<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 23:46:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346789" ref_strand="+" ref_description="SGN-U346789        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to amino acid carrier, putative / amino acid permease, putative [Arabidopsis thaliana] (TAIR:At1g77380.1); similar to putative amino acid transport protein AAP2 [Oryza sativa (japonica cultivar-group)] (GB:AAL87189.1); contains InterPro domain Amino acid/polyamine transporter, family II (InterPro:IPR002422) | chr5:8028381-8030166 FORWARD | Aliases: None(evalue: 9e-60, score=227) genbank/nr: gi|15237834|ref|NP_197770.1| amino acid transporter family [Arabidopsis thaliana] gi|10176848|dbj|BAB10054.1| amino acid transporter [Arabidopsis thaliana](evalue: 5e-59, score=227)">
      <seq>ttcgtataaatttcatcaagcttgcaattatatatacaattacatccgcctccagcatacaagctatccagaaatcaaactgctatcatgatcaaggtcacaaggctacctgtggatatgaaagtactaggtatatggtaatatttggattaatccaagttatagtgtctcaaattcctgattttccgaatatgaagtggctctccgtagttgctgctgtcatgtccttcacatattcaattatcggatcagcacttggcttagccaaagtaatagaaaatggagaaatcaaaggaagcattacaggactgccaagttctacagctgctgagaaagtatggttggttgctcaagcgctcgggaacattgcctttgcctttccattctctcttatatttctggaggttcaggacacattaaaggcacctcctccagaaaagatcaccatgaagaaggtctcaattatgacatcctgtattacaacttttttctacctttgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="+" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="843" stop="3142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1143" g_stop="1203" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1204" i_stop="2173" i_length="970">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2174" g_stop="2388" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="276" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2389" i_stop="2526" i_length="138">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2527" g_stop="2660" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="410" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2661" i_stop="2749" i_length="89">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2750" g_stop="2842" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="503" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="+" ref_id="SGN-U346789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1143" e_stop="1203"/>
          <exon e_start="2174" e_stop="2388"/>
          <exon e_start="2527" e_stop="2660"/>
          <exon e_start="2750" e_stop="2842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTATAAATTTCATCAAGCTTGCAATTATATATACAATTACATCCGCCTCCAGCATACAGTATGTCATTGATCTTCTCTCTACTAGTATTATCAATGTCTCCTTCTGACAATTTATGCACGTACATTTCCTTTATGAGCTTTGCTGCTTATCATACTGAATTTTTGTTTGGGTTATCCTAGTTTACATGGTTGCATTTCCATACTATCAGACAACTTAATTTCCTCTTGCCAAATTCATGCTTCAGACCTATTATCTCCTCTAAAGTCCAGTGGCGGAGCCAAGAGTTTGGGAAAGAGTATGCAGATTTTCTTCTCAGTTGTGTTAAGGGTGTGCAAAATCAAACATACACTCATAATATCTCACAGTTAACATTTAACCTTTGTACACCACATAATATTTCAGCGAAGGGTGTGCACGGGACCATCCTTAGCCTAAGGTGGCCCAGCCAATGCTCTAAACTAATGAGGTTTTTATTTTACACTATCTTCTGAGATTCCTTTGACTGCTAACAGTTCATAAATAAACTTGTTAAGGATTCTTAAGGGTTCAAGAATTACCAAACAATATAGTCCGAACCGTACGAATCTAGCTATAAGCAGAGATTTGTATCCATGTCATCATTCTAATCAGATAACTAGAGGGGGATACAGAAGTATATGTCATAATTAGTGAAATTAGGATAGGTGTTCCATTATCAAGGAGATAAAAGTTCCATAACCAATGGGATTAGGAATATTAAAAAGGATACACAGTACTTAGTGTACATATAAAGTTGATATTGCTATCATATATTCTCAAAATTAAACTTACATTCGATGTATATTAGTGGATTAAGGGAATGTGTCCCTAAATGATTTTAGGAGTCCCATATAACCAATGAAATAAAGAATCATAGATAATAAGGCTATAATGCATAGCACATATACATAAGAATTGAGAGTTGTTACTCCTGTGCATTCTCAAACTATCTATTGGGAGGGTTTTTTCTAAAGCTGATATTAATAATGCATCCTCTAAATGCTTCCAGAGCTATCCAGAAATCAAACTGCTATCATGATCAAGGTCACAAGGCTACCTGTGGATATGAAAGTACTAGGTATATGGTAATATTTGGATTAATCCAAGTTATAGTGTCTCAAATTCCTGATTTTCCGAATATGAAGTGGCTCTCCGTAGTTGCTGCTGTCATGTCCTTCACATATTCAATTATCGGATCAGCACTTGGCTTAGCCAAAGTAATAGGTAGGTTACCTTTTTGCATGCTTTTAGAGTCCTAAAATCTTCACAATAACAAGCATGTTCAGGCCTAGAATCTCAGGTAATATAGATGATCAAACTTGTCATTATCTTAAAATTCCATTCCGCAATCTTGATATGCAGAAAATGGAGAAATCAAAGGAAGCATTACAGGACTGCCAAGTTCTACAGCTGCTGAGAAAGTATGGTTGGTTGCTCAAGCGCTCGGGAACATTGCCTTTGCCTTTCCATTCTCTCTTATATTTCTGGAGGTTCAGGTGCTGCAATTTGGCTTTCTAAATTAAATAATTTTCTTAATCAGCATTAAGCTGCACTAAACAATTAATGAAAACTTCCAAATATGTAGGACACATTAAAGGCACCTCCTCCAGAAAAGATCACCATGAAGAAGGTCTCAATTATGACATCCTGTATTACAACTTTTTTCTACCTTTGCTGT</genome_strand>
        <mrna_strand>TTCGTATAAATTTCATCAAGCTTGCAATTATATATACAATTACATCCGCCTCCAGCATACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATCCAGAAATCAAACTGCTATCATGATCAAGGTCACAAGGCTACCTGTGGATATGAAAGTACTAGGTATATGGTAATATTTGGATTAATCCAAGTTATAGTGTCTCAAATTCCTGATTTTCCGAATATGAAGTGGCTCTCCGTAGTTGCTGCTGTCATGTCCTTCACATATTCAATTATCGGATCAGCACTTGGCTTAGCCAAAGTAATAG..........................................................................................................................................AAAATGGAGAAATCAAAGGAAGCATTACAGGACTGCCAAGTTCTACAGCTGCTGAGAAAGTATGGTTGGTTGCTCAAGCGCTCGGGAACATTGCCTTTGCCTTTCCATTCTCTCTTATATTTCTGGAGGTTCAG.........................................................................................GACACATTAAAGGCACCTCCTCCAGAAAAGATCACCATGAAGAAGGTCTCAATTATGACATCCTGTATTACAACTTTTTTCTACCTTTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329993" ref_strand="+" ref_description="SGN-U329993        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | amino acid transporter family protein, similar to amino acid carrier (Ricinus communis) GI:3293031; contains Pfam profile PF01490: Transmembrane amino acid transporter protein | chr5:8028381-8030817 FORWARD | Aliases: MRO11.15, MRO11_15(evalue: 2e-05, score=43.9)">
      <seq>aactcagaaaagaattgaaagttggaaaagcaaagctatcatgcttcgcgtctttacaatggtatgtctggttgtgatattgtacgcatttgttgggtctatcagaggagttattgttgctaggttcaggtaaaaatgcttcttcacgtttctacaaggtttgcgtacatgctatcctctccgaacccccacttgtgagattatactagatatgttatttaaaaaagaaatgtaaataaattctttatagttttaaaatgttcggtatgtaaacaatgccttacgttgtcaacaaccaaatatgtattataaaatttcatcgattttcgtgtactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="+" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="3583" stop="4520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3883" g_stop="4220" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="339" polyA_stop="348"/>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="+" ref_id="SGN-U329993" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3883" e_stop="4220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCAGAAAAGAATTGAAAGTTGGAAAAGCAAAGCTATCATGCTTCGCGTCTTTACAATGGTATGTCTGGTTGTGATATTGTACGCATTTGTTGGGTCTATCAGAGGAGTTATTGTTGCTAGGTTCAGGTAAAAATGCTTCTTCACGTTTCTACAAGGTTTGCGTACATGCTATCCTCTCCGAACCCCCACTTGTGAGATTATACTAGATATGTTATTTAAAAAAGAAATGTAAATAAATTCTTTATAGTTTTAAAATGTTCGGTATGTAAACAATGCCTTACGTTGTCAACAACCAAATATGTATTATAAAATTTCATCGATTTTCGTGTACTATA</genome_strand>
        <mrna_strand>AACTCAGAAAAGAATTGAAAGTTGGAAAAGCAAAGCTATCATGCTTCGCGTCTTTACAATGGTATGTCTGGTTGTGATATTGTACGCATTTGTTGGGTCTATCAGAGGAGTTATTGTTGCTAGGTTCAGGTAAAAATGCTTCTTCACGTTTCTACAAGGTTTGCGTACATGCTATCCTCTCCGAACCCCCACTTGTGAGATTATACTAGATATGTTATTTAAAAAAGAAATGTAAATAAATTCTTTATAGTTTTAAAATGTTCGGTATGTAAACAATGCCTTACGTTGTCAACAACCAAATATGTATTATAAAATTTCATCGATTTTCGTGTACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318425" ref_strand="+" ref_description="SGN-U318425        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:4319654-4330068 REVERSE | Aliases: MDC11.16(evalue: 0, score=784) genbank/nr: gi|9294539|dbj|BAB02802.1| contains similarity to unknown protein~gb|AAF50915.1~gene_id:MDC11.16 [Arabidopsis thaliana](evalue: 0, score=784)">
      <seq>gataaatccaagtcttctctcgaagaagctttaagtaatatattccaggaagaggggtttttcaatgaaaccctgaatagtctttctcatgttcatataattgacactgatggtgcttcttctaaaggaaatcatggcacctcctcatttcagagtgtggctgacaaatccattactcgattttattttgaattttcttcatcatggccccgtactcccaattggatatctttgtttggaaatgacacattctactcaagctttgcccgaatttttaaacgtctagtacaggaatgtggtgctcctgttatactggcactaaaagatgcattagcagactacataaatgcaaaggagaggacaaagcagtgtgttgctgctgaggcaatggcaggtgtgctacattctgatgtttccggtgtttcagaagcatgggatagctggttgatgacccattttcagagtattattcaagcaccaacagttgagtccatacctgagtgggcagcttgtattcgttatgcagttactggaaaaggaaaacatggaacaaaaattccactcttgagacaaaaggtcatggactgtttaatgaaccccttgcctgaaacagttagtactactgtagttgccaagcgatacatgtttctttcagctgcactaatagaagtttccccaccaaaaatgccagttactgaactagcgcttcactataagcttcttgaagaattgcttggcagtatgagccattcatctccacaagtgagggaatccattggtgtcaccctctctgttttatgctcaaacattcggctccaggtgtcctgcaatcaagctcatccacatgaagtaggaacaagtaatgtgaacaggaaagttgaagcagggaattgggatcattatctagtagaacgtgcatctgagcttgtggtgaagatccaaagttttagccagtcagacactctggatgtgcaaacggacatgatttctgacaatggagtattaaccgaacagtctcatgatgatgttaaatggatggagacgctatttcatttcattatctcatctctaaagtcaggaagatcctcggttctgctggatgttgttgttggtcttttgtatcctgtaatatctctacaggagacgtcaaataaggatttgtcgacactggccaaaatagcttttgaattgctaaagtggagagtttattcagagtcccatttaaggaaagttgtgctcaccattctttctatagccaatgataccaattggcgtacaagatctacgactctgacctatttacggagtttcatgtataggcacactttcgtcctctctaaggtggacaaacaacaaatttggcaaactgtcgagaagctactcgcagataatcaagttgaggtaagggagcatgcggcagcagtcttggctggcctaatgaagggcggagatgaagatttagctcaggatttccgtcatagagcttatacagaagcaagtatcattcagaagaagaggaaacaaagaagcatgcgttctggattctctgtagcatccctacatggaaagatacttgctttggctgcttgcgtgctatcagttccttatgatattcccagttggttaccagaacaggttacactattggctcaatttgtttctgaatcatcacctgtaaaatctaccgtgacaaaagctgtggcagagtttcgacgcactcatgcggacacatggaatgttcagaaagattccttcactgaagaacaacttgaggtcctggctgatacatcatcatcctcatcatactttgcttgacattcatggtgtgccttacatgagagatagaattataccatatcatatatctcatatattgtaagtgggaagcttccaagtctaagttgaactacaaaaatgctcatacaattttttattaaaaattttgttctacaccaaaaattaaaagaaaaaacttttagacagaaaatcattcattttctacattgaatttgaacgtagaaaattgtgttgcatcttcccacaattgttaaatgtttatttcaattttaaggttttggtttttcatcttcaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="-" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="17917" stop="8945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17617" g_stop="16856" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16855" i_stop="15939" i_length="917">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15938" g_stop="15657" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="1044" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15656" i_stop="15580" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15579" g_stop="15484" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1045" r_stop="1140" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15483" i_stop="14032" i_length="1452">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14031" g_stop="13853" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1141" r_stop="1319" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13852" i_stop="13601" i_length="252">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13600" g_stop="13519" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1320" r_stop="1401" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13518" i_stop="12671" i_length="848">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12670" g_stop="12546" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1402" r_stop="1526" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12545" i_stop="11564" i_length="982">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11563" g_stop="11471" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1527" r_stop="1619" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="11470" i_stop="10148" i_length="1323">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.713" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="10147" g_stop="9994" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1620" r_stop="1773" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9993" i_stop="9602" i_length="392">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9601" g_stop="9324" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1774" r_stop="2049" r_length="276" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2091" polyA_stop="2112"/>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="-" ref_id="SGN-U318425" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2051</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17617" e_stop="16856"/>
          <exon e_start="15938" e_stop="15657"/>
          <exon e_start="15579" e_stop="15484"/>
          <exon e_start="14031" e_stop="13853"/>
          <exon e_start="13600" e_stop="13519"/>
          <exon e_start="12670" e_stop="12546"/>
          <exon e_start="11563" e_stop="11471"/>
          <exon e_start="10147" e_stop="9994"/>
          <exon e_start="9601" e_stop="9324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAATTCAAGTCTTCTCTCGAAGAAGCTTTAAGTAATATATTCCAGGAAGAGGGGTTTTTCAATGAAACCCTGAATAGTCTTTCTCATGTTCATATAATTGACACTGATGGTGCTTCTTCTAAAGGAAATCATGGCACCTCCTCATTTCAGAGTGTGGCTGACAAATCCATTACTCGATTTTATTTTGAATTTTCTTCATCATGGCCCCGTACTCCCAATTGGATATCTTTGTTTGGAAATGACACATTCTACTCAAGCTTTGCCCGAATTTTTAAACGTTTAGTACAGGAATGTGGTGCTCCTGTTATACTGGCACTAAAAGATGCATTAGCAGACTACATAAATGCAAAGGAGAGGACAAAGCAGTGTGTTGCTGCTGAGGCAGTGGCAGGTGTGCTACATTCTGATGTTTCCGGTGTTTCAGAAGCATGGGATAGCTGGTTGATGACCCATTTTCAGAGTATTATTCAAGCACCAACAGTTGAGTCCATACCTGAGTGGGCTGCTTGTATTCGTTATGCAGTTACTGGAAAAGGAAAACATGGAACAAAAATTCCACTCTTGAGACAAAAGGTCATGGACTGTTTAATGAACCCCTTGCCTGAAACAGTTAGTACTACTGTAGTTGCCAAGCGATACATGTTTCTTTCAGCTGCACTAATAGAAGTTTCCCCACCAAAAATGCCAGTTACTGAACTAGCGCTTCACTATAAGCTTCTTGAAGAATTGCTTGGCAGTATGAGCCATTCATCTCCACAAGTGAGTATTCAACGTTTCAATTTTCTGCTTAGGATCACAATTTATCATTTTCAGTTTCTCTATTATTTTTCTGGTTATGCTAAGAGTTGCTTGGTTACATGAGCCATTTGATATTTGATTTGATTGTCAAAGGAAGCATACGTTTATCTGTCGATCAACTCAAATCGCATACCTCTTTGATGAATTGCTTTGCTTGATAGGACTTTCCTTCTCGATCAGTTTTAGTTTTACAAGTTGAACTGGTTCTTCTCAGTTGTTCTACTGGAAAGACAAGCTTGTTAGTCTCAGCTTTTCCAGATCAATAGGTTCAGCTCTGAGCATCATTGTTGGGTCCCTTCTAAGATCTTCTAAAATATATTTTTCAATAACCTTTTTGCTCCTCATGGTTATGGATCCACATCTGATCTTGATCCCATTTTTTTTGTGCTTCCTCTCTTTTAATCTCGAAGGCATTATGGCCCCCACGTACATTCTCTTTGACCATTCTTCTTTTCAAGTTGTACATACATTGAGGCTATATCTTTGAGCTGATCTCGACTTCATAGTTTCATTACATTCCTTGTATCCAAAGTTGTTGAACTTTGAGGATCAAAAAGGTATTCTTTGACTCCTGTTCACCAAGAAAGATCTTTGACTACAACTTTTAATGTATAATGTCATCACTTATTTTGTTTTTGTTTAAGATTATTTTTTCATTTGTAAACGAGAACATTGTTACTTACTGTTCTTCATATCTAGTTTCTAACAAAAAGTTTATCTTTCAAAGACAAATTAATCTATGTTTAAGGGAAATTGATAAAATTGACCACCCCAGAAAAAGGAGTGGATCCTTTCACAGTTTCATCAATCTCCTTCAAAGTCTTCTGTAGAGTTTGTTGTTTCTGTGGTGACAGATAATGAAACAATTTCTGGAACAGGTGAGGGAATCCATTGGTGTCACCCTCTCTGTTTTATGCTCAAACATTCGGCTCCAGGTGTCCTGCAATCAAGCTCATCCACATGAAGTAGGAACAAGTAATGTGAACAGGAAAGTTGAAGCAGGGAATTGGGATCATTATCTAGTAGAACGTGCATCTGAGCTTGTGGTGAAGATCCAAAGTTTTAGCCAGTCAGACACTCTGGATGTGCAAACGGACATGATTTCTGACAATGGAGTATTAACCGAACAGTCTCATGATGATGTTAAATGGATGGAGACGGTACAGTCAGCCAACTCATCTATTGGGCTTTTTGCACCTAAGACCTTTTATTGATTACTTGTTTTGGTGATATGCAGCTATTTCATTTCATTATCTCATCTCTAAAGTCAGGAAGATCCTCGGTTCTGCTGGATGTTGTTGTTGGTCTTTTGTATCCTGTAATATCTCTACAGGTTAGTTGCAACATCACATCATTCCCGTTGCTTGTCTTTTCAGTTGTTTTGACATTTTGAAGGGATGAAATTACTGTCTGAAGAACTTGGCATATACACACTTTCCCTCCATTTACGGATGAAAATGGTAAATCTTGTAACTGAGGTCTCTTGGAGTTGGAGAAAAGAAACTTTGATTTTTGTTTTTTGTCAATTTCTGTGATTGAGATCTCTTAGAAGAACAAACTTTGACTTATGATTTTTGACAAATTGATAAGAAGCATCTTGTTTATCTCATGGTGATAAGGCTATACTTTTAAGTTTTCTGTAATTTTTCTTGTCTTCAACAGCTATTTCTTGCAGTTCCTCACATTTGGCTGGTTGTTCTTTTTTTACCAACTACATATTTGTACCATTGGAACTAGAGGTCTGCCTTTCTTAGGTAATGAGGATGGAGAAATCTATGAAGGCAGGATATTATTGGAAATAGATGATTGGATTTAGTTGTTTCCATAGTTGAAATATAAGAGGAACTTCTGTGAGCCAAGTTAATAGGCTGATAATGCTGAAATTACATGTTTTTCTTCTTCTTCATCTCATCATTTGGCGTCTAAGATAGTTTTTTGAGTTACTGCTTTTTAGCTTGTTCAAATTTTACAAATGAGTGTGTACGAAATGTTGTGACCTAAGAAAATAACTAATTATCTCCTCTCTTTAAGGACTTAAGATTTTAGATGAGGTGACACCAATCAGGTTTGATTTTCGTTCCAATTAGTCAACCTTACTTGCCTATAAGAGTTAAGCCTGCATATCGTGGTATTGATGAAATCTTTAAAGAAATAAATCTCTCAACTTTAACAACATAGCTTTTAGGGAAGGTATAGCCACATCGTAAGAACTATTGCATTAAACTGTTGTCACATAAACTTCTCCTTGCCGAATTTTGATTCTTATCTCTCTCCGAGTCTTTAACTAAACTGACCTTTTCCCTTAACTGACGGGAGCTACTGTATATCAACAAGAAAGGATTAAATCGAAAAGACTCCTGTTGAAGAGTTCCATTTTTGGATTAAATTCTGACTGCAAGGCATCTCCATTGTTAATTTCCTATGGTTTTATGCTTGGTACACGAGCCATAGCCATTGAACTTGTATCCTGTACAAAGAAGGAGAATTGTGAGTCTGTGCTCCCTTCATGTTTTGGTGATATTTCGGGTGTATATATTATCCCAGACCATATTAGATCTGCATGTTTCTAATTCTTTCGTTCAGTTTTTGTCTTGATTTATATCTACATATGAAGTAAGTCCTAGTTAATTTTGTTCAAACGAATGATACTGAAAATTTGAATTATTGACATTTTTTCAGCTGTTGCACACGTGAAGAAATTGATACACTATAAATTAATATATTCTCATTGGAGGTGTTTATAATAGAAGTGCATTTCTCTTTTGATACTGTTGATTTTTTGTAGGAGACGTCAAATAAGGATTTGTCGACACTGGCCAAAATAGCTTTTGAATTGCTAAAGTGGAGAGTTTATTCAGAGTCCCATTTAAGGAAAGTTGTGCTCACCATTCTTTCTATAGCCAATGATACCAATTGGCGTACAAGATCTACGACTCTGACCTATTTACGGAGTTTCATGTATAGGTATGATCTTTCCGTTTTGATCTTCCCTCCTCTCTCCTCCTTCGGTGAAAAAAAGTCATTTTGGTTCTTGAAGAGAAAATGAGGTACTTTGAAAGAAACAAGTATTGTTATCATCACTCTACACTGAATCATTGTTATTTTTATTTCAAACTCAGTCTTCAGGTGTTGCGGTGGTCTAGAATAGCTAAGTGATGCAAAAATAAACTTGTAATATCCTGAATAAATGAGTTGCTATCTTGTTGCACCATACAGGCACACTTTCGTCCTCTCTAAGGTGGACAAACAACAAATTTGGCAAACTGTCGAGAAGCTACTCGCAGATAATCAAGTTGAGGTAAGTTCACATAAATGTTAGCTGAAATATTTGCGGTATCAACTATGTAAATAATTAAAATGTTGTGCATTACCATATGATGTCTAGTCTTGGAGAAAGTAAGTGGATCTCTTGATGCTCTTTGCTTGTTTTGTTCAATGGTTGATATACAACAAATATATTATTGATTTCTCAAACCCCATATCCCTATAATAATGGTGAAGTAAGGGGTGGACCCAAAGGGAATTAACTGGTGGTTCTTGCTCGTAGCTTATTTAGGTAGCTTTTTTTGCCTTTTTAATTTCCTAAACTTACTGGATCATGTTTGATTACATAGAAGAGGAAAGGCTAGGATAATATACAATTTACCTCTTTGTCTATCCTATCATATGTTTGATGCACCAAAAGACAACCTTTTTTCAAAGATCACTCCTGCTTATCCTATGTCAGTATGTCTTGTTTAATTCTTTATAGTATTATCAAAGTCATCCATTTCTTATGGCCGTTCCTCTTCTATTGCTGTAGCCTGTAAGTGTGTCATGTGCTTAATATAGGACCATGAACTTATAGGTAGTAGATGTTATGTGTTTGATTGTAGACCTTTTTCAACCCTTCCTGTTCTGATCTAGTGAGATTATTATGCTTTTAAGTTGCTTGGTGTCTGAAAGTTTTTTAGTTTGAACGTACAATTGATTATCGCACCCCCATTTACTTAAGGCTTCATGCTCCCATTACTAAGTGGTGGTTCAAGTAGTCATTTAATATCCTTTCGATGATAAAAATAGCTTTAGTTCTCCCTGATTACTTAAATATGGAGATTATGGTGATTTAAAGAAGCTCATTTGAATTCTTCTGAATATTTTGGTCAGGTAAGGGAGCATGCGGCAGCAGTCTTGGCTGGCCTAATGAAGGGCGGAGATGAAGATTTAGCTCAGGATTTCCGTCATAGAGCTTATACAGAAGCAAGTATCATTCAGAAGAAGAGGAAACAAAGGTTCTTTTATTGTTTTAGTTTTACTCAATTTTGGCTAGTTATTATTACTATGCTTATATAATTTGTTGGGTTATTACTGATGATCATCCTAGAGAGGTCACATCTATCTGTATATTCTAACTCCATTTGCCTGGGATGGGCTTGTAACATTAATGATGATAACCTTAGAGAGATGAAGCCTGTCTTTATTATGTGAGATATGACATAAGGGGCTAACTCATCCCCAAAAACTAGCTCATGAGTGGAGGATTTTTCAAGTCCATATAAGCAAATCATTGTTTCCCTTCTCCAACCAATGTGGGACTTTAACACACTAAGTGCACCCTTCCACACCTAGGCCCAATTGGAGCATGGATCGGGAGCCCAAAGGGACCAGAGCGTAACTTAGTCCCAAAAGCTAACTCATGAGGGGAGGACTGCCAAGTCTAGACCACCGGTCCATTCCCCAACCGATGTGGGACTTTAACCCACTCTCACCATGCACCTGGCATGTTTTTGTTAAGTCCTTCCTGATGATCATTCTAGAGAGATCAAGCCTTTGTGCATATGAATTAACACCATGGTTTTGTTGCTCAAGATGTGTATATATATAATAATCATTTGCAATTCTACTAAAAGAATTCCTGTGAATTGTTTTGGTTTTGTAGTAGCTAATATTACGAAGATATTACACAAACATCAATTAAGCGACTAATTTGATTTGGATACCTAGGGCACCTAGAAAAGTGTGTTTCTATGTGTGGTTGGCAGCTAGGGGAGCGATACTGACAACCAAGAATCGTAGGAAGAGAAGGATCATACACATCACCGGATGTTGTATGTGTAGATTTTCTTGCAAACACAGTAGTGTTAGGATCCTTGTAAGATGAACAAGGATGATATAACTATCATTTTGTATTCCAAAACAAATGTTGTACTGATGGTTATATATTTACATATAATCAATGTGTTACCATTCTCAAAAATGAAATTGCTATTGCAGAAGCATGCGTTCTGGATTCTCTGTAGCATCCCTACATGGAAAGATACTTGCTTTGGCTGCTTGCGTGCTATCAGTTCCTTATGATATTCCCAGGTACGTCCATTGTCTGATATAGTTTCATATATTCAAGATATATTTCACTATCAGTTTCTTATAATATTCCCAGGCACACCGCCCATTATATAACATAAATTCATATGTTCAAAGATATATATGACCAAGTGTTATCCTAGGAAGTTCCTGGAAGTAGCAATCCACTGCAGGAATGATAAACAGCATTTTAACTTGTCACAAAAGATGAAGTAAAATAAAACGAAATGTAACTTAAACTGCGTTTGAGATGACCCTGATGATTAGGGCCAGCAATCTGATAAAATATTAAATTGATCAACTTATGCTGGTCCAAATTAATTGAGTGTGTGGAGATCGTGCTTAATGTTTTGAAGTATTCTAGCAGACAGTTTCTTTCAAGCAGTCTTTACAAAAGTGTAGGATAATCATGTTTATGGATTTCACATCCTAAGTATGGGGTCATAATTGTCGCTAACACGACGTCAACTTTTTTTCCACATGGTATATTGCTTTTAATTTCCATTGTATATTACCTATTCAATTTTATTTTGTTATATCTACTTGAATGTAGCTTGACATTCTAAACTTTCAAATTAGGAGTTAGTAATTTTGTTAATACAAAAGAGTCAAGTTACTTTCCATGCATTACATTTTATTAGTCAAGTTTCATATGCCATTCAGTGTATTGAATAGTAGCTGCTAGCTAGTGTCTTTCTTTTTCGAATTTTTTGGTTTTGTATAACTAAGATTTGTTAAAAGAAATAAATATATAAGCAAATTTTTTCTTTAATTTAGAGACTTATAAGTTTTAATACTTGATGGAAATACTGTATTTGTCTCCTGTCTTGTTTTACGTGATGTTGTTTGATTATGCATGAAGTTTAAGAAAGAAATGAAGGAAGACTTTTGAAACTTGTTGTCTAAAACAAGCCAAAAATGTTTGTGAGGCTATAAAACGTCTCATCAGAAAACAAACAAATCAGTCTATTAGTTAAAGAGTGTATTGTGTTATTTCACTTTTGCTGTTAAAAGAAATATGTAAGTGACGCAGAAGCATCGCTAGAACTCATAGAGTTTCTTAAGGATTAGAAGAGGGCAATGTGCTTGCTTACTGTATAGAAATTCCAGCACTAACTTTGTGCTGTTTACAAATAAAATTATTACCTTTTCAAAATATAATTCTTTTAAAGTTATAACTTATTTCTACATGTACAAAGATATCATTATTCTTTTTGAGATGGTCCAAAGTAGTGTACTACTATTAATCTTTAGATATTTTCAGTAATATGGATTACTCTAGAGAAATGTTTCTCATTAGTGACAAATTGCCAAATTTTATCGCAGTTGGTTACCAGAACAGGTTACACTATTGGCTCAATTTGTTTCTGAATCATCACCTGTAAAATCTACCGTGACAAAAGCTGTGGCAGAGTTTCGACGCACTCATGCGGACACATGGAATGTTCAGAAAGATTCCTTCACTGAAGAACAACTTGAGGTATGGTTCGCACGTACATTTATTGTTATTTTGTACATTTCGCTGATGTAGGTTCCTCTCCAAACTAAATTCTTTAACCAAATATTGACATACAAGCAAGGGTAATGTCAAAATTTAGATCCATGGGTACGACCTTGTTGAGATCTTTTGGCCAAGAGGGCTCTGTATTAAATTCCATCCAAAACTGGTTACTTGTTTAATGTGAAAAAGAAGTTTTTTTCTGAAGCTCTATAGAAGACTTGAACTTTTTTTTTACATCAAATCCTAGTTCCATATGGGATTTGAGATTTTGGCAAGAGAATTAGAAGAATTGAGTTGTTCAGCAAGCCACCTCTTATAATTGATGATTGGTGTTTTCTTAGCTAACAAGATCATTTGTGACATCTTTGCAGGTCCTGGCTGATACATCATCATCCTCATCATACTTTGCTTGACATTCATGGTGTGCCTTACATGAGAGATAGAATTATACCATATCATATATCTCATATATTGTAAGTGGGAAGTCTCCAAGTCTAAAGTTGAACTACAAAAATGCTCATACAATTTTTTATTAAAAATTTTGTTCTACACTAAAAATTAAAAGAAAAAACTTTTAGACAGAAAATCATTCATTTTCTACATTGAATTTGAACGTAGAAAATTGTGTTGTCATCTTCCCACAATTGTT</genome_strand>
        <mrna_strand>GATAAATCCAAGTCTTCTCTCGAAGAAGCTTTAAGTAATATATTCCAGGAAGAGGGGTTTTTCAATGAAACCCTGAATAGTCTTTCTCATGTTCATATAATTGACACTGATGGTGCTTCTTCTAAAGGAAATCATGGCACCTCCTCATTTCAGAGTGTGGCTGACAAATCCATTACTCGATTTTATTTTGAATTTTCTTCATCATGGCCCCGTACTCCCAATTGGATATCTTTGTTTGGAAATGACACATTCTACTCAAGCTTTGCCCGAATTTTTAAACGTCTAGTACAGGAATGTGGTGCTCCTGTTATACTGGCACTAAAAGATGCATTAGCAGACTACATAAATGCAAAGGAGAGGACAAAGCAGTGTGTTGCTGCTGAGGCAATGGCAGGTGTGCTACATTCTGATGTTTCCGGTGTTTCAGAAGCATGGGATAGCTGGTTGATGACCCATTTTCAGAGTATTATTCAAGCACCAACAGTTGAGTCCATACCTGAGTGGGCAGCTTGTATTCGTTATGCAGTTACTGGAAAAGGAAAACATGGAACAAAAATTCCACTCTTGAGACAAAAGGTCATGGACTGTTTAATGAACCCCTTGCCTGAAACAGTTAGTACTACTGTAGTTGCCAAGCGATACATGTTTCTTTCAGCTGCACTAATAGAAGTTTCCCCACCAAAAATGCCAGTTACTGAACTAGCGCTTCACTATAAGCTTCTTGAAGAATTGCTTGGCAGTATGAGCCATTCATCTCCACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGAATCCATTGGTGTCACCCTCTCTGTTTTATGCTCAAACATTCGGCTCCAGGTGTCCTGCAATCAAGCTCATCCACATGAAGTAGGAACAAGTAATGTGAACAGGAAAGTTGAAGCAGGGAATTGGGATCATTATCTAGTAGAACGTGCATCTGAGCTTGTGGTGAAGATCCAAAGTTTTAGCCAGTCAGACACTCTGGATGTGCAAACGGACATGATTTCTGACAATGGAGTATTAACCGAACAGTCTCATGATGATGTTAAATGGATGGAGACG.............................................................................CTATTTCATTTCATTATCTCATCTCTAAAGTCAGGAAGATCCTCGGTTCTGCTGGATGTTGTTGTTGGTCTTTTGTATCCTGTAATATCTCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACGTCAAATAAGGATTTGTCGACACTGGCCAAAATAGCTTTTGAATTGCTAAAGTGGAGAGTTTATTCAGAGTCCCATTTAAGGAAAGTTGTGCTCACCATTCTTTCTATAGCCAATGATACCAATTGGCGTACAAGATCTACGACTCTGACCTATTTACGGAGTTTCATGTATAG............................................................................................................................................................................................................................................................GCACACTTTCGTCCTCTCTAAGGTGGACAAACAACAAATTTGGCAAACTGTCGAGAAGCTACTCGCAGATAATCAAGTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGGGAGCATGCGGCAGCAGTCTTGGCTGGCCTAATGAAGGGCGGAGATGAAGATTTAGCTCAGGATTTCCGTCATAGAGCTTATACAGAAGCAAGTATCATTCAGAAGAAGAGGAAACAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCATGCGTTCTGGATTCTCTGTAGCATCCCTACATGGAAAGATACTTGCTTTGGCTGCTTGCGTGCTATCAGTTCCTTATGATATTCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTACCAGAACAGGTTACACTATTGGCTCAATTTGTTTCTGAATCATCACCTGTAAAATCTACCGTGACAAAAGCTGTGGCAGAGTTTCGACGCACTCATGCGGACACATGGAATGTTCAGAAAGATTCCTTCACTGAAGAACAACTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGGCTGATACATCATCATCCTCATCATACTTTGCTTGACATTCATGGTGTGCCTTACATGAGAGATAGAATTATACCATATCATATATCTCATATATTGTAAGTGGGAAGCTTCCAAGTCT-AAGTTGAACTACAAAAATGCTCATACAATTTTTTATTAAAAATTTTGTTCTACACCAAAAATTAAAAGAAAAAACTTTTAGACAGAAAATCATTCATTTTCTACATTGAATTTGAACGTAGAAAATTGTGTTG-CATCTTCCCACAATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318426" ref_strand="+" ref_description="SGN-U318426        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:4319654-4330068 REVERSE | Aliases: MDC11.16(evalue: 1e-28, score=123) genbank/nr: gi|30682618|ref|NP_187941.2| expressed protein [Arabidopsis thaliana](evalue: 1e-26, score=123)">
      <seq>ctccacaagtgagggaatccattggtgtcaccctctctgttttatgctcaaacattcggctccaggtgtcctgcaatcaagctcatccacatgaagtaggaacaagtaatgtgaacaggaaagttgaagcagggaattgggatcattatctagtagaacgtgcatctgagcttgtggtgaagatccaaagttttagccagtcagacactctggatgtgcaaacggacatgatttctgacaatggagtattaaccgaacagtctcatgatgatgttaaatggatggagacgctatttcatttcattatctcatctctaaagtcaggaagatcctcggttctgctggatgttgttgttggtcttttgtatcctgtaatatctctacaggttagttgcaacatcacatcattcccgttgcttgtcttttcagttgttttgacattttgaagggatgaaattactgtctgaagaacttggcatatacacactttccctccatttacggatgaaaatggagacgtcaaataaggatttgtcgacactggccaaaatagcttttgaattgctaaagtggagagtttattcagagtcccatttaaaggaaagttgtgctcaccattctttctatagccaatgataccaattggcgtacaagatctacgactctgacctatttacggagtttcatgtataggcacactttcgtcctctctaaagtgacaaacacaaatttggcaaactgtcgagaagctactcgcagataatcaagttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="-" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="16242" stop="13219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15938" g_stop="15657" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="290" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15656" i_stop="15580" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15579" g_stop="15357" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="513" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15356" i_stop="14032" i_length="1325">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14031" g_stop="13853" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="693" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13852" i_stop="13601" i_length="252">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13600" g_stop="13519" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="773" r_length="80" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="-" ref_id="SGN-U318426" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15938" e_stop="15657"/>
          <exon e_start="15579" e_stop="15357"/>
          <exon e_start="14031" e_stop="13853"/>
          <exon e_start="13600" e_stop="13519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGGAATCCATTGGTGTCACCCTCTCTGTTTTATGCTCAAACATTCGGCTCCAGGTGTCCTGCAATCAAGCTCATCCACATGAAGTAGGAACAAGTAATGTGAACAGGAAAGTTGAAGCAGGGAATTGGGATCATTATCTAGTAGAACGTGCATCTGAGCTTGTGGTGAAGATCCAAAGTTTTAGCCAGTCAGACACTCTGGATGTGCAAACGGACATGATTTCTGACAATGGAGTATTAACCGAACAGTCTCATGATGATGTTAAATGGATGGAGACGGTACAGTCAGCCAACTCATCTATTGGGCTTTTTGCACCTAAGACCTTTTATTGATTACTTGTTTTGGTGATATGCAGCTATTTCATTTCATTATCTCATCTCTAAAGTCAGGAAGATCCTCGGTTCTGCTGGATGTTGTTGTTGGTCTTTTGTATCCTGTAATATCTCTACAGGTTAGTTGCAACATCACATCATTCCCGTTGCTTGTCTTTTCAGTTGTTTTGACATTTTGAAGGGATGAAATTACTGTCTGAAGAACTTGGCATATACACACTTTCCCTCCATTTACGGATGAAAATGGTAAATCTTGTAACTGAGGTCTCTTGGAGTTGGAGAAAAGAAACTTTGATTTTTGTTTTTTGTCAATTTCTGTGATTGAGATCTCTTAGAAGAACAAACTTTGACTTATGATTTTTGACAAATTGATAAGAAGCATCTTGTTTATCTCATGGTGATAAGGCTATACTTTTAAGTTTTCTGTAATTTTTCTTGTCTTCAACAGCTATTTCTTGCAGTTCCTCACATTTGGCTGGTTGTTCTTTTTTTACCAACTACATATTTGTACCATTGGAACTAGAGGTCTGCCTTTCTTAGGTAATGAGGATGGAGAAATCTATGAAGGCAGGATATTATTGGAAATAGATGATTGGATTTAGTTGTTTCCATAGTTGAAATATAAGAGGAACTTCTGTGAGCCAAGTTAATAGGCTGATAATGCTGAAATTACATGTTTTTCTTCTTCTTCATCTCATCATTTGGCGTCTAAGATAGTTTTTTGAGTTACTGCTTTTTAGCTTGTTCAAATTTTACAAATGAGTGTGTACGAAATGTTGTGACCTAAGAAAATAACTAATTATCTCCTCTCTTTAAGGACTTAAGATTTTAGATGAGGTGACACCAATCAGGTTTGATTTTCGTTCCAATTAGTCAACCTTACTTGCCTATAAGAGTTAAGCCTGCATATCGTGGTATTGATGAAATCTTTAAAGAAATAAATCTCTCAACTTTAACAACATAGCTTTTAGGGAAGGTATAGCCACATCGTAAGAACTATTGCATTAAACTGTTGTCACATAAACTTCTCCTTGCCGAATTTTGATTCTTATCTCTCTCCGAGTCTTTAACTAAACTGACCTTTTCCCTTAACTGACGGGAGCTACTGTATATCAACAAGAAAGGATTAAATCGAAAAGACTCCTGTTGAAGAGTTCCATTTTTGGATTAAATTCTGACTGCAAGGCATCTCCATTGTTAATTTCCTATGGTTTTATGCTTGGTACACGAGCCATAGCCATTGAACTTGTATCCTGTACAAAGAAGGAGAATTGTGAGTCTGTGCTCCCTTCATGTTTTGGTGATATTTCGGGTGTATATATTATCCCAGACCATATTAGATCTGCATGTTTCTAATTCTTTCGTTCAGTTTTTGTCTTGATTTATATCTACATATGAAGTAAGTCCTAGTTAATTTTGTTCAAACGAATGATACTGAAAATTTGAATTATTGACATTTTTTCAGCTGTTGCACACGTGAAGAAATTGATACACTATAAATTAATATATTCTCATTGGAGGTGTTTATAATAGAAGTGCATTTCTCTTTTGATACTGTTGATTTTTTGTAGGAGACGTCAAATAAGGATTTGTCGACACTGGCCAAAATAGCTTTTGAATTGCTAAAGTGGAGAGTTTATTCAGAGTCCCATTT-AAGGAAAGTTGTGCTCACCATTCTTTCTATAGCCAATGATACCAATTGGCGTACAAGATCTACGACTCTGACCTATTTACGGAGTTTCATGTATAGGTATGATCTTTCCGTTTTGATCTTCCCTCCTCTCTCCTCCTTCGGTGAAAAAAAGTCATTTTGGTTCTTGAAGAGAAAATGAGGTACTTTGAAAGAAACAAGTATTGTTATCATCACTCTACACTGAATCATTGTTATTTTTATTTCAAACTCAGTCTTCAGGTGTTGCGGTGGTCTAGAATAGCTAAGTGATGCAAAAATAAACTTGTAATATCCTGAATAAATGAGTTGCTATCTTGTTGCACCATACAGGCACACTTTCGTCCTCTCTAAGGTGGACAAACAACAAATTTGGCAAACTGTCGAGAAGCTACTCGCAGATAATCAAGTTGAG</genome_strand>
        <mrna_strand>GTGAGGGAATCCATTGGTGTCACCCTCTCTGTTTTATGCTCAAACATTCGGCTCCAGGTGTCCTGCAATCAAGCTCATCCACATGAAGTAGGAACAAGTAATGTGAACAGGAAAGTTGAAGCAGGGAATTGGGATCATTATCTAGTAGAACGTGCATCTGAGCTTGTGGTGAAGATCCAAAGTTTTAGCCAGTCAGACACTCTGGATGTGCAAACGGACATGATTTCTGACAATGGAGTATTAACCGAACAGTCTCATGATGATGTTAAATGGATGGAGACG.............................................................................CTATTTCATTTCATTATCTCATCTCTAAAGTCAGGAAGATCCTCGGTTCTGCTGGATGTTGTTGTTGGTCTTTTGTATCCTGTAATATCTCTACAGGTTAGTTGCAACATCACATCATTCCCGTTGCTTGTCTTTTCAGTTGTTTTGACATTTTGAAGGGATGAAATTACTGTCTGAAGAACTTGGCATATACACACTTTCCCTCCATTTACGGATGAAAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACGTCAAATAAGGATTTGTCGACACTGGCCAAAATAGCTTTTGAATTGCTAAAGTGGAGAGTTTATTCAGAGTCCCATTTAAAGGAAAGTTGTGCTCACCATTCTTTCTATAGCCAATGATACCAATTGGCGTACAAGATCTACGACTCTGACCTATTTACGGAGTTTCATGTATAG............................................................................................................................................................................................................................................................GCACACTTTCGTCCTCTCTAAAGT-GACAAAC-ACAAATTTGGCAAACTGTCGAGAAGCTACTCGCAGATAATCAAGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346261" ref_strand="+" ref_description="SGN-U346261        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:4319654-4330068 REVERSE | Aliases: MDC11.16(evalue: 3e-35, score=145) genbank/nr: gi|53792862|dbj|BAD53980.1| proteasome activator subunit 4-like [Oryza sativa (japonica cultivar-group)] (evalue: 8e-44, score=179)">
      <seq>agggaaaaaaaggcctagttgggcacttattgacaaagcatgcatgcagggtacttggagagcctcacaatcatcatatcatatcttccggctgagtgcaaatgtatctccttcagatcatatcattcatttgacggatgatcttcttaatctctccttgcatagttatgaaacagtccgtggacttgctggaaaatctctcttgaagatgatgaagagatggccctctacaatctcaaaatgtgtgctcagtctgagtcagaacttgaaaaattctagctcaccagaatgcgcagtcttaagttcctgtgcagtccttgcaacgcaaactgttcttaaatgtttaacaacggatttgaaggcactttcttccttcctgcttggaattctgtcaagctctcatcatgaaacactaaaagctcagaaagccatcaatgagcttttcattaagtacaacattcatttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="-" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="20741" stop="18950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20538" g_stop="20527" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20526" i_stop="20440" i_length="87">
            <donor d_prob="0.921" d_score="0.00"/>
            <acceptor a_prob="0.703" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20439" g_stop="20269" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="183" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20268" i_stop="19794" i_length="475">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19793" g_stop="19625" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="352" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19624" i_stop="19548" i_length="77">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19547" g_stop="19504" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="396" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19503" i_stop="19411" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19410" g_stop="19368" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="439" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19367" i_stop="19280" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.583" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19279" g_stop="19250" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="469" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="-" ref_id="SGN-U346261" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20538" e_stop="20527"/>
          <exon e_start="20439" e_stop="20269"/>
          <exon e_start="19793" e_stop="19625"/>
          <exon e_start="19547" e_stop="19504"/>
          <exon e_start="19410" e_stop="19368"/>
          <exon e_start="19279" e_stop="19250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAAAAAAAGGTAAATTTAGCTATGTTTTTGTATGTAAGACTCACGGCCATATTGAATATGGTGTTTCCGTCTTTGAAGATAACACCAATTTTGCAGGCCTAGTTGGGCACTTATTGACAAAGCATGCATGCATAGTACTTGGAGAGCCTCACAATCATCATATCATATCTTCCGGCTGAGTGCAAATGTATCTCCTTCAGATCATATCATTCATTTGACGGATGATCTTCTTAATCTCTCCTTGCATAGTTATGAAACAGTCCGTGGGTGAGTTCTAATCTTTCAATCATATTGTCTGAACATGTGTCCTCTTTGCCTTAAATGAGGTCAAAGTTTATAAATTCTTTGAATTTGAAATATTTCTACATCAACGAATAGAATAGCTGCAACAGGAGCTTCACAGTCGCTCTATATTGGACATACGGAAGCCTTTAAACCTTTTACTCATTCACTTAGTACTCATATATTAAATAGGTGCTTAAGCTAATATAATTACATGCTATTTTATCCTGTTGTAGGGAAGTCATGGAAGTAGAATAATGATATAATCTTTTGAGTGATTTAAGCAATACAATGAGGAGTACTAACTGTGTGCATATCTCTCATGGTCATTGTCCTGTCATTCTTAATTTCCATTGGGAAGACCATTTTTATGTTGATTGCTAATGATTAGGTCCCATAACCAAGTTGCATCTTCTGGAAGATTTTTTGTATCTCATCTATCTACTCCTCATTTCCTCAGACTTGCTGGAAAATCTCTCTTGAAGATGATGAAGAGATGGCCCTCTACAATCTCAAAATGTGTGCTCAGTCTGAGTCAGAACTTGAAAAATTCTAGCTCACCAGAATGCGCAGTCTTAGGTTCCTGTGCAGTCCTTGCAACGCAAACTGTTCTTAAATGTTTAACAACGGTACTGATCTTCATACTACATGCATTATTCTTTAGGAAGTGAGTACCTGACTTTGTTTTTGCTCTTCATGACACAAGGATTTGAAGGCACTTTCTTCCTTCCTGCTTGGAATTCTGTCAAGGTAAATTTTTTTGCTTGCATCTTGTTTAGCTTGTGATTCCTTATAGCCCAATGTTGGTGTTGACTCTTTGTTACCGAATCTTTATTGCTCAAGCTCTCATCATGAAACACTAAAAGCTCAGAAAGCCATCAATGAGGTGAGATATACATTCAAAGTCGAGTCTTTTCATTTCTCTTTTCTATGTTGACAAAAGAAAGTTTATTTTTTTATTGGATATCTTACAGCTTTTCATTAAGTACAACATTCATTTTTCT</genome_strand>
        <mrna_strand>AGGGAAAAAAAG.......................................................................................GCCTAGTTGGGCACTTATTGACAAAGCATGCATGCAGGGTACTTGGAGAGCCTCACAATCATCATATCATATCTTCCGGCTGAGTGCAAATGTATCTCCTTCAGATCATATCATTCATTTGACGGATGATCTTCTTAATCTCTCCTTGCATAGTTATGAAACAGTCCGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGCTGGAAAATCTCTCTTGAAGATGATGAAGAGATGGCCCTCTACAATCTCAAAATGTGTGCTCAGTCTGAGTCAGAACTTGAAAAATTCTAGCTCACCAGAATGCGCAGTCTTAAGTTCCTGTGCAGTCCTTGCAACGCAAACTGTTCTTAAATGTTTAACAACG.............................................................................GATTTGAAGGCACTTTCTTCCTTCCTGCTTGGAATTCTGTCAAG.............................................................................................CTCTCATCATGAAACACTAAAAGCTCAGAAAGCCATCAATGAG........................................................................................CTTTTCATTAAGTACAACATTCATTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344697" ref_strand="+" ref_description="SGN-U344697        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:4319654-4330068 REVERSE | Aliases: MDC11.16(evalue: 9e-96, score=346) genbank/nr: gi|9294539|dbj|BAB02802.1| contains similarity to unknown protein~gb|AAF50915.1~gene_id:MDC11.16 [Arabidopsis thaliana](evalue: 8e-95, score=349)">
      <seq>cgagttcagatctttgcttgaaaatccatggcacaattcattctttgagggtgctggttttgtaagactgttccttcctaccaatagagacaaccaggatttcttttctcacacttggattgttacgtgtttagtccactgggattccgtaccaaattcccagttttggaacagccagtgggcctccgttacagctcgtgttttaaagaactatagcttcattgactgggaacatttcttaccagatattttcaataaatatttgaatatgttcgaggttccagtagcaaatggcagtgggtcaaacccattctctgtggatgttcccagaaacacaagattcttgttctcaaatagaacaatcactccatcaaaagccattgctaaatctatagtttatctactaaaacctggtggttctgcacaagaacatttggagaaattggtcaacctcttggaacagtattaccatccttctaatggtggtcgctggacttattccttggagcgattcttgttccacttggtaaatatatttcagaaacgcttgcaaaatgagcaacagagaaaagatgacggcgagcagtctgaaatcttcctagggcagtcagagagggtttcttttgtgcattctattctncagctaattgatcgtggacagtatagcaaaaatgaacatctttctgaaaccgttgcagctgccacttctatccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="-" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="25863" stop="23989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25756" g_stop="25748" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25747" i_stop="25558" i_length="190">
            <donor d_prob="0.758" d_score="0.00"/>
            <acceptor a_prob="0.647" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25557" g_stop="25456" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="111" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25455" i_stop="25370" i_length="86">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25369" g_stop="25204" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="277" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25203" i_stop="24984" i_length="220">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24983" g_stop="24867" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="394" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24866" i_stop="24785" i_length="82">
            <donor d_prob="0.168" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24784" g_stop="24717" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="462" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24716" i_stop="24628" i_length="89">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24627" g_stop="24526" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="564" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24525" i_stop="24441" i_length="85">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24440" g_stop="24289" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="716" r_length="152" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="-" ref_id="SGN-U344697" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25756" e_stop="25748"/>
          <exon e_start="25557" e_stop="25456"/>
          <exon e_start="25369" e_stop="25204"/>
          <exon e_start="24983" e_stop="24867"/>
          <exon e_start="24784" e_stop="24717"/>
          <exon e_start="24627" e_stop="24526"/>
          <exon e_start="24440" e_stop="24289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTTCAGGTAGGATTTACTTCCTGGGTTAGGCTCTGTAAGTGCAAAAAGTGACAGTAACTTGGGGTGTTTGCTGAACTTCTTTCCTAGGCCAAGATCCATCAACCACTATTGATGTGTTTCTCCTCTCATGAACTAATTTTTTAGGGTTGAATTTGGCTTGTTAGGTCCTCATTCATTAATGGAGTGCATTTTGCAGATCTTTGCTTGAAAATCCATGGCACAATTCATCCTTTGAGGGTGCTGGTTTTGTAAGACTGTTCCTTCCTACCAATAGAGACAACCAGGATTTCTTTTCTCAGTAAGGACAATCTACTTCTTCTGAAGATATTTTCACTTTCATCTCACTACATAAGTAAACTAATCCTCTTTTTGGTGTTATGGCAGCACTTGGATTGTTACGTGTTTAGTCCACTGGGATTCCGTACCAAATTCCCAGTTTTGGAACAGCCAGTGGGCCTCCGTTACAGCTCGTGTTTTAAAGAACTATAGCTTCATTGACTGGGAACATTTCTTACCAGATATTTTCAATAAATATTTGAATATGTTCGAGGTAGGTTATGTACTTATGTTGCATAGACTTTATCTTTGTTGCTTGAAGAAATTTTCTTAGCAAATGAGCATGTGCAAACAAGTTTGTCTTATTACTATGCCTTGTATGGAAGATCATATTCCATCATAATTGTATATTGGAAGGTTCCTTATTTTAGAGAGAAATGGAACTTGTTGCCCTGGTGTTTCTCATGTAATATTTCATTCATCTTTGTTCACAGGTTCCAGTAGCAAATGGCAGTGGGTCAAACCCATTCTCTGTGGATGTTCCCAGAAACACAAGATTCTTGTTCTCAAATAGAACAATCACTCCATCAAAAGCCATTGCTAAATCTATAGTAAGCGCACTTGTATAAGTGATCATAAGAATACATCTGCATGTGGCAAAAATGACCTCTGTTTTTGTCAATGTAAATGCAGGTTTATCTACTAAAACCTGGTGGTTCTGCACAAGAACATTTGGAGAAATTGGTCAACCTCTTGGAACAGTTCGTTTTCTACACAGATTTTATATCACCTTACTTTAAAAAATTTTGCCTTATAAAATTTTGTAAATCATCTCATTTTGTTGTTTTAGGTATTACCATCCTTCTAATGGTGGTCGCTGGACTTATTCCTTGGAGCGATTCTTGTTCCACTTGGTAAATATATTTCAGAAACGCTTGCAAAATGAGCAACAGTAAGAATTTTTAATCTATCATAGTAATTCTAGATTCTATATGAGAGTATGTAGCCTTTGTCTGACTGTGAGATGGTGGGCTCAGGAGAAAAGATGACGGCGAGCAGTCTGAAATCTTCCTAGGGCAGTCAGAGAGGGTTTCTTTTGTGCATTCTATTCTCAAGCTAATTGATCGTGGACAGTATAGCAAAAATGAACATCTTTCTGAAACCGTTGCAGCTGCCACTTCTATCCTTT</genome_strand>
        <mrna_strand>CGAGTTCAG..............................................................................................................................................................................................ATCTTTGCTTGAAAATCCATGGCACAATTCATTCTTTGAGGGTGCTGGTTTTGTAAGACTGTTCCTTCCTACCAATAGAGACAACCAGGATTTCTTTTCTCA......................................................................................CACTTGGATTGTTACGTGTTTAGTCCACTGGGATTCCGTACCAAATTCCCAGTTTTGGAACAGCCAGTGGGCCTCCGTTACAGCTCGTGTTTTAAAGAACTATAGCTTCATTGACTGGGAACATTTCTTACCAGATATTTTCAATAAATATTTGAATATGTTCGAG............................................................................................................................................................................................................................GTTCCAGTAGCAAATGGCAGTGGGTCAAACCCATTCTCTGTGGATGTTCCCAGAAACACAAGATTCTTGTTCTCAAATAGAACAATCACTCCATCAAAAGCCATTGCTAAATCTATA..................................................................................GTTTATCTACTAAAACCTGGTGGTTCTGCACAAGAACATTTGGAGAAATTGGTCAACCTCTTGGAACA.........................................................................................GTATTACCATCCTTCTAATGGTGGTCGCTGGACTTATTCCTTGGAGCGATTCTTGTTCCACTTGGTAAATATATTTCAGAAACGCTTGCAAAATGAGCAACA.....................................................................................GAGAAAAGATGACGGCGAGCAGTCTGAAATCTTCCTAGGGCAGTCAGAGAGGGTTTCTTTTGTGCATTCTATTCTNCAGCTAATTGATCGTGGACAGTATAGCAAAAATGAACATCTTTCTGAAACCGTTGCAGCTGCCACTTCTATCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316647" ref_strand="+" ref_description="SGN-U316647        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 5 WD-40 repeats (PF00400); similar to beta transducin-like protein HET-E2C*4 (GI:17225206) (Podospora anserina) | chr5:22739778-22742311 REVERSE | Aliases: MDA7.19, MDA7_19(evalue: 1e-164, score=576) genbank/nr: gi|15241134|ref|NP_200424.1| transducin / WD-40 repeat protein family [Arabidopsis thaliana] gi|9758633|dbj|BAB09295.1| gb|AAF54217.1~gene_id:MDA7.19~similar to unknown protein [Arabidopsis thaliana] gi|20260442|gb|AAM13119.1| unknown protein [Arabidopsis thaliana] gi|23197932|gb|AAN15493.1| unknown protein [Arabidopsis thaliana](evalue: 8e-163, score=576)">
      <seq>aagcagagagtaatggcggaaacaatacccttcaaaaatcttcatagcagagagtaccagggacacaagaagaaggtgcattcggtggcatggaactgcagtggcacgaaattagcttcaggttctgtggatcaaacagctcgtatttggcaaattgagcctcatggtcatggaaaggtaaaagatgttgaattaaagggtcacaccgacagtgtggaccagttatgttgggatccaaaacatgcagaattgatagctacagcatctggtgacaagacagttcgattatgggatgcccgtagtgggaaatgctcacagcaagttgaactcagtggggaaaatatcaatatcacttacaagcctgatgggacacatatagctgttgggaacagggatgatgagctaacaatcttggatgttcgcaagtttaagcctattcataagcgcaagtttaattatgaggtaaatgagattgcatggaacacgggtggcgatatgttctttcttacaactggaaatggaactgtggaagtcttagcttatccgtctctacaagctgttaacacgcttaatgctcacactgctggttgttactgcattgcaattgatccactaggaagatattttgctgttggaagtgctgattcattggtcagcctttggagcatcaaggagatgctatgtcttcgaacatttacaaaacttgagtggccagttcggacaataagtttcaatcacacaggagactacattgcctctgctagtgaagatttgtttattgatattgctaatgtccaatctggacggtcagttcaccaaattccatgtcgtgctgccatgaacagtgttgaatggaatccaaaacacaacttgcttgcctttgccggggatgataagaacaaataccaggctgatgaaggtgtgtttcgcatatttggctttgagagcgcagcataaaaagccctgatgaaaggttattttattaaaagagaggcctgaaagaaatcttgtataatttatgatgaagaaagcaaaattttcagatgaacaacttgtttacattgcttttgtaacatttattacatgtcaggtttgaaaaatgctgaaagagacgttgaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="-" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="38852" stop="32596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38552" g_stop="38477" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38476" i_stop="38336" i_length="141">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38335" g_stop="38240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="171" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38239" i_stop="36086" i_length="2154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36085" g_stop="35956" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="301" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35955" i_stop="35382" i_length="574">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35381" g_stop="35290" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="393" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35289" i_stop="35019" i_length="271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35018" g_stop="34950" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="462" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34949" i_stop="34260" i_length="690">
            <donor d_prob="0.137" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34259" g_stop="34202" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="520" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34201" i_stop="34096" i_length="106">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34095" g_stop="33996" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="620" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33995" i_stop="33681" i_length="315">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33680" g_stop="33594" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="707" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="33593" i_stop="33500" i_length="94">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="33499" g_stop="33421" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="786" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="33420" i_stop="33287" i_length="134">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="33286" g_stop="33154" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="919" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="33153" i_stop="33086" i_length="68">
            <donor d_prob="0.503" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="33085" g_stop="32902" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="920" r_stop="1116" r_length="197" r_score="0.826"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1118" polyA_stop="1136"/>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="-" ref_id="SGN-U316647" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>1104</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38552" e_stop="38477"/>
          <exon e_start="38335" e_stop="38240"/>
          <exon e_start="36085" e_stop="35956"/>
          <exon e_start="35381" e_stop="35290"/>
          <exon e_start="35018" e_stop="34950"/>
          <exon e_start="34259" e_stop="34202"/>
          <exon e_start="34095" e_stop="33996"/>
          <exon e_start="33680" e_stop="33594"/>
          <exon e_start="33499" e_stop="33421"/>
          <exon e_start="33286" e_stop="33154"/>
          <exon e_start="33085" e_stop="32902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGAAGAGTAATGGCGGAAACAATACCCTTCAAAAATCTTCATAGCAGAGAGTACCAGGGACACAAGAAGAAGGTTTCTCTCTCTAAAACTATTCCTTCACTTCATTGTTAACAATACAACCCTAATTTTGCTTTTCCTTTTTATGAACTCTCTGATTAGATGAATTGACTATGTGATACTTTATCTTCTCTGTTTTTTTAAAAAAAATTAAAGGTGCATTCGGTGGCATGGAACTGCAGTGGCACGAAATTAGCTTCAGGTTCTGTGGATCAAACAGCTCGTATTTGGCAAATTGAGCCTCATGGTCATGTAAGCTTCATGAGCTCATCTTTTTTGTTTTCAGTTAAGTTTTAATGCTGAAAAAAGGATAGCTTTTTGTTATTGCTCTGATTTTTAAATGTTCTACTGAAGTGGTGGGAAACTGGGTGTTGTAAATAAACTGAAAAAAGGATAGCTTTTTATGATATATGCATGAACTTAGGCACCTGAGATTTTCTCTAGAGTTAAGAAGCTGGTCTCTCACTTTAGTTGTTTCTGCCAAAGTCTAGTTCTATGTGGTATGAGTTAAGGAACCTATGATAGTAATGCCTGTTGCAGTTAGGTTTAAATTTTGTTGTTACTTATCAAAGGTGGGGTAAAGTAAGCGTAACCTCACTTGTGGGAGGTCATACGAATTCGATGTTATAGATACACAGAGAGGTTTGAATTGGGAGAATGGGTAAAAAGATGCAGAAATGCTCCAGAGTTGTACAGGATGGTAAAATATCGCATGTCCCAGCTCAACGCACTTGGTGTGGAGTTATAGAAAAGCTGGAAAGGTAGCAAAGGAACATTTGGGATGCGGCGGATGGGACAAAGAAGTTTCACCTAGTGGGACGGGAGACCGTGACATCTCCTAAACAGTGGTGAGGACTTGGGGTTAAAGACTTGAAGGTTTTTAACAAAGTCCTCTTGGATAAATGGCTTTGGAGATTCGAGATGGAGGAAGAAGCTTTATGGGAGGGGTGATAGCGGACAAATATGGAGTTATGGAAGGAAGATGGAGAACAAATGTGGTTACCTTCCGAGTTTGGCATGTAGAAGAATATAATGAAGGGGTGGGAAGCCTTTAACAAAAACATTTTCTTTTAAGTTTGGGGTTGGGAGGAGACTAGTTTTTGGGGGTCAAAAGTGGTGCAGTGATTTGGTTAAAGAATGATTTCTTGGTGTTGTATAGCATTTCTGGGCAAAGGGAGCTGTCTGTTCAGCAAATTAGGGGGTGGGACCTTCTGGGATTTCCGAAATTGGGAGATGACCGATCTTCAAAGCTTTCTAGTTTTATACCATAAGCAATGCAAACCAGTAGATAGACCTGATGCTTTGAGTTGGGAGTTGGTGAATAAAAAAGTGTTCTCTATTAAGTCCTATAAAAGCTTCCTGTTAGGGTGGAAGTTAGTTTTCTGTATGACTCGGTATGGACACCTAAGGTGCTGAAGAAGGTGTATTTCTTCTTGTGGTTAGCTACTAAAGGGGTGATATTGACGGTGAAGAATCTTAGGGAATGAAAGGTGGTGGGCATAAGTTGTTGTTTCTTGTGTCAAGAGGCAGGAGAGGACATGATCAATATTTTGCTACATTGCAAAACATCTCGAGGTTATGGTAGGATATCTTTAGATGGTTTGATATTTCTTGGGCAATCCCAAATGTCTGTTGAAGTGTTGATGTTCAGTTGGAAGAGTGGAGTTAGGATAAGAAGACACAAGGTGTGAATGTTACTCCTCTTGCAGTAATGTGGGTCATTTGGAAAGAGAGAAATAGGAGAGCTATTGAAAGGGTGGAGAATTGGAGATTAGCTTTGCTCAATTGAGGAGTAGTCTCCGATCCCTTATTTTCTTTTGGTGTAATTTTTGTTTGTATAGAGGATTGAGGTGTCTTTTGGAGAACCATGTTTGGTAGGTTTCTCCTTTTGTGGTATACTCCTTTTATATGACCAAGATAGCCTTGTTATTATCAATTAAATCTTTTACTTGGTCATAGACCAGATAAATTTTTACTTTGTTAGTAGATCGAGTGCTCCATAACTCTATATCATTTGTCATTTCTCTTTATCAAGGCTATAAACATACTTTTATCTTGTTTCATAGTCGCAAAAATCCCAAGTTCCTCAACTTTGGAATTTGCATGAAGATTGAATGATATTTTGCTTCTGTTGCTCTGTATCAATACTATAAATGTACTTTTATCTTGTTTCATAGTCACAGATCCCAAGTTCCTCAACTTTGGAACTTGCATGAAGATTGTAGTATATTTTGCCTTTGCTTGCAAAAACCTGAACAATTAATAGCTTGCCACCATAAAACTACACTAAAATGATTGCGCCCTATCTATGTTTTCAATATTCTAGTCTTTTCTCATTCTTGAGAGGTGGAGTATAGAACCTCTTATGTCTGCATACACTCCAAGTCTCTGATAGCTCTTTTGCAGGGAAAGGTAAAAGATGTTGAATTAAAGGGTCACACCGACAGTGTGGACCAGTTATGTTGGGATCCAAAACATGCAGAATTGATAGCTACAGCATCTGGTGACAAGACAGTTCGATTATGGGATGCCCGTAGTAAGTTTATATTATTTTGCACCAGCAATAAGCTGCCAAAGTACTGTATGAAATAATGAGTTGGAATTTAAAGAATGTAATGCTATAAGAGCCTATGTCTATTGGTTACTTGAGGACTTGCACTATATTTATTCCCATAAAGTAATCATCCGAGAACAATATTACTCCTGTTTCAAAAATAATTGGAGGGGTCTAGCGTAAGTGGGTCAAACCTGTTAATTTCCGGTCTCAATTCATACATCAGTTTCTTATGTCTAGAACAATCTTATATAGTTAGAAACTGGAAAAAAGAAAACTATAAATTACACATTCTAATATGAAAATATTTTTGGTCAAAGAAAAGGTTATTTGACTGCTTAGAAGTATGTCATGTAAAGTGGAACCCAGGGGGGTTGGGTATGAGTTAGGTAACTCTACATGCACTTTCTTCTTTATAACTACTAATCAAAAACTCTACGTACACTTTCACAGCCTAGTTTCCCGTCAATTTCCAGGAAGTTGAAGATATTCATATGTTTTTATTTATTGGTCAGGGTGTTGCAGATGCTAAAACATTTTGGTCTCCATTTGGCAGGTGGGAAATGCTCACAGCAAGTTGAACTCAGTGGGGAAAATATCAATATCACTTACAAGCCTGATGGGACACATATAGCTGTTGGGAACAGGGTACTCATTATTTCTGTCATTTATTAATTCCTAAAATAAGCACTTCTATATTCTATTATCTTAGCTGCTTATAGATATGTATGTAGTCAAAATGAGTGCAGACAAAAACAGAAATGTATCTTAGCTTCATCTCTTTCTATTGCATGTATTTTCTATCATTCATATTTATGATGGTGAGTTTTATTGGTGATATTCTGTGGAGTTCCGTACTATCTGCTTATCATGGAGATTAATTTGGTGCATATTCTTATTCAGTTTTTTTATGGTACAGGATGATGAGCTAACAATCTTGGATGTTCGCAAGTTTAAGCCTATTCATAAGCGCAAGTTTAATTATGAGGTAGTCTCTTCCCCAGCTAAGTTTACGGTGATTCATAAGCCCATGTAGTAGTTATCAAAAGTTATGTAAACTTGACTTGTGCTGTACTGGGTTTAAGCCTACTGCATTTGGTCCGTCTCTTTCTCTTACTGCTGGCCCTTGCTTTTGTGATGCTAGTGTTCCAATGTGAATCAAGTTTCTCAGATGTGTTGCTGCAAGTTTTGACCTTTATCTGTTGGACATTCTGAGAAAGGACTTGAAATCACAGAACACCAGTTCTTCCTCTTGGCTTGATCTTTCTTCCCTCCAAGGGTGTAGAGACAATTACATGTTAATGCAGAAAATTCATGTGTAATGCATATATTTCTCCTAACTTGATTTTCTTGTGGTATGAGTAAATAACCATTTCCTCTTAAACTTAGAGATGCTCTTGAAGTATGGGTGAATGCTTCTGCTTCTCAGGACAAGTCTTTAACTCTAATTTGCCAAAGCTCTTCATATCTATTCAATTCATCCGTATTCTTGATCGTGCATGTAACCGGCCTCTTGTTTCTGGAATTAGTTGCAAAGAGTTCACCTGTTAAAGAAAAGTAATTAGTTGCTCAATGCATTGAGTCATATTCCTACTGGGGCATTCAGCATGATGGGTTCCATACTGTTAACACTTTTGAACTCTCCCAAGTTCCCATGGTTACACTTTTGCTTCATCAGGTAAATGAGATTGCATGGAACACGGGTGGCGATATGTTCTTTCTTACAACTGGAAATGGTGAGTACAAATTAGTGAGTTGGCTTTGCTGGCATTCAGTAAGAAAAGGCTTGAATTTCCAATATGAACTTTTCTCAGTGTCAAAGTTTTCGTGTTTGTCATATAGGAACTGTGGAAGTCTTAGCTTATCCGTCTCTACAAGCTGTTAACACGCTTAATGCTCACACTGCTGGTTGTTACTGCATTGCAATTGATCCACTAGGAAGGTGAGCTTGATATTTTGCTGCAAGTATAATTCCTTTGTGCTATGGTTTAAATGAGACTTACAGAGGCCTCAGACAGCTCAAGAATATGGACATTCCTTTCTAGTAATGGGAAAATTCTTTGGCACTAGTTCCAAGTAGCTAGTACCTTGTGGCACTATGATGTCAATAAGGCTTCTGGCACAGGACCATGCATATGGTCACTCTATGATGTCATTATGAGTTTTGTTGAAGGACCATTCATAGATTCTCTCAGACCATGAGTGGGGGTTTTGATCTGAACTAATTATACCTTATTTTGATTCAATATTACACAAGATATTTTGCTGTTGGAAGTGCTGATTCATTGGTCAGCCTTTGGAGCATCAAGGAGATGCTATGTCTTCGAACATTTACAAAACTTGAGTAAGTTCTCAAGTATGTTTTCGTCCATCTTATAATTTATACGAGTGTCCTGGGTTAGGTAGCTGATCTTTAATTTTTTCTTTTTGCTACTCAGGTGGCCAGTTCGGACAATAAGTTTCAATCACACAGGAGACTACATTGCCTCTGCTAGTGAAGATTTGTTTATTGATATTGTATGTTGTCAAGAACCTGTATACTCTTCTTCTACATAGAAAATCTCTTCAACCTTTCAATAACTTAGCCATTAGTCTCTTCTACATAGAAAATCTCTTTAACCTTTCGATAACTCAGCCATTATTTTGCACAGGCTAATGTCCAATCTGGACGGTCAGTTCACCAAATTCCATGTCGTGCTGCCATGAACAGTGTTGAATGGAATCCAAAACACAACTTGCTTGCCTTTGCCGGGGATGATAAGAACAAATACCAGGCTGATGAAGGTGTCTTTCTGACCTAAGAAAGAACTCTTTACGAGTTCCAAGGCCTAATATTTTTCTTTTCTATGTAGGTGTGTTTCGCATATTTGGCTTTGAGA--GC-GCAT--AGAGCCCTGATGAAAGG-----TTA-T-AAA-AGAGGCCTGAAAAAGATCTTGTATAATTTATGATGAAGAAAGCAAAATTTTCAGATGAACAACTTGTTTACATTGATTTTGTAACATTTATTACATGTCATTTTTGAAAAATGCTGAAAGAGACGTT</genome_strand>
        <mrna_strand>AAGCAG-AGAGTAATGGCGGAAACAATACCCTTCAAAAATCTTCATAGCAGAGAGTACCAGGGACACAAGAAGAAG.............................................................................................................................................GTGCATTCGGTGGCATGGAACTGCAGTGGCACGAAATTAGCTTCAGGTTCTGTGGATCAAACAGCTCGTATTTGGCAAATTGAGCCTCATGGTCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGGTAAAAGATGTTGAATTAAAGGGTCACACCGACAGTGTGGACCAGTTATGTTGGGATCCAAAACATGCAGAATTGATAGCTACAGCATCTGGTGACAAGACAGTTCGATTATGGGATGCCCGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAAATGCTCACAGCAAGTTGAACTCAGTGGGGAAAATATCAATATCACTTACAAGCCTGATGGGACACATATAGCTGTTGGGAACAGG...............................................................................................................................................................................................................................................................................GATGATGAGCTAACAATCTTGGATGTTCGCAAGTTTAAGCCTATTCATAAGCGCAAGTTTAATTATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGAGATTGCATGGAACACGGGTGGCGATATGTTCTTTCTTACAACTGGAAATG..........................................................................................................GAACTGTGGAAGTCTTAGCTTATCCGTCTCTACAAGCTGTTAACACGCTTAATGCTCACACTGCTGGTTGTTACTGCATTGCAATTGATCCACTAGGAAG...........................................................................................................................................................................................................................................................................................................................ATATTTTGCTGTTGGAAGTGCTGATTCATTGGTCAGCCTTTGGAGCATCAAGGAGATGCTATGTCTTCGAACATTTACAAAACTTGA..............................................................................................GTGGCCAGTTCGGACAATAAGTTTCAATCACACAGGAGACTACATTGCCTCTGCTAGTGAAGATTTGTTTATTGATATT......................................................................................................................................GCTAATGTCCAATCTGGACGGTCAGTTCACCAAATTCCATGTCGTGCTGCCATGAACAGTGTTGAATGGAATCCAAAACACAACTTGCTTGCCTTTGCCGGGGATGATAAGAACAAATACCAGGCTGATGAAG....................................................................GTGTGTTTCGCATATTTGGCTTTGAGAGCGCAGCATAAAAAGCCCTGATGAAAGGTTATTTTATTAAAAGAGAGGCCTGAAAGAAATCTTGTATAATTTATGATGAAGAAAGCAAAATTTTCAGATGAACAACTTGTTTACATTGCTTTTGTAACATTTATTACATGTCAGGTTTGAAAAATGCTGAAAGAGACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319063" ref_strand="+" ref_description="SGN-U319063        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | KH domain-containing protein | chr5:22742688-22745569 FORWARD | Aliases: MDA7.20, MDA7_20(evalue: 6e-112, score=401) genbank/nr: gi|15241136|ref|NP_200425.1| KH domain protein [Arabidopsis thaliana] gi|9758634|dbj|BAB09296.1| RNA-binding protein-like [Arabidopsis thaliana] gi|24030184|gb|AAN41273.1| putative RNA-binding protein [Arabidopsis thaliana](evalue: 4e-110, score=401)">
      <seq>ggcgattggcggccaatcggccgaattgagaaacagagggactcctttttggaaagtgaaaagtaggtgaatctggcagtcatcggattctgtcgccgccggtgaagatgtcttccggaagatacatggcctactcaccatctccgtctgctcctcagtctcctcatatcgccggacttcgctctgcttcctctgccatcgccgagcaagagaagtatctctcagagttacttgcagaacgccacaaactcggcccatttgtgcccgtccttcctcattgctatcgattgctgaatcaggaacttttgcgtgtaactacactgttggggaatgcatcagtgttagatcaaaatgggcttgaacatgctagccccctggcttcaggaggaatgttttcaaatggaggagctaatgtggacagatgggcatcaccatttcaatcagaaatatcaggtttaatgcactccccgtcgactcataactggcttaatactcaaagtaactcatcaggcctcatagtgaagcgaacactcagaattgatataccggtggatcaatatcctagtttacctttgcagtacaatttcgtgggccgacttctgggccctagagggaactctctaaagcgggtggaagctactactgaatgccgggttctgataagaggacgcggaagcatcaaagatccagtaaaggaagaaatgatgagaggcaaaccgggatatgagcacctgaatgagcctcttcatgttattgtggaagctgaactgccagtggagatcattgatgcccggctattgcaagcacgtgagatattggaagatctgctcaagcctatggatgagtcacaggatttctacaaaaaacagcagttgcgtgaacttgcaatgctgaatggtactcttcgtgaagaaggttctcaaatgtctggttctgtttcccccttccacaacagtcttagtcttgggatgaagagggctaaaaccagagtgtgatctttgtgtagtgggatttggagcttgtgcattgatacacaccactaaccaaccagcaggtcctatatgcaaccgatgttgctataacgtcttatgcctcgcactgccatcggggcactggtgctgttctgtgccagttctaacttgtctctataatgatatgaagtgtgtttatgttccggtcagggaagatttagtaacagtaaagccatagttgtggaccgcttagaggtttgcttgatgtcgtcagagcggtgtcttaccaacgtcattgtattattccattaatttctagtttgtgatttgaaggtgtgggaatgactgtaatgcgagcgaggcgtgtctgtactgataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="+" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="40729" stop="47771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41041" g_stop="41224" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="214" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41225" i_stop="42620" i_length="1396">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42621" g_stop="42706" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="300" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42707" i_stop="44621" i_length="1915">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44622" g_stop="44767" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="446" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44768" i_stop="45608" i_length="841">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45609" g_stop="45728" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="566" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45729" i_stop="45800" i_length="72">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45801" g_stop="45929" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="695" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45930" i_stop="46688" i_length="759">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46689" g_stop="46832" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="839" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46833" i_stop="46943" i_length="111">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46944" g_stop="47469" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="840" r_stop="1365" r_length="526" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="+" ref_id="SGN-U319063" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1335</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41041" e_stop="41224"/>
          <exon e_start="42621" e_stop="42706"/>
          <exon e_start="44622" e_stop="44767"/>
          <exon e_start="45609" e_stop="45728"/>
          <exon e_start="45801" e_stop="45929"/>
          <exon e_start="46689" e_stop="46832"/>
          <exon e_start="46944" e_stop="47469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAGGGACTCCTTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAAGTGCGTTTTTCCTTTTTCTCTAACAACTTTGATTTTTTTGTTTGAAGTCTTCGTCTTTGTTGATTCAGTGGATCGTGCTGAAATTGGCTAAGCATATGTCCGATCTTCAGCTTTTTTGTTCCTTAATTTGTTGCTTTAATTTTACTATGTGGTTGTGATTTGTGACTTGATTTTCATTTTTTGGTTCAACGATTTATAAGTTGATTTATCTGAAAAGATCTGGTTTAGCTTCTTACTTAGTTAAAAGCATCAGTTTAAGGTTCAATATACTTTAACGCAATTTCAAACAATCTGGATTGGTTCTATGAATTCCTTGGATACTTTGATCAGGTTTGTTCCTCCAAAAAGTTGGTTTCTTTGATCTTATCAGAAGTTGCTTGTTACTGTTTCTTCTTCTTCGGTTCATTTTGTCAATTCTAATACTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTATTTACTTCTATCAGATGTTGATTGTTGCTGTTTCTTTTTCCTTCGGATCATTTTTTCAATTCAAATACTTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTCTTTGCTTCTATCGAATGTTGATTTTTGCTGTTTCTTCTTCCTTTGGATCATTTTTTTAATTCAAATACTTTTTTGGGTTGGTTGCTCTCGAAAAGTTTGTTTCTTTGCTTCTATCAGATGTTGATTGTTGCTGTTTCTTCTTCATTCGGTTCATTTTTTCAATTCAAATACTTTTTTGGGTTGGTTGCGTCGAGAAGTTTGTATCTTTGCTTCTATCAGATGTTGATTGTTATTATTTTTTCCCCTTCATTCAGAGAATTTGGTCCAATCTTCTCATAAGAAATTAAGAGAGGTGCAATTGTAAAGAAAAGATTCACTTTCTTGCTTGAATTACTCGGGCATTTATAACCCAAGAAGACTCTAGCACTTCGGCCTTGCAATAGCATTTTTTGTATGATCCCTTTTTCCCTACTTTGCTGATTGATAGAGTGGATCCGGGATTTTGAGTTGGCGGGTGTGGAGTACCACTGCACCCACTACTACTTTGTGGTGGTCGATGCAACTTTTGGTAAATGATTCAATTTGCTGCAGCCACTGACCAAATACTGCAACCCTGTCCTTCCGATTTGCATTTTGTTCCTATCTTAAGTGAACTTGTCTGCTTATTTTTGCTTATTCTAGTGCATCTTATGTGATTGACCAAATAGGAGATCTCGCTGCTCTATGTGCATTGTTTTTTCTCGATCTTCAGAAGATTGACAATAGCACAAACTAAATTAATTGGACTATCAAACTTGGAACAACCATCTTTTAAAGAGATACTGATGGTTTTCTTCTTATGTGTACCTATACCATAATTTGTTGCGAGTATTTAATTTGTCAATGTGTGTTAACAGGTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGGGTGAGTAGGAAGTTGAATTTTGATTAGTTCAGCCACTTGTGCTTCTGATATCAAAAAGTTTGTTTTATTGCTCAACCTGAGAGAAATCAAAGATTAGAGAATGAGGTGAAAAATATTTTAAGTTGATGAGTACATTCTTTTCATCTGAACAAAGATGATAAATCCATTGTATACGTCTGTTTTTGCTAATTGGGTGGAAGTTTAGGTCAAGTTTGGATCTTCTATGTTAAGTCAGTCAGCACTTTTTTCTGGACGACTCCCAACACTTTTTGTATATTCCATGATTGTCTTTTTGTTATTCATGTTTAACTAGATATTTGTCCCATAAAACGGGTATTAGTATCTCTAATTTCCTCCTCCTATGCAGTTTCTAAATAAAAATAAACAATTCCTTCTTCTATGGTCAGCTGTGGTCCGCTTACCGAGTGTATAGACCTACATGTCGTAATAGGTACCAAGGGAATTACATTTTACTTAACTGGGAAGCTTGTCACAAATTTGTTTATAAATAATGTTGTAACCACCCCCTGGCAAGAAAGAGAAGAGGTATAGAGAGTCATGGTATTGAATCCATGTTTATTTCCTATATGTTGGAAATAAACACTCCATTGTCCCATTCCAGTTCAAAGATAAAAAAGAACTTCACTATCCTTTTGTTACACCCTCCCACCCCCACCCCCCAAAGTATCCTATAGGTTTTTTCTTCACATTTATAATATGCTTCACTGACAATTTAAACTGTGATACCACACATATTATTTGTGAGCCTCTAAGTTTTAGATGGAAAGTGTTATTAAAATCATCTTTTGGCCAGATTGTGGGAAATTTGCTTATAGTTTTCAATGCAAATCCCAGCTTATTTCACCATCAGCCTGTCATATATTCTTGGCTGTACCGGGAAGTTTTCAAGTACTATTTAGCAGTGTAGCCTGTAACGGATCTGGAATAGAAAGAAACACGACACTAGTAGTATACAATATTAAGATGAGGACCATGAAATTGATCCTCGAAGTATAAGAAGCATGATGTGCATTGTGTGAAGCCTGTTTAGTATGAAGGGGAAGGTTGAATCGTTGTGTGATTAGTAATAACGCTCAAGTTTGAGCGGTGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGTTTTAACCATTCATCCACAAATTGGTCATCTTAGGAGTCTCTTTTGTCCATAACATTTAACTGATTGCTTTAACAATTCATTTTTTTTCTATAAATCCGTGAGATAACTAACCAATGAAGGATCGTGTTGTTGTCCATATTGTGGTGGCTGCTAACTGATTTATTAACCACTGCTAACTGGTACGTCTTATTCTTGGAAATTGACCTTTTTGAAGCAGAACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAAGTATGGATACTAACTATTAACATAACCTCTTTTAGATCTGATTTTATATGTTTGAAAAGCTTTTCTGACAAAGGTTTCTAATTTCCATGCTAACTTGATTTCTTATTAAGTGTTTTAACTTCAATCTCCACTTGTCTCGTGACAGGTAGGTGAAGCTAACAACAACAAGGTTGATAAATAGTTTAGCTGAGCATCTGATTTAGAATTTTGCTTTTAGTTACTAGGAGCCAGCTTTCCGATGAGATCTAGATGTGTATGACACCACAAAAGCATCTCCTTCTTTGTTGATTCAAATAATTAACTCAGTAGATTGTGAGGGTCTTGTTTCACAGAATTCTGCTAACACATACGGGATGCGATCTAGATGTCCACGAGACTATTTTACGATGTGAGCTAGATGTCTATGACTCCACAGGAGCGTATCCTTACTTTCGATTCACTTATGGATGCTTTGATTCATTCTGAAACACTGGAGATTGAAAATCATAAGCTGGTTGTTTCCAAATTTATTAGAGTCATCAAGATCCTGTTATGTTTTTAAGGGTGTGCTTTCTGATTCCTCTTGTAGTATATGTCTATCTTATCTCTGTTAATGTTGCATTCGTGATTAGTAGATTATTGTCTTTATTTTGTTTCAACGTGTGTAGATCTACTGTGTGTTTTCTTATTCCTCTTGTTGTCTTGGATTTGGAATGTCTTAAATGTTCTGAATCATATGGAGGTTCAGGGTTAGTCATCTCACAAAAAGGAGGCTTCCGGGTTTATCTTTAGTGTAGTACAAAAGAGAGGGCACAAGGTGTGGATTTCTCTGTTTAACCGATTTTGTGGTTATCATATCCAGATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGTGTATGTACTATTATCTATTTTCTCATTCTGCTTATCATGACTTCTCTACATCATGTTGAATGTGTGTTTTAGTTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAGGTAATATTATGAACTGATGGAATATTTGAGTGGCCATGGAATAATCTCTATTCCAGTCCATTTTGAAGTTCTTATTAAATTTAGATTAGTTACCCTTTTCTGGCTTGTTTAGTTGATTCATCTGTGATATTAAGGTGGGCCCTTACCTCCATAGGTTGGTACGAAGTTGATGTATCAAAAGTTCTTTTGGTGGAGGTCAAGTTTTGATTCCGTCATTAGAATTTTCAGCAACTCTTGTTAGTGGCATTGGATAGTCTGATGTCCCAGTCAAATTTTACATCCGGATAGGCGTGAGAGATTCTAGAGTTAAGGAGGGGCTTGCGGATAATTTTATAACACCTTTAGATATTTCAAGAAAGCTTTAGAATATCCTAGATTATCTAGATTTTTCTAGAGAGGGAACAAAGTGTAAATATTTTAGGGACTTGTAAAGTAATTTTAAATTGCACTTAGCCCCTTAGTAGTATAAACAGAGGTGTCATTCATTTGCAATGCATCCCTCCTCAAGTGTAAAGCAGTCTTCCAAGCTAATACAAAGCCATCCTCAAAACTTCCCAAATCTTTCGAAGTCTTTCTTTGCATCGCTAAAGGCTTACTTGAGCTTACGAGATCTTGAAACAATAGTAAGTTGTCAAGGGTTGCACGGAGGTGTAGTGAAAACTCCAAGTCCGTGACGCCGAGGTGGTAATTGTACAATTTTTCCATCCGGAATCATCTTTCTTAACATTTAACATAATATTTTACTTCGTCATTTTGAAGGAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCTCTTCATGTTATTGTGGAAGCTGAACTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGAAGATCTGCTCAAGCCTATGGTAAATTCAACATATAGATTGCAAGTTGTCATTGTTTGTCTACTAACTATCACACATTTTCCCAAGTTGAGAGATATTCATTATTATTTCTTCATTTTCCTCCAAATGCAGGATGAGTCACAGGATTTCTACAAAAAACAGCAGTTGCGTGAACTTGCAATGCTGAATGGTACTCTTCGTGAAGAAGGTTCTCAAATGTCTGGTTCTGTTTCCCCCTTCCACAACAGTCTTAGTCTTGGGATGAAGAGGGCTAAAACCAGAGTGTGATCTTTGTGTAGTGGGATTTGGAGCTTGTGCATTGATACACACCACTAACCAACCAGCAGGTCCTATATGCAACCGATGTTGCTATAACGTCTTATGCCTCGCACTGCCATCGGGGCACTGGTGCTGTTCTGTGCCAGTTCTAACTTGTCTCTATAATGATATGAAGTGTGTTTATGTTCCGGTCAGGGAAGATTTAGTAACAGTAAAGCCATAGTTGTGGACCGCTTAGAGGTTTGCTTGATGTCGTCAGAGCGGTGTCTTACCAACGTCATTGTATTATTCCATTAATTTCTAGTTTGTGATTTGAAGGTGTGGGAATGACTGTAATGCGAGCGAGGCGTGTCTGTACTGATAAAAAAAGAAAGAAAAA</genome_strand>
        <mrna_strand>AAACAGAGGGACTCCTTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGGTTTAATGCACTCCCCGTCGACTCATAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGT........................................................................TTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCTCTTCATGTTATTGTGGAAGCTGAACTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGAAGATCTGCTCAAGCCTATG...............................................................................................................GATGAGTCACAGGATTTCTACAAAAAACAGCAGTTGCGTGAACTTGCAATGCTGAATGGTACTCTTCGTGAAGAAGGTTCTCAAATGTCTGGTTCTGTTTCCCCCTTCCACAACAGTCTTAGTCTTGGGATGAAGAGGGCTAAAACCAGAGTGTGATCTTTGTGTAGTGGGATTTGGAGCTTGTGCATTGATACACACCACTAACCAACCAGCAGGTCCTATATGCAACCGATGTTGCTATAACGTCTTATGCCTCGCACTGCCATCGGGGCACTGGTGCTGTTCTGTGCCAGTTCTAACTTGTCTCTATAATGATATGAAGTGTGTTTATGTTCCGGTCAGGGAAGATTTAGTAACAGTAAAGCCATAGTTGTGGACCGCTTAGAGGTTTGCTTGATGTCGTCAGAGCGGTGTCTTACCAACGTCATTGTATTATTCCATTAATTTCTAGTTTGTGATTTGAAGGTGTGGGAATGACTGTAATGCGAGCGAGGCGTGTCTGTACTGATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336713" ref_strand="+" ref_description="SGN-U336713        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | KH domain-containing protein | chr5:22742688-22745569 FORWARD | Aliases: MDA7.20, MDA7_20(evalue: 1e-58, score=223) genbank/nr: gi|15241136|ref|NP_200425.1| KH domain protein [Arabidopsis thaliana] gi|9758634|dbj|BAB09296.1| RNA-binding protein-like [Arabidopsis thaliana] gi|24030184|gb|AAN41273.1| putative RNA-binding protein [Arabidopsis thaliana](evalue: 8e-57, score=223)">
      <seq>tttggaaagtgaaaagtaggtgaatctggcagtcatcggattctgtcgccgccggtgaagatgtcttccggaagatacatggcctactcaccatctccgtctgctcctcagtctcctcatatcgccggacttcgctctgcttcctctgccatcgccgagcaagagaagtatctctcagagttacttgcagaacgccacaaactcggcccatttgtgcccgtccttcctcattgctatcgattgctgaatcaggaacttttgcgtgtaactacactgttggggaatgcatcagtgttagatcaaaatgggcttgaacatgctagccccctggcttcaggaggaatgttttcaaatggaggagctaatgtggacagatgggcatcaccatttcaatcagaagtaggtgaagctaacaacaacaagatatcaggtttaatgcactccccgtcgactcagaactggcttaatactcaaagtaactcatcaggcctcatagtgaagcgaacactcagaattgatatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="+" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="40758" stop="46009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41058" g_stop="41224" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41225" i_stop="42620" i_length="1396">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42621" g_stop="42706" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="253" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42707" i_stop="44621" i_length="1915">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44622" g_stop="44767" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="399" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44768" i_stop="44912" i_length="145">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44913" g_stop="44936" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="423" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44937" i_stop="45608" i_length="672">
            <donor d_prob="0.899" d_score="0.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45609" g_stop="45709" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="524" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="+" ref_id="SGN-U336713" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41058" e_stop="41224"/>
          <exon e_start="42621" e_stop="42706"/>
          <exon e_start="44622" e_stop="44767"/>
          <exon e_start="44913" e_stop="44936"/>
          <exon e_start="45609" e_stop="45709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAAGTGCGTTTTTCCTTTTTCTCTAACAACTTTGATTTTTTTGTTTGAAGTCTTCGTCTTTGTTGATTCAGTGGATCGTGCTGAAATTGGCTAAGCATATGTCCGATCTTCAGCTTTTTTGTTCCTTAATTTGTTGCTTTAATTTTACTATGTGGTTGTGATTTGTGACTTGATTTTCATTTTTTGGTTCAACGATTTATAAGTTGATTTATCTGAAAAGATCTGGTTTAGCTTCTTACTTAGTTAAAAGCATCAGTTTAAGGTTCAATATACTTTAACGCAATTTCAAACAATCTGGATTGGTTCTATGAATTCCTTGGATACTTTGATCAGGTTTGTTCCTCCAAAAAGTTGGTTTCTTTGATCTTATCAGAAGTTGCTTGTTACTGTTTCTTCTTCTTCGGTTCATTTTGTCAATTCTAATACTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTATTTACTTCTATCAGATGTTGATTGTTGCTGTTTCTTTTTCCTTCGGATCATTTTTTCAATTCAAATACTTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTCTTTGCTTCTATCGAATGTTGATTTTTGCTGTTTCTTCTTCCTTTGGATCATTTTTTTAATTCAAATACTTTTTTGGGTTGGTTGCTCTCGAAAAGTTTGTTTCTTTGCTTCTATCAGATGTTGATTGTTGCTGTTTCTTCTTCATTCGGTTCATTTTTTCAATTCAAATACTTTTTTGGGTTGGTTGCGTCGAGAAGTTTGTATCTTTGCTTCTATCAGATGTTGATTGTTATTATTTTTTCCCCTTCATTCAGAGAATTTGGTCCAATCTTCTCATAAGAAATTAAGAGAGGTGCAATTGTAAAGAAAAGATTCACTTTCTTGCTTGAATTACTCGGGCATTTATAACCCAAGAAGACTCTAGCACTTCGGCCTTGCAATAGCATTTTTTGTATGATCCCTTTTTCCCTACTTTGCTGATTGATAGAGTGGATCCGGGATTTTGAGTTGGCGGGTGTGGAGTACCACTGCACCCACTACTACTTTGTGGTGGTCGATGCAACTTTTGGTAAATGATTCAATTTGCTGCAGCCACTGACCAAATACTGCAACCCTGTCCTTCCGATTTGCATTTTGTTCCTATCTTAAGTGAACTTGTCTGCTTATTTTTGCTTATTCTAGTGCATCTTATGTGATTGACCAAATAGGAGATCTCGCTGCTCTATGTGCATTGTTTTTTCTCGATCTTCAGAAGATTGACAATAGCACAAACTAAATTAATTGGACTATCAAACTTGGAACAACCATCTTTTAAAGAGATACTGATGGTTTTCTTCTTATGTGTACCTATACCATAATTTGTTGCGAGTATTTAATTTGTCAATGTGTGTTAACAGGTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGGGTGAGTAGGAAGTTGAATTTTGATTAGTTCAGCCACTTGTGCTTCTGATATCAAAAAGTTTGTTTTATTGCTCAACCTGAGAGAAATCAAAGATTAGAGAATGAGGTGAAAAATATTTTAAGTTGATGAGTACATTCTTTTCATCTGAACAAAGATGATAAATCCATTGTATACGTCTGTTTTTGCTAATTGGGTGGAAGTTTAGGTCAAGTTTGGATCTTCTATGTTAAGTCAGTCAGCACTTTTTTCTGGACGACTCCCAACACTTTTTGTATATTCCATGATTGTCTTTTTGTTATTCATGTTTAACTAGATATTTGTCCCATAAAACGGGTATTAGTATCTCTAATTTCCTCCTCCTATGCAGTTTCTAAATAAAAATAAACAATTCCTTCTTCTATGGTCAGCTGTGGTCCGCTTACCGAGTGTATAGACCTACATGTCGTAATAGGTACCAAGGGAATTACATTTTACTTAACTGGGAAGCTTGTCACAAATTTGTTTATAAATAATGTTGTAACCACCCCCTGGCAAGAAAGAGAAGAGGTATAGAGAGTCATGGTATTGAATCCATGTTTATTTCCTATATGTTGGAAATAAACACTCCATTGTCCCATTCCAGTTCAAAGATAAAAAAGAACTTCACTATCCTTTTGTTACACCCTCCCACCCCCACCCCCCAAAGTATCCTATAGGTTTTTTCTTCACATTTATAATATGCTTCACTGACAATTTAAACTGTGATACCACACATATTATTTGTGAGCCTCTAAGTTTTAGATGGAAAGTGTTATTAAAATCATCTTTTGGCCAGATTGTGGGAAATTTGCTTATAGTTTTCAATGCAAATCCCAGCTTATTTCACCATCAGCCTGTCATATATTCTTGGCTGTACCGGGAAGTTTTCAAGTACTATTTAGCAGTGTAGCCTGTAACGGATCTGGAATAGAAAGAAACACGACACTAGTAGTATACAATATTAAGATGAGGACCATGAAATTGATCCTCGAAGTATAAGAAGCATGATGTGCATTGTGTGAAGCCTGTTTAGTATGAAGGGGAAGGTTGAATCGTTGTGTGATTAGTAATAACGCTCAAGTTTGAGCGGTGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGTTTTAACCATTCATCCACAAATTGGTCATCTTAGGAGTCTCTTTTGTCCATAACATTTAACTGATTGCTTTAACAATTCATTTTTTTTCTATAAATCCGTGAGATAACTAACCAATGAAGGATCGTGTTGTTGTCCATATTGTGGTGGCTGCTAACTGATTTATTAACCACTGCTAACTGGTACGTCTTATTCTTGGAAATTGACCTTTTTGAAGCAGAACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAAGTATGGATACTAACTATTAACATAACCTCTTTTAGATCTGATTTTATATGTTTGAAAAGCTTTTCTGACAAAGGTTTCTAATTTCCATGCTAACTTGATTTCTTATTAAGTGTTTTAACTTCAATCTCCACTTGTCTCGTGACAGGTAGGTGAAGCTAACAACAACAAGGTTGATAAATAGTTTAGCTGAGCATCTGATTTAGAATTTTGCTTTTAGTTACTAGGAGCCAGCTTTCCGATGAGATCTAGATGTGTATGACACCACAAAAGCATCTCCTTCTTTGTTGATTCAAATAATTAACTCAGTAGATTGTGAGGGTCTTGTTTCACAGAATTCTGCTAACACATACGGGATGCGATCTAGATGTCCACGAGACTATTTTACGATGTGAGCTAGATGTCTATGACTCCACAGGAGCGTATCCTTACTTTCGATTCACTTATGGATGCTTTGATTCATTCTGAAACACTGGAGATTGAAAATCATAAGCTGGTTGTTTCCAAATTTATTAGAGTCATCAAGATCCTGTTATGTTTTTAAGGGTGTGCTTTCTGATTCCTCTTGTAGTATATGTCTATCTTATCTCTGTTAATGTTGCATTCGTGATTAGTAGATTATTGTCTTTATTTTGTTTCAACGTGTGTAGATCTACTGTGTGTTTTCTTATTCCTCTTGTTGTCTTGGATTTGGAATGTCTTAAATGTTCTGAATCATATGGAGGTTCAGGGTTAGTCATCTCACAAAAAGGAGGCTTCCGGGTTTATCTTTAGTGTAGTACAAAAGAGAGGGCACAAGGTGTGGATTTCTCTGTTTAACCGATTTTGTGGTTATCATATCCAGATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACC</genome_strand>
        <mrna_strand>TTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAA.................................................................................................................................................GTAGGTGAAGCTAACAACAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336712" ref_strand="+" ref_description="SGN-U336712        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | KH domain-containing protein, qkI-7, Mus musculus | chr4:13372893-13378398 REVERSE | Aliases: M3E9.90, M3E9_90(evalue: 1e-62, score=236) genbank/nr: gi|15236738|ref|NP_194378.1| KH domain protein [Arabidopsis thaliana] gi|7486790|pir||T05056 hypothetical protein M3E9.90 - Arabidopsis thaliana gi|2982458|emb|CAA18222.1| putative protein [Arabidopsis thaliana] gi|7269500|emb|CAB79503.1| putative protein [Arabidopsis thaliana](evalue: 1e-60, score=236)">
      <seq>aagtgggtgaatctggcagtcatcggattctgtcgccgccggtgaagatgtcttccggaagatacatggcctactcaccatctccgtctgctcctcagtctcctcatatcgccggacttcgctctgcttcctctgccatcgccgagcaagagaagtatctctcagagttacttgcagaacgccacaaactcggcccatttgtgcccgtccttcctcattgctatcgattgctgaatcaggatatcaggtttaatgcactccccgtcgactcagaactggcttaatactcaaagtaactcatcaggcctcatagtgaagcgaacactcagaattgatataccggtggatcaatatcctagtttacctttgcagtacaatttcgtgggccgacttctgggccctagagggaactctctaaagcgggtggaagctactactgaatgccgggttctgataagaggacgcggaagcatcaaagatccagtaaaggaagaaatgatgagaggcaaaccgggatatgagcacctgaatgagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="+" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="40771" stop="47036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41071" g_stop="41224" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41225" i_stop="42620" i_length="1396">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42621" g_stop="42706" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="240" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42707" i_stop="45608" i_length="2902">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45609" g_stop="45728" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="360" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45729" i_stop="45800" i_length="72">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45801" g_stop="45929" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="489" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45930" i_stop="46688" i_length="759">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46689" g_stop="46736" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="537" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="+" ref_id="SGN-U336712" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41071" e_stop="41224"/>
          <exon e_start="42621" e_stop="42706"/>
          <exon e_start="45609" e_stop="45728"/>
          <exon e_start="45801" e_stop="45929"/>
          <exon e_start="46689" e_stop="46736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAAGTGCGTTTTTCCTTTTTCTCTAACAACTTTGATTTTTTTGTTTGAAGTCTTCGTCTTTGTTGATTCAGTGGATCGTGCTGAAATTGGCTAAGCATATGTCCGATCTTCAGCTTTTTTGTTCCTTAATTTGTTGCTTTAATTTTACTATGTGGTTGTGATTTGTGACTTGATTTTCATTTTTTGGTTCAACGATTTATAAGTTGATTTATCTGAAAAGATCTGGTTTAGCTTCTTACTTAGTTAAAAGCATCAGTTTAAGGTTCAATATACTTTAACGCAATTTCAAACAATCTGGATTGGTTCTATGAATTCCTTGGATACTTTGATCAGGTTTGTTCCTCCAAAAAGTTGGTTTCTTTGATCTTATCAGAAGTTGCTTGTTACTGTTTCTTCTTCTTCGGTTCATTTTGTCAATTCTAATACTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTATTTACTTCTATCAGATGTTGATTGTTGCTGTTTCTTTTTCCTTCGGATCATTTTTTCAATTCAAATACTTTTTTTGGGTTGGTTGCGTCGAAAAGTTTGTTTCTTTGCTTCTATCGAATGTTGATTTTTGCTGTTTCTTCTTCCTTTGGATCATTTTTTTAATTCAAATACTTTTTTGGGTTGGTTGCTCTCGAAAAGTTTGTTTCTTTGCTTCTATCAGATGTTGATTGTTGCTGTTTCTTCTTCATTCGGTTCATTTTTTCAATTCAAATACTTTTTTGGGTTGGTTGCGTCGAGAAGTTTGTATCTTTGCTTCTATCAGATGTTGATTGTTATTATTTTTTCCCCTTCATTCAGAGAATTTGGTCCAATCTTCTCATAAGAAATTAAGAGAGGTGCAATTGTAAAGAAAAGATTCACTTTCTTGCTTGAATTACTCGGGCATTTATAACCCAAGAAGACTCTAGCACTTCGGCCTTGCAATAGCATTTTTTGTATGATCCCTTTTTCCCTACTTTGCTGATTGATAGAGTGGATCCGGGATTTTGAGTTGGCGGGTGTGGAGTACCACTGCACCCACTACTACTTTGTGGTGGTCGATGCAACTTTTGGTAAATGATTCAATTTGCTGCAGCCACTGACCAAATACTGCAACCCTGTCCTTCCGATTTGCATTTTGTTCCTATCTTAAGTGAACTTGTCTGCTTATTTTTGCTTATTCTAGTGCATCTTATGTGATTGACCAAATAGGAGATCTCGCTGCTCTATGTGCATTGTTTTTTCTCGATCTTCAGAAGATTGACAATAGCACAAACTAAATTAATTGGACTATCAAACTTGGAACAACCATCTTTTAAAGAGATACTGATGGTTTTCTTCTTATGTGTACCTATACCATAATTTGTTGCGAGTATTTAATTTGTCAATGTGTGTTAACAGGTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGGGTGAGTAGGAAGTTGAATTTTGATTAGTTCAGCCACTTGTGCTTCTGATATCAAAAAGTTTGTTTTATTGCTCAACCTGAGAGAAATCAAAGATTAGAGAATGAGGTGAAAAATATTTTAAGTTGATGAGTACATTCTTTTCATCTGAACAAAGATGATAAATCCATTGTATACGTCTGTTTTTGCTAATTGGGTGGAAGTTTAGGTCAAGTTTGGATCTTCTATGTTAAGTCAGTCAGCACTTTTTTCTGGACGACTCCCAACACTTTTTGTATATTCCATGATTGTCTTTTTGTTATTCATGTTTAACTAGATATTTGTCCCATAAAACGGGTATTAGTATCTCTAATTTCCTCCTCCTATGCAGTTTCTAAATAAAAATAAACAATTCCTTCTTCTATGGTCAGCTGTGGTCCGCTTACCGAGTGTATAGACCTACATGTCGTAATAGGTACCAAGGGAATTACATTTTACTTAACTGGGAAGCTTGTCACAAATTTGTTTATAAATAATGTTGTAACCACCCCCTGGCAAGAAAGAGAAGAGGTATAGAGAGTCATGGTATTGAATCCATGTTTATTTCCTATATGTTGGAAATAAACACTCCATTGTCCCATTCCAGTTCAAAGATAAAAAAGAACTTCACTATCCTTTTGTTACACCCTCCCACCCCCACCCCCCAAAGTATCCTATAGGTTTTTTCTTCACATTTATAATATGCTTCACTGACAATTTAAACTGTGATACCACACATATTATTTGTGAGCCTCTAAGTTTTAGATGGAAAGTGTTATTAAAATCATCTTTTGGCCAGATTGTGGGAAATTTGCTTATAGTTTTCAATGCAAATCCCAGCTTATTTCACCATCAGCCTGTCATATATTCTTGGCTGTACCGGGAAGTTTTCAAGTACTATTTAGCAGTGTAGCCTGTAACGGATCTGGAATAGAAAGAAACACGACACTAGTAGTATACAATATTAAGATGAGGACCATGAAATTGATCCTCGAAGTATAAGAAGCATGATGTGCATTGTGTGAAGCCTGTTTAGTATGAAGGGGAAGGTTGAATCGTTGTGTGATTAGTAATAACGCTCAAGTTTGAGCGGTGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGTTTTAACCATTCATCCACAAATTGGTCATCTTAGGAGTCTCTTTTGTCCATAACATTTAACTGATTGCTTTAACAATTCATTTTTTTTCTATAAATCCGTGAGATAACTAACCAATGAAGGATCGTGTTGTTGTCCATATTGTGGTGGCTGCTAACTGATTTATTAACCACTGCTAACTGGTACGTCTTATTCTTGGAAATTGACCTTTTTGAAGCAGAACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAAGTATGGATACTAACTATTAACATAACCTCTTTTAGATCTGATTTTATATGTTTGAAAAGCTTTTCTGACAAAGGTTTCTAATTTCCATGCTAACTTGATTTCTTATTAAGTGTTTTAACTTCAATCTCCACTTGTCTCGTGACAGGTAGGTGAAGCTAACAACAACAAGGTTGATAAATAGTTTAGCTGAGCATCTGATTTAGAATTTTGCTTTTAGTTACTAGGAGCCAGCTTTCCGATGAGATCTAGATGTGTATGACACCACAAAAGCATCTCCTTCTTTGTTGATTCAAATAATTAACTCAGTAGATTGTGAGGGTCTTGTTTCACAGAATTCTGCTAACACATACGGGATGCGATCTAGATGTCCACGAGACTATTTTACGATGTGAGCTAGATGTCTATGACTCCACAGGAGCGTATCCTTACTTTCGATTCACTTATGGATGCTTTGATTCATTCTGAAACACTGGAGATTGAAAATCATAAGCTGGTTGTTTCCAAATTTATTAGAGTCATCAAGATCCTGTTATGTTTTTAAGGGTGTGCTTTCTGATTCCTCTTGTAGTATATGTCTATCTTATCTCTGTTAATGTTGCATTCGTGATTAGTAGATTATTGTCTTTATTTTGTTTCAACGTGTGTAGATCTACTGTGTGTTTTCTTATTCCTCTTGTTGTCTTGGATTTGGAATGTCTTAAATGTTCTGAATCATATGGAGGTTCAGGGTTAGTCATCTCACAAAAAGGAGGCTTCCGGGTTTATCTTTAGTGTAGTACAAAAGAGAGGGCACAAGGTGTGGATTTCTCTGTTTAACCGATTTTGTGGTTATCATATCCAGATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGTGTATGTACTATTATCTATTTTCTCATTCTGCTTATCATGACTTCTCTACATCATGTTGAATGTGTGTTTTAGTTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAGGTAATATTATGAACTGATGGAATATTTGAGTGGCCATGGAATAATCTCTATTCCAGTCCATTTTGAAGTTCTTATTAAATTTAGATTAGTTACCCTTTTCTGGCTTGTTTAGTTGATTCATCTGTGATATTAAGGTGGGCCCTTACCTCCATAGGTTGGTACGAAGTTGATGTATCAAAAGTTCTTTTGGTGGAGGTCAAGTTTTGATTCCGTCATTAGAATTTTCAGCAACTCTTGTTAGTGGCATTGGATAGTCTGATGTCCCAGTCAAATTTTACATCCGGATAGGCGTGAGAGATTCTAGAGTTAAGGAGGGGCTTGCGGATAATTTTATAACACCTTTAGATATTTCAAGAAAGCTTTAGAATATCCTAGATTATCTAGATTTTTCTAGAGAGGGAACAAAGTGTAAATATTTTAGGGACTTGTAAAGTAATTTTAAATTGCACTTAGCCCCTTAGTAGTATAAACAGAGGTGTCATTCATTTGCAATGCATCCCTCCTCAAGTGTAAAGCAGTCTTCCAAGCTAATACAAAGCCATCCTCAAAACTTCCCAAATCTTTCGAAGTCTTTCTTTGCATCGCTAAAGGCTTACTTGAGCTTACGAGATCTTGAAACAATAGTAAGTTGTCAAGGGTTGCACGGAGGTGTAGTGAAAACTCCAAGTCCGTGACGCCGAGGTGGTAATTGTACAATTTTTCCATCCGGAATCATCTTTCTTAACATTTAACATAATATTTTACTTCGTCATTTTGAAGGAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCT</genome_strand>
        <mrna_strand>AAGTGGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGT........................................................................TTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332930" ref_strand="+" ref_description="SGN-U332930        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>tggacctgcactctgggaatatctatatcatagtaagaggttatactgggcatgttatattcctcttgtaaatgtgtttggcaatggtggattgcatggccaaggacatgttagacctataaggaaattcttttcttttcatatatcttctaaatatatcttggaaatggcggaggatatgtccaaagacaagtttaaccttcaagcagtaattttttttttaattatgaccaacaacctaggagagtcctaacatttatgagattttttttactgttgtctgcctaaattcttctctccttcaattaggttagaccttctcctccttcctccgtttggttgtcatcttcgggacttcttttaataaaacggtgttgctcctagttgctgtctagcatcacaccaaaccacttaaatggcagggtttcttatttgttatagaaaatattgtatataccttgatattgaagtttggcatcttcaactgcaaaaaaaggtgccttaaagtgacagaattaatgcccctctaattgtaccgttgcgtcgtagattttctgccctatgcttcccatctctactgttccccgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="+" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="43515" stop="44704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43815" g_stop="44404" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="+" ref_id="SGN-U332930" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43815" e_stop="44404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGT</genome_strand>
        <mrna_strand>TGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322018" ref_strand="+" ref_description="SGN-U322018        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to ubiquitin-conjugating enzyme E2-17 kDa 9 (UBC9) [Arabidopsis thaliana] (TAIR:At4g27960.1); similar to ubiquitin-conjugating enzyme E2-17 kDa 9 (UBC9) [Arabidopsis thaliana] (TAIR:At4g27960.2); similar to ubiquitin-conjugating enzyme OsUBC5b [Oryza sativa (japonica cultivar-group)] (GB:XP_464900.1); similar to ubiquitin-conjugating enzyme E2 [Gossypium raimondii] (GB:AAL99225.1); similar to ubiquitin-conjugating enzyme 8 [Capsicum annuum] (GB:AAR83891.1); similar to ubiquitin carrier protein (GB:AAA34125.1); contains InterPro domain Ubiquitin-conjugating enzymes (InterPro:IPR000608) | chr1:23837231-23839199 FORWARD | Aliases: None(evalue: 2e-80, score=295) genbank/nr: gi|50929483|ref|XP_474269.1| OSJNBa0043A12.6 [Oryza sativa (japonica cultivar-group)] >gi|32488376|emb|CAE02801.1| OSJNBa0043A12.6 [Oryza sativa (japonica cultivar-group)] (evalue: 9e-80, score=299)">
      <seq>atcggccgaattagtttgcagcctcccctaaaactctcttctctcgaaagaaaaagtgataagtctcgcaaattcgttatggcttcaaagaggattcagaaggaattgaaggacttgcagaaagacccccctgcttcctgcagtgcaggccctgtaggtcaggatatgttccattggcaagctaccataatgggtccatctgacagtccgttttctgggggtgttttccttgcatctatccatttccctccagattatcctttcaagcccccaaaggtctctttcaaaaccaaggttttccacccaaacatcaacagtaatggtagtatttgtcttgatatcctaaaggaacaatggagccctgctcttactgtatccaaggtgctgctttctatttgctctttgcttactgatcccaatccagatgatcctttagtgccagagattgctcacatgtacaagacggatagaccgaagtatgagagtactgccagatcatggacccagaaatacgcaatgggttgaacacatctgtttctactttcatgaatatcatcgaacctttattctatagtagtaaataaacttaggcatggtgcacaatttatagatattggtgtttcttgttttctggtatattgccttttaagtttttgactggttaacgatttatcatttggtgaaacttaagatatgtttttgttgacnannaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="+" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="47914" stop="108174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48218" g_stop="48260" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="56" r_length="42" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48261" i_stop="49427" i_length="1167">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49428" g_stop="49519" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="148" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49520" i_stop="49916" i_length="397">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49917" g_stop="50044" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="276" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50045" i_stop="50823" i_length="779">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50824" g_stop="50928" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="381" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50929" i_stop="51018" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51019" g_stop="51346" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="709" r_length="328" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51347" i_stop="52405" i_length="1059">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52406" g_stop="52452" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="756" r_length="47" r_score="0.617"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="+" ref_id="SGN-U322018" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48218" e_stop="48260"/>
          <exon e_start="49428" e_stop="49519"/>
          <exon e_start="49917" e_stop="50044"/>
          <exon e_start="50824" e_stop="50928"/>
          <exon e_start="51019" e_stop="51346"/>
          <exon e_start="52406" e_stop="52452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGCCTCCATCAAAAACTCTCTTCTCTCGAAAGAAAAAGGTTCGTAACCCTTAAAGAATTTTTTAACCCTACCGATTTCTCTGTCTTTTTTTTTTTTTTGCAAAATTGATCATGTTTGTTTGTTATGTTTTTGTTTATCTTTTTGCTGTAATTTTTCTGGATTTATATGGTGGTTTGCCGATTTTTTGTTTTCATTGTGAAAGAAGTAGTGGATGTACTCTGTTTCTGTTTTAATGTAGGCGTGATGAGAAGAGAATTTATAAAGCTGATTCTGTTTAGTTTTGTATAGATACTAGTAGTACTAGTAAGTTGATTGTTTATTTTGAGGAACTGCTGTGATGAATCATTTTTTAATTAAAAAAAGGTTCATTTTTTAAGGTTTCACTTTCTTTAACATCAAAACAGGAAAAGGGGACTTTTTTGTTTGTTTGTGGAGTCCTGGAAAAAATTGGATTCTTGTTTTGGGTTGGTATGCGTTACTGCAGGGGCGGAGTTAGGTAGGGTTAAGGCGAACCCACCGTTTCGTTTATGTAGGAGTTTTTACGTATATATATATATATAGTGGATATTGAATTCCGTCACTTCTTTTGTGTATTTGTTTTTTCCTGTTTTTGTACTTAAGGTTGGTGAGATCCTAGGCGAATGTTTCTTGATCATTATCTGTGTGATAAAAGCTGGGATGTAATGGTTGTCCCTGTTGTTGGTGTTAATGGTTATATTAATTTATTTGGTTTCCTGTTCCAAGTTAAAATTCTGATCATTATCTCTTAGATAGAGACTAGGATGTGATGGTTTCTGCGGGTTATTAATGTTTTTGTATATTTTGAGGCCATTGATTATGGTAAAAAACCTTTCTTTAGGAAGGGGGAGAGTGTTTTACATTGTCTGGAACTTCATTGTCTTTTCTCTTGCCTGAGTTTCACCAATGTAGTGTAATAGTTCTTGCCTGCTCCTCTGCACTTACAGGAGCAGCACCGGAGAGGAAAATACATATTCTCTTTAGTAGTATATGTAGTTTCAACTCCTACGCATTGCTGCAGTTCGCTTCTCCTTAATGCAACGCTTTTACCTTGAAAAAAAGTGCATACCGTAACAACTTCTATGAAATTATTTTTGAAGTGTAATCATCTTTTACTAAAGAAAAAATTCTAATTCTTGATTATTTGGCCTTCCTTTGGCATTATTGGTTTGGATTTCTTTTTGCAGTGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAGGTATATATGAGTGTGACTTGTTCTTGCTTAATGTCTCTTTATAGCCATGCTCAATAGATATCCCCTCTCGTCTTCCCCATATCTGCAGCTTGGATTTGTGTTGGAAATATTTGAGACACATCAGATATGTGCTGGGAACAATCTGATGATTTCTTTCCCCTACCATCCGATGGGTAGTCATTACTTACTGTTCATTTGGTCCTCTTCTTCTTTGTTTCCCTTTCCCCCTTATGTTGGTTGAGGTTTGGGGTAGGATTGACTGAATAACTGGTGACAATTCTTTTGGTTCTGTTAATATTTTGTTAAGACATGTCTGCACTTGTGTTGGTATTTGTGAAAATTGTTTACTTTCAATTTGGATGCTGTTTTGGGCTGAAAATTGTTTTGCTTCTTGCAGGCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAGGTAGTTTTGAAGTCTTGCCAAGTTTTTTTTTTTTTTTGTGTGTGTTTTGTAAAATTTCTCTTGCTCCTATTTCTAACATTCCTTACCTTAGCAATTCTGTCTTGCCGTGGAGTACAACTATTTACTGCAAGAGTTTCCAGTAGATTAAACCTGAACTCCAATGTATTTGTTATACATATTTGTTATTTGATATGTTTTACATGAGCTGATGTCTCATCGGAGATAATCTATCTACCTCCACAAGGTAGGGCAATGCTGCGCACACATCACCCTCCCGAACTCCACAAGTTGGATCACACTTGATTTGGTGTTGTTGTTGTTGTATGTTAGGTCCGATAAAACTTAATGTTCCAATATTTGCTGTGATGGTAAAATATATTATTAAACCAAGTAACACAGAAATGGAGTTTTTCAAGCAACCTAGGGTTGTTCAAAAGACGCAAAATCCTGCATCTACCAGGATGGATTTGGCTCTAGACAACCATTGGCGTTCAATTCTTTTTCTTGTTGGATCTCAGTATGGATGTTTGCCATTCTTTTATTTGCCTTTGATGTGTTTTATGTAGTCCTTGCTTAAATGATTTATACTCGCGTTTCACTATATAGAAGAACCCATTCTCAGCTTCCTTGTGTATCATTGGAATAACCAAGGACAATTATGTGCTATTGTTTTTGCTTGTTACATGTAAATACCAGCAAATGCCATCTCCCTTGTATTTCTCGATTCTTAATTTGTTGCAAAACCCTGCTTTACTTTGTTTTGACTCTTAATACTGTAGGTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAGGTAAAGTATATCATGCTCTTCTTAGCTCAATTCTAAAGCATCTGCTTTATGTATATACATTTTGGTGACAATTATGCTGGGAGATTGCAGGTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATACGCAATGGGTTGAACACATCTGTTTCTACTTTCATGAATATCATCGAACCTTTATTCTATAGTAGTAAATAAACTTAGGCATGGTGCACAATTTATAGATATTGGTGTTTCTTGTTTTCTGGTATATTGCCTTTTAAGTTTTTGACTGGTTAACGATTTATCATTTGGTGAAACTTAAGATATGTTTTTGTTGACATGTGAAGTCTTCTCTTTTTTCGCTCGTCGCTATTTTTTTAAAAAATAACTTCAAGAGTTCCATGTGTAGAACTTGAGACTTGAGGATAGTGGTTAATTTTCAATTATAAGGATCGAACAAATGACTATTTGTTCATAGTTGGTTAACCTTATTCTAAGGTAAAGTTGTTGGCTGTGTGGCTAATGGACCAAATTTGGTCAATATAGTTTGTTAGTTTTTGCTTTTTAAGCAGAAAAAAGAGAGGTAACTTTATTCAGCTAACACATGGTAAGGTGGAAAAGTTAGCATGTAAAACAAGAGTAAGAACAAAGATGGTTAAATTATATTATTACAGAAGAAGAAAGGGATTTCACAAGATCCTATGAATAGGACCATAAAATGAAATGTCACCTTCATCTTTCAAATTTTTTATTCTTATATACTTAGAATGGAGAAAGAATTCAAAAATCTTTTAACTTGTTTCTCTGGTTAACACAAAGCAAAAGGAATATGTACATATTGTAGTTAGATGTATACAAAAATGTGAAGTGGTCCTCTCCATCTCTACTCTACTGTATCAGAGTGTTGTCACATTTTTAAGTTTAGCCAGCTTTATATGAGAAACAAACTAACAATATTACAAATATGTAGCCACAAAATTGGTATATAGGAGTGTATGAGACAAAAACAAGTCTCTATTGGAGTAAAACCATTTTATTTATTTATTTCAAATTCATCTCATACATTTGCTCTTGAAATCACCTTCTTGGTGAGGGTACGATTTGTCACCTTGTAATTCCCTTCCCGTTTTCCCTTTTCCTAGAAAAAACCTTTGTATATTTGATTTTTTTCAAAGATTTCTTGTCATGTTTGTCTTACTTCTTTGTATTGAGTCGACGTTCTAGTGGAAACATTATTTCCATCTCATAAAGATAGATGTAAGATATACTTGTATTATACTTTTGGAAATACTATTTTACTTTTCAAACAATTAAAGTCTGAGTTCATATCTTAGATATAAAAGTTCTAAAACCACTTATGTTGCATTTTTTATCATTTGAATTCAAATTAGTTAGATCAGCGCATCAAATAATTAAATAAAAAAGAATCAACCTAAAAACGAAAATA</genome_strand>
        <mrna_strand>TTTGCAGCCTCC-CCTAAAACTCTCTTCTCTCGAAAGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAG..........................................................................................GTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATACGCAATGGGTTGAACACATCTGTTTCTACTTTCATGAATATCATCGAACCTTTATTCTATAGTAGTAAATAAACTTAGGCATGGTGCACAATTTATAGATATTGGTGTTTCTTGTTTTCTGGTATATTGCCTTTTAAGTTTTTGACTGGTTAACGATTTATCATTTGGTGAAACTTAAGATATGTTTTTGTTGACNA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NNAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321378" ref_strand="+" ref_description="SGN-U321378        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein, similar to similar to phosphatidylinositol transfer-like protein IV (GI:14486707) (Lotus japonicus) and Phosphatidylinositol Transfer Protein GB:2780955 GI:2780955 (Saccharomyces cerevisiae) | chr1:20811927-20816506 REVERSE | Aliases: None(evalue: 0, score=410) genbank/nr: gi|30695996|ref|NP_175965.2| sec14 cytosolic factor family (phosphoglyceride transfer protein family) [Arabidopsis thaliana](evalue: 0, score=410)">
      <seq>gttgagtgagagacagaaaaagatactctctccgcatctatacatatagagagggaaaacctatatttatagagagagaaactctagagagagaaaaagccatgtatgtgtatatataggctatatagattacagtgaaaaaaactttctttttcattcctccattattcgttcattctctcagctcaaagaccacagaattttcaagaaatttatgacgttttgaagttaaagttttggtttttttccagatttttctcggaatttatgatttcagagaaaaaaaatcaatgcaaaagctccgtttaatggtcgatttagcttgcgttttgttagggttcagtagtgaaacttgagctcggatggttttcctgcggaacagcatagattgctttaaacgttaagagccacatttccttcgttattcttacatcctctttgttggaaggatgtcagaatggttggatgcatatgatgacgtaagagaaagaagatcagacttcgaggtttcagaggatgaaagacgacgttcacgaattggtactttcaagaaaaaggcattacatgcttcaaacaagttcacccactctctgaagaaaagaggaaaaaggaaagtggactacaggttcccttcagtttcaatagaggatgtacgtgatgcaaaagaggagaatgctgtctgtgaattgcgtcaaaggctgctagagcggaatttgttgccatccatacatgatgactaccatacattgttgagattcttaaaggcaagagatctcaatgttgagaaaactattccgatgtgggaagaaatgcttaactggaggaaagagtttggagcagacacaatattgcaggattttgactttgacgagttagaagaagtattgcagttttacccacaaggatatcatggggttgatagggagggaagacctgtttatatcgaaaggcttggacaagctaatccgaacaaactaatgcggataaccacaattgatcgctacataaaatatcatgtccaagaatttgaaagggcactacatgagaagttccctgcatgttctgttgctgcaaagaaaagaatctgcacaacaactacaattttggatgtgcaaggcttagggattaagaatttcacaaggacagctgctagtcttttggcggccatggcaaaaattgataatagctattatcctgagacactgcatcggatgttcattgtcatgctggccctggcttcaaaaagatgctctggccagcagctcaaaaatttctggatgcaaagactattgcaaagatacaggtgctcgatcccaaatccttgggtaaactacatgaagttattgacccaagtcaattgcctgactttttaggtggctcttgtacctgttctgacgagggtggttgcctcaggtctaacaagggtccatggagtgatcctgaagtaatgaagcttgtctataatgtagaggcaacaactgtgaaggaaatctctagaaaacttggtgaccaaaggaaaattgaatcctatatacaaatacgcccttcaaagggaaggagcagagacacatccacaagtgattcagtatcggatgctgctgacttgtgttcaccaattagaggaaatagtagctcaattttgaggctgaccccagtagatgaagaagctaggtcatcagattcaacagcctattgtagctgtgatgatgaattcagcctgggtgatcgaggtgtcactaatgagcatggattgctgcattggcaagagcagtctcctgtgagcagtccaatgaatcggtccactaatacattgcctcattctggaggtacctgggcaataaattggtgtgaaagaatccaagagaagattctgagcagctgtttcagttgtttggaaaggaaactgattcctttcatacttaaactctttgcatttattcgtagtcttcccttcgagtactggaggaaacggacaaatgtttttccgactaatgcattggaagaacgacaagggagcagttcatccattaatgatgaagcagttcaaagagtaagggagatccatccatgcatgcagcgtcttcataaattggaaaatttattggaagaaataaacaaaaagcccgctgagatcccagcagagaaggatcgaatgcttcatcagtcacttaacaggatcaagtctgtagaagttgacctagaaaaaacaaaaagggtattgcatgcgacggtattgaagcaacttgaaattacagagttattggacaacctaaaagagtcgagctttcataggcggagattgtggtgttgaatattgtaaggttggagatttgagtaccaggacaacgcgatgataaccttttactgctaaatatgctgcgaagggagatgttagcttatgcacctccagcagtggtgacaaagttttcctttttttttttttgtacaatgtcctttacagaacatgcagttgttactgcaagatgatgtttgattatactgtactgttaaacatcttgaagaaaagtttaaaagaaagccctttgagggaataaagacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="+" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="57346" stop="64194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57646" g_stop="57988" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57989" i_stop="58873" i_length="885">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.773" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58874" g_stop="58986" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="456" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58987" i_stop="59093" i_length="107">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59094" g_stop="59391" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="754" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59392" i_stop="59658" i_length="267">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59659" g_stop="59758" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="854" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59759" i_stop="59847" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59848" g_stop="60114" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="855" r_stop="1121" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60115" i_stop="60607" i_length="493">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60608" g_stop="60685" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1122" r_stop="1199" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="60686" i_stop="60787" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="60788" g_stop="60892" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1200" r_stop="1303" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="60893" i_stop="60998" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="60999" g_stop="61048" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1304" r_stop="1353" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="61049" i_stop="61142" i_length="94">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="61143" g_stop="61242" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1354" r_stop="1453" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="61243" i_stop="61358" i_length="116">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="61359" g_stop="61457" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1454" r_stop="1552" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="61458" i_stop="61539" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="61540" g_stop="61653" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1553" r_stop="1666" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="61654" i_stop="61757" i_length="104">
            <donor d_prob="0.533" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="61758" g_stop="61917" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1667" r_stop="1826" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="61918" i_stop="62706" i_length="789">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="62707" g_stop="63095" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1827" r_stop="2215" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="63096" i_stop="63205" i_length="110">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="63206" g_stop="63280" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="2216" r_stop="2290" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="63281" i_stop="63621" i_length="341">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="63622" g_stop="63889" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="2291" r_stop="2557" r_length="267" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2558" polyA_stop="2569"/>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="+" ref_id="SGN-U321378" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2559</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57646" e_stop="57988"/>
          <exon e_start="58874" e_stop="58986"/>
          <exon e_start="59094" e_stop="59391"/>
          <exon e_start="59659" e_stop="59758"/>
          <exon e_start="59848" e_stop="60114"/>
          <exon e_start="60608" e_stop="60685"/>
          <exon e_start="60788" e_stop="60892"/>
          <exon e_start="60999" e_stop="61048"/>
          <exon e_start="61143" e_stop="61242"/>
          <exon e_start="61359" e_stop="61457"/>
          <exon e_start="61540" e_stop="61653"/>
          <exon e_start="61758" e_stop="61917"/>
          <exon e_start="62707" e_stop="63095"/>
          <exon e_start="63206" e_stop="63280"/>
          <exon e_start="63622" e_stop="63889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGTGAGAGACAGAAAAAGATACTCTCTCCGCATCTATACATATAGAGAGGGAAAACCTATATTTATAGAGAGAGAAACTCTAGAGAGAGAAAAAGCCATGTATGTGTATATATAGGCTATATAGATTACAGTGAAAAAAACTTTCTTTTTCATTCCTCCATTATTCGTTCATTCTCTCAGCTCAAAGACCACAGAATTTTCAAGAAATTTATGACGTTTTGAAGTTAAAGTTTTGGTTTTTTTCCAGATTTTTCTCGGAATTTATGATTTCAGAGAAAAAAAATCAATGCAAAAGCTCCGTTTAATGGTCGATTTAGCTTGCGTTTTGTTAGGGTTCAGGTGAGTTTTTTTTTTTGTGGGATTTTGTTTATATGAGTTAAAAACTAGAAAGTTCTTATTTTTATTGTGTGTTTCGATTTTTTAGATGGTTTTTGTTATTAATTGGGATTAATTATGATGTGGGGTTGTGAGATCTGAGCTAAATTTACTGGCTTGAAACAGTTTGATTGAGTTTTTTTTCCATGTGATCAGCAATTTGCTGATTTTTGTATTTACCAACTTTTTTTTGAGACCTAAGTTTTTTGATGGATGGAAACTTAGCATTTCCGTGAATGCAGTTATCAGTTTAAGAAATGTTCATGATGGTCAATACAATTTGGGGTATGTGATATAGAAAATCTCAGCTAGTTTGTGATTTGAGGCATAGTTGATTGATTAGTTGGATATATGGGTGTAGAGTGTTTGACAATGCACACAGTGTGGGGTTGATTTCTCGGATGGTGGCTCAATTAAAAGTTATTAGCTCTGAAAGAAAATGTGTAAGCTTTTCTAGTGACCCCATGAGAAATTTGTGCATTTTGGATTTAGATCTGTGAAGGCAATTTAATTTATAGGGATAGAACTGGCAGGAAATGGATTTTCAGTTTCCCAGTTTTTATTTATTGGTTCCTGACAGCACTACTTCACTATAATGTGTATGCTGTTCTAGTCGTTGCGTGTTGCGCAAGCACTGACAATTGAAATCAGTGGACTTCTAGTAAATGAAATAGAGGACTCTCTCTGCATAGGAAGAATGAGTTTCAAATTTTTAGGAAGATACGTGTCACTTTCATCATTTAATGTTCTTCTTATCTTCCAGATATTAGTTAATGTGTCATCTTTTCATTTCTTTCTGCTGTGTTAAGTTGAGATTTTGACTGGAGTTGCTTTTTGTCCCATATTTAGTAGTGAAACTTGAGCTCGGATGGTTTTCCTGCGGAACAGCATAGATTGCTTTAAACGTTAAGAGCCACATTTCCTTCGTTATTCTTACATCCTCTTTGTTGGAAGGATGTCAGGTTTGTGCTTGCTATTTAATAATTGACTTTAGGAACTGTTATGGATGATTTAGTTTGTAATTTAAGAACTCATATACGCATATTCTGCGTGATATCTTGTATTCTAGAATGGTTGGATGCATATGATGACGTAAGAGAAAGAAGATCAGACTTCGAGGTTTCAGAGGATGAAAGACGACGTTCACGAATTGGTACTTTCAAGAAAAAGGCATTACATGCTTCAAACAAGTTCACCCACTCTCTGAAGAAAAGAGGAAAAAGGAAAGTGGACTACAGGTTCCCTTCAGTTTCAATAGAGGATGTACGTGATGCAAAAGAGGAGAATGCTGTCTGTGAATTGCGTCAAAGGCTGCTAGAGCGGAATTTGTTGCCATCCATACATGATGACTACCATACATTGTTGAGGTGCATTTTTTTTCTGAAAAATTATTCGGCTGATTTTTCATGTGTGAACCCCTAGGTAGCAATGACAGTTTTCATTGGAAATATGGATGAAGAAGCAGTATTATTTGATGAAGTTGCATCCTTAAACATATTTTGATTTTCCCTACCAATTTTCTTGAGGCTTTGCTTACAGTTGCATTGCTGTTTGTTTTCTGCACCTGCATACTGTGTCCTTATATCTTGTGGCCAGATGTTTAACCTAATTTTATTAACATTAATTTTGTGTAGATTCTTAAAGGCAAGAGATCTCAATGTTGAGAAAACTATTCCGATGTGGGAAGAAATGCTTAACTGGAGGAAAGAGTTTGGAGCAGACACAATATTGCAGGTATTTAATAGTTAATACTATTACATCAACATTCGTTTCACTATTGTTCTGTGTAATTTAGATTCTAATTGGAACTTGTGACCACTCAGGATTTTGACTTTGACGAGTTAGAAGAAGTATTGCAGTTTTACCCACAAGGATATCATGGGGTTGATAGGGAGGGAAGACCTGTTTATATCGAAAGGCTTGGACAAGCTAATCCGAACAAACTAATGCGGATAACCACAATTGATCGCTACATAAAATATCATGTCCAAGAATTTGAAAGGGCACTACATGAGAAGTTCCCTGCATGTTCTGTTGCTGCAAAGAAAAGAATCTGCACAACAACTACAATTTTGGATGTGCAAGGCTTAGTATGTTAATTCTATCAGTGGCTAATTTACTTAATTGATGATGTTTCTAACTTGTATATCTTTCTAATCTACATGGTCAGAATCATTTTGGACACTTAACTGCATTGACTAGAGACTTCTTTTTTCTATTACAAGGTCGTATTGACATGCATGAAACATCTGACTGGTATTACAAATAGCTAGCATGCCCATGGGTGGTTTTACTTGGGTCGAGATCAATTATTTTCATCATTTGCCCAACTTGATCATACACAAGAGTATCAGAATTTTTTCCTCCAAATTTTTTTTGTAGTGTCCTTATGTAGCAATGAAGATATCATGAGTATTTTCTTGCATTAATACAATTTTGTGCTCGCCGTTTCCGTTACTAATCATTCTCAATCAAGGAATTTTCCCTATGTCGAGCTTTTTTAGAGTTTTGTTCCTAATGTTTTATTAATACTATTTGTTATTATTCAAGTTCAACTTGTAATATGGTATGCTGTAAATGCAGGGGATTAAGAATTTCACAAGGACAGCTGCTAGTCTTTTGGCGGCCATGGCAAAAATTGATAATAGCTATTATCCTGAGGTATAGCTGTTAACTGTGAACATCTATAAATGAGACTCCAAATAGTTTGGTTAGACTCTATTGTCATGGAATACCTTTATAATGTCCAACATTTCTTTGTAGACACTGCATCGGATGTTCATTGTCAATGCTGGCCCTGGCTTCAAAAAGATGCTCTGGCCAGCAGCTCAAAAATTTCTGGATGCAAAGACTATTGCAAAGATACAGGTAGCAGAGGAATCATGTTTTTTTTGTTCGCTCAATTATGTTTTTTTTTGTTCGCTCTCTAACTACAATTGACTGAATCACTGTGTTTCAATCTTTACTTTTGTAGGTGCTCGATCCCAAATCCTTGGGTAAACTACATGAAGTTATTGACCCAAGGTTCATTATTTGTTTTGTTGTATGTTTTGCTTTGAAGAATTAGATCATTCAACCGTATATCTGATTATCTCTCTCTCTCTCTCTCTCTCAAAAGTCAATTGCCTGACTTTTTAGGTGGCTCTTGTACCTGTTCTGACGAGGGTGGTTGCCTCAGGTCTAACAAGGGTCCATGGAGTGATCCTGAAGTAATGAAGGTGAGCATGCCAGTTCAGTTGTATTATTCTATGACATATTCTTCATCTTGGTAAGCTTTATCTAGTCCTGGAGGTGTGAACTAGTTTGTAATAACCTGTTATTTTCTCCTCTTTAGCTTGTCTATAATGTAGAGGCAACAACTGTGAAGGAAATCTCTAGAAAACTTGGTGACCAAAGGAAAATTGAATCCTATATACAAATACGCCCTTCAAAGGTAAATTTTTTCACTTTGGCATGCTCCTTTTTTTCTTTTTCAGTTGTCTTCCTATGTATGACACAATTTATTATGTGTTCAGGGAAGGAGCAGAGACACATCCACAAGTGATTCAGTATCGGATGCTGCTGACTTGTGTTCACCAATTAGAGGAAATAGTAGCTCAATTTTGAGGCTGACCCCAGTAGATGAAGAAGTGAGTTTTGCAAAGCATAATGTACTTCTGTAGTTGCAGTGCACATGTGCACTTGCGCTTCTTTATATATCACACTTTTTGACTTATAGACATTGGTTTCGTAGGCTAGGTCATCAGATTCAACAGCCTATTGTAGCTGTGATGATGAATTCAGCCTGGGTGATCGAGGTGTCACTAATGAGCATGGATTGCTGCATTGGCAAGAGCAGTCTCCTGTGAGCAGTCCAATGAATCGGTCCACTAATACATTGCCTCATTCTGGAGGTATTTGTCTTGTTTATCATGAATTCCATCAAAAGAACCTTTAATTGATAGCTACCTTCACTAATCACTAGTGTGTTGTAAGACGTGGATTGGTTTATAGAGACACCATGAGAATTCAAAGTTACCAGTTTCAAAAAAGAAAATGACACCATGAGAATTATAAAACTCTATTAGTTGAATCAATTCTCAGTTCCATGATATAGGCACAGACAAGTTTTCTTCTGGAGTGTAACTCCACTCCTGTAGAAATCATAGGGGACTAATTAGTGTCTGAAGTTATAATAAACTTGAGAGGAAGTTATGCTGCCACACTACACTTCTCCACCCTCCAAGGAAAAGAAACCTTAAAAGAAAGAATGACTCTTTATGTGTATGAATTTCAGAAGCGGGATTTCTCTTGTCTCAAAACCTTTTCCTTTTAGCATGTGAAAGGAATGTGGGAGATGAAAAACTTCTTGTTTTAAGTCTTATTTGCCTTGCTAAAAGTCCCCTTTGGCTGGTAGGTGTGCTCACCTGGTTTGTTTTTGGCCTTTGTATATCCACCGTATTTTTTCCCTTATTGAAGACTTCACAAAATCTATACTCTATCCATCATCTATACTCTATCCATCTCCTGGTACTCATTTTCATCATTTGTGTACTTACTCTGCAATGATGTGCTTCGCCATGTATATCTATGTAGTCTAGTCAATTGAACTCTGAGTTCTTCTCAGCTAAAACTCATGCTAGAATGGTAATTGTAAATTCATATATCGTGGGGTTCATGTCCATTATTCATGTTCTTTTTAGGTACCTGGGCAATAAATTGGTGTGAAAGAATCCAAGAGAAGATTCTGAGCAGCTGTTTCAGTTGTTTGGAAAGGAAACTGATTCCTTTCATACTTAAACTCTTTGCATTTATTCGTAGTCTTCCCTTCGAGTACTGGAGGAAACGGACAAATGTTTTTCCGACTAATGCATTGGAAGAACGACAAGGGAGCAGTTCATCCATTAATGATGAAGCAGTTCAAAGAGTAAGGGAGATCCATCCATGCATGCAGCGTCTTCATAAATTGGAAAATTTATTGGAAGAAATAAACAAAAAGCCCGCTGAGATCCCAGCAGAGAAGGATCGAATGCTTCATCAGTCACTTAACAGGATCAAGTCTGTAGAAGTTGACCTAGAAAAAACAAAAAGGGTAAGGCTCATCAGTGAGGCAGGTCAAAAAAGTTTCACATAAAATATTTCCTTATAAAAGAATGTCTGTAAGTAGCAGTGTTCTCTTATTATGTTTTATATGTTCAACAGGTATTGCATGCGACGGTATTGAAGCAACTTGAAATTACAGAGTTATTGGACAACCTAAAAGAGTCGAGCTTTCATGTAAGCATCACATAACAATATGAACATATAGTTGGTCATCATTATCTTGTCAGCTCTACAGTCAATCAGTATATATGTGCTTAGCTGATTTATTGTCCTGTCATCTGATACTGTTTGCATTTATCTTGATATAGTTTGTGTTTATCTGTCTGCTGTTTTATTTTATTTTATAATTGTTCCCATGTTTGGCAAAAAGGCTAGGGGGTTGTTGTCATGTGATCAATTGGAAAACTAAAATGAAGGCAATTCCTTATGTTGGCTTCATTGTCTATTACTGAAAGTATAGTTTCAATTAATCCTTTGCGAATACAAGTCTGAGATCTGCTGATGTTTTGTTGCAGAGGCGGAGATTGTGGTGTTGAATATTGTAAGGTTGGAGATTTGAGTACCAGGACAACGCGATGATAACCTTTTACTGCTAACTATGCTGCGAAGGGAGATGTTAGCTTATGCACCTCCAGCAGTGGTGACAAAGTTTTCCTTTTTTTTTTTTTTGTACAATGTCCTTTACAGAACATGCAGTTGTTACTGCAAGATGATGTTTGATTATACTGTACTGTTAAACATCTTGAAGAAAAGCTTAAAAGAAAGCCCTTTGAGGGTTTAGAG</genome_strand>
        <mrna_strand>GTTGAGTGAGAGACAGAAAAAGATACTCTCTCCGCATCTATACATATAGAGAGGGAAAACCTATATTTATAGAGAGAGAAACTCTAGAGAGAGAAAAAGCCATGTATGTGTATATATAGGCTATATAGATTACAGTGAAAAAAACTTTCTTTTTCATTCCTCCATTATTCGTTCATTCTCTCAGCTCAAAGACCACAGAATTTTCAAGAAATTTATGACGTTTTGAAGTTAAAGTTTTGGTTTTTTTCCAGATTTTTCTCGGAATTTATGATTTCAGAGAAAAAAAATCAATGCAAAAGCTCCGTTTAATGGTCGATTTAGCTTGCGTTTTGTTAGGGTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGAAACTTGAGCTCGGATGGTTTTCCTGCGGAACAGCATAGATTGCTTTAAACGTTAAGAGCCACATTTCCTTCGTTATTCTTACATCCTCTTTGTTGGAAGGATGTCAG...........................................................................................................AATGGTTGGATGCATATGATGACGTAAGAGAAAGAAGATCAGACTTCGAGGTTTCAGAGGATGAAAGACGACGTTCACGAATTGGTACTTTCAAGAAAAAGGCATTACATGCTTCAAACAAGTTCACCCACTCTCTGAAGAAAAGAGGAAAAAGGAAAGTGGACTACAGGTTCCCTTCAGTTTCAATAGAGGATGTACGTGATGCAAAAGAGGAGAATGCTGTCTGTGAATTGCGTCAAAGGCTGCTAGAGCGGAATTTGTTGCCATCCATACATGATGACTACCATACATTGTTGAG...........................................................................................................................................................................................................................................................................ATTCTTAAAGGCAAGAGATCTCAATGTTGAGAAAACTATTCCGATGTGGGAAGAAATGCTTAACTGGAGGAAAGAGTTTGGAGCAGACACAATATTGCAG.........................................................................................GATTTTGACTTTGACGAGTTAGAAGAAGTATTGCAGTTTTACCCACAAGGATATCATGGGGTTGATAGGGAGGGAAGACCTGTTTATATCGAAAGGCTTGGACAAGCTAATCCGAACAAACTAATGCGGATAACCACAATTGATCGCTACATAAAATATCATGTCCAAGAATTTGAAAGGGCACTACATGAGAAGTTCCCTGCATGTTCTGTTGCTGCAAAGAAAAGAATCTGCACAACAACTACAATTTTGGATGTGCAAGGCTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTAAGAATTTCACAAGGACAGCTGCTAGTCTTTTGGCGGCCATGGCAAAAATTGATAATAGCTATTATCCTGAG......................................................................................................ACACTGCATCGGATGTTCATTGTC-ATGCTGGCCCTGGCTTCAAAAAGATGCTCTGGCCAGCAGCTCAAAAATTTCTGGATGCAAAGACTATTGCAAAGATACAG..........................................................................................................GTGCTCGATCCCAAATCCTTGGGTAAACTACATGAAGTTATTGACCCAAG..............................................................................................TCAATTGCCTGACTTTTTAGGTGGCTCTTGTACCTGTTCTGACGAGGGTGGTTGCCTCAGGTCTAACAAGGGTCCATGGAGTGATCCTGAAGTAATGAAG....................................................................................................................CTTGTCTATAATGTAGAGGCAACAACTGTGAAGGAAATCTCTAGAAAACTTGGTGACCAAAGGAAAATTGAATCCTATATACAAATACGCCCTTCAAAG..................................................................................GGAAGGAGCAGAGACACATCCACAAGTGATTCAGTATCGGATGCTGCTGACTTGTGTTCACCAATTAGAGGAAATAGTAGCTCAATTTTGAGGCTGACCCCAGTAGATGAAGAA........................................................................................................GCTAGGTCATCAGATTCAACAGCCTATTGTAGCTGTGATGATGAATTCAGCCTGGGTGATCGAGGTGTCACTAATGAGCATGGATTGCTGCATTGGCAAGAGCAGTCTCCTGTGAGCAGTCCAATGAATCGGTCCACTAATACATTGCCTCATTCTGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGGGCAATAAATTGGTGTGAAAGAATCCAAGAGAAGATTCTGAGCAGCTGTTTCAGTTGTTTGGAAAGGAAACTGATTCCTTTCATACTTAAACTCTTTGCATTTATTCGTAGTCTTCCCTTCGAGTACTGGAGGAAACGGACAAATGTTTTTCCGACTAATGCATTGGAAGAACGACAAGGGAGCAGTTCATCCATTAATGATGAAGCAGTTCAAAGAGTAAGGGAGATCCATCCATGCATGCAGCGTCTTCATAAATTGGAAAATTTATTGGAAGAAATAAACAAAAAGCCCGCTGAGATCCCAGCAGAGAAGGATCGAATGCTTCATCAGTCACTTAACAGGATCAAGTCTGTAGAAGTTGACCTAGAAAAAACAAAAAGG..............................................................................................................GTATTGCATGCGACGGTATTGAAGCAACTTGAAATTACAGAGTTATTGGACAACCTAAAAGAGTCGAGCTTTCAT.....................................................................................................................................................................................................................................................................................................................................................AGGCGGAGATTGTGGTGTTGAATATTGTAAGGTTGGAGATTTGAGTACCAGGACAACGCGATGATAACCTTTTACTGCTAAATATGCTGCGAAGGGAGATGTTAGCTTATGCACCTCCAGCAGTGGTGACAAAGTTTTCC-TTTTTTTTTTTTTGTACAATGTCCTTTACAGAACATGCAGTTGTTACTGCAAGATGATGTTTGATTATACTGTACTGTTAAACATCTTGAAGAAAAGTTTAAAAGAAAGCCCTTTGAGGGAATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317637" ref_strand="+" ref_description="SGN-U317637        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains similarity to GPI-anchored protein | chr5:22753195-22754512 FORWARD | Aliases: MDA7.23, MDA7_23(evalue: 2e-39, score=159) genbank/nr: gi|51964324|ref|XP_506947.1| PREDICTED P0654B04.18 gene product [Oryza sativa (japonica cultivar-group)] >gi|50912235|ref|XP_467525.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|45735979|dbj|BAD13008.1| unknown protein [Oryza sativa (japonica cultivar-group)] (evalue: 4e-38, score=161)">
      <seq>gtcatgacaatttacgcgtagaacggcgctagctgtagatgctgtacccactccatttattttttctttcttattatatgcttttaataattttatgtcgttattaaactcaaaatattttctattttctatttccaatatgaactcaaacttactgtaaacaattagctggcaagaacagagataacctttgttcaaagggaaagagaacagatagatctctttctatttctgtttttttctcaaagatcactttttttctggttctttgttgaaatcttcttccaagaactcatcttttagcttttatattctgatattttagctcattttgctataatggggtgcagatattgtttttcttgtatttttctactgttttctttcttcatttcagcttcagcttcagcttatttatcagatgggatttttgttaatgaaggtttaactgggaggaatctacttcaagccaagaaaccttgtcctatcagcttcgagtttcaaaactacacagtggtcactacccaatgcaaaggaccaaaatacccagccaaacaatgttgtgaagcccttgcggagtttgcgtgtccctattcagaattcgtgaatgatttgacaactgattgtgcctctaccatgttcagctacattaaccttcacgggaagtacccacctggtcttttcgccagtgagtgcaataaagacaaaaatgggctaccatgtcctgattctgcatcatccgaatctgccagtgctaataatagtcatatgagctgtagactatcaccgatcctgatgattgcaacagctcttacgggcttcttcttgttgcttctctgaagatctcttcaaggttttggcgtagtttctgtattctttattgtcaaatattgtttgaactccggattttcttctaccatgttaccactgattaacgatcaacaagaaactcctcctcttgtaattcttgatatattacaacagcaaactgttgatacttgtgtattgaaaatgactctccttgctaaaccaaggatctgttaaatattatttcactttgttgtattttgagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="+" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="64457" stop="67842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64757" g_stop="65177" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65178" i_stop="65262" i_length="85">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65263" g_stop="65319" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="478" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65320" i_stop="66937" i_length="1618">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66938" g_stop="67545" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="1086" r_length="608" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="+" ref_id="SGN-U317637" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1086</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64757" e_stop="65177"/>
          <exon e_start="65263" e_stop="65319"/>
          <exon e_start="66938" e_stop="67545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATGACAATTTACGCGTAGAACGGCGCTAGCTGTAGATGCTGTACCCACTCCATTTATTTTTTCTTTCTTATTATATGCTTTTAATAATTTTATGTCGTTATTAAACTCAAAATATTTTCTATTTTCTATTTCCAATATGAACTCAAACTTACTGTAAACAATTAGCTGGCAAGAACAGAGATAACCTTTGTTCAAAGGGAAAGAGAACAGATAGATCTCTTTCTATTTCTGTTTTTTTCTCAAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAGGTTTGTGTTTTTTGTACTGTTTTTGTTTTTCCCAATTTGGTTTCTGCTATGAATGTTCTTACATATTTTATATTTTGTTATGCAGATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAACGTAAGCTCTTGATCATCATTTTTGGTTTTGTTTGGTGGTCTTTGGAGCTAGATTTGTGTATTTTGTTAAGTTCTACTGTAGCTGAATGGTTTGACTAAAGATCTGTGAAGTGGGGTTTGTTCTTTAGGTATATATCTTGTTGAAATTGAAACTAAATTTCTGAAATAGCTGTTGGGTGATCTTGTAATTCAGCCTCTTTTCTTCTGTTTCTGTTTTCTGGGATCTGGATGTGTCATTTTGCCTTACGTTTGAGGTGAGGTGAGAGGAACCCTTTTGCAGTTGAAGATGGCGCTTTTTTGGTTTATCTTTATGCATTATCATTGTTCTTGTTTTTCATTATTTTTCGATTTCTGTTGTTACATGTTGTTCCTTTAGCCTCGATTATCTTATTCTCTTGATGTTGTTTCTACTGCCTCTTTTTTTATCATTCATTGAGTCTGAGGGTGTAGCCGGAAACAGCCTCTCTACCTTTCTCAAGTTAGGGGTAGAGGTAAGGTTTGTGTACGCTCTATCCTCACAAACCAACCTCGCTTGTGGGATTACAGTGAATTATTTGTTGCTGTTTTCTTTGCTATTATGTCTTGGTTATGTTCTTACAGTCAGGTTATGTTTTAACATGCTTGAGTGTCTTTCTAATAAGGAAGAAGTTTTTAAGAAACATGCACTAGTTGTGTTATCCTGTAATTATGGTTAGTAGGTTATTGCAAATACAAGGACAAAACCAAACTTTTTTAGGATTATGAAATGTTTAAATTGAGCAACTTGTGACATTTCCATATAATTTTGTAGTTGATAGCATGTGATAGTTTTGCCAAGTGATTTTTAGTGCTCTGTGCAAAGTTCAGTAAGCAGTACGATGTGCTGCAATCTGCTGCGTATTTCGCATTCTGAAGTTCTGCATAGATTTGGTAGAGATGTTTCTTCCAGTTTGTTTTGTTGATACTGTGGCCAGGAGTGTCTGTTTGATGATACTCAGCTACGTACGAAGCTATAGGATAGTGCTTGATATGAATGATAACTTTGTTTTCTGGGCCGTGGATCTTCTTGTATGCTTTGTTCATCCACTGATGGAAAATGGAAAGGAATGGTATAAATGTGAAGTACATTATCGAGTTTTGCAGCTTAGGTGGGTATTTAACTACTGTGTGATTGAATTGGTATCTAGGACTACCTATTATATGAGTTGAAATATGCAAACAGAGCTCGTTGATGAGGATAATGTTTAAGATGGTACTGGATATTTTTAAACTTGAGATGAGTCAAATCAAGGAAAACACGAAAGACCATAGTTCATCAAGTTCTGCTTATTCTCAGAATTCATATGTTGCCACATGTGTGGTGACTTAAAGCAATTTAATCTTCTTTTCCTCCATCAAGCAATTTGAAAACATTGATGTACCTAAAACAGGGAAGTTTTCGTTAATTAGGGGAATTTGACACCGAGTTGCTTGATGACTTGTTTATTTGCTATTGTGAGATGCACATAGTTGTTGCATGTTTGTAACTCACTGATGATGATCACTTTACAATGACCTAGAAGATTTCTGTTTGCTTAAATTTTTTACCCTGAGAGCTTGAAATGCTTGCTGAAGAATGCTTTGCTTCAATATTTATGCAGCTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACAGCAAACTGTTGATACTTGTGTATTGAAAATGACTCTCCTTGCTAAACCAAGGATCTGTTAAATATTATTTCACTTTGTTGTATTTTGAGCATGAACGATAGTA</genome_strand>
        <mrna_strand>GTCATGACAATTTACGCGTAGAACGGCGCTAGCTGTAGATGCTGTACCCACTCCATTTATTTTTTCTTTCTTATTATATGCTTTTAATAATTTTATGTCGTTATTAAACTCAAAATATTTTCTATTTTCTATTTCCAATATGAACTCAAACTTACTGTAAACAATTAGCTGGCAAGAACAGAGATAACCTTTGTTCAAAGGGAAAGAGAACAGATAGATCTCTTTCTATTTCTGTTTTTTTCTCAAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAG.....................................................................................ATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACAGCAAACTGTTGATACTTGTGTATTGAAAATGACTCTCCTTGCTAAACCAAGGATCTGTTAAATATTATTTCACTTTGTTGTATTTTGAGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317303" ref_strand="+" ref_description="SGN-U317303        Tomato 200607 #1 [21 ESTs aligned] arabidopsis/peptide: | Symbol: None | actin-related protein, putative (ARP8), strong similarity to actin-related protein 8A (ARP8) (Arabidopsis thaliana) GI:21427473; contains Pfam profile PF00022: Actin; supporting cDNA gi:21427470:gb:AF507916.1: | chr5:22754551-22758242 REVERSE | Aliases: MDA7.26, AT5G56185(evalue: 0, score=634) genbank/nr: gi|30696705|ref|NP_568836.2| actin-related protein 8B (ARP8) protein [Arabidopsis thaliana] gi|9758638|dbj|BAB09300.1| contains similarity to actin~gene_id:MDA7.24 [Arabidopsis thaliana] gi|21427471|gb|AAM53248.1| actin-related protein 8B [Arabidopsis thaliana] gi|21489926|tpg|DAA00031.1| TPA: actin-related protein 8B; AtARP8B [Arabidopsis thaliana](evalue: 6e-180, score=634)">
      <seq>atcggccgaattggttgctcaaatcagtgtgtgtttgcaaacacgagtttcagtttcatgaagaatgagtgactattcagctaaaaactgttagaccctctcccatttcatgactggagccgtgccacaacaaccatggctatgttgttgcgcaaggtatgggaatccgtatctactcgttccacttcgagcaattccacctcaacttcgatctcgactgtcaattccatggatcggttcgaccagatgatgatgtatatacagacggcgtccaccggagaatttgatcggattccgttagatattttcattcaaattttgaagattttagggccaaaagagtctgctaagctgacttctgtatgtaaatcctggaaatacattgtttccgataatcgcctatggatttactttcttcagaatcaccatgagccttgggattctacttttttctctgaaactcacttgagatctggacctcttaggacgtttccaaattcagtaccagaattgtcattcatgagtatttatggtcaacgtgctcaagtgcccggtgctattattattgatggtgggtctggctattgcaaatttggttggagtaagtatagtgctccgtcagggagatcagcgacatttttggagtttggcaacattgaatctccaatgtattctagattgagacacttcttttcaacgatatacaccaggatgcaggtgaaaacttcaacacagccgatcattgtgtccattccgatttgccattatgatgatactgaatctgataaagcagctagaacgcagttaaaagacgcgatccattctgcattatttgacatgaatgttcctgctgtttgtgctgtcaaccaggctgttttagctttatttgctgcaaggaaagtttcaggaatagtagtcaacattgggtttaaccagacatctattgttccaattctctacggtaaagtcatgcaccaagtaggtgtggaagttgtgggaattggagcattgaagcttacaggattccttaaggagcagatgcaacagaagaatatttattttgggtcactttacactgtgcggactctgaaagagaacctttgttatattgcacttgattatgaagctgaactatccaaagataccaacgcatcttttcagatcgggtctgaaggttgctttacactttcagaagagcgctttaaaacaggagagattttgttccagcctcgcattgcaggagtgcgtgctatgggtttacagaatgctgtggcgctgtgcatggagcactgccatgacgctgaattaatggttgatgatagctggtacaaaacagtagttttggctgggggaagtgcatgtttgcctggattagcagaaagattagagaaggaagtgtgtgaacttcttcctccatgcatgagtaatggaatcagagtacttcctcccccatatggcgtagattctgcttggtatggggctaagctgattggcaatttgagcaccttccccagttcctggtgtgtgatgaaaaagcaatttcgtcataggtcgagacgcaagtttatgtggtgattactgttgcagtggcactgcaggtggtattgccaaagatcaagagttttgatgtgcctcgtggctgaagatcaactattgcatcaatgattagatcatttgttaaagatataaatataaggctatttatacatcaagtgtaagactaatttatgtcgttcagtcatgcggatctgctaagcatatgatgtacaaaatcttagattattgaggtagttccaaatggagtgaatatctgtaagttggacttctagacttataataaaggagcacctttttcaggttatgtgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="-" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="76388" stop="69519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76082" g_stop="75611" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="485" r_length="472" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75610" i_stop="75439" i_length="172">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75438" g_stop="75353" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="571" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75352" i_stop="75182" i_length="171">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75181" g_stop="75111" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="642" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75110" i_stop="74949" i_length="162">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74948" g_stop="74881" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="710" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74880" i_stop="74321" i_length="560">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74320" g_stop="74259" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="772" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74258" i_stop="73932" i_length="327">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73931" g_stop="73834" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="870" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73833" i_stop="72998" i_length="836">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="72997" g_stop="72916" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="952" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="72915" i_stop="72459" i_length="457">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="72458" g_stop="72316" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="953" r_stop="1095" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="72315" i_stop="71618" i_length="698">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="71617" g_stop="71469" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1096" r_stop="1244" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="71468" i_stop="71029" i_length="440">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="71028" g_stop="70895" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1245" r_stop="1378" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="70894" i_stop="70722" i_length="173">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="70721" g_stop="70603" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1379" r_stop="1497" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="70602" i_stop="70196" i_length="407">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="70195" g_stop="69819" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1498" r_stop="1874" r_length="377" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1875" polyA_stop="1885"/>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="-" ref_id="SGN-U317303" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1861</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76082" e_stop="75611"/>
          <exon e_start="75438" e_stop="75353"/>
          <exon e_start="75181" e_stop="75111"/>
          <exon e_start="74948" e_stop="74881"/>
          <exon e_start="74320" e_stop="74259"/>
          <exon e_start="73931" e_stop="73834"/>
          <exon e_start="72997" e_stop="72916"/>
          <exon e_start="72458" e_stop="72316"/>
          <exon e_start="71617" e_stop="71469"/>
          <exon e_start="71028" e_stop="70895"/>
          <exon e_start="70721" e_stop="70603"/>
          <exon e_start="70195" e_stop="69819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTCAAATCAGTGTGTGTTTGCAAACACGAGTTTCAGTTTCATGAAGAATGAGTGACTATTCAGCTAAAAACTGTTAGACCCTCTCCCATTTCATGACTGGAGCCGTGCCACAACAACCATGGCTATGTTGTTGCGCAAGGTATGGGAATCCGTATCTACTCGTTCCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAGGTAAATTCCTTTTTACAGTTCTGCTTTTTGAATGTCAAATTAGGTGAACTTTCCAATTGGTTTAATGTAATTTAGCTGAACTAATTTGGGACGGAGGGAGTAGTAGATGAAAGAGTGAAGTATAGATGAGGATATCATGAGTAGCTGGTTTGATAAGGTGTATGATTTGTAGGACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGATGGTGCGTGCCTTTCTATGTGTTACACTCGATCTTTTAGTTGGCATACTGCTCTAGTTGTTTTTTTTAACTGATTCGAGGATAAATTCTAATGAAACAGAGTATTATGTGAACAGTACAAAGAGAAATGATTTCTTTGAGCTTATTTATCTTTCTGATTTTTCTCACTAAAAGGTGGGTCTGGCTATTGCAAATTTGGTTGGAGTAAGTATAGTGCTCCGTCAGGGAGATCAGCGACATTTTTGGTGAGCTTTCTTATGAGTTAACAGTTGTAGTTGTTAATTTGTGAAAATCACTTGCATTTTTGACTATTTGAGGCTTTTTTTGTTGTTTTAACTACTTGTATTGTTCCATGTGCTCGGCAAATTCTCACCCTAATCCTTCCTGAAAAATTGTACCATTGACAGGAGTTTGGCAACATTGAATCTCCAATGTATTCTAGATTGAGACACTTCTTTTCAACGATATACACCAGGTTTGTGTTCCGTTCATTTTTGGTGTCATTTTACATTGGTCCCATATGACAACATCCACCTAAACCAACATCCATTGTTGAGCAATCTAAACAGGTTTTTGGTTCTCAAACATAATTTGATTTTCATAAAATGCTTTTTAACACCATATAACAGGCCTCTACGATATTTTTTACATTATTAATTGATTGTAATACGGACATTTGGTTGGCAAAGAAGAATCTGCATCAAAGTTTTATCTATGAAAGGACTCTCTGTATCATTATGTTGTCAATGTGGCACATATCCTGATTGTTTATCATATAATTCACTAATAAGATTTCCTCTATTCATATAATAAATCACCAGTTTTACCCACTTAAGAGAGCAAAAGGTATAAAGGGCTGGAATCACAATGACTTCCAGAATTTGACTAAAACACCTCGCATCTTTTTTAGAGTACTACCGTATAGCTCCCTACAAACCAGAACTAGAAGATAAGATATGAGCTTGTTCCTTAGACCCAAGGTTGCTGGAATCCTTTTATAAATTTCTCTCTTCTGCTGTTATGGATTCTTTGCAGGATGCAGGTGAAAACTTCAACACAGCCGATCATTGTGTCCATTCCGATTTGCCATTATGATGGTCAGTTTCTATTTGGGCGTTGCTGAAAATCCAGTCAAATTTCTGTAAATATAACGTATCAACGACTCAATTTGTTGTTTAGAGGGCAAATATTATTTCACAATATATGCATGTGTCCATTTTTACTTGATGAATCAGCTCATGCAACTCTATTTTTGAACATTCTTCCATTTGACTTTTGAGCAAGAGGGTAAGGTGCTAAAAGGTTTGAATAGTTATCTCACTCAATTAAATCTTCAACTACTAAGAAGTGAGCATAGTAAGATCTTTTCAGTGCACCAAACCAAGGCCTTCCTTTTTCTTTCTAACTTCTCTTTACCTATACAGATACTGAATCTGATAAAGCAGCTAGAACGCAGTTAAAAGACGCGATCCATTCTGCATTATTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGTAGTACTTATTCATTTCCTTCAACTTATGTTGGATTCCCGGAGGTGATTAAAGTTGTTAGTTTTGATAATCTTGGTTGTTCTTTTAAAAGTTCTAAGCTCGTAGCAAAACTTTGTTAGATAACAATCTTGGTTGTACTCTTAGAAGTTCTAAGCTCATAGAAGAACTTTGTTAGATTGAGGAAGAAAAAACATTTATGTCATTGTTGAGCGACATTTATGAACATGTTACATATAAAGCAGAATCTGTCCTTTCATAAGCTAGTGTACATCTACAGATAAGCTTTTCTTTCACAGTTATCGTGTGCCTTTCCTTAGTCAGGCATTCACTTGCTTGTTGTTGTGGCATGTCCTGGTCCTTAGGTTTATTGGATTTTATCTTCTTGCCTTAGCATTGGGCCACTTAGGGCTGCTACCACCAATTTAATACATACCCATGTACCCTCATCCTAATATATTTGACTTCTTTTGTTAATTACAGTAGTTTTCCATCCCTGAAAATGTTAATTAACATAAAATAACAGTACATATTTCTCTTATTTAATGGTCATGGACTGTTTTCAGTCAAATAGCCCCACTTCTCACTTTCCACTAATAATATCTTAAACATATTTGACTAACTAATGAAGTACTTGATGCTTTATACTGTTAATGGCAAAAACTAAACATTAATAACATGGGGAGAGAAAATGATCAAAATGTCACTAACTTGGCAAACTTTTCCTGTTCTCTTTCTAAGATTGTATTATACATTACCACGATTCTTCCAAAGTTTTAGACATAATCTGATTTTGGATTTATAATAGTATTATGATGTCTTTCTTTCAAAAACTATAGGCTGTTTTAGCTTTATTTGCTGCAAGGAAAGTTTCAGGAATAGTAGTCAACATTGGGTTTAACCAGACATCTATTGTTCCAAGTAAGTTTTTTATTCATGTACTGGACTTATGGTTCTTGTTTGACTTTATTGTATACTTGTTTTTGTAGAACTCATTCATTTTTAATTCTTTGAACTGTGAAAGTTTTTTTTTTGTTTTTTGAGTTGCTAGTAGGATATTTAGAAACTGAGTTTGTATTCTCCAGCTTTCTGAGTTAATCAGCGGTGACCAGACAACCCCTGAGATGAATCACAGATGGGTTCCAATGTTTCTTGTTAAACTAATTTCATCTTACATTTGCTTTACTCCTTTTAAATTACCTTATCAAAAAGAAAGTTTGTGCTCTCTAATTGTTTATTCTTTCTGATGATTTAATTTACTCTTAAATTTCTTCATGAACAACGTACATGGATTGCATGTTTTTATTTCTCTTCGTGTCTGCAATTTGATTGCATTGTTTCAATAATTTATGTGTAGCCACTTTTTGGTCTTTTACAGTTCTCTACGGTAAAGTCATGCACCAAGTAGGTGTGGAAGTTGTGGGAATTGGAGCATTGAAGCTTACAGGATTCCTTAAGGAGCAGATGCAACAGAAGAATATTTATTTTGGGTCACTTTACACTGTGCGGACTCTGAAAGAGGTATCAACTTTCTGTCATAGAACATTTAGGGTGGGAAGGAAGCGGGTTTCACTTAGACATGATTCTTTGCACTATTTCTACCTTGCAAGTGAAAAGTTACTGAATCACTTCAAAAATATGCCGTGGTAACATTTTTGTTACTGGAAACCATTTCGTTGTACATAAAATTTTGAATTGCCGCGTCCCTCTACTGCCACATCTAGATACTAACAATCTTGAGAAGTGCTTGGTCAGATAATCATAGCTCCAGCACTACTGCATATGCACTAGCTGCTGATAACCTCAATAAACCATTAAATGCATATCTTAGTTGTGTGAGTTCTTTGTGACTTTCTTCTTGACTACACATTGTCGAATTACAATAATCTGTAAAGTTTGCAAAGTAATTTAAGTTCTAAGTTTTCCAGAAATTTATGGTATCTGAAGAGGAAAATGTGATGAACAAATTTAAGAGTTATTGCAGATCTTCTGCTTCACTTTTTCACTATATTTTGTTTATTTAAAAATAAAGATGTTATTAGTGTACAATTTCTCTGTTATTTTTATCTTAGTAACATAAATCATGTTAGATTCAGTTAGTTTTGATCCTGTGACAAACATAGACTTGAAAAGCCTAGCTGCATGAGAGTTACGGTTACTTTTAATTTCTTAGTGATGTTTTCGAGTATTTTCTGAGGTCCATTTGGTCCGTATTGCAGAACCTTTGTTATATTGCACTTGATTATGAAGCTGAACTATCCAAAGATACCAACGCATCTTTTCAGATCGGGTCTGAAGGTTGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGTGTACGTTCATATTACCTTATTTGGACTTTTAGTAAGACTATTGAACAACTCCAGTTTCAATTACTTCCCTTAGGGCATAAAGGCCTTTTAAAAAACTGGAGTAGATCCTGCACATGACAAAGTGAATTTGGACTATGTAGTCAATTGGAACCTTGTTGCATCAGGTCTTTCCTGAAACTTATTTTCTTAAATGCGAATGGAGAGACAGATTTGTACTCAGGGCGGGTGGGGGCAGTTCTAGACATCGTATTCTCATTTTGAGTCTACACTCTACTATGGTCAACTGATGATGCCGGTTTCTTGACTTATATCATTTAGACAAAGTGGTGTTTTTGTGGATGCAACTGGTGAAACACAACTGACCCCCACCCCCCAATTACCTCAAAAAAGAACAAGGATCTGTAGTATGGAAAATTAGTAGATTTGCGGTCTTGTTTCAGGCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAGGTGAATTGCAACTGATGCTCTTTTTCCCTAGATAATGTATCTGATGGAATCATGTGTTTGTACATGTTCTTCTAATTTAGGAAAGTAAAGATGAGAAAGTGTTAATAGACGAAATAAAGAAGAAATGCTATCTTCAAGGGAAGTACTGATTTTTTTTATTATGAACATTGCAGAAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAATGTAAGCTACCTTGCTCAACATAATTTGTTGCAGTAGTTTTACTCTCTTACTCATGCTTATTGGCAATCTTGACTTTGACATGGTTCCTTGAATTGAAAACTTAGTTAATTCCGGTAAAAATCGTATATTAAATTTGCATTTTAAAAGGTAAGAGTTACTCTACCTGCTTAGGTGAACATGCCAATTCTTTCGATTGCCTCTTGGTTAGTTGTTTTTTTGTTCTTAAGAAGTTCTGTATGATTTGACTATGATCTCTTCTTTTGAGGGGATTGGTGTGGAAAAAATGTGTAATTATCATCAAAGTGACAATTAGCATGTACTTGATCATGAATATTTTGTTCTTGCTGTCATTGAACTTTTTATCATATACCTGATTATGATACAAATTCTTTGTCTGTTTACTACAGTTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATGTCGTTCAGTCATGCGGATCTGCTAAGCATATGATGTACAAAATCTTAGATTATTGAGGTAGTTCCAAATGGAGTGAATATCTGTAAGTTGGACTTCTAGACTTATAATAAAGGAGCACCTTTTTCAGGTTATGTGTTAATACAA</genome_strand>
        <mrna_strand>GTTGCTCAAATCAGTGTGTGTTTGCAAACACGAGTTTCAGTTTCATGAAGAATGAGTGACTATTCAGCTAAAAACTGTTAGACCCTCTCCCATTTCATGACTGGAGCCGTGCCACAACAACCATGGCTATGTTGTTGCGCAAGGTATGGGAATCCGTATCTACTCGTTCCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAG............................................................................................................................................................................GACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGATG...........................................................................................................................................................................GTGGGTCTGGCTATTGCAAATTTGGTTGGAGTAAGTATAGTGCTCCGTCAGGGAGATCAGCGACATTTTTG..................................................................................................................................................................GAGTTTGGCAACATTGAATCTCCAATGTATTCTAGATTGAGACACTTCTTTTCAACGATATACACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAGGTGAAAACTTCAACACAGCCGATCATTGTGTCCATTCCGATTTGCCATTATGATG.......................................................................................................................................................................................................................................................................................................................................ATACTGAATCTGATAAAGCAGCTAGAACGCAGTTAAAAGACGCGATCCATTCTGCATTATTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTTTAGCTTTATTTGCTGCAAGGAAAGTTTCAGGAATAGTAGTCAACATTGGGTTTAACCAGACATCTATTGTTCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTACGGTAAAGTCATGCACCAAGTAGGTGTGGAAGTTGTGGGAATTGGAGCATTGAAGCTTACAGGATTCCTTAAGGAGCAGATGCAACAGAAGAATATTTATTTTGGGTCACTTTACACTGTGCGGACTCTGAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTTTGTTATATTGCACTTGATTATGAAGCTGAACTATCCAAAGATACCAACGCATCTTTTCAGATCGGGTCTGAAGGTTGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAG.............................................................................................................................................................................AAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATGTCGTTCAGTCATGCGGATCTGCTAAGCATATGATGTACAAAATCTTAGATTATTGAGGTAGTTCCAAATGGAGTGAATATCTGTAAGTTGGACTTCTAGACTTATAATAAAGGAGCACCTTTTTCAGGTTATGTGTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336039" ref_strand="+" ref_description="SGN-U336039        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | actin-related protein, putative (ARP8), strong similarity to actin-related protein 8A (ARP8) (Arabidopsis thaliana) GI:21427473; contains Pfam profile PF00022: Actin; supporting cDNA gi:21427470:gb:AF507916.1: | chr5:22754551-22758242 REVERSE | Aliases: MDA7.26, AT5G56185(evalue: 6e-20, score=94.7) genbank/nr: gi|30696705|ref|NP_568836.2| actin-related protein 8B (ARP8) protein [Arabidopsis thaliana] gi|9758638|dbj|BAB09300.1| contains similarity to actin~gene_id:MDA7.24 [Arabidopsis thaliana] gi|21427471|gb|AAM53248.1| actin-related protein 8B [Arabidopsis thaliana] gi|21489926|tpg|DAA00031.1| TPA: actin-related protein 8B; AtARP8B [Arabidopsis thaliana](evalue: 4e-18, score=94.7)">
      <seq>ccacttcgagcaattccacctcaacttcgatctcgactgtcaattccatggatcggttcgaccagatgatgatgtatatacagacggcgtccaccggagaatttgatcggattccgttagatattttcattcaaattttgaagattttagggccaaaagagtctgctaagctgacttctgtatgtaaatcctggaaatacattgtttccgataatcgcctatggatttactttcttcagaatcaccatgagccttgggattctacttttttctctgaaactcacttgagatctggacctcttaggtaaattcctttttacagttctgctttttgaatgtcaaattaggtgaactttccaattggtttaatgtaatttagctgaactaatttgggacggagggagtagtagatgaaagagtgaagtatagatgaggatatcatgagtagctggtttgataaggtgtatgatttgtaggacgtttccaaattcagtaccagaattgtcattcatgagtatttatggtcaacgtgctcaagtgcccggtgctattattattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="-" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="76214" stop="75055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75914" g_stop="75355" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="-" ref_id="SGN-U336039" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75914" e_stop="75355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAGGTAAATTCCTTTTTACAGTTCTGCTTTTTGAATGTCAAATTAGGTGAACTTTCCAATTGGTTTAATGTAATTTAGCTGAACTAATTTGGGACGGAGGGAGTAGTAGATGAAAGAGTGAAGTATAGATGAGGATATCATGAGTAGCTGGTTTGATAAGGTGTATGATTTGTAGGACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGA</genome_strand>
        <mrna_strand>CCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAGGTAAATTCCTTTTTACAGTTCTGCTTTTTGAATGTCAAATTAGGTGAACTTTCCAATTGGTTTAATGTAATTTAGCTGAACTAATTTGGGACGGAGGGAGTAGTAGATGAAAGAGTGAAGTATAGATGAGGATATCATGAGTAGCTGGTTTGATAAGGTGTATGATTTGTAGGACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338871" ref_strand="-" ref_description="SGN-U338871        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | photosystem I reaction center subunit V, chloroplast, putative / PSI-G, putative (PSAG), identical to SP:Q9S7N7; similar to SP:Q00327 Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) {Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG / psaK | chr1:20806336-20807115 REVERSE | Aliases: F20N2.33, F20N2_33(evalue: 1e-49, score=193) genbank/nr: gi|52001191|gb|AAU21476.1| chloroplast photosystem I reaction center V [Camellia sinensis] (evalue: 6e-53, score=211)">
      <seq>gggggagggggggtggggccccccccccggccnntttttttnttatttttttttcttcccccccctttttttttttttttttttttttttttttttttttttttttactagtaattctttggcacaaaaccacatgaatttcacataaaatcagttaacaaaaacacatatagtaaatatatttttgtttgatattcagccaaagaaactgggatcatatccattgctagaagtagcaaggatataataagcaacaatatgtccaatagatccccaagcaagcacatcaacaatattgaatccaactggatcatttgattttaacaaacttatatattccttagccctaacatctccagcttcaaagtgagaaattccattctgagatggcacctgtttcgctacattttctctctggaaattgaagaaaacgaaccttccaaggaaaagcgaaagcccagtgctcaaactgatgacaacggatggattgagttcagctttcacagcgagatttcggggttttttggtgataggtttgaaggcgatgggtttgttgaggaagagggaagagtcggtgggtttgttgagaggtctgagaccttggaaagttggtgcagaaaacagagctgatgccattttttgagtttgttgtttgatgaaatgcaatgcaaatttgggtgtgttgaggagtatatgtggttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="-" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="108169" stop="88344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93591" g_stop="93492" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.470"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93491" i_stop="90774" i_length="2718">
            <donor d_prob="0.639" d_score="0.56"/>
            <acceptor a_prob="0.427" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90773" g_stop="90767" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="105" r_length="7" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90766" i_stop="89244" i_length="1523">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89243" g_stop="88644" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="705" r_length="600" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="-" ref_id="SGN-U338871" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338871" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93591" e_stop="93492"/>
          <exon e_start="90773" e_stop="90767"/>
          <exon e_start="89243" e_stop="88644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACGTGACAGTCAATTTTCCACACATTAGCAGTTTTAGAATGACTCTTCCTAATCCCTTCCCTCTCTTCCTCTTCTTCTTCTCATTTTCTCATATTAGTAATTATCTCTGCGTTTTTTAAGCTCATGAATTTTTTTTTTCCTCGCCATGACTTTCCTTTTCAGCTAAGTTACCTCCTTCTCATGAGCTCGTAGTTAACATATATATTTTTTCTATAAATTTTACTGTTTAGCTACAAAATTTGTTTATTCGCTTGTTATTCAAGTTGGCATGGGTACGTTACTGATAAATCAGATCTCGGAAAAGGAGGTGTTAGGAGATGAGAAAGATGATGTTATGGGATTTGGAGATGAAGATGAAATTTCGAAAGATAATAAGAGGAGGATTTGTCGTGTGTGTAAGAAAGTATTTGGTTCTGGTAAAGCATTAGGAGGTCACATGAGAATTCACGTTGAGTCTCGTTCTAAAAAGGAAAAATCAAAACCACGTGAAGAAGTGGATGTAGAAAATTGCAATAATGATGAGTTGGTACCAATTTGTAAAGTCTGTGGTAAGGTTTTTCCATCGATGAAATCGTTGTTTGGGCATATGAGATCTCATCCTGAACGGGAATGGAGAGGAATTCTTCCTCCTCATTTGAAATCTAACGATGTAAAAAAAGCGAAAAAAACAGCTTCTGTACCTGGATGGTCAGTTACAGCTAAGCGAGGGAGAAAGCCCAATGCTGAAGAAGAAGATGAACAATTGCAGGATGCTGTTCATCACCTTATGCTGCTCGCAAACGGAGATTCAATCGAGTCTGTTGTTACTGGACATGATCATACTCCTGAAGAAGAATTGGAGAAAACGAACAGTAATTCTCTTACTTCCAAAGCTGAAAATGAGGAATTTGTTTCTGAAGAATTGGATAGGAAGAAAAAGAAGAGGAAGTTGAGGCATCTGAATTCTGTACATGATAGTCCAGCTTCAGTTGCAGTTACAGCAACGCCTGAAAAATACGAGTGCAACACTTGTGGGAAAAGCTTCGCAACTCATCAAGCACTTGGTGGACATAAATCAAGTCACAATAAGTTGAGAATCGTAATCGAAAATTCCAACGATTCAATCATTGAAGAAGCAGCTGCTAGCAGCTCAAAGTTGTTGGGTGATAGCAAATTATCAACCACTGGAGGAAGAATTGCGGATTTTGATCTCAATGAATTGCCCTCTGATCATGACAATGAACTTGCTGGTAATCCTGATTACTTTCCCTTTTTTTCTATTTAACAATATTGAAGTCTTGAAGTTTGATCAATCGACTCCTCGGATGCTTTCTGCACCAGACTGTTATCGATAGTACATTAGTTTTAGTCTATATATCAGTTTAAATTTCTAATCATTGCAAAAATACTTAGTAATTAGCCATCTTGGTTACGTAGCTTGTGTTCTTTTTTCCTTGTTTAACATCCTTAGCTTAATTATGTGGTGTTTTGAAGTTGGGATTTGTTTGTTATTATCTTGATTGGAAGCATAATTGTCTAAACAAGCCTGCTGGAAAACACCAAATGTATATAAATATGCACAAGATTTCTTGGTTTATTAATTTAGTTTCGATTTCTCTCAGAATTGTTTTTGCTTGAATCGTCGATCTATAAAAAAACAACTCTCTTAAAGATCTGTTATAACTTCACTATCTCGGGTTTGTTATTATTATTGTTGATTTCTCCGTGACATATATTTAGGTTGTGTTTGAGGGCTACTTTCTCCATTTGCTGGCTTTTTACTTTACAATAGTTAATTTTGATTAATTTTTGAATGAAAAATTATTACTATAAGTTGCATTTTAATATGATAAGAAAACTGAATTTCAAAATTTTGGTCAAAATTCACGTAATTTGAAACTTCGAATCTTGGTAAATTAAAAGCCATATATAGTTTGGGTCGGAAGGGGAGGTAGATGTGGTGTGATTGCTTGATTTCTTTTTCAAAAATAACCTTTCTGTCTCCGTTGTAAATCAATACAGTTTATATGTTATTGTTGTTGTAGTATTTAATAAGACTAAAAAAATAATGAAATCTCGATAAATTTAGTCAAACTTTATCATTTATTCTGATTAGGAAGAAAGAGAAATTCAAGGACACATAGAAGACCAAAGGAAATCTTTAAACAATTGGACTCTAAACTTTGGTTGCAAGTATATAACTATAAAAAAGAATGTGTAAATCCTTTTAACAAATTACTCCTTTCATCTCAAATCACTAGTGACGTTTTCGATATTTTGAAATGTATTTTTTATTATATTAATATTTGAGAATTAATTTTTTTGAATCTAGAATTTATCAAAAATTTAAGGTCAGATAAATATTCATTTTTTTTAGCTTCACTCGTGGAATTAAATTGAATATGGTATTATCATATTGATATTATATCGGGTACAATAGTGTCATATTGATATAAGAAGAACCATATTATAATATTGATATTATCATATTGATGTTATATTATCATATTGATATTATATTGGGTATAATAGTATCATATTGATAAAAGAAGAATCACAATTTAAAATACTTTTCAGAAAGATTTTGAATATTTAACTTTTAAATTTCAAATATTAAATTAGTCAAATTAACTTATGATTTATAACTTATACTTCAAATATTAAATTAGTCAAATTAACTTATGATTTATAACTTATACTACAATATTTTTCATGTAGTTTTTGAATATTAGTCTGTCCAATATAATTTTTCAAAAATTAGTTAAATTAACTTTTGAAAAGAAATGATATTTTGAGAGGTAGGGAAGTATTGTGATGATTGAATTGATATATTAGTTAATTTGTAAGTGTTCAAACCGTAAGTCACGGCTTAGGAAGAGGAATAGAAGGTCTTGTAAGAAGAGACTATAAAGGAGAAAAACCAAAAACACACACACACTATATATATATATATATATATATATATATATAATGCAAAAATCATTTTTTGTTGATATATTTACCTACGTGGGATCAGAAATTAGATGTATCCAGTATTTACACTGATAAACTAAATATAACATTTTACCATAACTAGCTAACATTTTACCATAACTAGCTATTGTAGAAACTATAGTTTAGTTTATCATAGCAAAACTATATACATATATACTTTGATTTAGAACAAGAAACTATTTTTTACAAGTTGAAAAATACATTTACTTTTTTAAACCTAGGCTAAATTAATTCTTTTTATATTAATTAGCCATACACAAACAAATTACAAAAGCTTTTCATATGACACCTATAGAGAAAATGAAGATGGTGACTAATTTTCCTTTTCTGAAAGATTATAATTCTGAAACATTTAGGAGGGAATTAACGGTAAAAAATATATGGTAAAGGCAAGAAATAAGTATTATTAAGTCCCAACTGTTTACTGCCCACATTCTCGTGACCATAATATATATGAAAGCGTCATTCCAAAATTCCCCACTATTATTTTTACTTTATATATTCTCATCATCGCTTGGTATGAAGTATAAAAATTATATTGAATAACGTATGTTAGAAATAAAAAGCTTAGAAAAAGTTTTGTATTGTTAATATCATGATTTATTATTGATAAGAATACTGTTGAACAAGACGTACAAGTAAGATTATGTATTAGCTAGTTATACTATTGAAAACACGAGGTTTTAACCAAACTAAGTCATTATATAAAGTCATTCACCAAAATAATATGTTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCACAGTAACGTTTTAGGATATATTTTATTTTTTAAAAGTTGATGGCGTCAGATTGATATACATTACTCACAGTAACGTTTTACTCCTAAAACGTTACTCACAGCAACGTTTTAGGTGTAAAACGTTACTGAAAATAACGTTTTAAAAGTAAAACGTTACTTACAGTAACATATATCAACCTAATGCTGTTAGTTTTTAAAAAATAAAATATATCCTAAAACGTTACCGTGAAATACGTTTATACTAGTTTTGTAAAAATTTAGAAAAATGTATTACTTTGGTAAATTGTTTTATATAATGACTTAGTTTGGTTAAAAATTCTGAAAACACTATCAAAAAAGGAATTCGATAATACCAGTATTATTTTCTCTAATATATCCTACCATACGGATCCCTACGCGAAGTGATGGAGCTATAATTTATATAGTCATCTTCTAAGATATTATTTTCAATTCATTTTTGAAGCAATGGGAACCAAGCAATCCGATTAGATCTATTTCAGTTGAAAGGCTCTCTGCCTCGTGGCATTATTGGAAACCATTCATCACAGCGAAATTTTTTGGATGCATAGTCGAATTCAAATGCAAAAGAAAACAGAGATAGTACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTGTTGTTTGATGAAATGCAATGCAAATTTGGGTGTGTTGAGGAGTATATGTGGTTATTG</genome_strand>
        <mrna_strand>GGGGGAGGGGGGGT-GGGGCCCCCCCCCCGGCCNNTTTTTTTNTTATTTTTTTTTCTTCC-CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTGTTGTTTGATGAAATGCAATGCAAATTTGGGTGTGTTGAGGAGTATATGTGGTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314594" ref_strand="+" ref_description="SGN-U314594        Tomato 200607 #1 [23 ESTs aligned] arabidopsis/peptide: | Symbol: None | photosystem I reaction center subunit V, chloroplast, putative / PSI-G, putative (PSAG), identical to SP:Q9S7N7; similar to SP:Q00327 Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) {Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG / psaK | chr1:20806336-20807115 REVERSE | Aliases: F20N2.33, F20N2_33(evalue: 7e-50, score=193) genbank/nr: gi|52001191|gb|AAU21476.1| chloroplast photosystem I reaction center V [Camellia sinensis] (evalue: 3e-53, score=211)">
      <seq>caataaccacatatactcctcaacacacccaaatttgcattgcatttcatcaaacaacaaactcaaaaaatggcatcagctctgttttctgcaccaactttccaaggtctcagacctctcaacaaacccaccgactcttccctcttcctcaacaaacccatcgccttcaaacctatcaccaaaaaaccccgaaatctcgctgtgaaagctgaactcaatccatccgttgtcatcagtttgagcactgggctttcgcttttccttggaaggttcgttttcttcaatttccagagagaaaatgtagcgaaacaggtgccatctcagaatggaatttctcactttgaagctggagatgttagggctaaggaatatataagtttgttaaaatcaaatgatccagttggattcaatattgttgatgtgcttgcttggggatctattggacatattgttgcttattatatccttgctacttctagcaatggatatgatcccagtttctttggctgaatatcaaacaaaaatatatttactatatgtgtttttgttaactgattttatgtgaaattcatgtggttttgtgccaaagaattactagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacggggggggggggggggccccatttcccccaaaagggggggggaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="+" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="88344" stop="108174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88644" g_stop="89245" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89246" i_stop="89813" i_length="568">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89814" g_stop="89825" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="614" r_length="12" r_score="0.833"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89826" i_stop="90111" i_length="286">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90112" g_stop="90133" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="636" r_length="22" r_score="0.682"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90134" i_stop="91827" i_length="1694">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.682" a_score="0.42"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91828" g_stop="91894" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="701" r_length="65" r_score="0.448"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="+" ref_id="SGN-U314594" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88644" e_stop="89245"/>
          <exon e_start="89814" e_stop="89825"/>
          <exon e_start="90112" e_stop="90133"/>
          <exon e_start="91828" e_stop="91894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAACCACATATACTCCTCAACACACCCAAATTTGCATTGCATTTCATCAAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACTATCTCTGTTTTCTTTTGCATTTGAATTCGACTATGCATCCAAAAAATTTCGCTGTGATGAATGGTTTCCAATAATGCCACGAGGCAGAGAGCCTTTCAACTGAAATAGATCTAATCGGATTGCTTGGTTCCCATTGCTTCAAAAATGAATTGAAAATAATATCTTAGAAGATGACTATATAAATTATAGCTCCATCACTTCGCGTAGGGATCCGTATGGTAGGATATATTAGAGAAAATAATACTGGTATTATCGAATTCCTTTTTTGATAGTGTTTTCAGAATTTTTAACCAAACTAAGTCATTATATAAAACAATTTACCAAAGTAATACATTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCACGGTAACGTTTTAGGATATATTTTATTTTTTAAAAACTAACAGCATTAGGTTGATATATGTTACTGTAAGTAACGTTTTACTTTTAAAACGTTATTTTCAGTAACGTTTTACACCTAAAACGTTGCTGTGAGTAACGTTTTAGGAGTAAAACGTTACTGTGAGTAATGTATATCAATCTGACGCCATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACTGTGAAATACGTTTATACTAGTTTTGTAAAAATTTAGAAAAACATATTATTTTGGTGAATGACTTTATATAATGACTTAGTTTGGTTAAAACCTCGTGTTTTCAATAGTATAACTAGCTAATACATAATCTTACTTGTACGTCTTGTTCAACAGTATTCTTATCAATAATAAATCATGATATTAACAATACAAAACTTTTTCTAAGCTTTTTATTTCTAACATACGTTATTCAATATAATTTTTATACTTCATACCAAGCGATGATGAGAATATATAAAGTAAAAATAATAGTGGGGAATTTTGGAATGACGCTTTCATATATATTATGGTCACGAGAATGTGGGCAGTAAACAGTTGGGACTTAATAATACTTATTTCTTGCCTTTACCATATATTTTTTACCGTTAATTCCCTCCTAAATGTTTCAGAATTATAATCTTTCAGAAAAGGAAAATTAGTCACCATCTTCATTTTCTCTATAGGTGTCATATGAAAAGCTTTTGTAATTTGTTTGTGTATGGCTAATTAATATAAAAAGAATTAATTTAGCCTAGGTTTAAAAAAGTAAATGTATTTTTCAACTTGTAAAAAATAGTTTCTTGTTCTAAATCAAAGTATATATGTATATAGTTTTGCTATGATAAACTAAACTATAGTTTCTACAATAGCTAGTTATGGTAAAATGTTAGCTAGTTATGGTAAAATGTTATATTTAGTTTATCAGTGTAAATACTGGATACATCTAATTTCTGATCCCACGTAGGTAAATATATCAACAAAAAATGATTTTTGCATTATATATATATATATATATATATATATATATAGTGTGTGTGTGTTTTTGGTTTTTCTCCTTTATAGTCTCTTCTTACAAGACCTTCTATTCCTCTTCCTAAGCCGTGACTTACGGTTTGAACACTTACAAATTAACTAATATATCAATTCAATCATCACAATACTTCCCTACCTCTCAAAATATCATTTCTTTTCAAAAGTTAATTTAACTAATTTTTGAAAAATTATATTGGACAGACTAATATTCAAAAACTACATGAAAAATATTGTAGTATAAGTTATAAATCATAAGTTAATTTGACTAATTTAATATTTGAAGTATAAGTTATAAATCATAAGTTAATTTGACTAATTTAATATTTGAAATTTAAAAGTTAAATATTCAAAATCTTTCTGAAAAGTATTTTAAATTGTGATTCTTCTTTTATCAATATGATACTATTATACCCAATATAATATCAATATGATAATATAACATCAATATGATAATATCAATATTATAATATGGTTCTTCTTATATCAATATGACACTATTGTACCCGATATAATATCAATATGATAATACCATATTCAATTTAATTCCACGAGTGAAGCTAAAAAAAATGAATATTTATCTGACCTTAAATTTTTGATAAATTCTAGATTCAAAAAAATTAATTCTCAAATATTAATATAATAAAAAATACATTTCAAAATATCGAAAACGTCACTAGTGATTTGAGATGAAAGGAGTAATTTGTTAAAAGGATTTACACATTCTTTTTTATAGTTATATACTTGCAACCAAAGTTTAGAGTCCAATTGTTTAAAGATTTCCTTTGGTCTTCTATGTGTCCTTGAATTTCTCTTTCTTCCTAATCAGAATAAATGATAAAGTTTGACTAAATTTATCGAGATTTCATTATTTTTTTAGTCTTATTAAATACTACAACAACAATAACATATAAACTGTATTGATTTACAACGGAGACAGAAAGGTTATTTTTGAAAAAGAAATCAAGCAATCACACCACATCTACCTCCCCTTCCGACCCAAACTATATATGGCTTTTAATTTACCAAGATTCGAAGTTTCAAATTACGTGAATTTTGACCAAAATTTTGAAATTCAGTTTTCTTATCATATTAAAATGCAACTTATAGTAATAATTTTTCATTCAAAAATTAATCAAAATTAACTATTGTAAAGTAAAAAGCCAGCAAATGGAGAAAGTAGCCCTCAAACACAACCTAAATATATGTCACGGAGAAATCAA</genome_strand>
        <mrna_strand>CAATAACCACATATACTCCTCAACACACCCAAATTTGCATTGCATTTCATCAAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAACGGGGGGGGGGGGGGGGCCCCATTTCCCCCA-A-AAGGGGGGGGGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314595" ref_strand="+" ref_description="SGN-U314595        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | photosystem I reaction center subunit V, chloroplast, putative / PSI-G, putative (PSAG), identical to SP:Q9S7N7; similar to SP:Q00327 Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) {Hordeum vulgare}; contains Pfam profile PF01241: Photosystem I psaG / psaK | chr1:20806336-20807115 REVERSE | Aliases: F20N2.33, F20N2_33(evalue: 7e-50, score=193) genbank/nr: gi|52001191|gb|AAU21476.1| chloroplast photosystem I reaction center V [Camellia sinensis] (evalue: 3e-53, score=211)">
      <seq>aaacaacaaactcaaaaaatggcatcagctctgttttctgcaccaactttccaaggtctcagacctctcaacaaacccaccgactcttccctcttcctcaacaaacccatcgccttcaaacctatcaccaaaaaaccccgaaatctcgctgtgaaagctgaactcaatccatccgttgtcatcagtttgagcactgggctttcgcttttccttggaaggttcgttttcttcaatttccagagagaaaatgtagcgaaacaggtgccatctcagaatggaatttctcactttgaagctggagatgttagggctaaggaatatataagtttgttaaaatcaaatgatccagttggattcaatattgttgatgtgcttgcttggggatctattggacatattgttgcttattatatccttgctacttctagcaatggatatgatcccagtttctttggctgaatatcaaacaaaaatatatttactatatgtgtttttgttaactgattttatgtgaaattcatgtggttttgtgccaaagaattactagtactatctctgttttcttttgcatttgaattcgactatgcatccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccgggggggggggggggggaccaatttcccccaagaggggggggaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="+" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="88395" stop="108164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88695" g_stop="89290" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89291" i_stop="89813" i_length="523">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89814" g_stop="89825" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="608" r_length="12" r_score="0.833"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89826" i_stop="90111" i_length="286">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90112" g_stop="90153" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="649" r_length="41" r_score="0.571"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90154" i_stop="91209" i_length="1056">
            <donor d_prob="0.000" d_score="0.57"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91210" g_stop="91241" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="680" r_length="31" r_score="0.688"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="+" ref_id="SGN-U314595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88695" e_stop="89290"/>
          <exon e_start="89814" e_stop="89825"/>
          <exon e_start="90112" e_stop="90153"/>
          <exon e_start="91210" e_stop="91241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACTATCTCTGTTTTCTTTTGCATTTGAATTCGACTATGCATCCAAAAAATTTCGCTGTGATGAATGGTTTCCAATAATGCCACGAGGCAGAGAGCCTTTCAACTGAAATAGATCTAATCGGATTGCTTGGTTCCCATTGCTTCAAAAATGAATTGAAAATAATATCTTAGAAGATGACTATATAAATTATAGCTCCATCACTTCGCGTAGGGATCCGTATGGTAGGATATATTAGAGAAAATAATACTGGTATTATCGAATTCCTTTTTTGATAGTGTTTTCAGAATTTTTAACCAAACTAAGTCATTATATAAAACAATTTACCAAAGTAATACATTTTTCTAAATTTTTACAAAACTAGTATAAACGTATTTCACGGTAACGTTTTAGGATATATTTTATTTTTTAAAAACTAACAGCATTAGGTTGATATATGTTACTGTAAGTAACGTTTTACTTTTAAAACGTTATTTTCAGTAACGTTTTACACCTAAAACGTTGCTGTGAGTAACGTTTTAGGAGTAAAACGTTACTGTGAGTAATGTATATCAATCTGACGCCATCAACTTTTAAAAAATAAAATATATCCTAAAACGTTACTGTGAAATACGTTTATACTAGTTTTGTAAAAATTTAGAAAAACATATTATTTTGGTGAATGACTTTATATAATGACTTAGTTTGGTTAAAACCTCGTGTTTTCAATAGTATAACTAGCTAATACATAATCTTACTTGTACGTCTTGTTCAACAGTATTCTTATCAATAATAAATCATGATATTAACAATACAAAACTTTTTCTAAGCTTTTTATTTCTAACATACGTTATTCAATATAATTTTTATACTTCATACCAAGCGATGATGAGAATATATAAAGTAAAAATAATAGTGGGGAATTTTGGAATGACGCTTTCATATATATTATGGTCACGAGAATGTGGGCAGTAAACAGTTGGGACTTAATAATACTTATTTCTTGCCTTTACCATATATTTTTTACCGTTAATTCCCTCCTAAATGTTTCAGAATTATAATCTTTCAGAAAAGGAAAATTAGTCACCATCTTCATTTTCTCTATAGGTGTCATATGAAAAGCTTTTGTAATTTGTTTGTGTATGGCTAATTAATATAAAAAGAATTAATTTAGCCTAGGTTTAAAAAAGTAAATGTATTTTTCAACTTGTAAAAAATAGTTTCTTGTTCTAAATCAAAGTATATATGTATATAGTTTTGCTATGATAAACTAAACTATAGTTTCTACAATAGCTAGTTATGGTAAAATGTTAGCTAGTTATGGTAAAATGTTATATTTAGTTTATCAGTGTAAATACTGGATACATCTAATTTCTGATCCCACGTAGGTAAATATATCAACAAAAAATGATTTTTGCATTATATATATATATATATATATATATATATATAGTGTGTGTGTGTTTTTGGTTTTTCTCCTTTATAGTCTCTTCTTACAAGACCTTCTATTCCTCTTCCTAAGCCGTGACTTACGGTTTGAACACTTACAAATTAACTAATATATCAATTCAATCATCACAATACTTCCCTACCTCTCAAAATATCATTTCTTTTCAAAAGTTAATTTAACTAATTTTTGAAAAATTATATTGGACAGACTAATATTCAAAAACTACATGAAAAATATTGTAGTATAAGTTATAAATCATAAGTTAATTTGACTAATTTAATATTTGAAGTATAAGTTATAAATCATAAGTTAATTTGACTAATTTAATATTTGAAATTTAAAAGTTAAATATTCAAAATCTTTCTGAAAAGTATTTTAAATTGTGATTCTTCTTTTATCAATATGATACTATTATACCCAATATAATATCAATATGATAATATAACATCAATATGATAATATCAATATTATAATATGGTTCTTCTTATATCAATATGACACTATTGTACCCGATATAATATCAATATGATAATACCATATTCAATTTAATTCCACGAGTGAAGCTAAAAAAAA</genome_strand>
        <mrna_strand>AAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACTATCTCTGTTTTCTTTTGCATTTGAATTCGACTATGCATCCAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAACCG-GGGGGGGGGGGGGGGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTT-CCCCCAAGAGGGGGGGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319555" ref_strand="+" ref_description="SGN-U319555        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, ; expression supported by MPSS | chr5:22767886-22769589 REVERSE | Aliases: K24C1.2, K24C1_2(evalue: 2e-22, score=103) genbank/nr: gi|15241152|ref|NP_200432.1| hypothetical protein [Arabidopsis thaliana] gi|9758748|dbj|BAB09112.1| gene_id:K24C1.2~unknown protein [Arabidopsis thaliana](evalue: 2e-20, score=103)">
      <seq>gggagataatatacaaattggctagaaacaataaagatagttgcaacagttcaggcggctattaatttcccaaatttgttcccaattctagggtttccataatctcaattctcttcgaatttctcttggaaatccagcagaataatgaatgaaaagggtgactttgctacaagtaatggtacaaaaggtgaaaggtcaatgaactatgatgaagaatccagtgatgaagctcaggacagagaaaggccaattggtgaggaacttggggctggtctcgagagagggaatgatagggagtctgaaaatgtgtcaaaagaagatctagctgctgaatctccgtgggatgttaatgaagagaagagtgagaatcacggttcatccactgatcacgagcctctaacggaatctatcttcaacttccatgctgctcaagaagctcttgctagtgaaattcagaaattcaaagaaatagggaaagatactaactttggtcattcacttgaggatgttggtataccttcaaatttcacgtcagatgactcagattttcctagatcaagcacatccgtgctgtcacagaacagagatggtgctcaaagttctcttaactccttggagtctgaagtgtatagcctaaagcagaatatattactgttgcaaaaccaggttcaggaggcagctgacctggctaaatccaaggaagcaagagttactgaacttgaagccattttaagtagtagctcaaagagtgaagaagagactactgaaggtgagttcgagagtctcttcagactgaaaattgaagctgaagttcagtatgtggcattgtcaacaacagcacaaaagttgagaagtgcagcagtatatcaacttaccctcttggaagaacagaagacactagcttcagaacaagcacagatggtgcacgtgctaggagatgccgaagcaaaggctgtagtgctcaagacacaaaccaagaagttggaaacttactgtgaagatttagcaagcactgccgaaaagctaaagctacagaagaaagtctgtaagtacagttcgtgttttttcatacagttggtgttgttggctgttgttgttggactgtttctgatgcagatatctcctgatcatgctgaacttgtacccacctaatgttagagaagtttctttctctctctttttttcttccactccctattatcaacatcgtcatccttcaatgttgaaagttagattagtttgttttttagatgtctatagatagctgaaatacctacttctcattttgctgagtctgtattcaagggtaatcatagaagatgatccgttttttgcttctgtaaaaaaaaaaaggctgtgcactttgaagttttttaacctggtctcatatcaatacgactttagacatttctgttcgtgtgtgatgaactatgtaatggtctaattggattgttggagttgcacaaacctatacaacttcagacatttcngtttgaagttgaagcaggaatggtatgcacatgaaacattcaaccacatggttgttgaagctcatgtagaaaaagcagcctgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="-" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="99962" stop="95110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99663" g_stop="99508" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99507" i_stop="98466" i_length="1042">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98465" g_stop="98174" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="448" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98173" i_stop="96532" i_length="1642">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96531" g_stop="95410" g_length="1122"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="1577" r_length="1129" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="-" ref_id="SGN-U319555" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1570</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99663" e_stop="99508"/>
          <exon e_start="98465" e_stop="98174"/>
          <exon e_start="96531" e_stop="95410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGATAATATACAAATTGGCTAGAAACAATAAAGATAGTTGCAACAGTTCAGGCGGCTATTAATTTCCCAAATTTGTTCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAATTTCTCTTGGAAATCCAGCAGAATAATGAATGAAAAGGTACGCCCAGTTACTTAATTGCTTCTCCATTTCCTAATTTTTTGCATCTGCAGTACAAGTTTTTACAATGAACGAATTCAATTTTGTTCAATATGATGATTTTTCAAGCTGCAAATTGTCGAAGCAATCATAATTGATTTTGTCGAGAAATTTTGTTTCAATTGTTATCCGTCAGCTGGAATGATGGTTGGTAGTTCTCGATCTTGATCTGGGTTCGTAAAAAAGGTTTAATTTTAATATATATTTGTCTCTAGTTATGGACTTGGAAGAACAAAATACAGCTAATAATAAGGAAATGATCACACCACCAATATTTGAAAATGCTAATCAAAGCAAGGTAGAAAGTAGTGATGGGTCTAGTCCTCCTGGGGATAATAGCAGTAATAATAATTTGGATGATGTGAAAGGCAAGGGAATTGACATTAAAGAGGTTGAGGATTATTCAACTCCCCTGGTGAAATCCTCTCCAATAACTAAGGGGTTTGGGTTGAAAAAATGGAAAAGGATGAAGCGGGATGCGCAGCGCCAGGATGGGGATAGTAGTGTTAACAGCGGTAAGCTGTTGAAACGGGGTTTGGCGAGTGAGTTTGCTAATGCAGAAAAACCTGCAACTTTTGCTGTGGGAAGGATCCAAAAAAGTGATGGATCTGTTTCATCAACGAATGCAGTATTCATGAATCCTGGAGTTCTGAGTGATGGATTTGGTGTAATAGGTGACTCTGGTTTGGCTATGGGGCCTAATTTTATTGCTGTATCGGAATCAGAGAACAGCGAGGATCGGAGTAGTAGGTCTTCTACTGCAGCTAGTGCTCCAAAGGCAAGGTATGAAGCACCTGTGCACCTTGGTTATCCATCTGACAAGCATTGGTTGAGGAGTTTGAGTGGGAAGAGCTTGAGCACATCAGCTCAGAAACCACATCAGAGAAAAGGTCGGGCTGAAACTTGTAAAAAGCCTAGAGGAGAAAGGGTCAAAATCGAGAAGGAAAACTCTCATTCCAGCATGGAATCTGACTCGCGAAGCTCTAATTTCCTCTTTATGCAGGGTGACTTTGCTACAAGTAATGGTACAAAAGGTGAAAGGTCAATGAACTATGATGAAGAATCCAGTGATGAAGCTCAGGACAGAGAAAGGCCAATTGGTGAGGAACTTGGGGCTGGTCTCGAGAGAGGGAATGATAGGGAGTCTGAAAATGTGTCAAAAGAAGATCTAGCTGCTGAATCTCCGTGGGATGTTAATGAAGAGAAGAGTGAGAATCACGGTTCATCCACTGATCACGAGCCTCTAACGGAATCTATCTTCAACTTCCATGCTGCTCAAGAAGCTCTTGCTAGTGGTACATCCTTCTGCTTAAATGATAATATCAATTAATCATGATTTGCCTCATAAATTTGTTCTTGCACATTCTGTATGTTGCACTAGGTGGCGTCTTTCTAGATGGATCAATATGCTTAGAGGATGGTACTTATGTTTGACACTTCCTATTTGGGCGTCATTCAAGAAATATATGCTAGCATCATCTAGGAACAATAATATCAAGTTTATTAGTCAGTGAATCTTTTTTTAGGAGGTAGCATTTATAATCCTTATATTGTGCATATCCCTAAAGAATCATTTGGAGATGGGCTATGCGTTCTCCTCTTCCAGGAGGTATTTAACTGTTTATATTTGGTTATCATGCTGTAACGTGTGTGCATATCAGACCATGGTGTTCTTTTCTTTTCTAAAAGCAGCTTTTATGTGCCTAATGTCATGTATTTTACAATTACTATTTCTTTTAATTTTTATCGGTATAATAACTTGGATTATACTATGAACGTGTTTCTGTTAGCAATAGCGGATTTCTTGAGAATGTATTTACAAATACAGAGACCACTTTCAACTTAAATCATGTCTAGCAAACCTTTGATAAAGTGGATCTCATGCTAACTGGAAACAGTCTACATAAGCTTATTAACTTTCTATTTCTGTTTGGACTTGAAACCACTTCCTTCTCTGACTCACCGTTCACACAAGTGCACTTAACTTTCTTTTATCTGCATCCAGACCCTTTCATTCAAATCTGTTATACCTGCTATAGGATGTTCTTGAGGTGTTAGAGATTGTAATTTGAAGAATTTAATTTCTGACTGAGAGAAAATAAAATCAGGATATCAATTCCACCTCCTTTTGTTATGGAAGAATTATGCTTATTGCTGAATTTGTTATTCAGAGCTGACCTTACAGTGTAGTAAGTTAGCCTCACTGGTAAGAGAGCCATTGTCATCACATTTGGGACACATGGGTGAGGAAGGCCTGACCATTTCTCAGCAAAAGAGGCCCTCTCTACGAACAAGGTACTGTTAAGATGGATAGGCTTCTAGCTCCCAGGGTTGGTGCCTTGTGTGCCTTGAACTATTTTTTAGAGGCTTCTTTGGGATTTCAGCCTGCTCCCACTCTATCCGAACGCCTCCTGTCCCACAAGGCTGTAGATAAAACAAATTACAGAGAAGCAAAAGTCATTTTATGTGAAGTTGAGAGTCTTGGTTAAAATAGAACTTTGTTTCTTGCTTTTGAAGCATTAGATGGACAGGTTTAGGTGCTTGCCCTCCTAGTTTAGTAGTGTAATCCGTATCATTGTCATATAAGGATAGTTGGTTATAGTTGTTGGTTTTGTTTGACGCCAGAAACAGATTACAAGGGAAGTACATATTATATCATTTTGAAGTAGTGGACCAGTTCCCTTTCTGTGAACGGTCTTTTTTTGGATGAGCTTTACTATGTCGTATGTTTGTACTATGCTTAAAGAACTTCTACTGATCTGTTCACTGAATAAGTATATCCATTGATTTTTGGTTGTTCACAGTCCATATTCCTTTAGCTTACCTTGTCGTTCTTTCTAATTTAATCTGATAAACCATGAAATATTCTTAAAAAATCATTGAATTTCTTATTATCCGTGCATTGGGACTAATTTTATTGATTTACTTTCTACACAGAAATTCAGAAATTCAAAGAAATAGGGAAAGATACTAACTTTGGTCATTCACTTGAGGATGTTGGTATACCTTCAAATTTCACGTCAGATGACTCAGATTTTCCTAGATCAAGCACATCCGTGCTGTCACAGAACAGAGATGGTGCTCAAAGTTCTCTTAACTCCTTGGAGTCTGAAGTGTATAGCCTAAAGCAGAATATATTACTGTTGCAAAACCAGGTTCAGGAGGCAGCTGACCTGGCTAAATCCAAGGAAGCAAGAGTTACTGAACTTGAAGCCATTTTAAGTAGTAGCTCAAAGAGTGAAGAAGAGACTACTGAAGGTGAGTTCGAGAGTCTCTTCAGACTGAAAATTGAAGCTGAAGTTCAGTATGTGGCATTGTCAACAACAGCACAAAAGTTGAGAAGTGCAGCAGTATATCAACTTACCCTCTTGGAAGAACAGAAGACACTAGCTTCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGATGATCCGTTTTTTGCTTCTGT-------AAAAGGCTGTGCACTTTGAAGTTTTTTAACCTGGTCTCATATCAATACGACTTTAGACATTTCTGTTCGTGTGTGATGAACTATGTAATGGTCTAATTGGATTGTTGGAGTTGCAGAAACCTATACAACTTCAGACATTTCGGTTTGAAGTTGAAGCAAAAATGGTATGCACATGAAACATTCAACCACATGGTTGTTGAAGCTCATGTAGAAAAGCAAGCCTGAACTT</genome_strand>
        <mrna_strand>GGGAGATAATATACAAATTGGCTAGAAACAATAAAGATAGTTGCAACAGTTCAGGCGGCTATTAATTTCCCAAATTTGTTCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAATTTCTCTTGGAAATCCAGCAGAATAATGAATGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACTTTGCTACAAGTAATGGTACAAAAGGTGAAAGGTCAATGAACTATGATGAAGAATCCAGTGATGAAGCTCAGGACAGAGAAAGGCCAATTGGTGAGGAACTTGGGGCTGGTCTCGAGAGAGGGAATGATAGGGAGTCTGAAAATGTGTCAAAAGAAGATCTAGCTGCTGAATCTCCGTGGGATGTTAATGAAGAGAAGAGTGAGAATCACGGTTCATCCACTGATCACGAGCCTCTAACGGAATCTATCTTCAACTTCCATGCTGCTCAAGAAGCTCTTGCTAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCAGAAATTCAAAGAAATAGGGAAAGATACTAACTTTGGTCATTCACTTGAGGATGTTGGTATACCTTCAAATTTCACGTCAGATGACTCAGATTTTCCTAGATCAAGCACATCCGTGCTGTCACAGAACAGAGATGGTGCTCAAAGTTCTCTTAACTCCTTGGAGTCTGAAGTGTATAGCCTAAAGCAGAATATATTACTGTTGCAAAACCAGGTTCAGGAGGCAGCTGACCTGGCTAAATCCAAGGAAGCAAGAGTTACTGAACTTGAAGCCATTTTAAGTAGTAGCTCAAAGAGTGAAGAAGAGACTACTGAAGGTGAGTTCGAGAGTCTCTTCAGACTGAAAATTGAAGCTGAAGTTCAGTATGTGGCATTGTCAACAACAGCACAAAAGTTGAGAAGTGCAGCAGTATATCAACTTACCCTCTTGGAAGAACAGAAGACACTAGCTTCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGATGATCCGTTTTTTGCTTCTGTAAAAAAAAAAAGGCTGTGCACTTTGAAGTTTTTTAACCTGGTCTCATATCAATACGACTTTAGACATTTCTGTTCGTGTGTGATGAACTATGTAATGGTCTAATTGGATTGTTGGAGTTGCACAAACCTATACAACTTCAGACATTTCNGTTTGAAGTTGAAGCAGGAATGGTATGCACATGAAACATTCAACCACATGGTTGTTGAAGCTCATGTAGAAAAAGCAGCCTGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336855" ref_strand="+" ref_description="SGN-U336855        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:4338366-4340403 REVERSE | Aliases: MDC11.20(evalue: 3e-10, score=62.8) genbank/nr: gi|18399981|ref|NP_566455.1| expressed protein [Arabidopsis thaliana] gi|15010792|gb|AAK74055.1| AT3g13360/MDC11_15 [Arabidopsis thaliana] gi|23506211|gb|AAN31117.1| At3g13360/MDC11_15 [Arabidopsis thaliana](evalue: 2e-08, score=62.8)">
      <seq>ttaatttcccaaattcgttcccaattctagggtttccataatctcaattctcttcgaatttatcaaaatctcttggaaatcctgcacaataatgaatgaaaagggtgactttgctacaagtaatggtacaaaaggtgaaaggtcaatgaactatgatggagaatccagtgatgaagctcaggacagagaaagaccaattggtgaggaacttcgggctggtctcgagagagggaatgatagggagtctgaaaatgtgtcacaagaagatctagctgctgaatctccgtgggatgttaatgaagagaagagtgagaatcacggttcatccactgatcacgatcctctaacggaatctatcctcaacttccaggctgctcaagaagctcttgctagtgaaattcagaaattcaaagaaatagggaaagatactaactttggtcattcacttgaggatgttggtataccttcaaatttcacgtcagatgacttagattttcctagaccaagcacatccgtgctgtcacagaacagagatggtgctcaacattctcttaacttctctgagtctgaagtgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="-" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="99902" stop="96049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99602" g_stop="99508" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99507" i_stop="98466" i_length="1042">
            <donor d_prob="0.998" d_score="0.57"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98465" g_stop="98174" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="395" r_length="292" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98173" i_stop="96532" i_length="1642">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96531" g_stop="96349" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="578" r_length="183" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="-" ref_id="SGN-U336855" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99602" e_stop="99508"/>
          <exon e_start="98465" e_stop="98174"/>
          <exon e_start="96531" e_stop="96349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTCCCAAATTTGTTCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAA--T-T-----TCTCTTGGAAATCCAGCAGAATAATGAATGAAAAGGTACGCCCAGTTACTTAATTGCTTCTCCATTTCCTAATTTTTTGCATCTGCAGTACAAGTTTTTACAATGAACGAATTCAATTTTGTTCAATATGATGATTTTTCAAGCTGCAAATTGTCGAAGCAATCATAATTGATTTTGTCGAGAAATTTTGTTTCAATTGTTATCCGTCAGCTGGAATGATGGTTGGTAGTTCTCGATCTTGATCTGGGTTCGTAAAAAAGGTTTAATTTTAATATATATTTGTCTCTAGTTATGGACTTGGAAGAACAAAATACAGCTAATAATAAGGAAATGATCACACCACCAATATTTGAAAATGCTAATCAAAGCAAGGTAGAAAGTAGTGATGGGTCTAGTCCTCCTGGGGATAATAGCAGTAATAATAATTTGGATGATGTGAAAGGCAAGGGAATTGACATTAAAGAGGTTGAGGATTATTCAACTCCCCTGGTGAAATCCTCTCCAATAACTAAGGGGTTTGGGTTGAAAAAATGGAAAAGGATGAAGCGGGATGCGCAGCGCCAGGATGGGGATAGTAGTGTTAACAGCGGTAAGCTGTTGAAACGGGGTTTGGCGAGTGAGTTTGCTAATGCAGAAAAACCTGCAACTTTTGCTGTGGGAAGGATCCAAAAAAGTGATGGATCTGTTTCATCAACGAATGCAGTATTCATGAATCCTGGAGTTCTGAGTGATGGATTTGGTGTAATAGGTGACTCTGGTTTGGCTATGGGGCCTAATTTTATTGCTGTATCGGAATCAGAGAACAGCGAGGATCGGAGTAGTAGGTCTTCTACTGCAGCTAGTGCTCCAAAGGCAAGGTATGAAGCACCTGTGCACCTTGGTTATCCATCTGACAAGCATTGGTTGAGGAGTTTGAGTGGGAAGAGCTTGAGCACATCAGCTCAGAAACCACATCAGAGAAAAGGTCGGGCTGAAACTTGTAAAAAGCCTAGAGGAGAAAGGGTCAAAATCGAGAAGGAAAACTCTCATTCCAGCATGGAATCTGACTCGCGAAGCTCTAATTTCCTCTTTATGCAGGGTGACTTTGCTACAAGTAATGGTACAAAAGGTGAAAGGTCAATGAACTATGATGAAGAATCCAGTGATGAAGCTCAGGACAGAGAAAGGCCAATTGGTGAGGAACTTGGGGCTGGTCTCGAGAGAGGGAATGATAGGGAGTCTGAAAATGTGTCAAAAGAAGATCTAGCTGCTGAATCTCCGTGGGATGTTAATGAAGAGAAGAGTGAGAATCACGGTTCATCCACTGATCACGAGCCTCTAACGGAATCTATCTTCAACTTCCATGCTGCTCAAGAAGCTCTTGCTAGTGGTACATCCTTCTGCTTAAATGATAATATCAATTAATCATGATTTGCCTCATAAATTTGTTCTTGCACATTCTGTATGTTGCACTAGGTGGCGTCTTTCTAGATGGATCAATATGCTTAGAGGATGGTACTTATGTTTGACACTTCCTATTTGGGCGTCATTCAAGAAATATATGCTAGCATCATCTAGGAACAATAATATCAAGTTTATTAGTCAGTGAATCTTTTTTTAGGAGGTAGCATTTATAATCCTTATATTGTGCATATCCCTAAAGAATCATTTGGAGATGGGCTATGCGTTCTCCTCTTCCAGGAGGTATTTAACTGTTTATATTTGGTTATCATGCTGTAACGTGTGTGCATATCAGACCATGGTGTTCTTTTCTTTTCTAAAAGCAGCTTTTATGTGCCTAATGTCATGTATTTTACAATTACTATTTCTTTTAATTTTTATCGGTATAATAACTTGGATTATACTATGAACGTGTTTCTGTTAGCAATAGCGGATTTCTTGAGAATGTATTTACAAATACAGAGACCACTTTCAACTTAAATCATGTCTAGCAAACCTTTGATAAAGTGGATCTCATGCTAACTGGAAACAGTCTACATAAGCTTATTAACTTTCTATTTCTGTTTGGACTTGAAACCACTTCCTTCTCTGACTCACCGTTCACACAAGTGCACTTAACTTTCTTTTATCTGCATCCAGACCCTTTCATTCAAATCTGTTATACCTGCTATAGGATGTTCTTGAGGTGTTAGAGATTGTAATTTGAAGAATTTAATTTCTGACTGAGAGAAAATAAAATCAGGATATCAATTCCACCTCCTTTTGTTATGGAAGAATTATGCTTATTGCTGAATTTGTTATTCAGAGCTGACCTTACAGTGTAGTAAGTTAGCCTCACTGGTAAGAGAGCCATTGTCATCACATTTGGGACACATGGGTGAGGAAGGCCTGACCATTTCTCAGCAAAAGAGGCCCTCTCTACGAACAAGGTACTGTTAAGATGGATAGGCTTCTAGCTCCCAGGGTTGGTGCCTTGTGTGCCTTGAACTATTTTTTAGAGGCTTCTTTGGGATTTCAGCCTGCTCCCACTCTATCCGAACGCCTCCTGTCCCACAAGGCTGTAGATAAAACAAATTACAGAGAAGCAAAAGTCATTTTATGTGAAGTTGAGAGTCTTGGTTAAAATAGAACTTTGTTTCTTGCTTTTGAAGCATTAGATGGACAGGTTTAGGTGCTTGCCCTCCTAGTTTAGTAGTGTAATCCGTATCATTGTCATATAAGGATAGTTGGTTATAGTTGTTGGTTTTGTTTGACGCCAGAAACAGATTACAAGGGAAGTACATATTATATCATTTTGAAGTAGTGGACCAGTTCCCTTTCTGTGAACGGTCTTTTTTTGGATGAGCTTTACTATGTCGTATGTTTGTACTATGCTTAAAGAACTTCTACTGATCTGTTCACTGAATAAGTATATCCATTGATTTTTGGTTGTTCACAGTCCATATTCCTTTAGCTTACCTTGTCGTTCTTTCTAATTTAATCTGATAAACCATGAAATATTCTTAAAAAATCATTGAATTTCTTATTATCCGTGCATTGGGACTAATTTTATTGATTTACTTTCTACACAGAAATTCAGAAATTCAAAGAAATAGGGAAAGATACTAACTTTGGTCATTCACTTGAGGATGTTGGTATACCTTCAAATTTCACGTCAGATGACTCAGATTTTCCTAGATCAAGCACATCCGTGCTGTCACAGAACAGAGATGGTGCTCAAAGTTCTCTTAACTCCTTGGAGTCTGAAGTGTATA</genome_strand>
        <mrna_strand>TTAATTTCCCAAATTCGTTCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAATTTATCAAAATCTCTTGGAAATCCTGCACAATAATGAATGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGACTTTGCTACAAGTAATGGTACAAAAGGTGAAAGGTCAATGAACTATGATGGAGAATCCAGTGATGAAGCTCAGGACAGAGAAAGACCAATTGGTGAGGAACTTCGGGCTGGTCTCGAGAGAGGGAATGATAGGGAGTCTGAAAATGTGTCACAAGAAGATCTAGCTGCTGAATCTCCGTGGGATGTTAATGAAGAGAAGAGTGAGAATCACGGTTCATCCACTGATCACGATCCTCTAACGGAATCTATCCTCAACTTCCAGGCTGCTCAAGAAGCTCTTGCTAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCAGAAATTCAAAGAAATAGGGAAAGATACTAACTTTGGTCATTCACTTGAGGATGTTGGTATACCTTCAAATTTCACGTCAGATGACTTAGATTTTCCTAGACCAAGCACATCCGTGCTGTCACAGAACAGAGATGGTGCTCAACATTCTCTTAACTTCTCTGAGTCTGAAGTGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336856" ref_strand="+" ref_description="SGN-U336856        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:4338366-4340403 REVERSE | Aliases: MDC11.20(evalue: 3e-05, score=45.8)">
      <seq>tattaatttcccaaatttgttcccaattctagggtttccataatctcaattctcttcgaatttctcttggaaatccagcagaataatgaatgaaaaggtacgcccagttacttaattgcttctccatttcctaattttttgcatctgcagtacaagtttttacaatgaacgaattcaattttgttcaatatgatgatttttcaagctgcaaattgtcgaagcaatcataattgattttgtcgagaaattttgtttcaattgttatccgtcagctggaatgatggttggtagttctcgatcttgatctgggttcgtaaaaaaggtttaattttaatatatatttgtctctagttatggacttggaagaacaaaatacagctaataataaggaaatgatcacaccaccaatatttgaaaatgctaatcaaagcaaggtagaaagtagtgatgggtctagtcctcctggggataatagcagtaataataatttggatgatgtgaaaggcaagggaattgacattaaagaggttgaggattattcaactcccctggtgaaatcctctccaataactaaggggtttgggttgaaaaaatggaaaaggatgaagcgggatgcgcagcgccaggatggggatagtagtgttaacagcggtaagctgttgaaacggggtttggcgagtgagtttgctaatgcagaaaaactgcaacttttgctgtgggaaggatcaaaaaagtgatggatctgtttctcaacgaatgcagtattcatgaatcctggagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="-" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="99904" stop="98517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99604" g_stop="98817" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="785" r_length="785" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="-" ref_id="SGN-U336856" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99604" e_stop="98817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAATTTCCCAAATTTGTTCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAATTTCTCTTGGAAATCCAGCAGAATAATGAATGAAAAGGTACGCCCAGTTACTTAATTGCTTCTCCATTTCCTAATTTTTTGCATCTGCAGTACAAGTTTTTACAATGAACGAATTCAATTTTGTTCAATATGATGATTTTTCAAGCTGCAAATTGTCGAAGCAATCATAATTGATTTTGTCGAGAAATTTTGTTTCAATTGTTATCCGTCAGCTGGAATGATGGTTGGTAGTTCTCGATCTTGATCTGGGTTCGTAAAAAAGGTTTAATTTTAATATATATTTGTCTCTAGTTATGGACTTGGAAGAACAAAATACAGCTAATAATAAGGAAATGATCACACCACCAATATTTGAAAATGCTAATCAAAGCAAGGTAGAAAGTAGTGATGGGTCTAGTCCTCCTGGGGATAATAGCAGTAATAATAATTTGGATGATGTGAAAGGCAAGGGAATTGACATTAAAGAGGTTGAGGATTATTCAACTCCCCTGGTGAAATCCTCTCCAATAACTAAGGGGTTTGGGTTGAAAAAATGGAAAAGGATGAAGCGGGATGCGCAGCGCCAGGATGGGGATAGTAGTGTTAACAGCGGTAAGCTGTTGAAACGGGGTTTGGCGAGTGAGTTTGCTAATGCAGAAAAACCTGCAACTTTTGCTGTGGGAAGGATCCAAAAAAGTGATGGATCTGTTTCATCAACGAATGCAGTATTCATGAATCCTGGAGTTCTG</genome_strand>
        <mrna_strand>TATTAATTTCCCAAATTTGTTCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAATTTCTCTTGGAAATCCAGCAGAATAATGAATGAAAAGGTACGCCCAGTTACTTAATTGCTTCTCCATTTCCTAATTTTTTGCATCTGCAGTACAAGTTTTTACAATGAACGAATTCAATTTTGTTCAATATGATGATTTTTCAAGCTGCAAATTGTCGAAGCAATCATAATTGATTTTGTCGAGAAATTTTGTTTCAATTGTTATCCGTCAGCTGGAATGATGGTTGGTAGTTCTCGATCTTGATCTGGGTTCGTAAAAAAGGTTTAATTTTAATATATATTTGTCTCTAGTTATGGACTTGGAAGAACAAAATACAGCTAATAATAAGGAAATGATCACACCACCAATATTTGAAAATGCTAATCAAAGCAAGGTAGAAAGTAGTGATGGGTCTAGTCCTCCTGGGGATAATAGCAGTAATAATAATTTGGATGATGTGAAAGGCAAGGGAATTGACATTAAAGAGGTTGAGGATTATTCAACTCCCCTGGTGAAATCCTCTCCAATAACTAAGGGGTTTGGGTTGAAAAAATGGAAAAGGATGAAGCGGGATGCGCAGCGCCAGGATGGGGATAGTAGTGTTAACAGCGGTAAGCTGTTGAAACGGGGTTTGGCGAGTGAGTTTGCTAATGCAGAAAAA-CTGCAACTTTTGCTGTGGGAAGGAT-CAAAAAAGTGATGGATCTGTTTC-TCAACGAATGCAGTATTCATGAATCCTGGAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336857" ref_strand="+" ref_description="SGN-U336857        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tcccaaatttgtatcccaagggtaggtgtttccatagatctcaattctcattcgaatttctcttggaaataccagctagaataatgtaatgaataaggtaccgcccagttaccattaattgcttctccatttacctaattgttttgcattctgcagtacaacgtttttacaatgaaccgaattcaattttgttcaatatgatgatttttcaagctgcaaattgtcgaagcaatcataattgattttgtcgagaaattttgtttcaattgttatccgtcagctggaatgatggttggtagttctcgatcttgatctgggttcgtaaaaaaggtttaattttaatatatatttgtctctagttatggacttggaagaacaaaatacagctaataataaggaaatgatcacaccaccaatatttgaaaatgctaatcaaagcaaggtagaaagtagtgatgggtctagtcctcctggggataatagcagcaataataatttggatgatgtgaaaggcaagggaattgacattaaagaggttgaggattattcaactcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="-" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="99875" stop="98755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99596" g_stop="99055" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="-" ref_id="SGN-U336857" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99596" e_stop="99055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAAATTTGT-TCCCAATTCTAGG-GTTTCCATA-ATCTCAATTCTC-TTCGAATTTCTCTTGGAAAT-CCAGC-AGAATAATG-AATGAA-AAGGTA-CGCCCAGTTA-C-TTAATTGCTTCTCCATTT-CCTAATT-TTTTGCA-TCTGCAGTACAA-GTTTTTACAATGAA-CGAATTCAATTTTGTTCAATATGATGATTTTTCAAGCTGCAAATTGTCGAAGCAATCATAATTGATTTTGTCGAGAAATTTTGTTTCAATTGTTATCCGTCAGCTGGAATGATGGTTGGTAGTTCTCGATCTTGATCTGGGTTCGTAAAAAAGGTTTAATTTTAATATATATTTGTCTCTAGTTATGGACTTGGAAGAACAAAATACAGCTAATAATAAGGAAATGATCACACCACCAATATTTGAAAATGCTAATCAAAGCAAGGTAGAAAGTAGTGATGGGTCTAGTCCTCCTGGGGATAATAGCAGTAATAATAATTTGGATGATGTGAAAGGCAAGGGAATTGACATTAAAGAGGTTGAGGATTATTCAACTCCCCT</genome_strand>
        <mrna_strand>TCCCAAATTTGTATCCCAAGGGTAGGTGTTTCCATAGATCTCAATTCTCATTCGAATTTCTCTTGGAAATACCAGCTAGAATAATGTAATGAATAAGGTACCGCCCAGTTACCATTAATTGCTTCTCCATTTACCTAATTGTTTTGCATTCTGCAGTACAACGTTTTTACAATGAACCGAATTCAATTTTGTTCAATATGATGATTTTTCAAGCTGCAAATTGTCGAAGCAATCATAATTGATTTTGTCGAGAAATTTTGTTTCAATTGTTATCCGTCAGCTGGAATGATGGTTGGTAGTTCTCGATCTTGATCTGGGTTCGTAAAAAAGGTTTAATTTTAATATATATTTGTCTCTAGTTATGGACTTGGAAGAACAAAATACAGCTAATAATAAGGAAATGATCACACCACCAATATTTGAAAATGCTAATCAAAGCAAGGTAGAAAGTAGTGATGGGTCTAGTCCTCCTGGGGATAATAGCAGCAATAATAATTTGGATGATGTGAAAGGCAAGGGAATTGACATTAAAGAGGTTGAGGATTATTCAACTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332991" ref_strand="+" ref_description="SGN-U332991        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>acaagtacagccatcccctacatctccagcctcgtttttgtgtaagagcagtggcagtggattgatgggtgccccctttggcagacaagactatttaggtaggggcaacttacatactgtgcgaaatggaccaaacgagacatgtgatatgaagaagtttgtagcaactcccatctctcattggcagaatgcaacttcagttgggccaaatgctgtcagagaaattattgtaattgatgattctccagaaaacgaggctaattctccatacaccatgaactcagggaaaatgcagattagctcaggctatacctcaaggtttgtggatctctgtgaaaatagaccgcgtggtgaaactggagcagctcagaatgcaaatttgcttactcaagtgaatgagcttcctgctaagacatggaatgtcaacccagacggttgtagtttagttcatccgagctctttctcagcttcctcatcacctgcaggtccttttagatcatctttatattattctccaggtttttcataaccaagaaatcgtcttttacatcttgactgacaaaagaaaacgcggcaaagttgagcagatgagtttttctagtttgggttttcgctttcatagcgtttgatgtttactcaaaacagtactgaaagttccatagatatatataatatatataaagcagtttaattactgaagccagttgaaagttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="-" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="114739" stop="113427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114439" g_stop="113730" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="714" polyA_stop="729"/>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="-" ref_id="SGN-U332991" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114439" e_stop="113730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTACAGCCATCCCCTACATCTCCAGCCTCGTTTTTGTGTAAGAGCAGTGGCAGTGGATTGATGGGTGCCCCCTTTGGCAGACAAGACTATTTAGGTAGGGGCAACTTACATACTGTGCGAAATGGACCAAACGAGACATGTGATATGAAGAAGTTTGTAGCAACTCCCATCTCTCATTGGCAGAATGCAACTTCAGTTGGGCCAAATGCTGTCAGAGAAATTATTGTAATTGATGATTCTCCAGAAAACGAGGCTAATTCTCCATACACCATGAACTCAGGGAAAATGCAGATTAGCTCAGGCTATACCTCAAGGTTTGTGGATCTCTGTGAAAATAGACCGCGTGGTGAAACTGGAGCAGCTCAGAATGCAAATTTGCTTACTCAAGTGAATGAGCTTCCTGCTAAGACATGGAATGTCAACCCAGACGGTTGTAGTTTAGTTCATCCGAGCTCTTTCTCAGCTTCCTCATCACCTGCAGGTCCTTTTAGATCATCTTTATATTATTCTCCAGGTTTTTCATAACCAAGAAATCGTCTTTTACATCTTGACTGACAAAAGAAAACGCGGCAAAGTTGAGCAGATGAGTTTTTCTAGTTTGGGTTTTCGCTTTCATAGCGTTTGATGTTTACTCAAAACAGTACTGAAAGTTCCATAGATATATATAATATATATAAAGCAGTTTAATTACTGAAGCCAGTTGAAA</genome_strand>
        <mrna_strand>ACAAGTACAGCCATCCCCTACATCTCCAGCCTCGTTTTTGTGTAAGAGCAGTGGCAGTGGATTGATGGGTGCCCCCTTTGGCAGACAAGACTATTTAGGTAGGGGCAACTTACATACTGTGCGAAATGGACCAAACGAGACATGTGATATGAAGAAGTTTGTAGCAACTCCCATCTCTCATTGGCAGAATGCAACTTCAGTTGGGCCAAATGCTGTCAGAGAAATTATTGTAATTGATGATTCTCCAGAAAACGAGGCTAATTCTCCATACACCATGAACTCAGGGAAAATGCAGATTAGCTCAGGCTATACCTCAAGGTTTGTGGATCTCTGTGAAAATAGACCGCGTGGTGAAACTGGAGCAGCTCAGAATGCAAATTTGCTTACTCAAGTGAATGAGCTTCCTGCTAAGACATGGAATGTCAACCCAGACGGTTGTAGTTTAGTTCATCCGAGCTCTTTCTCAGCTTCCTCATCACCTGCAGGTCCTTTTAGATCATCTTTATATTATTCTCCAGGTTTTTCATAACCAAGAAATCGTCTTTTACATCTTGACTGACAAAAGAAAACGCGGCAAAGTTGAGCAGATGAGTTTTTCTAGTTTGGGTTTTCGCTTTCATAGCGTTTGATGTTTACTCAAAACAGTACTGAAAGTTCCATAGATATATATAATATATATAAAGCAGTTTAATTACTGAAGCCAGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330781" ref_strand="+" ref_description="SGN-U330781        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gagagaaacatcacaaccttctgaagtctgcttctcatactataaagttttgcttgtccaagccagatcactgtcccaagattaagagtggtcaagagagcaccttttgtccaagagaaaatgttgacaaaatggattgcctaaataaggacctcagatctgcggaccagatgctatcaaatggattggcaaccataaaacaatgggcatgttcaaagagaactggcctcacaaggaagatcagtgataaggacaatcatcagctttctggcgctgatatgtcgactggcgtgcaaagtgacaatgatgtgttgcctcagacttatccatttaaaaagagaagcggtcttgtgaaatctccaagatcatctgtttgtttgcctgagagtagccaaagaatggggaatatgctacttgatcagcctcaagaagaacgtagcgaggaaccaccttctctacacaagaaagtggtggacttttcatcatctcaatcttcactcccatctaacaagaagagatccctagtgttacaaaggtgcaaaggaaaacatttgaaggtagatggccattctgtgaacaatcatccgagtatgactacaggccatgcactttctgtgaaaaatgtgagagttggaagaaacacagataactactctgaggtcaactgtgaacagtccaccgctcatccatcattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0309F18-vObdg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0309F18.1" temp_strand="-" temp_description="C07HBa0309F18.1  AC210366.3 htgs_phase:3 submitted_to_sgn_as:C07HBa0309F18 upload_account_name:france">
        <position start="117577" stop="115892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117277" g_stop="117198" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117197" i_stop="116809" i_length="389">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116808" g_stop="116192" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="697" r_length="617" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0309F18.1" gen_strand="-" ref_id="SGN-U330781" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0309F18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117277" e_stop="117198"/>
          <exon e_start="116808" e_stop="116192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAACATCACAACCTTCTGAAATCTGCTTCTCATACTAAAAAGTTTTGCTTGTCCAAGCCAGATCACTGTCCCAAGGTATGTTTTTAAAATCCTGGACATAAAGAAGTTCCCTCAGGTTTTGTTTTGTTCTTGAAACCCATCTTTTATCTAGTACATCTCATCTTCGAAAATTTCATTGCTTCCGAAACTGTAGCACTATAGTGCAGTAATGCTACTGCAAAATTTTAGGAGCGGAAAACAAAAGAATATTGGGAGAGCAATGTTAAACATCTCTTTCTGCACTTTGCCCTTCATGTTCGCTTAATTTCATGATTGTTTTGGTAAATTTGGTGGAAAGGAGGGGCGGGTGCAGGTGGGGTTTCATTTATCTTTTATCAAAAATATTTTGTTTGTACCAATTAGCAATCCTAGTATGTAATATATTAATTTGCTTTGAACTAAGTTGCTAAATATTTTATGAACAGATTAAGAGTGGTCAAGAGAGCACCTTTTGTCCAAGAGAAAATGTTGACAAAATGGATTGCCTAAATAAGGACCTCAGATCTGCGGACCAGATGCTATCAAATGGATTGGCAACCATAAAACAATGGGCATGTTCAAAGAGAACTGGCCTCACAAGGAAGATCAGTGATAAGGACAATCATCAGCTTTCTGGCGCTGATATGTCGACTGGCGTGCAAAGTGACAATGATGTGTTGCCTCAGACTTATCCATTTAAAAAGAGAAGCGGTCTTGTGAAATCTCCAAGATCATCTGTTTGTTTGCCTGAGAGTAGCCAAAGAATGGGGAATATGCTACTTGATCAGCCTCAAGAAGAACGTAGCGAGGAACCACCTTCTCTACACAAGAAAGTGGTGGACTTTTCATCATCTCAATCTTCACTCCCATCTAACAAGAAGAGATCCCTAGTGTTACAAAGGTGCAAAGGAAAACATTTGAAGGTAGATGGCCATTCTGTGAACAATCATCCGAAAATGACTACAGGCCATGCACTTTCTGTGAAAAATGTGAGAGTTGGAAGAAACACAGATAACTACTCTGAGGTCAACTGTGAACAGTCCACCGCTCATCCATCATTCTC</genome_strand>
        <mrna_strand>GAGAGAAACATCACAACCTTCTGAAGTCTGCTTCTCATACTATAAAGTTTTGCTTGTCCAAGCCAGATCACTGTCCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAGTGGTCAAGAGAGCACCTTTTGTCCAAGAGAAAATGTTGACAAAATGGATTGCCTAAATAAGGACCTCAGATCTGCGGACCAGATGCTATCAAATGGATTGGCAACCATAAAACAATGGGCATGTTCAAAGAGAACTGGCCTCACAAGGAAGATCAGTGATAAGGACAATCATCAGCTTTCTGGCGCTGATATGTCGACTGGCGTGCAAAGTGACAATGATGTGTTGCCTCAGACTTATCCATTTAAAAAGAGAAGCGGTCTTGTGAAATCTCCAAGATCATCTGTTTGTTTGCCTGAGAGTAGCCAAAGAATGGGGAATATGCTACTTGATCAGCCTCAAGAAGAACGTAGCGAGGAACCACCTTCTCTACACAAGAAAGTGGTGGACTTTTCATCATCTCAATCTTCACTCCCATCTAACAAGAAGAGATCCCTAGTGTTACAAAGGTGCAAAGGAAAACATTTGAAGGTAGATGGCCATTCTGTGAACAATCATCCGAGTATGACTACAGGCCATGCACTTTCTGTGAAAAATGTGAGAGTTGGAAGAAACACAGATAACTACTCTGAGGTCAACTGTGAACAGTCCACCGCTCATCCATCATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>25</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1143" PGL_stop="2842"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1143" e_stop="1203"/>
            <exon e_start="2174" e_stop="2388"/>
            <exon e_start="2527" e_stop="2660"/>
            <exon e_start="2750" e_stop="2842"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.811" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1143" e_stop="1203" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.811">
            <gDNA_intron_boundary i_start="1204" i_stop="2173" i_length="970"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2174" e_stop="2388" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.965">
            <gDNA_intron_boundary i_start="2389" i_stop="2526" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2527" e_stop="2660" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.998">
            <gDNA_intron_boundary i_start="2661" i_stop="2749" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2750" e_stop="2842" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1143" stop="1203"/>
              <exon start="2174" stop="2388"/>
              <exon start="2527" stop="2660"/>
              <exon start="2750" stop="2842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346789" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGTATAAATTTCATCAAGCTTGCAATTATATATACAATTACATCCGCCTCCAGCATACA : AGCTATCCAGAAATCAAACTGCTATCATGATCAAGGTCACAAGGCTACCTGTGGATATGAAAGTACTAGGTATATGGTAATATTTGGATTAATCCAAGTTATAGTGTCTCAAATTCCTGATTTTCCGAATATGAAGTGGCTCTCCGTAGTTGCTGCTGTCATGTCCTTCACATATTCAATTATCGGATCAGCACTTGGCTTAGCCAAAGTAATAG : AAAATGGAGAAATCAAAGGAAGCATTACAGGACTGCCAAGTTCTACAGCTGCTGAGAAAGTATGGTTGGTTGCTCAAGCGCTCGGGAACATTGCCTTTGCCTTTCCATTCTCTCTTATATTTCTGGAGGTTCAG : GACACATTAAAGGCACCTCCTCCAGAAAAGATCACCATGAAGAAGGTCTCAATTATGACATCCTGTATTACAACTTTTTTCTACCTTTGCTGT</gDNA_template>
            <first_frame> F  V  *  I  S  S  S  L  Q  L  Y  I  Q  L  H  P  P  P  A  Y   : K  L  S  R  N  Q  T  A  I  M  I  K  V  T  R  L  P  V  D  M  K  V  L  G  I  W  *  Y  L  D  *  S  K  L  *  C  L  K  F  L  I  F  R  I  *  S  G  S  P  *  L  L  L  S  C  P  S  H  I  Q  L  S  D  Q  H  L  A  *  P  K  *  *  :  K  M  E  K  S  K  E  A  L  Q  D  C  Q  V  L  Q  L  L  R  K  Y  G  W  L  L  K  R  S  G  T  L  P  L  P  F  H  S  L  L  Y  F  W  R  F  R :   T  H  *  R  H  L  L  Q  K  R  S  P  *  R  R  S  Q  L  *  H  P  V  L  Q  L  F  S  T  F  A   </first_frame>
            <second_frame>  S  Y  K  F  H  Q  A  C  N  Y  I  Y  N  Y  I  R  L  Q  H  T  :  S  Y  P  E  I  K  L  L  S  *  S  R  S  Q  G  Y  L  W  I  *  K  Y  *  V  Y  G  N  I  W  I  N  P  S  Y  S  V  S  N  S  *  F  S  E  Y  E  V  A  L  R  S  C  C  C  H  V  L  H  I  F  N  Y  R  I  S  T  W  L  S  Q  S  N  R :   K  W  R  N  Q  R  K  H  Y  R  T  A  K  F  Y  S  C  *  E  S  M  V  G  C  S  S  A  R  E  H  C  L  C  L  S  I  L  S  Y  I  S  G  G  S   : G  H  I  K  G  T  S  S  R  K  D  H  H  E  E  G  L  N  Y  D  I  L  Y  Y  N  F  F  L  P  L  L  </second_frame>
            <third_frame>   R  I  N  F  I  K  L  A  I  I  Y  T  I  T  S  A  S  S  I  Q :   A  I  Q  K  S  N  C  Y  H  D  Q  G  H  K  A  T  C  G  Y  E  S  T  R  Y  M  V  I  F  G  L  I  Q  V  I  V  S  Q  I  P  D  F  P  N  M  K  W  L  S  V  V  A  A  V  M  S  F  T  Y  S  I  I  G  S  A  L  G  L  A  K  V  I   : E  N  G  E  I  K  G  S  I  T  G  L  P  S  S  T  A  A  E  K  V  W  L  V  A  Q  A  L  G  N  I  A  F  A  F  P  F  S  L  I  F  L  E  V  Q  :  D  T  L  K  A  P  P  P  E  K  I  T  M  K  K  V  S  I  M  T  S  C  I  T  T  F  F  Y  L  C  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1145" stop="1203"/>
                    <exon start="2174" stop="2388"/>
                    <exon start="2527" stop="2660"/>
                    <exon start="2750" stop="2842"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RINFIKLAIIYTITSASSIQAIQKSNCYHDQGHKATCGYESTRYMVIFGLIQVIVSQIPDFPNMKWLSVVAAVMSFTYSIIGSALGLAKVIENGEIKGSITGLPSSTAAEKVWLVAQALGNIAFAFPFSLIFLEVQDTLKAPPPEKITMKKVSIMTSCITTFFYLCC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3883" PGL_stop="4220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3883" e_stop="4220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="3883" e_stop="4220" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3883" stop="4220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329993" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTCAGAAAAGAATTGAAAGTTGGAAAAGCAAAGCTATCATGCTTCGCGTCTTTACAATGGTATGTCTGGTTGTGATATTGTACGCATTTGTTGGGTCTATCAGAGGAGTTATTGTTGCTAGGTTCAGGTAAAAATGCTTCTTCACGTTTCTACAAGGTTTGCGTACATGCTATCCTCTCCGAACCCCCACTTGTGAGATTATACTAGATATGTTATTTAAAAAAGAAATGTAAATAAATTCTTTATAGTTTTAAAATGTTCGGTATGTAAACAATGCCTTACGTTGTCAACAACCAAATATGTATTATAAAATTTCATCGATTTTCGTGTACTATA</gDNA_template>
            <first_frame> N  S  E  K  N  *  K  L  E  K  Q  S  Y  H  A  S  R  L  Y  N  G  M  S  G  C  D  I  V  R  I  C  W  V  Y  Q  R  S  Y  C  C  *  V  Q  V  K  M  L  L  H  V  S  T  R  F  A  Y  M  L  S  S  P  N  P  H  L  *  D  Y  T  R  Y  V  I  *  K  R  N  V  N  K  F  F  I  V  L  K  C  S  V  C  K  Q  C  L  T  L  S  T  T  K  Y  V  L  *  N  F  I  D  F  R  V  L   </first_frame>
            <second_frame>  T  Q  K  R  I  E  S  W  K  S  K  A  I  M  L  R  V  F  T  M  V  C  L  V  V  I  L  Y  A  F  V  G  S  I  R  G  V  I  V  A  R  F  R  *  K  C  F  F  T  F  L  Q  G  L  R  T  C  Y  P  L  R  T  P  T  C  E  I  I  L  D  M  L  F  K  K  E  M  *  I  N  S  L  *  F  *  N  V  R  Y  V  N  N  A  L  R  C  Q  Q  P  N  M  Y  Y  K  I  S  S  I  F  V  Y  Y  </second_frame>
            <third_frame>   L  R  K  E  L  K  V  G  K  A  K  L  S  C  F  A  S  L  Q  W  Y  V  W  L  *  Y  C  T  H  L  L  G  L  S  E  E  L  L  L  L  G  S  G  K  N  A  S  S  R  F  Y  K  V  C  V  H  A  I  L  S  E  P  P  L  V  R  L  Y  *  I  C  Y  L  K  K  K  C  K  *  I  L  Y  S  F  K  M  F  G  M  *  T  M  P  Y  V  V  N  N  Q  I  C  I  I  K  F  H  R  F  S  C  T  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0309F18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17617" PGL_stop="9324"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17617" e_stop="16856"/>
            <exon e_start="15938" e_stop="15657"/>
            <exon e_start="15579" e_stop="15484"/>
            <exon e_start="14031" e_stop="13853"/>
            <exon e_start="13600" e_stop="13519"/>
            <exon e_start="12670" e_stop="12546"/>
            <exon e_start="11563" e_stop="11471"/>
            <exon e_start="10147" e_stop="9994"/>
            <exon e_start="9601" e_stop="9324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.921" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.713" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="17617" e_stop="16856" e_length="762"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.921">
            <gDNA_intron_boundary i_start="16855" i_stop="15939" i_length="917"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15938" e_stop="15657" e_length="282"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="15656" i_stop="15580" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15579" e_stop="15484" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15483" i_stop="14032" i_length="1452"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14031" e_stop="13853" e_length="179"/>
          </exon>
          <intron i_serial="4" don_prob="0.776" acc_prob="0.986">
            <gDNA_intron_boundary i_start="13852" i_stop="13601" i_length="252"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13600" e_stop="13519" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13518" i_stop="12671" i_length="848"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12670" e_stop="12546" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.951" acc_prob="0.981">
            <gDNA_intron_boundary i_start="12545" i_stop="11564" i_length="982"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="11563" e_stop="11471" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.713">
            <gDNA_intron_boundary i_start="11470" i_stop="10148" i_length="1323"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="10147" e_stop="9994" e_length="154"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="9993" i_stop="9602" i_length="392"/>
          </intron>
          <exon e_serial="9" e_score="0.982">
            <gDNA_exon_boundary e_start="9601" e_stop="9324" e_length="278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17617" stop="16856"/>
              <exon start="15938" stop="15657"/>
              <exon start="15579" stop="15484"/>
              <exon start="14031" stop="13853"/>
              <exon start="13600" stop="13519"/>
              <exon start="12670" stop="12546"/>
              <exon start="11563" stop="11471"/>
              <exon start="10147" stop="9994"/>
              <exon start="9601" stop="9324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318425" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAAATTCAAGTCTTCTCTCGAAGAAGCTTTAAGTAATATATTCCAGGAAGAGGGGTTTTTCAATGAAACCCTGAATAGTCTTTCTCATGTTCATATAATTGACACTGATGGTGCTTCTTCTAAAGGAAATCATGGCACCTCCTCATTTCAGAGTGTGGCTGACAAATCCATTACTCGATTTTATTTTGAATTTTCTTCATCATGGCCCCGTACTCCCAATTGGATATCTTTGTTTGGAAATGACACATTCTACTCAAGCTTTGCCCGAATTTTTAAACGTTTAGTACAGGAATGTGGTGCTCCTGTTATACTGGCACTAAAAGATGCATTAGCAGACTACATAAATGCAAAGGAGAGGACAAAGCAGTGTGTTGCTGCTGAGGCAGTGGCAGGTGTGCTACATTCTGATGTTTCCGGTGTTTCAGAAGCATGGGATAGCTGGTTGATGACCCATTTTCAGAGTATTATTCAAGCACCAACAGTTGAGTCCATACCTGAGTGGGCTGCTTGTATTCGTTATGCAGTTACTGGAAAAGGAAAACATGGAACAAAAATTCCACTCTTGAGACAAAAGGTCATGGACTGTTTAATGAACCCCTTGCCTGAAACAGTTAGTACTACTGTAGTTGCCAAGCGATACATGTTTCTTTCAGCTGCACTAATAGAAGTTTCCCCACCAAAAATGCCAGTTACTGAACTAGCGCTTCACTATAAGCTTCTTGAAGAATTGCTTGGCAGTATGAGCCATTCATCTCCACAA : GTGAGGGAATCCATTGGTGTCACCCTCTCTGTTTTATGCTCAAACATTCGGCTCCAGGTGTCCTGCAATCAAGCTCATCCACATGAAGTAGGAACAAGTAATGTGAACAGGAAAGTTGAAGCAGGGAATTGGGATCATTATCTAGTAGAACGTGCATCTGAGCTTGTGGTGAAGATCCAAAGTTTTAGCCAGTCAGACACTCTGGATGTGCAAACGGACATGATTTCTGACAATGGAGTATTAACCGAACAGTCTCATGATGATGTTAAATGGATGGAGACG : CTATTTCATTTCATTATCTCATCTCTAAAGTCAGGAAGATCCTCGGTTCTGCTGGATGTTGTTGTTGGTCTTTTGTATCCTGTAATATCTCTACAG : GAGACGTCAAATAAGGATTTGTCGACACTGGCCAAAATAGCTTTTGAATTGCTAAAGTGGAGAGTTTATTCAGAGTCCCATTTAAGGAAAGTTGTGCTCACCATTCTTTCTATAGCCAATGATACCAATTGGCGTACAAGATCTACGACTCTGACCTATTTACGGAGTTTCATGTATAG : GCACACTTTCGTCCTCTCTAAGGTGGACAAACAACAAATTTGGCAAACTGTCGAGAAGCTACTCGCAGATAATCAAGTTGAG : GTAAGGGAGCATGCGGCAGCAGTCTTGGCTGGCCTAATGAAGGGCGGAGATGAAGATTTAGCTCAGGATTTCCGTCATAGAGCTTATACAGAAGCAAGTATCATTCAGAAGAAGAGGAAACAAAG : AAGCATGCGTTCTGGATTCTCTGTAGCATCCCTACATGGAAAGATACTTGCTTTGGCTGCTTGCGTGCTATCAGTTCCTTATGATATTCCCAG : TTGGTTACCAGAACAGGTTACACTATTGGCTCAATTTGTTTCTGAATCATCACCTGTAAAATCTACCGTGACAAAAGCTGTGGCAGAGTTTCGACGCACTCATGCGGACACATGGAATGTTCAGAAAGATTCCTTCACTGAAGAACAACTTGAG : GTCCTGGCTGATACATCATCATCCTCATCATACTTTGCTTGACATTCATGGTGTGCCTTACATGAGAGATAGAATTATACCATATCATATATCTCATATATTGTAAGTGGGAAGTCTCCAAGTCTAAAGTTGAACTACAAAAATGCTCATACAATTTTTTATTAAAAATTTTGTTCTACACTAAAAATTAAAAGAAAAAACTTTTAGACAGAAAATCATTCATTTTCTACATTGAATTTGAACGTAGAAAATTGTGTTGTCATCTTCCCACAATTGTT</gDNA_template>
            <first_frame> D  K  F  K  S  S  L  E  E  A  L  S  N  I  F  Q  E  E  G  F  F  N  E  T  L  N  S  L  S  H  V  H  I  I  D  T  D  G  A  S  S  K  G  N  H  G  T  S  S  F  Q  S  V  A  D  K  S  I  T  R  F  Y  F  E  F  S  S  S  W  P  R  T  P  N  W  I  S  L  F  G  N  D  T  F  Y  S  S  F  A  R  I  F  K  R  L  V  Q  E  C  G  A  P  V  I  L  A  L  K  D  A  L  A  D  Y  I  N  A  K  E  R  T  K  Q  C  V  A  A  E  A  V  A  G  V  L  H  S  D  V  S  G  V  S  E  A  W  D  S  W  L  M  T  H  F  Q  S  I  I  Q  A  P  T  V  E  S  I  P  E  W  A  A  C  I  R  Y  A  V  T  G  K  G  K  H  G  T  K  I  P  L  L  R  Q  K  V  M  D  C  L  M  N  P  L  P  E  T  V  S  T  T  V  V  A  K  R  Y  M  F  L  S  A  A  L  I  E  V  S  P  P  K  M  P  V  T  E  L  A  L  H  Y  K  L  L  E  E  L  L  G  S  M  S  H  S  S  P  Q  :  V  R  E  S  I  G  V  T  L  S  V  L  C  S  N  I  R  L  Q  V  S  C  N  Q  A  H  P  H  E  V  G  T  S  N  V  N  R  K  V  E  A  G  N  W  D  H  Y  L  V  E  R  A  S  E  L  V  V  K  I  Q  S  F  S  Q  S  D  T  L  D  V  Q  T  D  M  I  S  D  N  G  V  L  T  E  Q  S  H  D  D  V  K  W  M  E  T  :  L  F  H  F  I  I  S  S  L  K  S  G  R  S  S  V  L  L  D  V  V  V  G  L  L  Y  P  V  I  S  L  Q  :  E  T  S  N  K  D  L  S  T  L  A  K  I  A  F  E  L  L  K  W  R  V  Y  S  E  S  H  L  R  K  V  V  L  T  I  L  S  I  A  N  D  T  N  W  R  T  R  S  T  T  L  T  Y  L  R  S  F  M  Y  R :   H  T  F  V  L  S  K  V  D  K  Q  Q  I  W  Q  T  V  E  K  L  L  A  D  N  Q  V  E  :  V  R  E  H  A  A  A  V  L  A  G  L  M  K  G  G  D  E  D  L  A  Q  D  F  R  H  R  A  Y  T  E  A  S  I  I  Q  K  K  R  K  Q  R :   S  M  R  S  G  F  S  V  A  S  L  H  G  K  I  L  A  L  A  A  C  V  L  S  V  P  Y  D  I  P  S :   W  L  P  E  Q  V  T  L  L  A  Q  F  V  S  E  S  S  P  V  K  S  T  V  T  K  A  V  A  E  F  R  R  T  H  A  D  T  W  N  V  Q  K  D  S  F  T  E  E  Q  L  E  :  V  L  A  D  T  S  S  S  S  S  Y  F  A  *  H  S  W  C  A  L  H  E  R  *  N  Y  T  I  S  Y  I  S  Y  I  V  S  G  K  S  P  S  L  K  L  N  Y  K  N  A  H  T  I  F  Y  *  K  F  C  S  T  L  K  I  K  R  K  N  F  *  T  E  N  H  S  F  S  T  L  N  L  N  V  E  N  C  V  V  I  F  P  Q  L   </first_frame>
            <second_frame>  I  N  S  S  L  L  S  K  K  L  *  V  I  Y  S  R  K  R  G  F  S  M  K  P  *  I  V  F  L  M  F  I  *  L  T  L  M  V  L  L  L  K  E  I  M  A  P  P  H  F  R  V  W  L  T  N  P  L  L  D  F  I  L  N  F  L  H  H  G  P  V  L  P  I  G  Y  L  C  L  E  M  T  H  S  T  Q  A  L  P  E  F  L  N  V  *  Y  R  N  V  V  L  L  L  Y  W  H  *  K  M  H  *  Q  T  T  *  M  Q  R  R  G  Q  S  S  V  L  L  L  R  Q  W  Q  V  C  Y  I  L  M  F  P  V  F  Q  K  H  G  I  A  G  *  *  P  I  F  R  V  L  F  K  H  Q  Q  L  S  P  Y  L  S  G  L  L  V  F  V  M  Q  L  L  E  K  E  N  M  E  Q  K  F  H  S  *  D  K  R  S  W  T  V  *  *  T  P  C  L  K  Q  L  V  L  L  *  L  P  S  D  T  C  F  F  Q  L  H  *  *  K  F  P  H  Q  K  C  Q  L  L  N  *  R  F  T  I  S  F  L  K  N  C  L  A  V  *  A  I  H  L  H  K :   *  G  N  P  L  V  S  P  S  L  F  Y  A  Q  T  F  G  S  R  C  P  A  I  K  L  I  H  M  K  *  E  Q  V  M  *  T  G  K  L  K  Q  G  I  G  I  I  I  *  *  N  V  H  L  S  L  W  *  R  S  K  V  L  A  S  Q  T  L  W  M  C  K  R  T  *  F  L  T  M  E  Y  *  P  N  S  L  M  M  M  L  N  G  W  R  R :   Y  F  I  S  L  S  H  L  *  S  Q  E  D  P  R  F  C  W  M  L  L  L  V  F  C  I  L  *  Y  L  Y  R :   R  R  Q  I  R  I  C  R  H  W  P  K  *  L  L  N  C  *  S  G  E  F  I  Q  S  P  I  *  G  K  L  C  S  P  F  F  L  *  P  M  I  P  I  G  V  Q  D  L  R  L  *  P  I  Y  G  V  S  C  I   : G  T  L  S  S  S  L  R  W  T  N  N  K  F  G  K  L  S  R  S  Y  S  Q  I  I  K  L  R :   *  G  S  M  R  Q  Q  S  W  L  A  *  *  R  A  E  M  K  I  *  L  R  I  S  V  I  E  L  I  Q  K  Q  V  S  F  R  R  R  G  N  K   : E  A  C  V  L  D  S  L  *  H  P  Y  M  E  R  Y  L  L  W  L  L  A  C  Y  Q  F  L  M  I  F  P   : V  G  Y  Q  N  R  L  H  Y  W  L  N  L  F  L  N  H  H  L  *  N  L  P  *  Q  K  L  W  Q  S  F  D  A  L  M  R  T  H  G  M  F  R  K  I  P  S  L  K  N  N  L  R :   S  W  L  I  H  H  H  P  H  H  T  L  L  D  I  H  G  V  P  Y  M  R  D  R  I  I  P  Y  H  I  S  H  I  L  *  V  G  S  L  Q  V  *  S  *  T  T  K  M  L  I  Q  F  F  I  K  N  F  V  L  H  *  K  L  K  E  K  T  F  R  Q  K  I  I  H  F  L  H  *  I  *  T  *  K  I  V  L  S  S  S  H  N  C  </second_frame>
            <third_frame>   *  I  Q  V  F  S  R  R  S  F  K  *  Y  I  P  G  R  G  V  F  Q  *  N  P  E  *  S  F  S  C  S  Y  N  *  H  *  W  C  F  F  *  R  K  S  W  H  L  L  I  S  E  C  G  *  Q  I  H  Y  S  I  L  F  *  I  F  F  I  M  A  P  Y  S  Q  L  D  I  F  V  W  K  *  H  I  L  L  K  L  C  P  N  F  *  T  F  S  T  G  M  W  C  S  C  Y  T  G  T  K  R  C  I  S  R  L  H  K  C  K  G  E  D  K  A  V  C  C  C  *  G  S  G  R  C  A  T  F  *  C  F  R  C  F  R  S  M  G  *  L  V  D  D  P  F  S  E  Y  Y  S  S  T  N  S  *  V  H  T  *  V  G  C  L  Y  S  L  C  S  Y  W  K  R  K  T  W  N  K  N  S  T  L  E  T  K  G  H  G  L  F  N  E  P  L  A  *  N  S  *  Y  Y  C  S  C  Q  A  I  H  V  S  F  S  C  T  N  R  S  F  P  T  K  N  A  S  Y  *  T  S  A  S  L  *  A  S  *  R  I  A  W  Q  Y  E  P  F  I  S  T   : S  E  G  I  H  W  C  H  P  L  C  F  M  L  K  H  S  A  P  G  V  L  Q  S  S  S  S  T  *  S  R  N  K  *  C  E  Q  E  S  *  S  R  E  L  G  S  L  S  S  R  T  C  I  *  A  C  G  E  D  P  K  F  *  P  V  R  H  S  G  C  A  N  G  H  D  F  *  Q  W  S  I  N  R  T  V  S  *  *  C  *  M  D  G  D   : A  I  S  F  H  Y  L  I  S  K  V  R  K  I  L  G  S  A  G  C  C  C  W  S  F  V  S  C  N  I  S  T   : G  D  V  K  *  G  F  V  D  T  G  Q  N  S  F  *  I  A  K  V  E  S  L  F  R  V  P  F  K  E  S  C  A  H  H  S  F  Y  S  Q  *  Y  Q  L  A  Y  K  I  Y  D  S  D  L  F  T  E  F  H  V  *  :  A  H  F  R  P  L  *  G  G  Q  T  T  N  L  A  N  C  R  E  A  T  R  R  *  S  S  *   : G  K  G  A  C  G  S  S  L  G  W  P  N  E  G  R  R  *  R  F  S  S  G  F  P  S  *  S  L  Y  R  S  K  Y  H  S  E  E  E  E  T  K  :  K  H  A  F  W  I  L  C  S  I  P  T  W  K  D  T  C  F  G  C  L  R  A  I  S  S  L  *  Y  S  Q  :  L  V  T  R  T  G  Y  T  I  G  S  I  C  F  *  I  I  T  C  K  I  Y  R  D  K  S  C  G  R  V  S  T  H  S  C  G  H  M  E  C  S  E  R  F  L  H  *  R  T  T  *   : G  P  G  *  Y  I  I  I  L  I  I  L  C  L  T  F  M  V  C  L  T  *  E  I  E  L  Y  H  I  I  Y  L  I  Y  C  K  W  E  V  S  K  S  K  V  E  L  Q  K  C  S  Y  N  F  L  L  K  I  L  F  Y  T  K  N  *  K  K  K  L  L  D  R  K  S  F  I  F  Y  I  E  F  E  R  R  K  L  C  C  H  L  P  T  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17617" stop="16856"/>
                    <exon start="15938" stop="15657"/>
                    <exon start="15579" stop="15484"/>
                    <exon start="14031" stop="13853"/>
                    <exon start="13600" stop="13519"/>
                    <exon start="12670" stop="12546"/>
                    <exon start="11563" stop="11471"/>
                    <exon start="10147" stop="9994"/>
                    <exon start="9601" stop="9560"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1812</number_coding_nucleotides>
                  <number_encoded_amino_acids>604</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKFKSSLEEALSNIFQEEGFFNETLNSLSHVHIIDTDGASSKGNHGTSSFQSVADKSITRFYFEFSSSWPRTPNWISLFGNDTFYSSFARIFKRLVQECGAPVILALKDALADYINAKERTKQCVAAEAVAGVLHSDVSGVSEAWDSWLMTHFQSIIQAPTVESIPEWAACIRYAVTGKGKHGTKIPLLRQKVMDCLMNPLPETVSTTVVAKRYMFLSAALIEVSPPKMPVTELALHYKLLEELLGSMSHSSPQVRESIGVTLSVLCSNIRLQVSCNQAHPHEVGTSNVNRKVEAGNWDHYLVERASELVVKIQSFSQSDTLDVQTDMISDNGVLTEQSHDDVKWMETLFHFIISSLKSGRSSVLLDVVVGLLYPVISLQETSNKDLSTLAKIAFELLKWRVYSESHLRKVVLTILSIANDTNWRTRSTTLTYLRSFMYRHTFVLSKVDKQQIWQTVEKLLADNQVEVREHAAAVLAGLMKGGDEDLAQDFRHRAYTEASIIQKKRKQRSMRSGFSVASLHGKILALAACVLSVPYDIPSWLPEQVTLLAQFVSESSPVKSTVTKAVAEFRRTHADTWNVQKDSFTEEQLEVLADTSSSSSYFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15938" e_stop="15657"/>
            <exon e_start="15579" e_stop="15357"/>
            <exon e_start="14031" e_stop="13853"/>
            <exon e_start="13600" e_stop="13519"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.590" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.986" e_score="0.989"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15938" e_stop="15657" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="15656" i_stop="15580" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15579" e_stop="15357" e_length="223"/>
          </exon>
          <intron i_serial="2" don_prob="0.590" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15356" i_stop="14032" i_length="1325"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="14031" e_stop="13853" e_length="179"/>
          </exon>
          <intron i_serial="3" don_prob="0.776" acc_prob="0.986">
            <gDNA_intron_boundary i_start="13852" i_stop="13601" i_length="252"/>
          </intron>
          <exon e_serial="4" e_score="0.963">
            <gDNA_exon_boundary e_start="13600" e_stop="13519" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15938" stop="15657"/>
              <exon start="15579" stop="15357"/>
              <exon start="14031" stop="13853"/>
              <exon start="13600" stop="13519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318426" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAGGGAATCCATTGGTGTCACCCTCTCTGTTTTATGCTCAAACATTCGGCTCCAGGTGTCCTGCAATCAAGCTCATCCACATGAAGTAGGAACAAGTAATGTGAACAGGAAAGTTGAAGCAGGGAATTGGGATCATTATCTAGTAGAACGTGCATCTGAGCTTGTGGTGAAGATCCAAAGTTTTAGCCAGTCAGACACTCTGGATGTGCAAACGGACATGATTTCTGACAATGGAGTATTAACCGAACAGTCTCATGATGATGTTAAATGGATGGAGACG : CTATTTCATTTCATTATCTCATCTCTAAAGTCAGGAAGATCCTCGGTTCTGCTGGATGTTGTTGTTGGTCTTTTGTATCCTGTAATATCTCTACAGGTTAGTTGCAACATCACATCATTCCCGTTGCTTGTCTTTTCAGTTGTTTTGACATTTTGAAGGGATGAAATTACTGTCTGAAGAACTTGGCATATACACACTTTCCCTCCATTTACGGATGAAAATG : GAGACGTCAAATAAGGATTTGTCGACACTGGCCAAAATAGCTTTTGAATTGCTAAAGTGGAGAGTTTATTCAGAGTCCCATTTAAGGAAAGTTGTGCTCACCATTCTTTCTATAGCCAATGATACCAATTGGCGTACAAGATCTACGACTCTGACCTATTTACGGAGTTTCATGTATAG : GCACACTTTCGTCCTCTCTAAGGTGGACAAACAACAAATTTGGCAAACTGTCGAGAAGCTACTCGCAGATAATCAAGTTGAG</gDNA_template>
            <first_frame> V  R  E  S  I  G  V  T  L  S  V  L  C  S  N  I  R  L  Q  V  S  C  N  Q  A  H  P  H  E  V  G  T  S  N  V  N  R  K  V  E  A  G  N  W  D  H  Y  L  V  E  R  A  S  E  L  V  V  K  I  Q  S  F  S  Q  S  D  T  L  D  V  Q  T  D  M  I  S  D  N  G  V  L  T  E  Q  S  H  D  D  V  K  W  M  E  T  :  L  F  H  F  I  I  S  S  L  K  S  G  R  S  S  V  L  L  D  V  V  V  G  L  L  Y  P  V  I  S  L  Q  V  S  C  N  I  T  S  F  P  L  L  V  F  S  V  V  L  T  F  *  R  D  E  I  T  V  *  R  T  W  H  I  H  T  F  P  P  F  T  D  E  N   : G  D  V  K  *  G  F  V  D  T  G  Q  N  S  F  *  I  A  K  V  E  S  L  F  R  V  P  F  K  E  S  C  A  H  H  S  F  Y  S  Q  *  Y  Q  L  A  Y  K  I  Y  D  S  D  L  F  T  E  F  H  V  *  :  A  H  F  R  P  L  *  G  G  Q  T  T  N  L  A  N  C  R  E  A  T  R  R  *  S  S  *  </first_frame>
            <second_frame>  *  G  N  P  L  V  S  P  S  L  F  Y  A  Q  T  F  G  S  R  C  P  A  I  K  L  I  H  M  K  *  E  Q  V  M  *  T  G  K  L  K  Q  G  I  G  I  I  I  *  *  N  V  H  L  S  L  W  *  R  S  K  V  L  A  S  Q  T  L  W  M  C  K  R  T  *  F  L  T  M  E  Y  *  P  N  S  L  M  M  M  L  N  G  W  R  R :   Y  F  I  S  L  S  H  L  *  S  Q  E  D  P  R  F  C  W  M  L  L  L  V  F  C  I  L  *  Y  L  Y  R  L  V  A  T  S  H  H  S  R  C  L  S  F  Q  L  F  *  H  F  E  G  M  K  L  L  S  E  E  L  G  I  Y  T  L  S  L  H  L  R  M  K  M  :  E  T  S  N  K  D  L  S  T  L  A  K  I  A  F  E  L  L  K  W  R  V  Y  S  E  S  H  L  R  K  V  V  L  T  I  L  S  I  A  N  D  T  N  W  R  T  R  S  T  T  L  T  Y  L  R  S  F  M  Y  R :   H  T  F  V  L  S  K  V  D  K  Q  Q  I  W  Q  T  V  E  K  L  L  A  D  N  Q  V  E </second_frame>
            <third_frame>   E  G  I  H  W  C  H  P  L  C  F  M  L  K  H  S  A  P  G  V  L  Q  S  S  S  S  T  *  S  R  N  K  *  C  E  Q  E  S  *  S  R  E  L  G  S  L  S  S  R  T  C  I  *  A  C  G  E  D  P  K  F  *  P  V  R  H  S  G  C  A  N  G  H  D  F  *  Q  W  S  I  N  R  T  V  S  *  *  C  *  M  D  G  D   : A  I  S  F  H  Y  L  I  S  K  V  R  K  I  L  G  S  A  G  C  C  C  W  S  F  V  S  C  N  I  S  T  G  *  L  Q  H  H  I  I  P  V  A  C  L  F  S  C  F  D  I  L  K  G  *  N  Y  C  L  K  N  L  A  Y  T  H  F  P  S  I  Y  G  *  K  W :   R  R  Q  I  R  I  C  R  H  W  P  K  *  L  L  N  C  *  S  G  E  F  I  Q  S  P  I  *  G  K  L  C  S  P  F  F  L  *  P  M  I  P  I  G  V  Q  D  L  R  L  *  P  I  Y  G  V  S  C  I   : G  T  L  S  S  S  L  R  W  T  N  N  K  F  G  K  L  S  R  S  Y  S  Q  I  I  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15938" stop="15657"/>
                    <exon start="15579" stop="15424"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRESIGVTLSVLCSNIRLQVSCNQAHPHEVGTSNVNRKVEAGNWDHYLVERASELVVKIQSFSQSDTLDVQTDMISDNGVLTEQSHDDVKWMETLFHFIISSLKSGRSSVLLDVVVGLLYPVISLQVSCNITSFPLLVFSVVLTF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15431" stop="15357"/>
                    <exon start="14031" stop="13853"/>
                    <exon start="13600" stop="13519"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFEGMKLLSEELGIYTLSLHLRMKMETSNKDLSTLAKIAFELLKWRVYSESHLRKVVLTILSIANDTNWRTRSTTLTYLRSFMYRHTFVLSKVDKQQIWQTVEKLLADNQVE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="20538" PGL_stop="19250"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20538" e_stop="20527"/>
            <exon e_start="20439" e_stop="20269"/>
            <exon e_start="19793" e_stop="19625"/>
            <exon e_start="19547" e_stop="19504"/>
            <exon e_start="19410" e_stop="19368"/>
            <exon e_start="19279" e_stop="19250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="0.703" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.820" e_score="0.988"/>
          <exon-intron don_prob="0.753" acc_prob="0.000" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.583" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20538" e_stop="20527" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="0.703">
            <gDNA_intron_boundary i_start="20526" i_stop="20440" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="20439" e_stop="20269" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.820">
            <gDNA_intron_boundary i_start="20268" i_stop="19794" i_length="475"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="19793" e_stop="19625" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.753" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19624" i_stop="19548" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19547" e_stop="19504" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19503" i_stop="19411" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19410" e_stop="19368" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.583">
            <gDNA_intron_boundary i_start="19367" i_stop="19280" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19279" e_stop="19250" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20538" stop="20527"/>
              <exon start="20439" stop="20269"/>
              <exon start="19793" stop="19625"/>
              <exon start="19547" stop="19504"/>
              <exon start="19410" stop="19368"/>
              <exon start="19279" stop="19250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346261" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGAAAAAAAG : GCCTAGTTGGGCACTTATTGACAAAGCATGCATGCATAGTACTTGGAGAGCCTCACAATCATCATATCATATCTTCCGGCTGAGTGCAAATGTATCTCCTTCAGATCATATCATTCATTTGACGGATGATCTTCTTAATCTCTCCTTGCATAGTTATGAAACAGTCCGTGG : ACTTGCTGGAAAATCTCTCTTGAAGATGATGAAGAGATGGCCCTCTACAATCTCAAAATGTGTGCTCAGTCTGAGTCAGAACTTGAAAAATTCTAGCTCACCAGAATGCGCAGTCTTAGGTTCCTGTGCAGTCCTTGCAACGCAAACTGTTCTTAAATGTTTAACAACG : GATTTGAAGGCACTTTCTTCCTTCCTGCTTGGAATTCTGTCAAG : CTCTCATCATGAAACACTAAAAGCTCAGAAAGCCATCAATGAG : CTTTTCATTAAGTACAACATTCATTTTTCT</gDNA_template>
            <first_frame> R  E  K  K  :  A  *  L  G  T  Y  *  Q  S  M  H  A  *  Y  L  E  S  L  T  I  I  I  S  Y  L  P  A  E  C  K  C  I  S  F  R  S  Y  H  S  F  D  G  *  S  S  *  S  L  L  A  *  L  *  N  S  P  W  :  T  C  W  K  I  S  L  E  D  D  E  E  M  A  L  Y  N  L  K  M  C  A  Q  S  E  S  E  L  E  K  F  *  L  T  R  M  R  S  L  R  F  L  C  S  P  C  N  A  N  C  S  *  M  F  N  N   : G  F  E  G  T  F  F  L  P  A  W  N  S  V  K  :  L  S  S  *  N  T  K  S  S  E  S  H  Q  *   : A  F  H  *  V  Q  H  S  F  F  </first_frame>
            <second_frame>  G  K  K  R :   P  S  W  A  L  I  D  K  A  C  M  H  S  T  W  R  A  S  Q  S  S  Y  H  I  F  R  L  S  A  N  V  S  P  S  D  H  I  I  H  L  T  D  D  L  L  N  L  S  L  H  S  Y  E  T  V  R  G :   L  A  G  K  S  L  L  K  M  M  K  R  W  P  S  T  I  S  K  C  V  L  S  L  S  Q  N  L  K  N  S  S  S  P  E  C  A  V  L  G  S  C  A  V  L  A  T  Q  T  V  L  K  C  L  T  T  :  D  L  K  A  L  S  S  F  L  L  G  I  L  S  S :   S  H  H  E  T  L  K  A  Q  K  A  I  N  E  :  L  F  I  K  Y  N  I  H  F  S </second_frame>
            <third_frame>   G  K  K   : G  L  V  G  H  L  L  T  K  H  A  C  I  V  L  G  E  P  H  N  H  H  I  I  S  S  G  *  V  Q  M  Y  L  L  Q  I  I  S  F  I  *  R  M  I  F  L  I  S  P  C  I  V  M  K  Q  S  V   : D  L  L  E  N  L  S  *  R  *  *  R  D  G  P  L  Q  S  Q  N  V  C  S  V  *  V  R  T  *  K  I  L  A  H  Q  N  A  Q  S  *  V  P  V  Q  S  L  Q  R  K  L  F  L  N  V  *  Q  R :   I  *  R  H  F  L  P  S  C  L  E  F  C  Q   : A  L  I  M  K  H  *  K  L  R  K  P  S  M  S :   F  S  L  S  T  T  F  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20537" stop="20527"/>
                    <exon start="20439" stop="20269"/>
                    <exon start="19793" stop="19625"/>
                    <exon start="19547" stop="19504"/>
                    <exon start="19410" stop="19368"/>
                    <exon start="19279" stop="19250"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKKRPSWALIDKACMHSTWRASQSSYHIFRLSANVSPSDHIIHLTDDLLNLSLHSYETVRGLAGKSLLKMMKRWPSTISKCVLSLSQNLKNSSSPECAVLGSCAVLATQTVLKCLTTDLKALSSFLLGILSSSHHETLKAQKAINELFIKYNIHFS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="25756" PGL_stop="24289"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25756" e_stop="25748"/>
            <exon e_start="25557" e_stop="25456"/>
            <exon e_start="25369" e_stop="25204"/>
            <exon e_start="24983" e_stop="24867"/>
            <exon e_start="24784" e_stop="24717"/>
            <exon e_start="24627" e_stop="24526"/>
            <exon e_start="24440" e_stop="24289"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.758" acc_prob="0.647" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.967" e_score="0.990"/>
          <exon-intron don_prob="0.846" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.168" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25756" e_stop="25748" e_length="9"/>
          </exon>
          <intron i_serial="1" don_prob="0.758" acc_prob="0.647">
            <gDNA_intron_boundary i_start="25747" i_stop="25558" i_length="190"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="25557" e_stop="25456" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.967">
            <gDNA_intron_boundary i_start="25455" i_stop="25370" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25369" e_stop="25204" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.846" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25203" i_stop="24984" i_length="220"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24983" e_stop="24867" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.168" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24866" i_stop="24785" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24784" e_stop="24717" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.994">
            <gDNA_intron_boundary i_start="24716" i_stop="24628" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24627" e_stop="24526" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.972" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24525" i_stop="24441" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="24440" e_stop="24289" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25756" stop="25748"/>
              <exon start="25557" stop="25456"/>
              <exon start="25369" stop="25204"/>
              <exon start="24983" stop="24867"/>
              <exon start="24784" stop="24717"/>
              <exon start="24627" stop="24526"/>
              <exon start="24440" stop="24289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344697" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGTTCAG : ATCTTTGCTTGAAAATCCATGGCACAATTCATCCTTTGAGGGTGCTGGTTTTGTAAGACTGTTCCTTCCTACCAATAGAGACAACCAGGATTTCTTTTCTCA : CACTTGGATTGTTACGTGTTTAGTCCACTGGGATTCCGTACCAAATTCCCAGTTTTGGAACAGCCAGTGGGCCTCCGTTACAGCTCGTGTTTTAAAGAACTATAGCTTCATTGACTGGGAACATTTCTTACCAGATATTTTCAATAAATATTTGAATATGTTCGAG : GTTCCAGTAGCAAATGGCAGTGGGTCAAACCCATTCTCTGTGGATGTTCCCAGAAACACAAGATTCTTGTTCTCAAATAGAACAATCACTCCATCAAAAGCCATTGCTAAATCTATA : GTTTATCTACTAAAACCTGGTGGTTCTGCACAAGAACATTTGGAGAAATTGGTCAACCTCTTGGAACA : GTATTACCATCCTTCTAATGGTGGTCGCTGGACTTATTCCTTGGAGCGATTCTTGTTCCACTTGGTAAATATATTTCAGAAACGCTTGCAAAATGAGCAACA : GAGAAAAGATGACGGCGAGCAGTCTGAAATCTTCCTAGGGCAGTCAGAGAGGGTTTCTTTTGTGCATTCTATTCTCAAGCTAATTGATCGTGGACAGTATAGCAAAAATGAACATCTTTCTGAAACCGTTGCAGCTGCCACTTCTATCCTTT</gDNA_template>
            <first_frame> R  V  Q  :  I  F  A  *  K  S  M  A  Q  F  I  L  *  G  C  W  F  C  K  T  V  P  S  Y  Q  *  R  Q  P  G  F  L  F  S  :  H  L  D  C  Y  V  F  S  P  L  G  F  R  T  K  F  P  V  L  E  Q  P  V  G  L  R  Y  S  S  C  F  K  E  L  *  L  H  *  L  G  T  F  L  T  R  Y  F  Q  *  I  F  E  Y  V  R   : G  S  S  S  K  W  Q  W  V  K  P  I  L  C  G  C  S  Q  K  H  K  I  L  V  L  K  *  N  N  H  S  I  K  S  H  C  *  I  Y   : S  L  S  T  K  T  W  W  F  C  T  R  T  F  G  E  I  G  Q  P  L  G  T  :  V  L  P  S  F  *  W  W  S  L  D  L  F  L  G  A  I  L  V  P  L  G  K  Y  I  S  E  T  L  A  K  *  A  T  :  E  K  R  *  R  R  A  V  *  N  L  P  R  A  V  R  E  G  F  F  C  A  F  Y  S  Q  A  N  *  S  W  T  V  *  Q  K  *  T  S  F  *  N  R  C  S  C  H  F  Y  P   </first_frame>
            <second_frame>  E  F  R :   S  L  L  E  N  P  W  H  N  S  S  F  E  G  A  G  F  V  R  L  F  L  P  T  N  R  D  N  Q  D  F  F  S  H :   T  W  I  V  T  C  L  V  H  W  D  S  V  P  N  S  Q  F  W  N  S  Q  W  A  S  V  T  A  R  V  L  K  N  Y  S  F  I  D  W  E  H  F  L  P  D  I  F  N  K  Y  L  N  M  F  E  :  V  P  V  A  N  G  S  G  S  N  P  F  S  V  D  V  P  R  N  T  R  F  L  F  S  N  R  T  I  T  P  S  K  A  I  A  K  S  I  :  V  Y  L  L  K  P  G  G  S  A  Q  E  H  L  E  K  L  V  N  L  L  E  Q :   Y  Y  H  P  S  N  G  G  R  W  T  Y  S  L  E  R  F  L  F  H  L  V  N  I  F  Q  K  R  L  Q  N  E  Q  Q :   R  K  D  D  G  E  Q  S  E  I  F  L  G  Q  S  E  R  V  S  F  V  H  S  I  L  K  L  I  D  R  G  Q  Y  S  K  N  E  H  L  S  E  T  V  A  A  A  T  S  I  L  </second_frame>
            <third_frame>   S  S   : D  L  C  L  K  I  H  G  T  I  H  P  L  R  V  L  V  L  *  D  C  S  F  L  P  I  E  T  T  R  I  S  F  L   : T  L  G  L  L  R  V  *  S  T  G  I  P  Y  Q  I  P  S  F  G  T  A  S  G  P  P  L  Q  L  V  F  *  R  T  I  A  S  L  T  G  N  I  S  Y  Q  I  F  S  I  N  I  *  I  C  S  R :   F  Q  *  Q  M  A  V  G  Q  T  H  S  L  W  M  F  P  E  T  Q  D  S  C  S  Q  I  E  Q  S  L  H  Q  K  P  L  L  N  L  * :   F  I  Y  *  N  L  V  V  L  H  K  N  I  W  R  N  W  S  T  S  W  N   : S  I  T  I  L  L  M  V  V  A  G  L  I  P  W  S  D  S  C  S  T  W  *  I  Y  F  R  N  A  C  K  M  S  N   : R  E  K  M  T  A  S  S  L  K  S  S  *  G  S  Q  R  G  F  L  L  C  I  L  F  S  S  *  L  I  V  D  S  I  A  K  M  N  I  F  L  K  P  L  Q  L  P  L  L  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25755" stop="25748"/>
                    <exon start="25557" stop="25456"/>
                    <exon start="25369" stop="25204"/>
                    <exon start="24983" stop="24867"/>
                    <exon start="24784" stop="24717"/>
                    <exon start="24627" stop="24526"/>
                    <exon start="24440" stop="24290"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFRSLLENPWHNSSFEGAGFVRLFLPTNRDNQDFFSHTWIVTCLVHWDSVPNSQFWNSQWASVTARVLKNYSFIDWEHFLPDIFNKYLNMFEVPVANGSGSNPFSVDVPRNTRFLFSNRTITPSKAIAKSIVYLLKPGGSAQEHLEKLVNLLEQYYHPSNGGRWTYSLERFLFHLVNIFQKRLQNEQQRKDDGEQSEIFLGQSERVSFVHSILKLIDRGQYSKNEHLSETVAAATSIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="38552" PGL_stop="32902"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38552" e_stop="38477"/>
            <exon e_start="38335" e_stop="38240"/>
            <exon e_start="36085" e_stop="35956"/>
            <exon e_start="35381" e_stop="35290"/>
            <exon e_start="35018" e_stop="34950"/>
            <exon e_start="34259" e_stop="34202"/>
            <exon e_start="34095" e_stop="33996"/>
            <exon e_start="33680" e_stop="33594"/>
            <exon e_start="33499" e_stop="33421"/>
            <exon e_start="33286" e_stop="33154"/>
            <exon e_start="33085" e_stop="32902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.994" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.137" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.826" e_score="1.000"/>
          <exon-intron don_prob="0.503" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.826"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="38552" e_stop="38477" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.994">
            <gDNA_intron_boundary i_start="38476" i_stop="38336" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38335" e_stop="38240" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.945">
            <gDNA_intron_boundary i_start="38239" i_stop="36086" i_length="2154"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36085" e_stop="35956" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.918" acc_prob="0.995">
            <gDNA_intron_boundary i_start="35955" i_stop="35382" i_length="574"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35381" e_stop="35290" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35289" i_stop="35019" i_length="271"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35018" e_stop="34950" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.137" acc_prob="0.822">
            <gDNA_intron_boundary i_start="34949" i_stop="34260" i_length="690"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34259" e_stop="34202" e_length="58"/>
          </exon>
          <intron i_serial="6" don_prob="0.921" acc_prob="0.974">
            <gDNA_intron_boundary i_start="34201" i_stop="34096" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34095" e_stop="33996" e_length="100"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33995" i_stop="33681" i_length="315"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="33680" e_stop="33594" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.961" acc_prob="0.995">
            <gDNA_intron_boundary i_start="33593" i_stop="33500" i_length="94"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="33499" e_stop="33421" e_length="79"/>
          </exon>
          <intron i_serial="9" don_prob="0.979" acc_prob="0.826">
            <gDNA_intron_boundary i_start="33420" i_stop="33287" i_length="134"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="33286" e_stop="33154" e_length="133"/>
          </exon>
          <intron i_serial="10" don_prob="0.503" acc_prob="0.981">
            <gDNA_intron_boundary i_start="33153" i_stop="33086" i_length="68"/>
          </intron>
          <exon e_serial="11" e_score="0.826">
            <gDNA_exon_boundary e_start="33085" e_stop="32902" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38552" stop="38477"/>
              <exon start="38335" stop="38240"/>
              <exon start="36085" stop="35956"/>
              <exon start="35381" stop="35290"/>
              <exon start="35018" stop="34950"/>
              <exon start="34259" stop="34202"/>
              <exon start="34095" stop="33996"/>
              <exon start="33680" stop="33594"/>
              <exon start="33499" stop="33421"/>
              <exon start="33286" stop="33154"/>
              <exon start="33085" stop="32902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCAGAAGAGTAATGGCGGAAACAATACCCTTCAAAAATCTTCATAGCAGAGAGTACCAGGGACACAAGAAGAAG : GTGCATTCGGTGGCATGGAACTGCAGTGGCACGAAATTAGCTTCAGGTTCTGTGGATCAAACAGCTCGTATTTGGCAAATTGAGCCTCATGGTCAT : GGAAAGGTAAAAGATGTTGAATTAAAGGGTCACACCGACAGTGTGGACCAGTTATGTTGGGATCCAAAACATGCAGAATTGATAGCTACAGCATCTGGTGACAAGACAGTTCGATTATGGGATGCCCGTA : GTGGGAAATGCTCACAGCAAGTTGAACTCAGTGGGGAAAATATCAATATCACTTACAAGCCTGATGGGACACATATAGCTGTTGGGAACAGG : GATGATGAGCTAACAATCTTGGATGTTCGCAAGTTTAAGCCTATTCATAAGCGCAAGTTTAATTATGAG : GTAAATGAGATTGCATGGAACACGGGTGGCGATATGTTCTTTCTTACAACTGGAAATG : GAACTGTGGAAGTCTTAGCTTATCCGTCTCTACAAGCTGTTAACACGCTTAATGCTCACACTGCTGGTTGTTACTGCATTGCAATTGATCCACTAGGAAG : ATATTTTGCTGTTGGAAGTGCTGATTCATTGGTCAGCCTTTGGAGCATCAAGGAGATGCTATGTCTTCGAACATTTACAAAACTTGA : GTGGCCAGTTCGGACAATAAGTTTCAATCACACAGGAGACTACATTGCCTCTGCTAGTGAAGATTTGTTTATTGATATT : GCTAATGTCCAATCTGGACGGTCAGTTCACCAAATTCCATGTCGTGCTGCCATGAACAGTGTTGAATGGAATCCAAAACACAACTTGCTTGCCTTTGCCGGGGATGATAAGAACAAATACCAGGCTGATGAAG : GTGTGTTTCGCATATTTGGCTTTGAGAGCGCATAGAGCCCTGATGAAAGGTTATAAAAGAGGCCTGAAAAAGATCTTGTATAATTTATGATGAAGAAAGCAAAATTTTCAGATGAACAACTTGTTTACATTGATTTTGTAACATTTATTACATGTCATTTTTGAAAAATGCTGAAAGAGACGTT</gDNA_template>
            <first_frame> K  Q  K  S  N  G  G  N  N  T  L  Q  K  S  S  *  Q  R  V  P  G  T  Q  E  E   : G  A  F  G  G  M  E  L  Q  W  H  E  I  S  F  R  F  C  G  S  N  S  S  Y  L  A  N  *  A  S  W  S   : W  K  G  K  R  C  *  I  K  G  S  H  R  Q  C  G  P  V  M  L  G  S  K  T  C  R  I  D  S  Y  S  I  W  *  Q  D  S  S  I  M  G  C  P  * :   W  E  M  L  T  A  S  *  T  Q  W  G  K  Y  Q  Y  H  L  Q  A  *  W  D  T  Y  S  C  W  E  Q   : G  *  *  A  N  N  L  G  C  S  Q  V  *  A  Y  S  *  A  Q  V  *  L  *   : G  K  *  D  C  M  E  H  G  W  R  Y  V  L  S  Y  N  W  K  W :   N  C  G  S  L  S  L  S  V  S  T  S  C  *  H  A  *  C  S  H  C  W  L  L  L  H  C  N  *  S  T  R  K  :  I  F  C  C  W  K  C  *  F  I  G  Q  P  L  E  H  Q  G  D  A  M  S  S  N  I  Y  K  T  *  :  V  A  S  S  D  N  K  F  Q  S  H  R  R  L  H  C  L  C  *  *  R  F  V  Y  *  Y   : C  *  C  P  I  W  T  V  S  S  P  N  S  M  S  C  C  H  E  Q  C  *  M  E  S  K  T  Q  L  A  C  L  C  R  G  *  *  E  Q  I  P  G  *  *  R :   C  V  S  H  I  W  L  *  E  R  I  E  P  *  *  K  V  I  K  E  A  *  K  R  S  C  I  I  Y  D  E  E  S  K  I  F  R  *  T  T  C  L  H  *  F  C  N  I  Y  Y  M  S  F  L  K  N  A  E  R  D  V </first_frame>
            <second_frame>  S  R  R  V  M  A  E  T  I  P  F  K  N  L  H  S  R  E  Y  Q  G  H  K  K  K  :  V  H  S  V  A  W  N  C  S  G  T  K  L  A  S  G  S  V  D  Q  T  A  R  I  W  Q  I  E  P  H  G  H  :  G  K  V  K  D  V  E  L  K  G  H  T  D  S  V  D  Q  L  C  W  D  P  K  H  A  E  L  I  A  T  A  S  G  D  K  T  V  R  L  W  D  A  R   : S  G  K  C  S  Q  Q  V  E  L  S  G  E  N  I  N  I  T  Y  K  P  D  G  T  H  I  A  V  G  N  R  :  D  D  E  L  T  I  L  D  V  R  K  F  K  P  I  H  K  R  K  F  N  Y  E  :  V  N  E  I  A  W  N  T  G  G  D  M  F  F  L  T  T  G  N   : G  T  V  E  V  L  A  Y  P  S  L  Q  A  V  N  T  L  N  A  H  T  A  G  C  Y  C  I  A  I  D  P  L  G  R :   Y  F  A  V  G  S  A  D  S  L  V  S  L  W  S  I  K  E  M  L  C  L  R  T  F  T  K  L  E :   W  P  V  R  T  I  S  F  N  H  T  G  D  Y  I  A  S  A  S  E  D  L  F  I  D  I  :  A  N  V  Q  S  G  R  S  V  H  Q  I  P  C  R  A  A  M  N  S  V  E  W  N  P  K  H  N  L  L  A  F  A  G  D  D  K  N  K  Y  Q  A  D  E   : G  V  F  R  I  F  G  F  E  S  A  *  S  P  D  E  R  L  *  K  R  P  E  K  D  L  V  *  F  M  M  K  K  A  K  F  S  D  E  Q  L  V  Y  I  D  F  V  T  F  I  T  C  H  F  *  K  M  L  K  E  T   </second_frame>
            <third_frame>   A  E  E  *  W  R  K  Q  Y  P  S  K  I  F  I  A  E  S  T  R  D  T  R  R  R :   C  I  R  W  H  G  T  A  V  A  R  N  *  L  Q  V  L  W  I  K  Q  L  V  F  G  K  L  S  L  M  V  M :   E  R  *  K  M  L  N  *  R  V  T  P  T  V  W  T  S  Y  V  G  I  Q  N  M  Q  N  *  *  L  Q  H  L  V  T  R  Q  F  D  Y  G  M  P  V  :  V  G  N  A  H  S  K  L  N  S  V  G  K  I  S  I  S  L  T  S  L  M  G  H  I  *  L  L  G  T  G :   M  M  S  *  Q  S  W  M  F  A  S  L  S  L  F  I  S  A  S  L  I  M  R :   *  M  R  L  H  G  T  R  V  A  I  C  S  F  L  Q  L  E  M  :  E  L  W  K  S  *  L  I  R  L  Y  K  L  L  T  R  L  M  L  T  L  L  V  V  T  A  L  Q  L  I  H  *  E   : D  I  L  L  L  E  V  L  I  H  W  S  A  F  G  A  S  R  R  C  Y  V  F  E  H  L  Q  N  L   : S  G  Q  F  G  Q  *  V  S  I  T  Q  E  T  T  L  P  L  L  V  K  I  C  L  L  I  L :   L  M  S  N  L  D  G  Q  F  T  K  F  H  V  V  L  P  *  T  V  L  N  G  I  Q  N  T  T  C  L  P  L  P  G  M  I  R  T  N  T  R  L  M  K  :  V  C  F  A  Y  L  A  L  R  A  H  R  A  L  M  K  G  Y  K  R  G  L  K  K  I  L  Y  N  L  *  *  R  K  Q  N  F  Q  M  N  N  L  F  T  L  I  L  *  H  L  L  H  V  I  F  E  K  C  *  K  R  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38551" stop="38477"/>
                    <exon start="38335" stop="38240"/>
                    <exon start="36085" stop="35956"/>
                    <exon start="35381" stop="35290"/>
                    <exon start="35018" stop="34950"/>
                    <exon start="34259" stop="34202"/>
                    <exon start="34095" stop="33996"/>
                    <exon start="33680" stop="33594"/>
                    <exon start="33499" stop="33421"/>
                    <exon start="33286" stop="33154"/>
                    <exon start="33085" stop="33051"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>951</number_coding_nucleotides>
                  <number_encoded_amino_acids>317</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRRVMAETIPFKNLHSREYQGHKKKVHSVAWNCSGTKLASGSVDQTARIWQIEPHGHGKVKDVELKGHTDSVDQLCWDPKHAELIATASGDKTVRLWDARSGKCSQQVELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNTGGDMFFLTTGNGTVEVLAYPSLQAVNTLNAHTAGCYCIAIDPLGRYFAVGSADSLVSLWSIKEMLCLRTFTKLEWPVRTISFNHTGDYIASASEDLFIDIANVQSGRSVHQIPCRAAMNSVEWNPKHNLLAFAGDDKNKYQADEGVFRIFGFESA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="41041" PGL_stop="47469"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41041" e_stop="41224"/>
            <exon e_start="42621" e_stop="42706"/>
            <exon e_start="44622" e_stop="44767"/>
            <exon e_start="45609" e_stop="45728"/>
            <exon e_start="45801" e_stop="45929"/>
            <exon e_start="46689" e_stop="46832"/>
            <exon e_start="46944" e_stop="47469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.759" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.990" e_score="0.992"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41041" e_stop="41224" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41225" i_stop="42620" i_length="1396"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42621" e_stop="42706" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.759">
            <gDNA_intron_boundary i_start="42707" i_stop="44621" i_length="1915"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44622" e_stop="44767" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.783">
            <gDNA_intron_boundary i_start="44768" i_stop="45608" i_length="841"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="45609" e_stop="45728" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.990">
            <gDNA_intron_boundary i_start="45729" i_stop="45800" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45801" e_stop="45929" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="45930" i_stop="46688" i_length="759"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="46689" e_stop="46832" e_length="144"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="46833" i_stop="46943" i_length="111"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="46944" e_stop="47469" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41041" stop="41224"/>
              <exon start="42621" stop="42706"/>
              <exon start="44622" stop="44767"/>
              <exon start="45609" stop="45728"/>
              <exon start="45801" stop="45929"/>
              <exon start="46689" stop="46832"/>
              <exon start="46944" stop="47469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAGAGGGACTCCTTTTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA : GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG : AACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAA : ATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGT : TTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAG : GAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCTCTTCATGTTATTGTGGAAGCTGAACTGCCAGTGGAGATCATTGATGCCCGGCTATTGCAAGCACGTGAGATATTGGAAGATCTGCTCAAGCCTATG : GATGAGTCACAGGATTTCTACAAAAAACAGCAGTTGCGTGAACTTGCAATGCTGAATGGTACTCTTCGTGAAGAAGGTTCTCAAATGTCTGGTTCTGTTTCCCCCTTCCACAACAGTCTTAGTCTTGGGATGAAGAGGGCTAAAACCAGAGTGTGATCTTTGTGTAGTGGGATTTGGAGCTTGTGCATTGATACACACCACTAACCAACCAGCAGGTCCTATATGCAACCGATGTTGCTATAACGTCTTATGCCTCGCACTGCCATCGGGGCACTGGTGCTGTTCTGTGCCAGTTCTAACTTGTCTCTATAATGATATGAAGTGTGTTTATGTTCCGGTCAGGGAAGATTTAGTAACAGTAAAGCCATAGTTGTGGACCGCTTAGAGGTTTGCTTGATGTCGTCAGAGCGGTGTCTTACCAACGTCATTGTATTATTCCATTAATTTCTAGTTTGTGATTTGAAGGTGTGGGAATGACTGTAATGCGAGCGAGGCGTGTCTGTACTGATAAAAAAAGAAAGAAAAA</gDNA_template>
            <first_frame> K  Q  R  D  S  F  L  E  S  E  K  *  V  N  L  A  V  I  G  F  C  R  R  R  *  R  C  L  P  E  D  T  W  P  T  H  H  L  R  L  L  L  S  L  L  I  S  P  D  F  A  L  L  P  L  P  S  P  S  K  R   : S  I  S  Q  S  Y  L  Q  N  A  T  N  S  A  H  L  C  P  S  F  L  I  A  I  D  C  *  I  R  :  N  F  C  V  *  L  H  C  W  G  M  H  Q  C  *  I  K  M  G  L  N  M  L  A  P  W  L  Q  E  E  C  F  Q  M  E  E  L  M  W  T  D  G  H  H  H  F  N  Q  K :   Y  Q  V  *  C  T  P  R  R  L  R  T  G  L  I  L  K  V  T  H  Q  A  S  *  *  S  E  H  S  E  L  I  Y  R  W  I  N  I  L  V :   Y  L  C  S  T  I  S  W  A  D  F  W  A  L  E  G  T  L  *  S  G  W  K  L  L  L  N  A  G  F  *  *  E  D  A  E  A  S  K  I  Q  *  R :   K  K  *  *  E  A  N  R  D  M  S  T  *  M  S  L  F  M  L  L  W  K  L  N  C  Q  W  R  S  L  M  P  G  Y  C  K  H  V  R  Y  W  K  I  C  S  S  L  W :   M  S  H  R  I  S  T  K  N  S  S  C  V  N  L  Q  C  *  M  V  L  F  V  K  K  V  L  K  C  L  V  L  F  P  P  S  T  T  V  L  V  L  G  *  R  G  L  K  P  E  C  D  L  C  V  V  G  F  G  A  C  A  L  I  H  T  T  N  Q  P  A  G  P  I  C  N  R  C  C  Y  N  V  L  C  L  A  L  P  S  G  H  W  C  C  S  V  P  V  L  T  C  L  Y  N  D  M  K  C  V  Y  V  P  V  R  E  D  L  V  T  V  K  P  *  L  W  T  A  *  R  F  A  *  C  R  Q  S  G  V  L  P  T  S  L  Y  Y  S  I  N  F  *  F  V  I  *  R  C  G  N  D  C  N  A  S  E  A  C  L  Y  *  *  K  K  K  E  K </first_frame>
            <second_frame>  N  R  G  T  P  F  W  K  V  K  S  R  *  I  W  Q  S  S  D  S  V  A  A  G  E  D  V  F  R  K  I  H  G  L  L  T  I  S  V  C  S  S  V  S  S  Y  R  R  T  S  L  C  F  L  C  H  R  R  A  R  E  :  V  S  L  R  V  T  C  R  T  P  Q  T  R  P  I  C  A  R  P  S  S  L  L  S  I  A  E  S  G :   T  F  A  C  N  Y  T  V  G  E  C  I  S  V  R  S  K  W  A  *  T  C  *  P  P  G  F  R  R  N  V  F  K  W  R  S  *  C  G  Q  M  G  I  T  I  S  I  R   : N  I  R  F  N  A  L  P  V  D  S  E  L  A  *  Y  S  K  *  L  I  R  P  H  S  E  A  N  T  Q  N  *  Y  T  G  G  S  I  S  *   : F  T  F  A  V  Q  F  R  G  P  T  S  G  P  *  R  E  L  S  K  A  G  G  S  Y  Y  *  M  P  G  S  D  K  R  T  R  K  H  Q  R  S  S  K   : G  R  N  D  E  R  Q  T  G  I  *  A  P  E  *  A  S  S  C  Y  C  G  S  *  T  A  S  G  D  H  *  C  P  A  I  A  S  T  *  D  I  G  R  S  A  Q  A  Y   : G  *  V  T  G  F  L  Q  K  T  A  V  A  *  T  C  N  A  E  W  Y  S  S  *  R  R  F  S  N  V  W  F  C  F  P  L  P  Q  Q  S  *  S  W  D  E  E  G  *  N  Q  S  V  I  F  V  *  W  D  L  E  L  V  H  *  Y  T  P  L  T  N  Q  Q  V  L  Y  A  T  D  V  A  I  T  S  Y  A  S  H  C  H  R  G  T  G  A  V  L  C  Q  F  *  L  V  S  I  M  I  *  S  V  F  M  F  R  S  G  K  I  *  *  Q  *  S  H  S  C  G  P  L  R  G  L  L  D  V  V  R  A  V  S  Y  Q  R  H  C  I  I  P  L  I  S  S  L  *  F  E  G  V  G  M  T  V  M  R  A  R  R  V  C  T  D  K  K  R  K  K   </second_frame>
            <third_frame>   T  E  G  L  L  F  G  K  *  K  V  G  E  S  G  S  H  R  I  L  S  P  P  V  K  M  S  S  G  R  Y  M  A  Y  S  P  S  P  S  A  P  Q  S  P  H  I  A  G  L  R  S  A  S  S  A  I  A  E  Q  E  K :   Y  L  S  E  L  L  A  E  R  H  K  L  G  P  F  V  P  V  L  P  H  C  Y  R  L  L  N  Q   : E  L  L  R  V  T  T  L  L  G  N  A  S  V  L  D  Q  N  G  L  E  H  A  S  P  L  A  S  G  G  M  F  S  N  G  G  A  N  V  D  R  W  A  S  P  F  Q  S  E  :  I  S  G  L  M  H  S  P  S  T  Q  N  W  L  N  T  Q  S  N  S  S  G  L  I  V  K  R  T  L  R  I  D  I  P  V  D  Q  Y  P  S  :  L  P  L  Q  Y  N  F  V  G  R  L  L  G  P  R  G  N  S  L  K  R  V  E  A  T  T  E  C  R  V  L  I  R  G  R  G  S  I  K  D  P  V  K  :  E  E  M  M  R  G  K  P  G  Y  E  H  L  N  E  P  L  H  V  I  V  E  A  E  L  P  V  E  I  I  D  A  R  L  L  Q  A  R  E  I  L  E  D  L  L  K  P  M  :  D  E  S  Q  D  F  Y  K  K  Q  Q  L  R  E  L  A  M  L  N  G  T  L  R  E  E  G  S  Q  M  S  G  S  V  S  P  F  H  N  S  L  S  L  G  M  K  R  A  K  T  R  V  *  S  L  C  S  G  I  W  S  L  C  I  D  T  H  H  *  P  T  S  R  S  Y  M  Q  P  M  L  L  *  R  L  M  P  R  T  A  I  G  A  L  V  L  F  C  A  S  S  N  L  S  L  *  *  Y  E  V  C  L  C  S  G  Q  G  R  F  S  N  S  K  A  I  V  V  D  R  L  E  V  C  L  M  S  S  E  R  C  L  T  N  V  I  V  L  F  H  *  F  L  V  C  D  L  K  V  W  E  *  L  *  C  E  R  G  V  S  V  L  I  K  K  E  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41070" stop="41224"/>
                    <exon start="42621" stop="42706"/>
                    <exon start="44622" stop="44767"/>
                    <exon start="45609" stop="45728"/>
                    <exon start="45801" stop="45929"/>
                    <exon start="46689" stop="46832"/>
                    <exon start="46944" stop="47099"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVGESGSHRILSPPVKMSSGRYMAYSPSPSAPQSPHIAGLRSASSAIAEQEKYLSELLAERHKLGPFVPVLPHCYRLLNQELLRVTTLLGNASVLDQNGLEHASPLASGGMFSNGGANVDRWASPFQSEISGLMHSPSTQNWLNTQSNSSGLIVKRTLRIDIPVDQYPSLPLQYNFVGRLLGPRGNSLKRVEATTECRVLIRGRGSIKDPVKEEMMRGKPGYEHLNEPLHVIVEAELPVEIIDARLLQAREILEDLLKPMDESQDFYKKQQLRELAMLNGTLREEGSQMSGSVSPFHNSLSLGMKRAKTRV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47077" stop="47313"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGLKPECDLCVVGFGACALIHTTNQPAGPICNRCCYNVLCLALPSGHWCCSVPVLTCLYNDMKCVYVPVREDLVTVKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43815" e_stop="44404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43815" e_stop="44404" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43815" stop="44404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGACCTGCACTCTGGGAATATCTATATCATAGTAAGAGGTTATACTGGGCATGTTATATTCCTCTTGTAAATGTGTTTGGCAATGGTGGATTGCATGGCCAAGGACATGTTAGACCTATAAGGAAATTCTTTTCTTTTCATATATCTTCTAAATATATCTTGGAAATGGCGGAGGATATGTCCAAAGACAAGTTTAACCTTCAAGCAGTAATTTTTTTTTTAATTATGACCAACAACCTAGGAGAGTCCTAACATTTATGAGATTTTTTTTACTGTTGTCTGCCTAAATTCTTCTCTCCTTCAATTAGGTTAGACCTTCTCCTCCTTCCTCCGTTTGGTTGTCATCTTCGGGACTTCTTTTAATAAAACGGTGTTGCTCCTAGTTGCTGTCTAGCATCACACCAAACCACTTAAATGGCAGGGTTTCTTATTTGTTATAGAAAATATTGTATATACCTTGATATTGAAGTTTGGCATCTTCAACTGCAAAAAAAGGTGCCTTAAAGTGACAGAATTAATGCCCCTCTAATTGTACCGTTGCGTCGTAGATTTTCTGCCCTATGCTTCCCATCTCTACTGTTCCCCGTGT</gDNA_template>
            <first_frame> W  T  C  T  L  G  I  S  I  S  *  *  E  V  I  L  G  M  L  Y  S  S  C  K  C  V  W  Q  W  W  I  A  W  P  R  T  C  *  T  Y  K  E  I  L  F  F  S  Y  I  F  *  I  Y  L  G  N  G  G  G  Y  V  Q  R  Q  V  *  P  S  S  S  N  F  F  F  N  Y  D  Q  Q  P  R  R  V  L  T  F  M  R  F  F  L  L  L  S  A  *  I  L  L  S  F  N  *  V  R  P  S  P  P  S  S  V  W  L  S  S  S  G  L  L  L  I  K  R  C  C  S  *  L  L  S  S  I  T  P  N  H  L  N  G  R  V  S  Y  L  L  *  K  I  L  Y  I  P  *  Y  *  S  L  A  S  S  T  A  K  K  G  A  L  K  *  Q  N  *  C  P  S  N  C  T  V  A  S  *  I  F  C  P  M  L  P  I  S  T  V  P  R   </first_frame>
            <second_frame>  G  P  A  L  W  E  Y  L  Y  H  S  K  R  L  Y  W  A  C  Y  I  P  L  V  N  V  F  G  N  G  G  L  H  G  Q  G  H  V  R  P  I  R  K  F  F  S  F  H  I  S  S  K  Y  I  L  E  M  A  E  D  M  S  K  D  K  F  N  L  Q  A  V  I  F  F  L  I  M  T  N  N  L  G  E  S  *  H  L  *  D  F  F  Y  C  C  L  P  K  F  F  S  P  S  I  R  L  D  L  L  L  L  P  P  F  G  C  H  L  R  D  F  F  *  *  N  G  V  A  P  S  C  C  L  A  S  H  Q  T  T  *  M  A  G  F  L  I  C  Y  R  K  Y  C  I  Y  L  D  I  E  V  W  H  L  Q  L  Q  K  K  V  P  *  S  D  R  I  N  A  P  L  I  V  P  L  R  R  R  F  S  A  L  C  F  P  S  L  L  F  P  V  </second_frame>
            <third_frame>   D  L  H  S  G  N  I  Y  I  I  V  R  G  Y  T  G  H  V  I  F  L  L  *  M  C  L  A  M  V  D  C  M  A  K  D  M  L  D  L  *  G  N  S  F  L  F  I  Y  L  L  N  I  S  W  K  W  R  R  I  C  P  K  T  S  L  T  F  K  Q  *  F  F  F  *  L  *  P  T  T  *  E  S  P  N  I  Y  E  I  F  F  T  V  V  C  L  N  S  S  L  L  Q  L  G  *  T  F  S  S  F  L  R  L  V  V  I  F  G  T  S  F  N  K  T  V  L  L  L  V  A  V  *  H  H  T  K  P  L  K  W  Q  G  F  L  F  V  I  E  N  I  V  Y  T  L  I  L  K  F  G  I  F  N  C  K  K  R  C  L  K  V  T  E  L  M  P  L  *  L  Y  R  C  V  V  D  F  L  P  Y  A  S  H  L  Y  C  S  P  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43816" stop="44067"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPALWEYLYHSKRLYWACYIPLVNVFGNGGLHGQGHVRPIRKFFSFHISSKYILEMAEDMSKDKFNLQAVIFFLIMTNNLGES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="41071" e_stop="41224"/>
            <exon e_start="42621" e_stop="42706"/>
            <exon e_start="45609" e_stop="45728"/>
            <exon e_start="45801" e_stop="45929"/>
            <exon e_start="46689" e_stop="46736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.926" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="41071" e_stop="41224" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41225" i_stop="42620" i_length="1396"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42621" e_stop="42706" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.783">
            <gDNA_intron_boundary i_start="42707" i_stop="45608" i_length="2902"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45609" e_stop="45728" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.990">
            <gDNA_intron_boundary i_start="45729" i_stop="45800" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45801" e_stop="45929" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="45930" i_stop="46688" i_length="759"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46689" e_stop="46736" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41071" stop="41224"/>
              <exon start="42621" stop="42706"/>
              <exon start="45609" stop="45728"/>
              <exon start="45801" stop="45929"/>
              <exon start="46689" stop="46736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336712" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA : GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG : ATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACCGGTGGATCAATATCCTAGT : TTACCTTTGCAGTACAATTTCGTGGGCCGACTTCTGGGCCCTAGAGGGAACTCTCTAAAGCGGGTGGAAGCTACTACTGAATGCCGGGTTCTGATAAGAGGACGCGGAAGCATCAAAGATCCAGTAAAG : GAAGAAATGATGAGAGGCAAACCGGGATATGAGCACCTGAATGAGCCT</gDNA_template>
            <first_frame> K  *  V  N  L  A  V  I  G  F  C  R  R  R  *  R  C  L  P  E  D  T  W  P  T  H  H  L  R  L  L  L  S  L  L  I  S  P  D  F  A  L  L  P  L  P  S  P  S  K  R   : S  I  S  Q  S  Y  L  Q  N  A  T  N  S  A  H  L  C  P  S  F  L  I  A  I  D  C  *  I  R  :  I  S  G  L  M  H  S  P  S  T  Q  N  W  L  N  T  Q  S  N  S  S  G  L  I  V  K  R  T  L  R  I  D  I  P  V  D  Q  Y  P  S  :  L  P  L  Q  Y  N  F  V  G  R  L  L  G  P  R  G  N  S  L  K  R  V  E  A  T  T  E  C  R  V  L  I  R  G  R  G  S  I  K  D  P  V  K  :  E  E  M  M  R  G  K  P  G  Y  E  H  L  N  E  P </first_frame>
            <second_frame>  S  R  *  I  W  Q  S  S  D  S  V  A  A  G  E  D  V  F  R  K  I  H  G  L  L  T  I  S  V  C  S  S  V  S  S  Y  R  R  T  S  L  C  F  L  C  H  R  R  A  R  E  :  V  S  L  R  V  T  C  R  T  P  Q  T  R  P  I  C  A  R  P  S  S  L  L  S  I  A  E  S  G :   Y  Q  V  *  C  T  P  R  R  L  R  T  G  L  I  L  K  V  T  H  Q  A  S  *  *  S  E  H  S  E  L  I  Y  R  W  I  N  I  L  V :   Y  L  C  S  T  I  S  W  A  D  F  W  A  L  E  G  T  L  *  S  G  W  K  L  L  L  N  A  G  F  *  *  E  D  A  E  A  S  K  I  Q  *  R :   K  K  *  *  E  A  N  R  D  M  S  T  *  M  S   </second_frame>
            <third_frame>   V  G  E  S  G  S  H  R  I  L  S  P  P  V  K  M  S  S  G  R  Y  M  A  Y  S  P  S  P  S  A  P  Q  S  P  H  I  A  G  L  R  S  A  S  S  A  I  A  E  Q  E  K :   Y  L  S  E  L  L  A  E  R  H  K  L  G  P  F  V  P  V  L  P  H  C  Y  R  L  L  N  Q   : D  I  R  F  N  A  L  P  V  D  S  E  L  A  *  Y  S  K  *  L  I  R  P  H  S  E  A  N  T  Q  N  *  Y  T  G  G  S  I  S  *   : F  T  F  A  V  Q  F  R  G  P  T  S  G  P  *  R  E  L  S  K  A  G  G  S  Y  Y  *  M  P  G  S  D  K  R  T  R  K  H  Q  R  S  S  K   : G  R  N  D  E  R  Q  T  G  I  *  A  P  E  *  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42701" stop="42706"/>
                    <exon start="45609" stop="45728"/>
                    <exon start="45801" stop="45929"/>
                    <exon start="46689" stop="46736"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRISGLMHSPSTQNWLNTQSNSSGLIVKRTLRIDIPVDQYPSLPLQYNFVGRLLGPRGNSLKRVEATTECRVLIRGRGSIKDPVKEEMMRGKPGYEHLNEP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41073" stop="41224"/>
                    <exon start="42621" stop="42706"/>
                    <exon start="45609" stop="45652"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGESGSHRILSPPVKMSSGRYMAYSPSPSAPQSPHIAGLRSASSAIAEQEKYLSELLAERHKLGPFVPVLPHCYRLLNQDIRFNALPVDSELA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41081" stop="41224"/>
                    <exon start="42621" stop="42706"/>
                    <exon start="45609" stop="45621"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWQSSDSVAAGEDVFRKIHGLLTISVCSSVSSYRRTSLCFLCHRRAREVSLRVTCRTPQTRPICARPSSLLSIAESGYQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="41058" e_stop="41224"/>
            <exon e_start="42621" e_stop="42706"/>
            <exon e_start="44622" e_stop="44767"/>
            <exon e_start="44913" e_stop="44936"/>
            <exon e_start="45609" e_stop="45709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.759" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.783" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41058" e_stop="41224" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41225" i_stop="42620" i_length="1396"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42621" e_stop="42706" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.759">
            <gDNA_intron_boundary i_start="42707" i_stop="44621" i_length="1915"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44622" e_stop="44767" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44768" i_stop="44912" i_length="145"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44913" e_stop="44936" e_length="24"/>
          </exon>
          <intron i_serial="4" don_prob="0.899" acc_prob="0.783">
            <gDNA_intron_boundary i_start="44937" i_stop="45608" i_length="672"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45609" e_stop="45709" e_length="101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41058" stop="41224"/>
              <exon start="42621" stop="42706"/>
              <exon start="44622" stop="44767"/>
              <exon start="44913" stop="44936"/>
              <exon start="45609" stop="45709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGAAAGTGAAAAGTAGGTGAATCTGGCAGTCATCGGATTCTGTCGCCGCCGGTGAAGATGTCTTCCGGAAGATACATGGCCTACTCACCATCTCCGTCTGCTCCTCAGTCTCCTCATATCGCCGGACTTCGCTCTGCTTCCTCTGCCATCGCCGAGCAAGAGAA : GTATCTCTCAGAGTTACTTGCAGAACGCCACAAACTCGGCCCATTTGTGCCCGTCCTTCCTCATTGCTATCGATTGCTGAATCAGG : AACTTTTGCGTGTAACTACACTGTTGGGGAATGCATCAGTGTTAGATCAAAATGGGCTTGAACATGCTAGCCCCCTGGCTTCAGGAGGAATGTTTTCAAATGGAGGAGCTAATGTGGACAGATGGGCATCACCATTTCAATCAGAA : GTAGGTGAAGCTAACAACAACAAG : ATATCAGGTTTAATGCACTCCCCGTCGACTCAGAACTGGCTTAATACTCAAAGTAACTCATCAGGCCTCATAGTGAAGCGAACACTCAGAATTGATATACC</gDNA_template>
            <first_frame> F  G  K  *  K  V  G  E  S  G  S  H  R  I  L  S  P  P  V  K  M  S  S  G  R  Y  M  A  Y  S  P  S  P  S  A  P  Q  S  P  H  I  A  G  L  R  S  A  S  S  A  I  A  E  Q  E  K :   Y  L  S  E  L  L  A  E  R  H  K  L  G  P  F  V  P  V  L  P  H  C  Y  R  L  L  N  Q   : E  L  L  R  V  T  T  L  L  G  N  A  S  V  L  D  Q  N  G  L  E  H  A  S  P  L  A  S  G  G  M  F  S  N  G  G  A  N  V  D  R  W  A  S  P  F  Q  S  E  :  V  G  E  A  N  N  N  K  :  I  S  G  L  M  H  S  P  S  T  Q  N  W  L  N  T  Q  S  N  S  S  G  L  I  V  K  R  T  L  R  I  D  I   </first_frame>
            <second_frame>  L  E  S  E  K  *  V  N  L  A  V  I  G  F  C  R  R  R  *  R  C  L  P  E  D  T  W  P  T  H  H  L  R  L  L  L  S  L  L  I  S  P  D  F  A  L  L  P  L  P  S  P  S  K  R   : S  I  S  Q  S  Y  L  Q  N  A  T  N  S  A  H  L  C  P  S  F  L  I  A  I  D  C  *  I  R  :  N  F  C  V  *  L  H  C  W  G  M  H  Q  C  *  I  K  M  G  L  N  M  L  A  P  W  L  Q  E  E  C  F  Q  M  E  E  L  M  W  T  D  G  H  H  H  F  N  Q  K :   *  V  K  L  T  T  T  R :   Y  Q  V  *  C  T  P  R  R  L  R  T  G  L  I  L  K  V  T  H  Q  A  S  *  *  S  E  H  S  E  L  I  Y  </second_frame>
            <third_frame>   W  K  V  K  S  R  *  I  W  Q  S  S  D  S  V  A  A  G  E  D  V  F  R  K  I  H  G  L  L  T  I  S  V  C  S  S  V  S  S  Y  R  R  T  S  L  C  F  L  C  H  R  R  A  R  E  :  V  S  L  R  V  T  C  R  T  P  Q  T  R  P  I  C  A  R  P  S  S  L  L  S  I  A  E  S  G :   T  F  A  C  N  Y  T  V  G  E  C  I  S  V  R  S  K  W  A  *  T  C  *  P  P  G  F  R  R  N  V  F  K  W  R  S  *  C  G  Q  M  G  I  T  I  S  I  R   : S  R  *  S  *  Q  Q  Q   : D  I  R  F  N  A  L  P  V  D  S  E  L  A  *  Y  S  K  *  L  I  R  P  H  S  E  A  N  T  Q  N  *  Y  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41070" stop="41224"/>
                    <exon start="42621" stop="42706"/>
                    <exon start="44622" stop="44767"/>
                    <exon start="44913" stop="44936"/>
                    <exon start="45609" stop="45707"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVGESGSHRILSPPVKMSSGRYMAYSPSPSAPQSPHIAGLRSASSAIAEQEKYLSELLAERHKLGPFVPVLPHCYRLLNQELLRVTTLLGNASVLDQNGLEHASPLASGGMFSNGGANVDRWASPFQSEVGEANNNKISGLMHSPSTQNWLNTQSNSSGLIVKRTLRIDI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="48218" PGL_stop="52452"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48218" e_stop="48260"/>
            <exon e_start="49428" e_stop="49519"/>
            <exon e_start="49917" e_stop="50044"/>
            <exon e_start="50824" e_stop="50928"/>
            <exon e_start="51019" e_stop="51346"/>
            <exon e_start="52406" e_stop="52452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.930"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.617"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="48218" e_stop="48260" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="48261" i_stop="49427" i_length="1167"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49428" e_stop="49519" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49520" i_stop="49916" i_length="397"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49917" e_stop="50044" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="50045" i_stop="50823" i_length="779"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50824" e_stop="50928" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.926">
            <gDNA_intron_boundary i_start="50929" i_stop="51018" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="51019" e_stop="51346" e_length="328"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="51347" i_stop="52405" i_length="1059"/>
          </intron>
          <exon e_serial="6" e_score="0.617">
            <gDNA_exon_boundary e_start="52406" e_stop="52452" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48218" stop="48260"/>
              <exon start="49428" stop="49519"/>
              <exon start="49917" stop="50044"/>
              <exon start="50824" stop="50928"/>
              <exon start="51019" stop="51346"/>
              <exon start="52406" stop="52452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322018" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCAGCCTCCATCAAAAACTCTCTTCTCTCGAAAGAAAAAG : TGATAAGTCTCGCAAATTCGTTATGGCTTCAAAGAGGATTCAGAAGGAATTGAAGGACTTGCAGAAAGACCCCCCTGCTTCCTGCAGTGCAG : GCCCTGTAGGTCAGGATATGTTCCATTGGCAAGCTACCATAATGGGTCCATCTGACAGTCCGTTTTCTGGGGGTGTTTTCCTTGCATCTATCCATTTCCCTCCAGATTATCCTTTCAAGCCCCCAAAG : GTCTCTTTCAAAACCAAGGTTTTCCACCCAAACATCAACAGTAATGGTAGTATTTGTCTTGATATCCTAAAGGAACAATGGAGCCCTGCTCTTACTGTATCCAAG : GTGCTGCTTTCTATTTGCTCTTTGCTTACTGATCCCAATCCAGATGATCCTTTAGTGCCAGAGATTGCTCACATGTACAAGACGGATAGACCGAAGTATGAGAGTACTGCCAGATCATGGACCCAGAAATACGCAATGGGTTGAACACATCTGTTTCTACTTTCATGAATATCATCGAACCTTTATTCTATAGTAGTAAATAAACTTAGGCATGGTGCACAATTTATAGATATTGGTGTTTCTTGTTTTCTGGTATATTGCCTTTTAAGTTTTTGACTGGTTAACGATTTATCATTTGGTGAAACTTAAGATATGTTTTTGTTGACAT : CGCATCAAATAATTAAATAAAAAAGAATCAACCTAAAAACGAAAATA</gDNA_template>
            <first_frame> F  A  A  S  I  K  N  S  L  L  S  K  E  K   : V  I  S  L  A  N  S  L  W  L  Q  R  G  F  R  R  N  *  R  T  C  R  K  T  P  L  L  P  A  V  Q  :  A  L  *  V  R  I  C  S  I  G  K  L  P  *  W  V  H  L  T  V  R  F  L  G  V  F  S  L  H  L  S  I  S  L  Q  I  I  L  S  S  P  Q  R :   S  L  S  K  P  R  F  S  T  Q  T  S  T  V  M  V  V  F  V  L  I  S  *  R  N  N  G  A  L  L  L  L  Y  P  R :   C  C  F  L  F  A  L  C  L  L  I  P  I  Q  M  I  L  *  C  Q  R  L  L  T  C  T  R  R  I  D  R  S  M  R  V  L  P  D  H  G  P  R  N  T  Q  W  V  E  H  I  C  F  Y  F  H  E  Y  H  R  T  F  I  L  *  *  *  I  N  L  G  M  V  H  N  L  *  I  L  V  F  L  V  F  W  Y  I  A  F  *  V  F  D  W  L  T  I  Y  H  L  V  K  L  K  I  C  F  C  *  H  :  R  I  K  *  L  N  K  K  E  S  T  *  K  R  K   </first_frame>
            <second_frame>  L  Q  P  P  S  K  T  L  F  S  R  K  K  K  :  *  *  V  S  Q  I  R  Y  G  F  K  E  D  S  E  G  I  E  G  L  A  E  R  P  P  C  F  L  Q  C  R :   P  C  R  S  G  Y  V  P  L  A  S  Y  H  N  G  S  I  *  Q  S  V  F  W  G  C  F  P  C  I  Y  P  F  P  S  R  L  S  F  Q  A  P  K   : G  L  F  Q  N  Q  G  F  P  P  K  H  Q  Q  *  W  *  Y  L  S  *  Y  P  K  G  T  M  E  P  C  S  Y  C  I  Q   : G  A  A  F  Y  L  L  F  A  Y  *  S  Q  S  R  *  S  F  S  A  R  D  C  S  H  V  Q  D  G  *  T  E  V  *  E  Y  C  Q  I  M  D  P  E  I  R  N  G  L  N  T  S  V  S  T  F  M  N  I  I  E  P  L  F  Y  S  S  K  *  T  *  A  W  C  T  I  Y  R  Y  W  C  F  L  F  S  G  I  L  P  F  K  F  L  T  G  *  R  F  I  I  W  *  N  L  R  Y  V  F  V  D  I :   A  S  N  N  *  I  K  K  N  Q  P  K  N  E  N  </second_frame>
            <third_frame>   C  S  L  H  Q  K  L  S  S  L  E  R  K  S :   D  K  S  R  K  F  V  M  A  S  K  R  I  Q  K  E  L  K  D  L  Q  K  D  P  P  A  S  C  S  A   : G  P  V  G  Q  D  M  F  H  W  Q  A  T  I  M  G  P  S  D  S  P  F  S  G  G  V  F  L  A  S  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  S  F  K  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  V  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  Y  K  T  D  R  P  K  Y  E  S  T  A  R  S  W  T  Q  K  Y  A  M  G  *  T  H  L  F  L  L  S  *  I  S  S  N  L  Y  S  I  V  V  N  K  L  R  H  G  A  Q  F  I  D  I  G  V  S  C  F  L  V  Y  C  L  L  S  F  *  L  V  N  D  L  S  F  G  E  T  *  D  M  F  L  L  T   : S  H  Q  I  I  K  *  K  R  I  N  L  K  T  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48220" stop="48260"/>
                    <exon start="49428" stop="49519"/>
                    <exon start="49917" stop="50044"/>
                    <exon start="50824" stop="50928"/>
                    <exon start="51019" stop="51162"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSLHQKLSSLERKSDKSRKFVMASKRIQKELKDLQKDPPASCSAGPVGQDMFHWQATIMGPSDSPFSGGVFLASIHFPPDYPFKPPKVSFKTKVFHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYESTARSWTQKYAMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="57646" PGL_stop="63889"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57646" e_stop="57988"/>
            <exon e_start="58874" e_stop="58986"/>
            <exon e_start="59094" e_stop="59391"/>
            <exon e_start="59659" e_stop="59758"/>
            <exon e_start="59848" e_stop="60114"/>
            <exon e_start="60608" e_stop="60685"/>
            <exon e_start="60788" e_stop="60892"/>
            <exon e_start="60999" e_stop="61048"/>
            <exon e_start="61143" e_stop="61242"/>
            <exon e_start="61359" e_stop="61457"/>
            <exon e_start="61540" e_stop="61653"/>
            <exon e_start="61758" e_stop="61917"/>
            <exon e_start="62707" e_stop="63095"/>
            <exon e_start="63206" e_stop="63280"/>
            <exon e_start="63622" e_stop="63889"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.773" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.863" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.943" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.533" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.747" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57646" e_stop="57988" e_length="343"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.773">
            <gDNA_intron_boundary i_start="57989" i_stop="58873" i_length="885"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58874" e_stop="58986" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.866" acc_prob="0.948">
            <gDNA_intron_boundary i_start="58987" i_stop="59093" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59094" e_stop="59391" e_length="298"/>
          </exon>
          <intron i_serial="3" don_prob="0.863" acc_prob="0.980">
            <gDNA_intron_boundary i_start="59392" i_stop="59658" i_length="267"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59659" e_stop="59758" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="59759" i_stop="59847" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59848" e_stop="60114" e_length="267"/>
          </exon>
          <intron i_serial="5" don_prob="0.828" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60115" i_stop="60607" i_length="493"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="60608" e_stop="60685" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.963" acc_prob="0.995">
            <gDNA_intron_boundary i_start="60686" i_stop="60787" i_length="102"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="60788" e_stop="60892" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60893" i_stop="60998" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="60999" e_stop="61048" e_length="50"/>
          </exon>
          <intron i_serial="8" don_prob="0.943" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61049" i_stop="61142" i_length="94"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="61143" e_stop="61242" e_length="100"/>
          </exon>
          <intron i_serial="9" don_prob="0.991" acc_prob="0.866">
            <gDNA_intron_boundary i_start="61243" i_stop="61358" i_length="116"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="61359" e_stop="61457" e_length="99"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61458" i_stop="61539" i_length="82"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="61540" e_stop="61653" e_length="114"/>
          </exon>
          <intron i_serial="11" don_prob="0.533" acc_prob="0.969">
            <gDNA_intron_boundary i_start="61654" i_stop="61757" i_length="104"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="61758" e_stop="61917" e_length="160"/>
          </exon>
          <intron i_serial="12" don_prob="0.985" acc_prob="0.995">
            <gDNA_intron_boundary i_start="61918" i_stop="62706" i_length="789"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="62707" e_stop="63095" e_length="389"/>
          </exon>
          <intron i_serial="13" don_prob="0.747" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63096" i_stop="63205" i_length="110"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="63206" e_stop="63280" e_length="75"/>
          </exon>
          <intron i_serial="14" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63281" i_stop="63621" i_length="341"/>
          </intron>
          <exon e_serial="15" e_score="0.978">
            <gDNA_exon_boundary e_start="63622" e_stop="63889" e_length="268"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57646" stop="57988"/>
              <exon start="58874" stop="58986"/>
              <exon start="59094" stop="59391"/>
              <exon start="59659" stop="59758"/>
              <exon start="59848" stop="60114"/>
              <exon start="60608" stop="60685"/>
              <exon start="60788" stop="60892"/>
              <exon start="60999" stop="61048"/>
              <exon start="61143" stop="61242"/>
              <exon start="61359" stop="61457"/>
              <exon start="61540" stop="61653"/>
              <exon start="61758" stop="61917"/>
              <exon start="62707" stop="63095"/>
              <exon start="63206" stop="63280"/>
              <exon start="63622" stop="63889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321378" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGAGTGAGAGACAGAAAAAGATACTCTCTCCGCATCTATACATATAGAGAGGGAAAACCTATATTTATAGAGAGAGAAACTCTAGAGAGAGAAAAAGCCATGTATGTGTATATATAGGCTATATAGATTACAGTGAAAAAAACTTTCTTTTTCATTCCTCCATTATTCGTTCATTCTCTCAGCTCAAAGACCACAGAATTTTCAAGAAATTTATGACGTTTTGAAGTTAAAGTTTTGGTTTTTTTCCAGATTTTTCTCGGAATTTATGATTTCAGAGAAAAAAAATCAATGCAAAAGCTCCGTTTAATGGTCGATTTAGCTTGCGTTTTGTTAGGGTTCAG : TAGTGAAACTTGAGCTCGGATGGTTTTCCTGCGGAACAGCATAGATTGCTTTAAACGTTAAGAGCCACATTTCCTTCGTTATTCTTACATCCTCTTTGTTGGAAGGATGTCAG : AATGGTTGGATGCATATGATGACGTAAGAGAAAGAAGATCAGACTTCGAGGTTTCAGAGGATGAAAGACGACGTTCACGAATTGGTACTTTCAAGAAAAAGGCATTACATGCTTCAAACAAGTTCACCCACTCTCTGAAGAAAAGAGGAAAAAGGAAAGTGGACTACAGGTTCCCTTCAGTTTCAATAGAGGATGTACGTGATGCAAAAGAGGAGAATGCTGTCTGTGAATTGCGTCAAAGGCTGCTAGAGCGGAATTTGTTGCCATCCATACATGATGACTACCATACATTGTTGAG : ATTCTTAAAGGCAAGAGATCTCAATGTTGAGAAAACTATTCCGATGTGGGAAGAAATGCTTAACTGGAGGAAAGAGTTTGGAGCAGACACAATATTGCAG : GATTTTGACTTTGACGAGTTAGAAGAAGTATTGCAGTTTTACCCACAAGGATATCATGGGGTTGATAGGGAGGGAAGACCTGTTTATATCGAAAGGCTTGGACAAGCTAATCCGAACAAACTAATGCGGATAACCACAATTGATCGCTACATAAAATATCATGTCCAAGAATTTGAAAGGGCACTACATGAGAAGTTCCCTGCATGTTCTGTTGCTGCAAAGAAAAGAATCTGCACAACAACTACAATTTTGGATGTGCAAGGCTTA : GGGATTAAGAATTTCACAAGGACAGCTGCTAGTCTTTTGGCGGCCATGGCAAAAATTGATAATAGCTATTATCCTGAG : ACACTGCATCGGATGTTCATTGTCAATGCTGGCCCTGGCTTCAAAAAGATGCTCTGGCCAGCAGCTCAAAAATTTCTGGATGCAAAGACTATTGCAAAGATACAG : GTGCTCGATCCCAAATCCTTGGGTAAACTACATGAAGTTATTGACCCAAG : TCAATTGCCTGACTTTTTAGGTGGCTCTTGTACCTGTTCTGACGAGGGTGGTTGCCTCAGGTCTAACAAGGGTCCATGGAGTGATCCTGAAGTAATGAAG : CTTGTCTATAATGTAGAGGCAACAACTGTGAAGGAAATCTCTAGAAAACTTGGTGACCAAAGGAAAATTGAATCCTATATACAAATACGCCCTTCAAAG : GGAAGGAGCAGAGACACATCCACAAGTGATTCAGTATCGGATGCTGCTGACTTGTGTTCACCAATTAGAGGAAATAGTAGCTCAATTTTGAGGCTGACCCCAGTAGATGAAGAA : GCTAGGTCATCAGATTCAACAGCCTATTGTAGCTGTGATGATGAATTCAGCCTGGGTGATCGAGGTGTCACTAATGAGCATGGATTGCTGCATTGGCAAGAGCAGTCTCCTGTGAGCAGTCCAATGAATCGGTCCACTAATACATTGCCTCATTCTGGAG : GTACCTGGGCAATAAATTGGTGTGAAAGAATCCAAGAGAAGATTCTGAGCAGCTGTTTCAGTTGTTTGGAAAGGAAACTGATTCCTTTCATACTTAAACTCTTTGCATTTATTCGTAGTCTTCCCTTCGAGTACTGGAGGAAACGGACAAATGTTTTTCCGACTAATGCATTGGAAGAACGACAAGGGAGCAGTTCATCCATTAATGATGAAGCAGTTCAAAGAGTAAGGGAGATCCATCCATGCATGCAGCGTCTTCATAAATTGGAAAATTTATTGGAAGAAATAAACAAAAAGCCCGCTGAGATCCCAGCAGAGAAGGATCGAATGCTTCATCAGTCACTTAACAGGATCAAGTCTGTAGAAGTTGACCTAGAAAAAACAAAAAGG : GTATTGCATGCGACGGTATTGAAGCAACTTGAAATTACAGAGTTATTGGACAACCTAAAAGAGTCGAGCTTTCAT : AGGCGGAGATTGTGGTGTTGAATATTGTAAGGTTGGAGATTTGAGTACCAGGACAACGCGATGATAACCTTTTACTGCTAACTATGCTGCGAAGGGAGATGTTAGCTTATGCACCTCCAGCAGTGGTGACAAAGTTTTCCTTTTTTTTTTTTTTGTACAATGTCCTTTACAGAACATGCAGTTGTTACTGCAAGATGATGTTTGATTATACTGTACTGTTAAACATCTTGAAGAAAAGCTTAAAAGAAAGCCCTTTGAGGGTTTAGAG</gDNA_template>
            <first_frame> V  E  *  E  T  E  K  D  T  L  S  A  S  I  H  I  E  R  E  N  L  Y  L  *  R  E  K  L  *  R  E  K  K  P  C  M  C  I  Y  R  L  Y  R  L  Q  *  K  K  L  S  F  S  F  L  H  Y  S  F  I  L  S  A  Q  R  P  Q  N  F  Q  E  I  Y  D  V  L  K  L  K  F  W  F  F  S  R  F  F  S  E  F  M  I  S  E  K  K  N  Q  C  K  S  S  V  *  W  S  I  *  L  A  F  C  *  G  S   : V  V  K  L  E  L  G  W  F  S  C  G  T  A  *  I  A  L  N  V  K  S  H  I  S  F  V  I  L  T  S  S  L  L  E  G  C  Q  :  N  G  W  M  H  M  M  T  *  E  K  E  D  Q  T  S  R  F  Q  R  M  K  D  D  V  H  E  L  V  L  S  R  K  R  H  Y  M  L  Q  T  S  S  P  T  L  *  R  K  E  E  K  G  K  W  T  T  G  S  L  Q  F  Q  *  R  M  Y  V  M  Q  K  R  R  M  L  S  V  N  C  V  K  G  C  *  S  G  I  C  C  H  P  Y  M  M  T  T  I  H  C  *   : D  S  *  R  Q  E  I  S  M  L  R  K  L  F  R  C  G  K  K  C  L  T  G  G  K  S  L  E  Q  T  Q  Y  C  R :   I  L  T  L  T  S  *  K  K  Y  C  S  F  T  H  K  D  I  M  G  L  I  G  R  E  D  L  F  I  S  K  G  L  D  K  L  I  R  T  N  *  C  G  *  P  Q  L  I  A  T  *  N  I  M  S  K  N  L  K  G  H  Y  M  R  S  S  L  H  V  L  L  L  Q  R  K  E  S  A  Q  Q  L  Q  F  W  M  C  K  A  * :   G  L  R  I  S  Q  G  Q  L  L  V  F  W  R  P  W  Q  K  L  I  I  A  I  I  L  R :   H  C  I  G  C  S  L  S  M  L  A  L  A  S  K  R  C  S  G  Q  Q  L  K  N  F  W  M  Q  R  L  L  Q  R  Y  R :   C  S  I  P  N  P  W  V  N  Y  M  K  L  L  T  Q   : V  N  C  L  T  F  *  V  A  L  V  P  V  L  T  R  V  V  A  S  G  L  T  R  V  H  G  V  I  L  K  *  *  S :   L  S  I  M  *  R  Q  Q  L  *  R  K  S  L  E  N  L  V  T  K  G  K  L  N  P  I  Y  K  Y  A  L  Q  R :   E  G  A  E  T  H  P  Q  V  I  Q  Y  R  M  L  L  T  C  V  H  Q  L  E  E  I  V  A  Q  F  *  G  *  P  Q  *  M  K  K :   L  G  H  Q  I  Q  Q  P  I  V  A  V  M  M  N  S  A  W  V  I  E  V  S  L  M  S  M  D  C  C  I  G  K  S  S  L  L  *  A  V  Q  *  I  G  P  L  I  H  C  L  I  L  E  :  V  P  G  Q  *  I  G  V  K  E  S  K  R  R  F  *  A  A  V  S  V  V  W  K  G  N  *  F  L  S  Y  L  N  S  L  H  L  F  V  V  F  P  S  S  T  G  G  N  G  Q  M  F  F  R  L  M  H  W  K  N  D  K  G  A  V  H  P  L  M  M  K  Q  F  K  E  *  G  R  S  I  H  A  C  S  V  F  I  N  W  K  I  Y  W  K  K  *  T  K  S  P  L  R  S  Q  Q  R  R  I  E  C  F  I  S  H  L  T  G  S  S  L  *  K  L  T  *  K  K  Q  K  G :   Y  C  M  R  R  Y  *  S  N  L  K  L  Q  S  Y  W  T  T  *  K  S  R  A  F  I :   G  G  D  C  G  V  E  Y  C  K  V  G  D  L  S  T  R  T  T  R  *  *  P  F  T  A  N  Y  A  A  K  G  D  V  S  L  C  T  S  S  S  G  D  K  V  F  L  F  F  F  F  V  Q  C  P  L  Q  N  M  Q  L  L  L  Q  D  D  V  *  L  Y  C  T  V  K  H  L  E  E  K  L  K  R  K  P  F  E  G  L  E </first_frame>
            <second_frame>  L  S  E  R  Q  K  K  I  L  S  P  H  L  Y  I  *  R  G  K  T  Y  I  Y  R  E  R  N  S  R  E  R  K  S  H  V  C  V  Y  I  G  Y  I  D  Y  S  E  K  N  F  L  F  H  S  S  I  I  R  S  F  S  Q  L  K  D  H  R  I  F  K  K  F  M  T  F  *  S  *  S  F  G  F  F  P  D  F  S  R  N  L  *  F  Q  R  K  K  I  N  A  K  A  P  F  N  G  R  F  S  L  R  F  V  R  V  Q  :  *  *  N  L  S  S  D  G  F  P  A  E  Q  H  R  L  L  *  T  L  R  A  T  F  P  S  L  F  L  H  P  L  C  W  K  D  V  R :   M  V  G  C  I  *  *  R  K  R  K  K  I  R  L  R  G  F  R  G  *  K  T  T  F  T  N  W  Y  F  Q  E  K  G  I  T  C  F  K  Q  V  H  P  L  S  E  E  K  R  K  K  E  S  G  L  Q  V  P  F  S  F  N  R  G  C  T  *  C  K  R  G  E  C  C  L  *  I  A  S  K  A  A  R  A  E  F  V  A  I  H  T  *  *  L  P  Y  I  V  E  :  I  L  K  G  K  R  S  Q  C  *  E  N  Y  S  D  V  G  R  N  A  *  L  E  E  R  V  W  S  R  H  N  I  A   : G  F  *  L  *  R  V  R  R  S  I  A  V  L  P  T  R  I  S  W  G  *  *  G  G  K  T  C  L  Y  R  K  A  W  T  S  *  S  E  Q  T  N  A  D  N  H  N  *  S  L  H  K  I  S  C  P  R  I  *  K  G  T  T  *  E  V  P  C  M  F  C  C  C  K  E  K  N  L  H  N  N  Y  N  F  G  C  A  R  L   : R  D  *  E  F  H  K  D  S  C  *  S  F  G  G  H  G  K  N  *  *  *  L  L  S  *   : D  T  A  S  D  V  H  C  Q  C  W  P  W  L  Q  K  D  A  L  A  S  S  S  K  I  S  G  C  K  D  Y  C  K  D  T   : G  A  R  S  Q  I  L  G  *  T  T  *  S  Y  *  P  K  :  S  I  A  *  L  F  R  W  L  L  Y  L  F  *  R  G  W  L  P  Q  V  *  Q  G  S  M  E  *  S  *  S  N  E   : A  C  L  *  C  R  G  N  N  C  E  G  N  L  *  K  T  W  *  P  K  E  N  *  I  L  Y  T  N  T  P  F  K   : G  K  E  Q  R  H  I  H  K  *  F  S  I  G  C  C  *  L  V  F  T  N  *  R  K  *  *  L  N  F  E  A  D  P  S  R  *  R   : S  *  V  I  R  F  N  S  L  L  *  L  *  *  *  I  Q  P  G  *  S  R  C  H  *  *  A  W  I  A  A  L  A  R  A  V  S  C  E  Q  S  N  E  S  V  H  *  Y  I  A  S  F  W  R :   Y  L  G  N  K  L  V  *  K  N  P  R  E  D  S  E  Q  L  F  Q  L  F  G  K  E  T  D  S  F  H  T  *  T  L  C  I  Y  S  *  S  S  L  R  V  L  E  E  T  D  K  C  F  S  D  *  C  I  G  R  T  T  R  E  Q  F  I  H  *  *  *  S  S  S  K  S  K  G  D  P  S  M  H  A  A  S  S  *  I  G  K  F  I  G  R  N  K  Q  K  A  R  *  D  P  S  R  E  G  S  N  A  S  S  V  T  *  Q  D  Q  V  C  R  S  *  P  R  K  N  K  K   : G  I  A  C  D  G  I  E  A  T  *  N  Y  R  V  I  G  Q  P  K  R  V  E  L  S   : *  A  E  I  V  V  L  N  I  V  R  L  E  I  *  V  P  G  Q  R  D  D  N  L  L  L  L  T  M  L  R  R  E  M  L  A  Y  A  P  P  A  V  V  T  K  F  S  F  F  F  F  L  Y  N  V  L  Y  R  T  C  S  C  Y  C  K  M  M  F  D  Y  T  V  L  L  N  I  L  K  K  S  L  K  E  S  P  L  R  V  *   </second_frame>
            <third_frame>   *  V  R  D  R  K  R  Y  S  L  R  I  Y  T  Y  R  E  G  K  P  I  F  I  E  R  E  T  L  E  R  E  K  A  M  Y  V  Y  I  *  A  I  *  I  T  V  K  K  T  F  F  F  I  P  P  L  F  V  H  S  L  S  S  K  T  T  E  F  S  R  N  L  *  R  F  E  V  K  V  L  V  F  F  Q  I  F  L  G  I  Y  D  F  R  E  K  K  S  M  Q  K  L  R  L  M  V  D  L  A  C  V  L  L  G  F  S :   S  E  T  *  A  R  M  V  F  L  R  N  S  I  D  C  F  K  R  *  E  P  H  F  L  R  Y  S  Y  I  L  F  V  G  R  M  S   : E  W  L  D  A  Y  D  D  V  R  E  R  R  S  D  F  E  V  S  E  D  E  R  R  R  S  R  I  G  T  F  K  K  K  A  L  H  A  S  N  K  F  T  H  S  L  K  K  R  G  K  R  K  V  D  Y  R  F  P  S  V  S  I  E  D  V  R  D  A  K  E  E  N  A  V  C  E  L  R  Q  R  L  L  E  R  N  L  L  P  S  I  H  D  D  Y  H  T  L  L  R :   F  L  K  A  R  D  L  N  V  E  K  T  I  P  M  W  E  E  M  L  N  W  R  K  E  F  G  A  D  T  I  L  Q  :  D  F  D  F  D  E  L  E  E  V  L  Q  F  Y  P  Q  G  Y  H  G  V  D  R  E  G  R  P  V  Y  I  E  R  L  G  Q  A  N  P  N  K  L  M  R  I  T  T  I  D  R  Y  I  K  Y  H  V  Q  E  F  E  R  A  L  H  E  K  F  P  A  C  S  V  A  A  K  K  R  I  C  T  T  T  T  I  L  D  V  Q  G  L  :  G  I  K  N  F  T  R  T  A  A  S  L  L  A  A  M  A  K  I  D  N  S  Y  Y  P  E  :  T  L  H  R  M  F  I  V  N  A  G  P  G  F  K  K  M  L  W  P  A  A  Q  K  F  L  D  A  K  T  I  A  K  I  Q  :  V  L  D  P  K  S  L  G  K  L  H  E  V  I  D  P  S :   Q  L  P  D  F  L  G  G  S  C  T  C  S  D  E  G  G  C  L  R  S  N  K  G  P  W  S  D  P  E  V  M  K  :  L  V  Y  N  V  E  A  T  T  V  K  E  I  S  R  K  L  G  D  Q  R  K  I  E  S  Y  I  Q  I  R  P  S  K  :  G  R  S  R  D  T  S  T  S  D  S  V  S  D  A  A  D  L  C  S  P  I  R  G  N  S  S  S  I  L  R  L  T  P  V  D  E  E  :  A  R  S  S  D  S  T  A  Y  C  S  C  D  D  E  F  S  L  G  D  R  G  V  T  N  E  H  G  L  L  H  W  Q  E  Q  S  P  V  S  S  P  M  N  R  S  T  N  T  L  P  H  S  G   : G  T  W  A  I  N  W  C  E  R  I  Q  E  K  I  L  S  S  C  F  S  C  L  E  R  K  L  I  P  F  I  L  K  L  F  A  F  I  R  S  L  P  F  E  Y  W  R  K  R  T  N  V  F  P  T  N  A  L  E  E  R  Q  G  S  S  S  S  I  N  D  E  A  V  Q  R  V  R  E  I  H  P  C  M  Q  R  L  H  K  L  E  N  L  L  E  E  I  N  K  K  P  A  E  I  P  A  E  K  D  R  M  L  H  Q  S  L  N  R  I  K  S  V  E  V  D  L  E  K  T  K  R  :  V  L  H  A  T  V  L  K  Q  L  E  I  T  E  L  L  D  N  L  K  E  S  S  F  H  :  R  R  R  L  W  C  *  I  L  *  G  W  R  F  E  Y  Q  D  N  A  M  I  T  F  Y  C  *  L  C  C  E  G  R  C  *  L  M  H  L  Q  Q  W  *  Q  S  F  P  F  F  F  F  C  T  M  S  F  T  E  H  A  V  V  T  A  R  *  C  L  I  I  L  Y  C  *  T  S  *  R  K  A  *  K  K  A  L  *  G  F  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58935" stop="58986"/>
                    <exon start="59094" stop="59391"/>
                    <exon start="59659" stop="59758"/>
                    <exon start="59848" stop="60114"/>
                    <exon start="60608" stop="60685"/>
                    <exon start="60788" stop="60892"/>
                    <exon start="60999" stop="61048"/>
                    <exon start="61143" stop="61242"/>
                    <exon start="61359" stop="61457"/>
                    <exon start="61540" stop="61653"/>
                    <exon start="61758" stop="61917"/>
                    <exon start="62707" stop="63095"/>
                    <exon start="63206" stop="63280"/>
                    <exon start="63622" stop="63642"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1905</number_coding_nucleotides>
                  <number_encoded_amino_acids>635</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPHFLRYSYILFVGRMSEWLDAYDDVRERRSDFEVSEDERRRSRIGTFKKKALHASNKFTHSLKKRGKRKVDYRFPSVSIEDVRDAKEENAVCELRQRLLERNLLPSIHDDYHTLLRFLKARDLNVEKTIPMWEEMLNWRKEFGADTILQDFDFDELEEVLQFYPQGYHGVDREGRPVYIERLGQANPNKLMRITTIDRYIKYHVQEFERALHEKFPACSVAAKKRICTTTTILDVQGLGIKNFTRTAASLLAAMAKIDNSYYPETLHRMFIVNAGPGFKKMLWPAAQKFLDAKTIAKIQVLDPKSLGKLHEVIDPSQLPDFLGGSCTCSDEGGCLRSNKGPWSDPEVMKLVYNVEATTVKEISRKLGDQRKIESYIQIRPSKGRSRDTSTSDSVSDAADLCSPIRGNSSSILRLTPVDEEARSSDSTAYCSCDDEFSLGDRGVTNEHGLLHWQEQSPVSSPMNRSTNTLPHSGGTWAINWCERIQEKILSSCFSCLERKLIPFILKLFAFIRSLPFEYWRKRTNVFPTNALEERQGSSSSINDEAVQRVREIHPCMQRLHKLENLLEEINKKPAEIPAEKDRMLHQSLNRIKSVEVDLEKTKRVLHATVLKQLEITELLDNLKESSFHRRRLWC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63666" stop="63887"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPGQRDDNLLLLTMLRREMLAYAPPAVVTKFSFFFFLYNVLYRTCSCYCKMMFDYTVLLNILKKSLKESPLRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="64757" PGL_stop="67545"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64757" e_stop="65177"/>
            <exon e_start="65263" e_stop="65319"/>
            <exon e_start="66938" e_stop="67545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.918" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64757" e_stop="65177" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65178" i_stop="65262" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65263" e_stop="65319" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.899" acc_prob="0.918">
            <gDNA_intron_boundary i_start="65320" i_stop="66937" i_length="1618"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="66938" e_stop="67545" e_length="608"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64757" stop="65177"/>
              <exon start="65263" stop="65319"/>
              <exon start="66938" stop="67545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317637" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCATGACAATTTACGCGTAGAACGGCGCTAGCTGTAGATGCTGTACCCACTCCATTTATTTTTTCTTTCTTATTATATGCTTTTAATAATTTTATGTCGTTATTAAACTCAAAATATTTTCTATTTTCTATTTCCAATATGAACTCAAACTTACTGTAAACAATTAGCTGGCAAGAACAGAGATAACCTTTGTTCAAAGGGAAAGAGAACAGATAGATCTCTTTCTATTTCTGTTTTTTTCTCAAAGATCACTTTTTTTCTGGTTCTTTGTTGAAATCTTCTTCCAAGAACTCATCTTTTAGCTTTTATATTCTGATATTTTAGCTCATTTTGCTATAATGGGGTGCAGATATTGTTTTTCTTGTATTTTTCTACTGTTTTCTTTCTTCATTTCAGCTTCAGCTTCAGCTTATTTATCAG : ATGGGATTTTTGTTAATGAAGGTTTAACTGGGAGGAATCTACTTCAAGCCAAGAAAC : CTTGTCCTATCAGCTTCGAGTTTCAAAACTACACAGTGGTCACTACCCAATGCAAAGGACCAAAATACCCAGCCAAACAATGTTGTGAAGCCCTTGCGGAGTTTGCGTGTCCCTATTCAGAATTCGTGAATGATTTGACAACTGATTGTGCCTCTACCATGTTCAGCTACATTAACCTTCACGGGAAGTACCCACCTGGTCTTTTCGCCAGTGAGTGCAATAAAGACAAAAATGGGCTACCATGTCCTGATTCTGCATCATCCGAATCTGCCAGTGCTAATAATAGTCATATGAGCTGTAGACTATCACCGATCCTGATGATTGCAACAGCTCTTACGGGCTTCTTCTTGTTGCTTCTCTGAAGATCTCTTCAAGGTTTTGGCGTAGTTTCTGTATTCTTTATTGTCAAATATTGTTTGAACTCCGGATTTTCTTCTACCATGTTACCACTGATTAACGATCAACAAGAAACTCCTCCTCTTGTAATTCTTGATATATTACAACAGCAAACTGTTGATACTTGTGTATTGAAAATGACTCTCCTTGCTAAACCAAGGATCTGTTAAATATTATTTCACTTTGTTGTATTTTGAGCATGAACGATAGTA</gDNA_template>
            <first_frame> V  M  T  I  Y  A  *  N  G  A  S  C  R  C  C  T  H  S  I  Y  F  F  F  L  I  I  C  F  *  *  F  Y  V  V  I  K  L  K  I  F  S  I  F  Y  F  Q  Y  E  L  K  L  T  V  N  N  *  L  A  R  T  E  I  T  F  V  Q  R  E  R  E  Q  I  D  L  F  L  F  L  F  F  S  Q  R  S  L  F  F  W  F  F  V  E  I  F  F  Q  E  L  I  F  *  L  L  Y  S  D  I  L  A  H  F  A  I  M  G  C  R  Y  C  F  S  C  I  F  L  L  F  S  F  F  I  S  A  S  A  S  A  Y  L  S   : D  G  I  F  V  N  E  G  L  T  G  R  N  L  L  Q  A  K  K   : P  C  P  I  S  F  E  F  Q  N  Y  T  V  V  T  T  Q  C  K  G  P  K  Y  P  A  K  Q  C  C  E  A  L  A  E  F  A  C  P  Y  S  E  F  V  N  D  L  T  T  D  C  A  S  T  M  F  S  Y  I  N  L  H  G  K  Y  P  P  G  L  F  A  S  E  C  N  K  D  K  N  G  L  P  C  P  D  S  A  S  S  E  S  A  S  A  N  N  S  H  M  S  C  R  L  S  P  I  L  M  I  A  T  A  L  T  G  F  F  L  L  L  L  *  R  S  L  Q  G  F  G  V  V  S  V  F  F  I  V  K  Y  C  L  N  S  G  F  S  S  T  M  L  P  L  I  N  D  Q  Q  E  T  P  P  L  V  I  L  D  I  L  Q  Q  Q  T  V  D  T  C  V  L  K  M  T  L  L  A  K  P  R  I  C  *  I  L  F  H  F  V  V  F  *  A  *  T  I  V </first_frame>
            <second_frame>  S  *  Q  F  T  R  R  T  A  L  A  V  D  A  V  P  T  P  F  I  F  S  F  L  L  Y  A  F  N  N  F  M  S  L  L  N  S  K  Y  F  L  F  S  I  S  N  M  N  S  N  L  L  *  T  I  S  W  Q  E  Q  R  *  P  L  F  K  G  K  E  N  R  *  I  S  F  Y  F  C  F  F  L  K  D  H  F  F  S  G  S  L  L  K  S  S  S  K  N  S  S  F  S  F  Y  I  L  I  F  *  L  I  L  L  *  W  G  A  D  I  V  F  L  V  F  F  Y  C  F  L  S  S  F  Q  L  Q  L  Q  L  I  Y  Q  :  M  G  F  L  L  M  K  V  *  L  G  G  I  Y  F  K  P  R  N  :  L  V  L  S  A  S  S  F  K  T  T  Q  W  S  L  P  N  A  K  D  Q  N  T  Q  P  N  N  V  V  K  P  L  R  S  L  R  V  P  I  Q  N  S  *  M  I  *  Q  L  I  V  P  L  P  C  S  A  T  L  T  F  T  G  S  T  H  L  V  F  S  P  V  S  A  I  K  T  K  M  G  Y  H  V  L  I  L  H  H  P  N  L  P  V  L  I  I  V  I  *  A  V  D  Y  H  R  S  *  *  L  Q  Q  L  L  R  A  S  S  C  C  F  S  E  D  L  F  K  V  L  A  *  F  L  Y  S  L  L  S  N  I  V  *  T  P  D  F  L  L  P  C  Y  H  *  L  T  I  N  K  K  L  L  L  L  *  F  L  I  Y  Y  N  S  K  L  L  I  L  V  Y  *  K  *  L  S  L  L  N  Q  G  S  V  K  Y  Y  F  T  L  L  Y  F  E  H  E  R  *   </second_frame>
            <third_frame>   H  D  N  L  R  V  E  R  R  *  L  *  M  L  Y  P  L  H  L  F  F  L  S  Y  Y  M  L  L  I  I  L  C  R  Y  *  T  Q  N  I  F  Y  F  L  F  P  I  *  T  Q  T  Y  C  K  Q  L  A  G  K  N  R  D  N  L  C  S  K  G  K  R  T  D  R  S  L  S  I  S  V  F  F  S  K  I  T  F  F  L  V  L  C  *  N  L  L  P  R  T  H  L  L  A  F  I  F  *  Y  F  S  S  F  C  Y  N  G  V  Q  I  L  F  F  L  Y  F  S  T  V  F  F  L  H  F  S  F  S  F  S  L  F  I  R :   W  D  F  C  *  *  R  F  N  W  E  E  S  T  S  S  Q  E  T :   L  S  Y  Q  L  R  V  S  K  L  H  S  G  H  Y  P  M  Q  R  T  K  I  P  S  Q  T  M  L  *  S  P  C  G  V  C  V  S  L  F  R  I  R  E  *  F  D  N  *  L  C  L  Y  H  V  Q  L  H  *  P  S  R  E  V  P  T  W  S  F  R  Q  *  V  Q  *  R  Q  K  W  A  T  M  S  *  F  C  I  I  R  I  C  Q  C  *  *  *  S  Y  E  L  *  T  I  T  D  P  D  D  C  N  S  S  Y  G  L  L  L  V  A  S  L  K  I  S  S  R  F  W  R  S  F  C  I  L  Y  C  Q  I  L  F  E  L  R  I  F  F  Y  H  V  T  T  D  *  R  S  T  R  N  S  S  S  C  N  S  *  Y  I  T  T  A  N  C  *  Y  L  C  I  E  N  D  S  P  C  *  T  K  D  L  L  N  I  I  S  L  C  C  I  L  S  M  N  D  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65060" stop="65177"/>
                    <exon start="65263" stop="65319"/>
                    <exon start="66938" stop="67299"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYSDILAHFAIMGCRYCFSCIFLLFSFFISASASAYLSDGIFVNEGLTGRNLLQAKKPCPISFEFQNYTVVTTQCKGPKYPAKQCCEALAEFACPYSEFVNDLTTDCASTMFSYINLHGKYPPGLFASECNKDKNGLPCPDSASSESASANNSHMSCRLSPILMIATALTGFFLLLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67300" stop="67503"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSLQGFGVVSVFFIVKYCLNSGFSSTMLPLINDQQETPPLVILDILQQQTVDTCVLKMTLLAKPRIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="76082" PGL_stop="69819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76082" e_stop="75611"/>
            <exon e_start="75438" e_stop="75353"/>
            <exon e_start="75181" e_stop="75111"/>
            <exon e_start="74948" e_stop="74881"/>
            <exon e_start="74320" e_stop="74259"/>
            <exon e_start="73931" e_stop="73834"/>
            <exon e_start="72997" e_stop="72916"/>
            <exon e_start="72458" e_stop="72316"/>
            <exon e_start="71617" e_stop="71469"/>
            <exon e_start="71028" e_stop="70895"/>
            <exon e_start="70721" e_stop="70603"/>
            <exon e_start="70195" e_stop="69819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.541" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.822" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76082" e_stop="75611" e_length="472"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.891">
            <gDNA_intron_boundary i_start="75610" i_stop="75439" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75438" e_stop="75353" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.948">
            <gDNA_intron_boundary i_start="75352" i_stop="75182" i_length="171"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75181" e_stop="75111" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.924" acc_prob="0.541">
            <gDNA_intron_boundary i_start="75110" i_stop="74949" i_length="162"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74948" e_stop="74881" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.965">
            <gDNA_intron_boundary i_start="74880" i_stop="74321" i_length="560"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74320" e_stop="74259" e_length="62"/>
          </exon>
          <intron i_serial="5" don_prob="0.822" acc_prob="0.857">
            <gDNA_intron_boundary i_start="74258" i_stop="73932" i_length="327"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73931" e_stop="73834" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="73833" i_stop="72998" i_length="836"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="72997" e_stop="72916" e_length="82"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.973">
            <gDNA_intron_boundary i_start="72915" i_stop="72459" i_length="457"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="72458" e_stop="72316" e_length="143"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.909">
            <gDNA_intron_boundary i_start="72315" i_stop="71618" i_length="698"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="71617" e_stop="71469" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.936" acc_prob="0.965">
            <gDNA_intron_boundary i_start="71468" i_stop="71029" i_length="440"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="71028" e_stop="70895" e_length="134"/>
          </exon>
          <intron i_serial="10" don_prob="0.986" acc_prob="0.830">
            <gDNA_intron_boundary i_start="70894" i_stop="70722" i_length="173"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="70721" e_stop="70603" e_length="119"/>
          </exon>
          <intron i_serial="11" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="70602" i_stop="70196" i_length="407"/>
          </intron>
          <exon e_serial="12" e_score="0.995">
            <gDNA_exon_boundary e_start="70195" e_stop="69819" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76082" stop="75611"/>
              <exon start="75438" stop="75353"/>
              <exon start="75181" stop="75111"/>
              <exon start="74948" stop="74881"/>
              <exon start="74320" stop="74259"/>
              <exon start="73931" stop="73834"/>
              <exon start="72997" stop="72916"/>
              <exon start="72458" stop="72316"/>
              <exon start="71617" stop="71469"/>
              <exon start="71028" stop="70895"/>
              <exon start="70721" stop="70603"/>
              <exon start="70195" stop="69819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGCTCAAATCAGTGTGTGTTTGCAAACACGAGTTTCAGTTTCATGAAGAATGAGTGACTATTCAGCTAAAAACTGTTAGACCCTCTCCCATTTCATGACTGGAGCCGTGCCACAACAACCATGGCTATGTTGTTGCGCAAGGTATGGGAATCCGTATCTACTCGTTCCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAG : GACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGATG : GTGGGTCTGGCTATTGCAAATTTGGTTGGAGTAAGTATAGTGCTCCGTCAGGGAGATCAGCGACATTTTTG : GAGTTTGGCAACATTGAATCTCCAATGTATTCTAGATTGAGACACTTCTTTTCAACGATATACACCAG : GATGCAGGTGAAAACTTCAACACAGCCGATCATTGTGTCCATTCCGATTTGCCATTATGATG : ATACTGAATCTGATAAAGCAGCTAGAACGCAGTTAAAAGACGCGATCCATTCTGCATTATTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAG : GCTGTTTTAGCTTTATTTGCTGCAAGGAAAGTTTCAGGAATAGTAGTCAACATTGGGTTTAACCAGACATCTATTGTTCCAA : TTCTCTACGGTAAAGTCATGCACCAAGTAGGTGTGGAAGTTGTGGGAATTGGAGCATTGAAGCTTACAGGATTCCTTAAGGAGCAGATGCAACAGAAGAATATTTATTTTGGGTCACTTTACACTGTGCGGACTCTGAAAGAG : AACCTTTGTTATATTGCACTTGATTATGAAGCTGAACTATCCAAAGATACCAACGCATCTTTTCAGATCGGGTCTGAAGGTTGCTTTACACTTTCAGAAGAGCGCTTTAAAACAGGAGAGATTTTGTTCCAGCCTCGCATTGCAGGAGT : GCGTGCTATGGGTTTACAGAATGCTGTGGCGCTGTGCATGGAGCACTGCCATGACGCTGAATTAATGGTTGATGATAGCTGGTACAAAACAGTAGTTTTGGCTGGGGGAAGTGCATGTTTGCCTGGATTAGCAG : AAAGATTAGAGAAGGAAGTGTGTGAACTTCTTCCTCCATGCATGAGTAATGGAATCAGAGTACTTCCTCCCCCATATGGCGTAGATTCTGCTTGGTATGGGGCTAAGCTGATTGGCAAT : TTGAGCACCTTCCCCAGTTCCTGGTGTGTGATGAAAAAGCAATTTCGTCATAGGTCGAGACGCAAGTTTATGTGGTGATTACTGTTGCAGTGGCACTGCAGGTGGTATTGCCAAAGATCAAGAGTTTTGATGTGCCTCGTGGCTGAAGATCAACTATTGCATCAATGATTAGATCATTTGTTAAAGATATAAATATAAGGCTATTTATACATCAAGTGTAAGACTAATTTATGTCGTTCAGTCATGCGGATCTGCTAAGCATATGATGTACAAAATCTTAGATTATTGAGGTAGTTCCAAATGGAGTGAATATCTGTAAGTTGGACTTCTAGACTTATAATAAAGGAGCACCTTTTTCAGGTTATGTGTTAATACAA</gDNA_template>
            <first_frame> V  A  Q  I  S  V  C  L  Q  T  R  V  S  V  S  *  R  M  S  D  Y  S  A  K  N  C  *  T  L  S  H  F  M  T  G  A  V  P  Q  Q  P  W  L  C  C  C  A  R  Y  G  N  P  Y  L  L  V  P  L  R  A  I  P  P  Q  L  R  S  R  L  S  I  P  W  I  G  S  T  R  *  *  C  I  Y  R  R  R  P  P  E  N  L  I  G  F  R  *  I  F  S  F  K  F  *  R  F  *  G  Q  K  S  L  L  S  *  L  L  Y  V  N  P  G  N  T  L  F  P  I  I  A  Y  G  F  T  F  F  R  I  T  M  S  L  G  I  L  L  F  S  L  K  L  T  *  D  L  D  L  L   : G  R  F  Q  I  Q  Y  Q  N  C  H  S  *  V  F  M  V  N  V  L  K  C  P  V  L  L  L  L  M  :  V  G  L  A  I  A  N  L  V  G  V  S  I  V  L  R  Q  G  D  Q  R  H  F  W :   S  L  A  T  L  N  L  Q  C  I  L  D  *  D  T  S  F  Q  R  Y  T  P   : G  C  R  *  K  L  Q  H  S  R  S  L  C  P  F  R  F  A  I  M  M  :  I  L  N  L  I  K  Q  L  E  R  S  *  K  T  R  S  I  L  H  Y  L  T  *  M  F  L  L  F  V  L  S  T  R :   L  F  *  L  Y  L  L  Q  G  K  F  Q  E  *  *  S  T  L  G  L  T  R  H  L  L  F  Q  :  F  S  T  V  K  S  C  T  K  *  V  W  K  L  W  E  L  E  H  *  S  L  Q  D  S  L  R  S  R  C  N  R  R  I  F  I  L  G  H  F  T  L  C  G  L  *  K  R :   T  F  V  I  L  H  L  I  M  K  L  N  Y  P  K  I  P  T  H  L  F  R  S  G  L  K  V  A  L  H  F  Q  K  S  A  L  K  Q  E  R  F  C  S  S  L  A  L  Q  E   : C  V  L  W  V  Y  R  M  L  W  R  C  A  W  S  T  A  M  T  L  N  *  W  L  M  I  A  G  T  K  Q  *  F  W  L  G  E  V  H  V  C  L  D  *  Q  :  K  D  *  R  R  K  C  V  N  F  F  L  H  A  *  V  M  E  S  E  Y  F  L  P  H  M  A  *  I  L  L  G  M  G  L  S  *  L  A  I :   *  A  P  S  P  V  P  G  V  *  *  K  S  N  F  V  I  G  R  D  A  S  L  C  G  D  Y  C  C  S  G  T  A  G  G  I  A  K  D  Q  E  F  *  C  A  S  W  L  K  I  N  Y  C  I  N  D  *  I  I  C  *  R  Y  K  Y  K  A  I  Y  T  S  S  V  R  L  I  Y  V  V  Q  S  C  G  S  A  K  H  M  M  Y  K  I  L  D  Y  *  G  S  S  K  W  S  E  Y  L  *  V  G  L  L  D  L  *  *  R  S  T  F  F  R  L  C  V  N  T  </first_frame>
            <second_frame>  L  L  K  S  V  C  V  C  K  H  E  F  Q  F  H  E  E  *  V  T  I  Q  L  K  T  V  R  P  S  P  I  S  *  L  E  P  C  H  N  N  H  G  Y  V  V  A  Q  G  M  G  I  R  I  Y  S  F  H  F  E  Q  F  H  L  N  F  D  L  D  C  Q  F  H  G  S  V  R  P  D  D  D  V  Y  T  D  G  V  H  R  R  I  *  S  D  S  V  R  Y  F  H  S  N  F  E  D  F  R  A  K  R  V  C  *  A  D  F  C  M  *  I  L  E  I  H  C  F  R  *  S  P  M  D  L  L  S  S  E  S  P  *  A  L  G  F  Y  F  F  L  *  N  S  L  E  I  W  T  S  *  :  D  V  S  K  F  S  T  R  I  V  I  H  E  Y  L  W  S  T  C  S  S  A  R  C  Y  Y  Y  *  W :   W  V  W  L  L  Q  I  W  L  E  *  V  *  C  S  V  R  E  I  S  D  I  F   : G  V  W  Q  H  *  I  S  N  V  F  *  I  E  T  L  L  F  N  D  I  H  Q  :  D  A  G  E  N  F  N  T  A  D  H  C  V  H  S  D  L  P  L  *  * :   Y  *  I  *  *  S  S  *  N  A  V  K  R  R  D  P  F  C  I  I  *  H  E  C  S  C  C  L  C  C  Q  P   : G  C  F  S  F  I  C  C  K  E  S  F  R  N  S  S  Q  H  W  V  *  P  D  I  Y  C  S  N :   S  L  R  *  S  H  A  P  S  R  C  G  S  C  G  N  W  S  I  E  A  Y  R  I  P  *  G  A  D  A  T  E  E  Y  L  F  W  V  T  L  H  C  A  D  S  E  R   : E  P  L  L  Y  C  T  *  L  *  S  *  T  I  Q  R  Y  Q  R  I  F  S  D  R  V  *  R  L  L  Y  T  F  R  R  A  L  *  N  R  R  D  F  V  P  A  S  H  C  R  S  :  A  C  Y  G  F  T  E  C  C  G  A  V  H  G  A  L  P  *  R  *  I  N  G  *  *  *  L  V  Q  N  S  S  F  G  W  G  K  C  M  F  A  W  I  S  R :   K  I  R  E  G  S  V  *  T  S  S  S  M  H  E  *  W  N  Q  S  T  S  S  P  I  W  R  R  F  C  L  V  W  G  *  A  D  W  Q   : F  E  H  L  P  Q  F  L  V  C  D  E  K  A  I  S  S  *  V  E  T  Q  V  Y  V  V  I  T  V  A  V  A  L  Q  V  V  L  P  K  I  K  S  F  D  V  P  R  G  *  R  S  T  I  A  S  M  I  R  S  F  V  K  D  I  N  I  R  L  F  I  H  Q  V  *  D  *  F  M  S  F  S  H  A  D  L  L  S  I  *  C  T  K  S  *  I  I  E  V  V  P  N  G  V  N  I  C  K  L  D  F  *  T  Y  N  K  G  A  P  F  S  G  Y  V  L  I  Q </second_frame>
            <third_frame>   C  S  N  Q  C  V  F  A  N  T  S  F  S  F  M  K  N  E  *  L  F  S  *  K  L  L  D  P  L  P  F  H  D  W  S  R  A  T  T  T  M  A  M  L  L  R  K  V  W  E  S  V  S  T  R  S  T  S  S  N  S  T  S  T  S  I  S  T  V  N  S  M  D  R  F  D  Q  M  M  M  Y  I  Q  T  A  S  T  G  E  F  D  R  I  P  L  D  I  F  I  Q  I  L  K  I  L  G  P  K  E  S  A  K  L  T  S  V  C  K  S  W  K  Y  I  V  S  D  N  R  L  W  I  Y  F  L  Q  N  H  H  E  P  W  D  S  T  F  F  S  E  T  H  L  R  S  G  P  L  R :   T  F  P  N  S  V  P  E  L  S  F  M  S  I  Y  G  Q  R  A  Q  V  P  G  A  I  I  I  D   : G  G  S  G  Y  C  K  F  G  W  S  K  Y  S  A  P  S  G  R  S  A  T  F  L  :  E  F  G  N  I  E  S  P  M  Y  S  R  L  R  H  F  F  S  T  I  Y  T  R :   M  Q  V  K  T  S  T  Q  P  I  I  V  S  I  P  I  C  H  Y  D   : D  T  E  S  D  K  A  A  R  T  Q  L  K  D  A  I  H  S  A  L  F  D  M  N  V  P  A  V  C  A  V  N  Q  :  A  V  L  A  L  F  A  A  R  K  V  S  G  I  V  V  N  I  G  F  N  Q  T  S  I  V  P   : I  L  Y  G  K  V  M  H  Q  V  G  V  E  V  V  G  I  G  A  L  K  L  T  G  F  L  K  E  Q  M  Q  Q  K  N  I  Y  F  G  S  L  Y  T  V  R  T  L  K  E  :  N  L  C  Y  I  A  L  D  Y  E  A  E  L  S  K  D  T  N  A  S  F  Q  I  G  S  E  G  C  F  T  L  S  E  E  R  F  K  T  G  E  I  L  F  Q  P  R  I  A  G  V :   R  A  M  G  L  Q  N  A  V  A  L  C  M  E  H  C  H  D  A  E  L  M  V  D  D  S  W  Y  K  T  V  V  L  A  G  G  S  A  C  L  P  G  L  A   : E  R  L  E  K  E  V  C  E  L  L  P  P  C  M  S  N  G  I  R  V  L  P  P  P  Y  G  V  D  S  A  W  Y  G  A  K  L  I  G  N  :  L  S  T  F  P  S  S  W  C  V  M  K  K  Q  F  R  H  R  S  R  R  K  F  M  W  *  L  L  L  Q  W  H  C  R  W  Y  C  Q  R  S  R  V  L  M  C  L  V  A  E  D  Q  L  L  H  Q  *  L  D  H  L  L  K  I  *  I  *  G  Y  L  Y  I  K  C  K  T  N  L  C  R  S  V  M  R  I  C  *  A  Y  D  V  Q  N  L  R  L  L  R  *  F  Q  M  E  *  I  S  V  S  W  T  S  R  L  I  I  K  E  H  L  F  Q  V  M  C  *  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76011" stop="75611"/>
                    <exon start="75438" stop="75353"/>
                    <exon start="75181" stop="75111"/>
                    <exon start="74948" stop="74881"/>
                    <exon start="74320" stop="74259"/>
                    <exon start="73931" stop="73834"/>
                    <exon start="72997" stop="72916"/>
                    <exon start="72458" stop="72316"/>
                    <exon start="71617" stop="71469"/>
                    <exon start="71028" stop="70895"/>
                    <exon start="70721" stop="70603"/>
                    <exon start="70195" stop="70118"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1488</number_coding_nucleotides>
                  <number_encoded_amino_acids>496</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLLDPLPFHDWSRATTTMAMLLRKVWESVSTRSTSSNSTSTSISTVNSMDRFDQMMMYIQTASTGEFDRIPLDIFIQILKILGPKESAKLTSVCKSWKYIVSDNRLWIYFLQNHHEPWDSTFFSETHLRSGPLRTFPNSVPELSFMSIYGQRAQVPGAIIIDGGSGYCKFGWSKYSAPSGRSATFLEFGNIESPMYSRLRHFFSTIYTRMQVKTSTQPIIVSIPICHYDDTESDKAARTQLKDAIHSALFDMNVPAVCAVNQAVLALFAARKVSGIVVNIGFNQTSIVPILYGKVMHQVGVEVVGIGALKLTGFLKEQMQQKNIYFGSLYTVRTLKENLCYIALDYEAELSKDTNASFQIGSEGCFTLSEERFKTGEILFQPRIAGVRAMGLQNAVALCMEHCHDAELMVDDSWYKTVVLAGGSACLPGLAERLEKEVCELLPPCMSNGIRVLPPPYGVDSAWYGAKLIGNLSTFPSSWCVMKKQFRHRSRRKFMW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75914" e_stop="75355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75914" e_stop="75355" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75914" stop="75355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCACTTCGAGCAATTCCACCTCAACTTCGATCTCGACTGTCAATTCCATGGATCGGTTCGACCAGATGATGATGTATATACAGACGGCGTCCACCGGAGAATTTGATCGGATTCCGTTAGATATTTTCATTCAAATTTTGAAGATTTTAGGGCCAAAAGAGTCTGCTAAGCTGACTTCTGTATGTAAATCCTGGAAATACATTGTTTCCGATAATCGCCTATGGATTTACTTTCTTCAGAATCACCATGAGCCTTGGGATTCTACTTTTTTCTCTGAAACTCACTTGAGATCTGGACCTCTTAGGTAAATTCCTTTTTACAGTTCTGCTTTTTGAATGTCAAATTAGGTGAACTTTCCAATTGGTTTAATGTAATTTAGCTGAACTAATTTGGGACGGAGGGAGTAGTAGATGAAAGAGTGAAGTATAGATGAGGATATCATGAGTAGCTGGTTTGATAAGGTGTATGATTTGTAGGACGTTTCCAAATTCAGTACCAGAATTGTCATTCATGAGTATTTATGGTCAACGTGCTCAAGTGCCCGGTGCTATTATTATTGA</gDNA_template>
            <first_frame> P  L  R  A  I  P  P  Q  L  R  S  R  L  S  I  P  W  I  G  S  T  R  *  *  C  I  Y  R  R  R  P  P  E  N  L  I  G  F  R  *  I  F  S  F  K  F  *  R  F  *  G  Q  K  S  L  L  S  *  L  L  Y  V  N  P  G  N  T  L  F  P  I  I  A  Y  G  F  T  F  F  R  I  T  M  S  L  G  I  L  L  F  S  L  K  L  T  *  D  L  D  L  L  G  K  F  L  F  T  V  L  L  F  E  C  Q  I  R  *  T  F  Q  L  V  *  C  N  L  A  E  L  I  W  D  G  G  S  S  R  *  K  S  E  V  *  M  R  I  S  *  V  A  G  L  I  R  C  M  I  C  R  T  F  P  N  S  V  P  E  L  S  F  M  S  I  Y  G  Q  R  A  Q  V  P  G  A  I  I  I   </first_frame>
            <second_frame>  H  F  E  Q  F  H  L  N  F  D  L  D  C  Q  F  H  G  S  V  R  P  D  D  D  V  Y  T  D  G  V  H  R  R  I  *  S  D  S  V  R  Y  F  H  S  N  F  E  D  F  R  A  K  R  V  C  *  A  D  F  C  M  *  I  L  E  I  H  C  F  R  *  S  P  M  D  L  L  S  S  E  S  P  *  A  L  G  F  Y  F  F  L  *  N  S  L  E  I  W  T  S  *  V  N  S  F  L  Q  F  C  F  L  N  V  K  L  G  E  L  S  N  W  F  N  V  I  *  L  N  *  F  G  T  E  G  V  V  D  E  R  V  K  Y  R  *  G  Y  H  E  *  L  V  *  *  G  V  *  F  V  G  R  F  Q  I  Q  Y  Q  N  C  H  S  *  V  F  M  V  N  V  L  K  C  P  V  L  L  L  L  </second_frame>
            <third_frame>   T  S  S  N  S  T  S  T  S  I  S  T  V  N  S  M  D  R  F  D  Q  M  M  M  Y  I  Q  T  A  S  T  G  E  F  D  R  I  P  L  D  I  F  I  Q  I  L  K  I  L  G  P  K  E  S  A  K  L  T  S  V  C  K  S  W  K  Y  I  V  S  D  N  R  L  W  I  Y  F  L  Q  N  H  H  E  P  W  D  S  T  F  F  S  E  T  H  L  R  S  G  P  L  R  *  I  P  F  Y  S  S  A  F  *  M  S  N  *  V  N  F  P  I  G  L  M  *  F  S  *  T  N  L  G  R  R  E  *  *  M  K  E  *  S  I  D  E  D  I  M  S  S  W  F  D  K  V  Y  D  L  *  D  V  S  K  F  S  T  R  I  V  I  H  E  Y  L  W  S  T  C  S  S  A  R  C  Y  Y  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75912" stop="75607"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSSNSTSTSISTVNSMDRFDQMMMYIQTASTGEFDRIPLDIFIQILKILGPKESAKLTSVCKSWKYIVSDNRLWIYFLQNHHEPWDSTFFSETHLRSGPLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="93591" PGL_stop="88644"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93591" e_stop="93492"/>
            <exon e_start="90773" e_stop="90767"/>
            <exon e_start="89243" e_stop="88644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.639" acc_prob="0.427" e_score="0.470"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.714"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.470">
            <gDNA_exon_boundary e_start="93591" e_stop="93492" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.639" acc_prob="0.427">
            <gDNA_intron_boundary i_start="93491" i_stop="90774" i_length="2718"/>
          </intron>
          <exon e_serial="2" e_score="0.714">
            <gDNA_exon_boundary e_start="90773" e_stop="90767" e_length="7"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90766" i_stop="89244" i_length="1523"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89243" e_stop="88644" e_length="600"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93591" stop="93492"/>
              <exon start="90773" stop="90767"/>
              <exon start="89243" stop="88644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338871" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAACGTGACAGTCAATTTTCCACACATTAGCAGTTTTAGAATGACTCTTCCTAATCCCTTCCCTCTCTTCCTCTTCTTCTTCTCATTTTCTCATATTA : TTAATTT : TACTAGTAATTCTTTGGCACAAAACCACATGAATTTCACATAAAATCAGTTAACAAAAACACATATAGTAAATATATTTTTGTTTGATATTCAGCCAAAGAAACTGGGATCATATCCATTGCTAGAAGTAGCAAGGATATAATAAGCAACAATATGTCCAATAGATCCCCAAGCAAGCACATCAACAATATTGAATCCAACTGGATCATTTGATTTTAACAAACTTATATATTCCTTAGCCCTAACATCTCCAGCTTCAAAGTGAGAAATTCCATTCTGAGATGGCACCTGTTTCGCTACATTTTCTCTCTGGAAATTGAAGAAAACGAACCTTCCAAGGAAAAGCGAAAGCCCAGTGCTCAAACTGATGACAACGGATGGATTGAGTTCAGCTTTCACAGCGAGATTTCGGGGTTTTTTGGTGATAGGTTTGAAGGCGATGGGTTTGTTGAGGAAGAGGGAAGAGTCGGTGGGTTTGTTGAGAGGTCTGAGACCTTGGAAAGTTGGTGCAGAAAACAGAGCTGATGCCATTTTTTGAGTTTGTTGTTTGATGAAATGCAATGCAAATTTGGGTGTGTTGAGGAGTATATGTGGTTATTG</gDNA_template>
            <first_frame> E  N  V  T  V  N  F  P  H  I  S  S  F  R  M  T  L  P  N  P  F  P  L  F  L  F  F  F  S  F  S  H  I   : I  N  F :   T  S  N  S  L  A  Q  N  H  M  N  F  T  *  N  Q  L  T  K  T  H  I  V  N  I  F  L  F  D  I  Q  P  K  K  L  G  S  Y  P  L  L  E  V  A  R  I  *  *  A  T  I  C  P  I  D  P  Q  A  S  T  S  T  I  L  N  P  T  G  S  F  D  F  N  K  L  I  Y  S  L  A  L  T  S  P  A  S  K  *  E  I  P  F  *  D  G  T  C  F  A  T  F  S  L  W  K  L  K  K  T  N  L  P  R  K  S  E  S  P  V  L  K  L  M  T  T  D  G  L  S  S  A  F  T  A  R  F  R  G  F  L  V  I  G  L  K  A  M  G  L  L  R  K  R  E  E  S  V  G  L  L  R  G  L  R  P  W  K  V  G  A  E  N  R  A  D  A  I  F  *  V  C  C  L  M  K  C  N  A  N  L  G  V  L  R  S  I  C  G  Y   </first_frame>
            <second_frame>  R  T  *  Q  S  I  F  H  T  L  A  V  L  E  *  L  F  L  I  P  S  L  S  S  S  S  S  S  H  F  L  I  L  :  L  I   : L  L  V  I  L  W  H  K  T  T  *  I  S  H  K  I  S  *  Q  K  H  I  *  *  I  Y  F  C  L  I  F  S  Q  R  N  W  D  H  I  H  C  *  K  *  Q  G  Y  N  K  Q  Q  Y  V  Q  *  I  P  K  Q  A  H  Q  Q  Y  *  I  Q  L  D  H  L  I  L  T  N  L  Y  I  P  *  P  *  H  L  Q  L  Q  S  E  K  F  H  S  E  M  A  P  V  S  L  H  F  L  S  G  N  *  R  K  R  T  F  Q  G  K  A  K  A  Q  C  S  N  *  *  Q  R  M  D  *  V  Q  L  S  Q  R  D  F  G  V  F  W  *  *  V  *  R  R  W  V  C  *  G  R  G  K  S  R  W  V  C  *  E  V  *  D  L  G  K  L  V  Q  K  T  E  L  M  P  F  F  E  F  V  V  *  *  N  A  M  Q  I  W  V  C  *  G  V  Y  V  V  I  </second_frame>
            <third_frame>   E  R  D  S  Q  F  S  T  H  *  Q  F  *  N  D  S  S  *  S  L  P  S  L  P  L  L  L  L  I  F  S  Y  Y :   *  F  :  Y  *  *  F  F  G  T  K  P  H  E  F  H  I  K  S  V  N  K  N  T  Y  S  K  Y  I  F  V  *  Y  S  A  K  E  T  G  I  I  S  I  A  R  S  S  K  D  I  I  S  N  N  M  S  N  R  S  P  S  K  H  I  N  N  I  E  S  N  W  I  I  *  F  *  Q  T  Y  I  F  L  S  P  N  I  S  S  F  K  V  R  N  S  I  L  R  W  H  L  F  R  Y  I  F  S  L  E  I  E  E  N  E  P  S  K  E  K  R  K  P  S  A  Q  T  D  D  N  G  W  I  E  F  S  F  H  S  E  I  S  G  F  F  G  D  R  F  E  G  D  G  F  V  E  E  E  G  R  V  G  G  F  V  E  R  S  E  T  L  E  S  W  C  R  K  Q  S  *  C  H  F  L  S  L  L  F  D  E  M  Q  C  K  F  G  C  V  E  E  Y  M  W  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89024" stop="88719"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTYIFLSPNISSFKVRNSILRWHLFRYIFSLEIEENEPSKEKRKPSAQTDDNGWIEFSFHSEISGFFGDRFEGDGFVEEEGRVGGFVERSETLESWCRKQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88963" stop="88706"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGTCFATFSLWKLKKTNLPRKSESPVLKLMTTDGLSSAFTARFRGFLVIGLKAMGLLRKREESVGLLRGLRPWKVGAENRADAIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="88644" PGL_stop="91894"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88644" e_stop="89245"/>
            <exon e_start="89814" e_stop="89825"/>
            <exon e_start="90112" e_stop="90133"/>
            <exon e_start="91828" e_stop="91894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.833"/>
          <exon-intron don_prob="0.000" acc_prob="0.682" e_score="0.682"/>
          <exon-only e_score="0.448"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="88644" e_stop="89245" e_length="602"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="89246" i_stop="89813" i_length="568"/>
          </intron>
          <exon e_serial="2" e_score="0.833">
            <gDNA_exon_boundary e_start="89814" e_stop="89825" e_length="12"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="89826" i_stop="90111" i_length="286"/>
          </intron>
          <exon e_serial="3" e_score="0.682">
            <gDNA_exon_boundary e_start="90112" e_stop="90133" e_length="22"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.682">
            <gDNA_intron_boundary i_start="90134" i_stop="91827" i_length="1694"/>
          </intron>
          <exon e_serial="4" e_score="0.448">
            <gDNA_exon_boundary e_start="91828" e_stop="91894" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88644" stop="89245"/>
              <exon start="89814" stop="89825"/>
              <exon start="90112" stop="90133"/>
              <exon start="91828" stop="91894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATAACCACATATACTCCTCAACACACCCAAATTTGCATTGCATTTCATCAAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACT : AAAAAATAAAAT : AATATATAAAGTAAAAATAATA : TAAAAAGCCAGCAAATGGAGAAAGTAGCCCTCAAACACAACCTAAATATATGTCACGGAGAAATCAA</gDNA_template>
            <first_frame> Q  *  P  H  I  L  L  N  T  P  K  F  A  L  H  F  I  K  Q  Q  T  Q  K  M  A  S  A  L  F  S  A  P  T  F  Q  G  L  R  P  L  N  K  P  T  D  S  S  L  F  L  N  K  P  I  A  F  K  P  I  T  K  K  P  R  N  L  A  V  K  A  E  L  N  P  S  V  V  I  S  L  S  T  G  L  S  L  F  L  G  R  F  V  F  F  N  F  Q  R  E  N  V  A  K  Q  V  P  S  Q  N  G  I  S  H  F  E  A  G  D  V  R  A  K  E  Y  I  S  L  L  K  S  N  D  P  V  G  F  N  I  V  D  V  L  A  W  G  S  I  G  H  I  V  A  Y  Y  I  L  A  T  S  S  N  G  Y  D  P  S  F  F  G  *  I  S  N  K  N  I  F  T  I  C  V  F  V  N  *  F  Y  V  K  F  M  W  F  C  A  K  E  L  L  V  L :   K  N  K  I :   I  Y  K  V  K  I  I  :  *  K  A  S  K  W  R  K  *  P  S  N  T  T  *  I  Y  V  T  E  K  S  </first_frame>
            <second_frame>  N  N  H  I  Y  S  S  T  H  P  N  L  H  C  I  S  S  N  N  K  L  K  K  W  H  Q  L  C  F  L  H  Q  L  S  K  V  S  D  L  S  T  N  P  P  T  L  P  S  S  S  T  N  P  S  P  S  N  L  S  P  K  N  P  E  I  S  L  *  K  L  N  S  I  H  P  L  S  S  V  *  A  L  G  F  R  F  S  L  E  G  S  F  S  S  I  S  R  E  K  M  *  R  N  R  C  H  L  R  M  E  F  L  T  L  K  L  E  M  L  G  L  R  N  I  *  V  C  *  N  Q  M  I  Q  L  D  S  I  L  L  M  C  L  L  G  D  L  L  D  I  L  L  L  I  I  S  L  L  L  L  A  M  D  M  I  P  V  S  L  A  E  Y  Q  T  K  I  Y  L  L  Y  V  F  L  L  T  D  F  M  *  N  S  C  G  F  V  P  K  N  Y  *  Y   : *  K  I  K   : *  Y  I  K  *  K  *  Y :   K  K  P  A  N  G  E  S  S  P  Q  T  Q  P  K  Y  M  S  R  R  N  Q </second_frame>
            <third_frame>   I  T  T  Y  T  P  Q  H  T  Q  I  C  I  A  F  H  Q  T  T  N  S  K  N  G  I  S  S  V  F  C  T  N  F  P  R  S  Q  T  S  Q  Q  T  H  R  L  F  P  L  P  Q  Q  T  H  R  L  Q  T  Y  H  Q  K  T  P  K  S  R  C  E  S  *  T  Q  S  I  R  C  H  Q  F  E  H  W  A  F  A  F  P  W  K  V  R  F  L  Q  F  P  E  R  K  C  S  E  T  G  A  I  S  E  W  N  F  S  L  *  S  W  R  C  *  G  *  G  I  Y  K  F  V  K  I  K  *  S  S  W  I  Q  Y  C  *  C  A  C  L  G  I  Y  W  T  Y  C  C  L  L  Y  P  C  Y  F  *  Q  W  I  *  S  Q  F  L  W  L  N  I  K  Q  K  Y  I  Y  Y  M  C  F  C  *  L  I  L  C  E  I  H  V  V  L  C  Q  R  I  T  S  T  :  K  K  *  N  :  N  I  *  S  K  N  N   : I  K  S  Q  Q  M  E  K  V  A  L  K  H  N  L  N  I  C  H  G  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88650" stop="89153"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHILLNTPKFALHFIKQQTQKMASALFSAPTFQGLRPLNKPTDSSLFLNKPIAFKPITKKPRNLAVKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVAKQVPSQNGISHFEAGDVRAKEYISLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="88695" e_stop="89290"/>
            <exon e_start="89814" e_stop="89825"/>
            <exon e_start="90112" e_stop="90153"/>
            <exon e_start="91210" e_stop="91241"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.833"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.571"/>
          <exon-only e_score="0.688"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88695" e_stop="89290" e_length="596"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="89291" i_stop="89813" i_length="523"/>
          </intron>
          <exon e_serial="2" e_score="0.833">
            <gDNA_exon_boundary e_start="89814" e_stop="89825" e_length="12"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="89826" i_stop="90111" i_length="286"/>
          </intron>
          <exon e_serial="3" e_score="0.571">
            <gDNA_exon_boundary e_start="90112" e_stop="90153" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90154" i_stop="91209" i_length="1056"/>
          </intron>
          <exon e_serial="4" e_score="0.688">
            <gDNA_exon_boundary e_start="91210" e_stop="91241" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88695" stop="89290"/>
              <exon start="89814" stop="89825"/>
              <exon start="90112" stop="90153"/>
              <exon start="91210" stop="91241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAACAAACTCAAAAAATGGCATCAGCTCTGTTTTCTGCACCAACTTTCCAAGGTCTCAGACCTCTCAACAAACCCACCGACTCTTCCCTCTTCCTCAACAAACCCATCGCCTTCAAACCTATCACCAAAAAACCCCGAAATCTCGCTGTGAAAGCTGAACTCAATCCATCCGTTGTCATCAGTTTGAGCACTGGGCTTTCGCTTTTCCTTGGAAGGTTCGTTTTCTTCAATTTCCAGAGAGAAAATGTAGCGAAACAGGTGCCATCTCAGAATGGAATTTCTCACTTTGAAGCTGGAGATGTTAGGGCTAAGGAATATATAAGTTTGTTAAAATCAAATGATCCAGTTGGATTCAATATTGTTGATGTGCTTGCTTGGGGATCTATTGGACATATTGTTGCTTATTATATCCTTGCTACTTCTAGCAATGGATATGATCCCAGTTTCTTTGGCTGAATATCAAACAAAAATATATTTACTATATGTGTTTTTGTTAACTGATTTTATGTGAAATTCATGTGGTTTTGTGCCAAAGAATTACTAGTACTATCTCTGTTTTCTTTTGCATTTGAATTCGACTATGCATCCAAAAA : AAAAAATAAAAT : AATATATAAAGTAAAAATAATAGTGGGGAATTTTGGAATGAC : CAATTTAATTCCACGAGTGAAGCTAAAAAAAA</gDNA_template>
            <first_frame> K  Q  Q  T  Q  K  M  A  S  A  L  F  S  A  P  T  F  Q  G  L  R  P  L  N  K  P  T  D  S  S  L  F  L  N  K  P  I  A  F  K  P  I  T  K  K  P  R  N  L  A  V  K  A  E  L  N  P  S  V  V  I  S  L  S  T  G  L  S  L  F  L  G  R  F  V  F  F  N  F  Q  R  E  N  V  A  K  Q  V  P  S  Q  N  G  I  S  H  F  E  A  G  D  V  R  A  K  E  Y  I  S  L  L  K  S  N  D  P  V  G  F  N  I  V  D  V  L  A  W  G  S  I  G  H  I  V  A  Y  Y  I  L  A  T  S  S  N  G  Y  D  P  S  F  F  G  *  I  S  N  K  N  I  F  T  I  C  V  F  V  N  *  F  Y  V  K  F  M  W  F  C  A  K  E  L  L  V  L  S  L  F  S  F  A  F  E  F  D  Y  A  S  K  K :   K  N  K  I :   I  Y  K  V  K  I  I  V  G  N  F  G  M  T :   N  L  I  P  R  V  K  L  K  K  </first_frame>
            <second_frame>  N  N  K  L  K  K  W  H  Q  L  C  F  L  H  Q  L  S  K  V  S  D  L  S  T  N  P  P  T  L  P  S  S  S  T  N  P  S  P  S  N  L  S  P  K  N  P  E  I  S  L  *  K  L  N  S  I  H  P  L  S  S  V  *  A  L  G  F  R  F  S  L  E  G  S  F  S  S  I  S  R  E  K  M  *  R  N  R  C  H  L  R  M  E  F  L  T  L  K  L  E  M  L  G  L  R  N  I  *  V  C  *  N  Q  M  I  Q  L  D  S  I  L  L  M  C  L  L  G  D  L  L  D  I  L  L  L  I  I  S  L  L  L  L  A  M  D  M  I  P  V  S  L  A  E  Y  Q  T  K  I  Y  L  L  Y  V  F  L  L  T  D  F  M  *  N  S  C  G  F  V  P  K  N  Y  *  Y  Y  L  C  F  L  L  H  L  N  S  T  M  H  P  K   : K  K  I  K   : *  Y  I  K  *  K  *  *  W  G  I  L  E  *   : P  I  *  F  H  E  *  S  *  K  K </second_frame>
            <third_frame>   T  T  N  S  K  N  G  I  S  S  V  F  C  T  N  F  P  R  S  Q  T  S  Q  Q  T  H  R  L  F  P  L  P  Q  Q  T  H  R  L  Q  T  Y  H  Q  K  T  P  K  S  R  C  E  S  *  T  Q  S  I  R  C  H  Q  F  E  H  W  A  F  A  F  P  W  K  V  R  F  L  Q  F  P  E  R  K  C  S  E  T  G  A  I  S  E  W  N  F  S  L  *  S  W  R  C  *  G  *  G  I  Y  K  F  V  K  I  K  *  S  S  W  I  Q  Y  C  *  C  A  C  L  G  I  Y  W  T  Y  C  C  L  L  Y  P  C  Y  F  *  Q  W  I  *  S  Q  F  L  W  L  N  I  K  Q  K  Y  I  Y  Y  M  C  F  C  *  L  I  L  C  E  I  H  V  V  L  C  Q  R  I  T  S  T  I  S  V  F  F  C  I  *  I  R  L  C  I  Q  K  :  K  K  *  N  :  N  I  *  S  K  N  N  S  G  E  F  W  N  D  :  Q  F  N  S  T  S  E  A  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88695" stop="89153"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQQTQKMASALFSAPTFQGLRPLNKPTDSSLFLNKPIAFKPITKKPRNLAVKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVAKQVPSQNGISHFEAGDVRAKEYISLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="99663" PGL_stop="95410"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99663" e_stop="99508"/>
            <exon e_start="98465" e_stop="98174"/>
            <exon e_start="96531" e_stop="95410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.943" e_score="0.994"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="99663" e_stop="99508" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.943">
            <gDNA_intron_boundary i_start="99507" i_stop="98466" i_length="1042"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98465" e_stop="98174" e_length="292"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="98173" i_stop="96532" i_length="1642"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="96531" e_stop="95410" e_length="1122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99663" stop="99508"/>
              <exon start="98465" stop="98174"/>
              <exon start="96531" stop="95410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99602" stop="99508"/>
              <exon start="98465" stop="98174"/>
              <exon start="96531" stop="96349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAGATAATATACAAATTGGCTAGAAACAATAAAGATAGTTGCAACAGTTCAGGCGGCTATTAATTTCCCAAATTTGTTCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAATTTCTCTTGGAAATCCAGCAGAATAATGAATGAAAAG : GGTGACTTTGCTACAAGTAATGGTACAAAAGGTGAAAGGTCAATGAACTATGATGAAGAATCCAGTGATGAAGCTCAGGACAGAGAAAGGCCAATTGGTGAGGAACTTGGGGCTGGTCTCGAGAGAGGGAATGATAGGGAGTCTGAAAATGTGTCAAAAGAAGATCTAGCTGCTGAATCTCCGTGGGATGTTAATGAAGAGAAGAGTGAGAATCACGGTTCATCCACTGATCACGAGCCTCTAACGGAATCTATCTTCAACTTCCATGCTGCTCAAGAAGCTCTTGCTAGTG : AAATTCAGAAATTCAAAGAAATAGGGAAAGATACTAACTTTGGTCATTCACTTGAGGATGTTGGTATACCTTCAAATTTCACGTCAGATGACTCAGATTTTCCTAGATCAAGCACATCCGTGCTGTCACAGAACAGAGATGGTGCTCAAAGTTCTCTTAACTCCTTGGAGTCTGAAGTGTATAGCCTAAAGCAGAATATATTACTGTTGCAAAACCAGGTTCAGGAGGCAGCTGACCTGGCTAAATCCAAGGAAGCAAGAGTTACTGAACTTGAAGCCATTTTAAGTAGTAGCTCAAAGAGTGAAGAAGAGACTACTGAAGGTGAGTTCGAGAGTCTCTTCAGACTGAAAATTGAAGCTGAAGTTCAGTATGTGGCATTGTCAACAACAGCACAAAAGTTGAGAAGTGCAGCAGTATATCAACTTACCCTCTTGGAAGAACAGAAGACACTAGCTTCAGAACAAGCACAGATGGTGCACGTGCTAGGAGATGCCGAAGCAAAGGCTGTAGTGCTCAAGACACAAACCAAGAAGTTGGAAACTTACTGTGAAGATTTAGCAAGCACTGCCGAAAAGCTAAAGCTACAGAAGAAAGTCTGTAAGTACAGTTCGTGTTTTTTCATACAGTTGGTGTTGTTGGCTGTTGTTGTTGGACTGTTTCTGATGCAGATATCTCCTGATCATGCTGAACTTGTACCCACCTAATGTTAGAGAAGTTTCTTTCTCTCTCTTTTTTTCTTCCACTCCCTATTATCAACATCGTCATCCTTCAATGTTGAAAGTTAGATTAGTTTGTTTTTTAGATGTCTATAGATAGCTGAAATACCTACTTCTCATTTTGCTGAGTCTGTATTCAAGGGTAATCATAGAAGATGATCCGTTTTTTGCTTCTGTAAAAGGCTGTGCACTTTGAAGTTTTTTAACCTGGTCTCATATCAATACGACTTTAGACATTTCTGTTCGTGTGTGATGAACTATGTAATGGTCTAATTGGATTGTTGGAGTTGCAGAAACCTATACAACTTCAGACATTTCGGTTTGAAGTTGAAGCAAAAATGGTATGCACATGAAACATTCAACCACATGGTTGTTGAAGCTCATGTAGAAAAGCAAGCCTGAACTT</gDNA_template>
            <first_frame> R  R  *  Y  T  N  W  L  E  T  I  K  I  V  A  T  V  Q  A  A  I  N  F  P  N  L  F  P  I  L  G  F  P  *  S  Q  F  S  S  N  F  S  W  K  S  S  R  I  M  N  E  K  :  G  D  F  A  T  S  N  G  T  K  G  E  R  S  M  N  Y  D  E  E  S  S  D  E  A  Q  D  R  E  R  P  I  G  E  E  L  G  A  G  L  E  R  G  N  D  R  E  S  E  N  V  S  K  E  D  L  A  A  E  S  P  W  D  V  N  E  E  K  S  E  N  H  G  S  S  T  D  H  E  P  L  T  E  S  I  F  N  F  H  A  A  Q  E  A  L  A  S   : E  I  Q  K  F  K  E  I  G  K  D  T  N  F  G  H  S  L  E  D  V  G  I  P  S  N  F  T  S  D  D  S  D  F  P  R  S  S  T  S  V  L  S  Q  N  R  D  G  A  Q  S  S  L  N  S  L  E  S  E  V  Y  S  L  K  Q  N  I  L  L  L  Q  N  Q  V  Q  E  A  A  D  L  A  K  S  K  E  A  R  V  T  E  L  E  A  I  L  S  S  S  S  K  S  E  E  E  T  T  E  G  E  F  E  S  L  F  R  L  K  I  E  A  E  V  Q  Y  V  A  L  S  T  T  A  Q  K  L  R  S  A  A  V  Y  Q  L  T  L  L  E  E  Q  K  T  L  A  S  E  Q  A  Q  M  V  H  V  L  G  D  A  E  A  K  A  V  V  L  K  T  Q  T  K  K  L  E  T  Y  C  E  D  L  A  S  T  A  E  K  L  K  L  Q  K  K  V  C  K  Y  S  S  C  F  F  I  Q  L  V  L  L  A  V  V  V  G  L  F  L  M  Q  I  S  P  D  H  A  E  L  V  P  T  *  C  *  R  S  F  F  L  S  L  F  F  F  H  S  L  L  S  T  S  S  S  F  N  V  E  S  *  I  S  L  F  F  R  C  L  *  I  A  E  I  P  T  S  H  F  A  E  S  V  F  K  G  N  H  R  R  *  S  V  F  C  F  C  K  R  L  C  T  L  K  F  F  N  L  V  S  Y  Q  Y  D  F  R  H  F  C  S  C  V  M  N  Y  V  M  V  *  L  D  C  W  S  C  R  N  L  Y  N  F  R  H  F  G  L  K  L  K  Q  K  W  Y  A  H  E  T  F  N  H  M  V  V  E  A  H  V  E  K  Q  A  *  T  </first_frame>
            <second_frame>  G  D  N  I  Q  I  G  *  K  Q  *  R  *  L  Q  Q  F  R  R  L  L  I  S  Q  I  C  S  Q  F  *  G  F  H  N  L  N  S  L  R  I  S  L  G  N  P  A  E  *  *  M  K  R :   V  T  L  L  Q  V  M  V  Q  K  V  K  G  Q  *  T  M  M  K  N  P  V  M  K  L  R  T  E  K  G  Q  L  V  R  N  L  G  L  V  S  R  E  G  M  I  G  S  L  K  M  C  Q  K  K  I  *  L  L  N  L  R  G  M  L  M  K  R  R  V  R  I  T  V  H  P  L  I  T  S  L  *  R  N  L  S  S  T  S  M  L  L  K  K  L  L  L  V  :  K  F  R  N  S  K  K  *  G  K  I  L  T  L  V  I  H  L  R  M  L  V  Y  L  Q  I  S  R  Q  M  T  Q  I  F  L  D  Q  A  H  P  C  C  H  R  T  E  M  V  L  K  V  L  L  T  P  W  S  L  K  C  I  A  *  S  R  I  Y  Y  C  C  K  T  R  F  R  R  Q  L  T  W  L  N  P  R  K  Q  E  L  L  N  L  K  P  F  *  V  V  A  Q  R  V  K  K  R  L  L  K  V  S  S  R  V  S  S  D  *  K  L  K  L  K  F  S  M  W  H  C  Q  Q  Q  H  K  S  *  E  V  Q  Q  Y  I  N  L  P  S  W  K  N  R  R  H  *  L  Q  N  K  H  R  W  C  T  C  *  E  M  P  K  Q  R  L  *  C  S  R  H  K  P  R  S  W  K  L  T  V  K  I  *  Q  A  L  P  K  S  *  S  Y  R  R  K  S  V  S  T  V  R  V  F  S  Y  S  W  C  C  W  L  L  L  L  D  C  F  *  C  R  Y  L  L  I  M  L  N  L  Y  P  P  N  V  R  E  V  S  F  S  L  F  F  S  S  T  P  Y  Y  Q  H  R  H  P  S  M  L  K  V  R  L  V  C  F  L  D  V  Y  R  *  L  K  Y  L  L  L  I  L  L  S  L  Y  S  R  V  I  I  E  D  D  P  F  F  A  S  V  K  G  C  A  L  *  S  F  L  T  W  S  H  I  N  T  T  L  D  I  S  V  R  V  *  *  T  M  *  W  S  N  W  I  V  G  V  A  E  T  Y  T  T  S  D  I  S  V  *  S  *  S  K  N  G  M  H  M  K  H  S  T  T  W  L  L  K  L  M  *  K  S  K  P  E  L </second_frame>
            <third_frame>   E  I  I  Y  K  L  A  R  N  N  K  D  S  C  N  S  S  G  G  Y  *  F  P  K  F  V  P  N  S  R  V  S  I  I  S  I  L  F  E  F  L  L  E  I  Q  Q  N  N  E  *  K   : G  *  L  C  Y  K  *  W  Y  K  R  *  K  V  N  E  L  *  *  R  I  Q  *  *  S  S  G  Q  R  K  A  N  W  *  G  T  W  G  W  S  R  E  R  E  *  *  G  V  *  K  C  V  K  R  R  S  S  C  *  I  S  V  G  C  *  *  R  E  E  *  E  S  R  F  I  H  *  S  R  A  S  N  G  I  Y  L  Q  L  P  C  C  S  R  S  S  C  *  * :   N  S  E  I  Q  R  N  R  E  R  Y  *  L  W  S  F  T  *  G  C  W  Y  T  F  K  F  H  V  R  *  L  R  F  S  *  I  K  H  I  R  A  V  T  E  Q  R  W  C  S  K  F  S  *  L  L  G  V  *  S  V  *  P  K  A  E  Y  I  T  V  A  K  P  G  S  G  G  S  *  P  G  *  I  Q  G  S  K  S  Y  *  T  *  S  H  F  K  *  *  L  K  E  *  R  R  D  Y  *  R  *  V  R  E  S  L  Q  T  E  N  *  S  *  S  S  V  C  G  I  V  N  N  S  T  K  V  E  K  C  S  S  I  S  T  Y  P  L  G  R  T  E  D  T  S  F  R  T  S  T  D  G  A  R  A  R  R  C  R  S  K  G  C  S  A  Q  D  T  N  Q  E  V  G  N  L  L  *  R  F  S  K  H  C  R  K  A  K  A  T  E  E  S  L  *  V  Q  F  V  F  F  H  T  V  G  V  V  G  C  C  C  W  T  V  S  D  A  D  I  S  *  S  C  *  T  C  T  H  L  M  L  E  K  F  L  S  L  S  F  F  L  P  L  P  I  I  N  I  V  I  L  Q  C  *  K  L  D  *  F  V  F  *  M  S  I  D  S  *  N  T  Y  F  S  F  C  *  V  C  I  Q  G  *  S  *  K  M  I  R  F  L  L  L  *  K  A  V  H  F  E  V  F  *  P  G  L  I  S  I  R  L  *  T  F  L  F  V  C  D  E  L  C  N  G  L  I  G  L  L  E  L  Q  K  P  I  Q  L  Q  T  F  R  F  E  V  E  A  K  M  V  C  T  *  N  I  Q  P  H  G  C  *  S  S  C  R  K  A  S  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99561" stop="99508"/>
                    <exon start="98465" stop="98174"/>
                    <exon start="96531" stop="95828"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1047</number_coding_nucleotides>
                  <number_encoded_amino_acids>349</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQFSSNFSWKSSRIMNEKGDFATSNGTKGERSMNYDEESSDEAQDRERPIGEELGAGLERGNDRESENVSKEDLAAESPWDVNEEKSENHGSSTDHEPLTESIFNFHAAQEALASEIQKFKEIGKDTNFGHSLEDVGIPSNFTSDDSDFPRSSTSVLSQNRDGAQSSLNSLESEVYSLKQNILLLQNQVQEAADLAKSKEARVTELEAILSSSSKSEEETTEGEFESLFRLKIEAEVQYVALSTTAQKLRSAAVYQLTLLEEQKTLASEQAQMVHVLGDAEAKAVVLKTQTKKLETYCEDLASTAEKLKLQKKVCKYSSCFFIQLVLLAVVVGLFLMQISPDHAELVPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="99604" e_stop="98817"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="99604" e_stop="98817" e_length="788"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99604" stop="98817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99596" stop="99055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336857" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTAATTTCCCAAATTTGTTCCCAATTCTAGGGTTTCCATAATCTCAATTCTCTTCGAATTTCTCTTGGAAATCCAGCAGAATAATGAATGAAAAGGTACGCCCAGTTACTTAATTGCTTCTCCATTTCCTAATTTTTTGCATCTGCAGTACAAGTTTTTACAATGAACGAATTCAATTTTGTTCAATATGATGATTTTTCAAGCTGCAAATTGTCGAAGCAATCATAATTGATTTTGTCGAGAAATTTTGTTTCAATTGTTATCCGTCAGCTGGAATGATGGTTGGTAGTTCTCGATCTTGATCTGGGTTCGTAAAAAAGGTTTAATTTTAATATATATTTGTCTCTAGTTATGGACTTGGAAGAACAAAATACAGCTAATAATAAGGAAATGATCACACCACCAATATTTGAAAATGCTAATCAAAGCAAGGTAGAAAGTAGTGATGGGTCTAGTCCTCCTGGGGATAATAGCAGTAATAATAATTTGGATGATGTGAAAGGCAAGGGAATTGACATTAAAGAGGTTGAGGATTATTCAACTCCCCTGGTGAAATCCTCTCCAATAACTAAGGGGTTTGGGTTGAAAAAATGGAAAAGGATGAAGCGGGATGCGCAGCGCCAGGATGGGGATAGTAGTGTTAACAGCGGTAAGCTGTTGAAACGGGGTTTGGCGAGTGAGTTTGCTAATGCAGAAAAACCTGCAACTTTTGCTGTGGGAAGGATCCAAAAAAGTGATGGATCTGTTTCATCAACGAATGCAGTATTCATGAATCCTGGAGTTCTG</gDNA_template>
            <first_frame> Y  *  F  P  K  F  V  P  N  S  R  V  S  I  I  S  I  L  F  E  F  L  L  E  I  Q  Q  N  N  E  *  K  G  T  P  S  Y  L  I  A  S  P  F  P  N  F  L  H  L  Q  Y  K  F  L  Q  *  T  N  S  I  L  F  N  M  M  I  F  Q  A  A  N  C  R  S  N  H  N  *  F  C  R  E  I  L  F  Q  L  L  S  V  S  W  N  D  G  W  *  F  S  I  L  I  W  V  R  K  K  G  L  I  L  I  Y  I  C  L  *  L  W  T  W  K  N  K  I  Q  L  I  I  R  K  *  S  H  H  Q  Y  L  K  M  L  I  K  A  R  *  K  V  V  M  G  L  V  L  L  G  I  I  A  V  I  I  I  W  M  M  *  K  A  R  E  L  T  L  K  R  L  R  I  I  Q  L  P  W  *  N  P  L  Q  *  L  R  G  L  G  *  K  N  G  K  G  *  S  G  M  R  S  A  R  M  G  I  V  V  L  T  A  V  S  C  *  N  G  V  W  R  V  S  L  L  M  Q  K  N  L  Q  L  L  L  W  E  G  S  K  K  V  M  D  L  F  H  Q  R  M  Q  Y  S  *  I  L  E  F   </first_frame>
            <second_frame>  I  N  F  P  N  L  F  P  I  L  G  F  P  *  S  Q  F  S  S  N  F  S  W  K  S  S  R  I  M  N  E  K  V  R  P  V  T  *  L  L  L  H  F  L  I  F  C  I  C  S  T  S  F  Y  N  E  R  I  Q  F  C  S  I  *  *  F  F  K  L  Q  I  V  E  A  I  I  I  D  F  V  E  K  F  C  F  N  C  Y  P  S  A  G  M  M  V  G  S  S  R  S  *  S  G  F  V  K  K  V  *  F  *  Y  I  F  V  S  S  Y  G  L  G  R  T  K  Y  S  *  *  *  G  N  D  H  T  T  N  I  *  K  C  *  S  K  Q  G  R  K  *  *  W  V  *  S  S  W  G  *  *  Q  *  *  *  F  G  *  C  E  R  Q  G  N  *  H  *  R  G  *  G  L  F  N  S  P  G  E  I  L  S  N  N  *  G  V  W  V  E  K  M  E  K  D  E  A  G  C  A  A  P  G  W  G  *  *  C  *  Q  R  *  A  V  E  T  G  F  G  E  *  V  C  *  C  R  K  T  C  N  F  C  C  G  K  D  P  K  K  *  W  I  C  F  I  N  E  C  S  I  H  E  S  W  S  S  </second_frame>
            <third_frame>   L  I  S  Q  I  C  S  Q  F  *  G  F  H  N  L  N  S  L  R  I  S  L  G  N  P  A  E  *  *  M  K  R  Y  A  Q  L  L  N  C  F  S  I  S  *  F  F  A  S  A  V  Q  V  F  T  M  N  E  F  N  F  V  Q  Y  D  D  F  S  S  C  K  L  S  K  Q  S  *  L  I  L  S  R  N  F  V  S  I  V  I  R  Q  L  E  *  W  L  V  V  L  D  L  D  L  G  S  *  K  R  F  N  F  N  I  Y  L  S  L  V  M  D  L  E  E  Q  N  T  A  N  N  K  E  M  I  T  P  P  I  F  E  N  A  N  Q  S  K  V  E  S  S  D  G  S  S  P  P  G  D  N  S  S  N  N  N  L  D  D  V  K  G  K  G  I  D  I  K  E  V  E  D  Y  S  T  P  L  V  K  S  S  P  I  T  K  G  F  G  L  K  K  W  K  R  M  K  R  D  A  Q  R  Q  D  G  D  S  S  V  N  S  G  K  L  L  K  R  G  L  A  S  E  F  A  N  A  E  K  P  A  T  F  A  V  G  R  I  Q  K  S  D  G  S  V  S  S  T  N  A  V  F  M  N  P  G  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99287" stop="98817"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRFNFNIYLSLVMDLEEQNTANNKEMITPPIFENANQSKVESSDGSSPPGDNSSNNNLDDVKGKGIDIKEVEDYSTPLVKSSPITKGFGLKKWKRMKRDAQRQDGDSSVNSGKLLKRGLASEFANAEKPATFAVGRIQKSDGSVSSTNAVFMNPGVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="114439" PGL_stop="113730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114439" e_stop="113730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114439" e_stop="113730" e_length="710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114439" stop="113730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332991" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGTACAGCCATCCCCTACATCTCCAGCCTCGTTTTTGTGTAAGAGCAGTGGCAGTGGATTGATGGGTGCCCCCTTTGGCAGACAAGACTATTTAGGTAGGGGCAACTTACATACTGTGCGAAATGGACCAAACGAGACATGTGATATGAAGAAGTTTGTAGCAACTCCCATCTCTCATTGGCAGAATGCAACTTCAGTTGGGCCAAATGCTGTCAGAGAAATTATTGTAATTGATGATTCTCCAGAAAACGAGGCTAATTCTCCATACACCATGAACTCAGGGAAAATGCAGATTAGCTCAGGCTATACCTCAAGGTTTGTGGATCTCTGTGAAAATAGACCGCGTGGTGAAACTGGAGCAGCTCAGAATGCAAATTTGCTTACTCAAGTGAATGAGCTTCCTGCTAAGACATGGAATGTCAACCCAGACGGTTGTAGTTTAGTTCATCCGAGCTCTTTCTCAGCTTCCTCATCACCTGCAGGTCCTTTTAGATCATCTTTATATTATTCTCCAGGTTTTTCATAACCAAGAAATCGTCTTTTACATCTTGACTGACAAAAGAAAACGCGGCAAAGTTGAGCAGATGAGTTTTTCTAGTTTGGGTTTTCGCTTTCATAGCGTTTGATGTTTACTCAAAACAGTACTGAAAGTTCCATAGATATATATAATATATATAAAGCAGTTTAATTACTGAAGCCAGTTGAAA</gDNA_template>
            <first_frame> T  S  T  A  I  P  Y  I  S  S  L  V  F  V  *  E  Q  W  Q  W  I  D  G  C  P  L  W  Q  T  R  L  F  R  *  G  Q  L  T  Y  C  A  K  W  T  K  R  D  M  *  Y  E  E  V  C  S  N  S  H  L  S  L  A  E  C  N  F  S  W  A  K  C  C  Q  R  N  Y  C  N  *  *  F  S  R  K  R  G  *  F  S  I  H  H  E  L  R  E  N  A  D  *  L  R  L  Y  L  K  V  C  G  S  L  *  K  *  T  A  W  *  N  W  S  S  S  E  C  K  F  A  Y  S  S  E  *  A  S  C  *  D  M  E  C  Q  P  R  R  L  *  F  S  S  S  E  L  F  L  S  F  L  I  T  C  R  S  F  *  I  I  F  I  L  F  S  R  F  F  I  T  K  K  S  S  F  T  S  *  L  T  K  E  N  A  A  K  L  S  R  *  V  F  L  V  W  V  F  A  F  I  A  F  D  V  Y  S  K  Q  Y  *  K  F  H  R  Y  I  *  Y  I  *  S  S  L  I  T  E  A  S  *   </first_frame>
            <second_frame>  Q  V  Q  P  S  P  T  S  P  A  S  F  L  C  K  S  S  G  S  G  L  M  G  A  P  F  G  R  Q  D  Y  L  G  R  G  N  L  H  T  V  R  N  G  P  N  E  T  C  D  M  K  K  F  V  A  T  P  I  S  H  W  Q  N  A  T  S  V  G  P  N  A  V  R  E  I  I  V  I  D  D  S  P  E  N  E  A  N  S  P  Y  T  M  N  S  G  K  M  Q  I  S  S  G  Y  T  S  R  F  V  D  L  C  E  N  R  P  R  G  E  T  G  A  A  Q  N  A  N  L  L  T  Q  V  N  E  L  P  A  K  T  W  N  V  N  P  D  G  C  S  L  V  H  P  S  S  F  S  A  S  S  S  P  A  G  P  F  R  S  S  L  Y  Y  S  P  G  F  S  *  P  R  N  R  L  L  H  L  D  *  Q  K  K  T  R  Q  S  *  A  D  E  F  F  *  F  G  F  S  L  S  *  R  L  M  F  T  Q  N  S  T  E  S  S  I  D  I  Y  N  I  Y  K  A  V  *  L  L  K  P  V  E  </second_frame>
            <third_frame>   K  Y  S  H  P  L  H  L  Q  P  R  F  C  V  R  A  V  A  V  D  *  W  V  P  P  L  A  D  K  T  I  *  V  G  A  T  Y  I  L  C  E  M  D  Q  T  R  H  V  I  *  R  S  L  *  Q  L  P  S  L  I  G  R  M  Q  L  Q  L  G  Q  M  L  S  E  K  L  L  *  L  M  I  L  Q  K  T  R  L  I  L  H  T  P  *  T  Q  G  K  C  R  L  A  Q  A  I  P  Q  G  L  W  I  S  V  K  I  D  R  V  V  K  L  E  Q  L  R  M  Q  I  C  L  L  K  *  M  S  F  L  L  R  H  G  M  S  T  Q  T  V  V  V  *  F  I  R  A  L  S  Q  L  P  H  H  L  Q  V  L  L  D  H  L  Y  I  I  L  Q  V  F  H  N  Q  E  I  V  F  Y  I  L  T  D  K  R  K  R  G  K  V  E  Q  M  S  F  S  S  L  G  F  R  F  H  S  V  *  C  L  L  K  T  V  L  K  V  P  *  I  Y  I  I  Y  I  K  Q  F  N  Y  *  S  Q  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114438" stop="113911"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVQPSPTSPASFLCKSSGSGLMGAPFGRQDYLGRGNLHTVRNGPNETCDMKKFVATPISHWQNATSVGPNAVREIIVIDDSPENEANSPYTMNSGKMQISSGYTSRFVDLCENRPRGETGAAQNANLLTQVNELPAKTWNVNPDGCSLVHPSSFSASSSPAGPFRSSLYYSPGFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="117277" PGL_stop="116192"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117277" e_stop="117198"/>
            <exon e_start="116808" e_stop="116192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.962"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="117277" e_stop="117198" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="117197" i_stop="116809" i_length="389"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="116808" e_stop="116192" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117277" stop="117198"/>
              <exon start="116808" stop="116192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGAAACATCACAACCTTCTGAAATCTGCTTCTCATACTAAAAAGTTTTGCTTGTCCAAGCCAGATCACTGTCCCAAG : ATTAAGAGTGGTCAAGAGAGCACCTTTTGTCCAAGAGAAAATGTTGACAAAATGGATTGCCTAAATAAGGACCTCAGATCTGCGGACCAGATGCTATCAAATGGATTGGCAACCATAAAACAATGGGCATGTTCAAAGAGAACTGGCCTCACAAGGAAGATCAGTGATAAGGACAATCATCAGCTTTCTGGCGCTGATATGTCGACTGGCGTGCAAAGTGACAATGATGTGTTGCCTCAGACTTATCCATTTAAAAAGAGAAGCGGTCTTGTGAAATCTCCAAGATCATCTGTTTGTTTGCCTGAGAGTAGCCAAAGAATGGGGAATATGCTACTTGATCAGCCTCAAGAAGAACGTAGCGAGGAACCACCTTCTCTACACAAGAAAGTGGTGGACTTTTCATCATCTCAATCTTCACTCCCATCTAACAAGAAGAGATCCCTAGTGTTACAAAGGTGCAAAGGAAAACATTTGAAGGTAGATGGCCATTCTGTGAACAATCATCCGAAAATGACTACAGGCCATGCACTTTCTGTGAAAAATGTGAGAGTTGGAAGAAACACAGATAACTACTCTGAGGTCAACTGTGAACAGTCCACCGCTCATCCATCATTCTC</gDNA_template>
            <first_frame> E  R  N  I  T  T  F  *  N  L  L  L  I  L  K  S  F  A  C  P  S  Q  I  T  V  P  R :   L  R  V  V  K  R  A  P  F  V  Q  E  K  M  L  T  K  W  I  A  *  I  R  T  S  D  L  R  T  R  C  Y  Q  M  D  W  Q  P  *  N  N  G  H  V  Q  R  E  L  A  S  Q  G  R  S  V  I  R  T  I  I  S  F  L  A  L  I  C  R  L  A  C  K  V  T  M  M  C  C  L  R  L  I  H  L  K  R  E  A  V  L  *  N  L  Q  D  H  L  F  V  C  L  R  V  A  K  E  W  G  I  C  Y  L  I  S  L  K  K  N  V  A  R  N  H  L  L  Y  T  R  K  W  W  T  F  H  H  L  N  L  H  S  H  L  T  R  R  D  P  *  C  Y  K  G  A  K  E  N  I  *  R  *  M  A  I  L  *  T  I  I  R  K  *  L  Q  A  M  H  F  L  *  K  M  *  E  L  E  E  T  Q  I  T  T  L  R  S  T  V  N  S  P  P  L  I  H  H  S  </first_frame>
            <second_frame>  K  E  T  S  Q  P  S  E  I  C  F  S  Y  *  K  V  L  L  V  Q  A  R  S  L  S  Q   : D  *  E  W  S  R  E  H  L  L  S  K  R  K  C  *  Q  N  G  L  P  K  *  G  P  Q  I  C  G  P  D  A  I  K  W  I  G  N  H  K  T  M  G  M  F  K  E  N  W  P  H  K  E  D  Q  *  *  G  Q  S  S  A  F  W  R  *  Y  V  D  W  R  A  K  *  Q  *  C  V  A  S  D  L  S  I  *  K  E  K  R  S  C  E  I  S  K  I  I  C  L  F  A  *  E  *  P  K  N  G  E  Y  A  T  *  S  A  S  R  R  T  *  R  G  T  T  F  S  T  Q  E  S  G  G  L  F  I  I  S  I  F  T  P  I  *  Q  E  E  I  P  S  V  T  K  V  Q  R  K  T  F  E  G  R  W  P  F  C  E  Q  S  S  E  N  D  Y  R  P  C  T  F  C  E  K  C  E  S  W  K  K  H  R  *  L  L  *  G  Q  L  *  T  V  H  R  S  S  I  I  L </second_frame>
            <third_frame>   K  K  H  H  N  L  L  K  S  A  S  H  T  K  K  F  C  L  S  K  P  D  H  C  P  K  :  I  K  S  G  Q  E  S  T  F  C  P  R  E  N  V  D  K  M  D  C  L  N  K  D  L  R  S  A  D  Q  M  L  S  N  G  L  A  T  I  K  Q  W  A  C  S  K  R  T  G  L  T  R  K  I  S  D  K  D  N  H  Q  L  S  G  A  D  M  S  T  G  V  Q  S  D  N  D  V  L  P  Q  T  Y  P  F  K  K  R  S  G  L  V  K  S  P  R  S  S  V  C  L  P  E  S  S  Q  R  M  G  N  M  L  L  D  Q  P  Q  E  E  R  S  E  E  P  P  S  L  H  K  K  V  V  D  F  S  S  S  Q  S  S  L  P  S  N  K  K  R  S  L  V  L  Q  R  C  K  G  K  H  L  K  V  D  G  H  S  V  N  N  H  P  K  M  T  T  G  H  A  L  S  V  K  N  V  R  V  G  R  N  T  D  N  Y  S  E  V  N  C  E  Q  S  T  A  H  P  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0309F18.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117275" stop="117198"/>
                    <exon start="116808" stop="116194"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKHHNLLKSASHTKKFCLSKPDHCPKIKSGQESTFCPRENVDKMDCLNKDLRSADQMLSNGLATIKQWACSKRTGLTRKISDKDNHQLSGADMSTGVQSDNDVLPQTYPFKKRSGLVKSPRSSVCLPESSQRMGNMLLDQPQEERSEEPPSLHKKVVDFSSSQSSLPSNKKRSLVLQRCKGKHLKVDGHSVNNHPKMTTGHALSVKNVRVGRNTDNYSEVNCEQSTAHPSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 36 chains have been computed
$ 
$ memory statistics:
$ 257432 bytes spliced alignments in total
$ 25 spliced alignments have been stored
$ 10297 bytes was the average size of a spliced alignment
$ 26728 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1670 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 46 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 23:47:10
-->
