<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 20:52:07"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0129L05-LkoWH/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0129L05-LkoWH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-LkoWH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7749" ref_strand="+" ref_description="SGN-M7749 C2_At3g15430 [cosii_markers]">
      <seq>caaggacccctcaactcaattttcattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtggggttttggagttttttcttgtaatttggtagaaaaagagtttaattttgttttgtttgttcaagtttgtgttttggggttgttgtttcttgatgatttatttcgacttagattataagatttccccaccaagtccttcattttcttattcaatttcatcaaattttcttacatctgatattttcttgataaagtgtgttaattgtttccattttcgtataaaagattgtttttgtgaagggaaaatgggggatcgtttgaggtcaactttaatggaggatttgccagtacatttgattcttgaaatattgatgtgcggtcgattagctgttattgatttaataagtttagagctaacttcaaggacttttaggggaacacatggtttgtttcctaaaaagttcaagtctttggtagattatgctgcttttcagctttgtggattgagttcaatctatgcttctttgcattgtaatgctcaggaagagctgttgacgcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggcaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcgcaagtttcagcttctcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcattctgttgtgggcatagagacactggacgcccaatcttcaggccaagaatggttgaagcattgaaaaatattcctgtcaagcaggttgctgcaggtctcagttttactatgtttctcactaggaaaggtcatgttttcacatgcggaacgaacggacatggtcaacttggtcatggtgacacatcggataggccaacaccgacatgtatagaactactcgcatctattggttctgtagttcagattgctgctggacctagttatgcacttgcagtgtctgatgatgggactctatactcttttgtttcgggtactaatttctgccttggtcatggagaacagcagaatgaactccagccacgtgcaatccagtcgtttaagaggaagggcattaatgtggctcgtgtttctgctggagatgagcatgttgtggcactggattccactggatatgtatatacttgggggaaaggttattgcggtgcattggggcatggtgatgagactgataagactactccgtcacacttgaccagccttaagagccatctagcagttcaggtttgtgcaagcaagaggaaaacgtttgtccttgtggacgatggttctgtttatggctttggctggatgggttttggtagcctcggattccttgacagaggagcatcagataaagttttgaagcctcgtatcctggagagcttgagatcccatcacatatctcaaatcagcactggcttataccacacagtagttgttacaaattgtggacgagtctttggatttggagacaacgaaagagcccaacttggacatgatgcagtaaggggatgccttgaacctacagaaatgtttatggagaaagcaataagtacaaaatattgactgaccaaacaaatattgtttctacatcgttatataacatttcaaaaaatgacttgaatgttttgtgattagatcttttgtaaagaacttttttgttgtatgatacaaaaaagacaaatcatacattattgtcttctgaagttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-LkoWH/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="9804" stop="4614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9504" g_stop="8842" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8841" i_stop="8305" i_length="537">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8304" g_stop="8095" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="873" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8094" i_stop="7275" i_length="820">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7274" g_stop="7164" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="984" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7163" i_stop="6171" i_length="993">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6170" g_stop="5802" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="985" r_stop="1353" r_length="369" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5801" i_stop="5676" i_length="126">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5675" g_stop="5568" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1354" r_stop="1461" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5567" i_stop="5388" i_length="180">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5387" g_stop="4914" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1462" r_stop="1935" r_length="474" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4913" i_stop="4848" i_length="66">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4847" g_stop="4836" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1936" r_stop="1947" r_length="12" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-M7749" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1947</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9504" e_stop="8842"/>
          <exon e_start="8304" e_stop="8095"/>
          <exon e_start="7274" e_stop="7164"/>
          <exon e_start="6170" e_stop="5802"/>
          <exon e_start="5675" e_stop="5568"/>
          <exon e_start="5387" e_stop="4914"/>
          <exon e_start="4847" e_stop="4836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATATATTGACTTTGAAAAATGCAAGAACTGCCACACCATGCCACTCTGCAAAAAATAATTCTTACTATTTTAGTATGAGTTGGACCTAAAACTTACCGGCATGGTGTGGTCAATAAAATGGGGCTAACCTTAGAGACTATTAACAAAAAATACTCGGTGAATTCTTCCTATTTGCTTAAGCTTTAGTATACAATGTTAGTCGATACTTCTATGTTTCTATCTAAGTGCTGATCAAATACTTCTGCTCACTTTTTCCTATCCCTTCTGGGGAAAATCAGTCATCATTCTGCCAATTTGTAATGGCTAGTGCTACTGCAATAAAATAAGATAGAAAAAAAATTTATATTTCGAGCAGATTGATGCACCTTACGATGAGAGAGCCTCTCAAGTTTTGTACCGCTTAGACATATCCCTTACGAAAGTCCACAGTAGGTTGCAATATTCGAAGTGTGTTAGAGAATCATTCTCTGTTGTAAATATGCTAAAAACTGCCATGTTTTGTCTACTTCTACAACATAGAATGTATATACATACTATTGCATTTTATATTATTCATGAGGTTTACAATTCTTGGTATAGGTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCTGTCAAGCAGGTAAATTTCTTTCTATCACGTCATGCCATCTAATTGACGGGATTACCTCAATACATGTTACAGATTTGGATTCTTTTTTGATGTTGTTGTTTTTGTTGAAAACTGTAAGTTCAATAGAGATTGAGATTCTATACATGGTTTACGATTAAGTTGATCTTTTAGTTCTGCTAGATCAATTTATGGGAATAAATGATACTGCGTCAAAATTTATTTGTTTGTTTGGAGGAGTACTGGTTAAGAAAAAAATGATGTGATGATTTGAAATATCTGCAACTTAGGAGGATTTTAGAGTCTGCCAGGAATTTCTGGTCTCTCTTATCAAGACCAACTACGAAAGAAAATAGGGAACCGAAGGATAAACTCCACTAAGTTTTAATAGCATAATTCAAGCTGTGAATGACATAAACACCTTCTTGTTCCTATGTTTTATTGCAATAAGCTTTCTGTCATTTCTTGAAATGCTTTTTGATAAAATTGGATCGACAAGCCACTCTTGAATAAATGAAGGCTAAAAATGAAAACGAGGTATTTTTAAGAGTTAGGCAACACCTATGACATGTCCATTAGTTTTAGTTGCAAATTGGAAATACCATTGTAGGTGTTACGGTGCTAATGCAGATCTAATTGGTTCCCAGCAATGTGTATGTGATGCTCTTCTGCATTTTTTCATTGTCTGTAAATGTTTTGGGTTCGTTTATCTTTAAAATTGGGCTTAATTTTGTAGTATCTTTGAAAAAGTACTCTCTCCATTTCAATTTATTTGTCTGATTTTGATTTGACACGGATTTTAAGAAAGTAAGGAAGATTTTTGAATAGGATATATTGAATGTATTAAAATGTCCTTTAATCTTATGCCTTAAACATTCCATGTGGTAAAGTTGGAAATAAAGAGTTGCCTAACACGGAAAGAACATTCTCTTTTAGACATACTAAAACGTGAAGCTGTTAAGTTTTGTCATAATACATTGCTCACTACTGTTGGAACTGGTTCAGGTTGCTGCAGGTCTCAGTTTTACTATGTTTCTCACTAGGAAAGGTCATGTTTTCACATGCGGAACGAACGGACATGGTCAACTTGGTCATGGTGACACATCGGATAGGCCAACACCGACATGTATAGAACTACTCGCATCTATTGGTTCTGTAGTTCAGATTGCTGCTGGACCTAGTTATGCACTTGCAGTGTCTGATGATGGGACTCTATACTCTTTTGGTTCGGGTACTAATTTCTGCCTTGGTCATGGAGAACAGCAGAATGAACTCCAGCCACGTGCAATCCAGTCGTTTAAGAGGAAGGGCATTAATGTGGCTCGTGTTTCTGCTGGAGATGAGCATGTTGTGGCACTGGATTCCACTGGATATGTAAGTCATAGTACCTAAAAAATAACACGATATTATAATTTCATTTAAGATGTATGCTAAGAGTTGGTTAACTGCAGAAAAGAATAAAGTGCTGTCACGACTGATGATTGATTTTCGTGATTTCAGGTATATACTTGGGGGAAAGGTTATTGCGGTGCATTGGGGCATGGTGATGAGACTGATAAGACTACTCCGTCACACTTGACCAGCCTTAAGAGCCATCTAGCAGTTCAGGTCTGGCATTCTTTTACTTTTGCTAGTCGATATTACAAAGATCAGTATTAACATTTGGAAACATGAAATAACTCAAATTAGTGTATAACGCCAGTAATATGATACAAAGTAATTCAAGGCTTGTAACATACATAACAGTCTTCCTCGTCCTAGCTTAATTTTGCCTGCCTCTATTGGTAGGTTTGTGCAAGCAAGAGGAAAACGTTTGTCCTTGTGGACGATGGTTCTGTTTATGGCTTTGGCTGGATGGGTTTTGGTAGCCTCGGATTCCTTGACAGAGGAGCATCAGATAAAGTTTTGAAGCCTCGTATCCTGGAGAGCTTGAGATCCCATCACATATCTCAAATCAGCACTGGCTTATACCACACAGTAGTTGTTACAAATTGTGGACGAGTCTTTGGATTTGGAGACAACGAAAGAGCCCAACTTGGACATGATGCAGTAAGGGGATGCCTTGAACCTACAGAAATGTTTATGGAGAAAGCAATAAGTACAAAATATTGACTGACCAAACAAATATTGTTTCTACATCGTTATATAACATTTCAAAAAATGACTTGAATGTTTTGTGATTAGATCTTTTGTAAAGAACTTTTTTGTTGTATGATACAAAAAAGACAAATCATACATTATTGTCTTCTGAAGTTCATTACAGCCTCTTTCTCGTTCCAGCTACAGAAGAGCAGAAAACAACATTAGATCATAGGTACAATTTCTAACCAAAAAAAAAAA</genome_strand>
        <mrna_strand>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCTGTCAAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGCAGGTCTCAGTTTTACTATGTTTCTCACTAGGAAAGGTCATGTTTTCACATGCGGAACGAACGGACATGGTCAACTTGGTCATGGTGACACATCGGATAGGCCAACACCGACATGTATAGAACTACTCGCATCTATTGGTTCTGTAGTTCAGATTGCTGCTGGACCTAGTTATGCACTTGCAGTGTCTGATGATGGGACTCTATACTCTTTTGTTTCGGGTACTAATTTCTGCCTTGGTCATGGAGAACAGCAGAATGAACTCCAGCCACGTGCAATCCAGTCGTTTAAGAGGAAGGGCATTAATGTGGCTCGTGTTTCTGCTGGAGATGAGCATGTTGTGGCACTGGATTCCACTGGATAT..............................................................................................................................GTATATACTTGGGGGAAAGGTTATTGCGGTGCATTGGGGCATGGTGATGAGACTGATAAGACTACTCCGTCACACTTGACCAGCCTTAAGAGCCATCTAGCAGTTCAG....................................................................................................................................................................................GTTTGTGCAAGCAAGAGGAAAACGTTTGTCCTTGTGGACGATGGTTCTGTTTATGGCTTTGGCTGGATGGGTTTTGGTAGCCTCGGATTCCTTGACAGAGGAGCATCAGATAAAGTTTTGAAGCCTCGTATCCTGGAGAGCTTGAGATCCCATCACATATCTCAAATCAGCACTGGCTTATACCACACAGTAGTTGTTACAAATTGTGGACGAGTCTTTGGATTTGGAGACAACGAAAGAGCCCAACTTGGACATGATGCAGTAAGGGGATGCCTTGAACCTACAGAAATGTTTATGGAGAAAGCAATAAGTACAAAATATTGACTGACCAAACAAATATTGTTTCTACATCGTTATATAACATTTCAAAAAATGACTTGAATGTTTTGTGATTAGATCTTTTGTAAAGAACTTTTTTGTTGTATGATACAAAAAAGACAAATCATACATTATTGTCTTCTGAAGTTAAAAAAA..................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-LkoWH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7749-2" ref_strand="+" ref_description="SGN-M7749-2 C2_At3g15430-2 [cosii_markers]">
      <seq>gcccccacaactcaattacctattcatagatccgatatttgctcaaatttgtgtttataaagttcctatctttgtggggttttggagttttttcttgtaatttgctagaaaaaagtttaattttgtttgtttgttcaagtttgtgctttggggttattgtttcttgatgatttatttcgacttagattataagatttccccgccaagtccttcattttcttattcaatttcatcgaattttcttacatctgataatttcttgataaagtgtgttgattgtttccattttcgtttaaaagattgtttttgtgaagggaaaatgggggatcgtttgaggtcaacttcaatggaggatttgccagtacatttgattcttgaaatattgatgtcgggtcgattagctgttattgatttaataagtttagagctaacttcaaggacttttaggggaacacatggtttgtttcctaaaaagttcaagtctttggtagattatgctgcttttcagctttgtggattgagttcaatctatgcttctttgcattgtaatgctcaggaagagctgttgaagcgatgtaacggcaattggaagcgtcttttgaggttcttgatggctgtggaacagtcctctgatatggttgaaacttctgcaggaaatatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcccaagtttcagcttcgcataatcatgctgcttttgtcacagggtctggacaggtgttcacatgtggagataactcatcatactgttgtgggcatagcgacactggacgcccaatcttcaggccaagaatggttgaagcattgaaaaatattcctgtcaagcaggttgctgtttgtctcagttttactatgtttctcactaggaaaggtcatgttttcacatgcggaactaatggacatggtcaacttggtcatggtgacacatcggataggccaacaccgacatgcatagaattactggcctctattggttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-LkoWH/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="9800" stop="5720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9500" g_stop="8842" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8841" i_stop="8305" i_length="537">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8304" g_stop="8095" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="868" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8094" i_stop="7275" i_length="820">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7274" g_stop="7164" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="869" r_stop="979" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7163" i_stop="6171" i_length="993">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6170" g_stop="6020" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="980" r_stop="1130" r_length="151" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-M7749-2" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>1131</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7749-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9500" e_stop="8842"/>
          <exon e_start="8304" e_stop="8095"/>
          <exon e_start="7274" e_stop="7164"/>
          <exon e_start="6170" e_stop="6020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCCTCAACTCAATTTTC-ATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAATGTACTATTTCTTTGGAAAACTTGTTATTCGTTTATCAATGTTTACTTTGTTTGGTTGATTGCTATTTTTAGGACTAATAATATATGGTCGAAATGTTACTTATCAAATAGATGGATGAAATGTTTTCAGACACTATTTTTGTTGTTGTCAGTCAGATAGGGCCAAAAATGACACTTCTCGACCCCTTTTCGGCTTCTTCGTGTATTTACCTTATTGTATTTTGAACTCCTTAGTGAAAATTTGGACTCTTCAACTGGATGGAGCGCGTGATTCCTCTGCTTCACATATAGCAGTAGGTACTAGGCTATCTTTTTTTGTTTGGTTAAGGAATTGTATGTAAGGTTTAGTGAATTATTTAGTATTGCAATGAAATGGGACCAAATAGAATGGAATGGATAACGGTTTTATGATCGAGGTTTAGTTGCTGATTGATTTCTACCTTAATATTTCTAGATTTTAGTTACTCGCTTCTACTAGAATAGTCTGCAGCTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATATATTGACTTTGAAAAATGCAAGAACTGCCACACCATGCCACTCTGCAAAAAATAATTCTTACTATTTTAGTATGAGTTGGACCTAAAACTTACCGGCATGGTGTGGTCAATAAAATGGGGCTAACCTTAGAGACTATTAACAAAAAATACTCGGTGAATTCTTCCTATTTGCTTAAGCTTTAGTATACAATGTTAGTCGATACTTCTATGTTTCTATCTAAGTGCTGATCAAATACTTCTGCTCACTTTTTCCTATCCCTTCTGGGGAAAATCAGTCATCATTCTGCCAATTTGTAATGGCTAGTGCTACTGCAATAAAATAAGATAGAAAAAAAATTTATATTTCGAGCAGATTGATGCACCTTACGATGAGAGAGCCTCTCAAGTTTTGTACCGCTTAGACATATCCCTTACGAAAGTCCACAGTAGGTTGCAATATTCGAAGTGTGTTAGAGAATCATTCTCTGTTGTAAATATGCTAAAAACTGCCATGTTTTGTCTACTTCTACAACATAGAATGTATATACATACTATTGCATTTTATATTATTCATGAGGTTTACAATTCTTGGTATAGGTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCTGTCAAGCAGGTAAATTTCTTTCTATCACGTCATGCCATCTAATTGACGGGATTACCTCAATACATGTTACAGATTTGGATTCTTTTTTGATGTTGTTGTTTTTGTTGAAAACTGTAAGTTCAATAGAGATTGAGATTCTATACATGGTTTACGATTAAGTTGATCTTTTAGTTCTGCTAGATCAATTTATGGGAATAAATGATACTGCGTCAAAATTTATTTGTTTGTTTGGAGGAGTACTGGTTAAGAAAAAAATGATGTGATGATTTGAAATATCTGCAACTTAGGAGGATTTTAGAGTCTGCCAGGAATTTCTGGTCTCTCTTATCAAGACCAACTACGAAAGAAAATAGGGAACCGAAGGATAAACTCCACTAAGTTTTAATAGCATAATTCAAGCTGTGAATGACATAAACACCTTCTTGTTCCTATGTTTTATTGCAATAAGCTTTCTGTCATTTCTTGAAATGCTTTTTGATAAAATTGGATCGACAAGCCACTCTTGAATAAATGAAGGCTAAAAATGAAAACGAGGTATTTTTAAGAGTTAGGCAACACCTATGACATGTCCATTAGTTTTAGTTGCAAATTGGAAATACCATTGTAGGTGTTACGGTGCTAATGCAGATCTAATTGGTTCCCAGCAATGTGTATGTGATGCTCTTCTGCATTTTTTCATTGTCTGTAAATGTTTTGGGTTCGTTTATCTTTAAAATTGGGCTTAATTTTGTAGTATCTTTGAAAAAGTACTCTCTCCATTTCAATTTATTTGTCTGATTTTGATTTGACACGGATTTTAAGAAAGTAAGGAAGATTTTTGAATAGGATATATTGAATGTATTAAAATGTCCTTTAATCTTATGCCTTAAACATTCCATGTGGTAAAGTTGGAAATAAAGAGTTGCCTAACACGGAAAGAACATTCTCTTTTAGACATACTAAAACGTGAAGCTGTTAAGTTTTGTCATAATACATTGCTCACTACTGTTGGAACTGGTTCAGGTTGCTGCAGGTCTCAGTTTTACTATGTTTCTCACTAGGAAAGGTCATGTTTTCACATGCGGAACGAACGGACATGGTCAACTTGGTCATGGTGACACATCGGATAGGCCAACACCGACATGTATAGAACTACTCGCATCTATTGGTTCTG</genome_strand>
        <mrna_strand>GCCCCCACAACTCAATTACCTATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGCTAGAAAAA-AGTTTAATTTTG-TTTGTTTGTTCAAGTTTGTGCTTTGGGGTTATTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCGCCAAGTCCTTCATTTTCTTATTCAATTTCATCGAATTTTCTTACATCTGATAATTTCTTGATAAAGTGTGTTGATTGTTTCCATTTTCGTTTAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTCAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTCGGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGAAGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCCCAAGTTTCAGCTTCGCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCACATGTGGAGATAACTCATCATACTGTTGTGGGCATAGCGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCTGTCAAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTTTGTCTCAGTTTTACTATGTTTCTCACTAGGAAAGGTCATGTTTTCACATGCGGAACTAATGGACATGGTCAACTTGGTCATGGTGACACATCGGATAGGCCAACACCGACATGCATAGAATTACTGGCCTCTATTGGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-LkoWH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M175-R" ref_strand="+" ref_description="SGN-M175-R TG20-R [rflp_markers_reverse]">
      <seq>ttccaacagtagtgagcaatgtattatgacaaaacttaacagcttcacgttttagtatgtctaaaagagaatgttctttccgtgttaggcaactctttatttccaactttaccacatggaatgtttaaggcataagattaaaggacattttaatacattcaatatatcctattcaaaaatcttccttactttcttaaaatccgtgtcaaatcaaaatcagacaaataaattgaaatggagagagtactttttcaaagatactacaaaattaagcccaattttaaagataaacgaacccaaaacatttacagacaatgaaaaaatgcagaagagcatcacatacacattgctgggaaccaattagatctgcattagcaccgtaacacctacaatggtatttccaatttgcaactaaaactaatggacatgtcataggtgttgcctaactcttaaaaatacctcgttttcatttttagccttcatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-LkoWH/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="+" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="5880" stop="6966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6180" g_stop="6666" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="+" ref_id="SGN-M175-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M175-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6180" e_stop="6666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAACAGTAGTGAGCAATGTATTATGACAAAACTTAACAGCTTCACGTTTTAGTATGTCTAAAAGAGAATGTTCTTTCCGTGTTAGGCAACTCTTTATTTCCAACTTTACCACATGGAATGTTTAAGGCATAAGATTAAAGGACATTTTAATACATTCAATATATCCTATTCAAAAATCTTCCTTACTTTCTTAAAATCCGTGTCAAATCAAAATCAGACAAATAAATTGAAATGGAGAGAGTACTTTTTCAAAGATACTACAAAATTAAGCCCAATTTTAAAGATAAACGAACCCAAAACATTTACAGACAATGAAAAAATGCAGAAGAGCATCACATACACATTGCTGGGAACCAATTAGATCTGCATTAGCACCGTAACACCTACAATGGTATTTCCAATTTGCAACTAAAACTAATGGACATGTCATAGGTGTTGCCTAACTCTTAAAAATACCTCGTTTTCATTTTTAGCCTTCATTTAT</genome_strand>
        <mrna_strand>TTCCAACAGTAGTGAGCAATGTATTATGACAAAACTTAACAGCTTCACGTTTTAGTATGTCTAAAAGAGAATGTTCTTTCCGTGTTAGGCAACTCTTTATTTCCAACTTTACCACATGGAATGTTTAAGGCATAAGATTAAAGGACATTTTAATACATTCAATATATCCTATTCAAAAATCTTCCTTACTTTCTTAAAATCCGTGTCAAATCAAAATCAGACAAATAAATTGAAATGGAGAGAGTACTTTTTCAAAGATACTACAAAATTAAGCCCAATTTTAAAGATAAACGAACCCAAAACATTTACAGACAATGAAAAAATGCAGAAGAGCATCACATACACATTGCTGGGAACCAATTAGATCTGCATTAGCACCGTAACACCTACAATGGTATTTCCAATTTGCAACTAAAACTAATGGACATGTCATAGGTGTTGCCTAACTCTTAAAAATACCTCGTTTTCATTTTTAGCCTTCATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0129L05-LkoWH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M175-F" ref_strand="+" ref_description="SGN-M175-F TG20-F [rflp_markers_forward]">
      <seq>ctaggacttcatcttttgttattacttactgtaaaaagttcttggcagatgcaaataaggagtggcaggtatcacacactgctaatcaatgattcagcagcatactcttgtggttccagtttatgcggcgtccttggtcatgggcctgaaacaactcagtgtgtggaatttactcgaattagctttcctgttcccgtacaagttgcgcaagtttcagcttctcataatcatgctgcttttgtcacagggtctggacaggtttggcaatcggcgtatattatcaactactctcatttttattacagtaatttaccttttacgtgcactttgttttttgcatgcatgatgtggaaatcctcgttctgttgaggagtaaagtaaagaaggtgaaagaggaagaatgaaaatggagacaagcaatccaatcacattttcgtttttttgggaaattattttaggagaggttcctttgggagactgatactaatattgttgaaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0129L05-LkoWH/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0129L05.1" temp_strand="-" temp_description="C07HBa0129L05.1  AC217526.1 htgs_phase:3 submitted_to_sgn_as:gi|167900495|gb|AC217526.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0129L05, complete sequence">
        <position start="8652" stop="7551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8352" g_stop="7851" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0129L05.1" gen_strand="-" ref_id="SGN-M175-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0129L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M175-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8352" e_stop="7851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATA</genome_strand>
        <mrna_strand>CTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9504" PGL_stop="4836"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9504" e_stop="8842"/>
            <exon e_start="8304" e_stop="8095"/>
            <exon e_start="7274" e_stop="7164"/>
            <exon e_start="6170" e_stop="5802"/>
            <exon e_start="5675" e_stop="5568"/>
            <exon e_start="5387" e_stop="4914"/>
            <exon e_start="4847" e_stop="4836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.985" e_score="0.997"/>
          <exon-intron don_prob="0.993" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9504" e_stop="8842" e_length="663"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.877">
            <gDNA_intron_boundary i_start="8841" i_stop="8305" i_length="537"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8304" e_stop="8095" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.966">
            <gDNA_intron_boundary i_start="8094" i_stop="7275" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7274" e_stop="7164" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="7163" i_stop="6171" i_length="993"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="6170" e_stop="5802" e_length="369"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.985">
            <gDNA_intron_boundary i_start="5801" i_stop="5676" i_length="126"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5675" e_stop="5568" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.962">
            <gDNA_intron_boundary i_start="5567" i_stop="5388" i_length="180"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="5387" e_stop="4914" e_length="474"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4913" i_stop="4848" i_length="66"/>
          </intron>
          <exon e_serial="7" e_score="0.917">
            <gDNA_exon_boundary e_start="4847" e_stop="4836" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9504" stop="8842"/>
              <exon start="8304" stop="8095"/>
              <exon start="7274" stop="7164"/>
              <exon start="6170" stop="5802"/>
              <exon start="5675" stop="5568"/>
              <exon start="5387" stop="4914"/>
              <exon start="4847" stop="4836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9500" stop="8842"/>
              <exon start="8304" stop="8095"/>
              <exon start="7274" stop="7164"/>
              <exon start="6170" stop="6020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7749-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGGACCCCTCAACTCAATTTTCATTCATAGATCCGATATTTGCTCAAATTTGTGTTTATAAAGTTCCTATCTTTGTGGGGTTTTGGAGTTTTTTCTTGTAATTTGGTAGAAAAAGAGTTTAATTTTGTTTTGTTTGTTCAAGTTTGTGTTTTGGGGTTGTTGTTTCTTGATGATTTATTTCGACTTAGATTATAAGATTTCCCCACCAAGTCCTTCATTTTCTTATTCAATTTCATCAAATTTTCTTACATCTGATATTTTCTTGATAAAGTGTGTTAATTGTTTCCATTTTCGTATAAAAGATTGTTTTTGTGAAGGGAAAATGGGGGATCGTTTGAGGTCAACTTTAATGGAGGATTTGCCAGTACATTTGATTCTTGAAATATTGATGTGCGGTCGATTAGCTGTTATTGATTTAATAAGTTTAGAGCTAACTTCAAGGACTTTTAGGGGAACACATGGTTTGTTTCCTAAAAAGTTCAAGTCTTTGGTAGATTATGCTGCTTTTCAGCTTTGTGGATTGAGTTCAATCTATGCTTCTTTGCATTGTAATGCTCAGGAAGAGCTGTTGACGCGATGTAACGGCAATTGGAAGCGTCTTTTGAGGTTCTTGATGGCTGTGGAACAGTCCTCTGATATGGTTGAAACTTCTGCAGGCAAT : ATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAG : GTGTTCACATGTGGAGATAACTCATCATTCTGTTGTGGGCATAGAGACACTGGACGCCCAATCTTCAGGCCAAGAATGGTTGAAGCATTGAAAAATATTCCTGTCAAGCAG : GTTGCTGCAGGTCTCAGTTTTACTATGTTTCTCACTAGGAAAGGTCATGTTTTCACATGCGGAACGAACGGACATGGTCAACTTGGTCATGGTGACACATCGGATAGGCCAACACCGACATGTATAGAACTACTCGCATCTATTGGTTCTGTAGTTCAGATTGCTGCTGGACCTAGTTATGCACTTGCAGTGTCTGATGATGGGACTCTATACTCTTTTGGTTCGGGTACTAATTTCTGCCTTGGTCATGGAGAACAGCAGAATGAACTCCAGCCACGTGCAATCCAGTCGTTTAAGAGGAAGGGCATTAATGTGGCTCGTGTTTCTGCTGGAGATGAGCATGTTGTGGCACTGGATTCCACTGGATAT : GTATATACTTGGGGGAAAGGTTATTGCGGTGCATTGGGGCATGGTGATGAGACTGATAAGACTACTCCGTCACACTTGACCAGCCTTAAGAGCCATCTAGCAGTTCAG : GTTTGTGCAAGCAAGAGGAAAACGTTTGTCCTTGTGGACGATGGTTCTGTTTATGGCTTTGGCTGGATGGGTTTTGGTAGCCTCGGATTCCTTGACAGAGGAGCATCAGATAAAGTTTTGAAGCCTCGTATCCTGGAGAGCTTGAGATCCCATCACATATCTCAAATCAGCACTGGCTTATACCACACAGTAGTTGTTACAAATTGTGGACGAGTCTTTGGATTTGGAGACAACGAAAGAGCCCAACTTGGACATGATGCAGTAAGGGGATGCCTTGAACCTACAGAAATGTTTATGGAGAAAGCAATAAGTACAAAATATTGACTGACCAAACAAATATTGTTTCTACATCGTTATATAACATTTCAAAAAATGACTTGAATGTTTTGTGATTAGATCTTTTGTAAAGAACTTTTTTGTTGTATGATACAAAAAAGACAAATCATACATTATTGTCTTCTGAAGTTCATTACA : CAAAAAAAAAAA</gDNA_template>
            <first_frame> Q  G  P  L  N  S  I  F  I  H  R  S  D  I  C  S  N  L  C  L  *  S  S  Y  L  C  G  V  L  E  F  F  L  V  I  W  *  K  K  S  L  I  L  F  C  L  F  K  F  V  F  W  G  C  C  F  L  M  I  Y  F  D  L  D  Y  K  I  S  P  P  S  P  S  F  S  Y  S  I  S  S  N  F  L  T  S  D  I  F  L  I  K  C  V  N  C  F  H  F  R  I  K  D  C  F  C  E  G  K  M  G  D  R  L  R  S  T  L  M  E  D  L  P  V  H  L  I  L  E  I  L  M  C  G  R  L  A  V  I  D  L  I  S  L  E  L  T  S  R  T  F  R  G  T  H  G  L  F  P  K  K  F  K  S  L  V  D  Y  A  A  F  Q  L  C  G  L  S  S  I  Y  A  S  L  H  C  N  A  Q  E  E  L  L  T  R  C  N  G  N  W  K  R  L  L  R  F  L  M  A  V  E  Q  S  S  D  M  V  E  T  S  A  G  N  :  M  Q  I  R  S  G  R  Y  H  T  L  L  I  N  D  S  A  A  Y  S  C  G  S  S  L  C  G  V  L  G  H  G  P  E  T  T  Q  C  V  E  F  T  R  I  S  F  P  V  P  V  Q  V  A  Q  V  S  A  S  H  N  H  A  A  F  V  T  G  S  G  Q  :  V  F  T  C  G  D  N  S  S  F  C  C  G  H  R  D  T  G  R  P  I  F  R  P  R  M  V  E  A  L  K  N  I  P  V  K  Q  :  V  A  A  G  L  S  F  T  M  F  L  T  R  K  G  H  V  F  T  C  G  T  N  G  H  G  Q  L  G  H  G  D  T  S  D  R  P  T  P  T  C  I  E  L  L  A  S  I  G  S  V  V  Q  I  A  A  G  P  S  Y  A  L  A  V  S  D  D  G  T  L  Y  S  F  G  S  G  T  N  F  C  L  G  H  G  E  Q  Q  N  E  L  Q  P  R  A  I  Q  S  F  K  R  K  G  I  N  V  A  R  V  S  A  G  D  E  H  V  V  A  L  D  S  T  G  Y  :  V  Y  T  W  G  K  G  Y  C  G  A  L  G  H  G  D  E  T  D  K  T  T  P  S  H  L  T  S  L  K  S  H  L  A  V  Q  :  V  C  A  S  K  R  K  T  F  V  L  V  D  D  G  S  V  Y  G  F  G  W  M  G  F  G  S  L  G  F  L  D  R  G  A  S  D  K  V  L  K  P  R  I  L  E  S  L  R  S  H  H  I  S  Q  I  S  T  G  L  Y  H  T  V  V  V  T  N  C  G  R  V  F  G  F  G  D  N  E  R  A  Q  L  G  H  D  A  V  R  G  C  L  E  P  T  E  M  F  M  E  K  A  I  S  T  K  Y  *  L  T  K  Q  I  L  F  L  H  R  Y  I  T  F  Q  K  M  T  *  M  F  C  D  *  I  F  C  K  E  L  F  C  C  M  I  Q  K  R  Q  I  I  H  Y  C  L  L  K  F  I  T  :  Q  K  K  K </first_frame>
            <second_frame>  K  D  P  S  T  Q  F  S  F  I  D  P  I  F  A  Q  I  C  V  Y  K  V  P  I  F  V  G  F  W  S  F  F  L  *  F  G  R  K  R  V  *  F  C  F  V  C  S  S  L  C  F  G  V  V  V  S  *  *  F  I  S  T  *  I  I  R  F  P  H  Q  V  L  H  F  L  I  Q  F  H  Q  I  F  L  H  L  I  F  S  *  *  S  V  L  I  V  S  I  F  V  *  K  I  V  F  V  K  G  K  W  G  I  V  *  G  Q  L  *  W  R  I  C  Q  Y  I  *  F  L  K  Y  *  C  A  V  D  *  L  L  L  I  *  *  V  *  S  *  L  Q  G  L  L  G  E  H  M  V  C  F  L  K  S  S  S  L  W  *  I  M  L  L  F  S  F  V  D  *  V  Q  S  M  L  L  C  I  V  M  L  R  K  S  C  *  R  D  V  T  A  I  G  S  V  F  *  G  S  *  W  L  W  N  S  P  L  I  W  L  K  L  L  Q  A  I :   C  K  *  G  V  A  G  I  T  H  C  *  S  M  I  Q  Q  H  T  L  V  V  P  V  Y  A  A  S  L  V  M  G  L  K  Q  L  S  V  W  N  L  L  E  L  A  F  L  F  P  Y  K  L  R  K  F  Q  L  L  I  I  M  L  L  L  S  Q  G  L  D  R :   C  S  H  V  E  I  T  H  H  S  V  V  G  I  E  T  L  D  A  Q  S  S  G  Q  E  W  L  K  H  *  K  I  F  L  S  S  R :   L  L  Q  V  S  V  L  L  C  F  S  L  G  K  V  M  F  S  H  A  E  R  T  D  M  V  N  L  V  M  V  T  H  R  I  G  Q  H  R  H  V  *  N  Y  S  H  L  L  V  L  *  F  R  L  L  L  D  L  V  M  H  L  Q  C  L  M  M  G  L  Y  T  L  L  V  R  V  L  I  S  A  L  V  M  E  N  S  R  M  N  S  S  H  V  Q  S  S  R  L  R  G  R  A  L  M  W  L  V  F  L  L  E  M  S  M  L  W  H  W  I  P  L  D  M :   Y  I  L  G  G  K  V  I  A  V  H  W  G  M  V  M  R  L  I  R  L  L  R  H  T  *  P  A  L  R  A  I  *  Q  F  R :   F  V  Q  A  R  G  K  R  L  S  L  W  T  M  V  L  F  M  A  L  A  G  W  V  L  V  A  S  D  S  L  T  E  E  H  Q  I  K  F  *  S  L  V  S  W  R  A  *  D  P  I  T  Y  L  K  S  A  L  A  Y  T  T  Q  *  L  L  Q  I  V  D  E  S  L  D  L  E  T  T  K  E  P  N  L  D  M  M  Q  *  G  D  A  L  N  L  Q  K  C  L  W  R  K  Q  *  V  Q  N  I  D  *  P  N  K  Y  C  F  Y  I  V  I  *  H  F  K  K  *  L  E  C  F  V  I  R  S  F  V  K  N  F  F  V  V  *  Y  K  K  D  K  S  Y  I  I  V  F  *  S  S  L  H :   K  K  K   </second_frame>
            <third_frame>   R  T  P  Q  L  N  F  H  S  *  I  R  Y  L  L  K  F  V  F  I  K  F  L  S  L  W  G  F  G  V  F  S  C  N  L  V  E  K  E  F  N  F  V  L  F  V  Q  V  C  V  L  G  L  L  F  L  D  D  L  F  R  L  R  L  *  D  F  P  T  K  S  F  I  F  L  F  N  F  I  K  F  S  Y  I  *  Y  F  L  D  K  V  C  *  L  F  P  F  S  Y  K  R  L  F  L  *  R  E  N  G  G  S  F  E  V  N  F  N  G  G  F  A  S  T  F  D  S  *  N  I  D  V  R  S  I  S  C  Y  *  F  N  K  F  R  A  N  F  K  D  F  *  G  N  T  W  F  V  S  *  K  V  Q  V  F  G  R  L  C  C  F  S  A  L  W  I  E  F  N  L  C  F  F  A  L  *  C  S  G  R  A  V  D  A  M  *  R  Q  L  E  A  S  F  E  V  L  D  G  C  G  T  V  L  *  Y  G  *  N  F  C  R  Q   : Y  A  N  K  E  W  Q  V  S  H  T  A  N  Q  *  F  S  S  I  L  L  W  F  Q  F  M  R  R  P  W  S  W  A  *  N  N  S  V  C  G  I  Y  S  N  *  L  S  C  S  R  T  S  C  A  S  F  S  F  S  *  S  C  C  F  C  H  R  V  W  T   : G  V  H  M  W  R  *  L  I  I  L  L  W  A  *  R  H  W  T  P  N  L  Q  A  K  N  G  *  S  I  E  K  Y  S  C  Q  A   : G  C  C  R  S  Q  F  Y  Y  V  S  H  *  E  R  S  C  F  H  M  R  N  E  R  T  W  S  T  W  S  W  *  H  I  G  *  A  N  T  D  M  Y  R  T  T  R  I  Y  W  F  C  S  S  D  C  C  W  T  *  L  C  T  C  S  V  *  *  W  D  S  I  L  F  W  F  G  Y  *  F  L  P  W  S  W  R  T  A  E  *  T  P  A  T  C  N  P  V  V  *  E  E  G  H  *  C  G  S  C  F  C  W  R  *  A  C  C  G  T  G  F  H  W  I   : C  I  Y  L  G  E  R  L  L  R  C  I  G  A  W  *  *  D  *  *  D  Y  S  V  T  L  D  Q  P  *  E  P  S  S  S  S   : G  L  C  K  Q  E  E  N  V  C  P  C  G  R  W  F  C  L  W  L  W  L  D  G  F  W  *  P  R  I  P  *  Q  R  S  I  R  *  S  F  E  A  S  Y  P  G  E  L  E  I  P  S  H  I  S  N  Q  H  W  L  I  P  H  S  S  C  Y  K  L  W  T  S  L  W  I  W  R  Q  R  K  S  P  T  W  T  *  C  S  K  G  M  P  *  T  Y  R  N  V  Y  G  E  S  N  K  Y  K  I  L  T  D  Q  T  N  I  V  S  T  S  L  Y  N  I  S  K  N  D  L  N  V  L  *  L  D  L  L  *  R  T  F  L  L  Y  D  T  K  K  T  N  H  T  L  L  S  S  E  V  H  Y   : T  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0129L05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9393" stop="8842"/>
                    <exon start="8304" stop="8095"/>
                    <exon start="7274" stop="7164"/>
                    <exon start="6170" stop="5802"/>
                    <exon start="5675" stop="5568"/>
                    <exon start="5387" stop="5064"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1671</number_coding_nucleotides>
                  <number_encoded_amino_acids>557</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSLILFCLFKFVFWGCCFLMIYFDLDYKISPPSPSFSYSISSNFLTSDIFLIKCVNCFHFRIKDCFCEGKMGDRLRSTLMEDLPVHLILEILMCGRLAVIDLISLELTSRTFRGTHGLFPKKFKSLVDYAAFQLCGLSSIYASLHCNAQEELLTRCNGNWKRLLRFLMAVEQSSDMVETSAGNMQIRSGRYHTLLINDSAAYSCGSSLCGVLGHGPETTQCVEFTRISFPVPVQVAQVSASHNHAAFVTGSGQVFTCGDNSSFCCGHRDTGRPIFRPRMVEALKNIPVKQVAAGLSFTMFLTRKGHVFTCGTNGHGQLGHGDTSDRPTPTCIELLASIGSVVQIAAGPSYALAVSDDGTLYSFGSGTNFCLGHGEQQNELQPRAIQSFKRKGINVARVSAGDEHVVALDSTGYVYTWGKGYCGALGHGDETDKTTPSHLTSLKSHLAVQVCASKRKTFVLVDDGSVYGFGWMGFGSLGFLDRGASDKVLKPRILESLRSHHISQISTGLYHTVVVTNCGRVFGFGDNERAQLGHDAVRGCLEPTEMFMEKAISTKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8352" e_stop="7851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8352" e_stop="7851" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8352" stop="7851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M175-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAGGACTTCATCTTTTGTTATTACTTACTGTAAAAAGTTCTTGGCAGATGCAAATAAGGAGTGGCAGGTATCACACACTGCTAATCAATGATTCAGCAGCATACTCTTGTGGTTCCAGTTTATGCGGCGTCCTTGGTCATGGGCCTGAAACAACTCAGTGTGTGGAATTTACTCGAATTAGCTTTCCTGTTCCCGTACAAGTTGCGCAAGTTTCAGCTTCTCATAATCATGCTGCTTTTGTCACAGGGTCTGGACAGGTTTGGCAATCGGCGTATATTATCAACTACTCTCATTTTTATTACAGTAATTTACCTTTTACGTGCACTTTGTTTTTTGCATGCATGATGTGGAAATCCTCGTTCTGTTGAGGAGTAAAGTAAAGAAGGTGAAAGAGGAAGAATGAAAATGGAGACAAGCAATCCAATCACATTTTCGTTTTTTTGGGAAATTATTTTAGGAGAGGTTCCTTTGGGAGACTGATACTAATATTGTTGAAATATA</gDNA_template>
            <first_frame> L  G  L  H  L  L  L  L  L  T  V  K  S  S  W  Q  M  Q  I  R  S  G  R  Y  H  T  L  L  I  N  D  S  A  A  Y  S  C  G  S  S  L  C  G  V  L  G  H  G  P  E  T  T  Q  C  V  E  F  T  R  I  S  F  P  V  P  V  Q  V  A  Q  V  S  A  S  H  N  H  A  A  F  V  T  G  S  G  Q  V  W  Q  S  A  Y  I  I  N  Y  S  H  F  Y  Y  S  N  L  P  F  T  C  T  L  F  F  A  C  M  M  W  K  S  S  F  C  *  G  V  K  *  R  R  *  K  R  K  N  E  N  G  D  K  Q  S  N  H  I  F  V  F  L  G  N  Y  F  R  R  G  S  F  G  R  L  I  L  I  L  L  K  Y  </first_frame>
            <second_frame>  *  D  F  I  F  C  Y  Y  L  L  *  K  V  L  G  R  C  K  *  G  V  A  G  I  T  H  C  *  S  M  I  Q  Q  H  T  L  V  V  P  V  Y  A  A  S  L  V  M  G  L  K  Q  L  S  V  W  N  L  L  E  L  A  F  L  F  P  Y  K  L  R  K  F  Q  L  L  I  I  M  L  L  L  S  Q  G  L  D  R  F  G  N  R  R  I  L  S  T  T  L  I  F  I  T  V  I  Y  L  L  R  A  L  C  F  L  H  A  *  C  G  N  P  R  S  V  E  E  *  S  K  E  G  E  R  G  R  M  K  M  E  T  S  N  P  I  T  F  S  F  F  W  E  I  I  L  G  E  V  P  L  G  D  *  Y  *  Y  C  *  N  I </second_frame>
            <third_frame>   R  T  S  S  F  V  I  T  Y  C  K  K  F  L  A  D  A  N  K  E  W  Q  V  S  H  T  A  N  Q  *  F  S  S  I  L  L  W  F  Q  F  M  R  R  P  W  S  W  A  *  N  N  S  V  C  G  I  Y  S  N  *  L  S  C  S  R  T  S  C  A  S  F  S  F  S  *  S  C  C  F  C  H  R  V  W  T  G  L  A  I  G  V  Y  Y  Q  L  L  S  F  L  L  Q  *  F  T  F  Y  V  H  F  V  F  C  M  H  D  V  E  I  L  V  L  L  R  S  K  V  K  K  V  K  E  E  E  *  K  W  R  Q  A  I  Q  S  H  F  R  F  F  G  K  L  F  *  E  R  F  L  W  E  T  D  T  N  I  V  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0129L05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8352" stop="7984"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGLHLLLLLTVKSSWQMQIRSGRYHTLLINDSAAYSCGSSLCGVLGHGPETTQCVEFTRISFPVPVQVAQVSASHNHAAFVTGSGQVWQSAYIINYSHFYYSNLPFTCTLFFACMMWKSSFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6180" PGL_stop="6666"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6180" e_stop="6666"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6180" e_stop="6666" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6180" stop="6666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M175-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCAACAGTAGTGAGCAATGTATTATGACAAAACTTAACAGCTTCACGTTTTAGTATGTCTAAAAGAGAATGTTCTTTCCGTGTTAGGCAACTCTTTATTTCCAACTTTACCACATGGAATGTTTAAGGCATAAGATTAAAGGACATTTTAATACATTCAATATATCCTATTCAAAAATCTTCCTTACTTTCTTAAAATCCGTGTCAAATCAAAATCAGACAAATAAATTGAAATGGAGAGAGTACTTTTTCAAAGATACTACAAAATTAAGCCCAATTTTAAAGATAAACGAACCCAAAACATTTACAGACAATGAAAAAATGCAGAAGAGCATCACATACACATTGCTGGGAACCAATTAGATCTGCATTAGCACCGTAACACCTACAATGGTATTTCCAATTTGCAACTAAAACTAATGGACATGTCATAGGTGTTGCCTAACTCTTAAAAATACCTCGTTTTCATTTTTAGCCTTCATTTAT</gDNA_template>
            <first_frame> F  Q  Q  *  *  A  M  Y  Y  D  K  T  *  Q  L  H  V  L  V  C  L  K  E  N  V  L  S  V  L  G  N  S  L  F  P  T  L  P  H  G  M  F  K  A  *  D  *  R  T  F  *  Y  I  Q  Y  I  L  F  K  N  L  P  Y  F  L  K  I  R  V  K  S  K  S  D  K  *  I  E  M  E  R  V  L  F  Q  R  Y  Y  K  I  K  P  N  F  K  D  K  R  T  Q  N  I  Y  R  Q  *  K  N  A  E  E  H  H  I  H  I  A  G  N  Q  L  D  L  H  *  H  R  N  T  Y  N  G  I  S  N  L  Q  L  K  L  M  D  M  S  *  V  L  P  N  S  *  K  Y  L  V  F  I  F  S  L  H  L  </first_frame>
            <second_frame>  S  N  S  S  E  Q  C  I  M  T  K  L  N  S  F  T  F  *  Y  V  *  K  R  M  F  F  P  C  *  A  T  L  Y  F  Q  L  Y  H  M  E  C  L  R  H  K  I  K  G  H  F  N  T  F  N  I  S  Y  S  K  I  F  L  T  F  L  K  S  V  S  N  Q  N  Q  T  N  K  L  K  W  R  E  Y  F  F  K  D  T  T  K  L  S  P  I  L  K  I  N  E  P  K  T  F  T  D  N  E  K  M  Q  K  S  I  T  Y  T  L  L  G  T  N  *  I  C  I  S  T  V  T  P  T  M  V  F  P  I  C  N  *  N  *  W  T  C  H  R  C  C  L  T  L  K  N  T  S  F  S  F  L  A  F  I  Y </second_frame>
            <third_frame>   P  T  V  V  S  N  V  L  *  Q  N  L  T  A  S  R  F  S  M  S  K  R  E  C  S  F  R  V  R  Q  L  F  I  S  N  F  T  T  W  N  V  *  G  I  R  L  K  D  I  L  I  H  S  I  Y  P  I  Q  K  S  S  L  L  S  *  N  P  C  Q  I  K  I  R  Q  I  N  *  N  G  E  S  T  F  S  K  I  L  Q  N  *  A  Q  F  *  R  *  T  N  P  K  H  L  Q  T  M  K  K  C  R  R  A  S  H  T  H  C  W  E  P  I  R  S  A  L  A  P  *  H  L  Q  W  Y  F  Q  F  A  T  K  T  N  G  H  V  I  G  V  A  *  L  L  K  I  P  R  F  H  F  *  P  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0129L05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6268" stop="6543"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATLYFQLYHMECLRHKIKGHFNTFNISYSKIFLTFLKSVSNQNQTNKLKWREYFFKDTTKLSPILKINEPKTFTDNEKMQKSITYTLLGTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 12 chains have been computed
$ 
$ memory statistics:
$ 8896 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2224 bytes was the average size of a spliced alignment
$ 6984 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3492 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 12 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 20:52:11
-->
