<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:36:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347070" ref_strand="+" ref_description="SGN-E347070 [cTOF-25-B2]">
      <seq>actgagacagattatgtgttgaaaacagaaattccaggtgagtaaagagatttacttatttacttgagtttgtgttcgtttttttaggtcaaactcataaacagatttcttgttaggttttttttctttagatattttacctacgccatttttctattgaatcataaactactcatattttattcctttaaaacactgctaactgattttgattatttttcctattgtaaatgtattcaactgtgtttgtattgtaataattttgattgaagaaatgaagacaaattgtttgttagtctcatttgttttctaatgtgttcaaatgatttcgagtaaatacaattattctcgaacaatttcactatcaattggtctaatgagttctagaacaacatatgcatatctaccaatacccctaacaaaatctgatccacatcgatcaacggtgtttaaaaggaacaaaattatgggtgattcaataatttaataggaaaatagcctagttaaagtatttgagaaaaaacccaacaagtttataaatttgtttatatacttggccttttttttaatgtacgaacgaatttaaaatttaaattttataaattctgaattttatgagccccgactttacttgaatgtcatttagtggaacaatagcgttaaaattttaaaaatcctatatctgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="12486" stop="13775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12786" g_stop="13475" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E347070" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12786" e_stop="13475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGACAGATTATGTGTTGAAAACAGAAATTCCAGGTGAGTAAAGAGATTTACTTATTTACTTGAGTTTGTGTTCGTTTTTTTAGGTCAAACTCATAAACAGATTTCTTGTTAGGTTTTTTTTCTTTAGATATTTTACCTACGCCATTTTTCTATTGAATCATAAACTACTCATATTTTATTCCTTTAAAACACTGCTAACTGATTTTGATTATTTTTCCTATTGTAAATGTATTCAACTGTGTTTGTATTGTAATAATTTTGATTGAAGAAATGAAGACAAATTGTTTGTTAGTCTCATTTGTTTTCTAATGTGTTCAAATGATTTCGAGTAAATACAATTATTCTCGAACAATTTCACTATCAATTGGTCTAATGAGTTCTAGAACAACATATGCATATCTACCAATACCCCTAACAAAATCTGATCCACATCGATCAACGGTGTTTAAAAGGAACAAAATTATGGGTGATTCAATAATTTAATAGGAAAATAGCCTAGTTAAAGTATTTGAGAAAAAACCCAACAAGTTTATAAATTTGTTTATATACTTGGCCTTTTTTTTAATGTACGAACGAATTTAAAATTTAAATTTTATAAATTCTGAATTTTATGAGCCCCGACTTTACTTGAATGTCATTTAGTGGAACAATAGCGTTAAAATTTTAAAAAATCCTATATCTGACAA</genome_strand>
        <mrna_strand>ACTGAGACAGATTATGTGTTGAAAACAGAAATTCCAGGTGAGTAAAGAGATTTACTTATTTACTTGAGTTTGTGTTCGTTTTTTTAGGTCAAACTCATAAACAGATTTCTTGTTAGGTTTTTTTTCTTTAGATATTTTACCTACGCCATTTTTCTATTGAATCATAAACTACTCATATTTTATTCCTTTAAAACACTGCTAACTGATTTTGATTATTTTTCCTATTGTAAATGTATTCAACTGTGTTTGTATTGTAATAATTTTGATTGAAGAAATGAAGACAAATTGTTTGTTAGTCTCATTTGTTTTCTAATGTGTTCAAATGATTTCGAGTAAATACAATTATTCTCGAACAATTTCACTATCAATTGGTCTAATGAGTTCTAGAACAACATATGCATATCTACCAATACCCCTAACAAAATCTGATCCACATCGATCAACGGTGTTTAAAAGGAACAAAATTATGGGTGATTCAATAATTTAATAGGAAAATAGCCTAGTTAAAGTATTTGAGAAAAAACCCAACAAGTTTATAAATTTGTTTATATACTTGGCCTTTTTTTTAATGTACGAACGAATTTAAAATTTAAATTTTATAAATTCTGAATTTTATGAGCCCCGACTTTACTTGAATGTCATTTAGTGGAACAATAGCGTTAAAATTTT-AAAAATCCTATATCTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314192" ref_strand="+" ref_description="SGN-E314192 [cTOA-21-J14]">
      <seq>acaaatcaaaaccaaattaccaattagggttgcagagtgtgtgtgagagagaagacagtagaagataattaatcttttttttttgttctcaaattcatcagtgtgggtttctcagtttactgcaattcaaagcaacggtagtgaagtatttgggggatatagcttcgattacaatccacggacccactacttcaaagttcaaaaatccccaaatcaaatcgttgattttaacttctttgtcttttctctctcttctttatcatttcataattacgaatcttttttcagaatggctcctcccaggaaccagaacagagcgcctcttccttcaagtccttccaatagtaagtatgcgacagatgacataacagtagagaagaagaggaaaattgcgaatccgagaatgccgactgcagctactggtggtagaccaattaggcaagcatttgcagtggtgaatgcggctccagatctggctccagccagtggaccaccgagtactgctggttcagatggccctgtctttgagtttacaaaagaggatgttgaagctttactcggggagaaattgaaactaagaacaagtttaacactaaggaaaaatgtgatctcatgtcagaatacataagaagacttaagctttgcattaagtggttccagcagcttgaagaaaacatgtcacacaacaggcatcacttaaaagcttgttagagtcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="20432" stop="22154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20732" g_stop="21074" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21075" i_stop="21389" i_length="315">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21390" g_stop="21644" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="597" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21645" i_stop="21732" i_length="88">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21733" g_stop="21854" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="718" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E314192" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20732" e_stop="21074"/>
          <exon e_start="21390" e_stop="21644"/>
          <exon e_start="21733" e_stop="21854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATCAAAACCAAATTACCAATTAGGGTTGCAGAGTGTGTGTGAGAGAGAAGACAGTAGAAGATAATTAATCTTTTTTTTTTGTTCTCAAATTCATCAGTGTGGGTTTCTCAGTTTACTGCAATTCAAAGCAACGGTAGTGAAGTATTTGGGGGATATAGCTTCGATTACAATCCACGGACCCACTACTTCAAAGTTCAAAAATCCCCAAATCAAATCGTTGATTTTAACTTCTTTGTCTTTTCTCTCTCTTCTTTATCATTTCATAATTACGAATCTTTTTTCAGAATGGCTCCTCCCAGGAACCAGAACAGAGCGCCTCTTCCTTCAAGTCCTTCCAATGTAAGCAATCATTTCTTATGTATGTGAAGTTTTGTGTTTGTTTGGTTTATTTATGGAAGATTGAAGAACCCCATGTTTTGAATTTGGGTTTTATTTTGTGGGTGTTTTTGAATTTTTGTGTTTTCGGGTTTTTTTATTGATTGAAGAACCCCATGTTTTGTTCTTGGTGTTTAAAGTTGTGGTGTTTTTTGAATTTTTGTTTTTTTGGTCTTATTTTGATTAATTGAAGAATCCCATGTTTTGTTTTTGGGTTTTGATTTGTGGGTGTTTCTTAAGTTTGATTTTTGGGAGTTTTTGAATTTTTGGGTTTTGCAGAGTAAGTATGCGACAGATGACATAACAGTAGAGAAGAAGAGGAAAATTGCGAATCCGAGAATGCCGACTGCAGCTACTGGTGGTAGACCAATTAGGCAAGCATTTGCAGTGGTGAATGCGGCTCCAGATCTGGCTCCAGCCAGTGGACCACCGAGTACTGCTGGTTCAGATGGCCCTGTCTTTGAGTTTACAAAAGAGGATGTTGAAGCTTTACTCGGGGAGAAATTGAAAACTAAGAACAAGTTTAACACTAAGGTGAGATGTTGAATTGATTCTTCTGGTTAATTTACCATTACTTGCTAGGTTGTAGAAATGTTAATTTGATTTATATTGTTCCTATCAGGAAAAATGTGATCTCATGTCAGAATACATAAGAAGACTTAAGCTTTGCATTAAGTGGTTCCAGCAGCTTGAAGAAAACAATGTCACACAACAGGCATCACTTAAAAGCTTGTTAGAGTCAGC</genome_strand>
        <mrna_strand>ACAAATCAAAACCAAATTACCAATTAGGGTTGCAGAGTGTGTGTGAGAGAGAAGACAGTAGAAGATAATTAATCTTTTTTTTTTGTTCTCAAATTCATCAGTGTGGGTTTCTCAGTTTACTGCAATTCAAAGCAACGGTAGTGAAGTATTTGGGGGATATAGCTTCGATTACAATCCACGGACCCACTACTTCAAAGTTCAAAAATCCCCAAATCAAATCGTTGATTTTAACTTCTTTGTCTTTTCTCTCTCTTCTTTATCATTTCATAATTACGAATCTTTTTTCAGAATGGCTCCTCCCAGGAACCAGAACAGAGCGCCTCTTCCTTCAAGTCCTTCCAAT...........................................................................................................................................................................................................................................................................................................................AGTAAGTATGCGACAGATGACATAACAGTAGAGAAGAAGAGGAAAATTGCGAATCCGAGAATGCCGACTGCAGCTACTGGTGGTAGACCAATTAGGCAAGCATTTGCAGTGGTGAATGCGGCTCCAGATCTGGCTCCAGCCAGTGGACCACCGAGTACTGCTGGTTCAGATGGCCCTGTCTTTGAGTTTACAAAAGAGGATGTTGAAGCTTTACTCGGGGAGAAATTG-AAACTAAGAACAAGTTTAACACTAAG........................................................................................GAAAAATGTGATCTCATGTCAGAATACATAAGAAGACTTAAGCTTTGCATTAAGTGGTTCCAGCAGCTTGAAGAAAAC-ATGTCACACAACAGGCATCACTTAAAAGCTTGTTAGAGTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317276" ref_strand="+" ref_description="SGN-E317276 [cTOA-28-P19]">
      <seq>tcaagtccaggctctaagtgctgaattacttaaatataaggaatgtaatgggaaatctgttgctgagttagagaacatgacagtaagggcaaacgagctggaggcaagttgtctgtctcaatctgaacaaattaacagattgcaagaaaaacttacttttgcggagaagagattagagatgtccgacatgtcagcactcgaaaccagatcagaatatgaggagcaaaagaaagtaatttttgatttgcgtcagcgtcttgttgatgcagaaacaaaagttgtggaaggagagaaacttcggaaaaaattgcacaacactatactggaattgaaaggcaacatacgggttttctgtagagtgagacctttattatctgaagatggtgttggtgcagaagcaaatgtcgtctcttttccatcttcaatggaagcacaagggagaggcattgacttggcacaaaatggacaaaagcattccttcacgtttgacaaagttttcacgcccgaggcttcacaagaagatgtttttgttgagatatcccagcttgtacagagtgctcttgatggttataaggtttgcatatttgcttatggacaaactggttctggcaagacacatacaatgatgggcaacccagaaagtgcagagaataaaggactaataccccgcactttagaacaggtatttgagacccggcagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="22833" stop="24921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23133" g_stop="23235" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23236" i_stop="23321" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23322" g_stop="23396" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="178" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23397" i_stop="23499" i_length="103">
            <donor d_prob="0.342" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23500" g_stop="23646" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="325" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23647" i_stop="23720" i_length="74">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23721" g_stop="23859" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="464" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23860" i_stop="23966" i_length="107">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.760" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23967" g_stop="24076" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="574" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24077" i_stop="24491" i_length="415">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24492" g_stop="24621" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="704" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E317276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23133" e_stop="23235"/>
          <exon e_start="23322" e_stop="23396"/>
          <exon e_start="23500" e_stop="23646"/>
          <exon e_start="23721" e_stop="23859"/>
          <exon e_start="23967" e_stop="24076"/>
          <exon e_start="24492" e_stop="24621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCCAGGCTCTAAGTGCTGAATTACTTAAATATAAGGAATGTAATGGGAAATCTGTTGCTGAGTTAGAGAACATGACAGTAAGGGCAAACGAGCTGGAGGTCCGTCTTGTTTTATTTGTTTGTCTTAACTTACAAAGCAATATATATTTGTAGTAAACATCCTTCTTTCCTGGTTTTTTCATCAGGCAAGTTGTCTGTCTCAATCTGAACAAATTAACAGATTGCAAGAAAAACTTACTTTTGCGGAGAAGAGATTAGAGGTGCGTTACAATATGGCTCGAAAACACACTTTTGCTGTGTATATTGAGATTCATATACCTCATAAGTGTAATATTTCTCTTAAATATTTTACCGCTTTGTCAGATGTCCGACATGTCAGCACTCGAAACCAGATCAGAATATGAGGAGCAAAAGAAAGTAATTTTTGATTTGCGTCAGCGTCTTGTTGATGCAGAAACAAAAGTTGTGGAAGGAGAGAAACTTCGGAAAAAATTGCACAACACTATACTGGTAAAGTTCACATACATGATATGCAATTAATATCTTCAAAGTGCACTGTAAACTTAAGAATGTTTCTTATACAGGAATTGAAAGGCAACATACGGGTTTTCTGTAGAGTGAGACCTTTATTATCTGAAGATGGTGTTGGTGCAGAAGCAAATGTCGTCTCTTTTCCATCTTCAATGGAAGCACAAGGGAGAGGCATTGACTTGGCACAAAATGGTGAGTATGTGTTGTTTCTATCACATTTAACCAGATGTTATTTGTATTTCTGTAGAGTGCTCTTGATGGTTATCTGTTAACATTGATTTAATATTTCTATTACCAAGGACAAAAGCATTCCTTCACGTTTGACAAAGTTTTCACGCCCGAGGCTTCACAAGAAGATGTTTTTGTTGAGATATCCCAGCTTGTACAGAGTGCTCTTGATGGTTATAAGGTGATGTATTTTTAAACATTTGTACAGAGTGCTCTTGATGGTTATTTGAGTTACTCATTCTCTGCAAGTCTCGTGTTAATAAAGAAAAACAATTGATGTTTGCTGTCGTGTGATAGTTATCAGGTGATATATTTTTAAACTTTGTCTATGAATGCAAGTCAGTAGTCTCGCGTTAGTAAGGAAAAGCAAATGTTACTCTCAATGAAATGCTCTTAAGACCATAGAAATGTCATAGTATGTCTAAGGTCTTAAGTTCCAAGGATACTTTTGGTATGTGTCAAAGGCTTTCTTTCTTTCTTAATACTCTATGTCCAGACAAATGCCGTTGTATTCGTTTTTCTTTTGATATGTCAAATCGTTCAATTTATAAACTAAAAAAGCCTCATCCATAGCTGATTCTCATCTATTTTTTCAGGTTTGCATATTTGCTTATGGACAAACTGGTTCTGGCAAGACACATACAATGATGGGCAACCCAGAAAGTGCAGAGAATAAAGGACTAATACCCCGCACTTTAGAACAGGTATTTGAGACCCGGCAGTCTC</genome_strand>
        <mrna_strand>TCAAGTCCAGGCTCTAAGTGCTGAATTACTTAAATATAAGGAATGTAATGGGAAATCTGTTGCTGAGTTAGAGAACATGACAGTAAGGGCAAACGAGCTGGAG......................................................................................GCAAGTTGTCTGTCTCAATCTGAACAAATTAACAGATTGCAAGAAAAACTTACTTTTGCGGAGAAGAGATTAGAG.......................................................................................................ATGTCCGACATGTCAGCACTCGAAACCAGATCAGAATATGAGGAGCAAAAGAAAGTAATTTTTGATTTGCGTCAGCGTCTTGTTGATGCAGAAACAAAAGTTGTGGAAGGAGAGAAACTTCGGAAAAAATTGCACAACACTATACTG..........................................................................GAATTGAAAGGCAACATACGGGTTTTCTGTAGAGTGAGACCTTTATTATCTGAAGATGGTGTTGGTGCAGAAGCAAATGTCGTCTCTTTTCCATCTTCAATGGAAGCACAAGGGAGAGGCATTGACTTGGCACAAAATG...........................................................................................................GACAAAAGCATTCCTTCACGTTTGACAAAGTTTTCACGCCCGAGGCTTCACAAGAAGATGTTTTTGTTGAGATATCCCAGCTTGTACAGAGTGCTCTTGATGGTTATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCATATTTGCTTATGGACAAACTGGTTCTGGCAAGACACATACAATGATGGGCAACCCAGAAAGTGCAGAGAATAAAGGACTAATACCCCGCACTTTAGAACAGGTATTTGAGACCCGGCAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720145" ref_strand="+" ref_description="SGN-E720145 [FC09DG10]">
      <seq>aatcggccgaattgaattttaatttataaaaaaaatgccaatatgaaagaaaaaattatgaattttacccaaatacattttccgattcaaacagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28374" stop="32238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28663" g_stop="28967" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="368" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="446" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="609" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="31938" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="789" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E720145" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28663" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="31938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAGTTTTTTTTAATTTTAATTTATAAAAAAAATGCCAATATGAAAGAAAAAATTATGAATTTTACCCAAATACATTTTCCGATTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGAATTTTAATTTATAAAAAAAATGCCAATATGAAAGAAAAAATTATGAATTTTACCCAAATACATTTTCCGATTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273535" ref_strand="+" ref_description="SGN-E273535 [cLEN-6-M19]">
      <seq>aatacattttccgattcacacagcatttggaaaccctcattggagaatttaccgggagaattatttctttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtaccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggcgaatcatattaccccaaggaaagtggttctaacaaacgggcaatggttgaatcatgtgctccaacacgttccaaagcttgcagagagaaactgcgaatagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgctgatgctgctcgcttggtgacccatttacgtgatgaagctcatacgttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28434" stop="32095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28734" g_stop="28967" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="298" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="376" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="539" r_length="163" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="31795" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="576" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E273535" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28734" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="31795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACATTTTCCGATTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGT-CCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGC</genome_strand>
        <mrna_strand>AATACATTTTCCGATTCACACAGCATTTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTCTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTACCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGCGAATCATATTACCCCAAGGAAAGTGGTTCTAACAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATGGTTGAATCATGTGCTCCAACACGTTCCAAAGCTTGCAGAGAGAAACTGCGAATAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGCTGATGCTGCTCGCTTGGTGACCCATTTACGTGATGAAGCTCATACGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275988" ref_strand="+" ref_description="SGN-E275988 [cLEN-12-H20]">
      <seq>tacattttccgattcaaacagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28436" stop="32124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28736" g_stop="28967" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="295" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="373" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="536" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="31824" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="602" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E275988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28736" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="31824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTTTCCGATTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAA</genome_strand>
        <mrna_strand>TACATTTTCCGATTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727880" ref_strand="+" ref_description="SGN-E727880 [LA16AB05]">
      <seq>catctttcgattcaaacagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28438" stop="32278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28738" g_stop="28967" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="293" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="371" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="534" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="31978" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="754" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E727880" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28738" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="31978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCCGATTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTG</genome_strand>
        <mrna_strand>CATCTTTCGATTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727980" ref_strand="+" ref_description="SGN-E727980 [LA16BD01]">
      <seq>ttccgattcaacacttattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaaagcagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaatcatgcctcctgctgctgttgatacttcacagggacacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28459" stop="32298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28742" g_stop="28967" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="288" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="366" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="529" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="31998" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="768" r_length="239" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E727980" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28742" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="31998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGATTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTC</genome_strand>
        <mrna_strand>TTCCGATTC-AACACTTATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAAGCAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAA-TCATGCCTCCTGCTGCTGTTGATACTTCACAGGGACACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252108" ref_strand="+" ref_description="SGN-E252108 [cLEG-8-G19]">
      <seq>ccgattcaaacagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28444" stop="31865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28744" g_stop="28967" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="287" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="365" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31565" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="516" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E252108" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28744" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATC</genome_strand>
        <mrna_strand>CCGATTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731361" ref_strand="+" ref_description="SGN-E731361 [LA26DF02]">
      <seq>catttaacagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccnatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttgatacttcacaggaccacgtcctccgtccntcagttgcttaacttgtcgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28452" stop="32330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28746" g_stop="28967" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="284" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="362" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="525" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="32030" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="797" r_length="272" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E731361" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28746" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="32030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGC</genome_strand>
        <mrna_strand>CATTTA-ACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCNATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCNTCAGTTGCTTAACTTGTCGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728576" ref_strand="+" ref_description="SGN-E728576 [LA18BA12]">
      <seq>actctacagcaattggaaaccctcattggagaatttaccgggacaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttgatacttcacaggaccacgtcctccgtcctccagttgcttaacttgtcgcagcttaatgcctacaaagggtgccttcactgtaccttaaattaatcgtctagtcaatgtcctccggttgtattagttttgggctcactccccttactgcatttggctgatgatagataagttgtgactttgaaactggcaacggtttaatgtttgctttgtgtaaaataaataaatttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28453" stop="32509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28747" g_stop="28967" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="283" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="361" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="524" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="32209" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="974" r_length="450" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E728576" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>976</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28747" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="32209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTT-GGCTCAACTCCCCTTACTGCATTTGGCTGATGATAGATAAGTTGTGACTTTGAAACTGGCAACGGTTTAATGTTTGCTTTGTGTAAAATTAAATAAATTTAAC</genome_strand>
        <mrna_strand>ACTC-TACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGACAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGGTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGGCTC-ACTCCCCTTACTGCATTTGGCTGATGATAGATAAGTTGTGACTTTGAAACTGGCAACGGTTTAATGTTTGCTTTGTGTAAAA-TAAATAAATTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709739" ref_strand="+" ref_description="SGN-E709739 [FA52DH11]">
      <seq>cgtctaacagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttgatacttcacaggaccacgtcctccgtcctccagttgcttaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28449" stop="32322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28747" g_stop="28967" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="284" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="362" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="525" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="32022" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="789" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E709739" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28747" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="32022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTT</genome_strand>
        <mrna_strand>CGTCTAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272735" ref_strand="+" ref_description="SGN-E272735 [cLEM-21-D7]">
      <seq>ttcaaacagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccgtagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacggcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctgntgtcgcgatgtggcaattcatgcctcctgctgctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28448" stop="32278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28748" g_stop="28967" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="283" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="361" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="524" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="31978" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="744" r_length="220" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E272735" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28748" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="31978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTG</genome_strand>
        <mrna_strand>TTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGTAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACGGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGNTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325543" ref_strand="+" ref_description="SGN-E325543 [cTOC-15-O9]">
      <seq>ttcaaacagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaatggcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28448" stop="32236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28748" g_stop="28967" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="283" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="361" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="524" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="31936" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="702" r_length="178" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E325543" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28748" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="31936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACC</genome_strand>
        <mrna_strand>TTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAATGGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327964" ref_strand="+" ref_description="SGN-E327964 [cTOC-22-F20]">
      <seq>ttcaaacagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28448" stop="32217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28748" g_stop="28967" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="283" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="361" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="524" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="31917" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="683" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E327964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28748" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="31917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTG</genome_strand>
        <mrna_strand>TTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305688" ref_strand="+" ref_description="SGN-E305688 [cLEX-14-N20]">
      <seq>ttcaaacagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28448" stop="31862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28748" g_stop="28967" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="283" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="361" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31562" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="509" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E305688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28748" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAG</genome_strand>
        <mrna_strand>TTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284132" ref_strand="+" ref_description="SGN-E284132 [cLER-13-D24]">
      <seq>tcaaacagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28449" stop="31847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28749" g_stop="28967" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="282" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="360" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31547" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="493" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E284132" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28749" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTG</genome_strand>
        <mrna_strand>TCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703716" ref_strand="+" ref_description="SGN-E703716 [FA22BB01]">
      <seq>gaggcagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttgatacttcacaggaccacgtcctccgtcctccagttgcttaacttgtcgcagcttaatgcctacaaagggtgccttcactgtaccttaatttatcgtctagtncatgtcctccggttgtattagttttggctcaactccccttactgcatttggctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28454" stop="32438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28750" g_stop="28967" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="281" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="359" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="522" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="32138" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="901" r_length="379" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E703716" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28750" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="32138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATG</genome_strand>
        <mrna_strand>GAGGCAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGGTGCCTTCACTGTACCTT-AATTTATCGTCTAGTNCATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731693" ref_strand="+" ref_description="SGN-E731693 [LA27DF05]">
      <seq>cgttcagcaattggaaaccctcattggagaatttaccgggacaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacgagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgacagctgaaaaggagaagctagagcaacaactaaagactacaagtgcccagcctagttacttgcctcctgctataccttctgcctttgctgctcatggtcaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28454" stop="32203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28750" g_stop="28967" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="281" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="359" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="522" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="31903" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="667" r_length="145" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E731693" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28750" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="31903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTC</genome_strand>
        <mrna_strand>CGTTCAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGACAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACGA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGACAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCCCAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCCTTTGCTGCTCATGGTCAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271866" ref_strand="+" ref_description="SGN-E271866 [cLEM-8-N15]">
      <seq>caaacagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28450" stop="32112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28750" g_stop="28967" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="281" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="359" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="522" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="31812" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="576" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E271866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28750" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="31812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAG</genome_strand>
        <mrna_strand>CAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371628" ref_strand="+" ref_description="SGN-E371628 [TUS-29-A2]">
      <seq>caaacagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccagagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28450" stop="31829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28750" g_stop="28967" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="281" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="359" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31529" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="474" r_length="115" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E371628" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28750" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAG</genome_strand>
        <mrna_strand>CAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAGAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731613" ref_strand="+" ref_description="SGN-E731613 [LA27CF05]">
      <seq>aaacagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttgatacttcacaggaccacgtcctccgtcctccagttgcttaacttgtcgcagcttaatgcctacaaaggttgccttcactgtaccttaaattaatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28451" stop="32375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28751" g_stop="28967" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="280" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="358" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="521" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="32075" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="838" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E731613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28751" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="32075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGT</genome_strand>
        <mrna_strand>AAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731317" ref_strand="+" ref_description="SGN-E731317 [LA26DB01]">
      <seq>cagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttgatacttcacaggaccacgtcctccgtccctcagttgcttaacttgtcgcagcttaatgcctacaaaggttgccttcactgtacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28454" stop="32363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28754" g_stop="28967" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="277" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="355" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="518" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="32063" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="823" r_length="305" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E731317" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28754" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="32063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCT</genome_strand>
        <mrna_strand>CAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCCTCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727932" ref_strand="+" ref_description="SGN-E727932 [LA16AG03]">
      <seq>cagcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactagagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaatgcagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttgatacttcacaggaccacgtcctccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28454" stop="32305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28754" g_stop="28967" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="277" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="355" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="518" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="32005" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="765" r_length="247" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E727932" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28754" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="32005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTC</genome_strand>
        <mrna_strand>CAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAGAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAATGCAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726817" ref_strand="+" ref_description="SGN-E726817 [LA12DF05]">
      <seq>agcaattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttgatacttcacaggaccacgtcctccgtcctccagttgcttaacttgtcgcagcttaatgcctacaaaggtttgcttcactgtaccttaaattaatcgtctagtcaatgtcctccggttgtattagttttggctcaactccccttactgcatttggctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28455" stop="32438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28755" g_stop="28967" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="276" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="354" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="517" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="32138" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="897" r_length="380" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E726817" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28755" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="32138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATG</genome_strand>
        <mrna_strand>AGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTTGCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306501" ref_strand="+" ref_description="SGN-E306501 [cLEX-13-I12]">
      <seq>caattggaaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28457" stop="31821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28757" g_stop="28967" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="274" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="352" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31521" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="459" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E306501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28757" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAG</genome_strand>
        <mrna_strand>CAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378391" ref_strand="+" ref_description="SGN-E378391 [TUS-29-A2]">
      <seq>aaaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaaatgacagttcatggaattgggtgcactccttgagcctggaagacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28464" stop="31755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28764" g_stop="28967" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="267" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="345" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31455" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="386" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E378391" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28764" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTG-AATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCC</genome_strand>
        <mrna_strand>AAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAAATGAC-A............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282553" ref_strand="+" ref_description="SGN-E282553 [cLER-18-L7]">
      <seq>aaccctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28465" stop="31826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28765" g_stop="28967" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="266" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="344" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31526" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="456" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E282553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28765" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAA</genome_strand>
        <mrna_strand>AACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347420" ref_strand="+" ref_description="SGN-E347420 [cTOF-33-I3]">
      <seq>ctcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacgncctagntacttgcctnctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28469" stop="32236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28769" g_stop="28967" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="262" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="340" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="503" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="31936" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="681" r_length="178" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E347420" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28769" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="31936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACC</genome_strand>
        <mrna_strand>CTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACGNCCTAGNTACTTGCCTNCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274773" ref_strand="+" ref_description="SGN-E274773 [cLEN-13-P18]">
      <seq>tcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28470" stop="32112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28770" g_stop="28967" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="261" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="339" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="502" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="31812" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="556" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E274773" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28770" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="31812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAG</genome_strand>
        <mrna_strand>TCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276913" ref_strand="+" ref_description="SGN-E276913 [cLEN-14-P18]">
      <seq>tcattggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28470" stop="31750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28770" g_stop="28967" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="261" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="339" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31450" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="375" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E276913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28770" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAG</genome_strand>
        <mrna_strand>TCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344241" ref_strand="+" ref_description="SGN-E344241 [cTOF-16-P16]">
      <seq>ttggagaatttaccgggagaattatttttttcatcttctggccggcgactgatcggagatggtttcaccggagagtaccaattggctttatgattacggattcgaagatagttgcgtccctgattcgaatttctcagcttctgcatctgggtttaactggtctgtgcagaatttgaatggttcaaggaatgttagttctgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagnnctagttacttgccttctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="28473" stop="32282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28773" g_stop="28967" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30610" g_stop="30672" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="258" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="336" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="499" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31759" g_stop="31982" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="724" r_length="225" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E344241" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28773" e_stop="28967"/>
          <exon e_start="30610" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="31982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAGGTATGTTAAGTTCTTAATTTTTTGTGACTCGGTGAAGTTCGGATCTTTTAGCTGATTTATGAATCTGTGATGTATCTGTTATTTAGGGAACAACTTTTTTTTCCCTCTATATGCTGTGAAGTTTACAACTTTAAGGTCTTTTTATGTACATTTGGAGTTGATTTGAGCCCAAAGAAAGTTTAATTTGGCACGATTTCTGTTATTATTTGTGTGTATTTAGAGTTGTATCCATCTAGCTCTACTTTCTCTTATTGTGATTTGATGCCACTGTATTACTTGTGTCTAAGTTAAGGATTGGAAACATTTTTTTTTCATTTGCCAGATGAAAAATTACAACTTCTAGAAGTGATGGAGTTGGATATCTACCTTCACAGAAAATATAGTTTAAATGTAGAACTATATACGACGGAAAATAGTATCTTGTAGAACTTTAGTCCTGTATGTTTATTTTAGAGTCTCGATTTCAACTATAGAACGGAGGCAAATGCTTTTAAGTATCAAATTACTGGAAGTTTTCTCTTTATCCAAGTTATAGAGATAGAAAGTTAATGGTCTTGAGTGCAACCTAGTATAAGTTGCCTTTAGTGGAGGAGCAGGTTGAAGATATAATGTCGCTGCATATTTTACTGTCTTCCCTCGCATGCTACCAACTTTTCATTGGAAACTTGCATTTAGCCTACTGATGTGCATCATCAGAACCTGGTAGTAGTGGCAGAGATTGGATAAGAAACAATACAAAGGAGGATGTACTGAGGATGGAGGATAGGAAAATACTTAGGTCAGAGCATCCAGTGTGCATAAAGAGGTAAACAGATATTAGCGCAGACATGATAACAAGGTTATAAAGGAATGAAGAATATATCGTTAAACATCGTTTTTGGAAGTAGAAAACTGGAAAAGCTTGGTCTAATGTGCAGAATCTTGACAGTTAATAGAGAAAGATATTACTTCTTAACTTATTGAGAACAGAAAGGGGGGAAAGCAGGGTGTAGAGTAGAAAGAGGAACTGATATGGAGGAGGAAGATAAGAAAAAAGATGTGTGTGGATATTGGAAGATAGACTGAAAAAAAGAAGGAAGAATAGAGGAGGAAGCTAAATAGCGAGGAGATGGTAAAGGAGAATACCAATTAGTGCTGCTGCTTCTAGAATCACCACAAGAACAATTATACCTCAAGTCTCTTACTAGTTGGGTCAGCTAATAATCCTCTATATTAATACTGATCTGTTTTGACCCATCTTATTACAATAGTCAATAATAGGTTTTTAAACACAAGCGTCCAAGGTTGTGGCCTAGACTAGTTGGTGTTGCCTGTATGCATTTTCCTAAAATTACTAGAATTGTTAATTAAGCATGAAATACAAAAATGTTGTTATCTTTGCTAAACTTAGCATGCTTTGTGTGTGTTTGGGGGGGGGGGGGTCATCGTGTCTTGTATCCAGTTGAATGACTAAAACTTTTCATCGTAAGCTGGATATGTTGGCTGGAAAAATAGAACAGTAGGGGTAAGTAGGGTTTCCATAAACATAATTTCCATTCTTTCATGTGCCTAGTTCTTCTATTTCATGTTAGCAATCAAAGGATATCTTCTTTCTATTGTTTTTTGACTTTGGTTTTTCCTTCTTTTTTGTGCTTGTTTCTAGTTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAG-CCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATAC</genome_strand>
        <mrna_strand>TTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGNNCTAGTTACTTGCCTTCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330887" ref_strand="+" ref_description="SGN-E330887 [cTOD-10-J6]">
      <seq>tgaaatcgatgggtcaattggtgaatcagattaccccaaggaaagtggttctaagaaacggtaagaatttttgccttttctgaacatttgtgctgatctccatcattgatgttgaataaagatgtggtgctgccctcaattgttaaatgtagtttaatttgattagcttctgtttcatataattattatttaaatctgtgaggtgacacatttcccactctctttctaagttttgagtttttttaaatccttttttattctgtgattcatcatcttgaaaaatctgttgtattctgcttctaactggcaagatttgagaatgtagaatccattaaaccgatttatatgttcttgatttaaaagcctgcataattcaagacatattcttaagtctctattcgaaagaattcactatgccctggcattcttcaagttcataaacgcttcaacattgtgtgatttaacatgtttcacgaagtcccactgatatattcctaatcctataattacaatgcaagttgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="30313" stop="31436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30613" g_stop="31136" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E330887" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30613" e_stop="31136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAAC</genome_strand>
        <mrna_strand>TGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311084" ref_strand="+" ref_description="SGN-E311084 [cLEZ-17-N20]">
      <seq>tcaattggtgaatcagattaccccaaggaaagtggttctaagaaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttgatacttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="30326" stop="32287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30626" g_stop="30672" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31261" g_stop="31338" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="125" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="288" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31759" g_stop="31987" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="517" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E311084" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30626" e_stop="30672"/>
          <exon e_start="31261" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="31987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAACGAATTTGTTGGTTGAAGTATTCCTTTTAGCTCCGGGGCCTCAATTTTACTGTTGAAAGGAAAGTCAGATGTCTTGACCTATATCTGTTTACTATTTTCTCTCACCATTTAGGTAATTGTTACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCAC</genome_strand>
        <mrna_strand>TCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267984" ref_strand="+" ref_description="SGN-E267984 [cLEI-15-M5]">
      <seq>aaacgggcaagggttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="30954" stop="32282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31256" g_stop="31338" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="246" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31759" g_stop="31982" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="470" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E267984" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31256" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="31982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATAC</genome_strand>
        <mrna_strand>AAACGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247966" ref_strand="+" ref_description="SGN-E247966 [cLEF-47-P6]">
      <seq>gttgaatcatgtgctccaacaagttccaaagcttgcagagagaaactgcgaagagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttgatacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="30968" stop="32285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31268" g_stop="31338" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="234" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31759" g_stop="31985" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="461" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E247966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31268" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="31985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTC</genome_strand>
        <mrna_strand>GTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732941" ref_strand="+" ref_description="SGN-E732941 [LB03CC02]">
      <seq>cgcatagataggctgaatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccgctattcttgttgatgctgttcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgcaagaaaagatcaaggagttaaaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttgatacttcacaggaccacgtcctccgtcctccagttgcttaacttgtcgcagcttaatgcctacaaaggttgccttcactgtaccttaaattaatcgtctagtcaatgtcctccggttgtattagttttggctcaactccccttactgcatttggctgatgatagataagttgtgactttgaaactggcaacggtttaatgtttgctttgtgtaaaattaaataaatttaactataaactgtatctacattttctcggttccattagctaaatactacccaacttataagaattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="31016" stop="32579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31316" g_stop="31338" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31415" g_stop="31577" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="186" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31759" g_stop="32282" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="710" r_length="524" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E732941" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31316" e_stop="31338"/>
          <exon e_start="31415" e_stop="31577"/>
          <exon e_start="31759" e_stop="32282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGAGATAGGCTGAATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAGGCTAGTATTAATTCCCTCGCAATGCTCCTAATAGAAAGTTGACTTTTTCTTAATCTTGCATCTGTCATTCCATTTGTTTAATGGTACCAAGGCTTTTCCATTTTGTAATGGTGACAAGACAAGCTAGAACATCACTTCACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATGATAGATAAGTTGTGACTTTGAAACTGGCAACGGTTTAATGTTTGCTTTGTGTAAAATTAAATAAATTTAACTATAAACTGTATCTACATTTTCTCGGTTCCATTAGCTAAATACTACCCAACTTATAAGAATTAATAAGAATTG</genome_strand>
        <mrna_strand>CGCATAGATAGGCTGAATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG.....................................................................................................................................................................................GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATGATAGATAAGTTGTGACTTTGAAACTGGCAACGGTTTAATGTTTGCTTTGTGTAAAATTAAATAAATTTAACTATAAACTGTATCTACATTTTCTCGGTTCCATTAGCTAAATACTACCCAACTTATAAGAATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267983" ref_strand="+" ref_description="SGN-E267983 [cLEI-15-M1]">
      <seq>aatgacaagttcatggaattgggtgcactccttgagcctggaagaccccctaaaacagacaaatccggtattcttgttgatgctgatcgcttggtgacccagttacgtgatgaagctcaaaagttgaaagactcaaacttgaatctgctagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="31106" stop="31862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31331" g_stop="31338" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31415" g_stop="31562" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="156" r_length="148" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E267983" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>156</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31331" e_stop="31338"/>
          <exon e_start="31415" e_stop="31562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACAAGTGATCTCACAACCCATTTCATAAAAACTTCTCCATTTATTTCATCCTTAATTGCTAAAATTGATCTACTTATCAGGTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAG</genome_strand>
        <mrna_strand>AATGACAA............................................................................GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGGTATTCTTGTTGATGCTGATCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCTAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353936" ref_strand="+" ref_description="SGN-E353936 [cTOS-10-H24]">
      <seq>actcttctgctcctgaacttcaagcatgtgttaacttgtgtaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttgatacttcacaggaccacgtcctccgtcctccagttgcttaacttgtcgcagcttaatgcctacaaaggttgccttcactgtaccttaaattaatcgtctagtcaatgtcctccggttgtattagttttggctcaactccccttactgcatttggctgatgatagataagttgtgactttgaaactggcaacggtttaatgtttgctttgtgtaaaattaaataaatttaactataaactgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="31416" stop="32520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31716" g_stop="32228" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E353936" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31716" e_stop="32228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATGATAGATAAGTTGTGACTTTGAAACTGGCAACGGTTTAATGTTTGCTTTGTGTAAAATTAAATAAATTTAACTATAAACTGTATCTACATT</genome_strand>
        <mrna_strand>ACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATGATAGATAAGTTGTGACTTTGAAACTGGCAACGGTTTAATGTTTGCTTTGTGTAAAATTAAATAAATTTAACTATAAACTGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353798" ref_strand="+" ref_description="SGN-E353798 [cTOS-10-O11]">
      <seq>tctgctcctgaacttcaagcatgtgttaacttgtgtaggttgagaaaaccgagcttcgagatgaaaaacacaggctgaaagctgaaaaggagaagctagagcaacaactaaagactacaagtgcacagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttgatacttcacaggaccacgtcctccgtcctccagttgcttaacttgtcgcagcttaatgcctacaaaggttgccttcactgtaccttaaattaatcgtctagtcaatgtcctccggttgtattagttttggctcaactccccttactgcatttggctgatgatagataagttgtgactttgaaactggcaacggtttaatgtttgctttgtgtaaaattaaataaatttaactataaactgtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="31421" stop="32520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31721" g_stop="32227" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E353798" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31721" e_stop="32227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATGATAGATAAGTTGTGACTTTGAAACTGGCAACGGTTTAATGTTTGCTTTGTGTAAAATTAAATAAATTTAACTATAAACTGTATCTACAT</genome_strand>
        <mrna_strand>TCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATGATAGATAAGTTGTGACTTTGAAACTGGCAACGGTTTAATGTTTGCTTTGTGTAAAATTAAATAAATTTAACTATAAACTGTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371701" ref_strand="+" ref_description="SGN-E371701 [TUS-29-A2](-)">
      <seq>ctatatcagcaagtaaagactacaagtgcgcagcctagttacttgcctcctgctataccttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctggtgtcgcaatgtggcaattcatgcctcctgctgctgttgatacttcacaggaccacgtcctccgtcctccagttgcttaacttgtcgcagcttaatgcctacaaaggttgccttcactgtaccttaaattaatcgtctagtcaatgtcctccggttgtattagttttggctcaactccccttactgcatttggctgatgatagataagttgtgactttgaaactggcaacggtttaatgtttgctttgtgtaaaattaaataaatttaactataaactgtatctacattttctcggttccattagctaaatactacccaacttataaaaaaaaataagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="31516" stop="32579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31816" g_stop="32286" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E371701" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31816" e_stop="32286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATGATAGATAAGTTGTGACTTTGAAACTGGCAACGGTTTAATGTTTGCTTTGTGTAAAATTAAATAAATTTAACTATAAACTGTATCTACATTTTCTCGGTTCCATTAGCTAAATACTACCCAACTTATAAGAATTAATAAGAATTGCTTC</genome_strand>
        <mrna_strand>CTATATCAGCAAGTAAAGACTACAAGTGCGCAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCAATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATGATAGATAAGTTGTGACTTTGAAACTGGCAACGGTTTAATGTTTGCTTTGTGTAAAATTAAATAAATTTAACTATAAACTGTATCTACATTTTCTCGGTTCCATTAGCTAAATACTACCCAACTTATAAAAAAAAATAAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551888" ref_strand="+" ref_description="SGN-E551888 [cTSB-2-C3]">
      <seq>accttctgcatttgctgctcatggtcaatttccaggaagcaagctggtgccaatcatgagttaccctggtgtcgcgatgtggcaattcatgcctcctgctgctgttgatacttcacaggaccacgtcctccgtcctccagttgcttaacttgtcgcagcttaatgcctacaaaggttgccttcactgtaccttaaattaatcgtctagtcaatgtcctccggttgtattagttttggctcaactccccttactgcatttggctgatgatagataagttgtgactttgaaactggcaacggtttaatgtttgctttgtgtaaaattaaataaatttaactataaactgtatctacattttctcggttccattagctaaatactacccaacttataagaattaataagaattgcttccttcgtttcgtttcaaaaaaaaaaaaaaaaaaaaattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="+" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="31572" stop="32601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31872" g_stop="32300" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="430" polyA_stop="451"/>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="+" ref_id="SGN-E551888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31872" e_stop="32300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATGATAGATAAGTTGTGACTTTGAAACTGGCAACGGTTTAATGTTTGCTTTGTGTAAAATTAAATAAATTTAACTATAAACTGTATCTACATTTTCTCGGTTCCATTAGCTAAATACTACCCAACTTATAAGAATTAATAAGAATTGCTTCCTTCGTTTCGTTTC</genome_strand>
        <mrna_strand>ACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATGATAGATAAGTTGTGACTTTGAAACTGGCAACGGTTTAATGTTTGCTTTGTGTAAAATTAAATAAATTTAACTATAAACTGTATCTACATTTTCTCGGTTCCATTAGCTAAATACTACCCAACTTATAAGAATTAATAAGAATTGCTTCCTTCGTTTCGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555169" ref_strand="+" ref_description="SGN-E555169 [cTSC-6-K12]">
      <seq>cagagatctattttcaatcatttgttgcagatgaggttaagataggcgatatttatgcttttggaggagagactgagatagaagaagttccaactcatttagtcgaggcgagatcaaaagatttagtcccagtttttgatttcattcaagcttccaagacccaaccagggagggtatctgttaacagtgacaatagccaacagtcacttcctaggctggaggtctccaattactgcaatcttatggctaatggtgttgatgaattgcatcattccatgactggtcccaggagtaaagttcactgcggccgagaagttaatgggttggatggtcttccaatgacaagtcaaactgctaatggctttgtaaatagtagtgagagccctaaagcggatgccgagctagattttgtaaataacatgaagtttgtaaataataacctagatggcgcagcattggaggatcatttcgaagatgaagtcgacggtgttgattaaaggtgttcgttattcgtttattacgcggaaggtttctgtaagtgttgatattgtggggggtggaaaatgtagagaagaaagaggttttaggctccttgattgacccaatgaacaaaatgtggatgctttaactttgtattgtagatatttagatatgaaacttatccaataaattagctgtaatgtgtaaanaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="-" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="41124" stop="39133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40909" g_stop="40905" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40904" i_stop="40819" i_length="86">
            <donor d_prob="0.624" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40818" g_stop="40652" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="172" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40651" i_stop="40160" i_length="492">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40159" g_stop="39833" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="499" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39832" i_stop="39625" i_length="208">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39624" g_stop="39434" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="690" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="691" polyA_stop="700"/>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="-" ref_id="SGN-E555169" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40909" e_stop="40905"/>
          <exon e_start="40818" e_stop="40652"/>
          <exon e_start="40159" e_stop="39833"/>
          <exon e_start="39624" e_stop="39434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGGTATTTGTGTGGTATCACAATTTTTCAGTAAATCTCATGCTTCGCGTAATGGTTGATATCTACTTTGTGCTTTTGTTGTGCTGCAGATCTATTTTCAATCATTTGTTGCAGATGAGGTTAAGATAGGCGATATTTATGCTTTTGGAGGAGAGACTGAGATAGAAGAAGTTCCAACTCATTTAGTCGAGGCGAGATCAAAAGATTTAGTCCCAGTTTTTGATTTCATTCAAGCTTCCAAGACCCAACCAGGGAGGTAATCAATCTTTTTTTTTTGGTGAATGAGTTGCCCTTGTTATAGAAAGTTGCCCAACAGTTTGGTTTGTTTGCAACAACATAACCAGGGCCTGGGGAGGTAGAATGTATGCAAACCTTACCCCTACCTTGTGGAGATAAGAGGATGTTCTTGAGGGTCAATAGACCCTCGGCTCTCAAAGTAGTTTGAAAATAGGAATATGGAAATGTTAGCAGTAACAACAACAAAAGGAAGTGCTAGGGGAACATAGTGCAAATTGAAGCAATGAAAACAACAGTAAGTTGATACTAAAATTGAAGAATACGATAGCAGGAGAGTAATAATAGCAAATACTGATCAGGGGATTTGGAACATGCATAACCTTCTGGCATGGCAATGACTGTTTCGTTGGTTAGCCATTAGTTGTTTACTGCTGCATTTTGTAATGTTTTGCCTATACTTGTTGGAAATTGGAATATGGTTTCTGTTTCTGAAGTTAAATGTTTGTTATAGGGTATCTGTTAACAGTGACAATAGCCAACAGTCACTTCCTAGGCTGGAGGTCTCCAATTACTGCAATCTTATGGCTAATGGTGTTGATGAATTGCATCATTCCATGACTGGTCCCAGGAGTAAAGTTCACTGCGGCCGAGAAGTTAATGGGTTGGATGGTCTTCCAATGACAAGTCAAACTGCTAATGGCTTTGTAAATAGTAGTGAGAGCCCTAAAGCGGATGCCGAGCTAGATTTTGTAAATAACATGAAGTTTGTAAATAATAACCTAGATGGCGCAGCATTGGAGGATCATTTCGAAGATGAAGTCGACGGTGTTGATTAAAGGTAACCGATTTTGCTTTTTACTTGTTTTCACTACTTCCTGCTGGCATTTTCAAGTCCTAGCACCCTCCCTTTCTTGTATTTAAGAGAGAAAGAGATCGCCAGAACCCGAGTTCAAATTACACCTTGTTTGTCTCATTTTATTAGTCATTTTTAATCTTTTTACATCTTCTTGCCAGTTGATTAATTCGTTGTCTTCTTATTTTCTCAGGTGTTCGTTATTCGTTTATTACGCGGAAGGTTTCTGTAAGTGTTGATATTGTGGGGGGTGGAAAATGTAGAGAAGAAAGAGGTTTTAGGCTCCTTGATTGACCCAATGAACAAAATGTGGATGCTTTAACTTTGTATTGTAGATATTTAGATATGAAACTTATCCAATAAATTAGCTGTAATGTGTAAATA</genome_strand>
        <mrna_strand>CAGAG......................................................................................ATCTATTTTCAATCATTTGTTGCAGATGAGGTTAAGATAGGCGATATTTATGCTTTTGGAGGAGAGACTGAGATAGAAGAAGTTCCAACTCATTTAGTCGAGGCGAGATCAAAAGATTTAGTCCCAGTTTTTGATTTCATTCAAGCTTCCAAGACCCAACCAGGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCTGTTAACAGTGACAATAGCCAACAGTCACTTCCTAGGCTGGAGGTCTCCAATTACTGCAATCTTATGGCTAATGGTGTTGATGAATTGCATCATTCCATGACTGGTCCCAGGAGTAAAGTTCACTGCGGCCGAGAAGTTAATGGGTTGGATGGTCTTCCAATGACAAGTCAAACTGCTAATGGCTTTGTAAATAGTAGTGAGAGCCCTAAAGCGGATGCCGAGCTAGATTTTGTAAATAACATGAAGTTTGTAAATAATAACCTAGATGGCGCAGCATTGGAGGATCATTTCGAAGATGAAGTCGACGGTGTTGATTAAAG................................................................................................................................................................................................................GTGTTCGTTATTCGTTTATTACGCGGAAGGTTTCTGTAAGTGTTGATATTGTGGGGGGTGGAAAATGTAGAGAAGAAAGAGGTTTTAGGCTCCTTGATTGACCCAATGAACAAAATGTGGATGCTTTAACTTTGTATTGTAGATATTTAGATATGAAACTTATCCAATAAATTAGCTGTAATGTGTAAANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378972" ref_strand="+" ref_description="SGN-E378972 [TUS-3-F22](-)">
      <seq>agaagaaaagagaagttctgatgaaagacatcatatgtatatatccgaagtggagcttgaaatgcataaacgtcagatttcactgtgggcaaaaccagagatctattttcaatcatttgttgcagatgaggttaagataggcgatatttatgcttttggaggagagactgagatagaagaagttccaactcatttagtcgaggcgagatcaaaagatttagtcccagtttttgatttcattcaagcttccaagacccaaccagggagggtatctgttaacagtgacaatagccaacagtcacttcctaggctggaggtctccaattactgcaatcttatggctaatggtgttgatgaattgcatcattccatgactggtcccaggagtaaagttcactgcggccgagaagttaatgggttggatggtcttccaatgacaagtcaaactgctaatggctttgtaaatagtagtgagagccctaaagcggatgccgagctagattttgtaaataacatgaagtttgtaaataataacctagatggcgcagcattggaggatcatttcgaagatgaagtcgacggtgttgattaaaggtgttcgttattcgtttattacgcggaaggtttctgtaagtgttgatattgtggggggtggaaaatgtagagaagaaagaggttttaggctccttgattgtcccaatgaacaagatgtggatgctttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="-" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="41304" stop="39196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41004" g_stop="40905" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40904" i_stop="40819" i_length="86">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40818" g_stop="40652" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="267" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40651" i_stop="40160" i_length="492">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40159" g_stop="39833" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="594" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39832" i_stop="39625" i_length="208">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39624" g_stop="39496" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="723" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="-" ref_id="SGN-E378972" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41004" e_stop="40905"/>
          <exon e_start="40818" e_stop="40652"/>
          <exon e_start="40159" e_stop="39833"/>
          <exon e_start="39624" e_stop="39496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAAAGAGAAGTTCTGATGAAAGACATCATATGTATATATCCGAAGTGGAGCTTGAAATGCATAAACGTCAGATTTCACTGTGGGCAAAACCAGAGGTATTTGTGTGGTATCACAATTTTTCAGTAAATCTCATGCTTCGCGTAATGGTTGATATCTACTTTGTGCTTTTGTTGTGCTGCAGATCTATTTTCAATCATTTGTTGCAGATGAGGTTAAGATAGGCGATATTTATGCTTTTGGAGGAGAGACTGAGATAGAAGAAGTTCCAACTCATTTAGTCGAGGCGAGATCAAAAGATTTAGTCCCAGTTTTTGATTTCATTCAAGCTTCCAAGACCCAACCAGGGAGGTAATCAATCTTTTTTTTTTGGTGAATGAGTTGCCCTTGTTATAGAAAGTTGCCCAACAGTTTGGTTTGTTTGCAACAACATAACCAGGGCCTGGGGAGGTAGAATGTATGCAAACCTTACCCCTACCTTGTGGAGATAAGAGGATGTTCTTGAGGGTCAATAGACCCTCGGCTCTCAAAGTAGTTTGAAAATAGGAATATGGAAATGTTAGCAGTAACAACAACAAAAGGAAGTGCTAGGGGAACATAGTGCAAATTGAAGCAATGAAAACAACAGTAAGTTGATACTAAAATTGAAGAATACGATAGCAGGAGAGTAATAATAGCAAATACTGATCAGGGGATTTGGAACATGCATAACCTTCTGGCATGGCAATGACTGTTTCGTTGGTTAGCCATTAGTTGTTTACTGCTGCATTTTGTAATGTTTTGCCTATACTTGTTGGAAATTGGAATATGGTTTCTGTTTCTGAAGTTAAATGTTTGTTATAGGGTATCTGTTAACAGTGACAATAGCCAACAGTCACTTCCTAGGCTGGAGGTCTCCAATTACTGCAATCTTATGGCTAATGGTGTTGATGAATTGCATCATTCCATGACTGGTCCCAGGAGTAAAGTTCACTGCGGCCGAGAAGTTAATGGGTTGGATGGTCTTCCAATGACAAGTCAAACTGCTAATGGCTTTGTAAATAGTAGTGAGAGCCCTAAAGCGGATGCCGAGCTAGATTTTGTAAATAACATGAAGTTTGTAAATAATAACCTAGATGGCGCAGCATTGGAGGATCATTTCGAAGATGAAGTCGACGGTGTTGATTAAAGGTAACCGATTTTGCTTTTTACTTGTTTTCACTACTTCCTGCTGGCATTTTCAAGTCCTAGCACCCTCCCTTTCTTGTATTTAAGAGAGAAAGAGATCGCCAGAACCCGAGTTCAAATTACACCTTGTTTGTCTCATTTTATTAGTCATTTTTAATCTTTTTACATCTTCTTGCCAGTTGATTAATTCGTTGTCTTCTTATTTTCTCAGGTGTTCGTTATTCGTTTATTACGCGGAAGGTTTCTGTAAGTGTTGATATTGTGGGGGGTGGAAAATGTAGAGAAGAAAGAGGTTTTAGGCTCCTTGATTGACCCAATGAACAAAATGTGGATGCTTTAA</genome_strand>
        <mrna_strand>AGAAGAAAAGAGAAGTTCTGATGAAAGACATCATATGTATATATCCGAAGTGGAGCTTGAAATGCATAAACGTCAGATTTCACTGTGGGCAAAACCAGAG......................................................................................ATCTATTTTCAATCATTTGTTGCAGATGAGGTTAAGATAGGCGATATTTATGCTTTTGGAGGAGAGACTGAGATAGAAGAAGTTCCAACTCATTTAGTCGAGGCGAGATCAAAAGATTTAGTCCCAGTTTTTGATTTCATTCAAGCTTCCAAGACCCAACCAGGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCTGTTAACAGTGACAATAGCCAACAGTCACTTCCTAGGCTGGAGGTCTCCAATTACTGCAATCTTATGGCTAATGGTGTTGATGAATTGCATCATTCCATGACTGGTCCCAGGAGTAAAGTTCACTGCGGCCGAGAAGTTAATGGGTTGGATGGTCTTCCAATGACAAGTCAAACTGCTAATGGCTTTGTAAATAGTAGTGAGAGCCCTAAAGCGGATGCCGAGCTAGATTTTGTAAATAACATGAAGTTTGTAAATAATAACCTAGATGGCGCAGCATTGGAGGATCATTTCGAAGATGAAGTCGACGGTGTTGATTAAAG................................................................................................................................................................................................................GTGTTCGTTATTCGTTTATTACGCGGAAGGTTTCTGTAAGTGTTGATATTGTGGGGGGTGGAAAATGTAGAGAAGAAAGAGGTTTTAGGCTCCTTGATTGTCCCAATGAACAAGATGTGGATGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372478" ref_strand="+" ref_description="SGN-E372478 [TUS-32-E6]">
      <seq>atatttcctgaacgaatgaaggtagaaaatggtctctattccaagattagcaatacaaccacagaagaaaagagaagttctgatgaaagacatcatatgtatatatccgaagtggagcttgaaatgcataaacgtcagatttcactgtgggcaaaaccagagatctattttcaatcatttgttgcagatgaggttaagataggcgatatttatgcttttggaggagagactgagatagaagaagttccaactcatttagtcgaggcgagatcaaaagatttagtcccagtttttgatttcattcaagcttccaagacccaaccagggagggtatctgttaacagtgacaatagccaacagtcacttcctaggctggaggtctccaattactgcaatcttatggctaatggtgttgatgaattgcatcattccatgactggtcccaggagtaaagttcactgcggccgagaagttaatgggttggatggtcttccaatgacaagtcaaactgctaatggctttgtaaatagtagtgagagccctaaagcggatgccgagctagattttgtaaataacatgaagtttgtaaataataacctagatggcgcagcattggaggatcatttcgaagatgaagtcgacggtgttgattaaaggtgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="-" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="41366" stop="39531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41066" g_stop="40905" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40904" i_stop="40819" i_length="86">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40818" g_stop="40652" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="329" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40651" i_stop="40160" i_length="492">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40159" g_stop="39833" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="656" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39832" i_stop="39625" i_length="208">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39624" g_stop="39619" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="662" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="-" ref_id="SGN-E372478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41066" e_stop="40905"/>
          <exon e_start="40818" e_stop="40652"/>
          <exon e_start="40159" e_stop="39833"/>
          <exon e_start="39624" e_stop="39619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTCCTGAACGAATGAAGGTAGAAAATGGTCTCTATTCCAAGATTAGCAATACAACCACAGAAGAAAAGAGAAGTTCTGATGAAAGACATCATATGTATATATCCGAAGTGGAGCTTGAAATGCATAAACGTCAGATTTCACTGTGGGCAAAACCAGAGGTATTTGTGTGGTATCACAATTTTTCAGTAAATCTCATGCTTCGCGTAATGGTTGATATCTACTTTGTGCTTTTGTTGTGCTGCAGATCTATTTTCAATCATTTGTTGCAGATGAGGTTAAGATAGGCGATATTTATGCTTTTGGAGGAGAGACTGAGATAGAAGAAGTTCCAACTCATTTAGTCGAGGCGAGATCAAAAGATTTAGTCCCAGTTTTTGATTTCATTCAAGCTTCCAAGACCCAACCAGGGAGGTAATCAATCTTTTTTTTTTGGTGAATGAGTTGCCCTTGTTATAGAAAGTTGCCCAACAGTTTGGTTTGTTTGCAACAACATAACCAGGGCCTGGGGAGGTAGAATGTATGCAAACCTTACCCCTACCTTGTGGAGATAAGAGGATGTTCTTGAGGGTCAATAGACCCTCGGCTCTCAAAGTAGTTTGAAAATAGGAATATGGAAATGTTAGCAGTAACAACAACAAAAGGAAGTGCTAGGGGAACATAGTGCAAATTGAAGCAATGAAAACAACAGTAAGTTGATACTAAAATTGAAGAATACGATAGCAGGAGAGTAATAATAGCAAATACTGATCAGGGGATTTGGAACATGCATAACCTTCTGGCATGGCAATGACTGTTTCGTTGGTTAGCCATTAGTTGTTTACTGCTGCATTTTGTAATGTTTTGCCTATACTTGTTGGAAATTGGAATATGGTTTCTGTTTCTGAAGTTAAATGTTTGTTATAGGGTATCTGTTAACAGTGACAATAGCCAACAGTCACTTCCTAGGCTGGAGGTCTCCAATTACTGCAATCTTATGGCTAATGGTGTTGATGAATTGCATCATTCCATGACTGGTCCCAGGAGTAAAGTTCACTGCGGCCGAGAAGTTAATGGGTTGGATGGTCTTCCAATGACAAGTCAAACTGCTAATGGCTTTGTAAATAGTAGTGAGAGCCCTAAAGCGGATGCCGAGCTAGATTTTGTAAATAACATGAAGTTTGTAAATAATAACCTAGATGGCGCAGCATTGGAGGATCATTTCGAAGATGAAGTCGACGGTGTTGATTAAAGGTAACCGATTTTGCTTTTTACTTGTTTTCACTACTTCCTGCTGGCATTTTCAAGTCCTAGCACCCTCCCTTTCTTGTATTTAAGAGAGAAAGAGATCGCCAGAACCCGAGTTCAAATTACACCTTGTTTGTCTCATTTTATTAGTCATTTTTAATCTTTTTACATCTTCTTGCCAGTTGATTAATTCGTTGTCTTCTTATTTTCTCAGGTGTTC</genome_strand>
        <mrna_strand>ATATTTCCTGAACGAATGAAGGTAGAAAATGGTCTCTATTCCAAGATTAGCAATACAACCACAGAAGAAAAGAGAAGTTCTGATGAAAGACATCATATGTATATATCCGAAGTGGAGCTTGAAATGCATAAACGTCAGATTTCACTGTGGGCAAAACCAGAG......................................................................................ATCTATTTTCAATCATTTGTTGCAGATGAGGTTAAGATAGGCGATATTTATGCTTTTGGAGGAGAGACTGAGATAGAAGAAGTTCCAACTCATTTAGTCGAGGCGAGATCAAAAGATTTAGTCCCAGTTTTTGATTTCATTCAAGCTTCCAAGACCCAACCAGGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCTGTTAACAGTGACAATAGCCAACAGTCACTTCCTAGGCTGGAGGTCTCCAATTACTGCAATCTTATGGCTAATGGTGTTGATGAATTGCATCATTCCATGACTGGTCCCAGGAGTAAAGTTCACTGCGGCCGAGAAGTTAATGGGTTGGATGGTCTTCCAATGACAAGTCAAACTGCTAATGGCTTTGTAAATAGTAGTGAGAGCCCTAAAGCGGATGCCGAGCTAGATTTTGTAAATAACATGAAGTTTGTAAATAATAACCTAGATGGCGCAGCATTGGAGGATCATTTCGAAGATGAAGTCGACGGTGTTGATTAAAG................................................................................................................................................................................................................GTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292914" ref_strand="+" ref_description="SGN-E292914 [cLET-11-D6]">
      <seq>atatttcctgaacgaatgaaggtagaaaatggtctctattccaagattagcaatacaaccacagaagaaaagagaagttctgatgaaagacatcatatgtatatatccgaagtggagcttgaaatgcataaacgtcagatttcactgtgggcaaaaccagagatctattttcaatcatttgttgcagatgaggttaagataggcgatatttatgcttttggaggagagactgagatagaagaagttccaactcatttagtcgaggcgagatcaaaagatttagtcccagtttttgatttcattcaagcttccaagacccaaccagggagggtatctgttaacagtgacaatagccaacagtcacttcctaggctggaggtctccaattactgcaatcttatggctaatggtgttgatgaattgcatcattccatgactggtcccaggagtaaagttcactgcggccgagaagttaatgggttggatggtcttccaatgacaagtcaaactgctaatggctttgtaaatagtagtgagagccctaaagcggatgccgagctagattttgtaaataacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="-" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="41366" stop="39610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41066" g_stop="40905" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40904" i_stop="40819" i_length="86">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40818" g_stop="40652" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="329" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40651" i_stop="40160" i_length="492">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40159" g_stop="39910" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="579" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="-" ref_id="SGN-E292914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41066" e_stop="40905"/>
          <exon e_start="40818" e_stop="40652"/>
          <exon e_start="40159" e_stop="39910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTCCTGAACGAATGAAGGTAGAAAATGGTCTCTATTCCAAGATTAGCAATACAACCACAGAAGAAAAGAGAAGTTCTGATGAAAGACATCATATGTATATATCCGAAGTGGAGCTTGAAATGCATAAACGTCAGATTTCACTGTGGGCAAAACCAGAGGTATTTGTGTGGTATCACAATTTTTCAGTAAATCTCATGCTTCGCGTAATGGTTGATATCTACTTTGTGCTTTTGTTGTGCTGCAGATCTATTTTCAATCATTTGTTGCAGATGAGGTTAAGATAGGCGATATTTATGCTTTTGGAGGAGAGACTGAGATAGAAGAAGTTCCAACTCATTTAGTCGAGGCGAGATCAAAAGATTTAGTCCCAGTTTTTGATTTCATTCAAGCTTCCAAGACCCAACCAGGGAGGTAATCAATCTTTTTTTTTTGGTGAATGAGTTGCCCTTGTTATAGAAAGTTGCCCAACAGTTTGGTTTGTTTGCAACAACATAACCAGGGCCTGGGGAGGTAGAATGTATGCAAACCTTACCCCTACCTTGTGGAGATAAGAGGATGTTCTTGAGGGTCAATAGACCCTCGGCTCTCAAAGTAGTTTGAAAATAGGAATATGGAAATGTTAGCAGTAACAACAACAAAAGGAAGTGCTAGGGGAACATAGTGCAAATTGAAGCAATGAAAACAACAGTAAGTTGATACTAAAATTGAAGAATACGATAGCAGGAGAGTAATAATAGCAAATACTGATCAGGGGATTTGGAACATGCATAACCTTCTGGCATGGCAATGACTGTTTCGTTGGTTAGCCATTAGTTGTTTACTGCTGCATTTTGTAATGTTTTGCCTATACTTGTTGGAAATTGGAATATGGTTTCTGTTTCTGAAGTTAAATGTTTGTTATAGGGTATCTGTTAACAGTGACAATAGCCAACAGTCACTTCCTAGGCTGGAGGTCTCCAATTACTGCAATCTTATGGCTAATGGTGTTGATGAATTGCATCATTCCATGACTGGTCCCAGGAGTAAAGTTCACTGCGGCCGAGAAGTTAATGGGTTGGATGGTCTTCCAATGACAAGTCAAACTGCTAATGGCTTTGTAAATAGTAGTGAGAGCCCTAAAGCGGATGCCGAGCTAGATTTTGTAAATAACATG</genome_strand>
        <mrna_strand>ATATTTCCTGAACGAATGAAGGTAGAAAATGGTCTCTATTCCAAGATTAGCAATACAACCACAGAAGAAAAGAGAAGTTCTGATGAAAGACATCATATGTATATATCCGAAGTGGAGCTTGAAATGCATAAACGTCAGATTTCACTGTGGGCAAAACCAGAG......................................................................................ATCTATTTTCAATCATTTGTTGCAGATGAGGTTAAGATAGGCGATATTTATGCTTTTGGAGGAGAGACTGAGATAGAAGAAGTTCCAACTCATTTAGTCGAGGCGAGATCAAAAGATTTAGTCCCAGTTTTTGATTTCATTCAAGCTTCCAAGACCCAACCAGGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCTGTTAACAGTGACAATAGCCAACAGTCACTTCCTAGGCTGGAGGTCTCCAATTACTGCAATCTTATGGCTAATGGTGTTGATGAATTGCATCATTCCATGACTGGTCCCAGGAGTAAAGTTCACTGCGGCCGAGAAGTTAATGGGTTGGATGGTCTTCCAATGACAAGTCAAACTGCTAATGGCTTTGTAAATAGTAGTGAGAGCCCTAAAGCGGATGCCGAGCTAGATTTTGTAAATAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274123" ref_strand="+" ref_description="SGN-E274123 [cLEN-8-M9]">
      <seq>acgaatgaaggtagaaaatggtctctattccaagattagcaatacaaccacagaagaaaagagaagttctgatgaaagacatcatatgtatatatccgaagtggagcttgaaatgcataaacgtcagatttcactgtgggcaaaaccagagatctattttcaatcatttgttgcagatgaggttaagataggcgatatttatgcttttggaggagagactgagatagaagaagttccaactcatttagtcgaggcgagatcaaaagatttagtcccagtttttgatttcattcaagcttccaagacccaaccagggagggtatctgttaacagtgacaatagccaacagtcacttcctaggctggaggtctccaattactgcaatcttatggctaatggtgttgatgaattgcatcattccatgactggtcccaggagtaaagttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="-" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="41355" stop="39729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41055" g_stop="40905" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40904" i_stop="40819" i_length="86">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40818" g_stop="40652" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="318" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40651" i_stop="40160" i_length="492">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40159" g_stop="40029" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="449" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="-" ref_id="SGN-E274123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41055" e_stop="40905"/>
          <exon e_start="40818" e_stop="40652"/>
          <exon e_start="40159" e_stop="40029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATGAAGGTAGAAAATGGTCTCTATTCCAAGATTAGCAATACAACCACAGAAGAAAAGAGAAGTTCTGATGAAAGACATCATATGTATATATCCGAAGTGGAGCTTGAAATGCATAAACGTCAGATTTCACTGTGGGCAAAACCAGAGGTATTTGTGTGGTATCACAATTTTTCAGTAAATCTCATGCTTCGCGTAATGGTTGATATCTACTTTGTGCTTTTGTTGTGCTGCAGATCTATTTTCAATCATTTGTTGCAGATGAGGTTAAGATAGGCGATATTTATGCTTTTGGAGGAGAGACTGAGATAGAAGAAGTTCCAACTCATTTAGTCGAGGCGAGATCAAAAGATTTAGTCCCAGTTTTTGATTTCATTCAAGCTTCCAAGACCCAACCAGGGAGGTAATCAATCTTTTTTTTTTGGTGAATGAGTTGCCCTTGTTATAGAAAGTTGCCCAACAGTTTGGTTTGTTTGCAACAACATAACCAGGGCCTGGGGAGGTAGAATGTATGCAAACCTTACCCCTACCTTGTGGAGATAAGAGGATGTTCTTGAGGGTCAATAGACCCTCGGCTCTCAAAGTAGTTTGAAAATAGGAATATGGAAATGTTAGCAGTAACAACAACAAAAGGAAGTGCTAGGGGAACATAGTGCAAATTGAAGCAATGAAAACAACAGTAAGTTGATACTAAAATTGAAGAATACGATAGCAGGAGAGTAATAATAGCAAATACTGATCAGGGGATTTGGAACATGCATAACCTTCTGGCATGGCAATGACTGTTTCGTTGGTTAGCCATTAGTTGTTTACTGCTGCATTTTGTAATGTTTTGCCTATACTTGTTGGAAATTGGAATATGGTTTCTGTTTCTGAAGTTAAATGTTTGTTATAGGGTATCTGTTAACAGTGACAATAGCCAACAGTCACTTCCTAGGCTGGAGGTCTCCAATTACTGCAATCTTATGGCTAATGGTGTTGATGAATTGCATCATTCCATGACTGGTCCCAGGAGTAAAGTTCACT</genome_strand>
        <mrna_strand>ACGAATGAAGGTAGAAAATGGTCTCTATTCCAAGATTAGCAATACAACCACAGAAGAAAAGAGAAGTTCTGATGAAAGACATCATATGTATATATCCGAAGTGGAGCTTGAAATGCATAAACGTCAGATTTCACTGTGGGCAAAACCAGAG......................................................................................ATCTATTTTCAATCATTTGTTGCAGATGAGGTTAAGATAGGCGATATTTATGCTTTTGGAGGAGAGACTGAGATAGAAGAAGTTCCAACTCATTTAGTCGAGGCGAGATCAAAAGATTTAGTCCCAGTTTTTGATTTCATTCAAGCTTCCAAGACCCAACCAGGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCTGTTAACAGTGACAATAGCCAACAGTCACTTCCTAGGCTGGAGGTCTCCAATTACTGCAATCTTATGGCTAATGGTGTTGATGAATTGCATCATTCCATGACTGGTCCCAGGAGTAAAGTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353988" ref_strand="+" ref_description="SGN-E353988 [cLHT-6-M1]">
      <seq>cagaaacagaatcgcaaagaacgaggtggtaatatggatatatatggtgaatttggagattctgataacagtaaaatatttcctgaacgaatgaaggtagaaaatggtctctattccaagattagcaatacaaccacagaagaaaagagaagttctgatgaaagacatcatatgtatatatccgaagtggagcttgaaatgcataaacgtcagatttcactgtgggcaaaaccagagatctattttcaatcatttgttgcagatgaggttaagataggcgatgtttatgcttttggaggagagtctgagatagaagaatttccaactcatttcgtcgaggcgagatcaaaagatttagtcccagtttttgatttcattcaagcttccaagacccaaccagggagggtatctgttaacagtgacaatagccaacagtcacttcctaggctggaggtctccaataactgcaatcttatggctaatggtgttgatgaattgcatcattccatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="-" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="41441" stop="39751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41141" g_stop="40905" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40904" i_stop="40819" i_length="86">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40818" g_stop="40652" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="404" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40651" i_stop="40160" i_length="492">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40159" g_stop="40051" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="513" r_length="109" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="-" ref_id="SGN-E353988" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41141" e_stop="40905"/>
          <exon e_start="40818" e_stop="40652"/>
          <exon e_start="40159" e_stop="40051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACAGAATCGCAAAGAACGAGGTGGTAATATGGATATATATGGTGAATTTGGAGATTCTGATAACAGTAAAATATTTCCTGAACGAATGAAGGTAGAAAATGGTCTCTATTCCAAGATTAGCAATACAACCACAGAAGAAAAGAGAAGTTCTGATGAAAGACATCATATGTATATATCCGAAGTGGAGCTTGAAATGCATAAACGTCAGATTTCACTGTGGGCAAAACCAGAGGTATTTGTGTGGTATCACAATTTTTCAGTAAATCTCATGCTTCGCGTAATGGTTGATATCTACTTTGTGCTTTTGTTGTGCTGCAGATCTATTTTCAATCATTTGTTGCAGATGAGGTTAAGATAGGCGATATTTATGCTTTTGGAGGAGAGACTGAGATAGAAGAAGTTCCAACTCATTTAGTCGAGGCGAGATCAAAAGATTTAGTCCCAGTTTTTGATTTCATTCAAGCTTCCAAGACCCAACCAGGGAGGTAATCAATCTTTTTTTTTTGGTGAATGAGTTGCCCTTGTTATAGAAAGTTGCCCAACAGTTTGGTTTGTTTGCAACAACATAACCAGGGCCTGGGGAGGTAGAATGTATGCAAACCTTACCCCTACCTTGTGGAGATAAGAGGATGTTCTTGAGGGTCAATAGACCCTCGGCTCTCAAAGTAGTTTGAAAATAGGAATATGGAAATGTTAGCAGTAACAACAACAAAAGGAAGTGCTAGGGGAACATAGTGCAAATTGAAGCAATGAAAACAACAGTAAGTTGATACTAAAATTGAAGAATACGATAGCAGGAGAGTAATAATAGCAAATACTGATCAGGGGATTTGGAACATGCATAACCTTCTGGCATGGCAATGACTGTTTCGTTGGTTAGCCATTAGTTGTTTACTGCTGCATTTTGTAATGTTTTGCCTATACTTGTTGGAAATTGGAATATGGTTTCTGTTTCTGAAGTTAAATGTTTGTTATAGGGTATCTGTTAACAGTGACAATAGCCAACAGTCACTTCCTAGGCTGGAGGTCTCCAATTACTGCAATCTTATGGCTAATGGTGTTGATGAATTGCATCATTCCATGACT</genome_strand>
        <mrna_strand>CAGAAACAGAATCGCAAAGAACGAGGTGGTAATATGGATATATATGGTGAATTTGGAGATTCTGATAACAGTAAAATATTTCCTGAACGAATGAAGGTAGAAAATGGTCTCTATTCCAAGATTAGCAATACAACCACAGAAGAAAAGAGAAGTTCTGATGAAAGACATCATATGTATATATCCGAAGTGGAGCTTGAAATGCATAAACGTCAGATTTCACTGTGGGCAAAACCAGAG......................................................................................ATCTATTTTCAATCATTTGTTGCAGATGAGGTTAAGATAGGCGATGTTTATGCTTTTGGAGGAGAGTCTGAGATAGAAGAATTTCCAACTCATTTCGTCGAGGCGAGATCAAAAGATTTAGTCCCAGTTTTTGATTTCATTCAAGCTTCCAAGACCCAACCAGGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCTGTTAACAGTGACAATAGCCAACAGTCACTTCCTAGGCTGGAGGTCTCCAATAACTGCAATCTTATGGCTAATGGTGTTGATGAATTGCATCATTCCATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208461" ref_strand="+" ref_description="SGN-E208461 [cLEC-37-N14]">
      <seq>tgatacaagattagtcgtagatgcaatacagaagtggaatatttgccagaaacagaatcgcaaagaacgaggtggtaatatggatatatatggtgaatttggagattctgataacagtaaaatatttcctgaacgaatgaaggtagaaaatggtctctattccaagattagcaatacaaccacagaagaaaagagaagttctgatgaaagacatcatatgtatatatccgaagtggagcttgaaatgcataaacgtcagatttcactgtgggcaaaaccagagatctattttcaatcatttgttgcagatgaggttaagataggcgatatttatgcttttggaggagagactgagatagaagaagttccaactcatttagtcgaggcgagatcaaaagatttagtcccagtttttgatttcattcaagcttccaagacccaaccagggagggtatctgttaacagtgacaatagccaacagtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="-" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="41487" stop="39825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41187" g_stop="40905" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40904" i_stop="40819" i_length="86">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40818" g_stop="40652" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="450" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40651" i_stop="40160" i_length="492">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40159" g_stop="40125" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="485" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="-" ref_id="SGN-E208461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41187" e_stop="40905"/>
          <exon e_start="40818" e_stop="40652"/>
          <exon e_start="40159" e_stop="40125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACAAGATTAGTCGTAGATGCAATACAGAAGTGGAATATTTGCCAGAAACAGAATCGCAAAGAACGAGGTGGTAATATGGATATATATGGTGAATTTGGAGATTCTGATAACAGTAAAATATTTCCTGAACGAATGAAGGTAGAAAATGGTCTCTATTCCAAGATTAGCAATACAACCACAGAAGAAAAGAGAAGTTCTGATGAAAGACATCATATGTATATATCCGAAGTGGAGCTTGAAATGCATAAACGTCAGATTTCACTGTGGGCAAAACCAGAGGTATTTGTGTGGTATCACAATTTTTCAGTAAATCTCATGCTTCGCGTAATGGTTGATATCTACTTTGTGCTTTTGTTGTGCTGCAGATCTATTTTCAATCATTTGTTGCAGATGAGGTTAAGATAGGCGATATTTATGCTTTTGGAGGAGAGACTGAGATAGAAGAAGTTCCAACTCATTTAGTCGAGGCGAGATCAAAAGATTTAGTCCCAGTTTTTGATTTCATTCAAGCTTCCAAGACCCAACCAGGGAGGTAATCAATCTTTTTTTTTTGGTGAATGAGTTGCCCTTGTTATAGAAAGTTGCCCAACAGTTTGGTTTGTTTGCAACAACATAACCAGGGCCTGGGGAGGTAGAATGTATGCAAACCTTACCCCTACCTTGTGGAGATAAGAGGATGTTCTTGAGGGTCAATAGACCCTCGGCTCTCAAAGTAGTTTGAAAATAGGAATATGGAAATGTTAGCAGTAACAACAACAAAAGGAAGTGCTAGGGGAACATAGTGCAAATTGAAGCAATGAAAACAACAGTAAGTTGATACTAAAATTGAAGAATACGATAGCAGGAGAGTAATAATAGCAAATACTGATCAGGGGATTTGGAACATGCATAACCTTCTGGCATGGCAATGACTGTTTCGTTGGTTAGCCATTAGTTGTTTACTGCTGCATTTTGTAATGTTTTGCCTATACTTGTTGGAAATTGGAATATGGTTTCTGTTTCTGAAGTTAAATGTTTGTTATAGGGTATCTGTTAACAGTGACAATAGCCAACAGTCAC</genome_strand>
        <mrna_strand>TGATACAAGATTAGTCGTAGATGCAATACAGAAGTGGAATATTTGCCAGAAACAGAATCGCAAAGAACGAGGTGGTAATATGGATATATATGGTGAATTTGGAGATTCTGATAACAGTAAAATATTTCCTGAACGAATGAAGGTAGAAAATGGTCTCTATTCCAAGATTAGCAATACAACCACAGAAGAAAAGAGAAGTTCTGATGAAAGACATCATATGTATATATCCGAAGTGGAGCTTGAAATGCATAAACGTCAGATTTCACTGTGGGCAAAACCAGAG......................................................................................ATCTATTTTCAATCATTTGTTGCAGATGAGGTTAAGATAGGCGATATTTATGCTTTTGGAGGAGAGACTGAGATAGAAGAAGTTCCAACTCATTTAGTCGAGGCGAGATCAAAAGATTTAGTCCCAGTTTTTGATTTCATTCAAGCTTCCAAGACCCAACCAGGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCTGTTAACAGTGACAATAGCCAACAGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379258" ref_strand="+" ref_description="SGN-E379258 [TUS-3-F22]">
      <seq>taattgttctcagcctgggaatgtttgtgtaaagttatcaggagctcctaatggtcattttcaagacgtagacagtgttggaatggtcatagtcagggacattgtcagcaaaactcttattgctcagtttagggcacataaaagtcctattgcagctttgtgctttgaccctagcactactcttctggtgactgcttcagttcaaggtcataacatcaatgtatttcggataatgcctggactatctgaaagtacttgtgctactgatcctggatcttcttatgtccatctgtataggctgcagcgtggactgactaacgcggtcatacaagacataagttttagtaatgatagccggtggattatgataagttcttccagaggaactagccatctttttgcggtatctccttcaggtggatcagttgattttcacacatctgatgcacgtcgtagtgcttgccctaatagctctggggtgatagcaacgcttgcagttcagagggctgtaatttctcagcaaagcattggtggatctggttcacctgtgacactttctgctgttggccggataaggagtggaggtaatggttggaaaaatactctaagtggtgctgctgctgctgctactggaaacgtgagctctctatctgggtccattgcttcagcttttcaatactacaacaaaaccataaccnatatacagatccagcctttcntaaattaattatcacctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="-" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="42640" stop="41004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42340" g_stop="42256" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42255" i_stop="42053" i_length="203">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42052" g_stop="41816" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="322" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41815" i_stop="41724" i_length="92">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41723" g_stop="41304" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="740" r_length="418" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="-" ref_id="SGN-E379258" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42340" e_stop="42256"/>
          <exon e_start="42052" e_stop="41816"/>
          <exon e_start="41723" e_stop="41304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTGTTCTCAGCCTGGGAATGTTTGTGTAAAGTTATCAGGAGCTCCTAATGGTCATTTTCAAGACGTAGACAGTGTTGGAATGGTATGAGTTACTCTCGTCAACTTTCTTTCAAAGATGTTGGTTTAAATTTTCGTGGCCATTTTAAGGCTCTCATGCCGTGTCTACTGTTCTGTGGACATCTATATATGCCCATAATTTGCCCTTTGTATTGTATTAGATATATAATACTGGCTTTGACCAGCATTGGACTCTAATCTAACTTGTCTGATCTTTTGCATCTGTAGGTCATAGTCAGGGACATTGTCAGCAAAACTCTTATTGCTCAGTTTAGGGCACATAAAAGTCCTATTGCAGCTTTGTGCTTTGACCCTAGCACTACTCTTCTGGTGACTGCTTCAGTTCAAGGTCATAACATCAATGTATTTCGGATAATGCCTGGACTATCTGAAAGTACTTGTGCTACTGATCCTGGATCTTCTTATGTCCATCTGTATAGGCTGCAGCGTGGACTGACTAACGCGGTAAGTATGCTTATGTTGCTTTCCCTTTTTTCTCGAGCTTGTTGCTTTTTGAGGATTGAAGTCAACTTTAATTTCCTTTTTAAACATCTCAGGTCATACAAGACATAAGTTTTAGTAATGATAGCCGGTGGATTATGATAAGTTCTTCCAGAGGAACTAGCCATCTTTTTGCGGTATCTCCTTCAGGTGGATCAGTTGATTTTCACACATCTGATGCACGTCGTAGTGCTTGCCCTAATAGCTCTGGGGTGATAGCAACGCTTGCAGTTCAGAGGGCTGTAATTTCTCAGCAAAGCATTGGTGGATCTGGTTCACCTGTGACACTTTCTGCTGTTGGCCGGATAAGGAGTGGAGGTAATGGTTGGAAAAATACTCTAAGTGGTGCTGCTGCTGCTGCTACTGGAAACGTGAGCTCTCTATCTGGGTCCATTGCTTCAGCTTTTCAATACTACAACAAAAACCATAACCAATATACAGATCCAGCCTTTCTAAAATTAAATTATCACCTGCTG</genome_strand>
        <mrna_strand>TAATTGTTCTCAGCCTGGGAATGTTTGTGTAAAGTTATCAGGAGCTCCTAATGGTCATTTTCAAGACGTAGACAGTGTTGGAATG...........................................................................................................................................................................................................GTCATAGTCAGGGACATTGTCAGCAAAACTCTTATTGCTCAGTTTAGGGCACATAAAAGTCCTATTGCAGCTTTGTGCTTTGACCCTAGCACTACTCTTCTGGTGACTGCTTCAGTTCAAGGTCATAACATCAATGTATTTCGGATAATGCCTGGACTATCTGAAAGTACTTGTGCTACTGATCCTGGATCTTCTTATGTCCATCTGTATAGGCTGCAGCGTGGACTGACTAACGCG............................................................................................GTCATACAAGACATAAGTTTTAGTAATGATAGCCGGTGGATTATGATAAGTTCTTCCAGAGGAACTAGCCATCTTTTTGCGGTATCTCCTTCAGGTGGATCAGTTGATTTTCACACATCTGATGCACGTCGTAGTGCTTGCCCTAATAGCTCTGGGGTGATAGCAACGCTTGCAGTTCAGAGGGCTGTAATTTCTCAGCAAAGCATTGGTGGATCTGGTTCACCTGTGACACTTTCTGCTGTTGGCCGGATAAGGAGTGGAGGTAATGGTTGGAAAAATACTCTAAGTGGTGCTGCTGCTGCTGCTACTGGAAACGTGAGCTCTCTATCTGGGTCCATTGCTTCAGCTTTTCAATACTACAAC-AAAACCATAACCNATATACAGATCCAGCCTTTCNTAAATT-AATTATCACCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208876" ref_strand="+" ref_description="SGN-E208876 [cLEC-51-F5]">
      <seq>taattgttctcagcctgggaatgtttgtgtaaagttatcaggagctcctaatggtcattttcaagacgtagacagtgttggaatggtcatagtcagggacattgtcagcaaaactcttattgctcagtttagggcacataaaagtcctattgcagctttgtgctttgaccctagcactactcttctggtgactgcttcagttcaaggtcataacatcaatgtatttcggataatgcctggactatctgaaagtacttgtgctactgatcctggatcttcttatgtccatctgtataggctgcagcgtggactgactaacgcggtcatacaagacataagttttagtaatgatagccggtggattatgataagttcttccagaggaactagccatctttttgcggtatctccttcaggtggatcagttgattttcacacatctgatgcacgtcgtagtgcttgccctaatagctctggggtgatagcaacgcttgcagttcagagggctgtaatttcttagcaaagcattggtggatctggttcacctgtgacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0130B18-y7R6i/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0130B18.1" temp_strand="-" temp_description="C07HBa0130B18.1  AC210356.2 htgs_phase:3 submitted_to_sgn_as:C07HBa0130B18 upload_account_name:france">
        <position start="42640" stop="41189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42340" g_stop="42256" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42255" i_stop="42053" i_length="203">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42052" g_stop="41816" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="322" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41815" i_stop="41724" i_length="92">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41723" g_stop="41489" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="557" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0130B18.1" gen_strand="-" ref_id="SGN-E208876" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0130B18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42340" e_stop="42256"/>
          <exon e_start="42052" e_stop="41816"/>
          <exon e_start="41723" e_stop="41489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTGTTCTCAGCCTGGGAATGTTTGTGTAAAGTTATCAGGAGCTCCTAATGGTCATTTTCAAGACGTAGACAGTGTTGGAATGGTATGAGTTACTCTCGTCAACTTTCTTTCAAAGATGTTGGTTTAAATTTTCGTGGCCATTTTAAGGCTCTCATGCCGTGTCTACTGTTCTGTGGACATCTATATATGCCCATAATTTGCCCTTTGTATTGTATTAGATATATAATACTGGCTTTGACCAGCATTGGACTCTAATCTAACTTGTCTGATCTTTTGCATCTGTAGGTCATAGTCAGGGACATTGTCAGCAAAACTCTTATTGCTCAGTTTAGGGCACATAAAAGTCCTATTGCAGCTTTGTGCTTTGACCCTAGCACTACTCTTCTGGTGACTGCTTCAGTTCAAGGTCATAACATCAATGTATTTCGGATAATGCCTGGACTATCTGAAAGTACTTGTGCTACTGATCCTGGATCTTCTTATGTCCATCTGTATAGGCTGCAGCGTGGACTGACTAACGCGGTAAGTATGCTTATGTTGCTTTCCCTTTTTTCTCGAGCTTGTTGCTTTTTGAGGATTGAAGTCAACTTTAATTTCCTTTTTAAACATCTCAGGTCATACAAGACATAAGTTTTAGTAATGATAGCCGGTGGATTATGATAAGTTCTTCCAGAGGAACTAGCCATCTTTTTGCGGTATCTCCTTCAGGTGGATCAGTTGATTTTCACACATCTGATGCACGTCGTAGTGCTTGCCCTAATAGCTCTGGGGTGATAGCAACGCTTGCAGTTCAGAGGGCTGTAATTTCTCAGCAAAGCATTGGTGGATCTGGTTCACCTGTGACACTTT</genome_strand>
        <mrna_strand>TAATTGTTCTCAGCCTGGGAATGTTTGTGTAAAGTTATCAGGAGCTCCTAATGGTCATTTTCAAGACGTAGACAGTGTTGGAATG...........................................................................................................................................................................................................GTCATAGTCAGGGACATTGTCAGCAAAACTCTTATTGCTCAGTTTAGGGCACATAAAAGTCCTATTGCAGCTTTGTGCTTTGACCCTAGCACTACTCTTCTGGTGACTGCTTCAGTTCAAGGTCATAACATCAATGTATTTCGGATAATGCCTGGACTATCTGAAAGTACTTGTGCTACTGATCCTGGATCTTCTTATGTCCATCTGTATAGGCTGCAGCGTGGACTGACTAACGCG............................................................................................GTCATACAAGACATAAGTTTTAGTAATGATAGCCGGTGGATTATGATAAGTTCTTCCAGAGGAACTAGCCATCTTTTTGCGGTATCTCCTTCAGGTGGATCAGTTGATTTTCACACATCTGATGCACGTCGTAGTGCTTGCCCTAATAGCTCTGGGGTGATAGCAACGCTTGCAGTTCAGAGGGCTGTAATTTCTTAGCAAAGCATTGGTGGATCTGGTTCACCTGTGACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>51</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12786" PGL_stop="13475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12786" e_stop="13475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="12786" e_stop="13475" e_length="690"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12786" stop="13475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGACAGATTATGTGTTGAAAACAGAAATTCCAGGTGAGTAAAGAGATTTACTTATTTACTTGAGTTTGTGTTCGTTTTTTTAGGTCAAACTCATAAACAGATTTCTTGTTAGGTTTTTTTTCTTTAGATATTTTACCTACGCCATTTTTCTATTGAATCATAAACTACTCATATTTTATTCCTTTAAAACACTGCTAACTGATTTTGATTATTTTTCCTATTGTAAATGTATTCAACTGTGTTTGTATTGTAATAATTTTGATTGAAGAAATGAAGACAAATTGTTTGTTAGTCTCATTTGTTTTCTAATGTGTTCAAATGATTTCGAGTAAATACAATTATTCTCGAACAATTTCACTATCAATTGGTCTAATGAGTTCTAGAACAACATATGCATATCTACCAATACCCCTAACAAAATCTGATCCACATCGATCAACGGTGTTTAAAAGGAACAAAATTATGGGTGATTCAATAATTTAATAGGAAAATAGCCTAGTTAAAGTATTTGAGAAAAAACCCAACAAGTTTATAAATTTGTTTATATACTTGGCCTTTTTTTTAATGTACGAACGAATTTAAAATTTAAATTTTATAAATTCTGAATTTTATGAGCCCCGACTTTACTTGAATGTCATTTAGTGGAACAATAGCGTTAAAATTTTAAAAAATCCTATATCTGACAA</gDNA_template>
            <first_frame> T  E  T  D  Y  V  L  K  T  E  I  P  G  E  *  R  D  L  L  I  Y  L  S  L  C  S  F  F  *  V  K  L  I  N  R  F  L  V  R  F  F  F  F  R  Y  F  T  Y  A  I  F  L  L  N  H  K  L  L  I  F  Y  S  F  K  T  L  L  T  D  F  D  Y  F  S  Y  C  K  C  I  Q  L  C  L  Y  C  N  N  F  D  *  R  N  E  D  K  L  F  V  S  L  I  C  F  L  M  C  S  N  D  F  E  *  I  Q  L  F  S  N  N  F  T  I  N  W  S  N  E  F  *  N  N  I  C  I  S  T  N  T  P  N  K  I  *  S  T  S  I  N  G  V  *  K  E  Q  N  Y  G  *  F  N  N  L  I  G  K  *  P  S  *  S  I  *  E  K  T  Q  Q  V  Y  K  F  V  Y  I  L  G  L  F  F  N  V  R  T  N  L  K  F  K  F  Y  K  F  *  I  L  *  A  P  T  L  L  E  C  H  L  V  E  Q  *  R  *  N  F  K  K  S  Y  I  *  Q </first_frame>
            <second_frame>  L  R  Q  I  M  C  *  K  Q  K  F  Q  V  S  K  E  I  Y  L  F  T  *  V  C  V  R  F  F  R  S  N  S  *  T  D  F  L  L  G  F  F  S  L  D  I  L  P  T  P  F  F  Y  *  I  I  N  Y  S  Y  F  I  P  L  K  H  C  *  L  I  L  I  I  F  P  I  V  N  V  F  N  C  V  C  I  V  I  I  L  I  E  E  M  K  T  N  C  L  L  V  S  F  V  F  *  C  V  Q  M  I  S  S  K  Y  N  Y  S  R  T  I  S  L  S  I  G  L  M  S  S  R  T  T  Y  A  Y  L  P  I  P  L  T  K  S  D  P  H  R  S  T  V  F  K  R  N  K  I  M  G  D  S  I  I  *  *  E  N  S  L  V  K  V  F  E  K  K  P  N  K  F  I  N  L  F  I  Y  L  A  F  F  L  M  Y  E  R  I  *  N  L  N  F  I  N  S  E  F  Y  E  P  R  L  Y  L  N  V  I  *  W  N  N  S  V  K  I  L  K  N  P  I  S  D   </second_frame>
            <third_frame>   *  D  R  L  C  V  E  N  R  N  S  R  *  V  K  R  F  T  Y  L  L  E  F  V  F  V  F  L  G  Q  T  H  K  Q  I  S  C  *  V  F  F  L  *  I  F  Y  L  R  H  F  S  I  E  S  *  T  T  H  I  L  F  L  *  N  T  A  N  *  F  *  L  F  F  L  L  *  M  Y  S  T  V  F  V  L  *  *  F  *  L  K  K  *  R  Q  I  V  C  *  S  H  L  F  S  N  V  F  K  *  F  R  V  N  T  I  I  L  E  Q  F  H  Y  Q  L  V  *  *  V  L  E  Q  H  M  H  I  Y  Q  Y  P  *  Q  N  L  I  H  I  D  Q  R  C  L  K  G  T  K  L  W  V  I  Q  *  F  N  R  K  I  A  *  L  K  Y  L  R  K  N  P  T  S  L  *  I  C  L  Y  T  W  P  F  F  *  C  T  N  E  F  K  I  *  I  L  *  I  L  N  F  M  S  P  D  F  T  *  M  S  F  S  G  T  I  A  L  K  F  *  K  I  L  Y  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0130B18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="20732" PGL_stop="21854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20732" e_stop="21074"/>
            <exon e_start="21390" e_stop="21644"/>
            <exon e_start="21733" e_stop="21854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.958" e_score="0.996"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20732" e_stop="21074" e_length="343"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21075" i_stop="21389" i_length="315"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="21390" e_stop="21644" e_length="255"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.958">
            <gDNA_intron_boundary i_start="21645" i_stop="21732" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="21733" e_stop="21854" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20732" stop="21074"/>
              <exon start="21390" stop="21644"/>
              <exon start="21733" stop="21854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314192" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAATCAAAACCAAATTACCAATTAGGGTTGCAGAGTGTGTGTGAGAGAGAAGACAGTAGAAGATAATTAATCTTTTTTTTTTGTTCTCAAATTCATCAGTGTGGGTTTCTCAGTTTACTGCAATTCAAAGCAACGGTAGTGAAGTATTTGGGGGATATAGCTTCGATTACAATCCACGGACCCACTACTTCAAAGTTCAAAAATCCCCAAATCAAATCGTTGATTTTAACTTCTTTGTCTTTTCTCTCTCTTCTTTATCATTTCATAATTACGAATCTTTTTTCAGAATGGCTCCTCCCAGGAACCAGAACAGAGCGCCTCTTCCTTCAAGTCCTTCCAAT : AGTAAGTATGCGACAGATGACATAACAGTAGAGAAGAAGAGGAAAATTGCGAATCCGAGAATGCCGACTGCAGCTACTGGTGGTAGACCAATTAGGCAAGCATTTGCAGTGGTGAATGCGGCTCCAGATCTGGCTCCAGCCAGTGGACCACCGAGTACTGCTGGTTCAGATGGCCCTGTCTTTGAGTTTACAAAAGAGGATGTTGAAGCTTTACTCGGGGAGAAATTGAAAACTAAGAACAAGTTTAACACTAAG : GAAAAATGTGATCTCATGTCAGAATACATAAGAAGACTTAAGCTTTGCATTAAGTGGTTCCAGCAGCTTGAAGAAAACAATGTCACACAACAGGCATCACTTAAAAGCTTGTTAGAGTCAGC</gDNA_template>
            <first_frame> T  N  Q  N  Q  I  T  N  *  G  C  R  V  C  V  R  E  K  T  V  E  D  N  *  S  F  F  F  V  L  K  F  I  S  V  G  F  S  V  Y  C  N  S  K  Q  R  *  *  S  I  W  G  I  *  L  R  L  Q  S  T  D  P  L  L  Q  S  S  K  I  P  K  S  N  R  *  F  *  L  L  C  L  F  S  L  F  F  I  I  S  *  L  R  I  F  F  Q  N  G  S  S  Q  E  P  E  Q  S  A  S  S  F  K  S  F  Q   : *  *  V  C  D  R  *  H  N  S  R  E  E  E  E  N  C  E  S  E  N  A  D  C  S  Y  W  W  *  T  N  *  A  S  I  C  S  G  E  C  G  S  R  S  G  S  S  Q  W  T  T  E  Y  C  W  F  R  W  P  C  L  *  V  Y  K  R  G  C  *  S  F  T  R  G  E  I  E  N  *  E  Q  V  *  H  *   : G  K  M  *  S  H  V  R  I  H  K  K  T  *  A  L  H  *  V  V  P  A  A  *  R  K  Q  C  H  T  T  G  I  T  *  K  L  V  R  V  S </first_frame>
            <second_frame>  Q  I  K  T  K  L  P  I  R  V  A  E  C  V  *  E  R  R  Q  *  K  I  I  N  L  F  F  L  F  S  N  S  S  V  W  V  S  Q  F  T  A  I  Q  S  N  G  S  E  V  F  G  G  Y  S  F  D  Y  N  P  R  T  H  Y  F  K  V  Q  K  S  P  N  Q  I  V  D  F  N  F  F  V  F  S  L  S  S  L  S  F  H  N  Y  E  S  F  F  R  M  A  P  P  R  N  Q  N  R  A  P  L  P  S  S  P  S  N  :  S  K  Y  A  T  D  D  I  T  V  E  K  K  R  K  I  A  N  P  R  M  P  T  A  A  T  G  G  R  P  I  R  Q  A  F  A  V  V  N  A  A  P  D  L  A  P  A  S  G  P  P  S  T  A  G  S  D  G  P  V  F  E  F  T  K  E  D  V  E  A  L  L  G  E  K  L  K  T  K  N  K  F  N  T  K  :  E  K  C  D  L  M  S  E  Y  I  R  R  L  K  L  C  I  K  W  F  Q  Q  L  E  E  N  N  V  T  Q  Q  A  S  L  K  S  L  L  E  S   </second_frame>
            <third_frame>   K  S  K  P  N  Y  Q  L  G  L  Q  S  V  C  E  R  E  D  S  R  R  *  L  I  F  F  F  C  S  Q  I  H  Q  C  G  F  L  S  L  L  Q  F  K  A  T  V  V  K  Y  L  G  D  I  A  S  I  T  I  H  G  P  T  T  S  K  F  K  N  P  Q  I  K  S  L  I  L  T  S  L  S  F  L  S  L  L  Y  H  F  I  I  T  N  L  F  S  E  W  L  L  P  G  T  R  T  E  R  L  F  L  Q  V  L  P  I :   V  S  M  R  Q  M  T  *  Q  *  R  R  R  G  K  L  R  I  R  E  C  R  L  Q  L  L  V  V  D  Q  L  G  K  H  L  Q  W  *  M  R  L  Q  I  W  L  Q  P  V  D  H  R  V  L  L  V  Q  M  A  L  S  L  S  L  Q  K  R  M  L  K  L  Y  S  G  R  N  *  K  L  R  T  S  L  T  L  R :   K  N  V  I  S  C  Q  N  T  *  E  D  L  S  F  A  L  S  G  S  S  S  L  K  K  T  M  S  H  N  R  H  H  L  K  A  C  *  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0130B18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20793" stop="21074"/>
                    <exon start="21390" stop="21644"/>
                    <exon start="21733" stop="21852"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIINLFFLFSNSSVWVSQFTAIQSNGSEVFGGYSFDYNPRTHYFKVQKSPNQIVDFNFFVFSLSSLSFHNYESFFRMAPPRNQNRAPLPSSPSNSKYATDDITVEKKRKIANPRMPTAATGGRPIRQAFAVVNAAPDLAPASGPPSTAGSDGPVFEFTKEDVEALLGEKLKTKNKFNTKEKCDLMSEYIRRLKLCIKWFQQLEENNVTQQASLKSLLES</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="23133" PGL_stop="24621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23133" e_stop="23235"/>
            <exon e_start="23322" e_stop="23396"/>
            <exon e_start="23500" e_stop="23646"/>
            <exon e_start="23721" e_stop="23859"/>
            <exon e_start="23967" e_stop="24076"/>
            <exon e_start="24492" e_stop="24621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.342" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.760" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23133" e_stop="23235" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.967">
            <gDNA_intron_boundary i_start="23236" i_stop="23321" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23322" e_stop="23396" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.342" acc_prob="0.996">
            <gDNA_intron_boundary i_start="23397" i_stop="23499" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23500" e_stop="23646" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.939">
            <gDNA_intron_boundary i_start="23647" i_stop="23720" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23721" e_stop="23859" e_length="139"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.760">
            <gDNA_intron_boundary i_start="23860" i_stop="23966" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23967" e_stop="24076" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.865" acc_prob="0.979">
            <gDNA_intron_boundary i_start="24077" i_stop="24491" i_length="415"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24492" e_stop="24621" e_length="130"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23133" stop="23235"/>
              <exon start="23322" stop="23396"/>
              <exon start="23500" stop="23646"/>
              <exon start="23721" stop="23859"/>
              <exon start="23967" stop="24076"/>
              <exon start="24492" stop="24621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317276" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAGTCCAGGCTCTAAGTGCTGAATTACTTAAATATAAGGAATGTAATGGGAAATCTGTTGCTGAGTTAGAGAACATGACAGTAAGGGCAAACGAGCTGGAG : GCAAGTTGTCTGTCTCAATCTGAACAAATTAACAGATTGCAAGAAAAACTTACTTTTGCGGAGAAGAGATTAGAG : ATGTCCGACATGTCAGCACTCGAAACCAGATCAGAATATGAGGAGCAAAAGAAAGTAATTTTTGATTTGCGTCAGCGTCTTGTTGATGCAGAAACAAAAGTTGTGGAAGGAGAGAAACTTCGGAAAAAATTGCACAACACTATACTG : GAATTGAAAGGCAACATACGGGTTTTCTGTAGAGTGAGACCTTTATTATCTGAAGATGGTGTTGGTGCAGAAGCAAATGTCGTCTCTTTTCCATCTTCAATGGAAGCACAAGGGAGAGGCATTGACTTGGCACAAAATG : GACAAAAGCATTCCTTCACGTTTGACAAAGTTTTCACGCCCGAGGCTTCACAAGAAGATGTTTTTGTTGAGATATCCCAGCTTGTACAGAGTGCTCTTGATGGTTATAAG : GTTTGCATATTTGCTTATGGACAAACTGGTTCTGGCAAGACACATACAATGATGGGCAACCCAGAAAGTGCAGAGAATAAAGGACTAATACCCCGCACTTTAGAACAGGTATTTGAGACCCGGCAGTCTC</gDNA_template>
            <first_frame> S  S  P  G  S  K  C  *  I  T  *  I  *  G  M  *  W  E  I  C  C  *  V  R  E  H  D  S  K  G  K  R  A  G   : G  K  L  S  V  S  I  *  T  N  *  Q  I  A  R  K  T  Y  F  C  G  E  E  I  R   : D  V  R  H  V  S  T  R  N  Q  I  R  I  *  G  A  K  E  S  N  F  *  F  A  S  A  S  C  *  C  R  N  K  S  C  G  R  R  E  T  S  E  K  I  A  Q  H  Y  T   : G  I  E  R  Q  H  T  G  F  L  *  S  E  T  F  I  I  *  R  W  C  W  C  R  S  K  C  R  L  F  S  I  F  N  G  S  T  R  E  R  H  *  L  G  T  K  W :   T  K  A  F  L  H  V  *  Q  S  F  H  A  R  G  F  T  R  R  C  F  C  *  D  I  P  A  C  T  E  C  S  *  W  L  *   : G  L  H  I  C  L  W  T  N  W  F  W  Q  D  T  Y  N  D  G  Q  P  R  K  C  R  E  *  R  T  N  T  P  H  F  R  T  G  I  *  D  P  A  V   </first_frame>
            <second_frame>  Q  V  Q  A  L  S  A  E  L  L  K  Y  K  E  C  N  G  K  S  V  A  E  L  E  N  M  T  V  R  A  N  E  L  E  :  A  S  C  L  S  Q  S  E  Q  I  N  R  L  Q  E  K  L  T  F  A  E  K  R  L  E  :  M  S  D  M  S  A  L  E  T  R  S  E  Y  E  E  Q  K  K  V  I  F  D  L  R  Q  R  L  V  D  A  E  T  K  V  V  E  G  E  K  L  R  K  K  L  H  N  T  I  L  :  E  L  K  G  N  I  R  V  F  C  R  V  R  P  L  L  S  E  D  G  V  G  A  E  A  N  V  V  S  F  P  S  S  M  E  A  Q  G  R  G  I  D  L  A  Q  N   : G  Q  K  H  S  F  T  F  D  K  V  F  T  P  E  A  S  Q  E  D  V  F  V  E  I  S  Q  L  V  Q  S  A  L  D  G  Y  K  :  V  C  I  F  A  Y  G  Q  T  G  S  G  K  T  H  T  M  M  G  N  P  E  S  A  E  N  K  G  L  I  P  R  T  L  E  Q  V  F  E  T  R  Q  S  </second_frame>
            <third_frame>   K  S  R  L  *  V  L  N  Y  L  N  I  R  N  V  M  G  N  L  L  L  S  *  R  T  *  Q  *  G  Q  T  S  W  R :   Q  V  V  C  L  N  L  N  K  L  T  D  C  K  K  N  L  L  L  R  R  R  D  *  R :   C  P  T  C  Q  H  S  K  P  D  Q  N  M  R  S  K  R  K  *  F  L  I  C  V  S  V  L  L  M  Q  K  Q  K  L  W  K  E  R  N  F  G  K  N  C  T  T  L  Y  W :   N  *  K  A  T  Y  G  F  S  V  E  *  D  L  Y  Y  L  K  M  V  L  V  Q  K  Q  M  S  S  L  F  H  L  Q  W  K  H  K  G  E  A  L  T  W  H  K  M  :  D  K  S  I  P  S  R  L  T  K  F  S  R  P  R  L  H  K  K  M  F  L  L  R  Y  P  S  L  Y  R  V  L  L  M  V  I  R :   F  A  Y  L  L  M  D  K  L  V  L  A  R  H  I  Q  *  W  A  T  Q  K  V  Q  R  I  K  D  *  Y  P  A  L  *  N  R  Y  L  R  P  G  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0130B18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23134" stop="23235"/>
                    <exon start="23322" stop="23396"/>
                    <exon start="23500" stop="23646"/>
                    <exon start="23721" stop="23859"/>
                    <exon start="23967" stop="24076"/>
                    <exon start="24492" stop="24620"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVQALSAELLKYKECNGKSVAELENMTVRANELEASCLSQSEQINRLQEKLTFAEKRLEMSDMSALETRSEYEEQKKVIFDLRQRLVDAETKVVEGEKLRKKLHNTILELKGNIRVFCRVRPLLSEDGVGAEANVVSFPSSMEAQGRGIDLAQNGQKHSFTFDKVFTPEASQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTHTMMGNPESAENKGLIPRTLEQVFETRQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="28663" PGL_stop="32300"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28663" e_stop="28967"/>
            <exon e_start="30610" e_stop="30672"/>
            <exon e_start="31261" e_stop="31338"/>
            <exon e_start="31415" e_stop="31577"/>
            <exon e_start="31759" e_stop="32300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.872" acc_prob="0.995" e_score="0.970"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="28663" e_stop="28967" e_length="305"/>
          </exon>
          <intron i_serial="1" don_prob="0.872" acc_prob="0.995">
            <gDNA_intron_boundary i_start="28968" i_stop="30609" i_length="1642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30610" e_stop="30672" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30673" i_stop="31260" i_length="588"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31261" e_stop="31338" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.936">
            <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31415" e_stop="31577" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="31759" e_stop="32300" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28663" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28734" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28736" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28738" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28742" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28744" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28746" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="32030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28747" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="32209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28747" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="32022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28748" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28748" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28748" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28748" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28749" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28750" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="32138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28750" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28750" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28750" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28751" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="32075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28754" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="32063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28754" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="32005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28755" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="32138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28757" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28764" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28765" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28769" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28770" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28770" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28773" stop="28967"/>
              <exon start="30610" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30626" stop="30672"/>
              <exon start="31261" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31268" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31316" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="32282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31331" stop="31338"/>
              <exon start="31415" stop="31562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31816" stop="32286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31872" stop="32300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTAGTTTTTTTTAATTTTAATTTATAAAAAAAATGCCAATATGAAAGAAAAAATTATGAATTTTACCCAAATACATTTTCCGATTCAAACAGCAATTGGAAACCCTCATTGGAGAATTTACCGGGAGAATTATTTTTTTCATCTTCTGGCCGGCGACTGATCGGAGATGGTTTCACCGGAGAGTACCAATTGGCTTTATGATTACGGATTCGAAGATAGTTGCGTCCCTGATTCGAATTTCTCAGCTTCTGCATCTGGGTTTAACTGGTCTGTGCAGAATTTGAATGGTTCAAGGAATGTTAG : TTCTGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACG : GGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA : GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG : GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATGATAGATAAGTTGTGACTTTGAAACTGGCAACGGTTTAATGTTTGCTTTGTGTAAAATTAAATAAATTTAACTATAAACTGTATCTACATTTTCTCGGTTCCATTAGCTAAATACTACCCAACTTATAAGAATTAATAAGAATTGCTTCCTTCGTTTCGTTTC</gDNA_template>
            <first_frame> H  *  F  F  L  I  L  I  Y  K  K  N  A  N  M  K  E  K  I  M  N  F  T  Q  I  H  F  P  I  Q  T  A  I  G  N  P  H  W  R  I  Y  R  E  N  Y  F  F  H  L  L  A  G  D  *  S  E  M  V  S  P  E  S  T  N  W  L  Y  D  Y  G  F  E  D  S  C  V  P  D  S  N  F  S  A  S  A  S  G  F  N  W  S  V  Q  N  L  N  G  S  R  N  V  S :   S  E  I  D  G  S  I  G  E  S  D  Y  P  K  E  S  G  S  K  K  R :   A  R  V  E  S  C  A  P  T  S  S  K  A  C  R  E  K  L  R  R  D  R  L  N  D  K :   F  M  E  L  G  A  L  L  E  P  G  R  P  P  K  T  D  K  S  A  I  L  V  D  A  V  R  L  V  T  Q  L  R  D  E  A  Q  K  L  K  D  S  N  L  N  L  Q  E  K  I  K  E  L  K  :  V  E  K  T  E  L  R  D  E  K  H  R  L  K  A  E  K  E  K  L  E  Q  Q  L  K  T  T  S  A  Q  P  S  Y  L  P  P  A  I  P  S  A  F  A  A  H  G  Q  F  P  G  S  K  L  V  P  I  M  S  Y  P  G  V  A  M  W  Q  F  M  P  P  A  A  V  D  T  S  Q  D  H  V  L  R  P  P  V  A  *  L  V  A  A  *  C  L  Q  R  L  P  S  L  Y  L  K  L  I  V  *  S  M  S  S  G  C  I  S  F  G  S  T  P  L  T  A  F  G  *  *  *  I  S  C  D  F  E  T  G  N  G  L  M  F  A  L  C  K  I  K  *  I  *  L  *  T  V  S  T  F  S  R  F  H  *  L  N  T  T  Q  L  I  R  I  N  K  N  C  F  L  R  F  V   </first_frame>
            <second_frame>  I  S  F  F  *  F  *  F  I  K  K  M  P  I  *  K  K  K  L  *  I  L  P  K  Y  I  F  R  F  K  Q  Q  L  E  T  L  I  G  E  F  T  G  R  I  I  F  F  I  F  W  P  A  T  D  R  R  W  F  H  R  R  V  P  I  G  F  M  I  T  D  S  K  I  V  A  S  L  I  R  I  S  Q  L  L  H  L  G  L  T  G  L  C  R  I  *  M  V  Q  G  M  L   : V  L  K  S  M  G  Q  L  V  N  Q  I  T  P  R  K  V  V  L  R  N   : G  Q  G  L  N  H  V  L  Q  Q  V  P  K  L  A  E  R  N  C  E  E  I  G  *  M  T   : S  S  W  N  W  V  H  S  L  S  L  E  D  P  L  K  Q  T  N  P  L  F  L  L  M  L  F  A  W  *  P  S  Y  V  M  K  L  K  S  *  K  T  Q  T  *  I  C  K  K  R  S  R  S  *  R :   L  R  K  P  S  F  E  M  K  N  T  G  *  K  L  K  R  R  S  *  S  N  N  *  R  L  Q  V  H  S  L  V  T  C  L  L  L  Y  L  L  H  L  L  L  M  V  N  F  Q  E  A  S  W  C  Q  S  *  V  T  L  V  S  R  C  G  N  S  C  L  L  L  L  L  I  L  H  R  T  T  S  S  V  L  Q  L  L  N  L  S  Q  L  N  A  Y  K  G  C  L  H  C  T  L  N  *  S  S  S  Q  C  P  P  V  V  L  V  L  A  Q  L  P  L  L  H  L  A  D  D  R  *  V  V  T  L  K  L  A  T  V  *  C  L  L  C  V  K  L  N  K  F  N  Y  K  L  Y  L  H  F  L  G  S  I  S  *  I  L  P  N  L  *  E  L  I  R  I  A  S  F  V  S  F  </second_frame>
            <third_frame>   L  V  F  F  N  F  N  L  *  K  K  C  Q  Y  E  R  K  N  Y  E  F  Y  P  N  T  F  S  D  S  N  S  N  W  K  P  S  L  E  N  L  P  G  E  L  F  F  S  S  S  G  R  R  L  I  G  D  G  F  T  G  E  Y  Q  L  A  L  *  L  R  I  R  R  *  L  R  P  *  F  E  F  L  S  F  C  I  W  V  *  L  V  C  A  E  F  E  W  F  K  E  C  *  :  F  *  N  R  W  V  N  W  *  I  R  L  P  Q  G  K  W  F  *  E  T  :  G  K  G  *  I  M  C  S  N  K  F  Q  S  L  Q  R  E  T  A  K  R  *  A  E  *  Q  :  V  H  G  I  G  C  T  P  *  A  W  K  T  P  *  N  R  Q  I  R  Y  S  C  *  C  C  S  L  G  D  P  V  T  *  *  S  S  K  V  E  R  L  K  L  E  S  A  R  K  D  Q  G  V  K   : G  *  E  N  R  A  S  R  *  K  T  Q  A  E  S  *  K  G  E  A  R  A  T  T  K  D  Y  K  C  T  A  *  L  L  A  S  C  Y  T  F  C  I  C  C  S  W  S  I  S  R  K  Q  A  G  A  N  H  E  L  P  W  C  R  D  V  A  I  H  A  S  C  C  C  *  Y  F  T  G  P  R  P  P  S  S  S  C  L  T  C  R  S  L  M  P  T  K  V  A  F  T  V  P  *  I  N  R  L  V  N  V  L  R  L  Y  *  F  W  L  N  S  P  Y  C  I  W  L  M  I  D  K  L  *  L  *  N  W  Q  R  F  N  V  C  F  V  *  N  *  I  N  L  T  I  N  C  I  Y  I  F  S  V  P  L  A  K  Y  Y  P  T  Y  K  N  *  *  E  L  L  P  S  F  R  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0130B18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28825" stop="28967"/>
                    <exon start="30610" stop="30672"/>
                    <exon start="31261" stop="31338"/>
                    <exon start="31415" stop="31577"/>
                    <exon start="31759" stop="32019"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEMVSPESTNWLYDYGFEDSCVPDSNFSASASGFNWSVQNLNGSRNVSSEIDGSIGESDYPKESGSKKRARVESCAPTSSKACREKLRRDRLNDKFMELGALLEPGRPPKTDKSAILVDAVRLVTQLRDEAQKLKDSNLNLQEKIKELKVEKTELRDEKHRLKAEKEKLEQQLKTTSAQPSYLPPAIPSAFAAHGQFPGSKLVPIMSYPGVAMWQFMPPAAVDTSQDHVLRPPVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31256" e_stop="31338"/>
            <exon e_start="31415" e_stop="31577"/>
            <exon e_start="31759" e_stop="32300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31256" e_stop="31338" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.936">
            <gDNA_intron_boundary i_start="31339" i_stop="31414" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31415" e_stop="31577" e_length="163"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="31578" i_stop="31758" i_length="181"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="31759" e_stop="32300" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31256" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31268" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="31985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31316" stop="31338"/>
              <exon start="31415" stop="31577"/>
              <exon start="31759" stop="32282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31331" stop="31338"/>
              <exon start="31415" stop="31562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31816" stop="32286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31872" stop="32300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACAGGGCAAGGGTTGAATCATGTGCTCCAACAAGTTCCAAAGCTTGCAGAGAGAAACTGCGAAGAGATAGGCTGAATGACAA : GTTCATGGAATTGGGTGCACTCCTTGAGCCTGGAAGACCCCCTAAAACAGACAAATCCGCTATTCTTGTTGATGCTGTTCGCTTGGTGACCCAGTTACGTGATGAAGCTCAAAAGTTGAAAGACTCAAACTTGAATCTGCAAGAAAAGATCAAGGAGTTAAAG : GTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATGATAGATAAGTTGTGACTTTGAAACTGGCAACGGTTTAATGTTTGCTTTGTGTAAAATTAAATAAATTTAACTATAAACTGTATCTACATTTTCTCGGTTCCATTAGCTAAATACTACCCAACTTATAAGAATTAATAAGAATTGCTTCCTTCGTTTCGTTTC</gDNA_template>
            <first_frame> Y  R  A  R  V  E  S  C  A  P  T  S  S  K  A  C  R  E  K  L  R  R  D  R  L  N  D  K :   F  M  E  L  G  A  L  L  E  P  G  R  P  P  K  T  D  K  S  A  I  L  V  D  A  V  R  L  V  T  Q  L  R  D  E  A  Q  K  L  K  D  S  N  L  N  L  Q  E  K  I  K  E  L  K  :  V  E  K  T  E  L  R  D  E  K  H  R  L  K  A  E  K  E  K  L  E  Q  Q  L  K  T  T  S  A  Q  P  S  Y  L  P  P  A  I  P  S  A  F  A  A  H  G  Q  F  P  G  S  K  L  V  P  I  M  S  Y  P  G  V  A  M  W  Q  F  M  P  P  A  A  V  D  T  S  Q  D  H  V  L  R  P  P  V  A  *  L  V  A  A  *  C  L  Q  R  L  P  S  L  Y  L  K  L  I  V  *  S  M  S  S  G  C  I  S  F  G  S  T  P  L  T  A  F  G  *  *  *  I  S  C  D  F  E  T  G  N  G  L  M  F  A  L  C  K  I  K  *  I  *  L  *  T  V  S  T  F  S  R  F  H  *  L  N  T  T  Q  L  I  R  I  N  K  N  C  F  L  R  F  V   </first_frame>
            <second_frame>  T  G  Q  G  L  N  H  V  L  Q  Q  V  P  K  L  A  E  R  N  C  E  E  I  G  *  M  T   : S  S  W  N  W  V  H  S  L  S  L  E  D  P  L  K  Q  T  N  P  L  F  L  L  M  L  F  A  W  *  P  S  Y  V  M  K  L  K  S  *  K  T  Q  T  *  I  C  K  K  R  S  R  S  *  R :   L  R  K  P  S  F  E  M  K  N  T  G  *  K  L  K  R  R  S  *  S  N  N  *  R  L  Q  V  H  S  L  V  T  C  L  L  L  Y  L  L  H  L  L  L  M  V  N  F  Q  E  A  S  W  C  Q  S  *  V  T  L  V  S  R  C  G  N  S  C  L  L  L  L  L  I  L  H  R  T  T  S  S  V  L  Q  L  L  N  L  S  Q  L  N  A  Y  K  G  C  L  H  C  T  L  N  *  S  S  S  Q  C  P  P  V  V  L  V  L  A  Q  L  P  L  L  H  L  A  D  D  R  *  V  V  T  L  K  L  A  T  V  *  C  L  L  C  V  K  L  N  K  F  N  Y  K  L  Y  L  H  F  L  G  S  I  S  *  I  L  P  N  L  *  E  L  I  R  I  A  S  F  V  S  F  </second_frame>
            <third_frame>   Q  G  K  G  *  I  M  C  S  N  K  F  Q  S  L  Q  R  E  T  A  K  R  *  A  E  *  Q  :  V  H  G  I  G  C  T  P  *  A  W  K  T  P  *  N  R  Q  I  R  Y  S  C  *  C  C  S  L  G  D  P  V  T  *  *  S  S  K  V  E  R  L  K  L  E  S  A  R  K  D  Q  G  V  K   : G  *  E  N  R  A  S  R  *  K  T  Q  A  E  S  *  K  G  E  A  R  A  T  T  K  D  Y  K  C  T  A  *  L  L  A  S  C  Y  T  F  C  I  C  C  S  W  S  I  S  R  K  Q  A  G  A  N  H  E  L  P  W  C  R  D  V  A  I  H  A  S  C  C  C  *  Y  F  T  G  P  R  P  P  S  S  S  C  L  T  C  R  S  L  M  P  T  K  V  A  F  T  V  P  *  I  N  R  L  V  N  V  L  R  L  Y  *  F  W  L  N  S  P  Y  C  I  W  L  M  I  D  K  L  *  L  *  N  W  Q  R  F  N  V  C  F  V  *  N  *  I  N  L  T  I  N  C  I  Y  I  F  S  V  P  L  A  K  Y  Y  P  T  Y  K  N  *  *  E  L  L  P  S  F  R  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0130B18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31256" stop="31338"/>
                    <exon start="31415" stop="31577"/>
                    <exon start="31759" stop="32019"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRARVESCAPTSSKACREKLRRDRLNDKFMELGALLEPGRPPKTDKSAILVDAVRLVTQLRDEAQKLKDSNLNLQEKIKELKVEKTELRDEKHRLKAEKEKLEQQLKTTSAQPSYLPPAIPSAFAAHGQFPGSKLVPIMSYPGVAMWQFMPPAAVDTSQDHVLRPPVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="31716" e_stop="32300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="31716" e_stop="32300" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31716" stop="32228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31721" stop="32227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31816" stop="32286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31872" stop="32300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCTTCTGCTCCTGAACTTCAAGCATGTGTTAACTTGTGTAGGTTGAGAAAACCGAGCTTCGAGATGAAAAACACAGGCTGAAAGCTGAAAAGGAGAAGCTAGAGCAACAACTAAAGACTACAAGTGCACAGCCTAGTTACTTGCCTCCTGCTATACCTTCTGCATTTGCTGCTCATGGTCAATTTCCAGGAAGCAAGCTGGTGCCAATCATGAGTTACCCTGGTGTCGCGATGTGGCAATTCATGCCTCCTGCTGCTGTTGATACTTCACAGGACCACGTCCTCCGTCCTCCAGTTGCTTAACTTGTCGCAGCTTAATGCCTACAAAGGTTGCCTTCACTGTACCTTAAATTAATCGTCTAGTCAATGTCCTCCGGTTGTATTAGTTTTGGCTCAACTCCCCTTACTGCATTTGGCTGATGATAGATAAGTTGTGACTTTGAAACTGGCAACGGTTTAATGTTTGCTTTGTGTAAAATTAAATAAATTTAACTATAAACTGTATCTACATTTTCTCGGTTCCATTAGCTAAATACTACCCAACTTATAAGAATTAATAAGAATTGCTTCCTTCGTTTCGTTTC</gDNA_template>
            <first_frame> T  L  L  L  L  N  F  K  H  V  L  T  C  V  G  *  E  N  R  A  S  R  *  K  T  Q  A  E  S  *  K  G  E  A  R  A  T  T  K  D  Y  K  C  T  A  *  L  L  A  S  C  Y  T  F  C  I  C  C  S  W  S  I  S  R  K  Q  A  G  A  N  H  E  L  P  W  C  R  D  V  A  I  H  A  S  C  C  C  *  Y  F  T  G  P  R  P  P  S  S  S  C  L  T  C  R  S  L  M  P  T  K  V  A  F  T  V  P  *  I  N  R  L  V  N  V  L  R  L  Y  *  F  W  L  N  S  P  Y  C  I  W  L  M  I  D  K  L  *  L  *  N  W  Q  R  F  N  V  C  F  V  *  N  *  I  N  L  T  I  N  C  I  Y  I  F  S  V  P  L  A  K  Y  Y  P  T  Y  K  N  *  *  E  L  L  P  S  F  R  F </first_frame>
            <second_frame>  L  F  C  S  *  T  S  S  M  C  *  L  V  *  V  E  K  T  E  L  R  D  E  K  H  R  L  K  A  E  K  E  K  L  E  Q  Q  L  K  T  T  S  A  Q  P  S  Y  L  P  P  A  I  P  S  A  F  A  A  H  G  Q  F  P  G  S  K  L  V  P  I  M  S  Y  P  G  V  A  M  W  Q  F  M  P  P  A  A  V  D  T  S  Q  D  H  V  L  R  P  P  V  A  *  L  V  A  A  *  C  L  Q  R  L  P  S  L  Y  L  K  L  I  V  *  S  M  S  S  G  C  I  S  F  G  S  T  P  L  T  A  F  G  *  *  *  I  S  C  D  F  E  T  G  N  G  L  M  F  A  L  C  K  I  K  *  I  *  L  *  T  V  S  T  F  S  R  F  H  *  L  N  T  T  Q  L  I  R  I  N  K  N  C  F  L  R  F  V   </second_frame>
            <third_frame>   S  S  A  P  E  L  Q  A  C  V  N  L  C  R  L  R  K  P  S  F  E  M  K  N  T  G  *  K  L  K  R  R  S  *  S  N  N  *  R  L  Q  V  H  S  L  V  T  C  L  L  L  Y  L  L  H  L  L  L  M  V  N  F  Q  E  A  S  W  C  Q  S  *  V  T  L  V  S  R  C  G  N  S  C  L  L  L  L  L  I  L  H  R  T  T  S  S  V  L  Q  L  L  N  L  S  Q  L  N  A  Y  K  G  C  L  H  C  T  L  N  *  S  S  S  Q  C  P  P  V  V  L  V  L  A  Q  L  P  L  L  H  L  A  D  D  R  *  V  V  T  L  K  L  A  T  V  *  C  L  L  C  V  K  L  N  K  F  N  Y  K  L  Y  L  H  F  L  G  S  I  S  *  I  L  P  N  L  *  E  L  I  R  I  A  S  F  V  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0130B18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31759" stop="32019"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEKTELRDEKHRLKAEKEKLEQQLKTTSAQPSYLPPAIPSAFAAHGQFPGSKLVPIMSYPGVAMWQFMPPAAVDTSQDHVLRPPVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="30613" e_stop="31136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30613" e_stop="31136" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30613" stop="31136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAATCGATGGGTCAATTGGTGAATCAGATTACCCCAAGGAAAGTGGTTCTAAGAAACGGTAAGAATTTTTGCCTTTTCTGAACATTTGTGCTGATCTCCATCATTGATGTTGAATAAAGATGTGGTGCTGCCCTCAATTGTTAAATGTAGTTTAATTTGATTAGCTTCTGTTTCATATAATTATTATTTAAATCTGTGAGGTGACACATTTCCCACTCTCTTTCTAAGTTTTGAGTTTTTTTAAATCCTTTTTTATTCTGTGATTCATCATCTTGAAAAATCTGTTGTATTCTGCTTCTAACTGGCAAGATTTGAGAATGTAGAATCCATTAAACCGATTTATATGTTCTTGATTTAAAAGCCTGCATAATTCAAGACATATTCTTAAGTCTCTATTCGAAAGAATTCACTATGCCCTGGCATTCTTCAAGTTCATAAACGCTTCAACATTGTGTGATTTAACATGTTTCACGAAGTCCCACTGATATATTCCTAATCCTATAATTACAATGCAAGTTGAAC</gDNA_template>
            <first_frame> *  N  R  W  V  N  W  *  I  R  L  P  Q  G  K  W  F  *  E  T  V  R  I  F  A  F  S  E  H  L  C  *  S  P  S  L  M  L  N  K  D  V  V  L  P  S  I  V  K  C  S  L  I  *  L  A  S  V  S  Y  N  Y  Y  L  N  L  *  G  D  T  F  P  T  L  F  L  S  F  E  F  F  *  I  L  F  Y  S  V  I  H  H  L  E  K  S  V  V  F  C  F  *  L  A  R  F  E  N  V  E  S  I  K  P  I  Y  M  F  L  I  *  K  P  A  *  F  K  T  Y  S  *  V  S  I  R  K  N  S  L  C  P  G  I  L  Q  V  H  K  R  F  N  I  V  *  F  N  M  F  H  E  V  P  L  I  Y  S  *  S  Y  N  Y  N  A  S  *   </first_frame>
            <second_frame>  E  I  D  G  S  I  G  E  S  D  Y  P  K  E  S  G  S  K  K  R  *  E  F  L  P  F  L  N  I  C  A  D  L  H  H  *  C  *  I  K  M  W  C  C  P  Q  L  L  N  V  V  *  F  D  *  L  L  F  H  I  I  I  I  *  I  C  E  V  T  H  F  P  L  S  F  *  V  L  S  F  F  K  S  F  F  I  L  *  F  I  I  L  K  N  L  L  Y  S  A  S  N  W  Q  D  L  R  M  *  N  P  L  N  R  F  I  C  S  *  F  K  S  L  H  N  S  R  H  I  L  K  S  L  F  E  R  I  H  Y  A  L  A  F  F  K  F  I  N  A  S  T  L  C  D  L  T  C  F  T  K  S  H  *  Y  I  P  N  P  I  I  T  M  Q  V  E  </second_frame>
            <third_frame>   K  S  M  G  Q  L  V  N  Q  I  T  P  R  K  V  V  L  R  N  G  K  N  F  C  L  F  *  T  F  V  L  I  S  I  I  D  V  E  *  R  C  G  A  A  L  N  C  *  M  *  F  N  L  I  S  F  C  F  I  *  L  L  F  K  S  V  R  *  H  I  S  H  S  L  S  K  F  *  V  F  L  N  P  F  L  F  C  D  S  S  S  *  K  I  C  C  I  L  L  L  T  G  K  I  *  E  C  R  I  H  *  T  D  L  Y  V  L  D  L  K  A  C  I  I  Q  D  I  F  L  S  L  Y  S  K  E  F  T  M  P  W  H  S  S  S  S  *  T  L  Q  H  C  V  I  *  H  V  S  R  S  P  T  D  I  F  L  I  L  *  L  Q  C  K  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0130B18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="41187" PGL_stop="39434"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41187" e_stop="40905"/>
            <exon e_start="40818" e_stop="40652"/>
            <exon e_start="40159" e_stop="39833"/>
            <exon e_start="39624" e_stop="39434"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.624" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41187" e_stop="40905" e_length="283"/>
          </exon>
          <intron i_serial="1" don_prob="0.624" acc_prob="0.995">
            <gDNA_intron_boundary i_start="40904" i_stop="40819" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40818" e_stop="40652" e_length="167"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.986">
            <gDNA_intron_boundary i_start="40651" i_stop="40160" i_length="492"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40159" e_stop="39833" e_length="327"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="39832" i_stop="39625" i_length="208"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="39624" e_stop="39434" e_length="191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41187" stop="40905"/>
              <exon start="40818" stop="40652"/>
              <exon start="40159" stop="40125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41141" stop="40905"/>
              <exon start="40818" stop="40652"/>
              <exon start="40159" stop="40051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41066" stop="40905"/>
              <exon start="40818" stop="40652"/>
              <exon start="40159" stop="39833"/>
              <exon start="39624" stop="39619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41066" stop="40905"/>
              <exon start="40818" stop="40652"/>
              <exon start="40159" stop="39910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41055" stop="40905"/>
              <exon start="40818" stop="40652"/>
              <exon start="40159" stop="40029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41004" stop="40905"/>
              <exon start="40818" stop="40652"/>
              <exon start="40159" stop="39833"/>
              <exon start="39624" stop="39496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40909" stop="40905"/>
              <exon start="40818" stop="40652"/>
              <exon start="40159" stop="39833"/>
              <exon start="39624" stop="39434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555169" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATACAAGATTAGTCGTAGATGCAATACAGAAGTGGAATATTTGCCAGAAACAGAATCGCAAAGAACGAGGTGGTAATATGGATATATATGGTGAATTTGGAGATTCTGATAACAGTAAAATATTTCCTGAACGAATGAAGGTAGAAAATGGTCTCTATTCCAAGATTAGCAATACAACCACAGAAGAAAAGAGAAGTTCTGATGAAAGACATCATATGTATATATCCGAAGTGGAGCTTGAAATGCATAAACGTCAGATTTCACTGTGGGCAAAACCAGAG : ATCTATTTTCAATCATTTGTTGCAGATGAGGTTAAGATAGGCGATATTTATGCTTTTGGAGGAGAGACTGAGATAGAAGAAGTTCCAACTCATTTAGTCGAGGCGAGATCAAAAGATTTAGTCCCAGTTTTTGATTTCATTCAAGCTTCCAAGACCCAACCAGGGAG : GGTATCTGTTAACAGTGACAATAGCCAACAGTCACTTCCTAGGCTGGAGGTCTCCAATTACTGCAATCTTATGGCTAATGGTGTTGATGAATTGCATCATTCCATGACTGGTCCCAGGAGTAAAGTTCACTGCGGCCGAGAAGTTAATGGGTTGGATGGTCTTCCAATGACAAGTCAAACTGCTAATGGCTTTGTAAATAGTAGTGAGAGCCCTAAAGCGGATGCCGAGCTAGATTTTGTAAATAACATGAAGTTTGTAAATAATAACCTAGATGGCGCAGCATTGGAGGATCATTTCGAAGATGAAGTCGACGGTGTTGATTAAAG : GTGTTCGTTATTCGTTTATTACGCGGAAGGTTTCTGTAAGTGTTGATATTGTGGGGGGTGGAAAATGTAGAGAAGAAAGAGGTTTTAGGCTCCTTGATTGACCCAATGAACAAAATGTGGATGCTTTAACTTTGTATTGTAGATATTTAGATATGAAACTTATCCAATAAATTAGCTGTAATGTGTAAATA</gDNA_template>
            <first_frame> *  Y  K  I  S  R  R  C  N  T  E  V  E  Y  L  P  E  T  E  S  Q  R  T  R  W  *  Y  G  Y  I  W  *  I  W  R  F  *  *  Q  *  N  I  S  *  T  N  E  G  R  K  W  S  L  F  Q  D  *  Q  Y  N  H  R  R  K  E  K  F  *  *  K  T  S  Y  V  Y  I  R  S  G  A  *  N  A  *  T  S  D  F  T  V  G  K  T  R   : D  L  F  S  I  I  C  C  R  *  G  *  D  R  R  Y  L  C  F  W  R  R  D  *  D  R  R  S  S  N  S  F  S  R  G  E  I  K  R  F  S  P  S  F  *  F  H  S  S  F  Q  D  P  T  R  E  :  G  I  C  *  Q  *  Q  *  P  T  V  T  S  *  A  G  G  L  Q  L  L  Q  S  Y  G  *  W  C  *  *  I  A  S  F  H  D  W  S  Q  E  *  S  S  L  R  P  R  S  *  W  V  G  W  S  S  N  D  K  S  N  C  *  W  L  C  K  *  *  *  E  P  *  S  G  C  R  A  R  F  C  K  *  H  E  V  C  K  *  *  P  R  W  R  S  I  G  G  S  F  R  R  *  S  R  R  C  *  L  K  :  V  F  V  I  R  L  L  R  G  R  F  L  *  V  L  I  L  W  G  V  E  N  V  E  K  K  E  V  L  G  S  L  I  D  P  M  N  K  M  W  M  L  *  L  C  I  V  D  I  *  I  *  N  L  S  N  K  L  A  V  M  C  K   </first_frame>
            <second_frame>  D  T  R  L  V  V  D  A  I  Q  K  W  N  I  C  Q  K  Q  N  R  K  E  R  G  G  N  M  D  I  Y  G  E  F  G  D  S  D  N  S  K  I  F  P  E  R  M  K  V  E  N  G  L  Y  S  K  I  S  N  T  T  T  E  E  K  R  S  S  D  E  R  H  H  M  Y  I  S  E  V  E  L  E  M  H  K  R  Q  I  S  L  W  A  K  P  E  :  I  Y  F  Q  S  F  V  A  D  E  V  K  I  G  D  I  Y  A  F  G  G  E  T  E  I  E  E  V  P  T  H  L  V  E  A  R  S  K  D  L  V  P  V  F  D  F  I  Q  A  S  K  T  Q  P  G  R :   V  S  V  N  S  D  N  S  Q  Q  S  L  P  R  L  E  V  S  N  Y  C  N  L  M  A  N  G  V  D  E  L  H  H  S  M  T  G  P  R  S  K  V  H  C  G  R  E  V  N  G  L  D  G  L  P  M  T  S  Q  T  A  N  G  F  V  N  S  S  E  S  P  K  A  D  A  E  L  D  F  V  N  N  M  K  F  V  N  N  N  L  D  G  A  A  L  E  D  H  F  E  D  E  V  D  G  V  D  *  R :   C  S  L  F  V  Y  Y  A  E  G  F  C  K  C  *  Y  C  G  G  W  K  M  *  R  R  K  R  F  *  A  P  *  L  T  Q  *  T  K  C  G  C  F  N  F  V  L  *  I  F  R  Y  E  T  Y  P  I  N  *  L  *  C  V  N  </second_frame>
            <third_frame>   I  Q  D  *  S  *  M  Q  Y  R  S  G  I  F  A  R  N  R  I  A  K  N  E  V  V  I  W  I  Y  M  V  N  L  E  I  L  I  T  V  K  Y  F  L  N  E  *  R  *  K  M  V  S  I  P  R  L  A  I  Q  P  Q  K  K  R  E  V  L  M  K  D  I  I  C  I  Y  P  K  W  S  L  K  C  I  N  V  R  F  H  C  G  Q  N  Q  R :   S  I  F  N  H  L  L  Q  M  R  L  R  *  A  I  F  M  L  L  E  E  R  L  R  *  K  K  F  Q  L  I  *  S  R  R  D  Q  K  I  *  S  Q  F  L  I  S  F  K  L  P  R  P  N  Q  G   : G  Y  L  L  T  V  T  I  A  N  S  H  F  L  G  W  R  S  P  I  T  A  I  L  W  L  M  V  L  M  N  C  I  I  P  *  L  V  P  G  V  K  F  T  A  A  E  K  L  M  G  W  M  V  F  Q  *  Q  V  K  L  L  M  A  L  *  I  V  V  R  A  L  K  R  M  P  S  *  I  L  *  I  T  *  S  L  *  I  I  T  *  M  A  Q  H  W  R  I  I  S  K  M  K  S  T  V  L  I  K   : G  V  R  Y  S  F  I  T  R  K  V  S  V  S  V  D  I  V  G  G  G  K  C  R  E  E  R  G  F  R  L  L  D  *  P  N  E  Q  N  V  D  A  L  T  L  Y  C  R  Y  L  D  M  K  L  I  Q  *  I  S  C  N  V  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0130B18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41186" stop="40905"/>
                    <exon start="40818" stop="40652"/>
                    <exon start="40159" stop="39835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTRLVVDAIQKWNICQKQNRKERGGNMDIYGEFGDSDNSKIFPERMKVENGLYSKISNTTTEEKRSSDERHHMYISEVELEMHKRQISLWAKPEIYFQSFVADEVKIGDIYAFGGETEIEEVPTHLVEARSKDLVPVFDFIQASKTQPGRVSVNSDNSQQSLPRLEVSNYCNLMANGVDELHHSMTGPRSKVHCGREVNGLDGLPMTSQTANGFVNSSESPKADAELDFVNNMKFVNNNLDGAALEDHFEDEVDGVD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="42340" PGL_stop="41304"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42340" e_stop="42256"/>
            <exon e_start="42052" e_stop="41816"/>
            <exon e_start="41723" e_stop="41304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.880" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42340" e_stop="42256" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42255" i_stop="42053" i_length="203"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42052" e_stop="41816" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.880">
            <gDNA_intron_boundary i_start="41815" i_stop="41724" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="41723" e_stop="41304" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42340" stop="42256"/>
              <exon start="42052" stop="41816"/>
              <exon start="41723" stop="41304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42340" stop="42256"/>
              <exon start="42052" stop="41816"/>
              <exon start="41723" stop="41489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATTGTTCTCAGCCTGGGAATGTTTGTGTAAAGTTATCAGGAGCTCCTAATGGTCATTTTCAAGACGTAGACAGTGTTGGAATG : GTCATAGTCAGGGACATTGTCAGCAAAACTCTTATTGCTCAGTTTAGGGCACATAAAAGTCCTATTGCAGCTTTGTGCTTTGACCCTAGCACTACTCTTCTGGTGACTGCTTCAGTTCAAGGTCATAACATCAATGTATTTCGGATAATGCCTGGACTATCTGAAAGTACTTGTGCTACTGATCCTGGATCTTCTTATGTCCATCTGTATAGGCTGCAGCGTGGACTGACTAACGCG : GTCATACAAGACATAAGTTTTAGTAATGATAGCCGGTGGATTATGATAAGTTCTTCCAGAGGAACTAGCCATCTTTTTGCGGTATCTCCTTCAGGTGGATCAGTTGATTTTCACACATCTGATGCACGTCGTAGTGCTTGCCCTAATAGCTCTGGGGTGATAGCAACGCTTGCAGTTCAGAGGGCTGTAATTTCTCAGCAAAGCATTGGTGGATCTGGTTCACCTGTGACACTTTCTGCTGTTGGCCGGATAAGGAGTGGAGGTAATGGTTGGAAAAATACTCTAAGTGGTGCTGCTGCTGCTGCTACTGGAAACGTGAGCTCTCTATCTGGGTCCATTGCTTCAGCTTTTCAATACTACAACAAAAACCATAACCAATATACAGATCCAGCCTTTCTAAAATTAAATTATCACCTGCTG</gDNA_template>
            <first_frame> *  L  F  S  A  W  E  C  L  C  K  V  I  R  S  S  *  W  S  F  S  R  R  R  Q  C  W  N   : G  H  S  Q  G  H  C  Q  Q  N  S  Y  C  S  V  *  G  T  *  K  S  Y  C  S  F  V  L  *  P  *  H  Y  S  S  G  D  C  F  S  S  R  S  *  H  Q  C  I  S  D  N  A  W  T  I  *  K  Y  L  C  Y  *  S  W  I  F  L  C  P  S  V  *  A  A  A  W  T  D  *  R   : G  H  T  R  H  K  F  *  *  *  *  P  V  D  Y  D  K  F  F  Q  R  N  *  P  S  F  C  G  I  S  F  R  W  I  S  *  F  S  H  I  *  C  T  S  *  C  L  P  *  *  L  W  G  D  S  N  A  C  S  S  E  G  C  N  F  S  A  K  H  W  W  I  W  F  T  C  D  T  F  C  C  W  P  D  K  E  W  R  *  W  L  E  K  Y  S  K  W  C  C  C  C  C  Y  W  K  R  E  L  S  I  W  V  H  C  F  S  F  S  I  L  Q  Q  K  P  *  P  I  Y  R  S  S  L  S  K  I  K  L  S  P  A  </first_frame>
            <second_frame>  N  C  S  Q  P  G  N  V  C  V  K  L  S  G  A  P  N  G  H  F  Q  D  V  D  S  V  G  M  :  V  I  V  R  D  I  V  S  K  T  L  I  A  Q  F  R  A  H  K  S  P  I  A  A  L  C  F  D  P  S  T  T  L  L  V  T  A  S  V  Q  G  H  N  I  N  V  F  R  I  M  P  G  L  S  E  S  T  C  A  T  D  P  G  S  S  Y  V  H  L  Y  R  L  Q  R  G  L  T  N  A  :  V  I  Q  D  I  S  F  S  N  D  S  R  W  I  M  I  S  S  S  R  G  T  S  H  L  F  A  V  S  P  S  G  G  S  V  D  F  H  T  S  D  A  R  R  S  A  C  P  N  S  S  G  V  I  A  T  L  A  V  Q  R  A  V  I  S  Q  Q  S  I  G  G  S  G  S  P  V  T  L  S  A  V  G  R  I  R  S  G  G  N  G  W  K  N  T  L  S  G  A  A  A  A  A  T  G  N  V  S  S  L  S  G  S  I  A  S  A  F  Q  Y  Y  N  K  N  H  N  Q  Y  T  D  P  A  F  L  K  L  N  Y  H  L  L </second_frame>
            <third_frame>   I  V  L  S  L  G  M  F  V  *  S  Y  Q  E  L  L  M  V  I  F  K  T  *  T  V  L  E  W :   S  *  S  G  T  L  S  A  K  L  L  L  L  S  L  G  H  I  K  V  L  L  Q  L  C  A  L  T  L  A  L  L  F  W  *  L  L  Q  F  K  V  I  T  S  M  Y  F  G  *  C  L  D  Y  L  K  V  L  V  L  L  I  L  D  L  L  M  S  I  C  I  G  C  S  V  D  *  L  T  R :   S  Y  K  T  *  V  L  V  M  I  A  G  G  L  *  *  V  L  P  E  E  L  A  I  F  L  R  Y  L  L  Q  V  D  Q  L  I  F  T  H  L  M  H  V  V  V  L  A  L  I  A  L  G  *  *  Q  R  L  Q  F  R  G  L  *  F  L  S  K  A  L  V  D  L  V  H  L  *  H  F  L  L  L  A  G  *  G  V  E  V  M  V  G  K  I  L  *  V  V  L  L  L  L  L  L  E  T  *  A  L  Y  L  G  P  L  L  Q  L  F  N  T  T  T  K  T  I  T  N  I  Q  I  Q  P  F  *  N  *  I  I  T  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0130B18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42339" stop="42256"/>
                    <exon start="42052" stop="41816"/>
                    <exon start="41723" stop="41304"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NCSQPGNVCVKLSGAPNGHFQDVDSVGMVIVRDIVSKTLIAQFRAHKSPIAALCFDPSTTLLVTASVQGHNINVFRIMPGLSESTCATDPGSSYVHLYRLQRGLTNAVIQDISFSNDSRWIMISSSRGTSHLFAVSPSGGSVDFHTSDARRSACPNSSGVIATLAVQRAVISQQSIGGSGSPVTLSAVGRIRSGGNGWKNTLSGAAAAATGNVSSLSGSIASAFQYYNKNHNQYTDPAFLKLNYHLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 72 chains have been computed
$ 
$ memory statistics:
$ 113304 bytes spliced alignments in total
$ 51 spliced alignments have been stored
$ 2221 bytes was the average size of a spliced alignment
$ 12760 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2126 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 75 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 17:37:18
-->
