<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 08:40:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332200" ref_strand="+" ref_description="SGN-U332200        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr1:29751865-29753837 REVERSE | Aliases: YUP8H12R.30, YUP8H12R_30(evalue: 1e-35, score=146) genbank/nr: Contains(evalue: 9e-34, score=146)">
      <seq>cacggatttactccagactcttacacctattcttcattgatcagaggattatgcttggaaaagatgttggtggctgctgtcgatgtattctacatgatggaagaaaatggatataggcctgatattgacaatttcaatgcgcttgtgcttggactatgcaaatccaaaagaacagacttgtcattaaaggtatttgaggacatgatcagcaaaggttatatgcctaatgagataacatataccattctagtcgaaggcatcatccatgaagatcacaaggagcttgcatcagtagtcctaagggaactgcaccggaaagaagtaataagtagaaatactgttgaaagacttgctatgcaatatgagcttgaagatatggcagtatgctgatctttcacaaaaccaatggcgtgtggtcacaggatgagaaactaacaaaggttcttcattagcaaatgctaaatacaccaaataaacaaagttattctcatgctgtatgtcagatggtaactttacacaactaataaaccttcgggataattggttttcagatatggtagttgattcatagtaggcttcaaataggtgagtggtgaaacttgtcaattctcactagcttactcttgctactcaattgctgttacaaaaaaagttgtatatcctaaatcctttatctaaagctttctttctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="1" stop="1082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120" g_stop="775" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="691" polyA_stop="708"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-U332200" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120" e_stop="775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATGTTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTATAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCTTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</genome_strand>
        <mrna_strand>CACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATATTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTCTAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCGTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326706" ref_strand="+" ref_description="SGN-U326706        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | SNARE-associated protein-related, contains weak similarity to SNARE-associated protein snapin (Mus musculus) gi:4206090:gb:AAD11418 | chr1:29749584-29750708 REVERSE | Aliases: YUP8H12R.31, YUP8H12R_31(evalue: 3e-29, score=125) genbank/nr: gi|30699390|ref|NP_178028.2| expressed protein [Arabidopsis thaliana] gi|26451487|dbj|BAC42842.1| unknown protein [Arabidopsis thaliana] gi|28973157|gb|AAO63903.1| unknown protein [Arabidopsis thaliana](evalue: 2e-27, score=125)">
      <seq>tgacgagtaccgggaaatacaatgtcgaacgaagccccagcaaaaccaccgtgcgacacaccggagcatgactcagccggcgtcaacggctttgacatcaacaacgacacttcaagtactgccttagcaaagggcctttccactataatatcttctctaatccgggaatttgatgatagtgctgccgccacctctcgtagtcaagatcaactctcttccaccctcgatcgtctcactggagagcttgacaagctgctggaagatgccccattgccttttatcatgcagcatgctgccagaatttctggtgttaggaaaagaattacatcgttgaactcacttttgaagtctatacagaggcgtcttgataatatcgaccacacattatctgctggtttgttacatgagaagtcctcaggggatggtgggcgagaccatgagaatcataagtcttcattgaagagttcatgatcaaaatccaggagaagattcaaatgtccttcgcagtgcccgtagaaatctccttctgattgcaagcatttggaactgattcagccttgtggtgtaaaaggtagtctgatgcatgaggttataacacactgcgttctgaaaagatgttcttttacctgtcaaaaaattgcatggtttcagctctgtgccatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="4780" stop="8591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5080" g_stop="5320" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5321" i_stop="6618" i_length="1298">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6619" g_stop="6783" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="406" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6784" i_stop="7070" i_length="287">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7071" g_stop="7128" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="464" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7129" i_stop="8090" i_length="962">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8091" g_stop="8291" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="665" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-U326706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5080" e_stop="5320"/>
          <exon e_start="6619" e_stop="6783"/>
          <exon e_start="7071" e_stop="7128"/>
          <exon e_start="8091" e_stop="8291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAGGTAGAACTCATCACCTTCTTCTAATTGTATTCAATGGACTTAATTTCGACATTTATTTTTGATGCTCTGTTTAATTGGATTTAGGGATCCATTTACTGTTTTACATTTCATTTTTGTTACCAATTGTTATTGAATAGTTTAAAGTGGGAAGCTTTGACAAGAGGGGCTTGTTCGGATGATAAGCACCCTCCACCTTTAATCCTAGAGTTGTGGGTTCAGTTACCAGTGGAGCAAAACGGGTGGGAGCTCCAGGGGATGGATTATAAAAATAAAAAGTAGGAAGATTTGCAAAAAGAATTGTTCTATTGACGGCACATCTTAGAAAGAGTCCAAATAATCTTTACTAAGATGGTTGTTCCAACTGAATAGCTGAATGGTTGAGTCACAGGAGTAACAATCCAGCTGCAATATGATGTGCAGGCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTTCTTTTTTGCTGTTGCTATATGATATATTATAAGTTCTCATTGAACCATAAAGCTAAAGGAGAAAAAAAAAAGAAATACACACTGCTCTCGTAGATATTAACAGAAGGCTAATAACATTGTTGGCTGTACAAAGGTCAATCTTTATTCCATACATTTTGAAAAGTCAAATTAACTTAGTGGGCTATATTTCAGCGTGTGAAAAAAAAGAGAGTTTAAGATATCTTGAAATAATATTAACTTGCCACTTTTTTAAAAATAGATATCTTGAAATAACTTTTTGGCTCCTTCCTCTCCCTTTGGTATGTACAGTGAGACTTTTGTGTTCTCTATGTAAAGTAGAGATGTCGTCCGTGCTCCTTTATGCCTGATTATTAGTGGCGACAATTGCATTGGAAAAAGGATGTAAAACTGTATTTCCTTAAGTTTTGTTACTACATGTCGATTGCATCAGACCAATCTAATTGCCATGGGCTAACTAACTATTACATGCTCTACAGATGCAAGAGAAATCACCGTTCTACATAATATCTAAAAGTATTAAAAAGGATATTAGGAATAAAGATCCAGGTTGCTAAGTCTGGTGTTTAATCGAAGATTCTGCTTTTATGTGATTAATTTTCTTGTTCTTTCTTGGTCCTGCTTCTACCTGCAGAGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATGGTACACTTATTTTTTTCTTGATACATCTTATGTCAAGTTTTTCATGGAAATTCAATTAGGATGTGTGCAGGTTCTTAATACTTTGTACTCCGCTATGAATGCTTTACTTGTGTAATCTTTCAAATAGTTCTGTACATGAATTTGGTATTATGTCCAAGCTGTAGGACATAAAAGTTCAATGGAACAGTAATTCCATAATATATCTTGGAAATTAATTTTTCCACGGGGTATATAGCGTTTTGAAGGAAGCTTATATCCACTAATGCTTTTGTTGTATCTTTTTGCAGAGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAGGTAATGCTGTTTCTGGTGTTCGATGAACATATAATTTTCTCACCTGGGATTTACGTGAGTGAGAACATTTACGAGCTGTAGGAGTTTGATTTGTGATATATTTCCTAGTCTCTTGATGCAAAAAGGTAATCGAGGTTCATCGGGTCATATCTACTTATCCCTTAAACATTTGTTAGGATCTAGAACACGAAATTCTAGTGCATTAGTTGATTTTTCTATGAACCTCTTACTTTTTAAAAACAGTTTTCCTCCCCAAGAGGACATCAGAATCTAGTATGATAGACAGACATAGCTGAGCGTCAATAAGCCAGTGATCCACACAGTCTCCGCTTATTTGTACAGTTATGGAAGCAGGAGGAACAGGTTACTTCCACTGTTTGGTGGAGAAAGTTACTGGTAAATCTTGACCTCCCATTCTGAGATGCCTATCTCACTCGATAAAGAAAAAAGAAAAAACACTCCATTCTTATCTTCAGAGCAGTAATTCTAAGTAAATGTCTCAGTAGTTTTGGCCAAGTTGGGAAGTTTAACATGTAAAACAAGACAACGAGGGTCCAAAATAGGAGGCATATCATGCATAATAAGTGATACCCACACCTGGAAGAGATTACAGGTAGAGCCTGCTAACATAAACTTTTTCCAGACATATTTGGAATCAATGATATCTTCTGAGTTCTTACTATCTAACCTTTCCCAGTGTGTGTCAAATGAATTAATTCAGTGTAATCATTTTGTCTTGTGTTTCAATATCTTGGTGCTGCAATTGGATTGCTGAGAAAATCATTTGTAATTTGGAGCATTATTGAAGTGTGTAATATTACTGAAGCATGCAACATGTGATAATCTTTAGATGAGCTAAATCTTTTCGAGGTGTTGCCTTCATAATGTCTAAAAGGAAGTGTATGAGTTTTATGTCATTGACTAGCCTCTAAATCAGTTACTATGTGGTTGTTTTGGGGCAGTTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</genome_strand>
        <mrna_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATG...............................................................................................................................................................................................................................................................................................AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343133" ref_strand="+" ref_description="SGN-U343133        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:20955811-20957077 FORWARD | Aliases: F14J16.33(evalue: 9e-24, score=107) genbank/nr: At1g56020(evalue: 6e-22, score=107)">
      <seq>ctctttctttttatatatatatatattccattctgtaatcgttacgttaacgtttcttctatttgtatgtacgccggaaattatggcttcagcttgcgttaacaaaatgggtatgtcgccggagaagtttttggattgttctccggctgcgaagtacaagtcatatggttggttaagtccaaggatgtcatttagtaaggacggcgaagcttccaaagttgccggagctaagcagacgagtgttgaaaatgataaagtggaggaattagatccagaagtttcgaaagatatgggcgattttgagttttgccttgaagatccggttaatatgctgccagctgatgagctttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="12336" stop="13290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12636" g_stop="12990" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-U343133" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12636" e_stop="12990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAGGGACGGCGAAGCTTCCAAGGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAGGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATCCGGTAAATATGCTGCCAGCTGATGAGCTTTTTTTC</genome_strand>
        <mrna_strand>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAAGGACGGCGAAGCTTCCAAAGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAAGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATCCGGTTAATATGCTGCCAGCTGATGAGCTTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331867" ref_strand="+" ref_description="SGN-U331867        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5687936-5691191 FORWARD | Aliases: F19K19.6, F19K19_6(evalue: 5e-40, score=160) genbank/nr: gi|42562100|ref|NP_173110.2| expressed protein [Arabidopsis thaliana] (evalue: 3e-38, score=160)">
      <seq>aacggtaaaacccagaatcgacaaaacaatggttaatgagtatacattctgttttggagtagtggttagcatattgcattgttagactgtctatgtcacttctcagttgcttgatacttatggaaatgcatattttattacatttaagttgtttttcaccttgttctctgttagtgcaaatcttccctccatggctgaagagttcaagtattcttgcaacactgccagtgaaaccctagaatggatccatgcaattatcaacttcattgcaccttatcgttattttatagatgctcatgtcgtcaactttttcaaggatagactatgggaagctgtggataaagaatggatggattgtttacagaaggagtcggttgaaaatcttctccggattccttctggtgtggttcaggatcactggcctggctcacttaaagacttcatacttactctgaggtctctttgtctttcacgtgaacaggctgattttcaggaattttcaggaatgcacatagcttcactaagtaatgttttagctcaaggcatgaatcataagaaaaagcatgaagtggaagtactttctgctctggtcagcttagtcgcaaagcaagttggtgcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="20014" stop="22634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20314" g_stop="20629" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20630" i_stop="20756" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20757" g_stop="20852" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="412" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20853" i_stop="21387" i_length="535">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21388" g_stop="21468" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="493" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21469" i_stop="21738" i_length="270">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21739" g_stop="21813" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="568" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21814" i_stop="22281" i_length="468">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22282" g_stop="22334" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="621" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-U331867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20314" e_stop="20629"/>
          <exon e_start="20757" e_stop="20852"/>
          <exon e_start="21388" e_stop="21468"/>
          <exon e_start="21739" e_stop="21813"/>
          <exon e_start="22282" e_stop="22334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTAAAACCCAGAATCGACAAAACAATGGTTAATGAGTATACATTCTGTTTTGGAGTAGTGGTTAGCATATTGCATTGTTAGACTGTCTATGTCACTTCTCAGTTGCTTGATACTTATGGAAATGCATATTTTATTACATTTAAGTTGTTTTTCACCTTGTTCTCTGTTAGTGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAGGTCTTCACCTTCTATTCAGTTTACATAAGATTTAATTGATCTATTTTTGCTACTGTTTATGCTTTGCATATTGCACTCTGCTGCTATTTCATGTGTAAACTTGGAAATTGTTTGCGAGTATATGCAGGATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAGGTAGATATAAGCACATATGTTTTTTGCTTTAAACTTGATATTGTTGAGTTCATGTGTACTTGGATCATTTCTAGTTCGAATTTGTTTGGTTAGTTTGAGTTATCGGAAGTGTAGAGTTACTAGGAGGTTCATTTGCTGCTTTGCTTTTCAGGAAGAAGAATTTCACATTTTTTGTGTTGAATTACTTGTACAGGGTCAAGCAGTAGCACATAGTTTCACTGCTCAATACTACGATGTGAGCTTATCTTTGAATATGACAAGTTCAACGAATAGCAAAGTTCCATTGGCTTGATTGGCCACTAATTATAGCAAATGTAATTTGGATAAATATAACCATATTTATGGTATCTATTCCTTTTGCTGTATGGTTTTAAATAACAAGAATTTCAATACTTGAGTTTAATGTCACCTATCCAGAACTAAAAGGAAAAAAAATGAGAGGAAACAAGTACTTTATTGTCTCCCAACTATAGTATCTATAGCAGTAAGATGACCTATTTCTTTGTTAATTGACTTTGTTTATTTGTGTTGTTAGGATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAGGTATATTTATTTTTATTATCATTCTTTTCTTAAATTTGTGATACATGGTAGTTATAGATTTACCATTAGAGATTTTCGACTTCTCGAATGCCATTGTTCTTACTCATGCTTTTCCCATATTTGAAGTTTTGTACACATAGCTTTCTTTACTGGTGGCATTTCTTCTGGTTTGTTGCTGTGGCATCTGGGTTATGATATCTGTATAACTAGACTAACATTTCACAAGGGAGTCAGGAATTGAATTTCACTTCTTCTTCTGTTTGCTTGCAGGAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAAGTAAGGCATGAAAGTAGCTTAGTCCTCTTACACTCCTATCTTTGTGCTCAATTGGTTGGCTACAAATCTGTGGAACAGTGTTTTATTCTTTGCTTTGAGTCTTTTGTGTGCACCACCTGCTGATATCAGGTCATTTGCGAAAGCTTCTTCTTTTTTTTTTACCATCAAGCTATTAATATTAGCCTTTAGCTATGTGATGCTGGAGTTTTTTTCTAACATTGAATTTTCTAGCTATGTGCTGCTCTAAGTATCCGTTTCAGTGTTCATTTTGTTTTCTCAACCTGAATGAAAGAATGTAATAAATTTTCAGAAGTTTTAACAAAATGGATCAAAGATATACGAGTGTTTTTAAAAAAAAAAATAATTTCTACATTGAGCTTAGGTTCAGAAAACCAACTAATGCAGGTTCCGTGTATGGGTTCAATTTTCTTAACCTGAACGATAGAATGGTAAATACTGTCTAAGCAGGTGGAAGTACTTTCTGCTCTGGTCAGCTTAGTCGCAAAGCAAGTTGGTGCCCG</genome_strand>
        <mrna_strand>AACGGTAAAACCCAGAATCGACAAAACAATGGTTAATGAGTATACATTCTGTTTTGGAGTAGTGGTTAGCATATTGCATTGTTAGACTGTCTATGTCACTTCTCAGTTGCTTGATACTTATGGAAATGCATATTTTATTACATTTAAGTTGTTTTTCACCTTGTTCTCTGTTAGTGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAG...............................................................................................................................GATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAG..............................................................................................................................................................................................................................................................................GAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGTACTTTCTGCTCTGGTCAGCTTAGTCGCAAAGCAAGTTGGTGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325723" ref_strand="+" ref_description="SGN-U325723        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5687936-5691191 FORWARD | Aliases: F19K19.6, F19K19_6(evalue: 1e-22, score=103) genbank/nr: gi|42562100|ref|NP_173110.2| expressed protein [Arabidopsis thaliana] (evalue: 1e-20, score=103)">
      <seq>tagggcgtcaggggaaagccttacggcgccaacagaatcaaaggatcctggaatccaatttgcatcatgggggatcttcagaatctggtgaaccacgggagagtgtggcgtttcttcatgaatactcttctattcagagttctaatcgcggcgagtctaacgctgtggacagatgctcactatttgcaaaattttgcgagtctgggttaggtcgtttacatctccctcatttggcggatacagcttacagtgcaatctggagggagtctgaatcatacgctgagttaataggaccttattggtctcttcgtgctgccctgggccccgttttggaaactcttatactgcttgaccgattgttgctcctccaggagtatggcagtgatctggaggcaagcctcttacctatttttaatcctgtgttatctccgaggaatatggctatcatagctaggaaaattagaaagtagaaaattttctacagtctctaaaaatgtgattcaacatactgtgttgctatgatttgttctcagatattttgaccgcttctgtgttatcctttttttaataaatcttccttaaccaagagaaaaaatgtcagaagaaaggaagcaatttgcgaccaggaacaagctatattattacagatgtctttttaaccagaaaaagaagaacagaagaaacaggaaaaattttgcaaccaggacctagctttgtacatggtccaagcaaaaaatgaagctttagtggtgaaatggtattatatttatttatctataaatgatatttggtttgcaaggtgtctctttacacatttgatttcaagtttatatactgctgtcttttttcaaggtgagaagacaagcccaaaaatgagaatgtggttatcaattgaaatatatatccaacctattgctaatttaaatgttggtttcacattttgactactcagggtttttatgattatgatattgtcctttattcactttgggatgtaatgtcatgagaaattgtcctttttaatatataagttgtggagggttgtgtcccctgtcctatgaagtattcaaggcccatagcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="24903" stop="55628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25203" g_stop="25289" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25290" i_stop="25637" i_length="348">
            <donor d_prob="0.793" d_score="0.96"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25638" g_stop="25828" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="281" r_length="194" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25829" i_stop="26549" i_length="721">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.241" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26550" g_stop="27358" g_length="809"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="1090" r_length="809" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27359" i_stop="27629" i_length="271">
            <donor d_prob="0.984" d_score="0.82"/>
            <acceptor a_prob="0.322" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27630" g_stop="27658" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1091" r_stop="1119" r_length="29" r_score="0.448"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-U325723" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>1116</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25203" e_stop="25289"/>
          <exon e_start="25638" e_stop="25828"/>
          <exon e_start="26550" e_stop="27358"/>
          <exon e_start="27630" e_stop="27658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGCGTCAGGGGAAAGCCTTACGGCGCCAACAGAATCAAAGGATCCTGGAATCCAATTTGCATCATGGGGGGTCGTCAGAATCTGGTGAGTATTGTGAAGGATAGATACCATTGATAAACTTAATTGGGTTTCAAGGTATATCTAGTATTCATTATAACTTCTGTCAAATGCTTATTCTTAAGATATATCATATAATTTTGACCAGCCTTGTAAGTTGTAGATTTCATCATTTTATGCTGTACATATCTTATTGTCACGCCCCAAAACTGGAAGGATGCAACTGACATTCCATGAACATTTTTTTAAAAATTTAAACACAACATCGGTCGCCTAAACAATTGAAATAACACAAGTGACTGTATACACCCAAATTTCGAAGCTTTATGAAGGCTACCTATTAAGAAAATAAGCTCTTAAGTGCTTTCTATGCAGGTGAACCACGGGAGAGTGTGGCGTTTCTTCATGAATACTCTTCTATTCAGAGTTCTAAT---AGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCTGTAAGTAGAAGATCTTTCATGACATTATTACTTTTAATTTCCTTGGAGCATTACTAGTTGTCTTCTGTACTTGAAAACTACAACATGAAGAAACCCAATACAGTCTAGCTGTACTTTAAAAACTGTTAGCGGTAAATCAAATGCAAATGCAATTTCAGAAACCTTGTTCTCTTTCCTTTACCTTTTTAAAACAAATTACAAGACAGTATATTAGTTCTGTTTTCCTTTGCTTATCGGCTGGCCAAGATTTGACCCGTTACTTTAATGAAGAGGTGTCCAGTTTGCTCAAACTGCAAGTCATTGGCAAAAACCTCTTGTGGATAGTTGGATGATTTTTAAATGGTCAACTATTTCTTCTCAGCATCAATTTGATTGACGTGATTTTAAAAGGTCAAAAATATCTTAATTAAGTTGAAGTACCACAATATTGGAGCCTTGTTGTTTATTAGTCGATGTAATAGCTTTCACTTAGGAATGGAGATCTGGTGGTTGTACATTATGTACAGCATTATTGTACTTTCAGATTCTCATGAGTTGAACTTACCAGTCCTAACTAGCTCAAAATATGTCTATGTGTGATCCTTGGTGGTTTTGTTCTCGAGAAAGTAAAGATGTCTGTTATTTCTTATATTCTTTTTGGGGCCTGATAAATAACCAAAAAGATTCCTTAAAAGGAACAAGAATCTTTCTTACTCTGATAAAAGTAATTAACGTTCCGCAGGAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCGACCAGGAACAAGCTATATTATTACAGATGTCTTTTTAACCAGAAAAAGAAGAACAGAAGAAACAGGAAAAATTTTGCAACCAGGACCTAGCTTTGTACATGGTCCAAGCAAAAAATGAAGCTCTAGTGGTGAAATGGTATTATATTTATTTATCTATAGATGATATTTGGTTTGCAAGGTGTCTCTTTACACATTTGATCTCAAGTTTATATACTGCTGTCTTTTCTCAAGGTGAGAAGACAAGCCCAAGAATGAGAATGTGGTTATCAATTGAAATATATATCCAACCTATTGCTAATTTAAATGTTGGTTTCACATTCTGACTACTCAGGGTTCTTATGATTATGATATTGTCCTTTATTCACTTTGGGATGTAATGTCATGAGAAATTGTCCTTTTTAATATATAAGTTGTGGAGGGTTGTGTCCACTGTCCTATGAAGTATTCAAGGACAATAGACAAATGACAGGTGATGACATGAACTTTAAGCTAATTACACATTTTATATTATGTTATTCTTGCTTCCTTAGAGTGATTTCAAGTTCCTCGCAGATAACTCGTTCTTGTATTTATATGTTATTATTACATAAGTGTCTGGATTGTGGTGTATGGTAATCGTGCTGTTGATTAGTCTATGTAAAGGCTGAAATAGAAGCTTAGTTAGTTGCAACAAACTATAAAGTGCATTGTTTATCATGATTACCATTGCTAAATAGAATGTAGTGCAGGTTTACCTGCAGGAGAGAATGACTTGCAAAATCTTTAAAGA</genome_strand>
        <mrna_strand>TAGGGCGTCAGGGGAAAGCCTTACGGCGCCAACAGAATCAAAGGATCCTGGAATCCAATTTGCATCATGGGGGATCTTCAGAATCTG............................................................................................................................................................................................................................................................................................................................................................GTGAACCACGGGAGAGTGTGGCGTTTCTTCATGAATACTCTTCTATTCAGAGTTCTAATCGCGGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCGACCAGGAACAAGCTATATTATTACAGATGTCTTTTTAACCAGAAAAAGAAGAACAGAAGAAACAGGAAAAATTTTGCAACCAGGACCTAGCTTTGTACATGGTCCAAGCAAAAAATGAAGCTTTAGTGGTGAAATGGTATTATATTTATTTATCTATAAATGATATTTGGTTTGCAAGGTGTCTCTTTACACATTTGATTTCAAGTTTATATACTGCTGTCTTTTTTCAAGGTGAGAAGACAAGCCCAAAAATGAGAATGTGGTTATCAATTGAAATATATATCCAACCTATTGCTAATTTAAATGTTGGTTTCACATTTTGACTACTCAGGGTTTTTATGATTATGATATTGTCCTTTATTCACTTTGGGATGTAATGTCATGAGAAATTGTCCTTTTTAATATATAAGTTGTGGAGGGTTGTGTCCCCTGTCCTATGAAGTATTCAAGGCCCATAGCCCAAAAAAAA...............................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334483" ref_strand="+" ref_description="SGN-U334483        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gattagtcaatccaaaatttttccctaaaaggaaaacctatttatgttaagaaattatggtaaataaaatccaacaaatctcctcccccttggcctgtatttctgaccaaaataaatttctccacattcttcatttaatcttcaacaacttgcttctcttcttcttaatctcctttgtaaaatttatgtctcaaccatagaaaacctctctgaaacaatttctccaacaaaatcttcattactgtcaaaaagattgcggctagaacctaccacctgtcaagatgaaccaccaccctctttctaacctggtccaataatcgattatcgaaccactgaacctgacctctgtcattaaatggctctaatacccacttgttaggatcgaaataagcaggtgtaaatgcggaagctagcaaagcaaacttcgaaagaccacgagtaagaagacaacgagaaatataccaaaagacaccaaagatttaacgtggttcggtcaatcgacctacgttcacaaaggagatgagcaatccactataaatatgagagtacaatatacagagagaaacaacatcaaccaattcattcggaatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="29963" stop="31147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30263" g_stop="30847" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-U334483" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30263" e_stop="30847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAGTCAATCCAAAATTTTTCCCTAAAAGGAAAACCTATTTATGTTAAGAAATTATGGTAAATAAAATCCAACAAATCTCCTCCCCCTTGGCCTGTATTTCTGA-CAAAATAAATTTCTCCACATTCTTCATTTAATCTTCAACAACTTGCTTCTCTTCTTCTTAATCTCCTTTGTAAAATTTATGTCTCAA-CATAGAAAACCTCTCTGAAACAATTTCTCCAACAAAATCTTCATTACTGTCAAAAAGATTGCGGCTAGAA-CTA-CACCTGTCAAGATGAA-CA-CA-CCTCTTTCTAACCTGGTCCAATAATCGATTATCGAACCACTGAACCTGA-CTCTGTCATTAAATGGCTCTAATA-CCACTTGTTAGGATCGAAATAAGCAGGTGTAAATGCGGAAGCTAGCAAAGCAAACTTCGAAAGACCACGAGTAAGAAGACAACGAGAAATATACCAAAAGACA-CAAAGATTTAACGTGGTTCGGTCAATCGACCTACGTTCACAAAGGAGATGAGCAATCCACTATAAATATGAGAGTACAATATACAGAGAGAAACAACATCAACCAATTCATTCGGAATATATG</genome_strand>
        <mrna_strand>GATTAGTCAATCCAAAATTTTTCCCTAAAAGGAAAACCTATTTATGTTAAGAAATTATGGTAAATAAAATCCAACAAATCTCCTCCCCCTTGGCCTGTATTTCTGACCAAAATAAATTTCTCCACATTCTTCATTTAATCTTCAACAACTTGCTTCTCTTCTTCTTAATCTCCTTTGTAAAATTTATGTCTCAACCATAGAAAACCTCTCTGAAACAATTTCTCCAACAAAATCTTCATTACTGTCAAAAAGATTGCGGCTAGAACCTACCACCTGTCAAGATGAACCACCACCCTCTTTCTAACCTGGTCCAATAATCGATTATCGAACCACTGAACCTGACCTCTGTCATTAAATGGCTCTAATACCCACTTGTTAGGATCGAAATAAGCAGGTGTAAATGCGGAAGCTAGCAAAGCAAACTTCGAAAGACCACGAGTAAGAAGACAACGAGAAATATACCAAAAGACACCAAAGATTTAACGTGGTTCGGTCAATCGACCTACGTTCACAAAGGAGATGAGCAATCCACTATAAATATGAGAGTACAATATACAGAGAGAAACAACATCAACCAATTCATTCGGAATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322483" ref_strand="+" ref_description="SGN-U322483        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: ANAC022 | transcription activator NAC1 (NAC1), contains Pfam PF02365: No apical meristem (NAM) domain; identical to NAC1 GB:AAF21437 GI:6649236 from (Arabidopsis thaliana) | chr1:20950236-20952906 REVERSE | Aliases: ANAC022(evalue: 3e-76, score=282) genbank/nr: gi|34558777|gb|AAQ75123.1| salicylic acid-induced protein 19 [Capsicum annuum] (evalue: 2e-101, score=372)">
      <seq>ttttccttttactatattctaaaaatatgacacataatattttaagtactatattaagaaataaaattagtttgtcttcttaaactcaagggtcgttgttggatgctttttacactattatcttaattttaaaattctctttttatttttgtgatacacttttattagctagccaccaaataaccaaaatatcacgatatatataaatttattcaaaataatttctattatattttatatattccaaaacttttcatttttttttataaattttgtgtctagtcaacatgaatacatataactttttcagtaagttttattaaatacgattatatagatcaaaaaagaaattttttattaaattttatttcagttcaaaatagcgtaatttaaaataatattgaaattagccatgggactataataactagtgcttatatatagatgtagtagagtaccattttagtgatgttaatagggaaatatttttatcaaccacctccccttggactttgatacacttaaatctcctctttcttttcatttctcttcaaaatgagtaacaacaacagcttgagcatggtggaatccaaattaccaccaggatttagattccatccaagagatgaagaacttatttgtgattacttaatgaagaaagttgatcaacaatccgaatatcaacaacaataccctcttctcatagaagttgacctcaataaatctgaaccatgggaaattcctgaagtggcatgtgttggagggaaggagtggtacttctacagccaacgtgaccgaaaatacgcgacggggctccgaacaaacagagccaccgtatctggttactggaaagccaccggaaaagatcgtgcaatcatcagaaaaggaagtctagtaggaatgagaaaaaccctagttttctatcaagggagagccccaaaaggaagaaaaagtgactgggttatgcatgaattccgcctagaacttcccattcgtcctcaaatttcttctatcaaggaggattgggtattatgccgagtatttcacaagaagaaggaattacttgctacaaagcaagaaattggaagcaacaatatatactacgataacgatacaataagttgttcatctctaccaccattaatggatccttacattactttcgaccaaacaaaccctaacaacaataatatgaatatgaatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="34667" stop="40079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34967" g_stop="35711" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35712" i_stop="37725" i_length="2014">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37726" g_stop="37997" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="1017" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37998" i_stop="39589" i_length="1592">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39590" g_stop="39779" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1018" r_stop="1207" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-U322483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34967" e_stop="35711"/>
          <exon e_start="37726" e_stop="37997"/>
          <exon e_start="39590" e_stop="39779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTGGTACGTTTATACTAATTACTTTTACAGAATCTTATAATTTTTTCGTAGATTCGAATTTATTTCATTCACATCTTTTAATTGATCACACACTTTTATGCTTATATATATGAATTTTTTGTTCGTGCCACATAGTTGGGTTGTGGATCAAGTGATAGCTAGCTAACGGATTGGTCCAAAGTTTTCATTTTTTTGGTTTCTATTTTTCGTGGATAAGAATATCATACACTGCTAATAATAATTGTGATTAGTCTTAATTAGAAAAAAAAAATTTATAATTAAAATTGTCTTCTTCGTTAGCATTAACACTTACCAATTTTAATTTTCTTTATGCTTATTCGTTTGTTCACACTGCGTATGTTAAACGCTCTCAAAGTATTTCTACAATATAGCTTGACTTTCCTGTCTATAACCCAAAGTCTTTAATTTATATTTTCCAAAATAAGTAACCACAGAACATTTATTACCATGGTCCTCCTGCTTTATTATTACTTTTTTTAATAAAAGAAATTAACCATCACATAATAATAATAAACACTTCTCGCTAAAAAATTATATTAAATTTACAAAATTAATTATTTTTATGATTCTCTTTGAGTTGTATTTGTATATGTGAATGATATATGAGATATATACGAATTAATGGTTCTCATAAGGTTTCTCATTCAATTAACTTTTGTAGAAATTGACAGTATTGGCATATTGTGTTGAACCAAAAGATGGTGAAAGCGATAGAGATTAATGCAAATATTGATCAATTAACTTACAACATGGCATATATATCTCTTAAGTGACTTGTGTCGACCACACGCGTGTACATTTATACTCCAATTTAGACAAAATTTAAGTACCATTAATTCTGGTCATAACTTTACCCCGTTTAATTTTAAAGCTATCTTGTCGACATCCTCGATTTTTCTTTTGCCATTAAGAGTGTCTCGATCAGTTTATATCTATCTCGATTAAATTTATTGGATATGTATCTTCAGAGATGGATTAGGGGTGGTAAAAGCGGATTTTCAAGAATTCAATTACTTTTGTGTATGATCGTATATTTATATTAAGAAATATTTTAAATATATTAAAGAAACATTTGTCGAGAATACAATAACAAAGTAGACACTTGGTTCCATTCCTCTTCTTTTTTTCATACTCTACCCATCGATCAGGAGGATCAATAGTGTTCTCACTTATTCTTTTGCATTAATGGTGGGGTATGATTCCGCTTATACACGTACAATAAAATTTTACTTATTTTAATTTTTAAAATCACTAGCTATAAACTCGTTATAAACATCAAAATGTGGATTGACATTTGTATTTTTCCAATACATATATAAATAAAGATAATAGATATCTAATGAAATTAATCGAGGTATTTATGATAAATTTTGGAGATAAGCAAATATATCTCCAATGAAATTAATTGAGCAAAAATTGATCACCTAGCTAGTAATTTTTTGGGGTCAATTTAATCCCTTTATTGTAGGAATATAATTCTTTCTTTTACATATCTATTTTCAAAGGAACAGTAATATACACGCACTATACATGTAGGTTCTTTGAACTTCAAATTTCCCCATCAACATCTTTTACCTAAGCCATTTGCATAAATATGGCCCTCCAATAATTAATTATCTCCATTTTTGGATAGAGATTTTAGCACTTAACCCATGCATAAAAGTTTAGGCTATTTTTTCAAAAATAAAACAGGTCCCCTTCCCTTTTTATCATCATCTTCTTAATTTTCGATAATAATACTATGAAATTGACATATTCCTTTTTCCTTTCATTTTCTCATCCTTTTATTATTTGTTTCTTATGCTACTCAATCCTATCTTCTTATGATGCATGTCACGTCGAAACTTACTATGATTTTCTAGAAACAATCAATCAATATTGAACTATGTAATCATCTCATTTAGACAAAGATCATATCTTTTATTATTACCATTGAATTGTGTAGTACCTAAGCTAAAATTAGTTACTTAATCATAACGTTATATATTATTTACAGAAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAGTTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAGGTACTCTACCATCTCCAATTGAGTTCTAAATTTAATATTTATATATTTGAACGCACATGTTTATATATACTAATAGAACATCGACTAATAAACCACAGATTTTTTTTTTTGGTAAGTTTTCATAAAATATCATTTACATGTGCAATTGATTTACTTTGGAGTATATATGCTTAGAGAATATTATATATATATATATATATCATATAATACATGCATAAAATTCTATATATATTAAACAAAAAAATTGTATATGTAAAAAAAAGGTAAACTAGTTCTTCTTTGGTCATACTGTCAATTACTTTTGCCGATAAATATGACGAATTGAAGCATTTAGGTCCATAAAAAGTTCATTAATTATTATATTATGAAAAAAAATATATCATAAAAACTATAAAATAAATAAAGTAGATAAAAGTAGTTTTCAATTGAGAGAACTGTCCATTCATATTTAAAAAAAAAAAATTATTTGAGAAATTGTGAAATAAGCATGAATTTAATTTGTCGTTATGAAAAATACAAGTATGTGGCTGTACATAATAAATGACAGTTCATATATATTTATGGCCCATGATAATGAACTTTTGGCTTAATTATCTAAATTATCCTTTTCTCTTGGCCTACTTATAATATAGTAATTGATTAATCCAATCGCTATAAATGCGGTTAAGTTCTTCTTGGAATCTTATTTTATATTCAACTGTAAACATCATTGGAAGTTTCCTCTATCATTTTAAGAATATGGTTTTATGAGTTATGACAAATATGTGAACTATTTTATCTTTTAAAAACTGTATTGGTAGTTGACCAACTTACAACTACTACCTTAAGTCATTTCACTTTTAGGAATTACATATTCACTAAATACAATAATAATAGTAATAATAATAAATATAGTGTAATCTTATGTGAAATTTGAAGAAGGTTGAATATATGTAGATTTAATCTCTATGTTTAGAAGATAGAGAAATTATTCTGCTCAATAGAGATATATCTAATACGGAAAAAAAAGAATATTTTTGACTAGGTATAAACTTTAAACGTTAATTGAAATTATATATAGAATAGGTAGTAGCTAGGAAATACAATAGAACATTATTGTTCTAATTTGATTAATGAATTTGATTCCTTGAAATCCTTGAAAGATTTGTAAACCAATTCATATACTATTATTAAATTATGTCAAATTTTGTGAGACATATCTAGCACAATTATTGTGATATAATATGTTACTAATCAGTGCTACAATGATAAGAAAAATATCTCATGATTCTTTCGTAATCTATGTTTAATCAGAATAAATTCCATTTCTCAATTATTATTTATTTAGATAACAACACAACCTAATTACCTAATCCCCTTGTCCTTGACCACGTCACGTTATTTCAGAAAAATAAACATTTTTTTTCTCATAAAAGAATCAATTACTTGGTGATCATGGATATTATTAAAATTCATTTAATATATATGGAACTTTTTTCTCTCAATTCGTTTAATTCATTTACGTTAATAGTGTAGTATATAGTACATTGATTATTATTATTATTATATTATATTATTAGCGTATAAAAATTGAACTTTTTTTAATGATACAGGAGGATTGGGTATTATGCCGAGTATTTCACAAGAAGAAGGAATTACTTGCTACAAAGCAAGAAATTGGAAGCAACAATATATACTACGATAACGATACAATAAGTTGTTCATCTCTACCACCATTAATGGATCCTTACATTACTTTCGACCAAACAAACCCTAACAACAATAATATGAATATGAATGAAT</genome_strand>
        <mrna_strand>TTTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAGTTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATTGGGTATTATGCCGAGTATTTCACAAGAAGAAGGAATTACTTGCTACAAAGCAAGAAATTGGAAGCAACAATATATACTACGATAACGATACAATAAGTTGTTCATCTCTACCACCATTAATGGATCCTTACATTACTTTCGACCAAACAAACCCTAACAACAATAATATGAATATGAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344159" ref_strand="-" ref_description="SGN-U344159        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|34558777|gb|AAQ75123.1| salicylic acid-induced protein 19 [Capsicum annuum] (evalue: 7e-32, score=140)">
      <seq>tcacccctaaccaaactttcacttcccatagccaccacctcccctccgccacaaccgccatcggatctaccgcatacggtggttttccagctgatattggaaattacctaaatgccactgcaacatcctctacgtgtgataataacaaagtaattagagctgttttaagtcatttgagtaccaagaataatattattatggaaggtaataatagcaataacaacaatattatcaatcctgcccaaaatataaaaggaggaaattcacctagctttggtgaaggaagttctgaaactagctttttatttgaggtgggatatcctacaatgtggaacaattattgatttttgagagaaaatattctacttagatgtgtgatataatatatgacaagtcttgttttagttgctagtattatattgtaatcttagaatatatatatataactatactagctagattaatttccaatgcatgtaattccaataatgatactttcctagtggttaaagtatataattgtctcctagatagattggaattctccgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="39513" stop="40662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39813" g_stop="40361" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="571"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-U344159" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344159" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39813" e_stop="40361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCCTAACCAAACTTTCACTTCCCATAGCCACCACCTCCCCTCCGCCACAACCGCCATCGGATCTACCGCATACGGTGGTTTTCCAGCTGATATTGGAAATTACCTAAATGCCACTGCAACATCCTCTACGTGTGATAATAACAAAGTAATTAGAGCTGTTTTAAGTCATTTGAGTACCAAGAATAATATTATTATGGAAGGTAATAATAGCAATAACAACAATATTATCAATCCTGCCCAAAATATAAAAGGAGGAAATTCACCTAGCTTTGGTGAAGGAAGTTCTGAAACTAGCTTTTTATCTGAGGTGGGATATCCTACAATGTGGAACAATTATTGATTTTTGAGAGAAAATATTCTACTTAGATGTGTGATATAATATATGACAAGTCTTGTTTTAGTTGCTAGTATTATATTGTAATCTTAGAATATATATATATAACTATACTAGCTAGATTAATTTCCAATGCATGTAATTCCAATAATGATACTTTCCTAGTGGTTAATGTATATAATTGTCTCCTAGATAGATTGGAATTCTCCGT</genome_strand>
        <mrna_strand>TCACCCCTAACCAAACTTTCACTTCCCATAGCCACCACCTCCCCTCCGCCACAACCGCCATCGGATCTACCGCATACGGTGGTTTTCCAGCTGATATTGGAAATTACCTAAATGCCACTGCAACATCCTCTACGTGTGATAATAACAAAGTAATTAGAGCTGTTTTAAGTCATTTGAGTACCAAGAATAATATTATTATGGAAGGTAATAATAGCAATAACAACAATATTATCAATCCTGCCCAAAATATAAAAGGAGGAAATTCACCTAGCTTTGGTGAAGGAAGTTCTGAAACTAGCTTTTTATTTGAGGTGGGATATCCTACAATGTGGAACAATTATTGATTTTTGAGAGAAAATATTCTACTTAGATGTGTGATATAATATATGACAAGTCTTGTTTTAGTTGCTAGTATTATATTGTAATCTTAGAATATATATATATAACTATACTAGCTAGATTAATTTCCAATGCATGTAATTCCAATAATGATACTTTCCTAGTGGTTAAAGTATATAATTGTCTCCTAGATAGATTGGAATTCTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323339" ref_strand="+" ref_description="SGN-U323339        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | DNA repair protein recA, identical to DNA repair protein recA, chloroplast (Precursor) SP:Q39199 from (Arabidopsis thaliana) ;contains Pfam profile: PF00154 recA bacterial DNA recombination protein | chr1:29741854-29745049 REVERSE | Aliases: YUP8H12R.33, YUP8H12R_33(evalue: 2e-172, score=602) genbank/nr: gi|18412241|ref|NP_565198.1| replicase -related [Arabidopsis thaliana] gi|2500098|sp|Q39199|RECA_ARATH DNA repair protein recA, chloroplast precursor gi|7443882|pir||T01050 hypothetical protein YUP8H12R.33 - Arabidopsis thaliana gi|289208|gb|AAA61781.1| DNA repair protein gi|3152570|gb|AAC17051.1| Match to nuclear-encoded chloroplast DNA repair protein (E. coli recA homolog) gb|L15229. [Arabidopsis thaliana] gi|15292903|gb|AAK92822.1| putative replicase [Arabidopsis thaliana] gi|21281181|gb|AAM45008.1| putative replicase [Arabidopsis thaliana](evalue: 2e-170, score=602)">
      <seq>ctcgtgccgatggaactccggcgacagcatagcctaagctccttcttcagcaaggagaactgagcttaagtatagtaatatctttcaatccgcttgaactttgtagtccaagagaacggagcttttaagctagaaactttaatggagttaactttcccagtgaaagctcagttatttggctccaaaattggtcacaaatctctaagctactcaacttcagtaaaattctaccagaaagtatctcgtcctcaattttcagcatgtggaatcagggttcgttcggaatttgaccataaaatcaatggcgctttctctcctgattctgacgctcggattctcgaccggcaaaaagcattggatgctgcaatgaacgatataaacagctcgtttggcaaaggaagcgttactagattgggtagtgctggcggagctctggttgaaacttttccgagtggctgcttgacgctagactttgctttaggtggtggcattcccaaaggcagaattgttgagatatatgggcccgaaagtagtggaaagactaccttagctctccatgctattgcagaagtacagaagctaggaggcaatgcaatgcttgttgatgctgagcatgcttttgatcctgcatactccaaagcacttggagtagatgtagagaatttgatcgtctgccagcctgataatggagagatggctctagaaatcgcagaccggatgtgtagatcaggtgccgtagatctcatttgcattgattcagtctcagcccttactccacgtgctgaaattgagggagaaatcgggatgcagcaaatgggtttacaagcacgcctgatgagtcaagctttacgtaaaatgtcaggcaatgcctccaaagctggatgtactcttatattcctcaatcagataagatacaagattggtgtttattacggaaatcctgaggtcacaagtggagggattgccttaaagtttttcgcctccgttcgacttgaaatccgttccacagggaagataaaatctgcaaaaggagacgaggaagtgggtattaaggtccgagtgagagttcaaaagagtaaggtttctagaccatacaagcaagcagaatttgaaattatgtttggagaaggagtgagcaagctgggttgtgtattagattgtgcggaactgattgaggtggtggctaagaaaggttcatggtataactacggagagcataggctgggacagggaagagagaaagcattgcaatatttgagagaaaatcctcttctctctgaagaaatagaaaagatggttcggtcatcggtgctagagacaaacgggtttttaggctcttcttcattgaaacatccactgccgcagcttctagaggaagatgcacttcaagagatgcaataacgcggatcagagttctgcttcaattgattatgataacagagcatttttcagccaacattgacatccatatgtgattctacattagaaatgagcaaagttggggacactgccagatttgctttgtatgagaccatttctgtgcactagagattcttgaagaaaggtgtatattcttgtaagctaatggatctttgcacgaagaggaagacacatacatcctgaattaaccaaactgaagaattagagttaaggtggtgaaaaggagtgttagctctttgctgcatattttgtctttgttttggttgtactggtagccaaaattttgaaaatctgaagatttttgcttgtaacatttgcattggaagtaccactctagtgttgcgttggtattattatcccattagctctatgcattaagaaatctagtaaaatatttgtctggtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="43617" stop="49034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43916" g_stop="44259" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44260" i_stop="44360" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44361" g_stop="44452" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="437" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44453" i_stop="44647" i_length="195">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44648" g_stop="44723" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="513" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44724" i_stop="45068" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45069" g_stop="45131" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="576" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45132" i_stop="45444" i_length="313">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45445" g_stop="45574" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="706" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45575" i_stop="45700" i_length="126">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45701" g_stop="45786" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="792" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45787" i_stop="45876" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45877" g_stop="46002" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="918" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46003" i_stop="46320" i_length="318">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46321" g_stop="46425" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="919" r_stop="1023" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="46426" i_stop="46514" i_length="89">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="46515" g_stop="46571" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1024" r_stop="1080" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="46572" i_stop="46991" i_length="420">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="46992" g_stop="47054" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1081" r_stop="1143" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="47055" i_stop="47127" i_length="73">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="47128" g_stop="47204" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1144" r_stop="1220" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="47205" i_stop="47680" i_length="476">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="47681" g_stop="47753" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1221" r_stop="1293" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="47754" i_stop="48182" i_length="429">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="48183" g_stop="48729" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1294" r_stop="1841" r_length="548" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1846" polyA_stop="1862"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-U323339" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1839</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43916" e_stop="44259"/>
          <exon e_start="44361" e_stop="44452"/>
          <exon e_start="44648" e_stop="44723"/>
          <exon e_start="45069" e_stop="45131"/>
          <exon e_start="45445" e_stop="45574"/>
          <exon e_start="45701" e_stop="45786"/>
          <exon e_start="45877" e_stop="46002"/>
          <exon e_start="46321" e_stop="46425"/>
          <exon e_start="46515" e_stop="46571"/>
          <exon e_start="46992" e_stop="47054"/>
          <exon e_start="47128" e_stop="47204"/>
          <exon e_start="47681" e_stop="47753"/>
          <exon e_start="48183" e_stop="48729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGCC-ATGGAACTCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGGGTATCTCTTTCTCTCTCTACATATGTTTGTATTTATAGTTCTGTATGTTGCTTTACTGAAGAATTCCATGTGACTGACTTCCCTAACTCCTCCTGCTTCAGCAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGTGTATGTAATTTTTTTACTGAATTCAAAAAAAGTTATATTTAGTTTCTGCACAGGAACCATGTCGAAACAAACATGAAATGTTTTGGGGAAAAGAAGCAGAAAATGAAAATGGAGAAAAATATTCTGCCCAAAATTTTGATCATTGTTAGACTATATCATTCTTACAAGCACTTGTGTATCTGCTTCTTTATGCAGTGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAGGTTTAAATTTCTATCTTTTTCATTTGTATTTTCAGTATGCATTAGTTATTACTGGTTATTCGCCATCTATTTGGTTTCAAATGCTTGGCTGCTTAGTTATTACTAACTTTTGGTTTTGATTACACATAGTGGACTAACTCCTACATGAAGATGAATAGAACAGTTATATTGACCTGTTAATAGAGTGAGTGCGTTAGAAATTTACTTATTTCATTAATAGGCTGGGGTATTTGATTCTGATGTTTGTCCACATCCTGAACTTCTCAACTGATGTGAGCATGTGGAATATTAACAAGGTTGCTGCAATTTGTTGTCTAATTGCTTTCCTCATATTTTTCTTTACAGATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAGGTGCAGTATGTGTTTGGTTTATTCTACTCATCAGCTTGGAACTTCTATAGGCATGGGGCTGCACTTGGAAGGGGAGGGGGCATTTGATTGTTTGGATGAAAAAGGAAGTCATATGCTTCTATCTTACAGATGAAGTGAAAGAAAATAATGGACAATTTGGAAGTCTAGAAAGCAAACTTAGAATCCTTTCCAGCATCCATTGGAGCTTTATTATTGTGACCAATCCACTGAAACCACTTGCCTTAGGCTTATTACTGAAAATGTTCTCATGTAAAAGGAGACAGATTATAAAATGTTAAATATTGTTATGCAGAAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCACTTGGAGTAGATGTAGAGAATTTGATCGTCTGCCAGCCTGATAATGGAGAGATGGCTCTAGAAAGTAACAACTTTTCCTTGTTTACACCATTAGAAATGATTTTTCAGTTTTTTGTGCTAGCAACCTTGTCAATAATCATGGTGGTCTTACTAGAGTTTGTACTTTCAACCAAACTTTTGTCTATCTCAGTCGCAGACCGGATGTGTAGATCAGGTGCCGTAGATCTCATTTGCATTGATTCAGTCTCAGCCCTTACTCCACGTGCTGAAATTGAGGTAAGCCAACATTTTAATTTTCTGAATTAATTAGAAAGCTTTAAATTGTTCCCACCAGTTCCTGATTTCACGGTCTCTTATTTTGTGCAGGGAGAAATCGGGATGCAGCAAATGGGTTTACAAGCACGCCTGATGAGTCAAGCTTTACGTAAAATGTCAGGCAATGCCTCCAAAGCTGGATGTACTCTTATATTCCTCAATCAGATAAGATACAAGGTATTCTTGACTTAGAAGTTGCACTGTTCTCTTTTCAAGTACTGAAACGGCAGCCTGGTGCATAAAGCATCTTGCGTTCACTAGGGTCCAGGAAAGGGCCAGATTGGGGTGTGATGTAGATAGCCTACCCTAATGTAAGCATTAGTGGCTGACTCGGTAGAACCCATGAGCTATAGGTCACAGGTGATGGATAATGTTGTCAATGAAAACTTGTCATTCTTGCTTCCATTGTGATTAACTTCATAAACTAGCATATTTCTCATCATAACTTGTGGACTTCACTTGATGAATGGAAGTAATTACTATGTTTCGAATCAGATTGGTGTTTATTACGGAAATCCTGAGGTCACAAGTGGAGGGATTGCCTTAAAGTTTTTCGCCTCCGTTCGACTTGAAATCCGTTCCACAGGGAAGATAAAATCTGTGAGTACAGAACTGCTCAGTCGGCTAGTAGATTTTTTATTTTACTCATTTAAGTCTCTTTATGAAAAAATTGTTGCTCTTCTTTTCAGGCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAGGTAAATCTGCTTCACGTCATAATTATTCAATGTGGTGCCATCAGTATTATGTTTGTGGGATGGAATACATATGGTAATGGTTCAGTTATACAAGTGTTCAGTGCTTAAAACTATAAAGCTGACATTTGCATAATAAAAGGTTATCATGGTTATTAAAATTTCCTGCACTGGAAGCATGGTAATTCCACTGTATGATCATTGTAAATAGGGGTATATTGTTGAAGACTTTATGTAGTTACTTTAGCGGTGCATCCACACGGAGGTCTCTTTTAGCGAAAACCTCTATTTATTTTAAAATTCTTTTAGCAAATACGGAGACATGAAAGAAAGTGCCAGTATACAGCTGGTCTTTTACTGTTTGCATCTTCTTGCTGATTATAGTGCCAACATGCTAATTGGTCTTATTATTATCCTTCTTAGGTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTGGTTTGTGGCATTCTTATCTTTCTTTTCCGTAGTGTTTGGCTCAAATTCTGTTCCTAAAATTGAGTTTTTGCAGGGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAGGTTAGTACATTTTGCAGTTTTTGCTATATTATAGGGACTTCGAAGAAGCTTACTAAACTTTTAATTTATGAAACTCCATATCTCAATAGAAATATTTGCATATTTTTGTCATGACCGCTCAAGATTCTGGGAATTTTCCACATGCTGTACTAGAAGTGACAGAGCTTATACTCGAATGAAAAGAAAACAGCTTAGGAGAATTGATAGATTTCATACTTTATGTGGTTGCTGATGGAAATAATTTGAAGTACTAAGAATAAGCAAGAAATTGACTTTCAATGTGATTGAAAACTGTCTGAGTAACTGATTATTGTTTCAGAAGCTAAGATTAATCAAAGATTTGTCTTATACTTCAGTGAGCTGAGTCTTGCAAGGTTCATTACCAATATTATGTGACTCGGCACTGTTTCTTGATGTTTTACTATATTACTAATCTTGCTTGAGTCAGCCACTGATTCTTGATACGTTTAATGAAGGCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAGGTATCCTGCTCTCCTTTTTAGGTGCATTTGGTAAGAGTTTTAGTTGTCATACTGTGTAAGATACTAGTTCAATATCTAAACATAACCTGGGAGGTTTTATATGGAAGTAAATAACCTGATGATAAAAGAGAACTAATAAGCAAACAAAATTCTGTTTGCATATTTGGTATGTTTGTTAGCTGATCTGTTCTGGTGTCTTGAGCTTGTAGGCTGTTATTTTAGATGAAAAAATGATGGAAACTATGACCATTTTATGTGGTCATAGTTTTTGAGCTACAGCAAATGTATTTATGTGGTCATAGTACCTATACACGAAGATAATATTCTTTTATATCGTAGTTATTAGATTAACATATTGAGAGATTTCTTGCACACTGTTTATCAATATTTTGGAGGCGGAGAGATGACATTATCTATCTGCCTGAGCAGATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTCAATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTGGGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGTGCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCTTTGCACGAAGAGGAAGACACATACATCCTGAATTAACCAAACTGAAGAATTAGAGTTAAGGTGGTGAAAAGGAGTGTTAGCTCTTTGCTGCATATTTTGTCTTTGTTTTGGTTGTACTGGTAGCCAAAATTTTGAAAATCTGAAGATTTTTGCTTGTAACATTTGCATTGGAAGTACCACTCTAGTGTTGCGTTGGTATTATTATCCCATTAGCTCTATGCATTAAGAAATCTAGT-AAATATTTGTCT</genome_strand>
        <mrna_strand>CTCGTGCCGATGGAACTCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGG.....................................................................................................CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGT...................................................................................................................................................................................................TGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................ATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAG.........................................................................................................................................................................................................................................................................................................................AAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCACTTGGAGTAGATGTAGAGAATTTGATCGTCTGCCAGCCTGATAATGGAGAGATGGCTCTAGAAA..............................................................................................................................TCGCAGACCGGATGTGTAGATCAGGTGCCGTAGATCTCATTTGCATTGATTCAGTCTCAGCCCTTACTCCACGTGCTGAAATTGAG..........................................................................................GGAGAAATCGGGATGCAGCAAATGGGTTTACAAGCACGCCTGATGAGTCAAGCTTTACGTAAAATGTCAGGCAATGCCTCCAAAGCTGGATGTACTCTTATATTCCTCAATCAGATAAGATACAAG..............................................................................................................................................................................................................................................................................................................................ATTGGTGTTTATTACGGAAATCCTGAGGTCACAAGTGGAGGGATTGCCTTAAAGTTTTTCGCCTCCGTTCGACTTGAAATCCGTTCCACAGGGAAGATAAAATCT.........................................................................................GCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTG.........................................................................GGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTCAATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTGGGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGTGCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCTTTGCACGAAGAGGAAGACACATACATCCTGAATTAACCAAACTGAAGAATTAGAGTTAAGGTGGTGAAAAGGAGTGTTAGCTCTTTGCTGCATATTTTGTCTTTGTTTTGGTTGTACTGGTAGCCAAAATTTTGAAAATCTGAAGATTTTTGCTTGTAACATTTGCATTGGAAGTACCACTCTAGTGTTGCGTTGGTATTATTATCCCATTAGCTCTATGCATTAAGAAATCTAGTAAAATATTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338952" ref_strand="+" ref_description="SGN-U338952        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | photosystem II 10 kDa polypeptide, identical to photosystem II 10 kDa polypeptide, chloroplast (precursor) SP:P27202 from (Arabidopsis thaliana); contains Pfam profile: PF04725 photosystem II 10 kDa polypeptide PsbR | chr1:29740911-29741831 FORWARD | Aliases: YUP8H12R.34, YUP8H12R_34(evalue: 1e-51, score=200) genbank/nr: gi|1217642|emb|CAA65231.1| PSII polypeptide [Lycopersicon esculentum] >gi|3914471|sp|Q40163|PSBR_LYCES Photosystem II 10 kDa polypeptide, chloroplast precursor (evalue: 2e-64, score=249)">
      <seq>ggcaagcacagtaatgagctcattgagcctaaagccaactttcactctggagaaaatatcagtgaaagggcttccatcacttactagatcttcttcttccttcaaagttgtggctagtggtgttaagaagcttaagactgacaaaccctatggaattaatggaagcatggccttgagagatggggttgatgcctcaggcaggaagcccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacagtcccatctacaacacggatgaatggtctccaagtggtgatgtctatgttggaggtaccactggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggcatcttcattaatatgtaattgctgtgattttactgtggataatattacatctaatgttgctgttaaaaaaaaaaaaaaaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaanttcggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="50660" stop="15561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50360" g_stop="50209" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49596" g_stop="49538" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="211" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49381" g_stop="49326" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49249" g_stop="49197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49085" g_stop="48853" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="553" r_length="233" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48852" i_stop="48586" i_length="267">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48585" g_stop="48563" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="576" r_length="23" r_score="0.652"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48562" i_stop="48120" i_length="443">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.46"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48119" g_stop="48056" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="640" r_length="64" r_score="0.469"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-U338952" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50360" e_stop="50209"/>
          <exon e_start="49596" e_stop="49538"/>
          <exon e_start="49381" e_stop="49326"/>
          <exon e_start="49249" e_stop="49197"/>
          <exon e_start="49085" e_stop="48853"/>
          <exon e_start="48585" e_stop="48563"/>
          <exon e_start="48119" e_stop="48056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATGGTATGTAATTAATAATCCAGTTTTAACTTATATACACCAACAATATTATTTGTCTAATTTGTCATGTCCCTTGTGATTTAGCTTTTAAGTTGTGACTTTATAATAGTATAGGAAATATTATATGTTGTCCGTGTATATATTCATCAAACTCTGCATATTTACTCATGACTTAATTGTATCATGTGGGTGCATTTTGGGGCTGTTGTTGTTAGTGAATTGTCTCATATTTGTCCTTGATGTTAATTAAGCTCTAGTTTAGATTGAGAGGAATTTAGGAGTAAAAAAGTTCAAATATGATTTAACCAATTAATTACCTGCTTCGGATTGGAGCTGTGTTAGGGTTAAGGGCTAACATCTGCTAAGTATAGTGGAGGCTAAAATTAGGATAATTGGTATAGAGAGTAGGTAGGTGTGTTTTTAATCCCTTTTCTCTCAAACTCTTTGATGAAAGCAGCTTGGTATACAAAGCATCCCATATTCGTAGGATTTGAGAAAGGGCCACAGCCTAAGAGATGTGATATAGACAATCTATCCTAATGCAAAACCAGAGATAGAATATTGTAATACAAAATTAATACTACCTGCTGATTATGAAGTGGATTTTGTTACTAGGAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAGGTTTGTTTCTACTTCTACCTTTGATAATATATAAGAATATCATTAATTAGTAGTAAAATAATTTTTTTCAAAATAAAAGAATGTGAATTATAGCAATTACTTTTCTCTGTGTGTATTTTAATTTCTAATATATGAGCAAAACATGGTGATGTTTAGGGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAGGTTAGTTAAATACTTGTTAGTTTGCACTAATATGAAACAATTAAAATCTTATACTTTGTGTGATTTTGAAATGCAGTCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAGGTTCTTATAAATCTTTTAAGTTTAGTCGTGATTGGATTGCCAAACAGTTATAAGCTAATCCAATATTTTGAAGTGTAAGGAATTCCTGCAACGATCTCAAATAACAATAATATATGAGTTCACAGACAAATATTTACTAGATTTCTTAATGCATAGAGCTAATGGGATAATAATACCAACGCAACACTAGAGTGGTACTTCCAATGCAAATGTTACAAGCAAAAATCTTCAGATTTTCAAAATTTTGGCTACCAGTACAACCAAAACAAAGACAAAATATGCAGCAAAGAGCTAACACTCCTTTTCACCACCTTAACTCTAATTCTTCAGTTTGGTTAATTCAGGATGTATGTGTCTTCCTCTTCGTGCAAAGATCCATTAGCTTACAAGAATATACACCTTTCTTCAAGAATCTCTAGTGCACAGAAATGGTCTCATACAAAGCAAATCTGGCAGTGTCCCCAACTTTGCTCATTTCTAATGTAGAATCACATATGGATGTCAATGTTGGCTGAAAAATGCTCTGTTATCATAATCAATTGAAGCAGAACTCTGATCCGCGTTATTGCATCTCTTGAAGTGCATCTTCCTCTAGAAGCTGCGGCAGTGGATGTTTCAATGAAGAAGAGCCTAAAAACCCGTTTGTCTCTAGCACCGATGACCGAACCATCTGCTCAGGCAGATAGATAATGTCATCTCTCCGCCTCCAAAATATTGATAAACAGTGTGCAAGAAATCTCTCAATATGTTAATCTAATAACTACGATATAAAAGAATATTATCTTCGTGTATAGGTA</genome_strand>
        <mrna_strand>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG............................................................................................................................................................GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG............................................................................TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG...............................................................................................................GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTAAAA...........................................................................................................................................................................................................................................................................AAAAAAAAAAAATTAAAAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANTTCGGGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338947" ref_strand="-" ref_description="SGN-U338947        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | photosystem II 10 kDa polypeptide, identical to photosystem II 10 kDa polypeptide, chloroplast (precursor) SP:P27202 from (Arabidopsis thaliana); contains Pfam profile: PF04725 photosystem II 10 kDa polypeptide PsbR | chr1:29740911-29741831 FORWARD | Aliases: YUP8H12R.34, YUP8H12R_34(evalue: 5e-33, score=116) genbank/nr: gi|1418984|emb|CAA99757.1| photosystem II 10 kD polypeptide [Lycopersicon esculentum](evalue: 1e-37, score=135)">
      <seq>ggtctccaagtggtaatgtctatgttggaggtacccctggcttagccatatgggcggtgaccttgcttggcattcttgcaggaggtgctctccttgtctacaacacaagtgctttggcgcaatagatgttatccttgtattgtactattaagtttaagttgtattccatgttatcttttcaaaatatttcttggaatcttcattaatatgtaaaagctgaacttttcctgtggataattttccatctaaaaaaaaaaaaaaaaaaaacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="49526" stop="48597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49226" g_stop="49197" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49085" g_stop="48868" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="248" r_length="218" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="249" polyA_stop="273"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-U338947" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338947" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49226" e_stop="49197"/>
          <exon e_start="49085" e_stop="48868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTCCAAGTGGTGATGTCTATGTTGGAGGTATGATTGTTTTTTTTAACTCGAACTATGTATATATACTCAACAACGTTTATAATTAAGTCACTACTCATTTTGAATCTAGATCCTAAATCACATGTAATATGATTGCAGGTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTA</genome_strand>
        <mrna_strand>GGTCTCCAAGTGGTAATGTCTATGTTGGAG...............................................................................................................GTACCCCTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGAATCTTCATTAATATGTAAAAGCTGAACTTTTCCTGTGGATAATTTTCCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344998" ref_strand="-" ref_description="SGN-U344998        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaatggtttcctttctctggcttcctattctttcttctttgtgttggtgggtggtttaggaggtgaaggggagcagcgtggttgagaccgagactatcaggtggctaagtttccttgtggtggtcttgattcttcatcaaggtggcaaagatagtttggctctaaaaatagatacggtactggccttctgtgatgaaatgtgcttgaaggacagagcttctatccaagaagacggcaatccacatcacaaagagtttggcttgattcaaccaatgagcggaaggagattgtccaaagctgtacacactccatgatgtgcgtgccaggtggatttcatgctggagttactgtaaatagggttggataaaaaacatttttgcgagagtgatctgcattccagccccctctgaagcacaggagtcagctgcatttcaaatgattacccaattacagactatggcagaccacacccattacatttaatgatggcaaagaaacagcaacaccaatatttttgaatcctattaatggctaccataccatagtactgtattagtttcattactttccagaagcatatattatgtgtgtctgtgaaactgaatttgttgtcttagaatattagttggttgcaacccgtatcagtgctttgaacgaaaatcaaggccaaatacattcggtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="53661" stop="52080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53361" g_stop="53221" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53220" i_stop="53125" i_length="96">
            <donor d_prob="0.527" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53124" g_stop="52940" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="326" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52939" i_stop="52737" i_length="203">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52736" g_stop="52380" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="685" r_length="359" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-U344998" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344998" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53361" e_stop="53221"/>
          <exon e_start="53124" e_stop="52940"/>
          <exon e_start="52736" e_stop="52380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTTTCCTTTCTCTTGCTTCCTATTCTTTCTTCTTTGTGTTGGTGGGTGGTTTAGGAGGTGAAGGGGAGCAGCGTGGTTGAGACCGAGACTATCAGGTGGCTAAGTTTCCTTGTGGTGGTCTTGATTCTTCATCAAGGTTTGGTAGTTTCTTGGAGTCTTGAACTGCTGTATCATGAACTTGAACTAAATTACTGTAGGCCAATGTGCTCATGTTTATTTTAATGCCTTGTAGGTGGCAAAGATAGTTTGGCTCTAAAAATAGATACGGTACTGGCCTTCTGTGATGAAATGTGCTTGAAGGACAGAGCTTCTATCCAAGAAGACGGCAATCCACATCACAAAGAGTTTGGCTTGATTCAACCAATGAGCGGAAGGAGATTGTCCAAAGCTGTACACACTCCATGATGTGCGTGCCAGGCATGTTTTGGCATCAGAACTTGCTTAAGTTTTATCTCCTCTTTTATCATTGTTTGTCTTGATCCACTCCATATATATTATGATGTTTGTGCTCTTGGTCTGGCAGTATGTCTGATAATTTGTTCCTTTGTTGAACGATCCTTGGAAATGCTTGTGTTTTTCATTCCCGATTCAACTAATCCTTGGAGTTCATTTTCTCATAGGTGGATTTCATGCTGGAGTTACTGTAAATAGGGTTGGAT-TTGTACATTTTTGCGAGAGTGATCTGCATTCCAGCCCCCTCTGAAGCACAGGAGTCAGCTGCATTTCAAATGATTACCCAATTACAGACTATGGCAGACCACACCCATTACATTTAATGATGGCAAAGAAACAGCAACACCAATATTTTTGAATCCTATTAATGGCTACCATACCATAGTACTGTATTAGTTTCATTACTTTCCAGAAGCAACTGTTATGTGTGTCTTTG-AGCTGAATTTGTTGTCTTAGAATATTAGTTGGTTGCAACCCGTATCAGTGCTTTGAACATTTATCAAGGCCAAATACATACGGTGCCT</genome_strand>
        <mrna_strand>AAATGGTTTCCTTTCTCTGGCTTCCTATTCTTTCTTCTTTGTGTTGGTGGGTGGTTTAGGAGGTGAAGGGGAGCAGCGTGGTTGAGACCGAGACTATCAGGTGGCTAAGTTTCCTTGTGGTGGTCTTGATTCTTCATCAAG................................................................................................GTGGCAAAGATAGTTTGGCTCTAAAAATAGATACGGTACTGGCCTTCTGTGATGAAATGTGCTTGAAGGACAGAGCTTCTATCCAAGAAGACGGCAATCCACATCACAAAGAGTTTGGCTTGATTCAACCAATGAGCGGAAGGAGATTGTCCAAAGCTGTACACACTCCATGATGTGCGTGCCAG...........................................................................................................................................................................................................GTGGATTTCATGCTGGAGTTACTGTAAATAGGGTTGGATAAAAAACATTTTTGCGAGAGTGATCTGCATTCCAGCCCCCTCTGAAGCACAGGAGTCAGCTGCATTTCAAATGATTACCCAATTACAGACTATGGCAGACCACACCCATTACATTTAATGATGGCAAAGAAACAGCAACACCAATATTTTTGAATCCTATTAATGGCTACCATACCATAGTACTGTATTAGTTTCATTACTTTCCAGAAGCATATATTATGTGTGTCTGTGAAACTGAATTTGTTGTCTTAGAATATTAGTTGGTTGCAACCCGTATCAGTGCTTTGAACGAAAATCAAGGCCAAATACATTCGGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330568" ref_strand="+" ref_description="SGN-U330568        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: hypothetical(evalue: 5e-05, score=50.8)">
      <seq>ttagttgcctctgtatcttcttttttttccttggtaaagatatttattaaaaatggtatcaagatggcacagaaaagactacatgacctaaactacaccactcgctccaaacatactacatattttcccctaataagtttaaaaaacccacttccatcacctccaacggaaagaggaattttatccatcaaagaaaaccaaaaatccagcaagtgtctagtaaatggagcaaagaaagagcatccccataacttaaccatcctatcaagagtacaactattagtacaaacatacaaattcttgatgcatttgtttctgactctgggtatctgcagcctccgtatctccttttagacccattttattccaagctgacgtgatgtgtagtggaagtttcctaacagattcaaccttttaggagattcatcatagctagatggttttcatgatgctgctctacctacctgtacatttcctttaatgcatgctttcaatgatgtcaaaactacagcaattgctccatcctaggtggggggggggggggggggggaccccaaaaaaggggccctttccctggctcccaattttttcttcttgggggggggggggggtttagaagggaaaggggaccaccggggtaaaaaccaaaatacaggggggaaaaattccctgggggggggctggattcttcacaaggggggaaaaaaaagttgggttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="54218" stop="53056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53918" g_stop="53221" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53220" i_stop="53125" i_length="96">
            <donor d_prob="0.527" d_score="0.64"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53124" g_stop="53096" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="726" r_length="29" r_score="0.724"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-U330568" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53918" e_stop="53221"/>
          <exon e_start="53124" e_stop="53096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTGCCTCTGTATCTTCTTTTTTTTCCTTGGTAAAGATATTTATTAAAAATGGTATCAAGATGGCACAGAAAAGACTACATGACCTAAACTACACCACTCGCTCCAAACATACTACATATTTTCCCCTAATAAGTTTAAAAAACCCACTTCCATCACCTCCAACGGAAAGAGGAATTTTATCCATCAAAGAAAACCAAAAATCCAGCAAGTGTCTAGTAAATGGAGCAAAGAAAGAGCATCCCCATAACTTAACCATCCTATCAAGAGTACAACTATTAGTACAAACATACAAATTCTTGATGCATTTGTTTCTGACTCTGGGTATCTGCAGCCTCCGTATCTCCTTTTAGACCCATTTTATTCCAAGCTGACGTGATGTGTAGTGGAAGTTTCCTAACAGATTCAACCTTTTAGGAGATTCATCATAGCTAGATGGTTTTCATGATGCTGCTCTACCTACCTGTACATTTCCTTTAATGCATGCTTTCAATGATGTCAAAACTACAGCAATTGCTCCATCCTAGGTGGGGGGGGGGGGGGGGGGGGAGCTCTAAAATGGTTTCCTTTCTCTTGCTTCCTATTCTTTCTTCTTTGTGTTGGTGGGTGGTTTAGGAGGTGAAGGGGAGCAGCGTGGTTGAGACCGAGACTATCAGGTGGCTAAGTTTCCTTGTGGTGGTCTTGATTCTTCATCAAGGTTTGGTAGTTTCTTGGAGTCTTGAACTGCTGTATCATGAACTTGAACTAAATTACTGTAGGCCAATGTGCTCATGTTTATTTTAATGCCTTGTAGGTGGCAAAGATAGTTTGGCTCTAAAAATA</genome_strand>
        <mrna_strand>TTAGTTGCCTCTGTATCTTCTTTTTTTTCCTTGGTAAAGATATTTATTAAAAATGGTATCAAGATGGCACAGAAAAGACTACATGACCTAAACTACACCACTCGCTCCAAACATACTACATATTTTCCCCTAATAAGTTTAAAAAACCCACTTCCATCACCTCCAACGGAAAGAGGAATTTTATCCATCAAAGAAAACCAAAAATCCAGCAAGTGTCTAGTAAATGGAGCAAAGAAAGAGCATCCCCATAACTTAACCATCCTATCAAGAGTACAACTATTAGTACAAACATACAAATTCTTGATGCATTTGTTTCTGACTCTGGGTATCTGCAGCCTCCGTATCTCCTTTTAGACCCATTTTATTCCAAGCTGACGTGATGTGTAGTGGAAGTTTCCTAACAGATTCAACCTTTTAGGAGATTCATCATAGCTAGATGGTTTTCATGATGCTGCTCTACCTACCTGTACATTTCCTTTAATGCATGCTTTCAATGATGTCAAAACTACAGCAATTGCTCCATCCTAGGTGGGGGGGGGGGGGGGGGGGGACCCCAAAAAAGGGGCCCTTTCCCTGGCTCCCAATTTTTTCTTCTTGGGGGGGGGGGGGGGTTTAGAAGGGAAAGGGGACCACCGGGGTAAAAACC-AAAATACAGGGGGGAAAAATTCCCTGGGGGGGGGCTGGATTCTTCACAAGG................................................................................................GGGGAAAAAAAAGTTGGGTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343936" ref_strand="+" ref_description="SGN-U343936        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaccacccttccagacctatgtgggattacactagatatgttgtatcctaattatccagcagcatttatctattgcaacgccaagttttgagttagatcctttgaattgattaggaggaacaaaactgagcaaatctttgtacatctgatgatcctgcctggacttggactacttgaggtgtaataaatttcagagaaaaaaaattgtactcttctgtgcaatgcagttgtaggacaattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="77434" stop="78277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77734" g_stop="77977" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-U343936" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77734" e_stop="77977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACCCTTTCCAGA-CTATGTGGGATTACACTAAGATATGTTGTATCCTAATTATCCAGCAGCATTTATCTATTGCAACGCCAAGTTTTGAGTTAGATCCTTTGAATTGATTAGGAGGAACAAAACTGAGCAAATCTTTGTACATCTGATGATCCTGCCTGGACTTGGACTACTTGAGGTGTAATAAATTTCAGAGAAAAAAAATTGTACTCTTCTGTGCAATGCAGTTGTAGGACAATTCAT</genome_strand>
        <mrna_strand>AACCACCC-TTCCAGACCTATGTGGGATTACACT-AGATATGTTGTATCCTAATTATCCAGCAGCATTTATCTATTGCAACGCCAAGTTTTGAGTTAGATCCTTTGAATTGATTAGGAGGAACAAAACTGAGCAAATCTTTGTACATCTGATGATCCTGCCTGGACTTGGACTACTTGAGGTGTAATAAATTTCAGAGAAAAAAAATTGTACTCTTCTGTGCAATGCAGTTGTAGGACAATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332850" ref_strand="+" ref_description="SGN-U332850        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | methylase family protein, contains TIGRfam TIGR00536: modification methylase, HemK family | chr5:25686057-25688444 REVERSE | Aliases: MHJ24.13, MHJ24_13(evalue: 5e-91, score=330) genbank/nr: gi|15237618|ref|NP_201220.1| expressed protein [Arabidopsis thaliana] gi|10176963|dbj|BAB10283.1| gene_id:MHJ24.13~similar to unknown protein~sp|P74003 [Arabidopsis thaliana] gi|15451004|gb|AAK96773.1| Unknown protein [Arabidopsis thaliana] gi|30725624|gb|AAP37834.1| At5g64156 [Arabidopsis thaliana](evalue: 4e-89, score=330)">
      <seq>aatgaagttgagcttcattcgaccaatttcatgttgctctgtttcatctccagcaacctcagtgaaacctcaaaaacctatatttttaaggccacccaccttcaaaacaaccatatcagaccttcaaaaatggcatcattgggctaaatccctaatttcttctgtgggttccactttcttggaactggacaatggtccagactccgaattgttgctcagggagctaaattggcttgttgaagatgcaattgaaacaccaaaatctttcttgcaacaaccccacaaaaattacaatgataatagctcagttgcagttcgggcgtctttggaacaactgtatatgttgtggaaacgaagggtagaagaaagaatgccatttcagtatgtggttggctgtgaacattggagggatttggttttgagtgttcaagaaggggttttgattccaaggccagagactgagctgattgtggaccttgtcgatgatgctattaaggagaatggggaattgagggaaggattgtgggctgatttggggactggaagtggtgcacttgctattgggattgcaaggattttgggtacttctggtagagttgttgctactgatttaagccctgttgctactgcagttgcatcttataatgtgcagaggtatgatttggaggaaaaagtgcatgtaaagcaaggatcttggtttgaacctttgagagataatgaaggagaatttgtgggactggtcagtaatccaccatatattccaagcaaagatattggtggactacaagctgaagttggcagacatgaacctagactggcgttagacggtggagcaagtggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="81070" stop="78947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80770" g_stop="80104" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80103" i_stop="79422" i_length="682">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79421" g_stop="79247" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="842" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-U332850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80770" e_stop="80104"/>
          <exon e_start="79421" e_stop="79247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAAGTTGAGCTTCATTCGACCAATTTCATGTTGCTCTGTTTCATCTCCAGCAACCTCAGTGAAACCTCAAAAACCTATATTTTTAAGGCCACCCACCTTCAAAACAACCATATCAGACCTTCAAAAATGGCATCATTGGGCTAAATCCCTAATTTCTTCTGTGGGTTCCACTTTCTTGGAACTGGACAATGGTCCAGACTCCGAATTGTTGCTCAGGGAGCTAAATTGGCTTGTTGAAGATGCAATTGAAACACCAAAATCTTTCTTGCAACAACCCCACAAAAATTACAATGATAATAGCTCAGTTGCAGTTCGGGCGTCTTTGGAACAACTGTATATGTTGTGGAAACGAAGGGTAGAAGAAAGAATGCCATTTCAGTATGTGGTTGGCTGTGAACATTGGAGGGATTTGGTTTTGAGTGTTCAAGAAGGGGTTTTGATTCCAAGGCCAGAGACTGAGCTGATTGTGGACCTTGTCGATGATGCTATTAAGGAGAATGGGGAATTGAGGGAAGGATTGTGGGCTGATTTGGGGACTGGAAGTGGTGCACTTGCTATTGGGATTGCAAGGATTTTGGGTACTTCTGGTAGAGTTGTTGCTACTGATTTAAGCCCTGTTGCTACTGCAGTTGCATCTTATAATGTGCAGAGGTATGATTTGGAGGTTAGTATATTTTGCAATTTGCTTGTTGCTCCTAGTATGGTTTGAAATGAGCTTAAATGAAAGCAGGATTATATAGTCGACCCCAACTTGTTTGGGACCGAGGCGTAGTTGTTGCTCTTAGTATGGTTTAAATGAGCCTTAAATGAAGGCAGGGATTCATATATTGGACCCCAACTTGTTTTGGACTGAGGCGTAGTTGTTGTTGCTCTTAGTATGGTTTGAAATGAGCTTAAATGAAAACGGGGATTCATATAGCTGACCCCAACTTGTTTGGGACTGAGGCATGGTCGTTACTTGTTGCTCTTAGTATGGTTTGATGAGCTTAAAAGAAGGCAGTGATTCATAGAGCTGAACCCAACTTGTTTGGGACTGAGGCATAGTTGTGGTTACTTGTTGCCCTTAGTAAGGTTCCTCTTTGAGATTTTACTTCTGTGTCACTGTATTTTCATAGTTGATTGTCTCAAGCTAGTTGATCTTTAAAGCTAACTGCTATAGTTGTAGAATTGACTAGTTTAGCAAAAGCTTTGATTCTTAAATATTTTTGGCTGAAGAAAAATGGGAACTTGATCAGAAATCAGAATTTTATACATTGTTATAGAATTAGTGAAATAGAGTTTAATCATTGATTAAACTTTCAGGGCTGCAAATTTTGAATAGAGCATTGTCTTGAATTTTGTGCTAGGAAAAAGTGCATGTAAAGCAAGGATCTTGGTTTGAACCTTTGAGAGATAATGAAGGAGAATTTGTGGGACTGGTCAGTAATCCACCATATATTCCAAGCAAAGATATTGGTGGACTACAAGCTGAAGTTGGCAGACATGAACCTAGACTGGCGTTAGACGGTGGAGCAAGTGGTA</genome_strand>
        <mrna_strand>AATGAAGTTGAGCTTCATTCGACCAATTTCATGTTGCTCTGTTTCATCTCCAGCAACCTCAGTGAAACCTCAAAAACCTATATTTTTAAGGCCACCCACCTTCAAAACAACCATATCAGACCTTCAAAAATGGCATCATTGGGCTAAATCCCTAATTTCTTCTGTGGGTTCCACTTTCTTGGAACTGGACAATGGTCCAGACTCCGAATTGTTGCTCAGGGAGCTAAATTGGCTTGTTGAAGATGCAATTGAAACACCAAAATCTTTCTTGCAACAACCCCACAAAAATTACAATGATAATAGCTCAGTTGCAGTTCGGGCGTCTTTGGAACAACTGTATATGTTGTGGAAACGAAGGGTAGAAGAAAGAATGCCATTTCAGTATGTGGTTGGCTGTGAACATTGGAGGGATTTGGTTTTGAGTGTTCAAGAAGGGGTTTTGATTCCAAGGCCAGAGACTGAGCTGATTGTGGACCTTGTCGATGATGCTATTAAGGAGAATGGGGAATTGAGGGAAGGATTGTGGGCTGATTTGGGGACTGGAAGTGGTGCACTTGCTATTGGGATTGCAAGGATTTTGGGTACTTCTGGTAGAGTTGTTGCTACTGATTTAAGCCCTGTTGCTACTGCAGTTGCATCTTATAATGTGCAGAGGTATGATTTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGTGCATGTAAAGCAAGGATCTTGGTTTGAACCTTTGAGAGATAATGAAGGAGAATTTGTGGGACTGGTCAGTAATCCACCATATATTCCAAGCAAAGATATTGGTGGACTACAAGCTGAAGTTGGCAGACATGAACCTAGACTGGCGTTAGACGGTGGAGCAAGTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334972" ref_strand="+" ref_description="SGN-U334972        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: EMB2024 | glucosamine/galactosamine-6-phosphate isomerase family protein, low similarity to SP:O95336 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) {Homo sapiens}; contains Pfam profile PF01182: Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase | chr5:8330318-8331840 REVERSE | Aliases: K16H17.11, K16H17_11, EMB2024, EMBRYO DEFECTIVE 2024(evalue: 7e-46, score=181) genbank/nr: gi|21554291|gb|AAM63366.1| 6-phosphogluconolactonase-like protein [Arabidopsis thaliana](evalue: 1e-44, score=182)">
      <seq>ccgctactcctgctcagttctggccagtgatcagtgctcgctcccgagttacccctgttaagagtgcaccacctggacttagcctcctcttcttccgctctctctgctaacttgcgcatctcacctacccgattgtctcctctccgacgatctcttgcattgacctctccgtccgttgctggaaagccacttttctgctcccacccgcatcagaggaactcagtgttgagtacaaatttctcgagatctcagttcagaaccaaatcatcaatggctgagacagtgtctggggaaagtaaagcggaagtgaaagtgtaccgattccgatgaggaacttgctgtggctctagcgaagtacactgctgatttatcggagaaattttgtaaggagagagatgtttttactgtggttgtttccggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattgattcaatagactggtccaaatggcacgttttctgggtggatgagagagtggttccaaaggatcatcctgacagcaattatttgcttgcttatgatggttttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="80713" stop="83957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81013" g_stop="81073" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81074" i_stop="83075" i_length="2002">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.782" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83076" g_stop="83454" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="444" r_length="382" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83528" g_stop="83657" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="574" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-U334972" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81013" e_stop="81073"/>
          <exon e_start="83076" e_stop="83454"/>
          <exon e_start="83528" e_stop="83657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTACTCCTGCTCAGTTCTGGCCAGTGATCAGTGCTCGCTCCCGAGTTA-CGCTGTTAAGGTCAGCGTCCCAACTCTCATCTGAAAATATTTATTTTCATGGTAATTTGATAATGGAATCTGACGCTATAAACAATTTTTCAATGACTTGGTTGGAAGGTTGTTTTTTAAGACTTATAATTTGCTAATTAGAGGCTACTTCTCCTGTAACTTGTAAGCTTTGAGGAAGAATTTAGTGACGTCTACATTTGTAACATTCCTCTGTAGTATTAATCATGTATCTTACTTATTCTTCGAATGTTCATATGAAGCTACGAAGTTGCTATGCACATATATTATAGTACATGAAAAATGATCCTCCAACTGCACTTAAGAAAAGGAAAGAAAGGGCCGTGTTTTTGTAATGAATATGTGCATAGAGTCAAAGGATGAATGTATCTGATTCTAAGTTGTCTGCTACTGTGAATGGGCGTGATTGTGAAGTAGTTAGCCAAGTTTGGTTGCCACATTGGATTTTCCACTAGCCAAGTTTGGGTTTTGCTCAAGAATGCTTGCTTTGCAAAAGAAAATAAACTGTTAGCTTAGCTTGTTTGGTGTTAAAACTATAATAATGCCTTTTTTTTTTTTTGGTTCCTTGTATCTGTTAAAAAAAGGGAGATGTACTTAAAACATAAAAAAGTGAGCAAAAGTGATTGAATTTTGAAAATGTACCCTATTTATTAAATTTGGTTAAACCGAAAATCGAACCAAAATAAACCAAACCGAAATTGTAATAACCGAACCGAACTTATTTCAGTTTGGTTTGGTTTCACATTTTTGCCAAACTGAAAATAAAATAACCGAACTGACCGAACGCCCACTCCTAACCCTCGATTATTAATGATGAAACAATAGTTTATTTGGAGAAATCAAAGAAGAAGACTAGGAAACTGCCAAGTGGAGATGTGCACTAGTGGCTTATGTGATGGAAGACCTCCCAGGGTATAACTTCGTGAACAAATATATCAGTAAGAACGGGGAAACATTGCTCAACCTGATCTATATCGGTATGAAGATGGGTACTATATTATCAAATTTCCAAACATGGAGAATATGCAGGAGGTATTGTATACTAGACCTCATACTATAAATAAAAGGTTATTTTAAACAATGATCTGCTGATTTTACTTTCACTAAGGAGTATACTTAAATACCACATGGTTTAATTTTCCCAATTTGCCTATGAACTGCTGGAGTTGCAACTCTTTCAGACGCATTGCTAGTGCTATTGGAAAACCTATATATGTTGATGAGTGTACCACCAAACAAACTAGAATATCATATGCAAGGACGTTGATTGAGACAAATTTAACCAAACCTCTCTCAGAGGAAATTACAGTGCATGAGCCTAATGGAAGACAGTGTGTACAAAAAGTATGGTTTGATTGGAAGCCCAGTTCTGCAATTCTTGCTTGAAAATAGGTCATGACTGTTACACCTATCCTCAAATGAGACAATATTATGAAGATGTACCTCAGATTGTAAAGTCATAATTTTAGCAACCAAAAAGAAGGAAAGGCCTCAGAAATTGGTACAAAAATGGCAACCAAGAGGTCAACCAGTGGAGGTAACAGAGCCATTACCTAGTGTAGTACCTAGAAACTCAACTAGAATTATAAACAATGGGACTATAGCAAAAGAGACTACATCGGGAAGTCATAAATCAATCTATTCATCCTCAAAGGGGAGTTCTCTTAAGGTAAAACATGAAGATAAATGGAAAGGTATAAAATCATTTTTAAAATTATATATATGATGTCGGGTTGGTTTGTTCTTGGTTTGACATTTTAAAGTTAAACCGACCCAACGCAAAACGGTCAATTTTTTTTCTTCAATACCAAGCCAAGTCAAACCAAATTGCTAATGGTTTTCTTTTCTCGATTTACGAATTGGTGCAGTGTTCGATTCAATTTTGTTCACCCCTTGCTGTGACAACATCAAGAAAATATATACCATGCAATAATATTTTTTTTCATCGGAAACTTACACTAATACATTTATAATATAGTTTTATTACATGGCAGAGTGCA-CA-CTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTA-CGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTA</genome_strand>
        <mrna_strand>CCGCTACTCCTGCTCAGTTCTGGCCAGTGATCAGTGCTCGCTCCCGAGTTACCCCTGTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCACCACCTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACCGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315098" ref_strand="+" ref_description="SGN-U315098        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: EMB2024 | glucosamine/galactosamine-6-phosphate isomerase family protein, low similarity to SP:O95336 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) {Homo sapiens}; contains Pfam profile PF01182: Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase | chr5:8330318-8331840 REVERSE | Aliases: K16H17.11, K16H17_11, EMB2024, EMBRYO DEFECTIVE 2024(evalue: 3e-103, score=372) genbank/nr: gi|21554291|gb|AAM63366.1| 6-phosphogluconolactonase-like protein [Arabidopsis thaliana](evalue: 7e-102, score=374)">
      <seq>ttacactaatccatttataatatagttttattacatggcagagtgcacactggacttagcctcctcttcttccgctctctctgctaacttgcgcatctcacctacccgattgtctcctctccgacgatctcttgcattgacctctccgtccgttgctggaaagccacttttctgctcccacccgcatcagaggaactcagtgttgagtacaaatttctcgagatctcagttcagaaccaaatcatcaatggctgagacagtgtctggggaaagtaaagcggaagtgaaagtgtacgattccgatgaggaacttgctgtggctctagcgaagtacactgctgatttatcggagaaattttgtaaggagagagatgtttttactgtggttgtttccggtggttcacttatcaagtctctcaggaaattggtggagccaccatatattgattcaatagactggtccaaatggcacgttttctgggtggatgagagagtggttccaaaggatcatcctgacagcaattatttgcttgcttatgatggttttctatccaagatacctattcctgctggtaatgtgcatgccataaatgatgcattatcagcagaggctgcggcagatgattacgagacttgtctaaggcacttagtcaagagcaagatacttgacatctctgaagagagtgggtttccaaaatttgatgtaatgctattgggtatgggtccagacggacatgtagcttccttgtttcccgggcatcctcttgtccatgagaaagcgaagtgggtcaccttcatcaaggattctccaaaacctccaccgaacaggattacatttacattccctgtaataaactcatctgcaaatattgcacttgctatagtaggtgctggtaaggcagatgtagtgcataaatcgctaggtgatgataaaagttctgatttgctgcctgtgcagatggtttcacctgaaggagaattagtttggtttttagacaaggatgcagcttcgaagctgtaaggatgaggatatgtgagctgcgtatttgtgcttcactcctctgtgtattttattattctaataatacattctgaagaagggttgtctgtaaaatgttatgccatttttttctcacttgtttctgtaaggatccttgactatgaggaacttggtactaaaactacagtttattctcctattactatattttatctatacaagttaggcatgtgtacagattgtttgcttcagcaataacacaagtgacagctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="82735" stop="86356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83035" g_stop="83454" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83528" g_stop="83663" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="556" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85332" g_stop="86047" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="1272" r_length="716" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1273" polyA_stop="1293"/>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-U315098" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1272</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83035" e_stop="83454"/>
          <exon e_start="83528" e_stop="83663"/>
          <exon e_start="85332" e_stop="86047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACTAATACATTTATAATATAGTTTTATTACATGGCAGAGTGCACACTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAGGTATGATTGATTAATTCTCTTTGTTTCTTCTATGAATTGGGGAATTTTTTTGGGTTGCTAATGTTTATTGCAGGAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAGGTATATTTGCAGCCCTTCCTACAACATATTGATTTTATTTACTGCTGCCACAGTGTGTACTGTGTAGTTTCTTCATTAGCTTTCTACCCATTATATTTCACCTCTCCTCTGTGTATTTGTTGTTTTACCCCAACTTTTCTGATCTTTTGCTTGTTTGCCCAGTCAAAATGTGGGACGCAGTAGGTTTCTTGTACTAGTGATTTCTTCTCATCTGTTCAGTTAGATACCCCAAAGTACTAGTAGACATGCCCAGACAGCAGGTTATAAAAAAAAGTTAATCTTTTAAGTTTATCTTTTTTTTCTAGTTACGAGCAATGCTGATGGTCTCAATCTCCTTAACAAATAAGTTATAGGGGGTGGGGGGATGTGAACAGAGATTAAAGTGCACAGTATTGATGGAGAATACATCTAGAGGTATTCAGATTCTCATTCAACTCTGGATGAAATATTTGGGAAAATCAATTGAGAAAGTAATTATGTGAGGGCGTTAGGGCAGCGGTAACAAGGAATGCAAGTCATGCATACTATAAACATATCTTTTTCCGCAGTCCTTGAGATTAAGAAGTTAAGTAAGATAAGCCTGCTAATATATGGACGGAAGAAACAATCTCTACCTATATATATATATACATATTTGGGGGTGGTTTGGTTATATGTGACAAAGTCAAGCAATCTGTTTACATGATCATATCTATCATGGACCCAACTGTGCGAAGAAGCTGTATGTTAAATAAGTTTTAGATTACATTTTCTTAAGATATGTGATGATGTTACGCAATTCATGTAAAAACAAGAAACTAAAAAGAAAATCTTTGCACTGTATTGGAATAAACAGCTTCAAATTCACTTTTTTTTTTAGAAAACATTAAATTTTGCTTTGGTTAACAAAATTCTGATATAAAATTACTTCTTATAGAATCTGTCAGCCCCTGAAGCCCTCCTTAAACAACAACTGAGGTCCTTCTATTATTTTGTGTGTGTGGGGGGGGGGGGGGGGGTTATATTAAAATGATGGAGCATTAGCAAAATACTTCAAACATTTACCATGGTAGAGATTACTTAATGAGAAAGGATTTGGAAATTTTTGGGGCTAGAAGAGTTAAGCGGGGTTGAGGTTTAGAGGATCAACTGAAAAGTAATTATAACTTAAGCACAATTGTCAATTGAGCATGTTGGGAAACTTAAAGAGCAAAGAGTGTCCAACTCAATACCATGTGGAGCTGCCGATAAGATCAGTTGGACATTTTATGTTGACTTCGGTGAATTCCTTTTAATATAAGGATGAATAAGTGGGTTTGAATTACACCCTCAATGTTAACCTACTTACTTTCAGTTAAGTCTCTTCATTATCTCTAACAAGTTGGGTTGCCTTTACTTCTTGATTCTTACTTGGCAGTCTGACCAGCTCTTAAGCACAGACTATTTAAATAAAGATGGTTGTGAACTAAATTTATCCAATTTGTATCAGAAAAGATGTTTAGTGATGCATAGCTGCAAGGGCATCTTTTTGGATTTCAAATTGCTCATAGTACTGGCTTCACATGTGAACTGCCTACATTGTTTGATCTTATTATGAATGATGATAATTCTTACTTCATCATTATTCTCAGTTGACATCTTTAATTCTTTCTACCAAACTTCTAACCTCATCTTTACTTCTCTTGGCAGATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGATGGTTTCACCTGAAGGAGAATTAGTTTGGTTTTTAGACAAGGATGCAGCTTCGAAGCTGTAAGGATGAGGATATGTGAGCTGCGTATTTGTGCTTCACTCCTCTGTGTATTTTATTATTCTAATAATACATTCTGAAGAAGGGTTGTCTGTAAAATGTTATGCCATTTTTTTCTCACTTGTTTCTGTAAGGATCCTTGACTATGAGGAACTTGGTACTAAAACTACAGTTTATTCTCCTATTACTATATTTTATCTATACAAGTTAGGCATGTGTACAGATTGTTTGCTTCAGCAATAACACAAGTGACAGCT</genome_strand>
        <mrna_strand>TTACACTAATCCATTTATAATATAGTTTTATTACATGGCAGAGTGCACACTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG.........................................................................GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGATGGTTTCACCTGAAGGAGAATTAGTTTGGTTTTTAGACAAGGATGCAGCTTCGAAGCTGTAAGGATGAGGATATGTGAGCTGCGTATTTGTGCTTCACTCCTCTGTGTATTTTATTATTCTAATAATACATTCTGAAGAAGGGTTGTCTGTAAAATGTTATGCCATTTTTTTCTCACTTGTTTCTGTAAGGATCCTTGACTATGAGGAACTTGGTACTAAAACTACAGTTTATTCTCCTATTACTATATTTTATCTATACAAGTTAGGCATGTGTACAGATTGTTTGCTTCAGCAATAACACAAGTGACAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321429" ref_strand="+" ref_description="SGN-U321429        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT1G16220.1 | Symbol: None | protein phosphatase 2C family protein / PP2C family protein, similar to protein phosphatase-2C; PP2C (GI:3643088) (Mesembryanthemum crystallinum); contains Pfam PF00481 : Protein phosphatase 2C domain; | chr1:5548647-5550547 FORWARD | Aliases: F3O9.3, F3O9_3 (evalue: 2e-148, score=412) genbank/nr: gi|50947319|ref|XP_483187.1| putative protein phosphatase 2C [Oryza sativa (japonica cultivar-group)] >gi|42407353|dbj|BAD08814.1| putative protein phosphatase 2C [Oryza sativa (japonica cultivar-group)] (evalue: 7e-145, score=419)">
      <seq>tttcttttattatatctgaatgaatctctctatcactttctgccattatttttgcttgtaatctttagggttttcagcttcaatcttttggatccagcaatttgcttgtttcaatttctctttgtttcagtattgaattcttcgagtgttgtttcatttcttagtaatttcattttttttcttctttgagttgaatctcagtgaattcttgcaggagacatatttgtttaattattctgaggtgtttgataaatttcctcagagagagaacgcagatttttaagggggaatgggaatttgttactcttcaagtaaaagcacgagcgatgatgggttgtgggatggtaagaatgacagcagaaggtttgattacaagttgaagaagaacagttatagtggcgatttcagctcatttttaagcaagttaagtggtgttggtggaggagggggtgaggacaaggggctgcatcatattcccggaaggattttggggaatggagccacctcccgtgcttgcctacacactcagcaagggaaaaaaggaacgaatcaagatgccatgatcatttgggagaatttttgctcgcgaagtgatacgatcttttgcggagtatttgatggacacggtccctatggccatatggtggcaaggaaagttcgagatactcttccgtttctcctgtgttcagagtggcaagttaaatccggtggtgatcaaagtaatacttctgagacaggaaataccaacggaggttcgcatcattgatgatgacttggatgatgatttgattgaagctatggaagctgagaacaatgaaaagttcccagaaatacatcttccccttaaaagatcaatgttaaaagctttccggtcgatggataaagaactcaagttgcacccttctattgattgtttctgtagtggatcaactgctgtttccttggtgatgcagggccaggatataattgttggcaatgttggtgactcaagagcagtattggcaactagagataaagacaactatttaatggctgtacagttgacagtagatttgaagcctaatcttccaagagaagctgctagaatacataaatacaaaggcagggtttttgcattgcaagatgagccagaggttgcgcgtgtatggttgccgaacagtgactctcctggcttggcaatggccagagcatttggtgatttttgtctcaaggattttgggttaatttctgtccctgatgtgtattaccaccgcataactgataggaacgaatttgttgttctagcaactgatggggtttgggatgtactttctaataaggaagccgtggatattgtggcctccgcaccaagtcgcgcaacagctgcccgagctcttgttgactgtgcgacaagagcttggaggctgaagtacccgacatcaaaaactgatgattgtgctgtagtatgccttttcctggaccgtgtacctgcacctgattctgtagtcacagcgaggcaacatgatttgacaaaggctcctgaagtggaaataaagacgattattactgatggcaaccttgaaagtgcagatagtaatgctactcatattgcagttcgtgaacattcagttactacaatagacgccagtgagatagttcctgttgacgaatcaatagaagaacagctagcggataagggtcttggacattctaagagaagcctagccgagtgcctttcaactgcagaagatcaggaatggtcagccctcgagggagtaaccagggttaatagccttcttagtcttcctagatttatgtctggtgacaaaaaatcagccagtcggaggaaatggttgtaagacatcaaggcatgatacctcaagggccaaggctaatgtaagtgctttgtattagctgttcttctcaaagattctgtaaatcaaaacactgtagcagcagtagtagtataaaagactaagtgctggatcattgcctggaatgtaaaacagcctgtgcttgatgactatccaaattggcaatgctttttggtagaatatttatgattgatgagaacaacgcgaggcctcagacagaaatagtaacattttcttgtgctgtgtagtattttactttcatgtccaagatggaatcccctctggtgcatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="+" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="87978" stop="92720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88278" g_stop="88851" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88852" i_stop="89755" i_length="904">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89756" g_stop="90133" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="953" r_length="379" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90134" i_stop="90945" i_length="812">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90946" g_stop="91063" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="954" r_stop="1071" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91064" i_stop="91182" i_length="119">
            <donor d_prob="0.067" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91183" g_stop="91406" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1072" r_stop="1295" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91407" i_stop="91568" i_length="162">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91569" g_stop="92420" g_length="852"/>
          <reference_exon_boundary r_type="cDNA" r_start="1296" r_stop="2147" r_length="852" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="+" ref_id="SGN-U321429" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2146</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88278" e_stop="88851"/>
          <exon e_start="89756" e_stop="90133"/>
          <exon e_start="90946" e_stop="91063"/>
          <exon e_start="91183" e_stop="91406"/>
          <exon e_start="91569" e_stop="92420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTATTATATCTGAATGAATCTCTCTATCACTTTCTGCCATTATTTTTGCTTGTAATCTTTAGGGTTTTCAGCTTCAATCTTTTGGATCCAGCAATTTGCTTGTTTCAATTTCTCTTTGTTTCAGTATTGAATTCTTCGAGTGTTGTTTCATTTCTTAGTAATTTCATTTTTTTTCTTCTTTGAGTTGAATCTCAGTGAATTCTTGCAGGAGACATATTTGTTTAATTATTCTGAGGTGTTTGATAAATTTCCTCAGAGAGAGAACGCAGATTTTTAAGGGGGAATGGGAATTTGTTACTCTTCAAGTAAAAGCAAGAGCGATGATGGGTTGTGGGATGGTAAGAATGACAGCAGAAGGTTTGATTACAAGTTGAAGAAGAACAGTTATAGTGGCGATTTCAGCTCATTTTTAAGCAAGTTAAGTGGTGTTGGTGGAGGAGGGGGTGAGGACAAGGGGCTGCATCATATTCCCGGAAGGATTTTGGGGAATGGAGCCACCTCCCGTGCTTGCCTACACACTCAGCAAGGGAAAAAAGGAACGAATCAAGATGCCATGATCATTTGGGAGGTCCTCAATTCTCTGTTTCTTCAATTATTTTTTTGTGTTTTTCTGCTTATGTCACGAGCTACCAAATCATCAATCTTTTTGTGCGTATGGGAGCTTAAATTTCTAAAAATTGAACCTTCTCATTATCTGTGAATAGCTGGTTCCATGAAGAGGGTTGTCGATAGGTTGATGGCGGGTCTGCAATGAATCATCTCAATCTTGTGTTTTCTCTGCGTTGAATGCCTCTATGTTGTATAAGTAACCAAATCCTCAATTATTTTGTGCTTATATAGGAGCTTAGATATCTAAAAATTGAACCTTTTAATTATCTATCACATAGGCGGTTCCAAGGCCCGACAAAAGAGGGGGGTTGTAGTGGATTGATGTCCTGTGTGCAAGTTGGATTATGAATCATCCGAATTTTGTGTTTTCTTCCTTTTGGTTTTCTTTGCATTGAATGTCTCTTATGTCAAATGAGTAACCAAATCCTCAATCATTTTGTGCATGTAGGAGCATTGATATCTAAAAATTGAACCTTTTAATTCTCTATCACATAGCCAGTTCTGCGGACTGGTAAATGAGGAGGGTTTGTGGTAGGTTGATGGCCGGTATAAGTTTAGTTATTAATCATGTAAGGTTTGAGTGTGTAGAATGATGTCTACTTATGCATAGAAGTCATATATATGATCCTTTCAACCATCAATTATGGTAGATGGACTGTCAAAATAACCTACGTAGCTCTTGTTTCTGAAGCTTCCTTCACCCAATTAACTATTCCAGTTTTGCATCAAAATTTTTGAGTCCTATGGAAGTGTAGTTATTGTATACTTAAATTTCATTAAGTCCATTACTTGTCAAAACAAAGAGTTAATTTGTTCTTATCTATTGGGTCAGTTTATGACTTGGTTGGAATTTTCTACAATAGAATTTTTGCTCGCGAAGTGATACGATCTTTTGCGGAGTATTTGATGGACACGGTCCCTATGGCCATATGGTGGCAAGGAAAGTTCGAGATACTCTTCCGTTTCTCCTGTGTTCAGAGTGGCAAGTTAAATCCGGTGGTGATCAAAGTAATACTTCTGAGACAGGAAATACCAACGGAGGTTCACATC-TTGATGATGTCTTGGATGATGATTTGATTGAAGCTATGGAAGCTGAGAACAATGAAAAGTTCCCAGAAATACATCTTCCCCTTAAAAGATCAATGTTAAAAGCTTTCCGGTCGATGGATAAAGAACTCAAGTTGCACCCTTCTATTGATTGTTTCTGTAGTGGATCAACTGCTGTTTCCTTGGTGATGCAGGTAATAATTTAGCTAATTTTTTTTTGTATAAACGAGGTTTATTTTCCTAAATCCTAATGTTTCAGAAAAAAAAAATTTGGGTACTTACTGATAATTTTTTTTTAATTAATATTTGGGTGCTTATAAATGGGTAATACTGTAATTATAGTAGCAAATTAGTGAGCTACTTTTTCTTATAGCCAATAAGTTCCCAAGGACCAGTGATGCAGGGTCCGAGTACATGACATGCGCCTAACACAAAACATCACACGCCACATGCTTACCCCTAGATCAAATCCCCGGAGGCAATAAATGAGCTATTTTTGAATTGCCAGTCATTGGCTAGTCATTGTCTTTGCTTTTGAAGGATTATCACTTTTGATGTCCTTGACTACTACATGGGTTACATCAAACATGAAAACCTGATACAGTTCATTTATGTATTGTATAAAATCCATTCAAATAATAAAATTTTGTGCATCCGAGTTCTCTACTGACTGCCCTCTCAATCTACTGGATGTTTTGTAATAAATTTGTCTTCTTCTGGTAGTTAACTCAATTTAGCAAGTTATCTTCTTGTTCTAAAATATTTTATTTAATAGTTAGACTTAAAACAGTTCCCTTAGTACTTCTCACTTGACTGGTACATGATCTTGAAGCATACTAGTTGACTTACCAAAAAAAAGGGAAAGAAACATACTAGTTGTAGAAAATAATCAAGTCTGAGTGGGAGGGGTTTAATATGAGTCTGCCACATATTTGGTTATTCTAGCTCTTTTATAATTTCTTAGCATTCCACAAGCATTTTAACTGATCTTTTTGTGGTGTCTCAGGGCCAGGATATAATTGTTGGCAATGTTGGTGACTCAAGAGCAGTATTGGCAACTAGAGATAAAGACAACTATTTAATGGCTGTACAGTTGACAGTAGATTTGAAGCCTAATCTTCCAAGTCTCTCTCTCTCTTCTTGATTCTATACATTACACCGAGAAGCTACAATGTAATTGTCTCTTTTTTTTTTTTTTGAAGAAAGTGTTTAAATTTATTTTTTCAATTGTTTTGTCTTGTAGGAGAAGCTGCTAGAATACATAAATACAAAGGCAGGGTTTTTGCATTGCAAGATGAGCCAGAGGTTGCGCGTGTATGGTTGCCGAACAGTGACTCTCCTGGCTTGGCAATGGCCAGAGCATTTGGTGATTTTTGTCTCAAGGATTTTGGGTTAATTTCTGTCCCTGATGTGTATTACCACCGCATAACTGATAGGAACGAATTTGTTGTTCTAGCAACTGATGGGGTACTTATTTCACCAAACATTATTTCACTACAAAAAGAAAATTCTATATCATCTCTACGTAAACAGAGTCTAAATTTCACCTTCTTTCTGACTTGGCTTAATCTGTTTCCATTTGTCAATACTTAGATTTGTCTCATGATGTAATTTCTTCGTTCTTTGTAGGTTTGGGATGTACTTTCTAATAAGGAAGCCGTGGATATTGTGGCCTCCGCACCAAGTCGCGCAACAGCTGCCCGAGCTCTTGTTGACTGTGCGACAAGAGCTTGGAGGCTGAAGTACCCGACATCAAAAACTGATGATTGTGCTGTAGTATGCCTTTTCCTGGACCGTGTACCTGCACCTGATTCTGTAGTCACAGCGAGGCAACATGATTTGACAAAGGCTCCTGAAGTGGAAATAAAGACGATTATTACTGATGGCAACCTTGAAAGTGCAGATAGTAATGCTACTCATATTGCAGTTCGTGAACATTCAGTTACTACAATAGACGCCAGTGAGATAGTTCCTGTTGACGAATCAATAGAAGAACAGCTAGCGGATAAGGGTCTTGGACATTCTAAGAGAAGCCTAGCCGAGTGCCTTTCAACTGCAGAAGATCAGGAATGGTCAGCCCTCGAGGGAGTAACCAGGGTTAATAGCCTTCTTAGTCTTCCTAGATTTATGTCTGGTGACAAAAAATCAGCCAGTCGGAGGAAATGGTTGTAAGACATCAAGGCATGATACCTCAAGGGCCAAGGCTAATGTAAGTGCTTTGTATTAGCTGTTCTTCTCAAAGATTCTGTAAATCAAAACACTGTAGCAGCAGTAGTAGTATAAAAGACTAAGTGCTGGATCATTGCCTGGAATGTAAAACAGCCTGTGCTTGATGACTATCCAAATTGGCAATGCTTTTTGGTAGAATATTTATGATTGATGAGAACAACGCGAGGCCTCAGACAGAAATAGTAACATTTTCTTGTGCTGTGTAGTATTTTACTTTCATGTCCAAGATGGAATCCCCTCTGGTGCATGTTT</genome_strand>
        <mrna_strand>TTTCTTTTATTATATCTGAATGAATCTCTCTATCACTTTCTGCCATTATTTTTGCTTGTAATCTTTAGGGTTTTCAGCTTCAATCTTTTGGATCCAGCAATTTGCTTGTTTCAATTTCTCTTTGTTTCAGTATTGAATTCTTCGAGTGTTGTTTCATTTCTTAGTAATTTCATTTTTTTTCTTCTTTGAGTTGAATCTCAGTGAATTCTTGCAGGAGACATATTTGTTTAATTATTCTGAGGTGTTTGATAAATTTCCTCAGAGAGAGAACGCAGATTTTTAAGGGGGAATGGGAATTTGTTACTCTTCAAGTAAAAGCACGAGCGATGATGGGTTGTGGGATGGTAAGAATGACAGCAGAAGGTTTGATTACAAGTTGAAGAAGAACAGTTATAGTGGCGATTTCAGCTCATTTTTAAGCAAGTTAAGTGGTGTTGGTGGAGGAGGGGGTGAGGACAAGGGGCTGCATCATATTCCCGGAAGGATTTTGGGGAATGGAGCCACCTCCCGTGCTTGCCTACACACTCAGCAAGGGAAAAAAGGAACGAATCAAGATGCCATGATCATTTGGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTTGCTCGCGAAGTGATACGATCTTTTGCGGAGTATTTGATGGACACGGTCCCTATGGCCATATGGTGGCAAGGAAAGTTCGAGATACTCTTCCGTTTCTCCTGTGTTCAGAGTGGCAAGTTAAATCCGGTGGTGATCAAAGTAATACTTCTGAGACAGGAAATACCAACGGAGGTTCGCATCATTGATGATGACTTGGATGATGATTTGATTGAAGCTATGGAAGCTGAGAACAATGAAAAGTTCCCAGAAATACATCTTCCCCTTAAAAGATCAATGTTAAAAGCTTTCCGGTCGATGGATAAAGAACTCAAGTTGCACCCTTCTATTGATTGTTTCTGTAGTGGATCAACTGCTGTTTCCTTGGTGATGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGGATATAATTGTTGGCAATGTTGGTGACTCAAGAGCAGTATTGGCAACTAGAGATAAAGACAACTATTTAATGGCTGTACAGTTGACAGTAGATTTGAAGCCTAATCTTCCAA.......................................................................................................................GAGAAGCTGCTAGAATACATAAATACAAAGGCAGGGTTTTTGCATTGCAAGATGAGCCAGAGGTTGCGCGTGTATGGTTGCCGAACAGTGACTCTCCTGGCTTGGCAATGGCCAGAGCATTTGGTGATTTTTGTCTCAAGGATTTTGGGTTAATTTCTGTCCCTGATGTGTATTACCACCGCATAACTGATAGGAACGAATTTGTTGTTCTAGCAACTGATGGG..................................................................................................................................................................GTTTGGGATGTACTTTCTAATAAGGAAGCCGTGGATATTGTGGCCTCCGCACCAAGTCGCGCAACAGCTGCCCGAGCTCTTGTTGACTGTGCGACAAGAGCTTGGAGGCTGAAGTACCCGACATCAAAAACTGATGATTGTGCTGTAGTATGCCTTTTCCTGGACCGTGTACCTGCACCTGATTCTGTAGTCACAGCGAGGCAACATGATTTGACAAAGGCTCCTGAAGTGGAAATAAAGACGATTATTACTGATGGCAACCTTGAAAGTGCAGATAGTAATGCTACTCATATTGCAGTTCGTGAACATTCAGTTACTACAATAGACGCCAGTGAGATAGTTCCTGTTGACGAATCAATAGAAGAACAGCTAGCGGATAAGGGTCTTGGACATTCTAAGAGAAGCCTAGCCGAGTGCCTTTCAACTGCAGAAGATCAGGAATGGTCAGCCCTCGAGGGAGTAACCAGGGTTAATAGCCTTCTTAGTCTTCCTAGATTTATGTCTGGTGACAAAAAATCAGCCAGTCGGAGGAAATGGTTGTAAGACATCAAGGCATGATACCTCAAGGGCCAAGGCTAATGTAAGTGCTTTGTATTAGCTGTTCTTCTCAAAGATTCTGTAAATCAAAACACTGTAGCAGCAGTAGTAGTATAAAAGACTAAGTGCTGGATCATTGCCTGGAATGTAAAACAGCCTGTGCTTGATGACTATCCAAATTGGCAATGCTTTTTGGTAGAATATTTATGATTGATGAGAACAACGCGAGGCCTCAGACAGAAATAGTAACATTTTCTTGTGCTGTGTAGTATTTTACTTTCATGTCCAAGATGGAATCCCCTCTGGTGCATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345261" ref_strand="+" ref_description="SGN-U345261        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G55580.1 | Symbol: None | scarecrow transcription factor family protein, contains Pfam profile PF03514: GRAS family transcription factor | chr1:20767772-20769109 FORWARD | Aliases: F20N2.1 (evalue: 5e-108, score=388) genbank/nr: gi|13620224|emb|CAC36399.1| lateral suppressor [Lycopersicon esculentum] >gi|4160441|gb|AAD05242.1| lateral suppressor protein [Lycopersicon esculentum] (evalue: 0, score=750)">
      <seq>cctctgtccttccccccaggtcccctttttttcctttctctctctcctttatttctcttttcataagcatattctttctctctctagggttttcactttcacctgaaatagtgttgttaaattgaatgatatgttaggatcctttggttcttcatcatctcaatctcaccctcatcatgatgaagaatcttctgatcatcatcaacagcgtagattcaccgctactgctacaactatcaccaccaccaccatcactacctcaccagctattcaaatccgccagctactcattagctgtgcggagttgatttcgcagtccgatttctcggccgcgaaaagactccttactatattatcaactaactcatctccttttggtgattcaactgaacggttagtccatcaatttactcgcgcactttcccttcgtctcaaccgctatatatcgtcaaccaccaatcatttcatgacacctgttgaaacaactccaactgattcttcttcttcgtcatcattagctctaattcaatcatcatatctatctctaaaccaagttacccctttcataaggtttactcaattaaccgctaatcaagcgattttagaagcgattaacggtaatcatcaagcaatccacatcgttgatttcgacattaatcacggggttcaatggccaccgttaatgcaagcactagctgatcgttaccctgctcccactcttcgaatcaccggtactggaaatgaccttgatacccttcgtagaacaggtgatcgtttagctaaatttgctcactcattagggttgagatttcaattccatcctctttatatagccaataataaccacgatcacgatgaagatccttctattatttcctccattgtactactccctgatgaaaccctagctatcaactgtgttttctacctccaccgccttttaaaagaccgcgaaaagttaaggatttttttgcatagggttaagtcaatgaaccctaaaattgttacaatcgcggagaaggaagcaaatcataaccatcctctttttttacaaagattcatcgaggcgttggattattatacagctgtgtttgattcactggaagctacattgccaccgggtagtcgagagaggatgacagttgaacaagtgtggtttgggagagagattgttgatatcgttgcgatggaaggagataaaaggaaagaaagacatgaaaggtttagatcatgggaagttatgttgaggagttgtggatttagtaatgttgctttaagcccttttgcattatcacaagctaagcttcttttgagacttcattatccttctgaaggctatcaactcggagtttcgagtaattctttcttcttaggttggcaaaatcaaccccttttctccatctcgtcttggcgttgagaaaaactatcaaatagccaacttcagagggtaattaagactactgatagtttaggagggatctgaagaaaacgcgtggagtgaaaaccctaaataaccagattttctaatgaagttgtagtagtagaaatttgcatggtgaagaacaatattgaagaggtattgaaatttcatgttttttttgttttacttattgatatgaatgttttaaaatttttaacatagaggactaggttgatgatatatagtatttaagttaactagtctttgtataacgcaagatcttgatcaacttatttttatttttaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0179K09-UeNwu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0179K09.1" temp_strand="-" temp_description="C07HBa0179K09.1  htgs_phase:2 submitted_to_sgn_as:C07HBa0197K09,complete upload_account_name:france sequence">
        <position start="102115" stop="99787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101815" g_stop="100087" g_length="1729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1729" r_length="1729" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0179K09.1" gen_strand="-" ref_id="SGN-U345261" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0179K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101815" e_stop="100087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTCCTTCCCCCCAGGTCCCCTTTTTTTCCTTTCTCTCTCTCCTTTATTTCTCTTTTCATAAGCATATTCTTTCTCTCTCTAGGGTTTTCACTTTCACCTGAAATAGTGTTGTTAAATTGAATGATATGTTAGGATCCTTTGGTTCTTCATCATCTCAATCTCACCCTCATCATGATGAAGAATCTTCTGATCATCATCAACAGCGTAGATTCACCGCTACTGCTACAACTATCACCACCACCACCATCACTACCTCACCAGCTATTCAAATCCGCCAGCTACTCATTAGCTGTGCGGAGTTGATTTCGCAGTCCGATTTCTCGGCCGCGAAAAGACTCCTTACTATATTATCAACTAACTCATCTCCTTTTGGTGATTCAACTGAACGGTTAGTCCATCAATTTACTCGCGCACTTTCCCTTCGTCTCAACCGCTATATATCGTCAACCACCAATCATTTCATGACACCTGTTGAAACAACTCCAACTGATTCTTCTTCTTCGTCATCATTAGCTCTAATTCAATCATCATATCTATCTCTAAACCAAGTTACCCCTTTCATAAGGTTTACTCAATTAACCGCTAATCAAGCGATTTTAGAAGCGATTAACGGTAATCATCAAGCAATCCACATCGTTGATTTCGACATTAATCACGGGGTTCAATGGCCACCGTTAATGCAAGCACTAGCTGATCGTTACCCTGCTCCCACTCTTCGAATCACCGGTACTGGAAATGACCTTGATACCCTTCGTAGAACAGGTGATCGTTTAGCTAAATTTGCTCACTCATTAGGGTTGAGATTTCAATTCCATCCTCTTTATATAGCCAATAATAACCACGATCACGATGAAGATCCTTCTATTATTTCCTCCATTGTACTACTCCCTGATGAAACCCTAGCTATCAACTGTGTTTTCTACCTCCACCGCCTTTTAAAAGACCGCGAAAAGTTAAGGATTTTTTTGCATAGGGTTAAGTCAATGAACCCTAAAATTGTTACAATCGCGGAGAAGGAAGCAAATCATAACCATCCTCTTTTTTTACAAAGATTCATCGAGGCGTTGGATTATTATACAGCTGTGTTTGATTCACTGGAAGCTACATTGCCACCGGGTAGTCGAGAGAGGATGACAGTTGAACAAGTGTGGTTTGGGAGAGAGATTGTTGATATCGTTGCGATGGAAGGAGATAAAAGGAAAGAAAGACATGAAAGGTTTAGATCATGGGAAGTTATGTTGAGGAGTTGTGGATTTAGTAATGTTGCTTTAAGCCCTTTTGCATTATCACAAGCTAAGCTTCTTTTGAGACTTCATTATCCTTCTGAAGGCTATCAACTCGGAGTTTCGAGTAATTCTTTCTTCTTAGGTTGGCAAAATCAACCCCTTTTCTCCATCTCGTCTTGGCGTTGAGAAAAACTATCAAATAGCCAACTTCAGAGGGTAATTAAGACTACTGATAGTTTAGGAGGGATCTGAAGAAAACGCGTGGAGTGAAAACCCTAAATAACCAGATTTTCTAATGAAGTTGTAGTAGTAGAAATTTGCATGGTGAAGAACAATATTGAAGAGGTATTGAAATTTCATGTTTTTTTTGTTTTACTTATTGATATGAATGTTTTAAAATTTTTAACATAGAGGACTAGGTTGATGATATATAGTATTTAAGTTAACTAGTCTTTGTATAACGCAAGATCTTGATCAACTTATTTTTATTTTTAATTA</genome_strand>
        <mrna_strand>CCTCTGTCCTTCCCCCCAGGTCCCCTTTTTTTCCTTTCTCTCTCTCCTTTATTTCTCTTTTCATAAGCATATTCTTTCTCTCTCTAGGGTTTTCACTTTCACCTGAAATAGTGTTGTTAAATTGAATGATATGTTAGGATCCTTTGGTTCTTCATCATCTCAATCTCACCCTCATCATGATGAAGAATCTTCTGATCATCATCAACAGCGTAGATTCACCGCTACTGCTACAACTATCACCACCACCACCATCACTACCTCACCAGCTATTCAAATCCGCCAGCTACTCATTAGCTGTGCGGAGTTGATTTCGCAGTCCGATTTCTCGGCCGCGAAAAGACTCCTTACTATATTATCAACTAACTCATCTCCTTTTGGTGATTCAACTGAACGGTTAGTCCATCAATTTACTCGCGCACTTTCCCTTCGTCTCAACCGCTATATATCGTCAACCACCAATCATTTCATGACACCTGTTGAAACAACTCCAACTGATTCTTCTTCTTCGTCATCATTAGCTCTAATTCAATCATCATATCTATCTCTAAACCAAGTTACCCCTTTCATAAGGTTTACTCAATTAACCGCTAATCAAGCGATTTTAGAAGCGATTAACGGTAATCATCAAGCAATCCACATCGTTGATTTCGACATTAATCACGGGGTTCAATGGCCACCGTTAATGCAAGCACTAGCTGATCGTTACCCTGCTCCCACTCTTCGAATCACCGGTACTGGAAATGACCTTGATACCCTTCGTAGAACAGGTGATCGTTTAGCTAAATTTGCTCACTCATTAGGGTTGAGATTTCAATTCCATCCTCTTTATATAGCCAATAATAACCACGATCACGATGAAGATCCTTCTATTATTTCCTCCATTGTACTACTCCCTGATGAAACCCTAGCTATCAACTGTGTTTTCTACCTCCACCGCCTTTTAAAAGACCGCGAAAAGTTAAGGATTTTTTTGCATAGGGTTAAGTCAATGAACCCTAAAATTGTTACAATCGCGGAGAAGGAAGCAAATCATAACCATCCTCTTTTTTTACAAAGATTCATCGAGGCGTTGGATTATTATACAGCTGTGTTTGATTCACTGGAAGCTACATTGCCACCGGGTAGTCGAGAGAGGATGACAGTTGAACAAGTGTGGTTTGGGAGAGAGATTGTTGATATCGTTGCGATGGAAGGAGATAAAAGGAAAGAAAGACATGAAAGGTTTAGATCATGGGAAGTTATGTTGAGGAGTTGTGGATTTAGTAATGTTGCTTTAAGCCCTTTTGCATTATCACAAGCTAAGCTTCTTTTGAGACTTCATTATCCTTCTGAAGGCTATCAACTCGGAGTTTCGAGTAATTCTTTCTTCTTAGGTTGGCAAAATCAACCCCTTTTCTCCATCTCGTCTTGGCGTTGAGAAAAACTATCAAATAGCCAACTTCAGAGGGTAATTAAGACTACTGATAGTTTAGGAGGGATCTGAAGAAAACGCGTGGAGTGAAAACCCTAAATAACCAGATTTTCTAATGAAGTTGTAGTAGTAGAAATTTGCATGGTGAAGAACAATATTGAAGAGGTATTGAAATTTCATGTTTTTTTTGTTTTACTTATTGATATGAATGTTTTAAAATTTTTAACATAGAGGACTAGGTTGATGATATATAGTATTTAAGTTAACTAGTCTTTGTATAACGCAAGATCTTGATCAACTTATTTTTATTTTTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="120" PGL_stop="775"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120" e_stop="775"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="120" e_stop="775" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120" stop="775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332200" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATGTTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTATAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCTTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</gDNA_template>
            <first_frame> H  G  F  T  P  D  S  Y  T  Y  S  S  L  I  R  G  L  C  L  E  K  M  L  V  A  A  V  D  V  F  Y  M  M  E  E  N  G  Y  R  P  D  V  D  N  F  N  A  L  V  L  G  L  C  K  S  K  R  T  D  L  S  L  K  V  F  E  D  M  I  S  K  G  Y  M  P  N  E  I  T  Y  T  I  I  V  E  G  I  I  H  E  D  H  K  E  L  A  S  V  V  L  R  E  L  H  R  K  E  V  I  S  R  N  T  V  E  R  L  A  M  Q  Y  E  L  E  D  M  A  V  C  *  S  F  T  K  P  M  A  C  G  H  R  M  R  N  *  Q  R  F  F  I  S  K  C  *  I  H  Q  I  N  K  V  I  L  M  L  Y  V  R  W  *  L  Y  T  T  N  K  P  S  G  *  L  V  F  R  Y  G  S  *  F  I  V  G  F  K  *  V  S  G  E  T  C  Q  F  S  L  A  Y  S  C  Y  S  I  A  V  T  K  K  V   </first_frame>
            <second_frame>  T  D  L  L  Q  T  L  T  P  I  L  H  *  S  E  D  Y  A  W  K  R  C  W  W  L  L  S  M  Y  S  T  *  W  K  K  M  D  I  G  L  M  L  T  I  S  M  R  L  C  L  D  Y  A  N  P  K  E  Q  T  C  H  *  R  Y  L  R  T  *  S  A  K  V  I  C  L  M  R  *  H  I  P  L  *  S  K  A  S  S  M  K  I  T  R  S  L  H  Q  *  S  *  G  N  C  T  G  K  K  *  *  V  E  I  L  L  K  D  L  L  C  N  M  S  L  K  I  W  Q  Y  A  D  L  S  Q  N  Q  W  L  V  V  T  G  *  E  T  N  K  G  S  S  L  A  N  A  K  Y  T  K  *  T  K  L  F  S  C  C  M  S  D  G  N  F  T  Q  L  I  N  L  R  D  N  W  F  S  D  M  V  V  D  S  *  *  A  S  N  R  *  V  V  K  L  V  N  S  H  *  L  T  L  A  T  Q  L  L  L  Q  K  K  L  </second_frame>
            <third_frame>   R  I  Y  S  R  L  L  H  L  F  F  I  D  Q  R  I  M  L  G  K  D  V  G  G  C  C  R  C  I  L  H  D  G  R  K  W  I  *  A  *  C  *  Q  F  Q  C  A  C  A  W  T  M  Q  I  Q  K  N  R  L  V  I  K  G  I  *  G  H  D  Q  Q  R  L  Y  A  *  *  D  N  I  Y  H  Y  S  R  R  H  H  P  *  R  S  Q  G  A  C  I  S  S  P  K  G  T  A  P  E  R  S  N  K  *  K  Y  C  *  K  T  C  Y  A  I  *  A  *  R  Y  G  S  M  L  I  F  H  K  T  N  G  L  W  S  Q  D  E  K  L  T  K  V  L  H  *  Q  M  L  N  T  P  N  K  Q  S  Y  S  H  A  V  C  Q  M  V  T  L  H  N  *  *  T  F  G  I  I  G  F  Q  I  W  *  L  I  H  S  R  L  Q  I  G  E  W  *  N  L  S  I  L  T  S  L  L  L  L  L  N  C  C  Y  K  K  S  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120" stop="509"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGFTPDSYTYSSLIRGLCLEKMLVAAVDVFYMMEENGYRPDVDNFNALVLGLCKSKRTDLSLKVFEDMISKGYMPNEITYTIIVEGIIHEDHKELASVVLRELHRKEVISRNTVERLAMQYELEDMAVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5080" PGL_stop="8291"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5080" e_stop="5320"/>
            <exon e_start="6619" e_stop="6783"/>
            <exon e_start="7071" e_stop="7128"/>
            <exon e_start="8091" e_stop="8291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5080" e_stop="5320" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="5321" i_stop="6618" i_length="1298"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6619" e_stop="6783" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6784" i_stop="7070" i_length="287"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7071" e_stop="7128" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="7129" i_stop="8090" i_length="962"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8091" e_stop="8291" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5080" stop="5320"/>
              <exon start="6619" stop="6783"/>
              <exon start="7071" stop="7128"/>
              <exon start="8091" stop="8291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326706" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG : AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATG : AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG : TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</gDNA_template>
            <first_frame> *  R  V  P  G  N  T  M  S  N  E  A  P  A  K  P  P  C  D  T  P  E  H  D  S  A  G  V  N  G  F  D  I  N  N  D  T  S  S  T  A  L  A  K  G  L  S  T  I  I  S  S  L  I  R  E  F  D  D  S  A  A  A  T  S  R  S  Q  D  Q  L  S  S  T  L  D  R  L  T  G   : E  L  D  K  L  L  E  D  A  P  L  P  F  I  M  Q  H  A  A  R  I  S  G  V  R  K  R  I  T  S  L  N  S  L  L  K  S  I  Q  R  R  L  D  N  I  D  H  T  L  S  A  G  L  L  H   : E  K  S  S  G  D  G  G  R  D  H  E  N  H  K  S  S  L  K  S :   S  *  S  K  S  R  R  R  F  K  C  P  S  Q  C  P  *  K  S  P  S  D  C  K  H  L  E  L  I  Q  P  C  G  V  K  G  S  L  M  H  E  V  I  T  H  C  V  L  K  R  C  S  F  T  C  Q  K  I  A  W  F  Q  L  C  A  I   </first_frame>
            <second_frame>  D  E  Y  R  E  I  Q  C  R  T  K  P  Q  Q  N  H  R  A  T  H  R  S  M  T  Q  P  A  S  T  A  L  T  S  T  T  T  L  Q  V  L  P  *  Q  R  A  F  P  L  *  Y  L  L  *  S  G  N  L  M  I  V  L  P  P  P  L  V  V  K  I  N  S  L  P  P  S  I  V  S  L  E  :  S  L  T  S  C  W  K  M  P  H  C  L  L  S  C  S  M  L  P  E  F  L  V  L  G  K  E  L  H  R  *  T  H  F  *  S  L  Y  R  G  V  L  I  I  S  T  T  H  Y  L  L  V  C  Y  M  :  R  S  P  Q  G  M  V  G  E  T  M  R  I  I  S  L  H  *  R   : V  H  D  Q  N  P  G  E  D  S  N  V  L  R  S  A  R  R  N  L  L  L  I  A  S  I  W  N  *  F  S  L  V  V  *  K  V  V  *  C  M  R  L  *  H  T  A  F  *  K  D  V  L  L  P  V  K  K  L  H  G  F  S  S  V  P  Y  </second_frame>
            <third_frame>   T  S  T  G  K  Y  N  V  E  R  S  P  S  K  T  T  V  R  H  T  G  A  *  L  S  R  R  Q  R  L  *  H  Q  Q  R  H  F  K  Y  C  L  S  K  G  P  F  H  Y  N  I  F  S  N  P  G  I  *  *  *  C  C  R  H  L  S  *  S  R  S  T  L  F  H  P  R  S  S  H  W  R :   A  *  Q  A  A  G  R  C  P  I  A  F  Y  H  A  A  C  C  Q  N  F  W  C  *  E  K  N  Y  I  V  E  L  T  F  E  V  Y  T  E  A  S  *  *  Y  R  P  H  I  I  C  W  F  V  T  * :   E  V  L  R  G  W  W  A  R  P  *  E  S  *  V  F  I  E  E  :  F  M  I  K  I  Q  E  K  I  Q  M  S  F  A  V  P  V  E  I  S  F  *  L  Q  A  F  G  T  D  S  A  L  W  C  K  R  *  S  D  A  *  G  Y  N  T  L  R  S  E  K  M  F  F  Y  L  S  K  N  C  M  V  S  A  L  C  H  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5083" stop="5320"/>
                    <exon start="6619" stop="6783"/>
                    <exon start="7071" stop="7128"/>
                    <exon start="8091" stop="8097"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVPGNTMSNEAPAKPPCDTPEHDSAGVNGFDINNDTSSTALAKGLSTIISSLIREFDDSAAATSRSQDQLSSTLDRLTGELDKLLEDAPLPFIMQHAARISGVRKRITSLNSLLKSIQRRLDNIDHTLSAGLLHEKSSGDGGRDHENHKSSLKSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="12636" PGL_stop="12990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12636" e_stop="12990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="12636" e_stop="12990" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12636" stop="12990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAGGGACGGCGAAGCTTCCAAGGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAGGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATCCGGTAAATATGCTGCCAGCTGATGAGCTTTTTTTC</gDNA_template>
            <first_frame> L  F  L  F  I  Y  I  Y  I  P  F  C  N  R  Y  V  N  V  S  S  I  C  M  Y  A  G  N  Y  G  F  S  L  R  *  Q  N  G  Y  V  A  G  E  V  F  G  L  F  S  G  C  E  V  Q  V  I  W  L  V  K  S  K  D  V  I  *  *  G  R  R  S  F  Q  G  C  R  S  *  A  D  E  C  *  K  *  *  G  G  G  I  R  S  R  S  F  E  R  Y  G  R  F  *  V  L  P  *  R  S  G  K  Y  A  A  S  *  *  A  F  F  </first_frame>
            <second_frame>  S  F  F  L  Y  I  Y  I  F  H  S  V  I  V  T  L  T  F  L  L  F  V  C  T  P  E  I  M  A  S  A  C  V  N  K  M  G  M  S  P  E  K  F  L  D  C  S  P  A  A  K  Y  K  S  Y  G  W  L  S  P  R  M  S  F  S  R  D  G  E  A  S  K  V  A  G  A  K  Q  T  S  V  E  N  D  K  V  E  E  L  D  P  E  V  S  K  D  M  G  D  F  E  F  C  L  E  D  P  V  N  M  L  P  A  D  E  L  F  F </second_frame>
            <third_frame>   L  S  F  Y  I  Y  I  Y  S  I  L  *  S  L  R  *  R  F  F  Y  L  Y  V  R  R  K  L  W  L  Q  L  A  L  T  K  W  V  C  R  R  R  S  F  W  I  V  L  R  L  R  S  T  S  H  M  V  G  *  V  Q  G  C  H  L  V  G  T  A  K  L  P  R  L  P  E  L  S  R  R  V  L  K  M  I  R  W  R  N  *  I  Q  K  F  R  K  I  W  A  I  L  S  F  A  L  K  I  R  *  I  C  C  Q  L  M  S  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12637" stop="12990"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFLYIYIFHSVIVTLTFLLFVCTPEIMASACVNKMGMSPEKFLDCSPAAKYKSYGWLSPRMSFSRDGEASKVAGAKQTSVENDKVEELDPEVSKDMGDFEFCLEDPVNMLPADELFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20314" PGL_stop="22334"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20314" e_stop="20629"/>
            <exon e_start="20757" e_stop="20852"/>
            <exon e_start="21388" e_stop="21468"/>
            <exon e_start="21739" e_stop="21813"/>
            <exon e_start="22282" e_stop="22334"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.655" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20314" e_stop="20629" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.958">
            <gDNA_intron_boundary i_start="20630" i_stop="20756" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20757" e_stop="20852" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.981">
            <gDNA_intron_boundary i_start="20853" i_stop="21387" i_length="535"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21388" e_stop="21468" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="21469" i_stop="21738" i_length="270"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21739" e_stop="21813" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.655" acc_prob="0.928">
            <gDNA_intron_boundary i_start="21814" i_stop="22281" i_length="468"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22282" e_stop="22334" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20314" stop="20629"/>
              <exon start="20757" stop="20852"/>
              <exon start="21388" stop="21468"/>
              <exon start="21739" stop="21813"/>
              <exon start="22282" stop="22334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331867" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACGGTAAAACCCAGAATCGACAAAACAATGGTTAATGAGTATACATTCTGTTTTGGAGTAGTGGTTAGCATATTGCATTGTTAGACTGTCTATGTCACTTCTCAGTTGCTTGATACTTATGGAAATGCATATTTTATTACATTTAAGTTGTTTTTCACCTTGTTCTCTGTTAGTGCAAATCTTCCCTCCATGGCTGAAGAGTTCAAGTATTCTTGCAACACTGCCAGTGAAACCCTAGAATGGATCCATGCAATTATCAACTTCATTGCACCTTATCGTTATTTTATAGATGCTCATGTCGTCAACTTTTTCAAG : GATAGACTATGGGAAGCTGTGGATAAAGAATGGATGGATTGTTTACAGAAGGAGTCGGTTGAAAATCTTCTCCGGATTCCTTCTGGTGTGGTTCAG : GATCACTGGCCTGGCTCACTTAAAGACTTCATACTTACTCTGAGGTCTCTTTGTCTTTCACGTGAACAGGCTGATTTTCAG : GAATTTTCAGGAATGCACATAGCTTCACTAAGTAATGTTTTAGCTCAAGGCATGAATCATAAGAAAAAGCATGAA : GTGGAAGTACTTTCTGCTCTGGTCAGCTTAGTCGCAAAGCAAGTTGGTGCCCG</gDNA_template>
            <first_frame> N  G  K  T  Q  N  R  Q  N  N  G  *  *  V  Y  I  L  F  W  S  S  G  *  H  I  A  L  L  D  C  L  C  H  F  S  V  A  *  Y  L  W  K  C  I  F  Y  Y  I  *  V  V  F  H  L  V  L  C  *  C  K  S  S  L  H  G  *  R  V  Q  V  F  L  Q  H  C  Q  *  N  P  R  M  D  P  C  N  Y  Q  L  H  C  T  L  S  L  F  Y  R  C  S  C  R  Q  L  F  Q   : G  *  T  M  G  S  C  G  *  R  M  D  G  L  F  T  E  G  V  G  *  K  S  S  P  D  S  F  W  C  G  S   : G  S  L  A  W  L  T  *  R  L  H  T  Y  S  E  V  S  L  S  F  T  *  T  G  *  F  S   : G  I  F  R  N  A  H  S  F  T  K  *  C  F  S  S  R  H  E  S  *  E  K  A  *   : S  G  S  T  F  C  S  G  Q  L  S  R  K  A  S  W  C  P </first_frame>
            <second_frame>  T  V  K  P  R  I  D  K  T  M  V  N  E  Y  T  F  C  F  G  V  V  V  S  I  L  H  C  *  T  V  Y  V  T  S  Q  L  L  D  T  Y  G  N  A  Y  F  I  T  F  K  L  F  F  T  L  F  S  V  S  A  N  L  P  S  M  A  E  E  F  K  Y  S  C  N  T  A  S  E  T  L  E  W  I  H  A  I  I  N  F  I  A  P  Y  R  Y  F  I  D  A  H  V  V  N  F  F  K  :  D  R  L  W  E  A  V  D  K  E  W  M  D  C  L  Q  K  E  S  V  E  N  L  L  R  I  P  S  G  V  V  Q  :  D  H  W  P  G  S  L  K  D  F  I  L  T  L  R  S  L  C  L  S  R  E  Q  A  D  F  Q  :  E  F  S  G  M  H  I  A  S  L  S  N  V  L  A  Q  G  M  N  H  K  K  K  H  E  :  V  E  V  L  S  A  L  V  S  L  V  A  K  Q  V  G  A   </second_frame>
            <third_frame>   R  *  N  P  E  S  T  K  Q  W  L  M  S  I  H  S  V  L  E  *  W  L  A  Y  C  I  V  R  L  S  M  S  L  L  S  C  L  I  L  M  E  M  H  I  L  L  H  L  S  C  F  S  P  C  S  L  L  V  Q  I  F  P  P  W  L  K  S  S  S  I  L  A  T  L  P  V  K  P  *  N  G  S  M  Q  L  S  T  S  L  H  L  I  V  I  L  *  M  L  M  S  S  T  F  S  R :   I  D  Y  G  K  L  W  I  K  N  G  W  I  V  Y  R  R  S  R  L  K  I  F  S  G  F  L  L  V  W  F  R :   I  T  G  L  A  H  L  K  T  S  Y  L  L  *  G  L  F  V  F  H  V  N  R  L  I  F  R :   N  F  Q  E  C  T  *  L  H  *  V  M  F  *  L  K  A  *  I  I  R  K  S  M  K :   W  K  Y  F  L  L  W  S  A  *  S  Q  S  K  L  V  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20399" stop="20629"/>
                    <exon start="20757" stop="20852"/>
                    <exon start="21388" stop="21468"/>
                    <exon start="21739" stop="21813"/>
                    <exon start="22282" stop="22332"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVYVTSQLLDTYGNAYFITFKLFFTLFSVSANLPSMAEEFKYSCNTASETLEWIHAIINFIAPYRYFIDAHVVNFFKDRLWEAVDKEWMDCLQKESVENLLRIPSGVVQDHWPGSLKDFILTLRSLCLSREQADFQEFSGMHIASLSNVLAQGMNHKKKHEVEVLSALVSLVAKQVGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="25203" PGL_stop="27658"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25203" e_stop="25289"/>
            <exon e_start="25638" e_stop="25828"/>
            <exon e_start="26550" e_stop="27358"/>
            <exon e_start="27630" e_stop="27658"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.793" acc_prob="0.927" e_score="0.977"/>
          <exon-intron don_prob="0.994" acc_prob="0.241" e_score="0.963"/>
          <exon-intron don_prob="0.984" acc_prob="0.322" e_score="0.980"/>
          <exon-only e_score="0.448"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="25203" e_stop="25289" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.793" acc_prob="0.927">
            <gDNA_intron_boundary i_start="25290" i_stop="25637" i_length="348"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="25638" e_stop="25828" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.241">
            <gDNA_intron_boundary i_start="25829" i_stop="26549" i_length="721"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="26550" e_stop="27358" e_length="809"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.322">
            <gDNA_intron_boundary i_start="27359" i_stop="27629" i_length="271"/>
          </intron>
          <exon e_serial="4" e_score="0.448">
            <gDNA_exon_boundary e_start="27630" e_stop="27658" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25203" stop="25289"/>
              <exon start="25638" stop="25828"/>
              <exon start="26550" stop="27358"/>
              <exon start="27630" stop="27658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGGCGTCAGGGGAAAGCCTTACGGCGCCAACAGAATCAAAGGATCCTGGAATCCAATTTGCATCATGGGGGGTCGTCAGAATCTG : GTGAACCACGGGAGAGTGTGGCGTTTCTTCATGAATACTCTTCTATTCAGAGTTCTAATAGCGAGTCTAACGCTGTGGACAGATGCTCACTATTTGCAAAATTTTGCGAGTCTGGGTTAGGTCGTTTACATCTCCCTCATTTGGCGGATACAGCTTACAGTGCAATCTGGAGGGAGTCTGAATCATACGCT : GAGTTAATAGGACCTTATTGGTCTCTTCGTGCTGCCCTGGGCCCCGTTTTGGAAACTCTTATACTGCTTGACCGATTGTTGCTCCTCCAGGAGTATGGCAGTGATCTGGAGGCAAGCCTCTTACCTATTTTTAATCCTGTGTTATCTCCGAGGAATATGGCTATCATAGCTAGGAAAATTAGAAAGTAGAAAATTTTCTACAGTCTCTAAAAATGTGATTCAACATACTGTGTTGCTATGATTTGTTCTCAGATATTTTGACCGCTTCTGTGTTATCCTTTTTTTAATAAATCTTCCTTAACCAAGAGAAAAAATGTCAGAAGAAAGGAAGCAATTTGCGACCAGGAACAAGCTATATTATTACAGATGTCTTTTTAACCAGAAAAAGAAGAACAGAAGAAACAGGAAAAATTTTGCAACCAGGACCTAGCTTTGTACATGGTCCAAGCAAAAAATGAAGCTCTAGTGGTGAAATGGTATTATATTTATTTATCTATAGATGATATTTGGTTTGCAAGGTGTCTCTTTACACATTTGATCTCAAGTTTATATACTGCTGTCTTTTCTCAAGGTGAGAAGACAAGCCCAAGAATGAGAATGTGGTTATCAATTGAAATATATATCCAACCTATTGCTAATTTAAATGTTGGTTTCACATTCTGACTACTCAGGGTTCTTATGATTATGATATTGTCCTTTATTCACTTTGGGATGTAATGTCATGAGAAATTGTCCTTTTTAATATATAAGTTGTGGAGGGTTGTGTCCACTGTCCTATGAAGTATTCAAGGACAATAGACAAATGACAG : GAGAGAATGACTTGCAAAATCTTTAAAGA</gDNA_template>
            <first_frame> *  G  V  R  G  K  P  Y  G  A  N  R  I  K  G  S  W  N  P  I  C  I  M  G  G  R  Q  N  L  :  V  N  H  G  R  V  W  R  F  F  M  N  T  L  L  F  R  V  L  I  A  S  L  T  L  W  T  D  A  H  Y  L  Q  N  F  A  S  L  G  *  V  V  Y  I  S  L  I  W  R  I  Q  L  T  V  Q  S  G  G  S  L  N  H  T  L :   S  *  *  D  L  I  G  L  F  V  L  P  W  A  P  F  W  K  L  L  Y  C  L  T  D  C  C  S  S  R  S  M  A  V  I  W  R  Q  A  S  Y  L  F  L  I  L  C  Y  L  R  G  I  W  L  S  *  L  G  K  L  E  S  R  K  F  S  T  V  S  K  N  V  I  Q  H  T  V  L  L  *  F  V  L  R  Y  F  D  R  F  C  V  I  L  F  L  I  N  L  P  *  P  R  E  K  M  S  E  E  R  K  Q  F  A  T  R  N  K  L  Y  Y  Y  R  C  L  F  N  Q  K  K  K  N  R  R  N  R  K  N  F  A  T  R  T  *  L  C  T  W  S  K  Q  K  M  K  L  *  W  *  N  G  I  I  F  I  Y  L  *  M  I  F  G  L  Q  G  V  S  L  H  I  *  S  Q  V  Y  I  L  L  S  F  L  K  V  R  R  Q  A  Q  E  *  E  C  G  Y  Q  L  K  Y  I  S  N  L  L  L  I  *  M  L  V  S  H  S  D  Y  S  G  F  L  *  L  *  Y  C  P  L  F  T  L  G  C  N  V  M  R  N  C  P  F  *  Y  I  S  C  G  G  L  C  P  L  S  Y  E  V  F  K  D  N  R  Q  M  T   : G  E  N  D  L  Q  N  L  *  R </first_frame>
            <second_frame>  R  A  S  G  E  S  L  T  A  P  T  E  S  K  D  P  G  I  Q  F  A  S  W  G  V  V  R  I  W :   *  T  T  G  E  C  G  V  S  S  *  I  L  F  Y  S  E  F  *  *  R  V  *  R  C  G  Q  M  L  T  I  C  K  I  L  R  V  W  V  R  S  F  T  S  P  S  F  G  G  Y  S  L  Q  C  N  L  E  G  V  *  I  I  R   : *  V  N  R  T  L  L  V  S  S  C  C  P  G  P  R  F  G  N  S  Y  T  A  *  P  I  V  A  P  P  G  V  W  Q  *  S  G  G  K  P  L  T  Y  F  *  S  C  V  I  S  E  E  Y  G  Y  H  S  *  E  N  *  K  V  E  N  F  L  Q  S  L  K  M  *  F  N  I  L  C  C  Y  D  L  F  S  D  I  L  T  A  S  V  L  S  F  F  *  *  I  F  L  N  Q  E  K  K  C  Q  K  K  G  S  N  L  R  P  G  T  S  Y  I  I  T  D  V  F  L  T  R  K  R  R  T  E  E  T  G  K  I  L  Q  P  G  P  S  F  V  H  G  P  S  K  K  *  S  S  S  G  E  M  V  L  Y  L  F  I  Y  R  *  Y  L  V  C  K  V  S  L  Y  T  F  D  L  K  F  I  Y  C  C  L  F  S  R  *  E  D  K  P  K  N  E  N  V  V  I  N  *  N  I  Y  P  T  Y  C  *  F  K  C  W  F  H  I  L  T  T  Q  G  S  Y  D  Y  D  I  V  L  Y  S  L  W  D  V  M  S  *  E  I  V  L  F  N  I  *  V  V  E  G  C  V  H  C  P  M  K  Y  S  R  T  I  D  K  *  Q  :  E  R  M  T  C  K  I  F  K   </second_frame>
            <third_frame>   G  R  Q  G  K  A  L  R  R  Q  Q  N  Q  R  I  L  E  S  N  L  H  H  G  G  S  S  E  S   : G  E  P  R  E  S  V  A  F  L  H  E  Y  S  S  I  Q  S  S  N  S  E  S  N  A  V  D  R  C  S  L  F  A  K  F  C  E  S  G  L  G  R  L  H  L  P  H  L  A  D  T  A  Y  S  A  I  W  R  E  S  E  S  Y  A  :  E  L  I  G  P  Y  W  S  L  R  A  A  L  G  P  V  L  E  T  L  I  L  L  D  R  L  L  L  L  Q  E  Y  G  S  D  L  E  A  S  L  L  P  I  F  N  P  V  L  S  P  R  N  M  A  I  I  A  R  K  I  R  K  *  K  I  F  Y  S  L  *  K  C  D  S  T  Y  C  V  A  M  I  C  S  Q  I  F  *  P  L  L  C  Y  P  F  F  N  K  S  S  L  T  K  R  K  N  V  R  R  K  E  A  I  C  D  Q  E  Q  A  I  L  L  Q  M  S  F  *  P  E  K  E  E  Q  K  K  Q  E  K  F  C  N  Q  D  L  A  L  Y  M  V  Q  A  K  N  E  A  L  V  V  K  W  Y  Y  I  Y  L  S  I  D  D  I  W  F  A  R  C  L  F  T  H  L  I  S  S  L  Y  T  A  V  F  S  Q  G  E  K  T  S  P  R  M  R  M  W  L  S  I  E  I  Y  I  Q  P  I  A  N  L  N  V  G  F  T  F  *  L  L  R  V  L  M  I  M  I  L  S  F  I  H  F  G  M  *  C  H  E  K  L  S  F  L  I  Y  K  L  W  R  V  V  S  T  V  L  *  S  I  Q  G  Q  *  T  N  D  R :   R  E  *  L  A  K  S  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25205" stop="25289"/>
                    <exon start="25638" stop="25828"/>
                    <exon start="26550" stop="26738"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRQGKALRRQQNQRILESNLHHGGSSESGEPRESVAFLHEYSSIQSSNSESNAVDRCSLFAKFCESGLGRLHLPHLADTAYSAIWRESESYAELIGPYWSLRAALGPVLETLILLDRLLLLQEYGSDLEASLLPIFNPVLSPRNMAIIARKIRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26928" stop="27212"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEKEEQKKQEKFCNQDLALYMVQAKNEALVVKWYYIYLSIDDIWFARCLFTHLISSLYTAVFSQGEKTSPRMRMWLSIEIYIQPIANLNVGFTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="30263" PGL_stop="30847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30263" e_stop="30847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="30263" e_stop="30847" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30263" stop="30847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334483" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTAGTCAATCCAAAATTTTTCCCTAAAAGGAAAACCTATTTATGTTAAGAAATTATGGTAAATAAAATCCAACAAATCTCCTCCCCCTTGGCCTGTATTTCTGACAAAATAAATTTCTCCACATTCTTCATTTAATCTTCAACAACTTGCTTCTCTTCTTCTTAATCTCCTTTGTAAAATTTATGTCTCAACATAGAAAACCTCTCTGAAACAATTTCTCCAACAAAATCTTCATTACTGTCAAAAAGATTGCGGCTAGAACTACACCTGTCAAGATGAACACACCTCTTTCTAACCTGGTCCAATAATCGATTATCGAACCACTGAACCTGACTCTGTCATTAAATGGCTCTAATACCACTTGTTAGGATCGAAATAAGCAGGTGTAAATGCGGAAGCTAGCAAAGCAAACTTCGAAAGACCACGAGTAAGAAGACAACGAGAAATATACCAAAAGACACAAAGATTTAACGTGGTTCGGTCAATCGACCTACGTTCACAAAGGAGATGAGCAATCCACTATAAATATGAGAGTACAATATACAGAGAGAAACAACATCAACCAATTCATTCGGAATATATG</gDNA_template>
            <first_frame> D  *  S  I  Q  N  F  S  L  K  G  K  P  I  Y  V  K  K  L  W  *  I  K  S  N  K  S  P  P  P  W  P  V  F  L  T  K  *  I  S  P  H  S  S  F  N  L  Q  Q  L  A  S  L  L  L  N  L  L  C  K  I  Y  V  S  T  *  K  T  S  L  K  Q  F  L  Q  Q  N  L  H  Y  C  Q  K  D  C  G  *  N  Y  T  C  Q  D  E  H  T  S  F  *  P  G  P  I  I  D  Y  R  T  T  E  P  D  S  V  I  K  W  L  *  Y  H  L  L  G  S  K  *  A  G  V  N  A  E  A  S  K  A  N  F  E  R  P  R  V  R  R  Q  R  E  I  Y  Q  K  T  Q  R  F  N  V  V  R  S  I  D  L  R  S  Q  R  R  *  A  I  H  Y  K  Y  E  S  T  I  Y  R  E  K  Q  H  Q  P  I  H  S  E  Y  M </first_frame>
            <second_frame>  I  S  Q  S  K  I  F  P  *  K  E  N  L  F  M  L  R  N  Y  G  K  *  N  P  T  N  L  L  P  L  G  L  Y  F  *  Q  N  K  F  L  H  I  L  H  L  I  F  N  N  L  L  L  F  F  L  I  S  F  V  K  F  M  S  Q  H  R  K  P  L  *  N  N  F  S  N  K  I  F  I  T  V  K  K  I  A  A  R  T  T  P  V  K  M  N  T  P  L  S  N  L  V  Q  *  S  I  I  E  P  L  N  L  T  L  S  L  N  G  S  N  T  T  C  *  D  R  N  K  Q  V  *  M  R  K  L  A  K  Q  T  S  K  D  H  E  *  E  D  N  E  K  Y  T  K  R  H  K  D  L  T  W  F  G  Q  S  T  Y  V  H  K  G  D  E  Q  S  T  I  N  M  R  V  Q  Y  T  E  R  N  N  I  N  Q  F  I  R  N  I   </second_frame>
            <third_frame>   L  V  N  P  K  F  F  P  K  R  K  T  Y  L  C  *  E  I  M  V  N  K  I  Q  Q  I  S  S  P  L  A  C  I  S  D  K  I  N  F  S  T  F  F  I  *  S  S  T  T  C  F  S  S  S  *  S  P  L  *  N  L  C  L  N  I  E  N  L  S  E  T  I  S  P  T  K  S  S  L  L  S  K  R  L  R  L  E  L  H  L  S  R  *  T  H  L  F  L  T  W  S  N  N  R  L  S  N  H  *  T  *  L  C  H  *  M  A  L  I  P  L  V  R  I  E  I  S  R  C  K  C  G  S  *  Q  S  K  L  R  K  T  T  S  K  K  T  T  R  N  I  P  K  D  T  K  I  *  R  G  S  V  N  R  P  T  F  T  K  E  M  S  N  P  L  *  I  *  E  Y  N  I  Q  R  E  T  T  S  T  N  S  F  G  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0179K09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="34967" PGL_stop="39779"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34967" e_stop="35711"/>
            <exon e_start="37726" e_stop="37997"/>
            <exon e_start="39590" e_stop="39779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34967" e_stop="35711" e_length="745"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35712" i_stop="37725" i_length="2014"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37726" e_stop="37997" e_length="272"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37998" i_stop="39589" i_length="1592"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39590" e_stop="39779" e_length="190"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34967" stop="35711"/>
              <exon start="37726" stop="37997"/>
              <exon start="39590" stop="39779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322483" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCCTTTTACTATATTCTAAAAATATGACACATAATATTTTAAGTACTATATTAAGAAATAAAATTAGTTTGTCTTCTTAAACTCAAGGGTCGTTGTTGGATGCTTTTTACACTATTATCTTAATTTTAAAATTCTCTTTTTATTTTTGTGATACACTTTTATTAGCTAGCCACCAAATAACCAAAATATCACGATATATATAAATTTATTCAAAATAATTTCTATTATATTTTATATATTCCAAAACTTTTCATTTTTTTTTATAAATTTTGTGTCTAGTCAACATGAATACATATAACTTTTTCAGTAAGTTTTATTAAATACGATTATATAGATCAAAAAAGAAATTTTTTATTAAATTTTATTTCAGTTCAAAATAGCGTAATTTAAAATAATATTGAAATTAGCCATGGGACTATAATAACTAGTGCTTATATATAGATGTAGTAGAGTACCATTTTAGTGATGTTAATAGGGAAATATTTTTATCAACCACCTCCCCTTGGACTTTGATACACTTAAATCTCCTCTTTCTTTTCATTTCTCTTCAAAATGAGTAACAACAACAGCTTGAGCATGGTGGAATCCAAATTACCACCAGGATTTAGATTCCATCCAAGAGATGAAGAACTTATTTGTGATTACTTAATGAAGAAAGTTGATCAACAATCCGAATATCAACAACAATACCCTCTTCTCATAGAAGTTGACCTCAATAAATCTGAACCATGGGAAATTCCTG : AAGTGGCATGTGTTGGAGGGAAGGAGTGGTACTTCTACAGCCAACGTGACCGAAAATACGCGACGGGGCTCCGAACAAACAGAGCCACCGTATCTGGTTACTGGAAAGCCACCGGAAAAGATCGTGCAATCATCAGAAAAGGAAGTCTAGTAGGAATGAGAAAAACCCTAGTTTTCTATCAAGGGAGAGCCCCAAAAGGAAGAAAAAGTGACTGGGTTATGCATGAATTCCGCCTAGAACTTCCCATTCGTCCTCAAATTTCTTCTATCAAG : GAGGATTGGGTATTATGCCGAGTATTTCACAAGAAGAAGGAATTACTTGCTACAAAGCAAGAAATTGGAAGCAACAATATATACTACGATAACGATACAATAAGTTGTTCATCTCTACCACCATTAATGGATCCTTACATTACTTTCGACCAAACAAACCCTAACAACAATAATATGAATATGAATGAAT</gDNA_template>
            <first_frame> F  S  F  Y  Y  I  L  K  I  *  H  I  I  F  *  V  L  Y  *  E  I  K  L  V  C  L  L  K  L  K  G  R  C  W  M  L  F  T  L  L  S  *  F  *  N  S  L  F  I  F  V  I  H  F  Y  *  L  A  T  K  *  P  K  Y  H  D  I  Y  K  F  I  Q  N  N  F  Y  Y  I  L  Y  I  P  K  L  F  I  F  F  Y  K  F  C  V  *  S  T  *  I  H  I  T  F  S  V  S  F  I  K  Y  D  Y  I  D  Q  K  R  N  F  L  L  N  F  I  S  V  Q  N  S  V  I  *  N  N  I  E  I  S  H  G  T  I  I  T  S  A  Y  I  *  M  *  *  S  T  I  L  V  M  L  I  G  K  Y  F  Y  Q  P  P  P  L  G  L  *  Y  T  *  I  S  S  F  F  S  F  L  F  K  M  S  N  N  N  S  L  S  M  V  E  S  K  L  P  P  G  F  R  F  H  P  R  D  E  E  L  I  C  D  Y  L  M  K  K  V  D  Q  Q  S  E  Y  Q  Q  Q  Y  P  L  L  I  E  V  D  L  N  K  S  E  P  W  E  I  P   : E  V  A  C  V  G  G  K  E  W  Y  F  Y  S  Q  R  D  R  K  Y  A  T  G  L  R  T  N  R  A  T  V  S  G  Y  W  K  A  T  G  K  D  R  A  I  I  R  K  G  S  L  V  G  M  R  K  T  L  V  F  Y  Q  G  R  A  P  K  G  R  K  S  D  W  V  M  H  E  F  R  L  E  L  P  I  R  P  Q  I  S  S  I  K  :  E  D  W  V  L  C  R  V  F  H  K  K  K  E  L  L  A  T  K  Q  E  I  G  S  N  N  I  Y  Y  D  N  D  T  I  S  C  S  S  L  P  P  L  M  D  P  Y  I  T  F  D  Q  T  N  P  N  N  N  N  M  N  M  N  E  </first_frame>
            <second_frame>  F  P  F  T  I  F  *  K  Y  D  T  *  Y  F  K  Y  Y  I  K  K  *  N  *  F  V  F  L  N  S  R  V  V  V  G  C  F  L  H  Y  Y  L  N  F  K  I  L  F  L  F  L  *  Y  T  F  I  S  *  P  P  N  N  Q  N  I  T  I  Y  I  N  L  F  K  I  I  S  I  I  F  Y  I  F  Q  N  F  S  F  F  F  I  N  F  V  S  S  Q  H  E  Y  I  *  L  F  Q  *  V  L  L  N  T  I  I  *  I  K  K  E  I  F  Y  *  I  L  F  Q  F  K  I  A  *  F  K  I  I  L  K  L  A  M  G  L  *  *  L  V  L  I  Y  R  C  S  R  V  P  F  *  *  C  *  *  G  N  I  F  I  N  H  L  P  L  D  F  D  T  L  K  S  P  L  S  F  H  F  S  S  K  *  V  T  T  T  A  *  A  W  W  N  P  N  Y  H  Q  D  L  D  S  I  Q  E  M  K  N  L  F  V  I  T  *  *  R  K  L  I  N  N  P  N  I  N  N  N  T  L  F  S  *  K  L  T  S  I  N  L  N  H  G  K  F  L  :  K  W  H  V  L  E  G  R  S  G  T  S  T  A  N  V  T  E  N  T  R  R  G  S  E  Q  T  E  P  P  Y  L  V  T  G  K  P  P  E  K  I  V  Q  S  S  E  K  E  V  *  *  E  *  E  K  P  *  F  S  I  K  G  E  P  Q  K  E  E  K  V  T  G  L  C  M  N  S  A  *  N  F  P  F  V  L  K  F  L  L  S  R :   R  I  G  Y  Y  A  E  Y  F  T  R  R  R  N  Y  L  L  Q  S  K  K  L  E  A  T  I  Y  T  T  I  T  I  Q  *  V  V  H  L  Y  H  H  *  W  I  L  T  L  L  S  T  K  Q  T  L  T  T  I  I  *  I  *  M  N </second_frame>
            <third_frame>   F  L  L  L  Y  S  K  N  M  T  H  N  I  L  S  T  I  L  R  N  K  I  S  L  S  S  *  T  Q  G  S  L  L  D  A  F  Y  T  I  I  L  I  L  K  F  S  F  Y  F  C  D  T  L  L  L  A  S  H  Q  I  T  K  I  S  R  Y  I  *  I  Y  S  K  *  F  L  L  Y  F  I  Y  S  K  T  F  H  F  F  L  *  I  L  C  L  V  N  M  N  T  Y  N  F  F  S  K  F  Y  *  I  R  L  Y  R  S  K  K  K  F  F  I  K  F  Y  F  S  S  K  *  R  N  L  K  *  Y  *  N  *  P  W  D  Y  N  N  *  C  L  Y  I  D  V  V  E  Y  H  F  S  D  V  N  R  E  I  F  L  S  T  T  S  P  W  T  L  I  H  L  N  L  L  F  L  F  I  S  L  Q  N  E  *  Q  Q  Q  L  E  H  G  G  I  Q  I  T  T  R  I  *  I  P  S  K  R  *  R  T  Y  L  *  L  L  N  E  E  S  *  S  T  I  R  I  S  T  T  I  P  S  S  H  R  S  *  P  Q  *  I  *  T  M  G  N  S  * :   S  G  M  C  W  R  E  G  V  V  L  L  Q  P  T  *  P  K  I  R  D  G  A  P  N  K  Q  S  H  R  I  W  L  L  E  S  H  R  K  R  S  C  N  H  Q  K  R  K  S  S  R  N  E  K  N  P  S  F  L  S  R  E  S  P  K  R  K  K  K  *  L  G  Y  A  *  I  P  P  R  T  S  H  S  S  S  N  F  F  Y  Q   : G  G  L  G  I  M  P  S  I  S  Q  E  E  G  I  T  C  Y  K  A  R  N  W  K  Q  Q  Y  I  L  R  *  R  Y  N  K  L  F  I  S  T  T  I  N  G  S  L  H  Y  F  R  P  N  K  P  *  Q  Q  *  Y  E  Y  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35492" stop="35711"/>
                    <exon start="37726" stop="37997"/>
                    <exon start="39590" stop="39778"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSFFSFLFKMSNNNSLSMVESKLPPGFRFHPRDEELICDYLMKKVDQQSEYQQQYPLLIEVDLNKSEPWEIPEVACVGGKEWYFYSQRDRKYATGLRTNRATVSGYWKATGKDRAIIRKGSLVGMRKTLVFYQGRAPKGRKSDWVMHEFRLELPIRPQISSIKEDWVLCRVFHKKKELLATKQEIGSNNIYYDNDTISCSSLPPLMDPYITFDQTNPNNNNMNMNE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="39813" PGL_stop="40361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39813" e_stop="40361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="39813" e_stop="40361" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39813" stop="40361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344159" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCCTAACCAAACTTTCACTTCCCATAGCCACCACCTCCCCTCCGCCACAACCGCCATCGGATCTACCGCATACGGTGGTTTTCCAGCTGATATTGGAAATTACCTAAATGCCACTGCAACATCCTCTACGTGTGATAATAACAAAGTAATTAGAGCTGTTTTAAGTCATTTGAGTACCAAGAATAATATTATTATGGAAGGTAATAATAGCAATAACAACAATATTATCAATCCTGCCCAAAATATAAAAGGAGGAAATTCACCTAGCTTTGGTGAAGGAAGTTCTGAAACTAGCTTTTTATCTGAGGTGGGATATCCTACAATGTGGAACAATTATTGATTTTTGAGAGAAAATATTCTACTTAGATGTGTGATATAATATATGACAAGTCTTGTTTTAGTTGCTAGTATTATATTGTAATCTTAGAATATATATATATAACTATACTAGCTAGATTAATTTCCAATGCATGTAATTCCAATAATGATACTTTCCTAGTGGTTAATGTATATAATTGTCTCCTAGATAGATTGGAATTCTCCGT</gDNA_template>
            <first_frame> S  P  L  T  K  L  S  L  P  I  A  T  T  S  P  P  P  Q  P  P  S  D  L  P  H  T  V  V  F  Q  L  I  L  E  I  T  *  M  P  L  Q  H  P  L  R  V  I  I  T  K  *  L  E  L  F  *  V  I  *  V  P  R  I  I  L  L  W  K  V  I  I  A  I  T  T  I  L  S  I  L  P  K  I  *  K  E  E  I  H  L  A  L  V  K  E  V  L  K  L  A  F  Y  L  R  W  D  I  L  Q  C  G  T  I  I  D  F  *  E  K  I  F  Y  L  D  V  *  Y  N  I  *  Q  V  L  F  *  L  L  V  L  Y  C  N  L  R  I  Y  I  Y  N  Y  T  S  *  I  N  F  Q  C  M  *  F  Q  *  *  Y  F  P  S  G  *  C  I  *  L  S  P  R  *  I  G  I  L  R </first_frame>
            <second_frame>  H  P  *  P  N  F  H  F  P  *  P  P  P  P  L  R  H  N  R  H  R  I  Y  R  I  R  W  F  S  S  *  Y  W  K  L  P  K  C  H  C  N  I  L  Y  V  *  *  *  Q  S  N  *  S  C  F  K  S  F  E  Y  Q  E  *  Y  Y  Y  G  R  *  *  *  Q  *  Q  Q  Y  Y  Q  S  C  P  K  Y  K  R  R  K  F  T  *  L  W  *  R  K  F  *  N  *  L  F  I  *  G  G  I  S  Y  N  V  E  Q  L  L  I  F  E  R  K  Y  S  T  *  M  C  D  I  I  Y  D  K  S  C  F  S  C  *  Y  Y  I  V  I  L  E  Y  I  Y  I  T  I  L  A  R  L  I  S  N  A  C  N  S  N  N  D  T  F  L  V  V  N  V  Y  N  C  L  L  D  R  L  E  F  S   </second_frame>
            <third_frame>   T  P  N  Q  T  F  T  S  H  S  H  H  L  P  S  A  T  T  A  I  G  S  T  A  Y  G  G  F  P  A  D  I  G  N  Y  L  N  A  T  A  T  S  S  T  C  D  N  N  K  V  I  R  A  V  L  S  H  L  S  T  K  N  N  I  I  M  E  G  N  N  S  N  N  N  N  I  I  N  P  A  Q  N  I  K  G  G  N  S  P  S  F  G  E  G  S  S  E  T  S  F  L  S  E  V  G  Y  P  T  M  W  N  N  Y  *  F  L  R  E  N  I  L  L  R  C  V  I  *  Y  M  T  S  L  V  L  V  A  S  I  I  L  *  S  *  N  I  Y  I  *  L  Y  *  L  D  *  F  P  M  H  V  I  P  I  M  I  L  S  *  W  L  M  Y  I  I  V  S  *  I  D  W  N  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39815" stop="40156"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPNQTFTSHSHHLPSATTAIGSTAYGGFPADIGNYLNATATSSTCDNNKVIRAVLSHLSTKNNIIMEGNNSNNNNIINPAQNIKGGNSPSFGEGSSETSFLSEVGYPTMWNNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="43916" PGL_stop="48729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43916" e_stop="44259"/>
            <exon e_start="44361" e_stop="44452"/>
            <exon e_start="44648" e_stop="44723"/>
            <exon e_start="45069" e_stop="45131"/>
            <exon e_start="45445" e_stop="45574"/>
            <exon e_start="45701" e_stop="45786"/>
            <exon e_start="45877" e_stop="46002"/>
            <exon e_start="46321" e_stop="46425"/>
            <exon e_start="46515" e_stop="46571"/>
            <exon e_start="46992" e_stop="47054"/>
            <exon e_start="47128" e_stop="47204"/>
            <exon e_start="47681" e_stop="47753"/>
            <exon e_start="48183" e_stop="48729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="0.985"/>
          <exon-intron don_prob="0.991" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="43916" e_stop="44259" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="44260" i_stop="44360" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44361" e_stop="44452" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.987">
            <gDNA_intron_boundary i_start="44453" i_stop="44647" i_length="195"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44648" e_stop="44723" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44724" i_stop="45068" i_length="345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45069" e_stop="45131" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.850" acc_prob="0.987">
            <gDNA_intron_boundary i_start="45132" i_stop="45444" i_length="313"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45445" e_stop="45574" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.835">
            <gDNA_intron_boundary i_start="45575" i_stop="45700" i_length="126"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45701" e_stop="45786" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45787" i_stop="45876" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45877" e_stop="46002" e_length="126"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.905">
            <gDNA_intron_boundary i_start="46003" i_stop="46320" i_length="318"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="46321" e_stop="46425" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.803" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46426" i_stop="46514" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="46515" e_stop="46571" e_length="57"/>
          </exon>
          <intron i_serial="9" don_prob="0.974" acc_prob="0.968">
            <gDNA_intron_boundary i_start="46572" i_stop="46991" i_length="420"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="46992" e_stop="47054" e_length="63"/>
          </exon>
          <intron i_serial="10" don_prob="0.928" acc_prob="0.983">
            <gDNA_intron_boundary i_start="47055" i_stop="47127" i_length="73"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="47128" e_stop="47204" e_length="77"/>
          </exon>
          <intron i_serial="11" don_prob="0.939" acc_prob="0.948">
            <gDNA_intron_boundary i_start="47205" i_stop="47680" i_length="476"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="47681" e_stop="47753" e_length="73"/>
          </exon>
          <intron i_serial="12" don_prob="0.964" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47754" i_stop="48182" i_length="429"/>
          </intron>
          <exon e_serial="13" e_score="0.996">
            <gDNA_exon_boundary e_start="48183" e_stop="48729" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43916" stop="44259"/>
              <exon start="44361" stop="44452"/>
              <exon start="44648" stop="44723"/>
              <exon start="45069" stop="45131"/>
              <exon start="45445" stop="45574"/>
              <exon start="45701" stop="45786"/>
              <exon start="45877" stop="46002"/>
              <exon start="46321" stop="46425"/>
              <exon start="46515" stop="46571"/>
              <exon start="46992" stop="47054"/>
              <exon start="47128" stop="47204"/>
              <exon start="47681" stop="47753"/>
              <exon start="48183" stop="48729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGCGCCATGGAACTCCGGCGACAGCATAGCCTAAGCTCCTTCTTCAGCAAGGAGAACTGAGCTTAAGTATAGTAATATCTTTCAATCCGCTTGAACTTTGTAGTCCAAGAGAACGGAGCTTTTAAGCTAGAAACTTTAATGGAGTTAACTTTCCCAGTGAAAGCTCAGTTATTTGGCTCCAAAATTGGTCACAAATCTCTAAGCTACTCAACTTCAGTAAAATTCTACCAGAAAGTATCTCGTCCTCAATTTTCAGCATGTGGAATCAGGGTTCGTTCGGAATTTGACCATAAAATCAATGGCGCTTTCTCTCCTGATTCTGACGCTCGGATTCTCGACCGG : CAAAAAGCATTGGATGCTGCAATGAACGATATAAACAGCTCGTTTGGCAAAGGAAGCGTTACTAGATTGGGTAGTGCTGGCGGAGCTCTGGT : TGAAACTTTTCCGAGTGGCTGCTTGACGCTAGACTTTGCTTTAGGTGGTGGCATTCCCAAAGGCAGAATTGTTGAG : ATATATGGGCCCGAAAGTAGTGGAAAGACTACCTTAGCTCTCCATGCTATTGCAGAAGTACAG : AAGCTAGGAGGCAATGCAATGCTTGTTGATGCTGAGCATGCTTTTGATCCTGCATACTCCAAAGCACTTGGAGTAGATGTAGAGAATTTGATCGTCTGCCAGCCTGATAATGGAGAGATGGCTCTAGAAA : TCGCAGACCGGATGTGTAGATCAGGTGCCGTAGATCTCATTTGCATTGATTCAGTCTCAGCCCTTACTCCACGTGCTGAAATTGAG : GGAGAAATCGGGATGCAGCAAATGGGTTTACAAGCACGCCTGATGAGTCAAGCTTTACGTAAAATGTCAGGCAATGCCTCCAAAGCTGGATGTACTCTTATATTCCTCAATCAGATAAGATACAAG : ATTGGTGTTTATTACGGAAATCCTGAGGTCACAAGTGGAGGGATTGCCTTAAAGTTTTTCGCCTCCGTTCGACTTGAAATCCGTTCCACAGGGAAGATAAAATCT : GCAAAAGGAGACGAGGAAGTGGGTATTAAGGTCCGAGTGAGAGTTCAAAAGAGTAAG : GTTTCTAGACCATACAAGCAAGCAGAATTTGAAATTATGTTTGGAGAAGGAGTGAGCAAGCTG : GGTTGTGTATTAGATTGTGCGGAACTGATTGAGGTGGTGGCTAAGAAAGGTTCATGGTATAACTACGGAGAGCATAG : GCTGGGACAGGGAAGAGAGAAAGCATTGCAATATTTGAGAGAAAATCCTCTTCTCTCTGAAGAAATAGAAAAG : ATGGTTCGGTCATCGGTGCTAGAGACAAACGGGTTTTTAGGCTCTTCTTCATTGAAACATCCACTGCCGCAGCTTCTAGAGGAAGATGCACTTCAAGAGATGCAATAACGCGGATCAGAGTTCTGCTTCAATTGATTATGATAACAGAGCATTTTTCAGCCAACATTGACATCCATATGTGATTCTACATTAGAAATGAGCAAAGTTGGGGACACTGCCAGATTTGCTTTGTATGAGACCATTTCTGTGCACTAGAGATTCTTGAAGAAAGGTGTATATTCTTGTAAGCTAATGGATCTTTGCACGAAGAGGAAGACACATACATCCTGAATTAACCAAACTGAAGAATTAGAGTTAAGGTGGTGAAAAGGAGTGTTAGCTCTTTGCTGCATATTTTGTCTTTGTTTTGGTTGTACTGGTAGCCAAAATTTTGAAAATCTGAAGATTTTTGCTTGTAACATTTGCATTGGAAGTACCACTCTAGTGTTGCGTTGGTATTATTATCCCATTAGCTCTATGCATTAAGAAATCTAGTAAATATTTGTCT</gDNA_template>
            <first_frame> M  A  P  W  N  S  G  D  S  I  A  *  A  P  S  S  A  R  R  T  E  L  K  Y  S  N  I  F  Q  S  A  *  T  L  *  S  K  R  T  E  L  L  S  *  K  L  *  W  S  *  L  S  Q  *  K  L  S  Y  L  A  P  K  L  V  T  N  L  *  A  T  Q  L  Q  *  N  S  T  R  K  Y  L  V  L  N  F  Q  H  V  E  S  G  F  V  R  N  L  T  I  K  S  M  A  L  S  L  L  I  L  T  L  G  F  S  T  G :   K  K  H  W  M  L  Q  *  T  I  *  T  A  R  L  A  K  E  A  L  L  D  W  V  V  L  A  E  L  W   : L  K  L  F  R  V  A  A  *  R  *  T  L  L  *  V  V  A  F  P  K  A  E  L  L  R :   Y  M  G  P  K  V  V  E  R  L  P  *  L  S  M  L  L  Q  K  Y  R :   S  *  E  A  M  Q  C  L  L  M  L  S  M  L  L  I  L  H  T  P  K  H  L  E  *  M  *  R  I  *  S  S  A  S  L  I  M  E  R  W  L  *  K  :  S  Q  T  G  C  V  D  Q  V  P  *  I  S  F  A  L  I  Q  S  Q  P  L  L  H  V  L  K  L  R :   E  K  S  G  C  S  K  W  V  Y  K  H  A  *  *  V  K  L  Y  V  K  C  Q  A  M  P  P  K  L  D  V  L  L  Y  S  S  I  R  *  D  T  R :   L  V  F  I  T  E  I  L  R  S  Q  V  E  G  L  P  *  S  F  S  P  P  F  D  L  K  S  V  P  Q  G  R  *  N  L :   Q  K  E  T  R  K  W  V  L  R  S  E  *  E  F  K  R  V  R :   F  L  D  H  T  S  K  Q  N  L  K  L  C  L  E  K  E  *  A  S  W :   V  V  Y  *  I  V  R  N  *  L  R  W  W  L  R  K  V  H  G  I  T  T  E  S  I   : G  W  D  R  E  E  R  K  H  C  N  I  *  E  K  I  L  F  S  L  K  K  *  K  R :   W  F  G  H  R  C  *  R  Q  T  G  F  *  A  L  L  H  *  N  I  H  C  R  S  F  *  R  K  M  H  F  K  R  C  N  N  A  D  Q  S  S  A  S  I  D  Y  D  N  R  A  F  F  S  Q  H  *  H  P  Y  V  I  L  H  *  K  *  A  K  L  G  T  L  P  D  L  L  C  M  R  P  F  L  C  T  R  D  S  *  R  K  V  Y  I  L  V  S  *  W  I  F  A  R  R  G  R  H  I  H  P  E  L  T  K  L  K  N  *  S  *  G  G  E  K  E  C  *  L  F  A  A  Y  F  V  F  V  L  V  V  L  V  A  K  I  L  K  I  *  R  F  L  L  V  T  F  A  L  E  V  P  L  *  C  C  V  G  I  I  I  P  L  A  L  C  I  K  K  S  S  K  Y  L  S </first_frame>
            <second_frame>  W  R  H  G  T  P  A  T  A  *  P  K  L  L  L  Q  Q  G  E  L  S  L  S  I  V  I  S  F  N  P  L  E  L  C  S  P  R  E  R  S  F  *  A  R  N  F  N  G  V  N  F  P  S  E  S  S  V  I  W  L  Q  N  W  S  Q  I  S  K  L  L  N  F  S  K  I  L  P  E  S  I  S  S  S  I  F  S  M  W  N  Q  G  S  F  G  I  *  P  *  N  Q  W  R  F  L  S  *  F  *  R  S  D  S  R  P   : A  K  S  I  G  C  C  N  E  R  Y  K  Q  L  V  W  Q  R  K  R  Y  *  I  G  *  C  W  R  S  S  G  :  *  N  F  S  E  W  L  L  D  A  R  L  C  F  R  W  W  H  S  Q  R  Q  N  C  *   : D  I  W  A  R  K  *  W  K  D  Y  L  S  S  P  C  Y  C  R  S  T   : E  A  R  R  Q  C  N  A  C  *  C  *  A  C  F  *  S  C  I  L  Q  S  T  W  S  R  C  R  E  F  D  R  L  P  A  *  *  W  R  D  G  S  R  N :   R  R  P  D  V  *  I  R  C  R  R  S  H  L  H  *  F  S  L  S  P  Y  S  T  C  *  N  *   : G  R  N  R  D  A  A  N  G  F  T  S  T  P  D  E  S  S  F  T  *  N  V  R  Q  C  L  Q  S  W  M  Y  S  Y  I  P  Q  S  D  K  I  Q   : D  W  C  L  L  R  K  S  *  G  H  K  W  R  D  C  L  K  V  F  R  L  R  S  T  *  N  P  F  H  R  E  D  K  I   : C  K  R  R  R  G  S  G  Y  *  G  P  S  E  S  S  K  E  *   : G  F  *  T  I  Q  A  S  R  I  *  N  Y  V  W  R  R  S  E  Q  A   : G  L  C  I  R  L  C  G  T  D  *  G  G  G  *  E  R  F  M  V  *  L  R  R  A  *  :  A  G  T  G  K  R  E  S  I  A  I  F  E  R  K  S  S  S  L  *  R  N  R  K   : D  G  S  V  I  G  A  R  D  K  R  V  F  R  L  F  F  I  E  T  S  T  A  A  A  S  R  G  R  C  T  S  R  D  A  I  T  R  I  R  V  L  L  Q  L  I  M  I  T  E  H  F  S  A  N  I  D  I  H  M  *  F  Y  I  R  N  E  Q  S  W  G  H  C  Q  I  C  F  V  *  D  H  F  C  A  L  E  I  L  E  E  R  C  I  F  L  *  A  N  G  S  L  H  E  E  E  D  T  Y  I  L  N  *  P  N  *  R  I  R  V  K  V  V  K  R  S  V  S  S  L  L  H  I  L  S  L  F  W  L  Y  W  *  P  K  F  *  K  S  E  D  F  C  L  *  H  L  H  W  K  Y  H  S  S  V  A  L  V  L  L  S  H  *  L  Y  A  L  R  N  L  V  N  I  C   </second_frame>
            <third_frame>   G  A  M  E  L  R  R  Q  H  S  L  S  S  F  F  S  K  E  N  *  A  *  V  *  *  Y  L  S  I  R  L  N  F  V  V  Q  E  N  G  A  F  K  L  E  T  L  M  E  L  T  F  P  V  K  A  Q  L  F  G  S  K  I  G  H  K  S  L  S  Y  S  T  S  V  K  F  Y  Q  K  V  S  R  P  Q  F  S  A  C  G  I  R  V  R  S  E  F  D  H  K  I  N  G  A  F  S  P  D  S  D  A  R  I  L  D  R  :  Q  K  A  L  D  A  A  M  N  D  I  N  S  S  F  G  K  G  S  V  T  R  L  G  S  A  G  G  A  L  V :   E  T  F  P  S  G  C  L  T  L  D  F  A  L  G  G  G  I  P  K  G  R  I  V  E  :  I  Y  G  P  E  S  S  G  K  T  T  L  A  L  H  A  I  A  E  V  Q  :  K  L  G  G  N  A  M  L  V  D  A  E  H  A  F  D  P  A  Y  S  K  A  L  G  V  D  V  E  N  L  I  V  C  Q  P  D  N  G  E  M  A  L  E   : I  A  D  R  M  C  R  S  G  A  V  D  L  I  C  I  D  S  V  S  A  L  T  P  R  A  E  I  E  :  G  E  I  G  M  Q  Q  M  G  L  Q  A  R  L  M  S  Q  A  L  R  K  M  S  G  N  A  S  K  A  G  C  T  L  I  F  L  N  Q  I  R  Y  K  :  I  G  V  Y  Y  G  N  P  E  V  T  S  G  G  I  A  L  K  F  F  A  S  V  R  L  E  I  R  S  T  G  K  I  K  S  :  A  K  G  D  E  E  V  G  I  K  V  R  V  R  V  Q  K  S  K  :  V  S  R  P  Y  K  Q  A  E  F  E  I  M  F  G  E  G  V  S  K  L  :  G  C  V  L  D  C  A  E  L  I  E  V  V  A  K  K  G  S  W  Y  N  Y  G  E  H  R :   L  G  Q  G  R  E  K  A  L  Q  Y  L  R  E  N  P  L  L  S  E  E  I  E  K  :  M  V  R  S  S  V  L  E  T  N  G  F  L  G  S  S  S  L  K  H  P  L  P  Q  L  L  E  E  D  A  L  Q  E  M  Q  *  R  G  S  E  F  C  F  N  *  L  *  *  Q  S  I  F  Q  P  T  L  T  S  I  C  D  S  T  L  E  M  S  K  V  G  D  T  A  R  F  A  L  Y  E  T  I  S  V  H  *  R  F  L  K  K  G  V  Y  S  C  K  L  M  D  L  C  T  K  R  K  T  H  T  S  *  I  N  Q  T  E  E  L  E  L  R  W  *  K  G  V  L  A  L  C  C  I  F  C  L  C  F  G  C  T  G  S  Q  N  F  E  N  L  K  I  F  A  C  N  I  C  I  G  S  T  T  L  V  L  R  W  Y  Y  Y  P  I  S  S  M  H  *  E  I  *  *  I  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43993" stop="44259"/>
                    <exon start="44361" stop="44452"/>
                    <exon start="44648" stop="44723"/>
                    <exon start="45069" stop="45131"/>
                    <exon start="45445" stop="45574"/>
                    <exon start="45701" stop="45786"/>
                    <exon start="45877" stop="46002"/>
                    <exon start="46321" stop="46425"/>
                    <exon start="46515" stop="46571"/>
                    <exon start="46992" stop="47054"/>
                    <exon start="47128" stop="47204"/>
                    <exon start="47681" stop="47753"/>
                    <exon start="48183" stop="48290"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1320</number_coding_nucleotides>
                  <number_encoded_amino_acids>440</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLSIRLNFVVQENGAFKLETLMELTFPVKAQLFGSKIGHKSLSYSTSVKFYQKVSRPQFSACGIRVRSEFDHKINGAFSPDSDARILDRQKALDAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGIPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAVDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIKSAKGDEEVGIKVRVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAELIEVVAKKGSWYNYGEHRLGQGREKALQYLRENPLLSEEIEKMVRSSVLETNGFLGSSSLKHPLPQLLEEDALQEMQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="50360" PGL_stop="48056"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50360" e_stop="50209"/>
            <exon e_start="49596" e_stop="49538"/>
            <exon e_start="49381" e_stop="49326"/>
            <exon e_start="49249" e_stop="49197"/>
            <exon e_start="49085" e_stop="48853"/>
            <exon e_start="48585" e_stop="48563"/>
            <exon e_start="48119" e_stop="48056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.987"/>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="0.652"/>
          <exon-only e_score="0.469"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50360" e_stop="50209" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50208" i_stop="49597" i_length="612"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49596" e_stop="49538" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="49537" i_stop="49382" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49381" e_stop="49326" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49325" i_stop="49250" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49249" e_stop="49197" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49196" i_stop="49086" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="49085" e_stop="48853" e_length="233"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48852" i_stop="48586" i_length="267"/>
          </intron>
          <exon e_serial="6" e_score="0.652">
            <gDNA_exon_boundary e_start="48585" e_stop="48563" e_length="23"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48562" i_stop="48120" i_length="443"/>
          </intron>
          <exon e_serial="7" e_score="0.469">
            <gDNA_exon_boundary e_start="48119" e_stop="48056" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50360" stop="50209"/>
              <exon start="49596" stop="49538"/>
              <exon start="49381" stop="49326"/>
              <exon start="49249" stop="49197"/>
              <exon start="49085" stop="48853"/>
              <exon start="48585" stop="48563"/>
              <exon start="48119" stop="48056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49226" stop="49197"/>
              <exon start="49085" stop="48868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338947" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCAAGCACAGTAATGAGCTCATTGAGCCTAAAGCCAACTTTCACTCTGGAGAAAATATCAGTGAAAGGGCTTCCATCACTTACTAGATCTTCTTCTTCCTTCAAAGTTGTGGCTAGTGGTGTTAAGAAGCTTAAGACTGACAAACCCTATG : GAATTAATGGAAGCATGGCCTTGAGAGATGGGGTTGATGCCTCAGGCAGGAAGCCCAAG : GGAAAGGGTGTGTACCAATATGTTGACAAATATGGAGCTAATGTTGATGGATACAG : TCCCATCTACAACACGGATGAATGGTCTCCAAGTGGTGATGTCTATGTTGGAG : GTACCACTGGCTTAGCCATATGGGCGGTGACCTTGCTTGGCATTCTTGCAGGAGGTGCTCTCCTTGTCTACAACACAAGTGCTTTGGCGCAATAGATGTTATCCTTGTATTGTACTATTAAGTTTAAGTTGTATTCCATGTTATCTTTTCAAAATATTTCTTGGCATCTTCATTAATATGTAATTGCTGTGATTTTACTGTGGATAATATTACATCTAATGTTGCTGTTTTAG : AAAGACAAAATATGCAGCAAAGA : AAATCTCTCAATATGTTAATCTAATAACTACGATATAAAAGAATATTATCTTCGTGTATAGGTA</gDNA_template>
            <first_frame> G  K  H  S  N  E  L  I  E  P  K  A  N  F  H  S  G  E  N  I  S  E  R  A  S  I  T  Y  *  I  F  F  F  L  Q  S  C  G  *  W  C  *  E  A  *  D  *  Q  T  L  W :   N  *  W  K  H  G  L  E  R  W  G  *  C  L  R  Q  E  A  Q   : G  K  G  C  V  P  I  C  *  Q  I  W  S  *  C  *  W  I  Q  :  S  H  L  Q  H  G  *  M  V  S  K  W  *  C  L  C  W  R :   Y  H  W  L  S  H  M  G  G  D  L  A  W  H  S  C  R  R  C  S  P  C  L  Q  H  K  C  F  G  A  I  D  V  I  L  V  L  Y  Y  *  V  *  V  V  F  H  V  I  F  S  K  Y  F  L  A  S  S  L  I  C  N  C  C  D  F  T  V  D  N  I  T  S  N  V  A  V  L   : E  R  Q  N  M  Q  Q  R  :  K  S  L  N  M  L  I  *  *  L  R  Y  K  R  I  L  S  S  C  I  G  </first_frame>
            <second_frame>  A  S  T  V  M  S  S  L  S  L  K  P  T  F  T  L  E  K  I  S  V  K  G  L  P  S  L  T  R  S  S  S  S  F  K  V  V  A  S  G  V  K  K  L  K  T  D  K  P  Y   : G  I  N  G  S  M  A  L  R  D  G  V  D  A  S  G  R  K  P  K  :  G  K  G  V  Y  Q  Y  V  D  K  Y  G  A  N  V  D  G  Y  S :   P  I  Y  N  T  D  E  W  S  P  S  G  D  V  Y  V  G   : G  T  T  G  L  A  I  W  A  V  T  L  L  G  I  L  A  G  G  A  L  L  V  Y  N  T  S  A  L  A  Q  *  M  L  S  L  Y  C  T  I  K  F  K  L  Y  S  M  L  S  F  Q  N  I  S  W  H  L  H  *  Y  V  I  A  V  I  L  L  W  I  I  L  H  L  M  L  L  F  *  :  K  D  K  I  C  S  K  E :   N  L  S  I  C  *  S  N  N  Y  D  I  K  E  Y  Y  L  R  V  *  V </second_frame>
            <third_frame>   Q  A  Q  *  *  A  H  *  A  *  S  Q  L  S  L  W  R  K  Y  Q  *  K  G  F  H  H  L  L  D  L  L  L  P  S  K  L  W  L  V  V  L  R  S  L  R  L  T  N  P  M  :  E  L  M  E  A  W  P  *  E  M  G  L  M  P  Q  A  G  S  P  R :   E  R  V  C  T  N  M  L  T  N  M  E  L  M  L  M  D  T   : V  P  S  T  T  R  M  N  G  L  Q  V  V  M  S  M  L  E  :  V  P  L  A  *  P  Y  G  R  *  P  C  L  A  F  L  Q  E  V  L  S  L  S  T  T  Q  V  L  W  R  N  R  C  Y  P  C  I  V  L  L  S  L  S  C  I  P  C  Y  L  F  K  I  F  L  G  I  F  I  N  M  *  L  L  *  F  Y  C  G  *  Y  Y  I  *  C  C  C  F  R :   K  T  K  Y  A  A  K   : K  I  S  Q  Y  V  N  L  I  T  T  I  *  K  N  I  I  F  V  Y  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50359" stop="50209"/>
                    <exon start="49596" stop="49538"/>
                    <exon start="49381" stop="49326"/>
                    <exon start="49249" stop="49197"/>
                    <exon start="49085" stop="48991"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASTVMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="53918" PGL_stop="52380"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53918" e_stop="53221"/>
            <exon e_start="53124" e_stop="52940"/>
            <exon e_start="52736" e_stop="52380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.527" acc_prob="0.985" e_score="0.934"/>
          <exon-intron don_prob="0.985" acc_prob="0.896" e_score="1.000"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="53918" e_stop="53221" e_length="698"/>
          </exon>
          <intron i_serial="1" don_prob="0.527" acc_prob="0.985">
            <gDNA_intron_boundary i_start="53220" i_stop="53125" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53124" e_stop="52940" e_length="185"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.896">
            <gDNA_intron_boundary i_start="52939" i_stop="52737" i_length="203"/>
          </intron>
          <exon e_serial="3" e_score="0.950">
            <gDNA_exon_boundary e_start="52736" e_stop="52380" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53918" stop="53221"/>
              <exon start="53124" stop="53096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53361" stop="53221"/>
              <exon start="53124" stop="52940"/>
              <exon start="52736" stop="52380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344998" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGTTGCCTCTGTATCTTCTTTTTTTTCCTTGGTAAAGATATTTATTAAAAATGGTATCAAGATGGCACAGAAAAGACTACATGACCTAAACTACACCACTCGCTCCAAACATACTACATATTTTCCCCTAATAAGTTTAAAAAACCCACTTCCATCACCTCCAACGGAAAGAGGAATTTTATCCATCAAAGAAAACCAAAAATCCAGCAAGTGTCTAGTAAATGGAGCAAAGAAAGAGCATCCCCATAACTTAACCATCCTATCAAGAGTACAACTATTAGTACAAACATACAAATTCTTGATGCATTTGTTTCTGACTCTGGGTATCTGCAGCCTCCGTATCTCCTTTTAGACCCATTTTATTCCAAGCTGACGTGATGTGTAGTGGAAGTTTCCTAACAGATTCAACCTTTTAGGAGATTCATCATAGCTAGATGGTTTTCATGATGCTGCTCTACCTACCTGTACATTTCCTTTAATGCATGCTTTCAATGATGTCAAAACTACAGCAATTGCTCCATCCTAGGTGGGGGGGGGGGGGGGGGGGGAGCTCTAAAATGGTTTCCTTTCTCTTGCTTCCTATTCTTTCTTCTTTGTGTTGGTGGGTGGTTTAGGAGGTGAAGGGGAGCAGCGTGGTTGAGACCGAGACTATCAGGTGGCTAAGTTTCCTTGTGGTGGTCTTGATTCTTCATCAAG : GTGGCAAAGATAGTTTGGCTCTAAAAATAGATACGGTACTGGCCTTCTGTGATGAAATGTGCTTGAAGGACAGAGCTTCTATCCAAGAAGACGGCAATCCACATCACAAAGAGTTTGGCTTGATTCAACCAATGAGCGGAAGGAGATTGTCCAAAGCTGTACACACTCCATGATGTGCGTGCCAG : GTGGATTTCATGCTGGAGTTACTGTAAATAGGGTTGGATTTGTACATTTTTGCGAGAGTGATCTGCATTCCAGCCCCCTCTGAAGCACAGGAGTCAGCTGCATTTCAAATGATTACCCAATTACAGACTATGGCAGACCACACCCATTACATTTAATGATGGCAAAGAAACAGCAACACCAATATTTTTGAATCCTATTAATGGCTACCATACCATAGTACTGTATTAGTTTCATTACTTTCCAGAAGCAACTGTTATGTGTGTCTTTGAGCTGAATTTGTTGTCTTAGAATATTAGTTGGTTGCAACCCGTATCAGTGCTTTGAACATTTATCAAGGCCAAATACATACGGTGCCT</gDNA_template>
            <first_frame> L  V  A  S  V  S  S  F  F  S  L  V  K  I  F  I  K  N  G  I  K  M  A  Q  K  R  L  H  D  L  N  Y  T  T  R  S  K  H  T  T  Y  F  P  L  I  S  L  K  N  P  L  P  S  P  P  T  E  R  G  I  L  S  I  K  E  N  Q  K  S  S  K  C  L  V  N  G  A  K  K  E  H  P  H  N  L  T  I  L  S  R  V  Q  L  L  V  Q  T  Y  K  F  L  M  H  L  F  L  T  L  G  I  C  S  L  R  I  S  F  *  T  H  F  I  P  S  *  R  D  V  *  W  K  F  P  N  R  F  N  L  L  G  D  S  S  *  L  D  G  F  H  D  A  A  L  P  T  C  T  F  P  L  M  H  A  F  N  D  V  K  T  T  A  I  A  P  S  *  V  G  G  G  G  G  G  E  L  *  N  G  F  L  S  L  A  S  Y  S  F  F  F  V  L  V  G  G  L  G  G  E  G  E  Q  R  G  *  D  R  D  Y  Q  V  A  K  F  P  C  G  G  L  D  S  S  S  R :   W  Q  R  *  F  G  S  K  N  R  Y  G  T  G  L  L  *  *  N  V  L  E  G  Q  S  F  Y  P  R  R  R  Q  S  T  S  Q  R  V  W  L  D  S  T  N  E  R  K  E  I  V  Q  S  C  T  H  S  M  M  C  V  P   : G  G  F  H  A  G  V  T  V  N  R  V  G  F  V  H  F  C  E  S  D  L  H  S  S  P  L  *  S  T  G  V  S  C  I  S  N  D  Y  P  I  T  D  Y  G  R  P  H  P  L  H  L  M  M  A  K  K  Q  Q  H  Q  Y  F  *  I  L  L  M  A  T  I  P  *  Y  C  I  S  F  I  T  F  Q  K  Q  L  L  C  V  S  L  S  *  I  C  C  L  R  I  L  V  G  C  N  P  Y  Q  C  F  E  H  L  S  R  P  N  T  Y  G  A  </first_frame>
            <second_frame>  *  L  P  L  Y  L  L  F  F  P  W  *  R  Y  L  L  K  M  V  S  R  W  H  R  K  D  Y  M  T  *  T  T  P  L  A  P  N  I  L  H  I  F  P  *  *  V  *  K  T  H  F  H  H  L  Q  R  K  E  E  F  Y  P  S  K  K  T  K  N  P  A  S  V  *  *  M  E  Q  R  K  S  I  P  I  T  *  P  S  Y  Q  E  Y  N  Y  *  Y  K  H  T  N  S  *  C  I  C  F  *  L  W  V  S  A  A  S  V  S  P  F  R  P  I  L  F  Q  A  D  V  M  C  S  G  S  F  L  T  D  S  T  F  *  E  I  H  H  S  *  M  V  F  M  M  L  L  Y  L  P  V  H  F  L  *  C  M  L  S  M  M  S  K  L  Q  Q  L  L  H  P  R  W  G  G  G  G  G  G  S  S  K  M  V  S  F  L  L  L  P  I  L  S  S  L  C  W  W  V  V  *  E  V  K  G  S  S  V  V  E  T  E  T  I  R  W  L  S  F  L  V  V  V  L  I  L  H  Q   : G  G  K  D  S  L  A  L  K  I  D  T  V  L  A  F  C  D  E  M  C  L  K  D  R  A  S  I  Q  E  D  G  N  P  H  H  K  E  F  G  L  I  Q  P  M  S  G  R  R  L  S  K  A  V  H  T  P  *  C  A  C  Q  :  V  D  F  M  L  E  L  L  *  I  G  L  D  L  Y  I  F  A  R  V  I  C  I  P  A  P  S  E  A  Q  E  S  A  A  F  Q  M  I  T  Q  L  Q  T  M  A  D  H  T  H  Y  I  *  *  W  Q  R  N  S  N  T  N  I  F  E  S  Y  *  W  L  P  Y  H  S  T  V  L  V  S  L  L  S  R  S  N  C  Y  V  C  L  *  A  E  F  V  V  L  E  Y  *  L  V  A  T  R  I  S  A  L  N  I  Y  Q  G  Q  I  H  T  V  P </second_frame>
            <third_frame>   S  C  L  C  I  F  F  F  F  L  G  K  D  I  Y  *  K  W  Y  Q  D  G  T  E  K  T  T  *  P  K  L  H  H  S  L  Q  T  Y  Y  I  F  S  P  N  K  F  K  K  P  T  S  I  T  S  N  G  K  R  N  F  I  H  Q  R  K  P  K  I  Q  Q  V  S  S  K  W  S  K  E  R  A  S  P  *  L  N  H  P  I  K  S  T  T  I  S  T  N  I  Q  I  L  D  A  F  V  S  D  S  G  Y  L  Q  P  P  Y  L  L  L  D  P  F  Y  S  K  L  T  *  C  V  V  E  V  S  *  Q  I  Q  P  F  R  R  F  I  I  A  R  W  F  S  *  C  C  S  T  Y  L  Y  I  S  F  N  A  C  F  Q  *  C  Q  N  Y  S  N  C  S  I  L  G  G  G  G  G  G  G  G  A  L  K  W  F  P  F  S  C  F  L  F  F  L  L  C  V  G  G  W  F  R  R  *  R  G  A  A  W  L  R  P  R  L  S  G  G  *  V  S  L  W  W  S  *  F  F  I  K  :  V  A  K  I  V  W  L  *  K  *  I  R  Y  W  P  S  V  M  K  C  A  *  R  T  E  L  L  S  K  K  T  A  I  H  I  T  K  S  L  A  *  F  N  Q  *  A  E  G  D  C  P  K  L  Y  T  L  H  D  V  R  A  R :   W  I  S  C  W  S  Y  C  K  *  G  W  I  C  T  F  L  R  E  *  S  A  F  Q  P  P  L  K  H  R  S  Q  L  H  F  K  *  L  P  N  Y  R  L  W  Q  T  T  P  I  T  F  N  D  G  K  E  T  A  T  P  I  F  L  N  P  I  N  G  Y  H  T  I  V  L  Y  *  F  H  Y  F  P  E  A  T  V  M  C  V  F  E  L  N  L  L  S  *  N  I  S  W  L  Q  P  V  S  V  L  *  T  F  I  K  A  K  Y  I  R  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53918" stop="53565"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVASVSSFFSLVKIFIKNGIKMAQKRLHDLNYTTRSKHTTYFPLISLKNPLPSPPTERGILSIKENQKSSKCLVNGAKKEHPHNLTILSRVQLLVQTYKFLMHLFLTLGICSLRISF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53302" stop="53221"/>
                    <exon start="53124" stop="52952"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVKGSSVVETETIRWLSFLVVVLILHQGGKDSLALKIDTVLAFCDEMCLKDRASIQEDGNPHHKEFGLIQPMSGRRLSKAVHTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="77734" PGL_stop="77977"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77734" e_stop="77977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="77734" e_stop="77977" e_length="244"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77734" stop="77977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCACCCTTTCCAGACTATGTGGGATTACACTAAGATATGTTGTATCCTAATTATCCAGCAGCATTTATCTATTGCAACGCCAAGTTTTGAGTTAGATCCTTTGAATTGATTAGGAGGAACAAAACTGAGCAAATCTTTGTACATCTGATGATCCTGCCTGGACTTGGACTACTTGAGGTGTAATAAATTTCAGAGAAAAAAAATTGTACTCTTCTGTGCAATGCAGTTGTAGGACAATTCAT</gDNA_template>
            <first_frame> N  H  P  F  Q  T  M  W  D  Y  T  K  I  C  C  I  L  I  I  Q  Q  H  L  S  I  A  T  P  S  F  E  L  D  P  L  N  *  L  G  G  T  K  L  S  K  S  L  Y  I  *  *  S  C  L  D  L  D  Y  L  R  C  N  K  F  Q  R  K  K  I  V  L  F  C  A  M  Q  L  *  D  N  S  </first_frame>
            <second_frame>  T  T  L  S  R  L  C  G  I  T  L  R  Y  V  V  S  *  L  S  S  S  I  Y  L  L  Q  R  Q  V  L  S  *  I  L  *  I  D  *  E  E  Q  N  *  A  N  L  C  T  S  D  D  P  A  W  T  W  T  T  *  G  V  I  N  F  R  E  K  K  L  Y  S  S  V  Q  C  S  C  R  T  I  H </second_frame>
            <third_frame>   P  P  F  P  D  Y  V  G  L  H  *  D  M  L  Y  P  N  Y  P  A  A  F  I  Y  C  N  A  K  F  *  V  R  S  F  E  L  I  R  R  N  K  T  E  Q  I  F  V  H  L  M  I  L  P  G  L  G  L  L  E  V  *  *  I  S  E  K  K  N  C  T  L  L  C  N  A  V  V  G  Q  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0179K09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="80770" PGL_stop="79247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80770" e_stop="80104"/>
            <exon e_start="79421" e_stop="79247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.772" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80770" e_stop="80104" e_length="667"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.772">
            <gDNA_intron_boundary i_start="80103" i_stop="79422" i_length="682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79421" e_stop="79247" e_length="175"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80770" stop="80104"/>
              <exon start="79421" stop="79247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGAAGTTGAGCTTCATTCGACCAATTTCATGTTGCTCTGTTTCATCTCCAGCAACCTCAGTGAAACCTCAAAAACCTATATTTTTAAGGCCACCCACCTTCAAAACAACCATATCAGACCTTCAAAAATGGCATCATTGGGCTAAATCCCTAATTTCTTCTGTGGGTTCCACTTTCTTGGAACTGGACAATGGTCCAGACTCCGAATTGTTGCTCAGGGAGCTAAATTGGCTTGTTGAAGATGCAATTGAAACACCAAAATCTTTCTTGCAACAACCCCACAAAAATTACAATGATAATAGCTCAGTTGCAGTTCGGGCGTCTTTGGAACAACTGTATATGTTGTGGAAACGAAGGGTAGAAGAAAGAATGCCATTTCAGTATGTGGTTGGCTGTGAACATTGGAGGGATTTGGTTTTGAGTGTTCAAGAAGGGGTTTTGATTCCAAGGCCAGAGACTGAGCTGATTGTGGACCTTGTCGATGATGCTATTAAGGAGAATGGGGAATTGAGGGAAGGATTGTGGGCTGATTTGGGGACTGGAAGTGGTGCACTTGCTATTGGGATTGCAAGGATTTTGGGTACTTCTGGTAGAGTTGTTGCTACTGATTTAAGCCCTGTTGCTACTGCAGTTGCATCTTATAATGTGCAGAGGTATGATTTGGAG : GAAAAAGTGCATGTAAAGCAAGGATCTTGGTTTGAACCTTTGAGAGATAATGAAGGAGAATTTGTGGGACTGGTCAGTAATCCACCATATATTCCAAGCAAAGATATTGGTGGACTACAAGCTGAAGTTGGCAGACATGAACCTAGACTGGCGTTAGACGGTGGAGCAAGTGGTA</gDNA_template>
            <first_frame> N  E  V  E  L  H  S  T  N  F  M  L  L  C  F  I  S  S  N  L  S  E  T  S  K  T  Y  I  F  K  A  T  H  L  Q  N  N  H  I  R  P  S  K  M  A  S  L  G  *  I  P  N  F  F  C  G  F  H  F  L  G  T  G  Q  W  S  R  L  R  I  V  A  Q  G  A  K  L  A  C  *  R  C  N  *  N  T  K  I  F  L  A  T  T  P  Q  K  L  Q  *  *  *  L  S  C  S  S  G  V  F  G  T  T  V  Y  V  V  E  T  K  G  R  R  K  N  A  I  S  V  C  G  W  L  *  T  L  E  G  F  G  F  E  C  S  R  R  G  F  D  S  K  A  R  D  *  A  D  C  G  P  C  R  *  C  Y  *  G  E  W  G  I  E  G  R  I  V  G  *  F  G  D  W  K  W  C  T  C  Y  W  D  C  K  D  F  G  Y  F  W  *  S  C  C  Y  *  F  K  P  C  C  Y  C  S  C  I  L  *  C  A  E  V  *  F  G   : G  K  S  A  C  K  A  R  I  L  V  *  T  F  E  R  *  *  R  R  I  C  G  T  G  Q  *  S  T  I  Y  S  K  Q  R  Y  W  W  T  T  S  *  S  W  Q  T  *  T  *  T  G  V  R  R  W  S  K  W   </first_frame>
            <second_frame>  M  K  L  S  F  I  R  P  I  S  C  C  S  V  S  S  P  A  T  S  V  K  P  Q  K  P  I  F  L  R  P  P  T  F  K  T  T  I  S  D  L  Q  K  W  H  H  W  A  K  S  L  I  S  S  V  G  S  T  F  L  E  L  D  N  G  P  D  S  E  L  L  L  R  E  L  N  W  L  V  E  D  A  I  E  T  P  K  S  F  L  Q  Q  P  H  K  N  Y  N  D  N  S  S  V  A  V  R  A  S  L  E  Q  L  Y  M  L  W  K  R  R  V  E  E  R  M  P  F  Q  Y  V  V  G  C  E  H  W  R  D  L  V  L  S  V  Q  E  G  V  L  I  P  R  P  E  T  E  L  I  V  D  L  V  D  D  A  I  K  E  N  G  E  L  R  E  G  L  W  A  D  L  G  T  G  S  G  A  L  A  I  G  I  A  R  I  L  G  T  S  G  R  V  V  A  T  D  L  S  P  V  A  T  A  V  A  S  Y  N  V  Q  R  Y  D  L  E  :  E  K  V  H  V  K  Q  G  S  W  F  E  P  L  R  D  N  E  G  E  F  V  G  L  V  S  N  P  P  Y  I  P  S  K  D  I  G  G  L  Q  A  E  V  G  R  H  E  P  R  L  A  L  D  G  G  A  S  G  </second_frame>
            <third_frame>   *  S  *  A  S  F  D  Q  F  H  V  A  L  F  H  L  Q  Q  P  Q  *  N  L  K  N  L  Y  F  *  G  H  P  P  S  K  Q  P  Y  Q  T  F  K  N  G  I  I  G  L  N  P  *  F  L  L  W  V  P  L  S  W  N  W  T  M  V  Q  T  P  N  C  C  S  G  S  *  I  G  L  L  K  M  Q  L  K  H  Q  N  L  S  C  N  N  P  T  K  I  T  M  I  I  A  Q  L  Q  F  G  R  L  W  N  N  C  I  C  C  G  N  E  G  *  K  K  E  C  H  F  S  M  W  L  A  V  N  I  G  G  I  W  F  *  V  F  K  K  G  F  *  F  Q  G  Q  R  L  S  *  L  W  T  L  S  M  M  L  L  R  R  M  G  N  *  G  K  D  C  G  L  I  W  G  L  E  V  V  H  L  L  L  G  L  Q  G  F  W  V  L  L  V  E  L  L  L  L  I  *  A  L  L  L  L  Q  L  H  L  I  M  C  R  G  M  I  W  R :   K  K  C  M  *  S  K  D  L  G  L  N  L  *  E  I  M  K  E  N  L  W  D  W  S  V  I  H  H  I  F  Q  A  K  I  L  V  D  Y  K  L  K  L  A  D  M  N  L  D  W  R  *  T  V  E  Q  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80769" stop="80104"/>
                    <exon start="79421" stop="79248"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKLSFIRPISCCSVSSPATSVKPQKPIFLRPPTFKTTISDLQKWHHWAKSLISSVGSTFLELDNGPDSELLLRELNWLVEDAIETPKSFLQQPHKNYNDNSSVAVRASLEQLYMLWKRRVEERMPFQYVVGCEHWRDLVLSVQEGVLIPRPETELIVDLVDDAIKENGELREGLWADLGTGSGALAIGIARILGTSGRVVATDLSPVATAVASYNVQRYDLEEKVHVKQGSWFEPLRDNEGEFVGLVSNPPYIPSKDIGGLQAEVGRHEPRLALDGGASG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="81013" PGL_stop="86047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81013" e_stop="81073"/>
            <exon e_start="83076" e_stop="83454"/>
            <exon e_start="83528" e_stop="83657"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.782" e_score="0.951"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.984"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="81013" e_stop="81073" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.782">
            <gDNA_intron_boundary i_start="81074" i_stop="83075" i_length="2002"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="83076" e_stop="83454" e_length="379"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83528" e_stop="83657" e_length="130"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81013" stop="81073"/>
              <exon start="83076" stop="83454"/>
              <exon start="83528" stop="83657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGCTACTCCTGCTCAGTTCTGGCCAGTGATCAGTGCTCGCTCCCGAGTTACGCTGTTAAG : AGTGCACACTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG : GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTA</gDNA_template>
            <first_frame> P  L  L  L  L  S  S  G  Q  *  S  V  L  A  P  E  L  R  C  *   : E  C  T  L  D  L  A  S  S  S  S  A  L  S  A  N  L  R  I  S  P  T  R  L  S  P  L  R  R  S  L  A  L  T  S  P  S  V  A  G  K  P  L  F  C  S  H  P  H  Q  R  N  S  V  L  S  T  N  F  S  R  S  Q  F  R  T  K  S  S  M  A  E  T  V  S  G  E  S  K  A  E  V  K  V  Y  D  S  D  E  E  L  A  V  A  L  A  K  Y  T  A  D  L  S  E  K  F  C  K  E  R  D  V  F  T  V  V  V  S  G  G  S  L  I  K  S  L  R :   K  L  V  E  P  P  Y  I  D  S  I  D  W  S  K  W  H  V  F  W  V  D  E  R  V  V  P  K  D  H  P  D  S  N  Y  L  L  A  Y  D  G  F  L </first_frame>
            <second_frame>  R  Y  S  C  S  V  L  A  S  D  Q  C  S  L  P  S  Y  A  V  K  :  S  A  H  W  T  *  P  P  L  L  P  L  S  L  L  T  C  A  S  H  L  P  D  C  L  L  S  D  D  L  L  H  *  P  L  R  P  L  L  E  S  H  F  S  A  P  T  R  I  R  G  T  Q  C  *  V  Q  I  S  R  D  L  S  S  E  P  N  H  Q  W  L  R  Q  C  L  G  K  V  K  R  K  *  K  C  T  I  P  M  R  N  L  L  W  L  *  R  S  T  L  L  I  Y  R  R  N  F  V  R  R  E  M  F  L  L  W  L  F  P  V  V  H  L  S  S  L  S   : G  N  W  W  S  H  H  I  L  I  Q  *  T  G  P  N  G  T  F  S  G  W  M  R  E  W  F  Q  R  I  I  L  T  A  I  I  C  L  L  M  M  V  F   </second_frame>
            <third_frame>   A  T  P  A  Q  F  W  P  V  I  S  A  R  S  R  V  T  L  L  R :   V  H  T  G  L  S  L  L  F  F  R  S  L  C  *  L  A  H  L  T  Y  P  I  V  S  S  P  T  I  S  C  I  D  L  S  V  R  C  W  K  A  T  F  L  L  P  P  A  S  E  E  L  S  V  E  Y  K  F  L  E  I  S  V  Q  N  Q  I  I  N  G  *  D  S  V  W  G  K  *  S  G  S  E  S  V  R  F  R  *  G  T  C  C  G  S  S  E  V  H  C  *  F  I  G  E  I  L  *  G  E  R  C  F  Y  C  G  C  F  R  W  F  T  Y  Q  V  S  Q  :  E  I  G  G  A  T  I  Y  *  F  N  R  L  V  Q  M  A  R  F  L  G  G  *  E  S  G  S  K  G  S  S  *  Q  Q  L  F  A  C  L  *  W  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81073" stop="83454"/>
                    <exon start="83528" stop="83657"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECTLDLASSSSALSANLRISPTRLSPLRRSLALTSPSVAGKPLFCSHPHQRNSVLSTNFSRSQFRTKSSMAETVSGESKAEVKVYDSDEELAVALAKYTADLSEKFCKERDVFTVVVSGGSLIKSLRKLVEPPYIDSIDWSKWHVFWVDERVVPKDHPDSNYLLAYDGFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83035" e_stop="83454"/>
            <exon e_start="83528" e_stop="83663"/>
            <exon e_start="85332" e_stop="86047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.998"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="83035" e_stop="83454" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83455" i_stop="83527" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83528" e_stop="83663" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83664" i_stop="85331" i_length="1668"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85332" e_stop="86047" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83035" stop="83454"/>
              <exon start="83528" stop="83663"/>
              <exon start="85332" stop="86047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACACTAATACATTTATAATATAGTTTTATTACATGGCAGAGTGCACACTGGACTTAGCCTCCTCTTCTTCCGCTCTCTCTGCTAACTTGCGCATCTCACCTACCCGATTGTCTCCTCTCCGACGATCTCTTGCATTGACCTCTCCGTCCGTTGCTGGAAAGCCACTTTTCTGCTCCCACCCGCATCAGAGGAACTCAGTGTTGAGTACAAATTTCTCGAGATCTCAGTTCAGAACCAAATCATCAATGGCTGAGACAGTGTCTGGGGAAAGTAAAGCGGAAGTGAAAGTGTACGATTCCGATGAGGAACTTGCTGTGGCTCTAGCGAAGTACACTGCTGATTTATCGGAGAAATTTTGTAAGGAGAGAGATGTTTTTACTGTGGTTGTTTCCGGTGGTTCACTTATCAAGTCTCTCAG : GAAATTGGTGGAGCCACCATATATTGATTCAATAGACTGGTCCAAATGGCACGTTTTCTGGGTGGATGAGAGAGTGGTTCCAAAGGATCATCCTGACAGCAATTATTTGCTTGCTTATGATGGTTTTCTATCCAAG : ATACCTATTCCTGCTGGTAATGTGCATGCCATAAATGATGCATTATCAGCAGAGGCTGCGGCAGATGATTACGAGACTTGTCTAAGGCACTTAGTCAAGAGCAAGATACTTGACATCTCTGAAGAGAGTGGGTTTCCAAAATTTGATGTAATGCTATTGGGTATGGGTCCAGACGGACATGTAGCTTCCTTGTTTCCCGGGCATCCTCTTGTCCATGAGAAAGCGAAGTGGGTCACCTTCATCAAGGATTCTCCAAAACCTCCACCGAACAGGATTACATTTACATTCCCTGTAATAAACTCATCTGCAAATATTGCACTTGCTATAGTAGGTGCTGGTAAGGCAGATGTAGTGCATAAATCGCTAGGTGATGATAAAAGTTCTGATTTGCTGCCTGTGCAGATGGTTTCACCTGAAGGAGAATTAGTTTGGTTTTTAGACAAGGATGCAGCTTCGAAGCTGTAAGGATGAGGATATGTGAGCTGCGTATTTGTGCTTCACTCCTCTGTGTATTTTATTATTCTAATAATACATTCTGAAGAAGGGTTGTCTGTAAAATGTTATGCCATTTTTTTCTCACTTGTTTCTGTAAGGATCCTTGACTATGAGGAACTTGGTACTAAAACTACAGTTTATTCTCCTATTACTATATTTTATCTATACAAGTTAGGCATGTGTACAGATTGTTTGCTTCAGCAATAACACAAGTGACAGCT</gDNA_template>
            <first_frame> L  H  *  Y  I  Y  N  I  V  L  L  H  G  R  V  H  T  G  L  S  L  L  F  F  R  S  L  C  *  L  A  H  L  T  Y  P  I  V  S  S  P  T  I  S  C  I  D  L  S  V  R  C  W  K  A  T  F  L  L  P  P  A  S  E  E  L  S  V  E  Y  K  F  L  E  I  S  V  Q  N  Q  I  I  N  G  *  D  S  V  W  G  K  *  S  G  S  E  S  V  R  F  R  *  G  T  C  C  G  S  S  E  V  H  C  *  F  I  G  E  I  L  *  G  E  R  C  F  Y  C  G  C  F  R  W  F  T  Y  Q  V  S  Q  :  E  I  G  G  A  T  I  Y  *  F  N  R  L  V  Q  M  A  R  F  L  G  G  *  E  S  G  S  K  G  S  S  *  Q  Q  L  F  A  C  L  *  W  F  S  I  Q   : D  T  Y  S  C  W  *  C  A  C  H  K  *  C  I  I  S  R  G  C  G  R  *  L  R  D  L  S  K  A  L  S  Q  E  Q  D  T  *  H  L  *  R  E  W  V  S  K  I  *  C  N  A  I  G  Y  G  S  R  R  T  C  S  F  L  V  S  R  A  S  S  C  P  *  E  S  E  V  G  H  L  H  Q  G  F  S  K  T  S  T  E  Q  D  Y  I  Y  I  P  C  N  K  L  I  C  K  Y  C  T  C  Y  S  R  C  W  *  G  R  C  S  A  *  I  A  R  *  *  *  K  F  *  F  A  A  C  A  D  G  F  T  *  R  R  I  S  L  V  F  R  Q  G  C  S  F  E  A  V  R  M  R  I  C  E  L  R  I  C  A  S  L  L  C  V  F  Y  Y  S  N  N  T  F  *  R  R  V  V  C  K  M  L  C  H  F  F  L  T  C  F  C  K  D  P  *  L  *  G  T  W  Y  *  N  Y  S  L  F  S  Y  Y  Y  I  L  S  I  Q  V  R  H  V  Y  R  L  F  A  S  A  I  T  Q  V  T  A </first_frame>
            <second_frame>  Y  T  N  T  F  I  I  *  F  Y  Y  M  A  E  C  T  L  D  L  A  S  S  S  S  A  L  S  A  N  L  R  I  S  P  T  R  L  S  P  L  R  R  S  L  A  L  T  S  P  S  V  A  G  K  P  L  F  C  S  H  P  H  Q  R  N  S  V  L  S  T  N  F  S  R  S  Q  F  R  T  K  S  S  M  A  E  T  V  S  G  E  S  K  A  E  V  K  V  Y  D  S  D  E  E  L  A  V  A  L  A  K  Y  T  A  D  L  S  E  K  F  C  K  E  R  D  V  F  T  V  V  V  S  G  G  S  L  I  K  S  L  R :   K  L  V  E  P  P  Y  I  D  S  I  D  W  S  K  W  H  V  F  W  V  D  E  R  V  V  P  K  D  H  P  D  S  N  Y  L  L  A  Y  D  G  F  L  S  K  :  I  P  I  P  A  G  N  V  H  A  I  N  D  A  L  S  A  E  A  A  A  D  D  Y  E  T  C  L  R  H  L  V  K  S  K  I  L  D  I  S  E  E  S  G  F  P  K  F  D  V  M  L  L  G  M  G  P  D  G  H  V  A  S  L  F  P  G  H  P  L  V  H  E  K  A  K  W  V  T  F  I  K  D  S  P  K  P  P  P  N  R  I  T  F  T  F  P  V  I  N  S  S  A  N  I  A  L  A  I  V  G  A  G  K  A  D  V  V  H  K  S  L  G  D  D  K  S  S  D  L  L  P  V  Q  M  V  S  P  E  G  E  L  V  W  F  L  D  K  D  A  A  S  K  L  *  G  *  G  Y  V  S  C  V  F  V  L  H  S  S  V  Y  F  I  I  L  I  I  H  S  E  E  G  L  S  V  K  C  Y  A  I  F  F  S  L  V  S  V  R  I  L  D  Y  E  E  L  G  T  K  T  T  V  Y  S  P  I  T  I  F  Y  L  Y  K  L  G  M  C  T  D  C  L  L  Q  Q  *  H  K  *  Q   </second_frame>
            <third_frame>   T  L  I  H  L  *  Y  S  F  I  T  W  Q  S  A  H  W  T  *  P  P  L  L  P  L  S  L  L  T  C  A  S  H  L  P  D  C  L  L  S  D  D  L  L  H  *  P  L  R  P  L  L  E  S  H  F  S  A  P  T  R  I  R  G  T  Q  C  *  V  Q  I  S  R  D  L  S  S  E  P  N  H  Q  W  L  R  Q  C  L  G  K  V  K  R  K  *  K  C  T  I  P  M  R  N  L  L  W  L  *  R  S  T  L  L  I  Y  R  R  N  F  V  R  R  E  M  F  L  L  W  L  F  P  V  V  H  L  S  S  L  S   : G  N  W  W  S  H  H  I  L  I  Q  *  T  G  P  N  G  T  F  S  G  W  M  R  E  W  F  Q  R  I  I  L  T  A  I  I  C  L  L  M  M  V  F  Y  P  R :   Y  L  F  L  L  V  M  C  M  P  *  M  M  H  Y  Q  Q  R  L  R  Q  M  I  T  R  L  V  *  G  T  *  S  R  A  R  Y  L  T  S  L  K  R  V  G  F  Q  N  L  M  *  C  Y  W  V  W  V  Q  T  D  M  *  L  P  C  F  P  G  I  L  L  S  M  R  K  R  S  G  S  P  S  S  R  I  L  Q  N  L  H  R  T  G  L  H  L  H  S  L  *  *  T  H  L  Q  I  L  H  L  L  *  *  V  L  V  R  Q  M  *  C  I  N  R  *  V  M  I  K  V  L  I  C  C  L  C  R  W  F  H  L  K  E  N  *  F  G  F  *  T  R  M  Q  L  R  S  C  K  D  E  D  M  *  A  A  Y  L  C  F  T  P  L  C  I  L  L  F  *  *  Y  I  L  K  K  G  C  L  *  N  V  M  P  F  F  S  H  L  F  L  *  G  S  L  T  M  R  N  L  V  L  K  L  Q  F  I  L  L  L  L  Y  F  I  Y  T  S  *  A  C  V  Q  I  V  C  F  S  N  N  T  S  D  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83060" stop="83454"/>
                    <exon start="83528" stop="83663"/>
                    <exon start="85332" stop="85796"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYYMAECTLDLASSSSALSANLRISPTRLSPLRRSLALTSPSVAGKPLFCSHPHQRNSVLSTNFSRSQFRTKSSMAETVSGESKAEVKVYDSDEELAVALAKYTADLSEKFCKERDVFTVVVSGGSLIKSLRKLVEPPYIDSIDWSKWHVFWVDERVVPKDHPDSNYLLAYDGFLSKIPIPAGNVHAINDALSAEAAADDYETCLRHLVKSKILDISEESGFPKFDVMLLGMGPDGHVASLFPGHPLVHEKAKWVTFIKDSPKPPPNRITFTFPVINSSANIALAIVGAGKADVVHKSLGDDKSSDLLPVQMVSPEGELVWFLDKDAASKL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85803" stop="86033"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYVSCVFVLHSSVYFIILIIHSEEGLSVKCYAIFFSLVSVRILDYEELGTKTTVYSPITIFYLYKLGMCTDCLLQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="88278" PGL_stop="92420"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88278" e_stop="88851"/>
            <exon e_start="89756" e_stop="90133"/>
            <exon e_start="90946" e_stop="91063"/>
            <exon e_start="91183" e_stop="91406"/>
            <exon e_start="91569" e_stop="92420"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.890" e_score="0.998"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="0.989"/>
          <exon-intron don_prob="0.067" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="88278" e_stop="88851" e_length="574"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.890">
            <gDNA_intron_boundary i_start="88852" i_stop="89755" i_length="904"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="89756" e_stop="90133" e_length="378"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90134" i_stop="90945" i_length="812"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90946" e_stop="91063" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.067" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91064" i_stop="91182" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91183" e_stop="91406" e_length="224"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="91407" i_stop="91568" i_length="162"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91569" e_stop="92420" e_length="852"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88278" stop="88851"/>
              <exon start="89756" stop="90133"/>
              <exon start="90946" stop="91063"/>
              <exon start="91183" stop="91406"/>
              <exon start="91569" stop="92420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321429" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTTTATTATATCTGAATGAATCTCTCTATCACTTTCTGCCATTATTTTTGCTTGTAATCTTTAGGGTTTTCAGCTTCAATCTTTTGGATCCAGCAATTTGCTTGTTTCAATTTCTCTTTGTTTCAGTATTGAATTCTTCGAGTGTTGTTTCATTTCTTAGTAATTTCATTTTTTTTCTTCTTTGAGTTGAATCTCAGTGAATTCTTGCAGGAGACATATTTGTTTAATTATTCTGAGGTGTTTGATAAATTTCCTCAGAGAGAGAACGCAGATTTTTAAGGGGGAATGGGAATTTGTTACTCTTCAAGTAAAAGCAAGAGCGATGATGGGTTGTGGGATGGTAAGAATGACAGCAGAAGGTTTGATTACAAGTTGAAGAAGAACAGTTATAGTGGCGATTTCAGCTCATTTTTAAGCAAGTTAAGTGGTGTTGGTGGAGGAGGGGGTGAGGACAAGGGGCTGCATCATATTCCCGGAAGGATTTTGGGGAATGGAGCCACCTCCCGTGCTTGCCTACACACTCAGCAAGGGAAAAAAGGAACGAATCAAGATGCCATGATCATTTGGGAG : AATTTTTGCTCGCGAAGTGATACGATCTTTTGCGGAGTATTTGATGGACACGGTCCCTATGGCCATATGGTGGCAAGGAAAGTTCGAGATACTCTTCCGTTTCTCCTGTGTTCAGAGTGGCAAGTTAAATCCGGTGGTGATCAAAGTAATACTTCTGAGACAGGAAATACCAACGGAGGTTCACATCTTGATGATGTCTTGGATGATGATTTGATTGAAGCTATGGAAGCTGAGAACAATGAAAAGTTCCCAGAAATACATCTTCCCCTTAAAAGATCAATGTTAAAAGCTTTCCGGTCGATGGATAAAGAACTCAAGTTGCACCCTTCTATTGATTGTTTCTGTAGTGGATCAACTGCTGTTTCCTTGGTGATGCAG : GGCCAGGATATAATTGTTGGCAATGTTGGTGACTCAAGAGCAGTATTGGCAACTAGAGATAAAGACAACTATTTAATGGCTGTACAGTTGACAGTAGATTTGAAGCCTAATCTTCCAA : GAGAAGCTGCTAGAATACATAAATACAAAGGCAGGGTTTTTGCATTGCAAGATGAGCCAGAGGTTGCGCGTGTATGGTTGCCGAACAGTGACTCTCCTGGCTTGGCAATGGCCAGAGCATTTGGTGATTTTTGTCTCAAGGATTTTGGGTTAATTTCTGTCCCTGATGTGTATTACCACCGCATAACTGATAGGAACGAATTTGTTGTTCTAGCAACTGATGGG : GTTTGGGATGTACTTTCTAATAAGGAAGCCGTGGATATTGTGGCCTCCGCACCAAGTCGCGCAACAGCTGCCCGAGCTCTTGTTGACTGTGCGACAAGAGCTTGGAGGCTGAAGTACCCGACATCAAAAACTGATGATTGTGCTGTAGTATGCCTTTTCCTGGACCGTGTACCTGCACCTGATTCTGTAGTCACAGCGAGGCAACATGATTTGACAAAGGCTCCTGAAGTGGAAATAAAGACGATTATTACTGATGGCAACCTTGAAAGTGCAGATAGTAATGCTACTCATATTGCAGTTCGTGAACATTCAGTTACTACAATAGACGCCAGTGAGATAGTTCCTGTTGACGAATCAATAGAAGAACAGCTAGCGGATAAGGGTCTTGGACATTCTAAGAGAAGCCTAGCCGAGTGCCTTTCAACTGCAGAAGATCAGGAATGGTCAGCCCTCGAGGGAGTAACCAGGGTTAATAGCCTTCTTAGTCTTCCTAGATTTATGTCTGGTGACAAAAAATCAGCCAGTCGGAGGAAATGGTTGTAAGACATCAAGGCATGATACCTCAAGGGCCAAGGCTAATGTAAGTGCTTTGTATTAGCTGTTCTTCTCAAAGATTCTGTAAATCAAAACACTGTAGCAGCAGTAGTAGTATAAAAGACTAAGTGCTGGATCATTGCCTGGAATGTAAAACAGCCTGTGCTTGATGACTATCCAAATTGGCAATGCTTTTTGGTAGAATATTTATGATTGATGAGAACAACGCGAGGCCTCAGACAGAAATAGTAACATTTTCTTGTGCTGTGTAGTATTTTACTTTCATGTCCAAGATGGAATCCCCTCTGGTGCATGTTT</gDNA_template>
            <first_frame> F  L  L  L  Y  L  N  E  S  L  Y  H  F  L  P  L  F  L  L  V  I  F  R  V  F  S  F  N  L  L  D  P  A  I  C  L  F  Q  F  L  F  V  S  V  L  N  S  S  S  V  V  S  F  L  S  N  F  I  F  F  L  L  *  V  E  S  Q  *  I  L  A  G  D  I  F  V  *  L  F  *  G  V  *  *  I  S  S  E  R  E  R  R  F  L  R  G  N  G  N  L  L  L  F  K  *  K  Q  E  R  *  W  V  V  G  W  *  E  *  Q  Q  K  V  *  L  Q  V  E  E  E  Q  L  *  W  R  F  Q  L  I  F  K  Q  V  K  W  C  W  W  R  R  G  *  G  Q  G  A  A  S  Y  S  R  K  D  F  G  E  W  S  H  L  P  C  L  P  T  H  S  A  R  E  K  R  N  E  S  R  C  H  D  H  L  G   : E  F  L  L  A  K  *  Y  D  L  L  R  S  I  *  W  T  R  S  L  W  P  Y  G  G  K  E  S  S  R  Y  S  S  V  S  P  V  F  R  V  A  S  *  I  R  W  *  S  K  *  Y  F  *  D  R  K  Y  Q  R  R  F  T  S  *  *  C  L  G  *  *  F  D  *  S  Y  G  S  *  E  Q  *  K  V  P  R  N  T  S  S  P  *  K  I  N  V  K  S  F  P  V  D  G  *  R  T  Q  V  A  P  F  Y  *  L  F  L  *  W  I  N  C  C  F  L  G  D  A   : G  P  G  Y  N  C  W  Q  C  W  *  L  K  S  S  I  G  N  *  R  *  R  Q  L  F  N  G  C  T  V  D  S  R  F  E  A  *  S  S  K :   R  S  C  *  N  T  *  I  Q  R  Q  G  F  C  I  A  R  *  A  R  G  C  A  C  M  V  A  E  Q  *  L  S  W  L  G  N  G  Q  S  I  W  *  F  L  S  Q  G  F  W  V  N  F  C  P  *  C  V  L  P  P  H  N  *  *  E  R  I  C  C  S  S  N  *  W   : G  L  G  C  T  F  *  *  G  S  R  G  Y  C  G  L  R  T  K  S  R  N  S  C  P  S  S  C  *  L  C  D  K  S  L  E  A  E  V  P  D  I  K  N  *  *  L  C  C  S  M  P  F  P  G  P  C  T  C  T  *  F  C  S  H  S  E  A  T  *  F  D  K  G  S  *  S  G  N  K  D  D  Y  Y  *  W  Q  P  *  K  C  R  *  *  C  Y  S  Y  C  S  S  *  T  F  S  Y  Y  N  R  R  Q  *  D  S  S  C  *  R  I  N  R  R  T  A  S  G  *  G  S  W  T  F  *  E  K  P  S  R  V  P  F  N  C  R  R  S  G  M  V  S  P  R  G  S  N  Q  G  *  *  P  S  *  S  S  *  I  Y  V  W  *  Q  K  I  S  Q  S  E  E  M  V  V  R  H  Q  G  M  I  P  Q  G  P  R  L  M  *  V  L  C  I  S  C  S  S  Q  R  F  C  K  S  K  H  C  S  S  S  S  S  I  K  D  *  V  L  D  H  C  L  E  C  K  T  A  C  A  *  *  L  S  K  L  A  M  L  F  G  R  I  F  M  I  D  E  N  N  A  R  P  Q  T  E  I  V  T  F  S  C  A  V  *  Y  F  T  F  M  S  K  M  E  S  P  L  V  H  V  </first_frame>
            <second_frame>  F  F  Y  Y  I  *  M  N  L  S  I  T  F  C  H  Y  F  C  L  *  S  L  G  F  S  A  S  I  F  W  I  Q  Q  F  A  C  F  N  F  S  L  F  Q  Y  *  I  L  R  V  L  F  H  F  L  V  I  S  F  F  F  F  F  E  L  N  L  S  E  F  L  Q  E  T  Y  L  F  N  Y  S  E  V  F  D  K  F  P  Q  R  E  N  A  D  F  *  G  G  M  G  I  C  Y  S  S  S  K  S  K  S  D  D  G  L  W  D  G  K  N  D  S  R  R  F  D  Y  K  L  K  K  N  S  Y  S  G  D  F  S  S  F  L  S  K  L  S  G  V  G  G  G  G  G  E  D  K  G  L  H  H  I  P  G  R  I  L  G  N  G  A  T  S  R  A  C  L  H  T  Q  Q  G  K  K  G  T  N  Q  D  A  M  I  I  W  E  :  N  F  C  S  R  S  D  T  I  F  C  G  V  F  D  G  H  G  P  Y  G  H  M  V  A  R  K  V  R  D  T  L  P  F  L  L  C  S  E  W  Q  V  K  S  G  G  D  Q  S  N  T  S  E  T  G  N  T  N  G  G  S  H  L  D  D  V  L  D  D  D  L  I  E  A  M  E  A  E  N  N  E  K  F  P  E  I  H  L  P  L  K  R  S  M  L  K  A  F  R  S  M  D  K  E  L  K  L  H  P  S  I  D  C  F  C  S  G  S  T  A  V  S  L  V  M  Q  :  G  Q  D  I  I  V  G  N  V  G  D  S  R  A  V  L  A  T  R  D  K  D  N  Y  L  M  A  V  Q  L  T  V  D  L  K  P  N  L  P   : R  E  A  A  R  I  H  K  Y  K  G  R  V  F  A  L  Q  D  E  P  E  V  A  R  V  W  L  P  N  S  D  S  P  G  L  A  M  A  R  A  F  G  D  F  C  L  K  D  F  G  L  I  S  V  P  D  V  Y  Y  H  R  I  T  D  R  N  E  F  V  V  L  A  T  D  G  :  V  W  D  V  L  S  N  K  E  A  V  D  I  V  A  S  A  P  S  R  A  T  A  A  R  A  L  V  D  C  A  T  R  A  W  R  L  K  Y  P  T  S  K  T  D  D  C  A  V  V  C  L  F  L  D  R  V  P  A  P  D  S  V  V  T  A  R  Q  H  D  L  T  K  A  P  E  V  E  I  K  T  I  I  T  D  G  N  L  E  S  A  D  S  N  A  T  H  I  A  V  R  E  H  S  V  T  T  I  D  A  S  E  I  V  P  V  D  E  S  I  E  E  Q  L  A  D  K  G  L  G  H  S  K  R  S  L  A  E  C  L  S  T  A  E  D  Q  E  W  S  A  L  E  G  V  T  R  V  N  S  L  L  S  L  P  R  F  M  S  G  D  K  K  S  A  S  R  R  K  W  L  *  D  I  K  A  *  Y  L  K  G  Q  G  *  C  K  C  F  V  L  A  V  L  L  K  D  S  V  N  Q  N  T  V  A  A  V  V  V  *  K  T  K  C  W  I  I  A  W  N  V  K  Q  P  V  L  D  D  Y  P  N  W  Q  C  F  L  V  E  Y  L  *  L  M  R  T  T  R  G  L  R  Q  K  *  *  H  F  L  V  L  C  S  I  L  L  S  C  P  R  W  N  P  L  W  C  M  F </second_frame>
            <third_frame>   S  F  I  I  S  E  *  I  S  L  S  L  S  A  I  I  F  A  C  N  L  *  G  F  Q  L  Q  S  F  G  S  S  N  L  L  V  S  I  S  L  C  F  S  I  E  F  F  E  C  C  F  I  S  *  *  F  H  F  F  S  S  L  S  *  I  S  V  N  S  C  R  R  H  I  C  L  I  I  L  R  C  L  I  N  F  L  R  E  R  T  Q  I  F  K  G  E  W  E  F  V  T  L  Q  V  K  A  R  A  M  M  G  C  G  M  V  R  M  T  A  E  G  L  I  T  S  *  R  R  T  V  I  V  A  I  S  A  H  F  *  A  S  *  V  V  L  V  E  E  G  V  R  T  R  G  C  I  I  F  P  E  G  F  W  G  M  E  P  P  P  V  L  A  Y  T  L  S  K  G  K  K  E  R  I  K  M  P  *  S  F  G  R :   I  F  A  R  E  V  I  R  S  F  A  E  Y  L  M  D  T  V  P  M  A  I  W  W  Q  G  K  F  E  I  L  F  R  F  S  C  V  Q  S  G  K  L  N  P  V  V  I  K  V  I  L  L  R  Q  E  I  P  T  E  V  H  I  L  M  M  S  W  M  M  I  *  L  K  L  W  K  L  R  T  M  K  S  S  Q  K  Y  I  F  P  L  K  D  Q  C  *  K  L  S  G  R  W  I  K  N  S  S  C  T  L  L  L  I  V  S  V  V  D  Q  L  L  F  P  W  *  C  R :   A  R  I  *  L  L  A  M  L  V  T  Q  E  Q  Y  W  Q  L  E  I  K  T  T  I  *  W  L  Y  S  *  Q  *  I  *  S  L  I  F  Q  :  E  K  L  L  E  Y  I  N  T  K  A  G  F  L  H  C  K  M  S  Q  R  L  R  V  Y  G  C  R  T  V  T  L  L  A  W  Q  W  P  E  H  L  V  I  F  V  S  R  I  L  G  *  F  L  S  L  M  C  I  T  T  A  *  L  I  G  T  N  L  L  F  *  Q  L  M  G :   F  G  M  Y  F  L  I  R  K  P  W  I  L  W  P  P  H  Q  V  A  Q  Q  L  P  E  L  L  L  T  V  R  Q  E  L  G  G  *  S  T  R  H  Q  K  L  M  I  V  L  *  Y  A  F  S  W  T  V  Y  L  H  L  I  L  *  S  Q  R  G  N  M  I  *  Q  R  L  L  K  W  K  *  R  R  L  L  L  M  A  T  L  K  V  Q  I  V  M  L  L  I  L  Q  F  V  N  I  Q  L  L  Q  *  T  P  V  R  *  F  L  L  T  N  Q  *  K  N  S  *  R  I  R  V  L  D  I  L  R  E  A  *  P  S  A  F  Q  L  Q  K  I  R  N  G  Q  P  S  R  E  *  P  G  L  I  A  F  L  V  F  L  D  L  C  L  V  T  K  N  Q  P  V  G  G  N  G  C  K  T  S  R  H  D  T  S  R  A  K  A  N  V  S  A  L  Y  *  L  F  F  S  K  I  L  *  I  K  T  L  *  Q  Q  *  *  Y  K  R  L  S  A  G  S  L  P  G  M  *  N  S  L  C  L  M  T  I  Q  I  G  N  A  F  W  *  N  I  Y  D  *  *  E  Q  R  E  A  S  D  R  N  S  N  I  F  L  C  C  V  V  F  Y  F  H  V  Q  D  G  I  P  S  G  A  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88561" stop="88851"/>
                    <exon start="89756" stop="90133"/>
                    <exon start="90946" stop="91063"/>
                    <exon start="91183" stop="91406"/>
                    <exon start="91569" stop="92111"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1551</number_coding_nucleotides>
                  <number_encoded_amino_acids>517</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGMGICYSSSKSKSDDGLWDGKNDSRRFDYKLKKNSYSGDFSSFLSKLSGVGGGGGEDKGLHHIPGRILGNGATSRACLHTQQGKKGTNQDAMIIWENFCSRSDTIFCGVFDGHGPYGHMVARKVRDTLPFLLCSEWQVKSGGDQSNTSETGNTNGGSHLDDVLDDDLIEAMEAENNEKFPEIHLPLKRSMLKAFRSMDKELKLHPSIDCFCSGSTAVSLVMQGQDIIVGNVGDSRAVLATRDKDNYLMAVQLTVDLKPNLPREAARIHKYKGRVFALQDEPEVARVWLPNSDSPGLAMARAFGDFCLKDFGLISVPDVYYHRITDRNEFVVLATDGVWDVLSNKEAVDIVASAPSRATAARALVDCATRAWRLKYPTSKTDDCAVVCLFLDRVPAPDSVVTARQHDLTKAPEVEIKTIITDGNLESADSNATHIAVREHSVTTIDASEIVPVDESIEEQLADKGLGHSKRSLAECLSTAEDQEWSALEGVTRVNSLLSLPRFMSGDKKSASRRKWL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="101815" PGL_stop="100087"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101815" e_stop="100087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101815" e_stop="100087" e_length="1729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101815" stop="100087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345261" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTGTCCTTCCCCCCAGGTCCCCTTTTTTTCCTTTCTCTCTCTCCTTTATTTCTCTTTTCATAAGCATATTCTTTCTCTCTCTAGGGTTTTCACTTTCACCTGAAATAGTGTTGTTAAATTGAATGATATGTTAGGATCCTTTGGTTCTTCATCATCTCAATCTCACCCTCATCATGATGAAGAATCTTCTGATCATCATCAACAGCGTAGATTCACCGCTACTGCTACAACTATCACCACCACCACCATCACTACCTCACCAGCTATTCAAATCCGCCAGCTACTCATTAGCTGTGCGGAGTTGATTTCGCAGTCCGATTTCTCGGCCGCGAAAAGACTCCTTACTATATTATCAACTAACTCATCTCCTTTTGGTGATTCAACTGAACGGTTAGTCCATCAATTTACTCGCGCACTTTCCCTTCGTCTCAACCGCTATATATCGTCAACCACCAATCATTTCATGACACCTGTTGAAACAACTCCAACTGATTCTTCTTCTTCGTCATCATTAGCTCTAATTCAATCATCATATCTATCTCTAAACCAAGTTACCCCTTTCATAAGGTTTACTCAATTAACCGCTAATCAAGCGATTTTAGAAGCGATTAACGGTAATCATCAAGCAATCCACATCGTTGATTTCGACATTAATCACGGGGTTCAATGGCCACCGTTAATGCAAGCACTAGCTGATCGTTACCCTGCTCCCACTCTTCGAATCACCGGTACTGGAAATGACCTTGATACCCTTCGTAGAACAGGTGATCGTTTAGCTAAATTTGCTCACTCATTAGGGTTGAGATTTCAATTCCATCCTCTTTATATAGCCAATAATAACCACGATCACGATGAAGATCCTTCTATTATTTCCTCCATTGTACTACTCCCTGATGAAACCCTAGCTATCAACTGTGTTTTCTACCTCCACCGCCTTTTAAAAGACCGCGAAAAGTTAAGGATTTTTTTGCATAGGGTTAAGTCAATGAACCCTAAAATTGTTACAATCGCGGAGAAGGAAGCAAATCATAACCATCCTCTTTTTTTACAAAGATTCATCGAGGCGTTGGATTATTATACAGCTGTGTTTGATTCACTGGAAGCTACATTGCCACCGGGTAGTCGAGAGAGGATGACAGTTGAACAAGTGTGGTTTGGGAGAGAGATTGTTGATATCGTTGCGATGGAAGGAGATAAAAGGAAAGAAAGACATGAAAGGTTTAGATCATGGGAAGTTATGTTGAGGAGTTGTGGATTTAGTAATGTTGCTTTAAGCCCTTTTGCATTATCACAAGCTAAGCTTCTTTTGAGACTTCATTATCCTTCTGAAGGCTATCAACTCGGAGTTTCGAGTAATTCTTTCTTCTTAGGTTGGCAAAATCAACCCCTTTTCTCCATCTCGTCTTGGCGTTGAGAAAAACTATCAAATAGCCAACTTCAGAGGGTAATTAAGACTACTGATAGTTTAGGAGGGATCTGAAGAAAACGCGTGGAGTGAAAACCCTAAATAACCAGATTTTCTAATGAAGTTGTAGTAGTAGAAATTTGCATGGTGAAGAACAATATTGAAGAGGTATTGAAATTTCATGTTTTTTTTGTTTTACTTATTGATATGAATGTTTTAAAATTTTTAACATAGAGGACTAGGTTGATGATATATAGTATTTAAGTTAACTAGTCTTTGTATAACGCAAGATCTTGATCAACTTATTTTTATTTTTAATTA</gDNA_template>
            <first_frame> P  L  S  F  P  P  G  P  L  F  F  L  S  L  S  P  L  F  L  F  S  *  A  Y  S  F  S  L  *  G  F  H  F  H  L  K  *  C  C  *  I  E  *  Y  V  R  I  L  W  F  F  I  I  S  I  S  P  S  S  *  *  R  I  F  *  S  S  S  T  A  *  I  H  R  Y  C  Y  N  Y  H  H  H  H  H  H  Y  L  T  S  Y  S  N  P  P  A  T  H  *  L  C  G  V  D  F  A  V  R  F  L  G  R  E  K  T  P  Y  Y  I  I  N  *  L  I  S  F  W  *  F  N  *  T  V  S  P  S  I  Y  S  R  T  F  P  S  S  Q  P  L  Y  I  V  N  H  Q  S  F  H  D  T  C  *  N  N  S  N  *  F  F  F  F  V  I  I  S  S  N  S  I  I  I  S  I  S  K  P  S  Y  P  F  H  K  V  Y  S  I  N  R  *  S  S  D  F  R  S  D  *  R  *  S  S  S  N  P  H  R  *  F  R  H  *  S  R  G  S  M  A  T  V  N  A  S  T  S  *  S  L  P  C  S  H  S  S  N  H  R  Y  W  K  *  P  *  Y  P  S  *  N  R  *  S  F  S  *  I  C  S  L  I  R  V  E  I  S  I  P  S  S  L  Y  S  Q  *  *  P  R  S  R  *  R  S  F  Y  Y  F  L  H  C  T  T  P  *  *  N  P  S  Y  Q  L  C  F  L  P  P  P  P  F  K  R  P  R  K  V  K  D  F  F  A  *  G  *  V  N  E  P  *  N  C  Y  N  R  G  E  G  S  K  S  *  P  S  S  F  F  T  K  I  H  R  G  V  G  L  L  Y  S  C  V  *  F  T  G  S  Y  I  A  T  G  *  S  R  E  D  D  S  *  T  S  V  V  W  E  R  D  C  *  Y  R  C  D  G  R  R  *  K  E  R  K  T  *  K  V  *  I  M  G  S  Y  V  E  E  L  W  I  *  *  C  C  F  K  P  F  C  I  I  T  S  *  A  S  F  E  T  S  L  S  F  *  R  L  S  T  R  S  F  E  *  F  F  L  L  R  L  A  K  S  T  P  F  L  H  L  V  L  A  L  R  K  T  I  K  *  P  T  S  E  G  N  *  D  Y  *  *  F  R  R  D  L  K  K  T  R  G  V  K  T  L  N  N  Q  I  F  *  *  S  C  S  S  R  N  L  H  G  E  E  Q  Y  *  R  G  I  E  I  S  C  F  F  C  F  T  Y  *  Y  E  C  F  K  I  F  N  I  E  D  *  V  D  D  I  *  Y  L  S  *  L  V  F  V  *  R  K  I  L  I  N  L  F  L  F  L  I  </first_frame>
            <second_frame>  L  C  P  S  P  Q  V  P  F  F  S  F  L  S  L  L  Y  F  S  F  H  K  H  I  L  S  L  S  R  V  F  T  F  T  *  N  S  V  V  K  L  N  D  M  L  G  S  F  G  S  S  S  S  Q  S  H  P  H  H  D  E  E  S  S  D  H  H  Q  Q  R  R  F  T  A  T  A  T  T  I  T  T  T  T  I  T  T  S  P  A  I  Q  I  R  Q  L  L  I  S  C  A  E  L  I  S  Q  S  D  F  S  A  A  K  R  L  L  T  I  L  S  T  N  S  S  P  F  G  D  S  T  E  R  L  V  H  Q  F  T  R  A  L  S  L  R  L  N  R  Y  I  S  S  T  T  N  H  F  M  T  P  V  E  T  T  P  T  D  S  S  S  S  S  S  L  A  L  I  Q  S  S  Y  L  S  L  N  Q  V  T  P  F  I  R  F  T  Q  L  T  A  N  Q  A  I  L  E  A  I  N  G  N  H  Q  A  I  H  I  V  D  F  D  I  N  H  G  V  Q  W  P  P  L  M  Q  A  L  A  D  R  Y  P  A  P  T  L  R  I  T  G  T  G  N  D  L  D  T  L  R  R  T  G  D  R  L  A  K  F  A  H  S  L  G  L  R  F  Q  F  H  P  L  Y  I  A  N  N  N  H  D  H  D  E  D  P  S  I  I  S  S  I  V  L  L  P  D  E  T  L  A  I  N  C  V  F  Y  L  H  R  L  L  K  D  R  E  K  L  R  I  F  L  H  R  V  K  S  M  N  P  K  I  V  T  I  A  E  K  E  A  N  H  N  H  P  L  F  L  Q  R  F  I  E  A  L  D  Y  Y  T  A  V  F  D  S  L  E  A  T  L  P  P  G  S  R  E  R  M  T  V  E  Q  V  W  F  G  R  E  I  V  D  I  V  A  M  E  G  D  K  R  K  E  R  H  E  R  F  R  S  W  E  V  M  L  R  S  C  G  F  S  N  V  A  L  S  P  F  A  L  S  Q  A  K  L  L  L  R  L  H  Y  P  S  E  G  Y  Q  L  G  V  S  S  N  S  F  F  L  G  W  Q  N  Q  P  L  F  S  I  S  S  W  R  *  E  K  L  S  N  S  Q  L  Q  R  V  I  K  T  T  D  S  L  G  G  I  *  R  K  R  V  E  *  K  P  *  I  T  R  F  S  N  E  V  V  V  V  E  I  C  M  V  K  N  N  I  E  E  V  L  K  F  H  V  F  F  V  L  L  I  D  M  N  V  L  K  F  L  T  *  R  T  R  L  M  I  Y  S  I  *  V  N  *  S  L  Y  N  A  R  S  *  S  T  Y  F  Y  F  *  L </second_frame>
            <third_frame>   S  V  L  P  P  R  S  P  F  F  P  F  S  L  S  F  I  S  L  F  I  S  I  F  F  L  S  L  G  F  S  L  S  P  E  I  V  L  L  N  *  M  I  C  *  D  P  L  V  L  H  H  L  N  L  T  L  I  M  M  K  N  L  L  I  I  I  N  S  V  D  S  P  L  L  L  Q  L  S  P  P  P  P  S  L  P  H  Q  L  F  K  S  A  S  Y  S  L  A  V  R  S  *  F  R  S  P  I  S  R  P  R  K  D  S  L  L  Y  Y  Q  L  T  H  L  L  L  V  I  Q  L  N  G  *  S  I  N  L  L  A  H  F  P  F  V  S  T  A  I  Y  R  Q  P  P  I  I  S  *  H  L  L  K  Q  L  Q  L  I  L  L  L  R  H  H  *  L  *  F  N  H  H  I  Y  L  *  T  K  L  P  L  S  *  G  L  L  N  *  P  L  I  K  R  F  *  K  R  L  T  V  I  I  K  Q  S  T  S  L  I  S  T  L  I  T  G  F  N  G  H  R  *  C  K  H  *  L  I  V  T  L  L  P  L  F  E  S  P  V  L  E  M  T  L  I  P  F  V  E  Q  V  I  V  *  L  N  L  L  T  H  *  G  *  D  F  N  S  I  L  F  I  *  P  I  I  T  T  I  T  M  K  I  L  L  L  F  P  P  L  Y  Y  S  L  M  K  P  *  L  S  T  V  F  S  T  S  T  A  F  *  K  T  A  K  S  *  G  F  F  C  I  G  L  S  Q  *  T  L  K  L  L  Q  S  R  R  R  K  Q  I  I  T  I  L  F  F  Y  K  D  S  S  R  R  W  I  I  I  Q  L  C  L  I  H  W  K  L  H  C  H  R  V  V  E  R  G  *  Q  L  N  K  C  G  L  G  E  R  L  L  I  S  L  R  W  K  E  I  K  G  K  K  D  M  K  G  L  D  H  G  K  L  C  *  G  V  V  D  L  V  M  L  L  *  A  L  L  H  Y  H  K  L  S  F  F  *  D  F  I  I  L  L  K  A  I  N  S  E  F  R  V  I  L  S  S  *  V  G  K  I  N  P  F  S  P  S  R  L  G  V  E  K  N  Y  Q  I  A  N  F  R  G  *  L  R  L  L  I  V  *  E  G  S  E  E  N  A  W  S  E  N  P  K  *  P  D  F  L  M  K  L  *  *  *  K  F  A  W  *  R  T  I  L  K  R  Y  *  N  F  M  F  F  L  F  Y  L  L  I  *  M  F  *  N  F  *  H  R  G  L  G  *  *  Y  I  V  F  K  L  T  S  L  C  I  T  Q  D  L  D  Q  L  I  F  I  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0179K09.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101709" stop="100399"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1308</number_coding_nucleotides>
                  <number_encoded_amino_acids>436</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSVVKLNDMLGSFGSSSSQSHPHHDEESSDHHQQRRFTATATTITTTTITTSPAIQIRQLLISCAELISQSDFSAAKRLLTILSTNSSPFGDSTERLVHQFTRALSLRLNRYISSTTNHFMTPVETTPTDSSSSSSLALIQSSYLSLNQVTPFIRFTQLTANQAILEAINGNHQAIHIVDFDINHGVQWPPLMQALADRYPAPTLRITGTGNDLDTLRRTGDRLAKFAHSLGLRFQFHPLYIANNNHDHDEDPSIISSIVLLPDETLAINCVFYLHRLLKDREKLRIFLHRVKSMNPKIVTIAEKEANHNHPLFLQRFIEALDYYTAVFDSLEATLPPGSRERMTVEQVWFGREIVDIVAMEGDKRKERHERFRSWEVMLRSCGFSNVALSPFALSQAKLLLRLHYPSEGYQLGVSSNSFFLGWQNQPLFSISSWR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 41 chains have been computed
$ 
$ memory statistics:
$ 159512 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 8395 bytes was the average size of a spliced alignment
$ 24568 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1535 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 49 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 08:41:07
-->
