAGAGCTAACTTGAGGGACTTGTAGGGGAACACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430132" ref_strand="+" ref_description="SGN-E430132 [STM-53-O1]">
      <seq>atggtttgtttcctaaaaagttcaagtctttggtagattatgctgcttttcagctttgtggattgagttcaatctatgcttctttgcattgtaatgctcaggaagagctgttgaagcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggaaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcccaagtttcagcttcgcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcatactgttgtgggcatagcgacaccgggcgcccaatcttcacgccaagaatggttgaagcattgaaaaatattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="15180" stop="17651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15480" g_stop="15682" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15683" i_stop="16219" i_length="537">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16220" g_stop="16429" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="413" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16430" i_stop="17249" i_length="820">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17250" g_stop="17351" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="515" r_length="102" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E430132" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15480" e_stop="15682"/>
          <exon e_start="16220" e_stop="16429"/>
          <exon e_start="17250" e_stop="17351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATATATTGACTTTGAAAAATGCAAGAACTGCCACACCATGCCACTCTGCAAAAAATAATTCTTACTATTTTAGTATGAGTTGGACCTAAAACTTACCGGCATGGTGTGGTCAATAAAATGGGGCTAACCTTAGAGACTATTAACAAAAAATACTCGGTGAATTCTTCCTATTTGCTTAAGCTTTAGTATACAATGTTAGTCGATACTTCTATGTTTCTATCTAAGTGCTGATCAAATACTTCTGCTCACTTTTTCCTATCCCTTCTGGGGAAAATCAGTCATCATTCTGCCAATTTGTAATGGCTAGTGCTACTGCAATAAAATAAGATAGAAAAAAAATTTATATTTCGAGCAGATTGATGCACCTTACGATGAGAGAGCCTCTCAAGTTTTGTACCGCTTAGACATATCCCTTACGAAAGTCCACAGTAGGTTGCAATATTCGAAGTGTGTTAGAGAATCATTCTCTGTTGTAAATATGCTAAAAACTGCCATGTTTTGTCTACTTCTACAACATAGAATGTATATACATACTATTGCATTTTATATTATTCATGAGGTTTACAATTCTTGGTATAGGTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCT</genome_strand>
        <mrna_strand>ATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGAAGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCCCAAGTTTCAGCTTCGCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCACATGTGGAGATAACTCATCATACTGTTGTGGGCATAGCGACACCGGGCGCCCAATCTTCACGCCAAGAATGGTTGAAGCATTGAAAAATATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461221" ref_strand="+" ref_description="SGN-E461221 [cPRO-7-P5]">
      <seq>atggtttgtttcctaaaaagttcaagtctttggtagattatgctgcttttcagctttgtggattgagttcaatctatgcttctttgcattgtaatgctcaggaagagctgttgaagcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggaaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcccaagtttcagcttcgcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="15180" stop="16760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15480" g_stop="15682" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15683" i_stop="16219" i_length="537">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16220" g_stop="16429" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="413" r_length="210" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E461221" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15480" e_stop="15682"/>
          <exon e_start="16220" e_stop="16429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG</genome_strand>
        <mrna_strand>ATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGAAGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCCCAAGTTTCAGCTTCGCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242253" ref_strand="+" ref_description="SGN-E242253 [cLED-37-H20]">
      <seq>tcaatctatgcttctttgcattgtaatgctcaggaagagctgttgacgcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggcaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcgcaagtttcagcttctcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcattctgttgtgggcatagagacactggacgcccaatcttcaggccaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="15248" stop="17627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15548" g_stop="15682" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15683" i_stop="16219" i_length="537">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16220" g_stop="16429" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="345" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16430" i_stop="17249" i_length="820">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17250" g_stop="17327" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="423" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E242253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15548" e_stop="15682"/>
          <exon e_start="16220" e_stop="16429"/>
          <exon e_start="17250" e_stop="17327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATATATTGACTTTGAAAAATGCAAGAACTGCCACACCATGCCACTCTGCAAAAAATAATTCTTACTATTTTAGTATGAGTTGGACCTAAAACTTACCGGCATGGTGTGGTCAATAAAATGGGGCTAACCTTAGAGACTATTAACAAAAAATACTCGGTGAATTCTTCCTATTTGCTTAAGCTTTAGTATACAATGTTAGTCGATACTTCTATGTTTCTATCTAAGTGCTGATCAAATACTTCTGCTCACTTTTTCCTATCCCTTCTGGGGAAAATCAGTCATCATTCTGCCAATTTGTAATGGCTAGTGCTACTGCAATAAAATAAGATAGAAAAAAAATTTATATTTCGAGCAGATTGATGCACCTTACGATGAGAGAGCCTCTCAAGTTTTGTACCGCTTAGACATATCCCTTACGAAAGTCCACAGTAGGTTGCAATATTCGAAGTGTGTTAGAGAATCATTCTCTGTTGTAAATATGCTAAAAACTGCCATGTTTTGTCTACTTCTACAACATAGAATGTATATACATACTATTGCATTTTATATTATTCATGAGGTTTACAATTCTTGGTATAGGTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATG</genome_strand>
        <mrna_strand>TCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241003" ref_strand="+" ref_description="SGN-E241003 [cLED-24-D24]">
      <seq>tcaatctatgcttctttgcattgtaatgctcaggaagagctgttgacgcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggcaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcgcaagtttcagcttctcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="15248" stop="16756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15548" g_stop="15682" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15683" i_stop="16219" i_length="537">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16220" g_stop="16429" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="345" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E241003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15548" e_stop="15682"/>
          <exon e_start="16220" e_stop="16429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG</genome_strand>
        <mrna_strand>TCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210073" ref_strand="+" ref_description="SGN-E210073 [cLEC-40-E2]">
      <seq>catgggcctgaaacaactcactgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcgcaagtttcagcttctcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcattctgttgtgggcatagagacactggacgcccaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0103N02-hOaws/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0103N02.1" temp_strand="+" temp_description="C07HBa0103N02.1  AC212627.1 htgs_phase:3 submitted_to_sgn_as:gi|158262122|gb|AC212627.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0103N02, complete sequence">
        <position start="16010" stop="17613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16310" g_stop="16429" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16430" i_stop="17249" i_length="820">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17250" g_stop="17313" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="184" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0103N02.1" gen_strand="+" ref_id="SGN-E210073" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>184</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0103N02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16310" e_stop="16429"/>
          <exon e_start="17250" e_stop="17313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATATATTGACTTTGAAAAATGCAAGAACTGCCACACCATGCCACTCTGCAAAAAATAATTCTTACTATTTTAGTATGAGTTGGACCTAAAACTTACCGGCATGGTGTGGTCAATAAAATGGGGCTAACCTTAGAGACTATTAACAAAAAATACTCGGTGAATTCTTCCTATTTGCTTAAGCTTTAGTATACAATGTTAGTCGATACTTCTATGTTTCTATCTAAGTGCTGATCAAATACTTCTGCTCACTTTTTCCTATCCCTTCTGGGGAAAATCAGTCATCATTCTGCCAATTTGTAATGGCTAGTGCTACTGCAATAAAATAAGATAGAAAAAAAATTTATATTTCGAGCAGATTGATGCACCTTACGATGAGAGAGCCTCTCAAGTTTTGTACCGCTTAGACATATCCCTTACGAAAGTCCACAGTAGGTTGCAATATTCGAAGTGTGTTAGAGAATCATTCTCTGTTGTAAATATGCTAAAAACTGCCATGTTTTGTCTACTTCTACAACATAGAATGTATATACATACTATTGCATTTTATATTATTCATGAGGTTTACAATTCTTGGTATAGGTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCT</genome_strand>
        <mrna_strand>CATGGGCCTGAAACAACTCACTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>121</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6006" PGL_stop="198"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6006" e_stop="5634"/>
            <exon e_start="5289" e_stop="5156"/>
            <exon e_start="4890" e_stop="4761"/>
            <exon e_start="4644" e_stop="4487"/>
            <exon e_start="3990" e_stop="3889"/>
            <exon e_start="3728" e_stop="3624"/>
            <exon e_start="3462" e_stop="3334"/>
            <exon e_start="2743" e_stop="2603"/>
            <exon e_start="1640" e_stop="1540"/>
            <exon e_start="1263" e_stop="1206"/>
            <exon e_start="717" e_stop="198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="0.979"/>
          <exon-intron don_prob="0.993" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="6006" e_stop="5634" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5289" e_stop="5156" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.976">
            <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4890" e_stop="4761" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.886" acc_prob="0.997">
            <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4644" e_stop="4487" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3990" e_stop="3889" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.927" acc_prob="0.990">
            <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3728" e_stop="3624" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.903" acc_prob="0.979">
            <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="3462" e_stop="3334" e_length="129"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="2743" e_stop="2603" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.944">
            <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="1640" e_stop="1540" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="1263" e_stop="1206" e_length="58"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="717" e_stop="198" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6006" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5959" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5958" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5957" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5957" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5953" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5952" stop="5634"/>
              <exon start="5289" stop="5254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5952" stop="5650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5951" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5950" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5946" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
            </gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E440803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4881" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4775" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4642" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4631" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4590" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4579" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3987" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3950" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3903" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3675" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3668" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3667" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3638" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3461" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3420" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3403" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2684" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2681" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262241" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263600" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1610" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692933" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="668" stop="198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="649" stop="217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="631" stop="232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258121" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATATTGAAAAAGCTAGGTTTTAGCTCTTAACGCCTCCTCTTCTTTGTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG : GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG : CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG : ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG : GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG : TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG : GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT : GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG : GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG : GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG : GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGATTGAAGCTTCTTTCTGTTCTATACGA</gDNA_template>
            <first_frame> H  I  L  K  K  L  G  F  S  S  *  R  L  L  F  F  V  E  C  I  L  Q  T  G  L  D  D  *  G  I  N  V  N  R  R  F  L  N  P  S  F  V  L  R  I  S  E  M  A  K  K  K  E  R  S  V  N  V  S  G  K  P  K  H  S  L  D  S  N  R  D  V  S  A  A  K  N  G  R  S  A  A  T  V  R  R  L  K  M  Y  N  T  R  P  K  R  N  P  Q  G  H  I  I  K  H  D  L  Q  S  K  E  L  P  S  T  R  I  Q  P  D  R  R  W  F   : G  N  T  R  V  V  N  Q  K  E  L  E  F  F  R  E  E  L  Q  T  R  L  S  S  N  Y  N  V  I  L  K  E  R  K  L  P  M  S  L  L  N  D  H  Q  K  :  Q  V  K  V  H  L  L  D  N  E  P  F  A  D  A  F  G  P  K  T  K  R  K  R  P  K  L  M  A  L  D  Y  E  A  L  V  K  K  V  D  V  S  H   : D  D  F  E  D  K  H  G  A  S  T  S  M  D  E  N  A  D  G  F  R  D  L  V  R  H  T  M  F  E  K  G  Q  S  K  R  I  W  S  E  L  Y  K  V  I  D  S  S  D  V  V  I  Q  :  V  L  D  A  R  D  P  C  G  T  R  C  Y  H  L  E  K  H  L  K  E  N  C  K  H  K  H  M  V  L  L  L  N  K  :  C  D  L  V  P  A  W  A  T  K  G  W  L  R  V  L  S  R  E  Y  P  T  L  A  F  H  A  S  V  T  K  S  F  G  K  :  G  S  L  L  S  V  L  R  Q  F  S  R  L  K  S  D  K  Q  A  I  S  V  G  F  I  G  Y  P  N  V  G  K  S  S  V  I  N  T  L  R  T  K  N  :  V  C  K  V  A  P  I  P  G  E  T  K  V  W  Q  Y  I  T  L  T  K  R  I  F  L  I  D  C  P  G  V  V  Y  Q  N  H  D  S  E  T  D  I  V  L  K  G  V  :  V  R  V  T  N  L  P  D  A  S  E  H  I  S  E  V  L  N  R  V  K  K  E  H  L  K  R  A  Y  K  I  E  N  W :   V  D  E  Y  D  F  L  Q  Q  L  C  K  S  S  G  K  L  L  K  :  G  G  E  P  D  Y  N  T  A  A  K  M  V  L  H  D  W  Q  R  G  N  I  P  F  F  V  P  P  P  K  L  D  D  E  P  N  E  L  V  A  E  A  D  T  A  V  D  N  D  Q  A  T  A  A  L  K  A  I  A  D  V  V  S  S  Q  Q  L  K  E  V  P  V  Q  E  E  L  F  S  K  A  E  L  L  G  E  N  *  Y  G  R  I  I  L  *  T  C  N  I  H  S  S  G  I  E  F  S  Y  I  V  F  T  I  F  *  L  G  P  L  H  S  Q  S  F  L  V  L  E  E  I  D  I  L  V  E  N  I  D  T  S  Y  F  C  F  N  V  Y  F  E  L  S  V  N  G  N  D  *  Y  H  L  A  Q  L  V  *  D  *  S  F  F  L  F  Y  T  </first_frame>
            <second_frame>  T  Y  *  K  S  *  V  L  A  L  N  A  S  S  S  L  W  S  V  Y  Y  K  P  A  *  T  T  E  V  L  T  L  I  A  D  S  *  T  L  V  L  F  F  V  Y  R  R  W  R  R  R  K  R  G  R  *  M  Y  R  E  S  Q  S  I  H  W  T  P  I  G  M  S  A  Q  P  K  M  A  V  A  P  L  L  C  G  G  S  R  C  T  I  P  G  R  S  V  I  L  R  V  T  *  L  S  T  T  Y  N  Q  R  S  C  H  Q  Q  G  Y  N  Q  I  V  V  G  S  :  V  I  L  G  W  S  T  R  R  N  W  S  F  L  E  K  S  S  K  L  G  F  P  V  T  T  M  L  Y  *  K  K  G  S  C  P  C  P  F  *  M  I  I  R  S :   K  *  K  F  I  C  L  T  M  S  H  L  L  M  L  L  D  Q  K  Q  R  G  N  A  P  N  L  W  H  *  I  M  K  L  *  *  R  R  L  M  C  L  M  :  M  I  L  K  T  N  M  V  L  A  P  P  W  M  K  M  L  M  D  S  E  I  L  L  G  T  Q  C  L  R  K  D  K  V  N  E  F  G  V  S  S  T  K  S  *  T  L  L  M  S  L  F  R :   F  L  M  P  E  T  P  V  V  Q  G  A  T  I  W  R  N  I  *  K  K  I  A  S  T  N  I  W  S  F  C  L  I  S :   V  I  W  S  L  L  G  Q  Q  R  D  G  L  E  C  S  L  G  N  I  Q  L  W  H  F  M  Q  V  S  P  S  P  L  E  R :   V  L  F  C  Q  C  *  D  S  F  L  V  *  R  A  I  S  K  Q  S  L  L  V  L  *  A  I  P  M  L  A  S  H  Q  L  L  I  H  C  A  Q  R  M :   F  A  R  W  L  L  S  Q  E  R  L  K  C  G  S  T  L  H  S  Q  R  G  Y  S  *  L  I  V  L  V  *  F  I  R  I  M  I  P  K  Q  I  *  S  *  R  A  W :   Y  E  *  Q  T  Y  L  M  L  L  N  T  L  A  K  C  *  I  A  L  R  R  S  I  L  K  E  L  I  R  *  R  I   : G  L  T  S  M  T  F  F  N  S  Y  A  S  L  Q  A  N  F  *  R :   E  V  N  L  T  T  I  L  L  P  R  W  F  S  M  I  G  K  E  A  T  F  L  S  L  F  H  L  Q  S  L  M  M  S  Q  M  N  L  S  Q  R  Q  T  Q  P  L  I  T  I  R  P  Q  L  L  S  K  L  L  L  T  S  F  H  H  N  N  *  R  K  F  L  F  R  R  N  Y  L  V  R  L  S  C  W  V  K  T  N  M  G  G  L  S  F  R  L  A  T  S  T  V  L  E  S  S  F  R  I  S  F  L  Q  S  F  S  W  V  H  C  I  P  R  V  F  *  S  *  K  R  L  I  Y  W  S  K  I  *  I  P  R  I  F  V  L  T  F  I  S  N  *  V  L  M  E  M  I  N  I  I  *  L  N  L  F  K  I  E  A  S  F  C  S  I  R </second_frame>
            <third_frame>   H  I  E  K  A  R  F  *  L  L  T  P  P  L  L  C  G  V  Y  T  T  N  R  P  R  R  L  R  Y  *  R  *  S  P  I  P  K  P  *  F  C  S  S  Y  I  G  D  G  E  E  E  R  E  V  G  E  C  I  G  K  A  K  A  F  I  G  L  Q  *  G  C  Q  R  S  Q  K  W  P  *  R  R  Y  C  A  A  A  Q  D  V  Q  Y  Q  A  E  A  *  S  S  G  S  H  N  *  A  R  L  T  I  K  G  A  A  I  N  K  D  T  T  R  S  S  L  V  R :   *  Y  S  G  G  Q  P  E  G  T  G  V  F  *  R  R  A  P  N  S  A  F  Q  *  L  Q  C  Y  I  K  R  K  E  V  A  H  V  P  F  K  *  S  S  E   : A  S  K  S  S  S  A  *  Q  *  A  I  C  *  C  F  W  T  K  N  K  E  E  T  P  Q  T  Y  G  I  R  L  *  S  F  S  E  E  G  *  C  V  S  * :   *  F  *  R  Q  T  W  C  *  H  L  H  G  *  K  C  *  W  I  Q  R  S  C  *  A  H  N  V  *  E  R  T  K  *  T  N  L  E  *  A  L  Q  S  H  R  L  F  *  C  R  Y  S   : G  S  *  C  Q  R  P  L  W  Y  K  V  L  P  F  G  E  T  F  E  R  K  L  Q  A  Q  T  Y  G  P  F  A  *  *   : V  *  F  G  P  C  L  G  N  K  G  M  A  *  S  A  L  *  G  I  S  N  F  G  I  S  C  K  C  H  Q  V  L  W  K   : G  F  S  F  V  S  A  E  T  V  F  S  S  K  E  R  *  A  S  N  L  C  W  F  Y  R  L  S  Q  C  W  Q  V  I  S  Y  *  Y  I  A  H  K  E   : C  L  Q  G  G  S  Y  P  R  R  D  *  S  V  A  V  H  Y  T  H  K  E  D  I  L  D  *  L  S  W  C  S  L  S  E  S  *  F  R  N  R  Y  S  L  E  G  R   : G  T  S  D  K  P  T  *  C  F  *  T  H  *  R  S  V  E  S  R  *  E  G  A  S  *  K  S  L  *  D  R  E  L  :  G  *  R  V  *  L  S  S  T  A  M  Q  V  F  R  Q  T  S  E   : G  R  *  T  *  L  Q  Y  C  C  Q  D  G  S  P  *  L  A  K  R  Q  H  S  F  L  C  S  T  S  K  A  *  *  *  A  K  *  T  C  R  R  G  R  H  S  R  *  *  R  S  G  H  S  C  S  Q  S  Y  C  *  R  R  F  I  T  T  T  E  G  S  S  C  S  G  G  T  I  *  *  G  *  A  V  G  *  K  L  I  W  A  D  Y  P  L  D  L  Q  H  P  Q  F  W  N  R  V  F  V  Y  R  F  Y  N  L  L  V  G  S  I  A  F  P  E  F  S  S  P  R  R  D  *  Y  T  G  R  K  Y  R  Y  L  V  F  L  F  *  R  L  F  R  I  E  C  *  W  K  *  L  I  S  S  S  S  T  C  L  R  L  K  L  L  S  V  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0103N02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5922" stop="5634"/>
                    <exon start="5289" stop="5156"/>
                    <exon start="4890" stop="4761"/>
                    <exon start="4644" stop="4487"/>
                    <exon start="3990" stop="3889"/>
                    <exon start="3728" stop="3624"/>
                    <exon start="3462" stop="3334"/>
                    <exon start="2743" stop="2603"/>
                    <exon start="1640" stop="1540"/>
                    <exon start="1263" stop="1206"/>
                    <exon start="717" stop="457"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1605</number_coding_nucleotides>
                  <number_encoded_amino_acids>535</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GINVNRRFLNPSFVLRISEMAKKKERSVNVSGKPKHSLDSNRDVSAAKNGRSAATVRRLKMYNTRPKRNPQGHIIKHDLQSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQTRLSSNYNVILKERKLPMSLLNDHQKQVKVHLLDNEPFADAFGPKTKRKRPKLMALDYEALVKKVDVSHDDFEDKHGASTSMDENADGFRDLVRHTMFEKGQSKRIWSELYKVIDSSDVVIQVLDARDPCGTRCYHLEKHLKENCKHKHMVLLLNKCDLVPAWATKGWLRVLSREYPTLAFHASVTKSFGKGSLLSVLRQFSRLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNHDSETDIVLKGVVRVTNLPDASEHISEVLNRVKKEHLKRAYKIENWVDEYDFLQQLCKSSGKLLKGGEPDYNTAAKMVLHDWQRGNIPFFVPPPKLDDEPNELVAEADTAVDNDQATAALKAIADVVSSQQLKEVPVQEELFSKAELLGEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6006" e_stop="5634"/>
            <exon e_start="5289" e_stop="5156"/>
            <exon e_start="4890" e_stop="4761"/>
            <exon e_start="4644" e_stop="4487"/>
            <exon e_start="3990" e_stop="3889"/>
            <exon e_start="3728" e_stop="3624"/>
            <exon e_start="3462" e_stop="3334"/>
            <exon e_start="2743" e_stop="2603"/>
            <exon e_start="1640" e_stop="1540"/>
            <exon e_start="1263" e_stop="1206"/>
            <exon e_start="717" e_stop="448"/>
            <exon e_start="397" e_stop="268"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="0.979"/>
          <exon-intron don_prob="0.993" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.952"/>
          <exon-only e_score="0.677"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="6006" e_stop="5634" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5289" e_stop="5156" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.976">
            <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4890" e_stop="4761" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.886" acc_prob="0.997">
            <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4644" e_stop="4487" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3990" e_stop="3889" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.927" acc_prob="0.990">
            <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3728" e_stop="3624" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.903" acc_prob="0.979">
            <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="3462" e_stop="3334" e_length="129"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="2743" e_stop="2603" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.944">
            <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="1640" e_stop="1540" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="1263" e_stop="1206" e_length="58"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488"/>
          </intron>
          <exon e_serial="11" e_score="0.952">
            <gDNA_exon_boundary e_start="717" e_stop="448" e_length="270"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="447" i_stop="398" i_length="50"/>
          </intron>
          <exon e_serial="12" e_score="0.677">
            <gDNA_exon_boundary e_start="397" e_stop="268" e_length="130"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6006" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5959" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5958" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5957" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5953" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5952" stop="5634"/>
              <exon start="5289" stop="5254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5952" stop="5650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5951" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5950" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5946" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5946" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5946" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5946" stop="5710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5945" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5945" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5945" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5945" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5945" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5945" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5945" stop="5634"/>
              <exon start="5289" stop="5197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5945" stop="5634"/>
              <exon start="5289" stop="5205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5944" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5944" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5944" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5944" stop="5634"/>
              <exon start="5289" stop="5165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5944" stop="5634"/>
              <exon start="5289" stop="5232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5943" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5943" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5942" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5942" stop="5634"/>
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              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5941" stop="5634"/>
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              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5941" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5941" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249811" strand="+"/>
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          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATATTGAAAAAGCTAGGTTTTAGCTCTTAACGCCTCCTCTTCTTTGTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG : GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG : CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG : ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG : GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG : TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG : GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT : GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG : GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG : GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG : GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGG : TATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGT</gDNA_template>
            <first_frame> H  I  L  K  K  L  G  F  S  S  *  R  L  L  F  F  V  E  C  I  L  Q  T  G  L  D  D  *  G  I  N  V  N  R  R  F  L  N  P  S  F  V  L  R  I  S  E  M  A  K  K  K  E  R  S  V  N  V  S  G  K  P  K  H  S  L  D  S  N  R  D  V  S  A  A  K  N  G  R  S  A  A  T  V  R  R  L  K  M  Y  N  T  R  P  K  R  N  P  Q  G  H  I  I  K  H  D  L  Q  S  K  E  L  P  S  T  R  I  Q  P  D  R  R  W  F   : G  N  T  R  V  V  N  Q  K  E  L  E  F  F  R  E  E  L  Q  T  R  L  S  S  N  Y  N  V  I  L  K  E  R  K  L  P  M  S  L  L  N  D  H  Q  K  :  Q  V  K  V  H  L  L  D  N  E  P  F  A  D  A  F  G  P  K  T  K  R  K  R  P  K  L  M  A  L  D  Y  E  A  L  V  K  K  V  D  V  S  H   : D  D  F  E  D  K  H  G  A  S  T  S  M  D  E  N  A  D  G  F  R  D  L  V  R  H  T  M  F  E  K  G  Q  S  K  R  I  W  S  E  L  Y  K  V  I  D  S  S  D  V  V  I  Q  :  V  L  D  A  R  D  P  C  G  T  R  C  Y  H  L  E  K  H  L  K  E  N  C  K  H  K  H  M  V  L  L  L  N  K  :  C  D  L  V  P  A  W  A  T  K  G  W  L  R  V  L  S  R  E  Y  P  T  L  A  F  H  A  S  V  T  K  S  F  G  K  :  G  S  L  L  S  V  L  R  Q  F  S  R  L  K  S  D  K  Q  A  I  S  V  G  F  I  G  Y  P  N  V  G  K  S  S  V  I  N  T  L  R  T  K  N  :  V  C  K  V  A  P  I  P  G  E  T  K  V  W  Q  Y  I  T  L  T  K  R  I  F  L  I  D  C  P  G  V  V  Y  Q  N  H  D  S  E  T  D  I  V  L  K  G  V  :  V  R  V  T  N  L  P  D  A  S  E  H  I  S  E  V  L  N  R  V  K  K  E  H  L  K  R  A  Y  K  I  E  N  W :   V  D  E  Y  D  F  L  Q  Q  L  C  K  S  S  G  K  L  L  K  :  G  G  E  P  D  Y  N  T  A  A  K  M  V  L  H  D  W  Q  R  G  N  I  P  F  F  V  P  P  P  K  L  D  D  E  P  N  E  L  V  A  E  A  D  T  A  V  D  N  D  Q  A  T  A  A  L  K  A  I  A  D  V  V  S  S  Q  Q  L  K  E  V  P  V  Q  E  E  L  F  S  K  A  E  L  L  G  E  N  *  Y  G  R  :  Y  R  F  Y  N  L  L  V  G  S  I  A  F  P  E  F  S  S  P  R  R  D  *  Y  T  G  R  K  Y  R  Y  L  V  F  L  F  *  R  L  F  R  I  E  </first_frame>
            <second_frame>  T  Y  *  K  S  *  V  L  A  L  N  A  S  S  S  L  W  S  V  Y  Y  K  P  A  *  T  T  E  V  L  T  L  I  A  D  S  *  T  L  V  L  F  F  V  Y  R  R  W  R  R  R  K  R  G  R  *  M  Y  R  E  S  Q  S  I  H  W  T  P  I  G  M  S  A  Q  P  K  M  A  V  A  P  L  L  C  G  G  S  R  C  T  I  P  G  R  S  V  I  L  R  V  T  *  L  S  T  T  Y  N  Q  R  S  C  H  Q  Q  G  Y  N  Q  I  V  V  G  S  :  V  I  L  G  W  S  T  R  R  N  W  S  F  L  E  K  S  S  K  L  G  F  P  V  T  T  M  L  Y  *  K  K  G  S  C  P  C  P  F  *  M  I  I  R  S :   K  *  K  F  I  C  L  T  M  S  H  L  L  M  L  L  D  Q  K  Q  R  G  N  A  P  N  L  W  H  *  I  M  K  L  *  *  R  R  L  M  C  L  M  :  M  I  L  K  T  N  M  V  L  A  P  P  W  M  K  M  L  M  D  S  E  I  L  L  G  T  Q  C  L  R  K  D  K  V  N  E  F  G  V  S  S  T  K  S  *  T  L  L  M  S  L  F  R :   F  L  M  P  E  T  P  V  V  Q  G  A  T  I  W  R  N  I  *  K  K  I  A  S  T  N  I  W  S  F  C  L  I  S :   V  I  W  S  L  L  G  Q  Q  R  D  G  L  E  C  S  L  G  N  I  Q  L  W  H  F  M  Q  V  S  P  S  P  L  E  R :   V  L  F  C  Q  C  *  D  S  F  L  V  *  R  A  I  S  K  Q  S  L  L  V  L  *  A  I  P  M  L  A  S  H  Q  L  L  I  H  C  A  Q  R  M :   F  A  R  W  L  L  S  Q  E  R  L  K  C  G  S  T  L  H  S  Q  R  G  Y  S  *  L  I  V  L  V  *  F  I  R  I  M  I  P  K  Q  I  *  S  *  R  A  W :   Y  E  *  Q  T  Y  L  M  L  L  N  T  L  A  K  C  *  I  A  L  R  R  S  I  L  K  E  L  I  R  *  R  I   : G  L  T  S  M  T  F  F  N  S  Y  A  S  L  Q  A  N  F  *  R :   E  V  N  L  T  T  I  L  L  P  R  W  F  S  M  I  G  K  E  A  T  F  L  S  L  F  H  L  Q  S  L  M  M  S  Q  M  N  L  S  Q  R  Q  T  Q  P  L  I  T  I  R  P  Q  L  L  S  K  L  L  L  T  S  F  H  H  N  N  *  R  K  F  L  F  R  R  N  Y  L  V  R  L  S  C  W  V  K  T  N  M  G  G :   I  V  F  T  I  F  *  L  G  P  L  H  S  Q  S  F  L  V  L  E  E  I  D  I  L  V  E  N  I  D  T  S  Y  F  C  F  N  V  Y  F  E  L  S </second_frame>
            <third_frame>   H  I  E  K  A  R  F  *  L  L  T  P  P  L  L  C  G  V  Y  T  T  N  R  P  R  R  L  R  Y  *  R  *  S  P  I  P  K  P  *  F  C  S  S  Y  I  G  D  G  E  E  E  R  E  V  G  E  C  I  G  K  A  K  A  F  I  G  L  Q  *  G  C  Q  R  S  Q  K  W  P  *  R  R  Y  C  A  A  A  Q  D  V  Q  Y  Q  A  E  A  *  S  S  G  S  H  N  *  A  R  L  T  I  K  G  A  A  I  N  K  D  T  T  R  S  S  L  V  R :   *  Y  S  G  G  Q  P  E  G  T  G  V  F  *  R  R  A  P  N  S  A  F  Q  *  L  Q  C  Y  I  K  R  K  E  V  A  H  V  P  F  K  *  S  S  E   : A  S  K  S  S  S  A  *  Q  *  A  I  C  *  C  F  W  T  K  N  K  E  E  T  P  Q  T  Y  G  I  R  L  *  S  F  S  E  E  G  *  C  V  S  * :   *  F  *  R  Q  T  W  C  *  H  L  H  G  *  K  C  *  W  I  Q  R  S  C  *  A  H  N  V  *  E  R  T  K  *  T  N  L  E  *  A  L  Q  S  H  R  L  F  *  C  R  Y  S   : G  S  *  C  Q  R  P  L  W  Y  K  V  L  P  F  G  E  T  F  E  R  K  L  Q  A  Q  T  Y  G  P  F  A  *  *   : V  *  F  G  P  C  L  G  N  K  G  M  A  *  S  A  L  *  G  I  S  N  F  G  I  S  C  K  C  H  Q  V  L  W  K   : G  F  S  F  V  S  A  E  T  V  F  S  S  K  E  R  *  A  S  N  L  C  W  F  Y  R  L  S  Q  C  W  Q  V  I  S  Y  *  Y  I  A  H  K  E   : C  L  Q  G  G  S  Y  P  R  R  D  *  S  V  A  V  H  Y  T  H  K  E  D  I  L  D  *  L  S  W  C  S  L  S  E  S  *  F  R  N  R  Y  S  L  E  G  R   : G  T  S  D  K  P  T  *  C  F  *  T  H  *  R  S  V  E  S  R  *  E  G  A  S  *  K  S  L  *  D  R  E  L  :  G  *  R  V  *  L  S  S  T  A  M  Q  V  F  R  Q  T  S  E   : G  R  *  T  *  L  Q  Y  C  C  Q  D  G  S  P  *  L  A  K  R  Q  H  S  F  L  C  S  T  S  K  A  *  *  *  A  K  *  T  C  R  R  G  R  H  S  R  *  *  R  S  G  H  S  C  S  Q  S  Y  C  *  R  R  F  I  T  T  T  E  G  S  S  C  S  G  G  T  I  *  *  G  *  A  V  G  *  K  L  I  W  A   : V  S  F  L  Q  S  F  S  W  V  H  C  I  P  R  V  F  *  S  *  K  R  L  I  Y  W  S  K  I  *  I  P  R  I  F  V  L  T  F  I  S  N  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0103N02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5922" stop="5634"/>
                    <exon start="5289" stop="5156"/>
                    <exon start="4890" stop="4761"/>
                    <exon start="4644" stop="4487"/>
                    <exon start="3990" stop="3889"/>
                    <exon start="3728" stop="3624"/>
                    <exon start="3462" stop="3334"/>
                    <exon start="2743" stop="2603"/>
                    <exon start="1640" stop="1540"/>
                    <exon start="1263" stop="1206"/>
                    <exon start="717" stop="457"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1605</number_coding_nucleotides>
                  <number_encoded_amino_acids>535</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GINVNRRFLNPSFVLRISEMAKKKERSVNVSGKPKHSLDSNRDVSAAKNGRSAATVRRLKMYNTRPKRNPQGHIIKHDLQSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQTRLSSNYNVILKERKLPMSLLNDHQKQVKVHLLDNEPFADAFGPKTKRKRPKLMALDYEALVKKVDVSHDDFEDKHGASTSMDENADGFRDLVRHTMFEKGQSKRIWSELYKVIDSSDVVIQVLDARDPCGTRCYHLEKHLKENCKHKHMVLLLNKCDLVPAWATKGWLRVLSREYPTLAFHASVTKSFGKGSLLSVLRQFSRLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNHDSETDIVLKGVVRVTNLPDASEHISEVLNRVKKEHLKRAYKIENWVDEYDFLQQLCKSSGKLLKGGEPDYNTAAKMVLHDWQRGNIPFFVPPPKLDDEPNELVAEADTAVDNDQATAALKAIADVVSSQQLKEVPVQEELFSKAELLGEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="6006" e_stop="5634"/>
            <exon e_start="5289" e_stop="5156"/>
            <exon e_start="4890" e_stop="4761"/>
            <exon e_start="4644" e_stop="4487"/>
            <exon e_start="3990" e_stop="3889"/>
            <exon e_start="3728" e_stop="3624"/>
            <exon e_start="3462" e_stop="3334"/>
            <exon e_start="2743" e_stop="2603"/>
            <exon e_start="1640" e_stop="1319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="0.979"/>
          <exon-intron don_prob="0.993" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.944" e_score="0.979"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="6006" e_stop="5634" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5289" e_stop="5156" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.976">
            <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4890" e_stop="4761" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.886" acc_prob="0.997">
            <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4644" e_stop="4487" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3990" e_stop="3889" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.927" acc_prob="0.990">
            <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3728" e_stop="3624" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.903" acc_prob="0.979">
            <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="3462" e_stop="3334" e_length="129"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590"/>
          </intron>
          <exon e_serial="8" e_score="0.979">
            <gDNA_exon_boundary e_start="2743" e_stop="2603" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.944">
            <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962"/>
          </intron>
          <exon e_serial="9" e_score="0.963">
            <gDNA_exon_boundary e_start="1640" e_stop="1319" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6006" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5959" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5958" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5957" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5953" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5952" stop="5634"/>
              <exon start="5289" stop="5254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5952" stop="5650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5951" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5950" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467900" strand="+"/>
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          <PGS_line>
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            <gDNA_exon_coordinates>
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              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4881" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4775" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4631" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4590" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4579" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3651" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3420" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATATTGAAAAAGCTAGGTTTTAGCTCTTAACGCCTCCTCTTCTTTGTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG : GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG : CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG : ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG : GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG : TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG : GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT : GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG : GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGTAAATTTTCTCATCATTTGATTTTATTTGTAGATTTCATCAAGTACTCAGCAAGACATTCTTCTAGTTTGTTTAGCCTGCTTCCTCGTAGATAGAAATGGGAACACATTGTAGTTGTATCTGCTTCGTCATTTGTTCTATTATATATGTACATTTGGTAAATTATCTCACCAAGTAGAATGAGAATCATGTATTCTTTCGGCAGTTTGTGTTGACACCCC</gDNA_template>
            <first_frame> H  I  L  K  K  L  G  F  S  S  *  R  L  L  F  F  V  E  C  I  L  Q  T  G  L  D  D  *  G  I  N  V  N  R  R  F  L  N  P  S  F  V  L  R  I  S  E  M  A  K  K  K  E  R  S  V  N  V  S  G  K  P  K  H  S  L  D  S  N  R  D  V  S  A  A  K  N  G  R  S  A  A  T  V  R  R  L  K  M  Y  N  T  R  P  K  R  N  P  Q  G  H  I  I  K  H  D  L  Q  S  K  E  L  P  S  T  R  I  Q  P  D  R  R  W  F   : G  N  T  R  V  V  N  Q  K  E  L  E  F  F  R  E  E  L  Q  T  R  L  S  S  N  Y  N  V  I  L  K  E  R  K  L  P  M  S  L  L  N  D  H  Q  K  :  Q  V  K  V  H  L  L  D  N  E  P  F  A  D  A  F  G  P  K  T  K  R  K  R  P  K  L  M  A  L  D  Y  E  A  L  V  K  K  V  D  V  S  H   : D  D  F  E  D  K  H  G  A  S  T  S  M  D  E  N  A  D  G  F  R  D  L  V  R  H  T  M  F  E  K  G  Q  S  K  R  I  W  S  E  L  Y  K  V  I  D  S  S  D  V  V  I  Q  :  V  L  D  A  R  D  P  C  G  T  R  C  Y  H  L  E  K  H  L  K  E  N  C  K  H  K  H  M  V  L  L  L  N  K  :  C  D  L  V  P  A  W  A  T  K  G  W  L  R  V  L  S  R  E  Y  P  T  L  A  F  H  A  S  V  T  K  S  F  G  K  :  G  S  L  L  S  V  L  R  Q  F  S  R  L  K  S  D  K  Q  A  I  S  V  G  F  I  G  Y  P  N  V  G  K  S  S  V  I  N  T  L  R  T  K  N  :  V  C  K  V  A  P  I  P  G  E  T  K  V  W  Q  Y  I  T  L  T  K  R  I  F  L  I  D  C  P  G  V  V  Y  Q  N  H  D  S  E  T  D  I  V  L  K  G  V  :  V  R  V  T  N  L  P  D  A  S  E  H  I  S  E  V  L  N  R  V  K  K  E  H  L  K  R  A  Y  K  I  E  N  W  *  I  F  S  S  F  D  F  I  C  R  F  H  Q  V  L  S  K  T  F  F  *  F  V  *  P  A  S  S  *  I  E  M  G  T  H  C  S  C  I  C  F  V  I  C  S  I  I  Y  V  H  L  V  N  Y  L  T  K  *  N  E  N  H  V  F  F  R  Q  F  V  L  T  P  </first_frame>
            <second_frame>  T  Y  *  K  S  *  V  L  A  L  N  A  S  S  S  L  W  S  V  Y  Y  K  P  A  *  T  T  E  V  L  T  L  I  A  D  S  *  T  L  V  L  F  F  V  Y  R  R  W  R  R  R  K  R  G  R  *  M  Y  R  E  S  Q  S  I  H  W  T  P  I  G  M  S  A  Q  P  K  M  A  V  A  P  L  L  C  G  G  S  R  C  T  I  P  G  R  S  V  I  L  R  V  T  *  L  S  T  T  Y  N  Q  R  S  C  H  Q  Q  G  Y  N  Q  I  V  V  G  S  :  V  I  L  G  W  S  T  R  R  N  W  S  F  L  E  K  S  S  K  L  G  F  P  V  T  T  M  L  Y  *  K  K  G  S  C  P  C  P  F  *  M  I  I  R  S :   K  *  K  F  I  C  L  T  M  S  H  L  L  M  L  L  D  Q  K  Q  R  G  N  A  P  N  L  W  H  *  I  M  K  L  *  *  R  R  L  M  C  L  M  :  M  I  L  K  T  N  M  V  L  A  P  P  W  M  K  M  L  M  D  S  E  I  L  L  G  T  Q  C  L  R  K  D  K  V  N  E  F  G  V  S  S  T  K  S  *  T  L  L  M  S  L  F  R :   F  L  M  P  E  T  P  V  V  Q  G  A  T  I  W  R  N  I  *  K  K  I  A  S  T  N  I  W  S  F  C  L  I  S :   V  I  W  S  L  L  G  Q  Q  R  D  G  L  E  C  S  L  G  N  I  Q  L  W  H  F  M  Q  V  S  P  S  P  L  E  R :   V  L  F  C  Q  C  *  D  S  F  L  V  *  R  A  I  S  K  Q  S  L  L  V  L  *  A  I  P  M  L  A  S  H  Q  L  L  I  H  C  A  Q  R  M :   F  A  R  W  L  L  S  Q  E  R  L  K  C  G  S  T  L  H  S  Q  R  G  Y  S  *  L  I  V  L  V  *  F  I  R  I  M  I  P  K  Q  I  *  S  *  R  A  W :   Y  E  *  Q  T  Y  L  M  L  L  N  T  L  A  K  C  *  I  A  L  R  R  S  I  L  K  E  L  I  R  *  R  I  G  K  F  S  H  H  L  I  L  F  V  D  F  I  K  Y  S  A  R  H  S  S  S  L  F  S  L  L  P  R  R  *  K  W  E  H  I  V  V  V  S  A  S  S  F  V  L  L  Y  M  Y  I  W  *  I  I  S  P  S  R  M  R  I  M  Y  S  F  G  S  L  C  *  H  P </second_frame>
            <third_frame>   H  I  E  K  A  R  F  *  L  L  T  P  P  L  L  C  G  V  Y  T  T  N  R  P  R  R  L  R  Y  *  R  *  S  P  I  P  K  P  *  F  C  S  S  Y  I  G  D  G  E  E  E  R  E  V  G  E  C  I  G  K  A  K  A  F  I  G  L  Q  *  G  C  Q  R  S  Q  K  W  P  *  R  R  Y  C  A  A  A  Q  D  V  Q  Y  Q  A  E  A  *  S  S  G  S  H  N  *  A  R  L  T  I  K  G  A  A  I  N  K  D  T  T  R  S  S  L  V  R :   *  Y  S  G  G  Q  P  E  G  T  G  V  F  *  R  R  A  P  N  S  A  F  Q  *  L  Q  C  Y  I  K  R  K  E  V  A  H  V  P  F  K  *  S  S  E   : A  S  K  S  S  S  A  *  Q  *  A  I  C  *  C  F  W  T  K  N  K  E  E  T  P  Q  T  Y  G  I  R  L  *  S  F  S  E  E  G  *  C  V  S  * :   *  F  *  R  Q  T  W  C  *  H  L  H  G  *  K  C  *  W  I  Q  R  S  C  *  A  H  N  V  *  E  R  T  K  *  T  N  L  E  *  A  L  Q  S  H  R  L  F  *  C  R  Y  S   : G  S  *  C  Q  R  P  L  W  Y  K  V  L  P  F  G  E  T  F  E  R  K  L  Q  A  Q  T  Y  G  P  F  A  *  *   : V  *  F  G  P  C  L  G  N  K  G  M  A  *  S  A  L  *  G  I  S  N  F  G  I  S  C  K  C  H  Q  V  L  W  K   : G  F  S  F  V  S  A  E  T  V  F  S  S  K  E  R  *  A  S  N  L  C  W  F  Y  R  L  S  Q  C  W  Q  V  I  S  Y  *  Y  I  A  H  K  E   : C  L  Q  G  G  S  Y  P  R  R  D  *  S  V  A  V  H  Y  T  H  K  E  D  I  L  D  *  L  S  W  C  S  L  S  E  S  *  F  R  N  R  Y  S  L  E  G  R   : G  T  S  D  K  P  T  *  C  F  *  T  H  *  R  S  V  E  S  R  *  E  G  A  S  *  K  S  L  *  D  R  E  L  V  N  F  L  I  I  *  F  Y  L  *  I  S  S  S  T  Q  Q  D  I  L  L  V  C  L  A  C  F  L  V  D  R  N  G  N  T  L  *  L  Y  L  L  R  H  L  F  Y  Y  I  C  T  F  G  K  L  S  H  Q  V  E  *  E  S  C  I  L  S  A  V  C  V  D  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0103N02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5922" stop="5634"/>
                    <exon start="5289" stop="5156"/>
                    <exon start="4890" stop="4761"/>
                    <exon start="4644" stop="4487"/>
                    <exon start="3990" stop="3889"/>
                    <exon start="3728" stop="3624"/>
                    <exon start="3462" stop="3334"/>
                    <exon start="2743" stop="2603"/>
                    <exon start="1640" stop="1536"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1290</number_coding_nucleotides>
                  <number_encoded_amino_acids>430</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GINVNRRFLNPSFVLRISEMAKKKERSVNVSGKPKHSLDSNRDVSAAKNGRSAATVRRLKMYNTRPKRNPQGHIIKHDLQSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQTRLSSNYNVILKERKLPMSLLNDHQKQVKVHLLDNEPFADAFGPKTKRKRPKLMALDYEALVKKVDVSHDDFEDKHGASTSMDENADGFRDLVRHTMFEKGQSKRIWSELYKVIDSSDVVIQVLDARDPCGTRCYHLEKHLKENCKHKHMVLLLNKCDLVPAWATKGWLRVLSREYPTLAFHASVTKSFGKGSLLSVLRQFSRLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNHDSETDIVLKGVVRVTNLPDASEHISEVLNRVKKEHLKRAYKIENW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="6006" e_stop="5634"/>
            <exon e_start="5289" e_stop="5156"/>
            <exon e_start="4890" e_stop="4761"/>
            <exon e_start="4644" e_stop="4487"/>
            <exon e_start="3990" e_stop="3889"/>
            <exon e_start="3728" e_stop="3624"/>
            <exon e_start="3492" e_stop="3334"/>
            <exon e_start="2743" e_stop="2603"/>
            <exon e_start="1640" e_stop="1540"/>
            <exon e_start="1263" e_stop="1206"/>
            <exon e_start="717" e_stop="198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="0.979"/>
          <exon-intron don_prob="0.993" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.000" e_score="0.981"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="0.969"/>
          <exon-intron don_prob="0.978" acc_prob="0.944" e_score="0.986"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="6006" e_stop="5634" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5633" i_stop="5290" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5289" e_stop="5156" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.976">
            <gDNA_intron_boundary i_start="5155" i_stop="4891" i_length="265"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4890" e_stop="4761" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.886" acc_prob="0.997">
            <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4644" e_stop="4487" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3990" e_stop="3889" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.927" acc_prob="0.990">
            <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160"/>
          </intron>
          <exon e_serial="6" e_score="0.981">
            <gDNA_exon_boundary e_start="3728" e_stop="3624" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.903" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3623" i_stop="3493" i_length="131"/>
          </intron>
          <exon e_serial="7" e_score="0.969">
            <gDNA_exon_boundary e_start="3492" e_stop="3334" e_length="159"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590"/>
          </intron>
          <exon e_serial="8" e_score="0.986">
            <gDNA_exon_boundary e_start="2743" e_stop="2603" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.944">
            <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="1640" e_stop="1540" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="1263" e_stop="1206" e_length="58"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488"/>
          </intron>
          <exon e_serial="11" e_score="0.998">
            <gDNA_exon_boundary e_start="717" e_stop="198" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6006" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5959" stop="5634"/>
              <exon start="5289" stop="5156"/>
              <exon start="4890" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721282" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="3728" stop="3624"/>
              <exon start="3492" stop="3340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4881" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3461" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3420" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3403" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2684" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2681" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262241" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263600" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1610" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692933" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="668" stop="198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="649" stop="217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="631" stop="232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258121" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATATTGAAAAAGCTAGGTTTTAGCTCTTAACGCCTCCTCTTCTTTGTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATCGGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAAAAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGACTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCG : GTAATACTCGGGTGGTCAACCAGAAGGAACTGGAGTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGATCATCAGAAG : CAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG : ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG : GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG : TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG : GTTACTTATTTTGTTTTCTTGGGCATTCAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT : GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG : GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG : GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG : GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGATTGAAGCTTCTTTCTGTTCTATACGA</gDNA_template>
            <first_frame> H  I  L  K  K  L  G  F  S  S  *  R  L  L  F  F  V  E  C  I  L  Q  T  G  L  D  D  *  G  I  N  V  N  R  R  F  L  N  P  S  F  V  L  R  I  S  E  M  A  K  K  K  E  R  S  V  N  V  S  G  K  P  K  H  S  L  D  S  N  R  D  V  S  A  A  K  N  G  R  S  A  A  T  V  R  R  L  K  M  Y  N  T  R  P  K  R  N  P  Q  G  H  I  I  K  H  D  L  Q  S  K  E  L  P  S  T  R  I  Q  P  D  R  R  W  F   : G  N  T  R  V  V  N  Q  K  E  L  E  F  F  R  E  E  L  Q  T  R  L  S  S  N  Y  N  V  I  L  K  E  R  K  L  P  M  S  L  L  N  D  H  Q  K  :  Q  V  K  V  H  L  L  D  N  E  P  F  A  D  A  F  G  P  K  T  K  R  K  R  P  K  L  M  A  L  D  Y  E  A  L  V  K  K  V  D  V  S  H   : D  D  F  E  D  K  H  G  A  S  T  S  M  D  E  N  A  D  G  F  R  D  L  V  R  H  T  M  F  E  K  G  Q  S  K  R  I  W  S  E  L  Y  K  V  I  D  S  S  D  V  V  I  Q  :  V  L  D  A  R  D  P  C  G  T  R  C  Y  H  L  E  K  H  L  K  E  N  C  K  H  K  H  M  V  L  L  L  N  K  :  C  D  L  V  P  A  W  A  T  K  G  W  L  R  V  L  S  R  E  Y  P  T  L  A  F  H  A  S  V  T  K  S  F  G  K  :  V  T  Y  F  V  F  L  G  I  Q  G  S  L  L  S  V  L  R  Q  F  S  R  L  K  S  D  K  Q  A  I  S  V  G  F  I  G  Y  P  N  V  G  K  S  S  V  I  N  T  L  R  T  K  N  :  V  C  K  V  A  P  I  P  G  E  T  K  V  W  Q  Y  I  T  L  T  K  R  I  F  L  I  D  C  P  G  V  V  Y  Q  N  H  D  S  E  T  D  I  V  L  K  G  V  :  V  R  V  T  N  L  P  D  A  S  E  H  I  S  E  V  L  N  R  V  K  K  E  H  L  K  R  A  Y  K  I  E  N  W :   V  D  E  Y  D  F  L  Q  Q  L  C  K  S  S  G  K  L  L  K  :  G  G  E  P  D  Y  N  T  A  A  K  M  V  L  H  D  W  Q  R  G  N  I  P  F  F  V  P  P  P  K  L  D  D  E  P  N  E  L  V  A  E  A  D  T  A  V  D  N  D  Q  A  T  A  A  L  K  A  I  A  D  V  V  S  S  Q  Q  L  K  E  V  P  V  Q  E  E  L  F  S  K  A  E  L  L  G  E  N  *  Y  G  R  I  I  L  *  T  C  N  I  H  S  S  G  I  E  F  S  Y  I  V  F  T  I  F  *  L  G  P  L  H  S  Q  S  F  L  V  L  E  E  I  D  I  L  V  E  N  I  D  T  S  Y  F  C  F  N  V  Y  F  E  L  S  V  N  G  N  D  *  Y  H  L  A  Q  L  V  *  D  *  S  F  F  L  F  Y  T  </first_frame>
            <second_frame>  T  Y  *  K  S  *  V  L  A  L  N  A  S  S  S  L  W  S  V  Y  Y  K  P  A  *  T  T  E  V  L  T  L  I  A  D  S  *  T  L  V  L  F  F  V  Y  R  R  W  R  R  R  K  R  G  R  *  M  Y  R  E  S  Q  S  I  H  W  T  P  I  G  M  S  A  Q  P  K  M  A  V  A  P  L  L  C  G  G  S  R  C  T  I  P  G  R  S  V  I  L  R  V  T  *  L  S  T  T  Y  N  Q  R  S  C  H  Q  Q  G  Y  N  Q  I  V  V  G  S  :  V  I  L  G  W  S  T  R  R  N  W  S  F  L  E  K  S  S  K  L  G  F  P  V  T  T  M  L  Y  *  K  K  G  S  C  P  C  P  F  *  M  I  I  R  S :   K  *  K  F  I  C  L  T  M  S  H  L  L  M  L  L  D  Q  K  Q  R  G  N  A  P  N  L  W  H  *  I  M  K  L  *  *  R  R  L  M  C  L  M  :  M  I  L  K  T  N  M  V  L  A  P  P  W  M  K  M  L  M  D  S  E  I  L  L  G  T  Q  C  L  R  K  D  K  V  N  E  F  G  V  S  S  T  K  S  *  T  L  L  M  S  L  F  R :   F  L  M  P  E  T  P  V  V  Q  G  A  T  I  W  R  N  I  *  K  K  I  A  S  T  N  I  W  S  F  C  L  I  S :   V  I  W  S  L  L  G  Q  Q  R  D  G  L  E  C  S  L  G  N  I  Q  L  W  H  F  M  Q  V  S  P  S  P  L  E  R :   L  L  I  L  F  S  W  A  F  R  V  L  F  C  Q  C  *  D  S  F  L  V  *  R  A  I  S  K  Q  S  L  L  V  L  *  A  I  P  M  L  A  S  H  Q  L  L  I  H  C  A  Q  R  M :   F  A  R  W  L  L  S  Q  E  R  L  K  C  G  S  T  L  H  S  Q  R  G  Y  S  *  L  I  V  L  V  *  F  I  R  I  M  I  P  K  Q  I  *  S  *  R  A  W :   Y  E  *  Q  T  Y  L  M  L  L  N  T  L  A  K  C  *  I  A  L  R  R  S  I  L  K  E  L  I  R  *  R  I   : G  L  T  S  M  T  F  F  N  S  Y  A  S  L  Q  A  N  F  *  R :   E  V  N  L  T  T  I  L  L  P  R  W  F  S  M  I  G  K  E  A  T  F  L  S  L  F  H  L  Q  S  L  M  M  S  Q  M  N  L  S  Q  R  Q  T  Q  P  L  I  T  I  R  P  Q  L  L  S  K  L  L  L  T  S  F  H  H  N  N  *  R  K  F  L  F  R  R  N  Y  L  V  R  L  S  C  W  V  K  T  N  M  G  G  L  S  F  R  L  A  T  S  T  V  L  E  S  S  F  R  I  S  F  L  Q  S  F  S  W  V  H  C  I  P  R  V  F  *  S  *  K  R  L  I  Y  W  S  K  I  *  I  P  R  I  F  V  L  T  F  I  S  N  *  V  L  M  E  M  I  N  I  I  *  L  N  L  F  K  I  E  A  S  F  C  S  I  R </second_frame>
            <third_frame>   H  I  E  K  A  R  F  *  L  L  T  P  P  L  L  C  G  V  Y  T  T  N  R  P  R  R  L  R  Y  *  R  *  S  P  I  P  K  P  *  F  C  S  S  Y  I  G  D  G  E  E  E  R  E  V  G  E  C  I  G  K  A  K  A  F  I  G  L  Q  *  G  C  Q  R  S  Q  K  W  P  *  R  R  Y  C  A  A  A  Q  D  V  Q  Y  Q  A  E  A  *  S  S  G  S  H  N  *  A  R  L  T  I  K  G  A  A  I  N  K  D  T  T  R  S  S  L  V  R :   *  Y  S  G  G  Q  P  E  G  T  G  V  F  *  R  R  A  P  N  S  A  F  Q  *  L  Q  C  Y  I  K  R  K  E  V  A  H  V  P  F  K  *  S  S  E   : A  S  K  S  S  S  A  *  Q  *  A  I  C  *  C  F  W  T  K  N  K  E  E  T  P  Q  T  Y  G  I  R  L  *  S  F  S  E  E  G  *  C  V  S  * :   *  F  *  R  Q  T  W  C  *  H  L  H  G  *  K  C  *  W  I  Q  R  S  C  *  A  H  N  V  *  E  R  T  K  *  T  N  L  E  *  A  L  Q  S  H  R  L  F  *  C  R  Y  S   : G  S  *  C  Q  R  P  L  W  Y  K  V  L  P  F  G  E  T  F  E  R  K  L  Q  A  Q  T  Y  G  P  F  A  *  *   : V  *  F  G  P  C  L  G  N  K  G  M  A  *  S  A  L  *  G  I  S  N  F  G  I  S  C  K  C  H  Q  V  L  W  K   : G  Y  L  F  C  F  L  G  H  S  G  F  S  F  V  S  A  E  T  V  F  S  S  K  E  R  *  A  S  N  L  C  W  F  Y  R  L  S  Q  C  W  Q  V  I  S  Y  *  Y  I  A  H  K  E   : C  L  Q  G  G  S  Y  P  R  R  D  *  S  V  A  V  H  Y  T  H  K  E  D  I  L  D  *  L  S  W  C  S  L  S  E  S  *  F  R  N  R  Y  S  L  E  G  R   : G  T  S  D  K  P  T  *  C  F  *  T  H  *  R  S  V  E  S  R  *  E  G  A  S  *  K  S  L  *  D  R  E  L  :  G  *  R  V  *  L  S  S  T  A  M  Q  V  F  R  Q  T  S  E   : G  R  *  T  *  L  Q  Y  C  C  Q  D  G  S  P  *  L  A  K  R  Q  H  S  F  L  C  S  T  S  K  A  *  *  *  A  K  *  T  C  R  R  G  R  H  S  R  *  *  R  S  G  H  S  C  S  Q  S  Y  C  *  R  R  F  I  T  T  T  E  G  S  S  C  S  G  G  T  I  *  *  G  *  A  V  G  *  K  L  I  W  A  D  Y  P  L  D  L  Q  H  P  Q  F  W  N  R  V  F  V  Y  R  F  Y  N  L  L  V  G  S  I  A  F  P  E  F  S  S  P  R  R  D  *  Y  T  G  R  K  Y  R  Y  L  V  F  L  F  *  R  L  F  R  I  E  C  *  W  K  *  L  I  S  S  S  S  T  C  L  R  L  K  L  L  S  V  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0103N02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5922" stop="5634"/>
                    <exon start="5289" stop="5156"/>
                    <exon start="4890" stop="4761"/>
                    <exon start="4644" stop="4487"/>
                    <exon start="3990" stop="3889"/>
                    <exon start="3728" stop="3624"/>
                    <exon start="3492" stop="3334"/>
                    <exon start="2743" stop="2603"/>
                    <exon start="1640" stop="1540"/>
                    <exon start="1263" stop="1206"/>
                    <exon start="717" stop="457"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1635</number_coding_nucleotides>
                  <number_encoded_amino_acids>545</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GINVNRRFLNPSFVLRISEMAKKKERSVNVSGKPKHSLDSNRDVSAAKNGRSAATVRRLKMYNTRPKRNPQGHIIKHDLQSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQTRLSSNYNVILKERKLPMSLLNDHQKQVKVHLLDNEPFADAFGPKTKRKRPKLMALDYEALVKKVDVSHDDFEDKHGASTSMDENADGFRDLVRHTMFEKGQSKRIWSELYKVIDSSDVVIQVLDARDPCGTRCYHLEKHLKENCKHKHMVLLLNKCDLVPAWATKGWLRVLSREYPTLAFHASVTKSFGKVTYFVFLGIQGSLLSVLRQFSRLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNHDSETDIVLKGVVRVTNLPDASEHISEVLNRVKKEHLKRAYKIENWVDEYDFLQQLCKSSGKLLKGGEPDYNTAAKMVLHDWQRGNIPFFVPPPKLDDEPNELVAEADTAVDNDQATAALKAIADVVSSQQLKEVPVQEELFSKAELLGEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="4893" e_stop="4761"/>
            <exon e_start="4644" e_stop="4487"/>
            <exon e_start="3990" e_stop="3889"/>
            <exon e_start="3728" e_stop="3624"/>
            <exon e_start="3462" e_stop="3334"/>
            <exon e_start="2743" e_stop="2603"/>
            <exon e_start="1640" e_stop="1540"/>
            <exon e_start="1263" e_stop="1206"/>
            <exon e_start="717" e_stop="198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.886" acc_prob="0.997" e_score="0.975"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="4893" e_stop="4761" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.886" acc_prob="0.997">
            <gDNA_intron_boundary i_start="4760" i_stop="4645" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4644" e_stop="4487" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4486" i_stop="3991" i_length="496"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3990" e_stop="3889" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.927" acc_prob="0.990">
            <gDNA_intron_boundary i_start="3888" i_stop="3729" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3728" e_stop="3624" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.903" acc_prob="0.979">
            <gDNA_intron_boundary i_start="3623" i_stop="3463" i_length="161"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3462" e_stop="3334" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="3333" i_stop="2744" i_length="590"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2743" e_stop="2603" e_length="141"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.944">
            <gDNA_intron_boundary i_start="2602" i_stop="1641" i_length="962"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="1640" e_stop="1540" e_length="101"/>
          </exon>
          <intron i_serial="7" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1539" i_stop="1264" i_length="276"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="1263" e_stop="1206" e_length="58"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="1205" i_stop="718" i_length="488"/>
          </intron>
          <exon e_serial="9" e_score="0.998">
            <gDNA_exon_boundary e_start="717" e_stop="198" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4893" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4893" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4885" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4881" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4881" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4775" stop="4761"/>
              <exon start="4644" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4642" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4631" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4590" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4579" stop="4487"/>
              <exon start="3990" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3987" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3950" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3903" stop="3889"/>
              <exon start="3728" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3675" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3668" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3667" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3638" stop="3624"/>
              <exon start="3462" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3461" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3420" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3403" stop="3334"/>
              <exon start="2743" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2684" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2681" stop="2603"/>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262241" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1640" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263600" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1610" stop="1540"/>
              <exon start="1263" stop="1206"/>
              <exon start="717" stop="232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692933" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="668" stop="198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="649" stop="217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="631" stop="232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258121" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACTTATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATG : ATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGATGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGTCATAGACTCTTCTGATGTCGTTATTCAG : GTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGAAAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAG : TGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTCTAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAG : GGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCGTCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAAGAAT : GTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCCTGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTG : GTACGAGTGACAAACCTACCTGATGCTTCTGAACACATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTG : GGTTGACGAGTATGACTTTCTTCAACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAG : GGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAGAGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGATCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAAGGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGTTTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTCGTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAAGATTGAAGCTTCTTTCTGTTCTATACGA</gDNA_template>
            <first_frame> K  Q  V  K  V  H  L  L  D  N  E  P  F  A  D  A  F  G  P  K  T  K  R  K  R  P  K  L  M  A  L  D  Y  E  A  L  V  K  K  V  D  V  S  H   : D  D  F  E  D  K  H  G  A  S  T  S  M  D  E  N  A  D  G  F  R  D  L  V  R  H  T  M  F  E  K  G  Q  S  K  R  I  W  S  E  L  Y  K  V  I  D  S  S  D  V  V  I  Q  :  V  L  D  A  R  D  P  C  G  T  R  C  Y  H  L  E  K  H  L  K  E  N  C  K  H  K  H  M  V  L  L  L  N  K  :  C  D  L  V  P  A  W  A  T  K  G  W  L  R  V  L  S  R  E  Y  P  T  L  A  F  H  A  S  V  T  K  S  F  G  K  :  G  S  L  L  S  V  L  R  Q  F  S  R  L  K  S  D  K  Q  A  I  S  V  G  F  I  G  Y  P  N  V  G  K  S  S  V  I  N  T  L  R  T  K  N  :  V  C  K  V  A  P  I  P  G  E  T  K  V  W  Q  Y  I  T  L  T  K  R  I  F  L  I  D  C  P  G  V  V  Y  Q  N  H  D  S  E  T  D  I  V  L  K  G  V  :  V  R  V  T  N  L  P  D  A  S  E  H  I  S  E  V  L  N  R  V  K  K  E  H  L  K  R  A  Y  K  I  E  N  W :   V  D  E  Y  D  F  L  Q  Q  L  C  K  S  S  G  K  L  L  K  :  G  G  E  P  D  Y  N  T  A  A  K  M  V  L  H  D  W  Q  R  G  N  I  P  F  F  V  P  P  P  K  L  D  D  E  P  N  E  L  V  A  E  A  D  T  A  V  D  N  D  Q  A  T  A  A  L  K  A  I  A  D  V  V  S  S  Q  Q  L  K  E  V  P  V  Q  E  E  L  F  S  K  A  E  L  L  G  E  N  *  Y  G  R  I  I  L  *  T  C  N  I  H  S  S  G  I  E  F  S  Y  I  V  F  T  I  F  *  L  G  P  L  H  S  Q  S  F  L  V  L  E  E  I  D  I  L  V  E  N  I  D  T  S  Y  F  C  F  N  V  Y  F  E  L  S  V  N  G  N  D  *  Y  H  L  A  Q  L  V  *  D  *  S  F  F  L  F  Y  T  </first_frame>
            <second_frame>  S  K  *  K  F  I  C  L  T  M  S  H  L  L  M  L  L  D  Q  K  Q  R  G  N  A  P  N  L  W  H  *  I  M  K  L  *  *  R  R  L  M  C  L  M  :  M  I  L  K  T  N  M  V  L  A  P  P  W  M  K  M  L  M  D  S  E  I  L  L  G  T  Q  C  L  R  K  D  K  V  N  E  F  G  V  S  S  T  K  S  *  T  L  L  M  S  L  F  R :   F  L  M  P  E  T  P  V  V  Q  G  A  T  I  W  R  N  I  *  K  K  I  A  S  T  N  I  W  S  F  C  L  I  S :   V  I  W  S  L  L  G  Q  Q  R  D  G  L  E  C  S  L  G  N  I  Q  L  W  H  F  M  Q  V  S  P  S  P  L  E  R :   V  L  F  C  Q  C  *  D  S  F  L  V  *  R  A  I  S  K  Q  S  L  L  V  L  *  A  I  P  M  L  A  S  H  Q  L  L  I  H  C  A  Q  R  M :   F  A  R  W  L  L  S  Q  E  R  L  K  C  G  S  T  L  H  S  Q  R  G  Y  S  *  L  I  V  L  V  *  F  I  R  I  M  I  P  K  Q  I  *  S  *  R  A  W :   Y  E  *  Q  T  Y  L  M  L  L  N  T  L  A  K  C  *  I  A  L  R  R  S  I  L  K  E  L  I  R  *  R  I   : G  L  T  S  M  T  F  F  N  S  Y  A  S  L  Q  A  N  F  *  R :   E  V  N  L  T  T  I  L  L  P  R  W  F  S  M  I  G  K  E  A  T  F  L  S  L  F  H  L  Q  S  L  M  M  S  Q  M  N  L  S  Q  R  Q  T  Q  P  L  I  T  I  R  P  Q  L  L  S  K  L  L  L  T  S  F  H  H  N  N  *  R  K  F  L  F  R  R  N  Y  L  V  R  L  S  C  W  V  K  T  N  M  G  G  L  S  F  R  L  A  T  S  T  V  L  E  S  S  F  R  I  S  F  L  Q  S  F  S  W  V  H  C  I  P  R  V  F  *  S  *  K  R  L  I  Y  W  S  K  I  *  I  P  R  I  F  V  L  T  F  I  S  N  *  V  L  M  E  M  I  N  I  I  *  L  N  L  F  K  I  E  A  S  F  C  S  I  R </second_frame>
            <third_frame>   A  S  K  S  S  S  A  *  Q  *  A  I  C  *  C  F  W  T  K  N  K  E  E  T  P  Q  T  Y  G  I  R  L  *  S  F  S  E  E  G  *  C  V  S  * :   *  F  *  R  Q  T  W  C  *  H  L  H  G  *  K  C  *  W  I  Q  R  S  C  *  A  H  N  V  *  E  R  T  K  *  T  N  L  E  *  A  L  Q  S  H  R  L  F  *  C  R  Y  S   : G  S  *  C  Q  R  P  L  W  Y  K  V  L  P  F  G  E  T  F  E  R  K  L  Q  A  Q  T  Y  G  P  F  A  *  *   : V  *  F  G  P  C  L  G  N  K  G  M  A  *  S  A  L  *  G  I  S  N  F  G  I  S  C  K  C  H  Q  V  L  W  K   : G  F  S  F  V  S  A  E  T  V  F  S  S  K  E  R  *  A  S  N  L  C  W  F  Y  R  L  S  Q  C  W  Q  V  I  S  Y  *  Y  I  A  H  K  E   : C  L  Q  G  G  S  Y  P  R  R  D  *  S  V  A  V  H  Y  T  H  K  E  D  I  L  D  *  L  S  W  C  S  L  S  E  S  *  F  R  N  R  Y  S  L  E  G  R   : G  T  S  D  K  P  T  *  C  F  *  T  H  *  R  S  V  E  S  R  *  E  G  A  S  *  K  S  L  *  D  R  E  L  :  G  *  R  V  *  L  S  S  T  A  M  Q  V  F  R  Q  T  S  E   : G  R  *  T  *  L  Q  Y  C  C  Q  D  G  S  P  *  L  A  K  R  Q  H  S  F  L  C  S  T  S  K  A  *  *  *  A  K  *  T  C  R  R  G  R  H  S  R  *  *  R  S  G  H  S  C  S  Q  S  Y  C  *  R  R  F  I  T  T  T  E  G  S  S  C  S  G  G  T  I  *  *  G  *  A  V  G  *  K  L  I  W  A  D  Y  P  L  D  L  Q  H  P  Q  F  W  N  R  V  F  V  Y  R  F  Y  N  L  L  V  G  S  I  A  F  P  E  F  S  S  P  R  R  D  *  Y  T  G  R  K  Y  R  Y  L  V  F  L  F  *  R  L  F  R  I  E  C  *  W  K  *  L  I  S  S  S  S  T  C  L  R  L  K  L  L  S  V  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0103N02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4893" stop="4761"/>
                    <exon start="4644" stop="4487"/>
                    <exon start="3990" stop="3889"/>
                    <exon start="3728" stop="3624"/>
                    <exon start="3462" stop="3334"/>
                    <exon start="2743" stop="2603"/>
                    <exon start="1640" stop="1540"/>
                    <exon start="1263" stop="1206"/>
                    <exon start="717" stop="457"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1185</number_coding_nucleotides>
                  <number_encoded_amino_acids>395</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQVKVHLLDNEPFADAFGPKTKRKRPKLMALDYEALVKKVDVSHDDFEDKHGASTSMDENADGFRDLVRHTMFEKGQSKRIWSELYKVIDSSDVVIQVLDARDPCGTRCYHLEKHLKENCKHKHMVLLLNKCDLVPAWATKGWLRVLSREYPTLAFHASVTKSFGKGSLLSVLRQFSRLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNHDSETDIVLKGVVRVTNLPDASEHISEVLNRVKKEHLKRAYKIENWVDEYDFLQQLCKSSGKLLKGGEPDYNTAAKMVLHDWQRGNIPFFVPPPKLDDEPNELVAEADTAVDNDQATAALKAIADVVSSQQLKEVPVQEELFSKAELLGEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="2405" e_stop="2064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2405" e_stop="2064" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2405" stop="2065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2405" stop="2065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2404" stop="2064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2404" stop="2064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTCCAGAGATGTGTTCTTATGGTGATTTGAGATCAAATATCCTCTTGTGTTCACTTTTTATAAGTACTTCAATTTTGTTTTCCTAGAAGTTCTTATTGTTGGCATTTTTTTAAAATGAAATTTTGGTCGCCAATGTTAATTTAGGCTAGCTACTAGGACAGCGCTTCTATGACTGGCATACATAGGATGATCTCATATAGTTATGATGTCGGAAGCATTTAGTCATGAATACATTTGGATAGGGGAAGATTGGAAACAAATCAATTGCAATGATGCTGTTGTGTGGATGCTGGTCTTCCCTACTTTGGAACTTCGATGATATTGCTCTGAAAGAGGTCCT</gDNA_template>
            <first_frame> N  S  R  D  V  F  L  W  *  F  E  I  K  Y  P  L  V  F  T  F  Y  K  Y  F  N  F  V  F  L  E  V  L  I  V  G  I  F  L  K  *  N  F  G  R  Q  C  *  F  R  L  A  T  R  T  A  L  L  *  L  A  Y  I  G  *  S  H  I  V  M  M  S  E  A  F  S  H  E  Y  I  W  I  G  E  D  W  K  Q  I  N  C  N  D  A  V  V  W  M  L  V  F  P  T  L  E  L  R  *  Y  C  S  E  R  G  P </first_frame>
            <second_frame>  I  P  E  M  C  S  Y  G  D  L  R  S  N  I  L  L  C  S  L  F  I  S  T  S  I  L  F  S  *  K  F  L  L  L  A  F  F  *  N  E  I  L  V  A  N  V  N  L  G  *  L  L  G  Q  R  F  Y  D  W  H  T  *  D  D  L  I  *  L  *  C  R  K  H  L  V  M  N  T  F  G  *  G  K  I  G  N  K  S  I  A  M  M  L  L  C  G  C  W  S  S  L  L  W  N  F  D  D  I  A  L  K  E  V   </second_frame>
            <third_frame>   F  Q  R  C  V  L  M  V  I  *  D  Q  I  S  S  C  V  H  F  L  *  V  L  Q  F  C  F  P  R  S  S  Y  C  W  H  F  F  K  M  K  F  W  S  P  M  L  I  *  A  S  Y  *  D  S  A  S  M  T  G  I  H  R  M  I  S  Y  S  Y  D  V  G  S  I  *  S  *  I  H  L  D  R  G  R  L  E  T  N  Q  L  Q  *  C  C  C  V  D  A  G  L  P  Y  F  G  T  S  M  I  L  L  *  K  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0103N02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14791" PGL_stop="17351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14791" e_stop="15682"/>
            <exon e_start="16220" e_stop="16429"/>
            <exon e_start="17250" e_stop="17351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.966" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14791" e_stop="15682" e_length="892"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.877">
            <gDNA_intron_boundary i_start="15683" i_stop="16219" i_length="537"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16220" e_stop="16429" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.966">
            <gDNA_intron_boundary i_start="16430" i_stop="17249" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17250" e_stop="17351" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14791" stop="15136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15020" stop="15179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15024" stop="15571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15038" stop="15682"/>
              <exon start="16220" stop="16361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15039" stop="15528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15133" stop="15617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15133" stop="15482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15480" stop="15682"/>
              <exon start="16220" stop="16429"/>
              <exon start="17250" stop="17351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15480" stop="15682"/>
              <exon start="16220" stop="16429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15548" stop="15682"/>
              <exon start="16220" stop="16429"/>
              <exon start="17250" stop="17327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15548" stop="15682"/>
              <exon start="16220" stop="16429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16310" stop="16429"/>
              <exon start="17250" stop="17313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTGCCTGTAATTTGGTGTCTTTCCTAGTTGGACATTTTTGTCTGTAAATCTTTTTTTTTTCTCTGCCTTGCTTGTTAATCTTTAATACTTTATTCTTCAGTCAGCATTTTGGTTTATTAAAGCTTTAACTTTTAGTCGCTTTCATCTTTTTGCCACTTCTATATAAAGAAAAAAATTCCACTATTAGACTGTTTCTTTACCTACTTTTAGCTTAATTTCTTGTTTATCAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT : ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG : GTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCT</gDNA_template>
            <first_frame> H  C  L  *  F  G  V  F  P  S  W  T  F  L  S  V  N  L  F  F  F  S  A  L  L  V  N  L  *  Y  F  I  L  Q  S  A  F  W  F  I  K  A  L  T  F  S  R  F  H  L  F  A  T  S  I  *  R  K  K  F  H  Y  *  T  V  S  L  P  T  F  S  L  I  S  C  L  S  R  T  P  Q  L  N  F  H  S  *  I  R  Y  L  L  K  F  V  F  I  K  F  L  S  L  W  G  F  G  V  F  S  C  N  L  V  E  K  E  F  N  F  V  L  F  V  Q  V  C  V  L  G  L  L  F  L  D  D  L  F  R  L  R  L  *  D  F  P  T  K  S  F  I  F  L  F  N  F  I  K  F  S  Y  I  *  Y  F  L  D  K  V  C  *  L  F  P  F  S  Y  K  R  L  F  L  *  R  E  N  G  G  S  F  E  V  N  F  N  G  G  F  A  S  T  F  D  S  *  N  I  D  V  R  S  I  S  C  Y  *  F  N  K  F  R  A  N  F  K  D  F  *  G  N  T  W  F  V  S  *  K  V  Q  V  F  G  R  L  C  C  F  S  A  L  W  I  E  F  N  L  C  F  F  A  L  *  C  S  G  R  A  V  D  A  M  *  R  Q  L  E  A  S  F  E  V  L  D  G  C  G  T  V  L  *  Y  G  *  N  F  C  R  Q   : Y  A  N  K  E  W  Q  V  S  H  T  A  N  Q  *  F  S  S  I  L  L  W  F  Q  F  M  R  R  P  W  S  W  A  *  N  N  S  V  C  G  I  Y  S  N  *  L  S  C  S  R  T  S  C  A  S  F  S  F  S  *  S  C  C  F  C  H  R  V  W  T   : G  V  H  M  W  R  *  L  I  I  L  L  W  A  *  R  H  W  T  P  N  L  Q  A  K  N  G  *  S  I  E  K  Y  S  </first_frame>
            <second_frame>  I  A  C  N  L  V  S  F  L  V  G  H  F  C  L  *  I  F  F  F  S  L  P  C  L  L  I  F  N  T  L  F  F  S  Q  H  F  G  L  L  K  L  *  L  L  V  A  F  I  F  L  P  L  L  Y  K  E  K  N  S  T  I  R  L  F  L  Y  L  L  L  A  *  F  L  V  Y  Q  G  P  L  N  S  I  F  I  H  R  S  D  I  C  S  N  L  C  L  *  S  S  Y  L  C  G  V  L  E  F  F  L  V  I  W  *  K  K  S  L  I  L  F  C  L  F  K  F  V  F  W  G  C  C  F  L  M  I  Y  F  D  L  D  Y  K  I  S  P  P  S  P  S  F  S  Y  S  I  S  S  N  F  L  T  S  D  I  F  L  I  K  C  V  N  C  F  H  F  R  I  K  D  C  F  C  E  G  K  M  G  D  R  L  R  S  T  L  M  E  D  L  P  V  H  L  I  L  E  I  L  M  C  G  R  L  A  V  I  D  L  I  S  L  E  L  T  S  R  T  F  R  G  T  H  G  L  F  P  K  K  F  K  S  L  V  D  Y  A  A  F  Q  L  C  G  L  S  S  I  Y  A  S  L  H  C  N  A  Q  E  E  L  L  T  R  C  N  G  N  W  K  R  L  L  R  F  L  M  A  V  E  Q  S  S  D  M  V  E  T  S  A  G  N  :  M  Q  I  R  S  G  R  Y  H  T  L  L  I  N  D  S  A  A  Y  S  C  G  S  S  L  C  G  V  L  G  H  G  P  E  T  T  Q  C  V  E  F  T  R  I  S  F  P  V  P  V  Q  V  A  Q  V  S  A  S  H  N  H  A  A  F  V  T  G  S  G  Q  :  V  F  T  C  G  D  N  S  S  F  C  C  G  H  R  D  T  G  R  P  I  F  R  P  R  M  V  E  A  L  K  N  I  P </second_frame>
            <third_frame>   L  P  V  I  W  C  L  S  *  L  D  I  F  V  C  K  S  F  F  F  L  C  L  A  C  *  S  L  I  L  Y  S  S  V  S  I  L  V  Y  *  S  F  N  F  *  S  L  S  S  F  C  H  F  Y  I  K  K  K  I  P  L  L  D  C  F  F  T  Y  F  *  L  N  F  L  F  I  K  D  P  S  T  Q  F  S  F  I  D  P  I  F  A  Q  I  C  V  Y  K  V  P  I  F  V  G  F  W  S  F  F  L  *  F  G  R  K  R  V  *  F  C  F  V  C  S  S  L  C  F  G  V  V  V  S  *  *  F  I  S  T  *  I  I  R  F  P  H  Q  V  L  H  F  L  I  Q  F  H  Q  I  F  L  H  L  I  F  S  *  *  S  V  L  I  V  S  I  F  V  *  K  I  V  F  V  K  G  K  W  G  I  V  *  G  Q  L  *  W  R  I  C  Q  Y  I  *  F  L  K  Y  *  C  A  V  D  *  L  L  L  I  *  *  V  *  S  *  L  Q  G  L  L  G  E  H  M  V  C  F  L  K  S  S  S  L  W  *  I  M  L  L  F  S  F  V  D  *  V  Q  S  M  L  L  C  I  V  M  L  R  K  S  C  *  R  D  V  T  A  I  G  S  V  F  *  G  S  *  W  L  W  N  S  P  L  I  W  L  K  L  L  Q  A  I :   C  K  *  G  V  A  G  I  T  H  C  *  S  M  I  Q  Q  H  T  L  V  V  P  V  Y  A  A  S  L  V  M  G  L  K  Q  L  S  V  W  N  L  L  E  L  A  F  L  F  P  Y  K  L  R  K  F  Q  L  L  I  I  M  L  L  L  S  Q  G  L  D  R :   C  S  H  V  E  I  T  H  H  S  V  V  G  I  E  T  L  D  A  Q  S  S  G  Q  E  W  L  K  H  *  K  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0103N02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15131" stop="15682"/>
                    <exon start="16220" stop="16429"/>
                    <exon start="17250" stop="17351"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSLILFCLFKFVFWGCCFLMIYFDLDYKISPPSPSFSYSISSNFLTSDIFLIKCVNCFHFRIKDCFCEGKMGDRLRSTLMEDLPVHLILEILMCGRLAVIDLISLELTSRTFRGTHGLFPKKFKSLVDYAAFQLCGLSSIYASLHCNAQEELLTRCNGNWKRLLRFLMAVEQSSDMVETSAGNMQIRSGRYHTLLINDSAAYSCGSSLCGVLGHGPETTQCVEFTRISFPVPVQVAQVSASHNHAAFVTGSGQVFTCGDNSSFCCGHRDTGRPIFRPRMVEALKNIP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 135 chains have been computed
$ 
$ memory statistics:
$ 264264 bytes spliced alignments in total
$ 121 spliced alignments have been stored
$ 2184 bytes was the average size of a spliced alignment
$ 12488 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 6244 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 145 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 02:21:46
-->
