<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 15:30:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324111" ref_strand="+" ref_description="SGN-E324111 [cTOC-3-J19]">
      <seq>cattcatttgagttggggccgggcttgagtaagaaattccaatcgcaaccgctgcaaaatgaacatcgaatcggagaaagagcaatttctgaaggaatttggaagctattatggttatgccaattcccccaaaaacattgatgaaattagagctactgaatttaagcgcttaaacgatacggtatacttggatcatgctggggcgactctctattccgagtctcaaatggaagctgtgtttaaggacctcaattctactctttatggaaatcctcatagccagagcacttgtagtttggctaccgaggacattgttgggaaagcacgccaacaggtccttagtttcttcaatgcatcaccaagagaatatagctgtatattcacttctggggcaacagctgcactaaagcttgtcggtgagacattcccatggagcagtaacaggagttttatgtactcaatggaaaatcataacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="7996" stop="9489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8296" g_stop="8471" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8472" i_stop="8548" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8549" g_stop="8647" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="275" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8648" i_stop="8758" i_length="111">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8759" g_stop="8817" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="334" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8818" i_stop="9045" i_length="228">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9046" g_stop="9189" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="478" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E324111" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8296" e_stop="8471"/>
          <exon e_start="8549" e_stop="8647"/>
          <exon e_start="8759" e_stop="8817"/>
          <exon e_start="9046" e_stop="9189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCATTTGAGTTTGTTCCGGGCTTGAGTAAGAAATTCCAATCGCAACCGCTGCAAAATGAACATCGAATCGGAGAAAGAGCAATTTCTGAAGGAATTTGGAAGCTATTATGGTTATGCCAATTCCCCCAAAAACATTGATGAAATTAGAGCTACTGAATTTAAGCGCTTAAACGGTAAGATTTTTCATCTTCCAATTTCAGAATTTTGTTGAAAAATTGTTCCGTTGACTTCACTATTTATTTACTTGTAGATACGGTATACTTGGATCATGCTGGGGCGACTCTCTATTCCGAGTCTCAAATGGAAGCTGTGTTTAAGGACCTCAATTCTACTCTTTATGGAAATCCTCGTATCCTTCCTATCACTTTTCTCTATGAACTTTCTTCAACATGTTTGATTCTGTATTTCTTCACCCTGCATAAATTTTTAGCTGATACCTTAATTCTGTGAAAAACAATAGATAGCCAGAGCACTTGTAGTTTGGCTACCGAGGACATTGTTGGGAAAGCACGCCAACAGGTGAACATCTTCTTCTGCACTATTTTTATTGCTTCTGTTGTCATCATAATCTCTGCATTAGTCCACAATGCTCTGGAAATGTATATTGATGTATGCTGCATTGATATTATCTAAATGCTAAGCTGATGAGAGTCACTGCACATATGTTCTGTCATATTCAGTATTTCACATGTGATAAAGTTTCTGTTGTAATACTTTCTCTTACCATTGAATCACGACTCTATCCAGGTCCTTAGTTTCTTCAATGCATCACCAAGAGAATATAGCTGTATATTCACTTCTGGGGCAACAGCTGCACTAAAGCTTGTCGGTGAGACATTCCCATGGAGCAGTAACAGCAGTTTTATGTACTCAATGGAGAATCATAACAGC</genome_strand>
        <mrna_strand>CATTCATTTGAGTTGGGGCCGGGCTTGAGTAAGAAATTCCAATCGCAACCGCTGCAAAATGAACATCGAATCGGAGAAAGAGCAATTTCTGAAGGAATTTGGAAGCTATTATGGTTATGCCAATTCCCCCAAAAACATTGATGAAATTAGAGCTACTGAATTTAAGCGCTTAAACG.............................................................................ATACGGTATACTTGGATCATGCTGGGGCGACTCTCTATTCCGAGTCTCAAATGGAAGCTGTGTTTAAGGACCTCAATTCTACTCTTTATGGAAATCCTC...............................................................................................................ATAGCCAGAGCACTTGTAGTTTGGCTACCGAGGACATTGTTGGGAAAGCACGCCAACAG....................................................................................................................................................................................................................................GTCCTTAGTTTCTTCAATGCATCACCAAGAGAATATAGCTGTATATTCACTTCTGGGGCAACAGCTGCACTAAAGCTTGTCGGTGAGACATTCCCATGGAGCAGTAACAGGAGTTTTATGTACTCAATGGAAAATCATAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747007" ref_strand="+" ref_description="SGN-E747007 [GI|22128582]">
      <seq>atgaacatcgaatcggagaaagagcaatttctgaaggaatttggaagctattatggttatgccaattcccccaaaaacattgatgaaattagagctactgaatttaagcgcttaaacgatacggtatacttggatcatgctggggcgactctctattccgagtctcaaatggaagctgtgtttaaggacctcaattctactctttatggaaatcctcatagccagagcacttgtagtttggctaccgaggacattgttgggaaagcacgccaacaggtccttagtttcttcaatgcatcaccaagagaatatagctgtatattcacttctggggcaacagctgcactaaagcttgtcggtgagacattcccatggagcagtaacagcagttttatgtactcaatggagaatcataacagcgtccttgggattagggaatatgctctcagtaaaggagctgctgcttttgcagttgacattgaagatacacatgttggtgaatcagaaagcccacagtctaacttaaaactaacacagcaccacattcagagaagaaatgaaggtggcgttctgaaagaagggatgacaggtaacacatacaacttgtttgcattcccatcagaatgcaatttttcaggtcgaaaattcgaccctaacctgattaagattatcaaagaagggtctgaaagaatcttagaaagctcccagtattccagaggttgctggttagttctgatagatgctgctaaaggatgtgctaccaatccaccaaatttatcaatgtttaaagcagactttgttgtgttctcattctacaagttatttggctatccaactggccttggagcactcattgttcgaaaggatgctgctaagctgatgaagaagacctactttagtggaggcacggtgactgcagctattgctgacgttgactttttcaaaagaagagaaggtgtagaggaattttttgaggatggaaccatttcattcttgagcataacagcaattcaacatgggttcaaaataattaatatgctaacgacatcttcgattttccggcatacaacatcaattgcagcatatgtgaggaataagcttttggcactgaagcatgaaaatggagaatttgtttgcacgctgtacgggttattatctagtgagatgggccccacagtttcattcaacatgaaaagaccagatggaacatggtatggataccgtgaggtggaaaaattggcaaccttggcaggaattcaactgcggacaggatgtttttgcaatcctggtgcttgtgctaaatatcttggtttgtcacacttggatcttctttcaaatattgaggctgggcatgtgtgctgggatgatcgtgacattttacatggaaaaccaactggagcagtcagagtatcttttggttacatgtcaacattcgaagatgccatgaaattcgtcaacttcgtggaaagtaattttgtgatatcatcttttaatcggtgtgcattgcagccaaggtccatctctctgccaattgaagggattgcagaagctgctgcacggcatttcctcacatctattactgtctatccaataaagtcttgtgcgggatttagtgtggatcagtggcctctaacatctactgggttattgcatgatcgtgaatggattctcaagagcacaaccggtgaaattcttacccaaaagaaggttccagaaatgtgctatatctccacgctgattgatctcaatttggggaaactgtttgtagagtcacctcgttgcaaggagaaattgcagattgaactcaaatccagctcactggtcactgaaagagatgaaatggatatccaaaatcatagatatgaagtcacaagttacaacaatgaggttgatatctggttcagcagggcgattgatcgaccttgcactctactaagaaattccgattcccagagtcactcctgcataaataagaacgggagtcctggcatgtgcagggatgttggtgctagattgaattttgttaatgaagcccaatttctgctgatatctgaagaaagcataaaggacctcaactctaggctgaaatctaatggacgaaggagaaatggtggacaagcagtacaagttggtgtaatgagatttcgacccaatcttgtagcatctagtggtgaaccatatgcagaagatggatggagcaatataaatattggaggcaaatattttatgtcattgggtggttgcaatcgttgccagatgatcaatataaatccagaggctggggaggtgcagaggtttactgaacctttggcaactttagcaggttacaggagagcaaaggggaaaataatgtttggcatactgctaagatatgagaataatacgaaaaccgagtcagatacatggattcgtgtgggagaagaaataattccaaatggagataggcattgattgtttttcgtggaagttcctatttgagacttgtaagtagtcacaacagaggtgatacaagtgttcaatattgtgaagcagcgcaaaaaacacttgctctagccaggtcaatacatcaaactgtactttgttgctgttctctatctgcaaaagagtatgttcttctaaaagaactcgctaagatcttcattctttgtaaccagtactattataagctaataaatacccaatcgtaatattaacttctttggggctgcgtatagttttatgtgtaagtttttagtttgtgtagtgactcggtgtgcaagtacaacccatggatgatgcaaaaatcctcaggacatcgccatgatcttattaacagtgctttctcgagagttgagaccaaacgggtggaaaagatagtgaacgttgaaagctttattcctctcaactatgaaggttaattatgaatgtacatgttaatacttagcaatattggtggaataatatgtttgtcattttgttttcactcttcgcaaaggaacaaagaatccattgctcaaatttcagaagtaaaaggatatactactatcaattatgtcttgactaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="8054" stop="63316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8354" g_stop="8471" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8472" i_stop="8548" i_length="77">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8549" g_stop="8647" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="217" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8648" i_stop="8758" i_length="111">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8759" g_stop="8817" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="276" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8818" i_stop="9045" i_length="228">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9046" g_stop="9206" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="437" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9207" i_stop="10089" i_length="883">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.490" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10090" g_stop="10241" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="589" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10242" i_stop="10530" i_length="289">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10531" g_stop="10657" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="716" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10658" i_stop="11186" i_length="529">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11187" g_stop="11289" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="819" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="11290" i_stop="11412" i_length="123">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="11413" g_stop="11458" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="820" r_stop="865" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="11459" i_stop="11734" i_length="276">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="11735" g_stop="11773" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="866" r_stop="904" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="11774" i_stop="11852" i_length="79">
            <donor d_prob="0.901" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="11853" g_stop="12009" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="905" r_stop="1061" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="12010" i_stop="12711" i_length="702">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="12712" g_stop="12799" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1062" r_stop="1149" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="12800" i_stop="13137" i_length="338">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="13138" g_stop="13254" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1150" r_stop="1266" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="13255" i_stop="14133" i_length="879">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="14134" g_stop="14211" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1267" r_stop="1344" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="14212" i_stop="14300" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.766" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="14301" g_stop="14402" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1345" r_stop="1446" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="14403" i_stop="15151" i_length="749">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.744" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="15152" g_stop="15242" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1447" r_stop="1537" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="15243" i_stop="15412" i_length="170">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="15413" g_stop="15517" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1538" r_stop="1642" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="15518" i_stop="15716" i_length="199">
            <donor d_prob="0.480" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="15717" g_stop="15781" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1643" r_stop="1707" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="15782" i_stop="16688" i_length="907">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="16689" g_stop="16840" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1708" r_stop="1859" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="18">
          <gDNA_intron_boundary i_start="16841" i_stop="18476" i_length="1636">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="19">
          <gDNA_exon_boundary g_start="18477" g_stop="18709" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1860" r_stop="2092" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="19">
          <gDNA_intron_boundary i_start="18710" i_stop="19236" i_length="527">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="20">
          <gDNA_exon_boundary g_start="19237" g_stop="19373" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="2093" r_stop="2229" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="20">
          <gDNA_intron_boundary i_start="19374" i_stop="19532" i_length="159">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="21">
          <gDNA_exon_boundary g_start="19533" g_stop="19643" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="2230" r_stop="2340" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="21">
          <gDNA_intron_boundary i_start="19644" i_stop="19736" i_length="93">
            <donor d_prob="0.201" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="22">
          <gDNA_exon_boundary g_start="19737" g_stop="20442" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="2341" r_stop="3046" r_length="706" r_score="0.999"/>
        </exon>
        <intron i_serial="22">
          <gDNA_intron_boundary i_start="20443" i_stop="20806" i_length="364">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="23">
          <gDNA_exon_boundary g_start="20807" g_stop="20846" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="3047" r_stop="3086" r_length="40" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E747007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>3086</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8354" e_stop="8471"/>
          <exon e_start="8549" e_stop="8647"/>
          <exon e_start="8759" e_stop="8817"/>
          <exon e_start="9046" e_stop="9206"/>
          <exon e_start="10090" e_stop="10241"/>
          <exon e_start="10531" e_stop="10657"/>
          <exon e_start="11187" e_stop="11289"/>
          <exon e_start="11413" e_stop="11458"/>
          <exon e_start="11735" e_stop="11773"/>
          <exon e_start="11853" e_stop="12009"/>
          <exon e_start="12712" e_stop="12799"/>
          <exon e_start="13138" e_stop="13254"/>
          <exon e_start="14134" e_stop="14211"/>
          <exon e_start="14301" e_stop="14402"/>
          <exon e_start="15152" e_stop="15242"/>
          <exon e_start="15413" e_stop="15517"/>
          <exon e_start="15717" e_stop="15781"/>
          <exon e_start="16689" e_stop="16840"/>
          <exon e_start="18477" e_stop="18709"/>
          <exon e_start="19237" e_stop="19373"/>
          <exon e_start="19533" e_stop="19643"/>
          <exon e_start="19737" e_stop="20442"/>
          <exon e_start="20807" e_stop="20846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAACATCGAATCGGAGAAAGAGCAATTTCTGAAGGAATTTGGAAGCTATTATGGTTATGCCAATTCCCCCAAAAACATTGATGAAATTAGAGCTACTGAATTTAAGCGCTTAAACGGTAAGATTTTTCATCTTCCAATTTCAGAATTTTGTTGAAAAATTGTTCCGTTGACTTCACTATTTATTTACTTGTAGATACGGTATACTTGGATCATGCTGGGGCGACTCTCTATTCCGAGTCTCAAATGGAAGCTGTGTTTAAGGACCTCAATTCTACTCTTTATGGAAATCCTCGTATCCTTCCTATCACTTTTCTCTATGAACTTTCTTCAACATGTTTGATTCTGTATTTCTTCACCCTGCATAAATTTTTAGCTGATACCTTAATTCTGTGAAAAACAATAGATAGCCAGAGCACTTGTAGTTTGGCTACCGAGGACATTGTTGGGAAAGCACGCCAACAGGTGAACATCTTCTTCTGCACTATTTTTATTGCTTCTGTTGTCATCATAATCTCTGCATTAGTCCACAATGCTCTGGAAATGTATATTGATGTATGCTGCATTGATATTATCTAAATGCTAAGCTGATGAGAGTCACTGCACATATGTTCTGTCATATTCAGTATTTCACATGTGATAAAGTTTCTGTTGTAATACTTTCTCTTACCATTGAATCACGACTCTATCCAGGTCCTTAGTTTCTTCAATGCATCACCAAGAGAATATAGCTGTATATTCACTTCTGGGGCAACAGCTGCACTAAAGCTTGTCGGTGAGACATTCCCATGGAGCAGTAACAGCAGTTTTATGTACTCAATGGAGAATCATAACAGCGTCCTTGGGATTAGGGAGTATCCTGAATGGATTAAACCTTTTCATCAAATTTTGTTACTTCTGCTGTCGATTACTTTATGAAAGCTTTCCTCTTTAGCAGTGTATTTAGTTTCTTAATCTACGGTACTACTTCCTGCTTCAAGTGCTACTCTTTTTCACTGAAATACCGGTCCACCTAATCAAAGGCTCCCGACGATTCTATAAATTATCAATATTTTCTTCATGAGGAAGGCATGAATCTTTCCGGCTTTATATTTCAGCAAATGATCGCATCTCTACCTGTCACTGCATCGGGACCATGCTATCTTTGGACATTTGAAAGAATTACCACGAATTGTATGTGTTATCGATGATGTTTCATATATGCAGACCTGATCTGTGGATACGTTCAACACTGCCATTGTTGCTCTTATCGACTGATGTTCTGATGCGTTTAATCATGGTGGTTCTTTTTGAAGTTCTATGATTCCATTCACTTCAAAATCACTTGTTCCACACTTGCTGCTGAAGTGAGGTGTAGAACTCTACTGTTTATCTCATGGATATGATTATACATGTTTCTGGTAGAATTCACTGTACCTCCAAGGGTAACTTTTTATTCTTGACAGATCCTAGTTCTATCTAACCAGCCACAAAATTTCTGTTCTTGTTATTGAAGTGAGACCAAAAATCAAGGACCCAATTCATCTCTAAGTTTGTGTACTATTATCTATGTGTTAATACTTGCTCCGTACGGATAAACCTATTAAGCCAGATAATTGGAAGAGAAAAAACCTTTTTACACAGTAGGAAGAGTTTGCAGAAACAGTTGAGTAGATGGAAGATTTTGCATGATTTTTGATCTTGGTTCATTTTAAATTTGTGTGTATCTCAAGTATTCTTTTCCTTAAGAGTTACTAGATATGCTCTCAGTAAAGGAGCTGCTGCTTTTGCAGTTGACATTGAAGATACACATGTTGGTGAATCAGAAAGCCCACAGTCTAACTTAAAACTAACACAGCACCACATTCAGAGAAGAAATGAAGGTGGCGTTCTGAAAGAAGGGATGACAGGTACCTTTTTATCAATAGTTTCATCAACTTCTACCTTCCACCCCCTTCCACCCACCAAGTCTATAAAGGTAGTTAGCACCTTCAACTCAAATTAGATGTTGTCTGAGTTAATTAAACCCCATCAATCAAGAGAGCCTGTATGACCTTATACCTGTTAGATGGATTATCTTTTTCCTTTTGTTAGTTTTAGAAGTGAAGTAGAAGCTGCTTCACTAATGAAGCACATATTACCAATGTCTTTATCAACTTCAACTCGTTGTAATCTGACACTGTAGTCTTCTTGTTACAGGTAACACATACAACTTGTTTGCATTCCCATCAGAATGCAATTTTTCAGGTCGAAAATTCGACCCTAACCTGATTAAGATTATCAAAGAAGGGTCTGAAAGAATCTTAGAAAGCTCCCAGTATTCCAGGTAAAAGAATAAAAAACTTCTCCAGTGATTGAGAATAGCCGAGGTGCTAAAATTCTGACATTTATCTGAATAGTACTTGTAAGATGTACTCCCAGTAAATCTATAAGAAAATAGACCCTCTTTCAAGCTTGGTTGAGATTTGAGAATAGATTTTAGTGCCTCAAACATCCACCAAAAAAGATATTTCTTTTTAGGCTGGTTCAAATTATGGGAGTATCTAATGATTTTGATATGTTTGACTACAAAAAATTTAGAACATGGCGCATTCCTTAAGTATAGTGGCGCAAAGAAGATTATTTGTTTGTTATAGCTACAAGAGAATATGTTACATTTTGAACAATGTATGCTGATTCAGTCAGGGTTTTGACTTGAAACATCCATTGGTCAACCTTTTGTCCTCAATGTGGTGCTATTCTTATCTCCTTAGCTGGCAAAGCTTGTTCATATATCTTCGAAAACTTTTTATATCTCCATCATTGAGTTGGTCTTGCGCAGATGGGCAGATATAAATTTTCTTTTCTGAATGCAGAGGTTGCTGGTTAGTTCTGATAGATGCTGCTAAAGGATGTGCTACCAATCCACCAAATTTATCAATGTTTAAAGCAGACTTTGTTGTGTTCTCATTCTACAAGGTACTTATATTTTGATACCTGCTGTTTAAGATTACAGGAGGTACTTATATCTCATACCTGCTGTTTTAAGATTATGACTAACATCACGGAGCTTGAAAAGAGTTTTATTTGTTTCTTGTTTAGTTATTTGGCTATCCAACTGGCCTTGGAGCACTCATTGTTCGAAAGGGTAAGCAGCTAAATAAGAAAGCCGATTTTTGTTGTGTTTCCTCACTTATTCTTGTTTAATTTTCTTCTTCGTGTAGTTTACTTCTGACTTGTTTCCCTCTCTGCCTCTATCCCTCTACTTCTCTGTTTATGGAGAGAATGTTGGGTGGAAATGGTGGCAAAGATACCTAGGTTTTTATGTTTTTTCTAGTTGTGTAACAAGATAGACTTATATTTCTCCCCTTTTTTCATCAATGTGAGAATTAACAAAATTTCCTGATCTCTTTCTATTGATCAGATGCTGCTAAGCTGATGAAGAAGACCTACTTTAGTGGAGGTTCTTTTTTAGTGCCTTCTCGTGTTATGATTATATAATTGAAAACTCTAGCAATTTAAGTTAACCTGGATTCTTCTAGGCACGGTGACTGCAGCTATTGCTGACGTTGACTTTTTCAAAAGAAGAGAAGGTGTAGAGGAATTTTTTGAGGATGGAACCATTTCATTCTTGAGCATAACAGCAATTCAACATGGGTTCAAAATAATTAATATGCTAACGACATCTTCGATTTTCCGGTAAGTGAGAGCTTCCTCTCTTTTTTTCGGGATAAGGTGAGAGCTTGCTTCTTTTGTGGGTGGAAGATTCTGAAATTGAATAATGATCAGAATTTTATTGAGATTGCACATATTTTGCTGTCATTACAGATGAACAGAGACATTATATCGTTCACACTAGTGATTAGATTTATTGCGCACTTTTCCGCTTATAGTCTCTTTTTATGATTTATCTAGTGAGTGAGTCCTTCTAATATTATTTGATTAATCCTGCTCATTGCTGCTTTGTAGATGTTGTCGATCTTTTATTTTTTTACTACATAGGTACTGCCAACCTTTTTATAACTAGATGTTACCACAAGTACTGAAATAAGTCAATTTTTGTTTGGCTATTAGGCTAATTATCTTTTGAGTGAACAAGAAAACTTTGTTCTAAAGGTGTAAAATTTTGGGATTTCAAAGTTCCTATGCCTTTTTTTGTCTTCGTTTGATTTGGCAGATAAATTCCTCTTTGTTTAGAGGATATATGGGCATAGTTTCCAGTATCTTTTTTGTGGGTAGAGAAACTAGTCATTCATTTCTGAATCATCTAATTTAGTTCCAACAGAAATATACCAAGAATTTTACAGAAACTGTTGGCCCTTTCTCTTTCTACCCCCCTTAATTGAAGTTGGAGCCTAATGAAAAAAACATGTTCTGAAATGTGCTTTTCTTTTCTGCAAGGCATACAACATCAATTGCAGCATATGTGAGGAATAAGCTTTTGGCACTGAAGCATGAAAATGGAGAATTTGTTTGCACGCTGTACGGGGTAAATATATCGAACATAGCATTCTCGTGACTGGTTTATGTTTTTGGAATTTGGTTGGAATTAGATTCTCGTGAAGAAATTTCTTTATGTCCTAGGCAAAGGCAAGTTTGTTACTGTTGCTCATTCGTGCAGTGGTGATGCAATGATTTTGTTTTTGGGTTGCTTTTTTTTTTGGGGTAGATTTTGATTTTACTCGCGACTTTTTCTATGGTATTCTGTCAGTTTATGAATTGTCTGGTTTGTTATGAAATTGTCCTATGGTTCCGAAGGTGACCAAGTTAATATGACTTTTGTTTTTTTGAGAATAGTAAGTTAAGTTAATATGACTTTTATCTCAGTTATTATCTAGTGAGATGGGCCCCACAGTTTCATTCAACATGAAAAGACCAGATGGAACATGGTATGGATACCGTGAGGTGGAAAAATTGGCAACCTTGGCAGGAATTCAACTGCGGGTAAGAGTTCAATGGTCATATTGTCTATGAAGTATGAATTTTGTTCTGTTTCCCTTGGGAGATGAGATGCTTGCTACTTTATTCTGTTGGAACATAACCCCAGAGCAGATTGATGCTGCTGTTTCTGATATAATGTGCTACTTTCACATGTTATCTTTTTTCAATGTCAAGGAGGATGATATGACTTCCAAGAGGTGTCTTTTTATGATTTATCATTTGTCTTCATTTATATCTGAATGCTTTGATATACTTATCTGGATTTATGAAGTTCTCCATTTAAACTTCTGTTAGCTTGTCTTTGATTTGTGAATTTTGGTCCTTCAGATGCATGGTCACTTACTCTTTTAACCGCCTTCACCACTGTTAGATGCGTTAACTGCCACATTTAGAGGAGTTTTTTAGTCTTCAGTTATTGCCCTCCACAATACGTGCAACTTTTTTACTTTTTGGAATGAGCAGATACCCCATCATGTAATAATCTATGGGAGACCAAATAAGGGATGACTTGCATCCGTACTAACACAATAAGGTCACTGTCTCCTTTTTATGTTTAAGCTTTTGTCCACAAATACCGAGGGTTGTTGTATACATTTGGTTATCAGTAAGCCTATTTGAATATGTAACATAATTTTGGAATAATAGTAAGTAATAACAAATTATCTTAGCTGGAATTGTCTGAGAAAGAGGAGTTTGCAATACAAGGAAATGTTAAATATTTTATGAGAAAGCCCCTAAAGAATAGTCTATCTTAATTCTTAAAGGAATGGAGGGAGGATTAGTCCACAACTTTTGAAACTGGTAATTGAATATCTCAGATATATAATGCTGTTATATGATATGACTAAATTCTTGCTTCTTTTTCCCTGTATTTTTGTATAGACAGGATGTTTTTGCAATCCTGGTGCTTGTGCTAAATATCTTGGTTTGTCACACTTGGATCTTCTTTCAAATATTGAGGTATGTGTTTCCTTTCCCCTCATTTTAATCTGTTACATGGGAAAAAGGGACCACCAATGGCAACAAATTCAAATTATCATTTCATTTAGGCTGGGCATGTGTGCTGGGATGATCGTGACATTTTACATGGAAAACCAACTGGAGCAGTCAGAGTATCTTTTGGTTACATGTCAACATTCGAAGATGCCATGGTAAGGGAACCCACCATTCCCAACCTAATTCCCAAAAAATGAAGTGTAGTTCTATATTTTTTATAGTACAACATGCTTCTTTCTTCAAGATTTTGATGTGCCAAATATTGAACGGTTGGAGTTAAAAATTTACATTTCAACTTAAACGTGGGGCAATCTCTTTATACCTAATTTGTCTTGGGCAATCCTCACTTCGTAAGCTAATTAAAGGTTGTGTTAAGCCTAACATGCACTTTCATAATAGAGAGAGAAAGGAAAATATGTAGCTTAATGGTCACATAGAACAATAATTGCCAACTTCCAATTTTTCACTTTCACTTGGCCATTAGACAGGCAAGCTGAAAGAGAGAAGGAATAAAGAACTAAAACAAAGATGATCTCTTTAGTTCTTCAAGTTTCTATCTGAAGAAAGAGCAACCTTCTAGTCATTTGGATATAAAAAGCTACAAGCTACTTTTCTTTTGACATGGTAAAGAATATATCTAAAACAGCAATATGATTTCTGAAAAAGCTAAATTGTTGAAAAACGGAATATGGTTTGCTACTCCTATTACTTTTTGGTTCTTTTCTATTTCTATATTTCCCTTTTCTGTTGTTTGTTTAGGATGTTGCTGGGCAGAAGCTTCAATTTCTATGAAGTTATCTTGTAATTGCCTGAATGATTGATTAGCAAACTAATCTTTGCTCTGGATGTTCCTCTGAGAGCTAGTCTTATTTACTACTTCATTCCGTTCTACTTGTCTATGCAGAAATTCGTCAACTTCGTGGAAAGTAATTTTGTGATATCATCTTTTAATCGGTGTGCATTGCAGCCAAGGTCCATCTCTCTGCCAATTGAAGGTCAACTTTTGTATCTTTCTACTATTAGGCATGCATTAAATCGATATGTTGAATTGGCTTCTTGTAGACCAGAAGTTGATTGCAAGTGTGGAAGTTTGTCATTTTAGTACCATAAAAGAAATTGTGCAAACTTGTTTAGTCAACCCATGCATTTCATTGACCAATTGCAGGGATTGCAGAAGCTGCTGCACGGCATTTCCTCACATCTATTACTGTCTATCCAATAAAGTCTTGTGCGGGATTTAGTGTGGATCAGTGGCCTCTAACATCTACTGGTAGCTATTCTGCTACATCTCATAGGAAAATTCAGTAGTTCAATTTTTATGGCACATATGATTTTGTCAAAATCAAGAGATATTTGCTCATTTCCATTGCATATAAGAAATTGATCCATGTTTTCTTTAGAATATCAAAGTATTTTGACTTTCAATGTATCATTCTTACATGTTGTCATTCCGTTCAATATGAATTTAGGGTTATTGCATGATCGTGAATGGATTCTCAAGAGCACAACCGGTGAAATTCTTACCCAAAAGAAGGTAGAATACTTTATAATTCACATCATGTGTGTTGATGCCTGTTATCCATGTGCAATGCGATGGTAAAACTACCTTCATTCACCCATTATAATTTAATTTAGTAAAGTGGAAAACATAGCATTGTTGTCTATCATTTGATCTACCCATCCTTCAATGTGTTTTGCTTTTAACCTTTTTAATCTCCTAGACAAGCCTTACTAATAATTGACTATTTTCTCAAAGTAGCATGCAACTTCTTAATGTGGGTTGTGTGCATTGTCAGGCTACATGAGGTCTTTTTTTCGACCTTCCCAATGAAATTATTTATTTTCTCTCTTTTCTTCTAATTCTTTTTTCTATTTGTTTGAGATCGAGGGGTAGTTGGTGTTTTCTAATTTGATTTAATGTATTTTAGCTTCTTTTTTGAAGCCTTACAATGCTCATTATATAATAGAATTGATTAGATGCCATCCTTTTTGTACAAGATATTCAACAATTCATGGTCTTAAAAAGAAGTTGAATAGCCTATAATCTGTACTACCAATAACATTTCAAGTCCTTTGAATAACTCTCCATTATCTCAATATATAAATCCTATTTTCTCCTGTGTTCCACTACTAACTTTGAAGTGTCTTAATCTCTACACTCCATGTTTTAACCTGTCATCTAATTTACTTATTTTTTGTTTTTCTCGAAAACATTCTTGAAAATATGCAAAGTGTCATGCTCTCGATTGGGATATAATCTCTACTTTTATATCTAGACATGTATTTTTGTATGAGAAGCAAGTTACTACGGAAGCTTATATCTTTGAAAGATAATTAATGATTATTCAAAATTTACTAGCTATTGCCTCTTAATTATTGTTTCCGATCCAGTGTTGATTACTTCTGCATCAATATCTAAGTCAGGTGTATTTGCGTTCTAGGTTCCAGAAATGTGCTATATCTCCACGCTGATTGATCTCAATTTGGGGAAACTGTTTGTAGAGTCACCTCGTTGCAAGGAGAAATTGCAGATTGAACTCAAATCCAGCTCACTGGTCACTGAAAGAGATGAAATGGATATCCAAAATCATAGGTTTGAACTTCATCTTCACTTCTTTCCTTTTGATATTAAATACTTAAAAGTAGCTACCTCTTAAAAAAATAAAAATAAAAAATCACGTGAATCAATATGTAGAGCTTTACAACTCAACAAAGAGATCCACATAGCCGTCAAAAAAAATTCAAACGGCTTTATGTACATACATTTACAGACATAGTATAGAATCTTATAGTACCTACATATTCTTAACTTGGGTGAGCATCTATGTTTTTTCAGACTATTTTATTTGGTCGTATGTGTAAGAGCCCAACTTTTCTTCTATTCTCGAGTTCAATAATTTTTCCTGTACCTATGTTACTCGGAATCTTTCAAAATGTCAAAGGGTGTGTGTCGGATTCTCCAAAGTATTGTATTTTTGGAGAATCCGACACGGGTGCAGCATCAAAAGTGAAGAGCTCGCTCAACTTAGTCCTGTAGCACTAAAACTTTGTATTTTGAAGAAACTTTTTTTTTGAGAAGGATTTGTATTTTGAAGCTTAAGTTGTTAAAACTTTGTGATCGTGTATCTGAACTGACTTAAACAATGTTGTGTTGCAGTTTCATATATGGCTACCATTAAGTGAAGGGTTCTTTCTTCACTTTTACAGTTGTACTTATTTTTTAATCAGAAAGGTGAAGTTTCATTAAGATAACACGGTTTACGTACAGTAGAAAAAGTTAGAAAGGAAAAATAGTGCTCCTTAAGTTTGGTCTAATATTTATGAAGAATTTTGTTTGTGGGCTTGCATGTGAGTTTCTAAGTTCGAACCACTTAGATGTAGTGGTTGAAAAGATGATTAGGGTATGTGCGTTGTACTGATGTAAGTTCTGTTGTTGACCGTCTGGTATGGTTGCCTTTAGTGAAGCATGAGAAGTTATAATTCTTGACAATGTTTGCCCTAATATTTTTGAACGGTGGTGTCCAGGCCAACTTGTGCGACCTGGACTGTTCCATTAGGTACCAACTGCCTCCCACCCAGCAACACTACTATCGGGTAACTTTGTCTACCAAGGCTTAGGCAGATAGGAAGAAATCACCTAGTGTTTCGTCTCTTCTGTGGTTTGAACCTTATCTCTAAGGTTGCACGCACTTCATTGACCACTAGGCCACACATTTCGACCTTCACTGTGTTTGCTTTTCAAAGATTGTACTCATTGTTTTCCTTGTATGTTGGAGACTATAATTATGTTCTTTGTCATGTAATAGAGTGTTTGATTAGGATAAAGTGGGTGTATTTCTCATCTGAACAAAGAAATAGTTTATGGAACTAACTGTTTTTAAAGCTTTGGCTCATTGTCGAGCTTCAAACTTCAATTTATTCGTTCCAAAGCAGATTTTAAACAGTTGTGGTTTAATCAGTTGCTTTATTATACTTCCCAAAAGACAAAACCAAGACAAGAAGAAACTAAAAAAGGAGTGAACAGTATTTTGAGAAGGATGTCATTATTTTAGTCTGCATGTTCTTAAAATAGCTACCGTTATCTGTGACTACTGTGGTAGTTCATGTGGAAATGAAAAAGAATCTAAAAAGAAGTGTAGTTCATGAATACAGTCTATGTAAGTGGTGTTTTTGAATAGCAGTATTATAGTAATGCTCAATCATTTTTCATGTCTTTTTGATTTGGGTAGATATGAAGTCACAAGTTACAACAATGAGGTTGATATCTGGTTCAGCAGGGCGATTGATCGACCTTGCACTCTACTAAGAAATTCCGATTCCCAGAGTCACTCCTGCATAAATAAGAACGGGAGTCCTGGCATGTGCAGGGATGTTGGTGCTAGATTGAATTTTGTTAATGAAGCCCAATTTCTGCTGATATCTGAAGAAAGCATAAAGGACCTCAACTCTAGGCTGAAATCTAGTATGTTTTCTTTTCTTTTCTCTTTGTTAGTAGTGAGCAAACTCTCTTTCTGGTATTGAGCTCTTCTGAAATAGGAATATAAGGAAACTAGAGAATGCACCCAATACAATTGGCCAATTTGAGGCTATTCCTCTGAGCTGAATGCATAACAACTTTTAAACCATGTCTATACAATATTAGTGCAATAACTTCTGTTCAGAGGATACAAATGCTTTGCATTACTTGAATCTATGTTAGACGTGGTGGTATTTCTGTTTTTAGAGGAGACTTGAGTTCAGAAGTCTTACCTGTAGTAGCATGGCTGTTGCGGCTGTAGGAGGATCTAAAAGGAATTAAAAGTAAATGTATTTGCTGTCTGTTCAGTCTTGTATAGTCCACTATACTTGAATTATTTTCCTGCATAAGTCACTTGTATCACTTAATATGCTTCCTCTGATGGTGGTTAGTGATTTTTACAGAAAGGTTTATGTATAAAGCAAATAGGTTCATCAAAAATTCATTCGACCTTTTTTCTTTAATCTTTTTAGATGGACGAAGGAGAAATGGTGGACAAGCAGTACAAGTTGGTGTAATGAGATTTCGACCCAATCTTGTAGCATCTAGTGGTGAACCATATGCAGAAGATGGATGGAGCAATATAAATATTGGAGGCAAATATTTTATGGTGAGTTCTAACTTCTAGCTCGTATAAAATCAAGATATGGGAACATGAAGTGACTGTACATTCTGTCCTAAAATTATAGATGAGTATTCTTGTATTCAGTAAGTCAACAGAGGTGCTAAAAGTTCCTCATGTGTTCATACTTAAATTGTTTAAGTGCAGTCATTGGGTGGTTGCAATCGTTGCCAGATGATCAATATAAATCCAGAGGCTGGGGAGGTGCAGAGGTTTACTGAACCTTTGGCAACTTTAGCAGGTTACAGGAGAGCAAAGGTTAGAACCCACCTAAAAATGAAGAAACCCCCCCAAAAAATGCAGTTTGCTTGCTTAGTTAATTGCTTCTTACCATATCTCCCTTGCAAACAGGGGAAAATAATGTTTGGCATACTGCTAAGATATGAGAATAATACGAAAACCGAGTCAGATACATGGATTCGTGTGGGAGAAGAAATAATTCCAAATGGAGATAGGCATTGATTGTTTTTCGTGGAAGTTCCTATTTGAGACTTGTAAGTAGTCACAACAGAGGTGATACAAGTGTTCAATATTGTGAAGCAGCGCAAAAAACACTTGCTCTAGCCAGGTCAATACATCAAACTGTACTTTGTTGCTGTTCTCTATCTGCAAAAGAGTATGTTCTTCTAAAAGAACTCGCTAAGATCTTCATTCTTTGTAACCAGTACTATTATAAGCTAATAAATACCCAATCGTAATATTAACTTCTTTGGGGCTGCGTATAGTTTTATGTGTAAGTTTTTAGTTTGTGTAGTGACTCGGTGTGCAAGTACAACCCATGGATGATGCAAAAATCCTCAGGACATCGCCATGATCTTATTAACAGTGCTTTCTCGAGAGTTGAGACCAAACGGGTGGAAAAGATAGTGAACGTTGAAAGCTTTATTCCTCTCAACTATGAAGGTTAATTATGAATGTACATGTTAATACTTAGCAATATTGGTGGAATAATATGTTTGTCATTTTGTTTTCACTCTTCGCAAAGGAACAAAGAATCCATTGCTCAAATTTCAGAAGTAAAAGGATATACTACTATCAATTATGTCTTGACTAAAGACTTTGACCTTTTCTTTATTTTCTCATTCCTTTATTGTGTTTTTTTGCGTCTCAGTTTTTATTCACTTCCGTAGATGTTTGACTTTCAGGTTGCTGTTTGGTACTAACTTTTCCCTGATTGGATATATATATGACAAATTTGATATTGGTTGGAAGTTGGAACCGTTCATTTGCTGCTTCTAATATGGACTACCCATTCTGCCATTACTAAGTAGCTGTGGTTTAGATTTTTTATTTGTTTTAAAATATATAATACATACAAATCTATCAGAATATAATGACTTTAATGGATTCTTCAAATTTAACTAAACAACGCAATTTTGTTTTGAGTTTGACAATCCTTTGGTCCAACCTAAAACGAGCAGAGTCAAAAAAAATATAGAGATATTATGAATAGGAGAAAAA</genome_strand>
        <mrna_strand>ATGAACATCGAATCGGAGAAAGAGCAATTTCTGAAGGAATTTGGAAGCTATTATGGTTATGCCAATTCCCCCAAAAACATTGATGAAATTAGAGCTACTGAATTTAAGCGCTTAAACG.............................................................................ATACGGTATACTTGGATCATGCTGGGGCGACTCTCTATTCCGAGTCTCAAATGGAAGCTGTGTTTAAGGACCTCAATTCTACTCTTTATGGAAATCCTC...............................................................................................................ATAGCCAGAGCACTTGTAGTTTGGCTACCGAGGACATTGTTGGGAAAGCACGCCAACAG....................................................................................................................................................................................................................................GTCCTTAGTTTCTTCAATGCATCACCAAGAGAATATAGCTGTATATTCACTTCTGGGGCAACAGCTGCACTAAAGCTTGTCGGTGAGACATTCCCATGGAGCAGTAACAGCAGTTTTATGTACTCAATGGAGAATCATAACAGCGTCCTTGGGATTAGGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTCTCAGTAAAGGAGCTGCTGCTTTTGCAGTTGACATTGAAGATACACATGTTGGTGAATCAGAAAGCCCACAGTCTAACTTAAAACTAACACAGCACCACATTCAGAGAAGAAATGAAGGTGGCGTTCTGAAAGAAGGGATGACAG.................................................................................................................................................................................................................................................................................................GTAACACATACAACTTGTTTGCATTCCCATCAGAATGCAATTTTTCAGGTCGAAAATTCGACCCTAACCTGATTAAGATTATCAAAGAAGGGTCTGAAAGAATCTTAGAAAGCTCCCAGTATTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTGCTGGTTAGTTCTGATAGATGCTGCTAAAGGATGTGCTACCAATCCACCAAATTTATCAATGTTTAAAGCAGACTTTGTTGTGTTCTCATTCTACAAG...........................................................................................................................TTATTTGGCTATCCAACTGGCCTTGGAGCACTCATTGTTCGAAAGG....................................................................................................................................................................................................................................................................................ATGCTGCTAAGCTGATGAAGAAGACCTACTTTAGTGGAG...............................................................................GCACGGTGACTGCAGCTATTGCTGACGTTGACTTTTTCAAAAGAAGAGAAGGTGTAGAGGAATTTTTTGAGGATGGAACCATTTCATTCTTGAGCATAACAGCAATTCAACATGGGTTCAAAATAATTAATATGCTAACGACATCTTCGATTTTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACAACATCAATTGCAGCATATGTGAGGAATAAGCTTTTGGCACTGAAGCATGAAAATGGAGAATTTGTTTGCACGCTGTACGGG..................................................................................................................................................................................................................................................................................................................................................TTATTATCTAGTGAGATGGGCCCCACAGTTTCATTCAACATGAAAAGACCAGATGGAACATGGTATGGATACCGTGAGGTGGAAAAATTGGCAACCTTGGCAGGAATTCAACTGCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATGTTTTTGCAATCCTGGTGCTTGTGCTAAATATCTTGGTTTGTCACACTTGGATCTTCTTTCAAATATTGAG.........................................................................................GCTGGGCATGTGTGCTGGGATGATCGTGACATTTTACATGGAAAACCAACTGGAGCAGTCAGAGTATCTTTTGGTTACATGTCAACATTCGAAGATGCCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGTCAACTTCGTGGAAAGTAATTTTGTGATATCATCTTTTAATCGGTGTGCATTGCAGCCAAGGTCCATCTCTCTGCCAATTGAAG..........................................................................................................................................................................GGATTGCAGAAGCTGCTGCACGGCATTTCCTCACATCTATTACTGTCTATCCAATAAAGTCTTGTGCGGGATTTAGTGTGGATCAGTGGCCTCTAACATCTACTG.......................................................................................................................................................................................................GGTTATTGCATGATCGTGAATGGATTCTCAAGAGCACAACCGGTGAAATTCTTACCCAAAAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAAATGTGCTATATCTCCACGCTGATTGATCTCAATTTGGGGAAACTGTTTGTAGAGTCACCTCGTTGCAAGGAGAAATTGCAGATTGAACTCAAATCCAGCTCACTGGTCACTGAAAGAGATGAAATGGATATCCAAAATCATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAAGTCACAAGTTACAACAATGAGGTTGATATCTGGTTCAGCAGGGCGATTGATCGACCTTGCACTCTACTAAGAAATTCCGATTCCCAGAGTCACTCCTGCATAAATAAGAACGGGAGTCCTGGCATGTGCAGGGATGTTGGTGCTAGATTGAATTTTGTTAATGAAGCCCAATTTCTGCTGATATCTGAAGAAAGCATAAAGGACCTCAACTCTAGGCTGAAATCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACGAAGGAGAAATGGTGGACAAGCAGTACAAGTTGGTGTAATGAGATTTCGACCCAATCTTGTAGCATCTAGTGGTGAACCATATGCAGAAGATGGATGGAGCAATATAAATATTGGAGGCAAATATTTTATG...............................................................................................................................................................TCATTGGGTGGTTGCAATCGTTGCCAGATGATCAATATAAATCCAGAGGCTGGGGAGGTGCAGAGGTTTACTGAACCTTTGGCAACTTTAGCAGGTTACAGGAGAGCAAAG.............................................................................................GGGAAAATAATGTTTGGCATACTGCTAAGATATGAGAATAATACGAAAACCGAGTCAGATACATGGATTCGTGTGGGAGAAGAAATAATTCCAAATGGAGATAGGCATTGATTGTTTTTCGTGGAAGTTCCTATTTGAGACTTGTAAGTAGTCACAACAGAGGTGATACAAGTGTTCAATATTGTGAAGCAGCGCAAAAAACACTTGCTCTAGCCAGGTCAATACATCAAACTGTACTTTGTTGCTGTTCTCTATCTGCAAAAGAGTATGTTCTTCTAAAAGAACTCGCTAAGATCTTCATTCTTTGTAACCAGTACTATTATAAGCTAATAAATACCCAATCGTAATATTAACTTCTTTGGGGCTGCGTATAGTTTTATGTGTAAGTTTTTAGTTTGTGTAGTGACTCGGTGTGCAAGTACAACCCATGGATGATGCAAAAATCCTCAGGACATCGCCATGATCTTATTAACAGTGCTTTCTCGAGAGTTGAGACCAAACGGGTGGAAAAGATAGTGAACGTTGAAAGCTTTATTCCTCTCAACTATGAAGGTTAATTATGAATGTACATGTTAATACTTAGCAATATTGGTGGAATAATATGTTTGTCATTTTGTTTTCACTCTTCGCAAAGGAACAAAGAATCCATTGCTCAAATTTCAGAAGTAAAAGGATATACTACTATCAATTATGTCTTGACTAAAAA............................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469894" ref_strand="+" ref_description="SGN-E469894 [cSTB-15-D7]">
      <seq>tgacattttacatggaaaaccaactggagcagtcagagtatcttttggttacatgtcaacatttgaagatgccatgaaactcgtcaacttcgtggaaaataattttgtaataacatcatctaatcggtgtgcattgcagccaagttccatctctttgccaattgaagggattgcaaaagctgctgcacgacattttctctcatctattactgtctatccaataaagtcttgtgcgggatttagtgtggatcagtggcctctaacatctactgggttattgcatgatcgtgaatggattctcaagagcacaaccggtgaaattcttacccaaaagaaggttccagaaatgtgctatatttccacgctgattgatctcaatttgggaaaactgtttgtagagtcacctcgttgcaaggagaaactgcagatcgagctcaaatccaactcacttgtcgctggaagagatgaaatggatatccaaaatcatagatatgaagtcagaagttacaacaatgaggttgatatctggttcagcagggcaattgatcgaccttgcactctattaaggaattccagttctcagagtcactcctgcataaataagaatgggagtcctggcatgtgcaaggatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="14027" stop="18921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14327" g_stop="14402" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14403" i_stop="15151" i_length="749">
            <donor d_prob="0.654" d_score="0.98"/>
            <acceptor a_prob="0.744" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15152" g_stop="15242" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="167" r_length="91" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15243" i_stop="15412" i_length="170">
            <donor d_prob="0.966" d_score="0.92"/>
            <acceptor a_prob="0.934" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15413" g_stop="15517" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="272" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15518" i_stop="15716" i_length="199">
            <donor d_prob="0.480" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15717" g_stop="15781" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="337" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15782" i_stop="16688" i_length="907">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16689" g_stop="16840" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="489" r_length="152" r_score="0.941"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16841" i_stop="18476" i_length="1636">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18477" g_stop="18621" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="634" r_length="145" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E469894" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14327" e_stop="14402"/>
          <exon e_start="15152" e_stop="15242"/>
          <exon e_start="15413" e_stop="15517"/>
          <exon e_start="15717" e_stop="15781"/>
          <exon e_start="16689" e_stop="16840"/>
          <exon e_start="18477" e_stop="18621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATTTTACATGGAAAACCAACTGGAGCAGTCAGAGTATCTTTTGGTTACATGTCAACATTCGAAGATGCCATGGTAAGGGAACCCACCATTCCCAACCTAATTCCCAAAAAATGAAGTGTAGTTCTATATTTTTTATAGTACAACATGCTTCTTTCTTCAAGATTTTGATGTGCCAAATATTGAACGGTTGGAGTTAAAAATTTACATTTCAACTTAAACGTGGGGCAATCTCTTTATACCTAATTTGTCTTGGGCAATCCTCACTTCGTAAGCTAATTAAAGGTTGTGTTAAGCCTAACATGCACTTTCATAATAGAGAGAGAAAGGAAAATATGTAGCTTAATGGTCACATAGAACAATAATTGCCAACTTCCAATTTTTCACTTTCACTTGGCCATTAGACAGGCAAGCTGAAAGAGAGAAGGAATAAAGAACTAAAACAAAGATGATCTCTTTAGTTCTTCAAGTTTCTATCTGAAGAAAGAGCAACCTTCTAGTCATTTGGATATAAAAAGCTACAAGCTACTTTTCTTTTGACATGGTAAAGAATATATCTAAAACAGCAATATGATTTCTGAAAAAGCTAAATTGTTGAAAAACGGAATATGGTTTGCTACTCCTATTACTTTTTGGTTCTTTTCTATTTCTATATTTCCCTTTTCTGTTGTTTGTTTAGGATGTTGCTGGGCAGAAGCTTCAATTTCTATGAAGTTATCTTGTAATTGCCTGAATGATTGATTAGCAAACTAATCTTTGCTCTGGATGTTCCTCTGAGAGCTAGTCTTATTTACTACTTCATTCCGTTCTACTTGTCTATGCAGAAATTCGTCAACTTCGTGGAAAGTAATTTTGTGATATCATCTTTTAATCGGTGTGCATTGCAGCCAAGGTCCATCTCTCTGCCAATTGAAGGTCAACTTTTGTATCTTTCTACTATTAGGCATGCATTAAATCGATATGTTGAATTGGCTTCTTGTAGACCAGAAGTTGATTGCAAGTGTGGAAGTTTGTCATTTTAGTACCATAAAAGAAATTGTGCAAACTTGTTTAGTCAACCCATGCATTTCATTGACCAATTGCAGGGATTGCAGAAGCTGCTGCACGGCATTTCCTCACATCTATTACTGTCTATCCAATAAAGTCTTGTGCGGGATTTAGTGTGGATCAGTGGCCTCTAACATCTACTGGTAGCTATTCTGCTACATCTCATAGGAAAATTCAGTAGTTCAATTTTTATGGCACATATGATTTTGTCAAAATCAAGAGATATTTGCTCATTTCCATTGCATATAAGAAATTGATCCATGTTTTCTTTAGAATATCAAAGTATTTTGACTTTCAATGTATCATTCTTACATGTTGTCATTCCGTTCAATATGAATTTAGGGTTATTGCATGATCGTGAATGGATTCTCAAGAGCACAACCGGTGAAATTCTTACCCAAAAGAAGGTAGAATACTTTATAATTCACATCATGTGTGTTGATGCCTGTTATCCATGTGCAATGCGATGGTAAAACTACCTTCATTCACCCATTATAATTTAATTTAGTAAAGTGGAAAACATAGCATTGTTGTCTATCATTTGATCTACCCATCCTTCAATGTGTTTTGCTTTTAACCTTTTTAATCTCCTAGACAAGCCTTACTAATAATTGACTATTTTCTCAAAGTAGCATGCAACTTCTTAATGTGGGTTGTGTGCATTGTCAGGCTACATGAGGTCTTTTTTTCGACCTTCCCAATGAAATTATTTATTTTCTCTCTTTTCTTCTAATTCTTTTTTCTATTTGTTTGAGATCGAGGGGTAGTTGGTGTTTTCTAATTTGATTTAATGTATTTTAGCTTCTTTTTTGAAGCCTTACAATGCTCATTATATAATAGAATTGATTAGATGCCATCCTTTTTGTACAAGATATTCAACAATTCATGGTCTTAAAAAGAAGTTGAATAGCCTATAATCTGTACTACCAATAACATTTCAAGTCCTTTGAATAACTCTCCATTATCTCAATATATAAATCCTATTTTCTCCTGTGTTCCACTACTAACTTTGAAGTGTCTTAATCTCTACACTCCATGTTTTAACCTGTCATCTAATTTACTTATTTTTTGTTTTTCTCGAAAACATTCTTGAAAATATGCAAAGTGTCATGCTCTCGATTGGGATATAATCTCTACTTTTATATCTAGACATGTATTTTTGTATGAGAAGCAAGTTACTACGGAAGCTTATATCTTTGAAAGATAATTAATGATTATTCAAAATTTACTAGCTATTGCCTCTTAATTATTGTTTCCGATCCAGTGTTGATTACTTCTGCATCAATATCTAAGTCAGGTGTATTTGCGTTCTAGGTTCCAGAAATGTGCTATATCTCCACGCTGATTGATCTCAATTTGGGGAAACTGTTTGTAGAGTCACCTCGTTGCAAGGAGAAATTGCAGATTGAACTCAAATCCAGCTCACTGGTCACTGAAAGAGATGAAATGGATATCCAAAATCATAGGTTTGAACTTCATCTTCACTTCTTTCCTTTTGATATTAAATACTTAAAAGTAGCTACCTCTTAAAAAAATAAAAATAAAAAATCACGTGAATCAATATGTAGAGCTTTACAACTCAACAAAGAGATCCACATAGCCGTCAAAAAAAATTCAAACGGCTTTATGTACATACATTTACAGACATAGTATAGAATCTTATAGTACCTACATATTCTTAACTTGGGTGAGCATCTATGTTTTTTCAGACTATTTTATTTGGTCGTATGTGTAAGAGCCCAACTTTTCTTCTATTCTCGAGTTCAATAATTTTTCCTGTACCTATGTTACTCGGAATCTTTCAAAATGTCAAAGGGTGTGTGTCGGATTCTCCAAAGTATTGTATTTTTGGAGAATCCGACACGGGTGCAGCATCAAAAGTGAAGAGCTCGCTCAACTTAGTCCTGTAGCACTAAAACTTTGTATTTTGAAGAAACTTTTTTTTTGAGAAGGATTTGTATTTTGAAGCTTAAGTTGTTAAAACTTTGTGATCGTGTATCTGAACTGACTTAAACAATGTTGTGTTGCAGTTTCATATATGGCTACCATTAAGTGAAGGGTTCTTTCTTCACTTTTACAGTTGTACTTATTTTTTAATCAGAAAGGTGAAGTTTCATTAAGATAACACGGTTTACGTACAGTAGAAAAAGTTAGAAAGGAAAAATAGTGCTCCTTAAGTTTGGTCTAATATTTATGAAGAATTTTGTTTGTGGGCTTGCATGTGAGTTTCTAAGTTCGAACCACTTAGATGTAGTGGTTGAAAAGATGATTAGGGTATGTGCGTTGTACTGATGTAAGTTCTGTTGTTGACCGTCTGGTATGGTTGCCTTTAGTGAAGCATGAGAAGTTATAATTCTTGACAATGTTTGCCCTAATATTTTTGAACGGTGGTGTCCAGGCCAACTTGTGCGACCTGGACTGTTCCATTAGGTACCAACTGCCTCCCACCCAGCAACACTACTATCGGGTAACTTTGTCTACCAAGGCTTAGGCAGATAGGAAGAAATCACCTAGTGTTTCGTCTCTTCTGTGGTTTGAACCTTATCTCTAAGGTTGCACGCACTTCATTGACCACTAGGCCACACATTTCGACCTTCACTGTGTTTGCTTTTCAAAGATTGTACTCATTGTTTTCCTTGTATGTTGGAGACTATAATTATGTTCTTTGTCATGTAATAGAGTGTTTGATTAGGATAAAGTGGGTGTATTTCTCATCTGAACAAAGAAATAGTTTATGGAACTAACTGTTTTTAAAGCTTTGGCTCATTGTCGAGCTTCAAACTTCAATTTATTCGTTCCAAAGCAGATTTTAAACAGTTGTGGTTTAATCAGTTGCTTTATTATACTTCCCAAAAGACAAAACCAAGACAAGAAGAAACTAAAAAAGGAGTGAACAGTATTTTGAGAAGGATGTCATTATTTTAGTCTGCATGTTCTTAAAATAGCTACCGTTATCTGTGACTACTGTGGTAGTTCATGTGGAAATGAAAAAGAATCTAAAAAGAAGTGTAGTTCATGAATACAGTCTATGTAAGTGGTGTTTTTGAATAGCAGTATTATAGTAATGCTCAATCATTTTTCATGTCTTTTTGATTTGGGTAGATATGAAGTCACAAGTTACAACAATGAGGTTGATATCTGGTTCAGCAGGGCGATTGATCGACCTTGCACTCTACTAAGAAATTCCGATTCCCAGAGTCACTCCTGCATAAATAAGAACGGGAGTCCTGGCATGTGCAGGGATGTT</genome_strand>
        <mrna_strand>TGACATTTTACATGGAAAACCAACTGGAGCAGTCAGAGTATCTTTTGGTTACATGTCAACATTTGAAGATGCCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCGTCAACTTCGTGGAAAATAATTTTGTAATAACATCATCTAATCGGTGTGCATTGCAGCCAAGTTCCATCTCTTTGCCAATTGAAG..........................................................................................................................................................................GGATTGCAAAAGCTGCTGCACGACATTTTCTCTCATCTATTACTGTCTATCCAATAAAGTCTTGTGCGGGATTTAGTGTGGATCAGTGGCCTCTAACATCTACTG.......................................................................................................................................................................................................GGTTATTGCATGATCGTGAATGGATTCTCAAGAGCACAACCGGTGAAATTCTTACCCAAAAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAAATGTGCTATATTTCCACGCTGATTGATCTCAATTTGGGAAAACTGTTTGTAGAGTCACCTCGTTGCAAGGAGAAACTGCAGATCGAGCTCAAATCCAACTCACTTGTCGCTGGAAGAGATGAAATGGATATCCAAAATCATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAAGTCAGAAGTTACAACAATGAGGTTGATATCTGGTTCAGCAGGGCAATTGATCGACCTTGCACTCTATTAAGGAATTCCAGTTCTCAGAGTCACTCCTGCATAAATAAGAATGGGAGTCCTGGCATGTGCAAGGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314264" ref_strand="+" ref_description="SGN-E314264 [cTOA-21-H20]">
      <seq>gattgcagaagctgctgcacggcatttcctcacatctattactgtctatccaataaagtcttgtgcgggatttagtgtggatcagtggcctctaacatctactgggttattgcatgatcgtgaatggattctcaagagcacaaccggtgaaattcttacccaaaagaaggttccagaaatgtgctatatctccacgctgattgatctcaatttgggggaactgtttgtagagtcacctcgttgcaaggagaaattgcagattgaactcaaatccagctcactggtcactgaaagagatgaaatggatatccaaaatcatagatatgaagtcacaagttacaacaatgaggttgatatctggttcagcagggcgattgatcgaccttgcactctactaagaaattccgattcccagagtcactcctgcataaataagaacgggagtcctggcatgtgcagggatgttggtgctagattgaattttgttaatgaagcccaatttctgctgatatctgaagaaagcataaaggacctcaactctaggctgaaatctaatggacgaaggagaaatggtggacaagcagtacaagttggtgtaatgagatttcgacccaatcttgtagcatctagtggtgaacatatgcagaagatggatggagnncatataatattggaggccaatattttatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="15114" stop="19642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15414" g_stop="15517" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15518" i_stop="15716" i_length="199">
            <donor d_prob="0.480" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15717" g_stop="15781" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="169" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15782" i_stop="16688" i_length="907">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16689" g_stop="16840" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="321" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16841" i_stop="18476" i_length="1636">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18477" g_stop="18709" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="554" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18710" i_stop="19236" i_length="527">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19237" g_stop="19373" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="690" r_length="136" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E314264" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15414" e_stop="15517"/>
          <exon e_start="15717" e_stop="15781"/>
          <exon e_start="16689" e_stop="16840"/>
          <exon e_start="18477" e_stop="18709"/>
          <exon e_start="19237" e_stop="19373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGCAGAAGCTGCTGCACGGCATTTCCTCACATCTATTACTGTCTATCCAATAAAGTCTTGTGCGGGATTTAGTGTGGATCAGTGGCCTCTAACATCTACTGGTAGCTATTCTGCTACATCTCATAGGAAAATTCAGTAGTTCAATTTTTATGGCACATATGATTTTGTCAAAATCAAGAGATATTTGCTCATTTCCATTGCATATAAGAAATTGATCCATGTTTTCTTTAGAATATCAAAGTATTTTGACTTTCAATGTATCATTCTTACATGTTGTCATTCCGTTCAATATGAATTTAGGGTTATTGCATGATCGTGAATGGATTCTCAAGAGCACAACCGGTGAAATTCTTACCCAAAAGAAGGTAGAATACTTTATAATTCACATCATGTGTGTTGATGCCTGTTATCCATGTGCAATGCGATGGTAAAACTACCTTCATTCACCCATTATAATTTAATTTAGTAAAGTGGAAAACATAGCATTGTTGTCTATCATTTGATCTACCCATCCTTCAATGTGTTTTGCTTTTAACCTTTTTAATCTCCTAGACAAGCCTTACTAATAATTGACTATTTTCTCAAAGTAGCATGCAACTTCTTAATGTGGGTTGTGTGCATTGTCAGGCTACATGAGGTCTTTTTTTCGACCTTCCCAATGAAATTATTTATTTTCTCTCTTTTCTTCTAATTCTTTTTTCTATTTGTTTGAGATCGAGGGGTAGTTGGTGTTTTCTAATTTGATTTAATGTATTTTAGCTTCTTTTTTGAAGCCTTACAATGCTCATTATATAATAGAATTGATTAGATGCCATCCTTTTTGTACAAGATATTCAACAATTCATGGTCTTAAAAAGAAGTTGAATAGCCTATAATCTGTACTACCAATAACATTTCAAGTCCTTTGAATAACTCTCCATTATCTCAATATATAAATCCTATTTTCTCCTGTGTTCCACTACTAACTTTGAAGTGTCTTAATCTCTACACTCCATGTTTTAACCTGTCATCTAATTTACTTATTTTTTGTTTTTCTCGAAAACATTCTTGAAAATATGCAAAGTGTCATGCTCTCGATTGGGATATAATCTCTACTTTTATATCTAGACATGTATTTTTGTATGAGAAGCAAGTTACTACGGAAGCTTATATCTTTGAAAGATAATTAATGATTATTCAAAATTTACTAGCTATTGCCTCTTAATTATTGTTTCCGATCCAGTGTTGATTACTTCTGCATCAATATCTAAGTCAGGTGTATTTGCGTTCTAGGTTCCAGAAATGTGCTATATCTCCACGCTGATTGATCTCAATTTGGGGAAACTGTTTGTAGAGTCACCTCGTTGCAAGGAGAAATTGCAGATTGAACTCAAATCCAGCTCACTGGTCACTGAAAGAGATGAAATGGATATCCAAAATCATAGGTTTGAACTTCATCTTCACTTCTTTCCTTTTGATATTAAATACTTAAAAGTAGCTACCTCTTAAAAAAATAAAAATAAAAAATCACGTGAATCAATATGTAGAGCTTTACAACTCAACAAAGAGATCCACATAGCCGTCAAAAAAAATTCAAACGGCTTTATGTACATACATTTACAGACATAGTATAGAATCTTATAGTACCTACATATTCTTAACTTGGGTGAGCATCTATGTTTTTTCAGACTATTTTATTTGGTCGTATGTGTAAGAGCCCAACTTTTCTTCTATTCTCGAGTTCAATAATTTTTCCTGTACCTATGTTACTCGGAATCTTTCAAAATGTCAAAGGGTGTGTGTCGGATTCTCCAAAGTATTGTATTTTTGGAGAATCCGACACGGGTGCAGCATCAAAAGTGAAGAGCTCGCTCAACTTAGTCCTGTAGCACTAAAACTTTGTATTTTGAAGAAACTTTTTTTTTGAGAAGGATTTGTATTTTGAAGCTTAAGTTGTTAAAACTTTGTGATCGTGTATCTGAACTGACTTAAACAATGTTGTGTTGCAGTTTCATATATGGCTACCATTAAGTGAAGGGTTCTTTCTTCACTTTTACAGTTGTACTTATTTTTTAATCAGAAAGGTGAAGTTTCATTAAGATAACACGGTTTACGTACAGTAGAAAAAGTTAGAAAGGAAAAATAGTGCTCCTTAAGTTTGGTCTAATATTTATGAAGAATTTTGTTTGTGGGCTTGCATGTGAGTTTCTAAGTTCGAACCACTTAGATGTAGTGGTTGAAAAGATGATTAGGGTATGTGCGTTGTACTGATGTAAGTTCTGTTGTTGACCGTCTGGTATGGTTGCCTTTAGTGAAGCATGAGAAGTTATAATTCTTGACAATGTTTGCCCTAATATTTTTGAACGGTGGTGTCCAGGCCAACTTGTGCGACCTGGACTGTTCCATTAGGTACCAACTGCCTCCCACCCAGCAACACTACTATCGGGTAACTTTGTCTACCAAGGCTTAGGCAGATAGGAAGAAATCACCTAGTGTTTCGTCTCTTCTGTGGTTTGAACCTTATCTCTAAGGTTGCACGCACTTCATTGACCACTAGGCCACACATTTCGACCTTCACTGTGTTTGCTTTTCAAAGATTGTACTCATTGTTTTCCTTGTATGTTGGAGACTATAATTATGTTCTTTGTCATGTAATAGAGTGTTTGATTAGGATAAAGTGGGTGTATTTCTCATCTGAACAAAGAAATAGTTTATGGAACTAACTGTTTTTAAAGCTTTGGCTCATTGTCGAGCTTCAAACTTCAATTTATTCGTTCCAAAGCAGATTTTAAACAGTTGTGGTTTAATCAGTTGCTTTATTATACTTCCCAAAAGACAAAACCAAGACAAGAAGAAACTAAAAAAGGAGTGAACAGTATTTTGAGAAGGATGTCATTATTTTAGTCTGCATGTTCTTAAAATAGCTACCGTTATCTGTGACTACTGTGGTAGTTCATGTGGAAATGAAAAAGAATCTAAAAAGAAGTGTAGTTCATGAATACAGTCTATGTAAGTGGTGTTTTTGAATAGCAGTATTATAGTAATGCTCAATCATTTTTCATGTCTTTTTGATTTGGGTAGATATGAAGTCACAAGTTACAACAATGAGGTTGATATCTGGTTCAGCAGGGCGATTGATCGACCTTGCACTCTACTAAGAAATTCCGATTCCCAGAGTCACTCCTGCATAAATAAGAACGGGAGTCCTGGCATGTGCAGGGATGTTGGTGCTAGATTGAATTTTGTTAATGAAGCCCAATTTCTGCTGATATCTGAAGAAAGCATAAAGGACCTCAACTCTAGGCTGAAATCTAGTATGTTTTCTTTTCTTTTCTCTTTGTTAGTAGTGAGCAAACTCTCTTTCTGGTATTGAGCTCTTCTGAAATAGGAATATAAGGAAACTAGAGAATGCACCCAATACAATTGGCCAATTTGAGGCTATTCCTCTGAGCTGAATGCATAACAACTTTTAAACCATGTCTATACAATATTAGTGCAATAACTTCTGTTCAGAGGATACAAATGCTTTGCATTACTTGAATCTATGTTAGACGTGGTGGTATTTCTGTTTTTAGAGGAGACTTGAGTTCAGAAGTCTTACCTGTAGTAGCATGGCTGTTGCGGCTGTAGGAGGATCTAAAAGGAATTAAAAGTAAATGTATTTGCTGTCTGTTCAGTCTTGTATAGTCCACTATACTTGAATTATTTTCCTGCATAAGTCACTTGTATCACTTAATATGCTTCCTCTGATGGTGGTTAGTGATTTTTACAGAAAGGTTTATGTATAAAGCAAATAGGTTCATCAAAAATTCATTCGACCTTTTTTCTTTAATCTTTTTAGATGGACGAAGGAGAAATGGTGGACAAGCAGTACAAGTTGGTGTAATGAGATTTCGACCCAATCTTGTAGCATCTAGTGGTGAACCATATGCAGAAGATGGATGGAGCA-ATATAAATATTGGAGGCAAATATTTTATG</genome_strand>
        <mrna_strand>GATTGCAGAAGCTGCTGCACGGCATTTCCTCACATCTATTACTGTCTATCCAATAAAGTCTTGTGCGGGATTTAGTGTGGATCAGTGGCCTCTAACATCTACTG.......................................................................................................................................................................................................GGTTATTGCATGATCGTGAATGGATTCTCAAGAGCACAACCGGTGAAATTCTTACCCAAAAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAAATGTGCTATATCTCCACGCTGATTGATCTCAATTTGGGGGAACTGTTTGTAGAGTCACCTCGTTGCAAGGAGAAATTGCAGATTGAACTCAAATCCAGCTCACTGGTCACTGAAAGAGATGAAATGGATATCCAAAATCATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAAGTCACAAGTTACAACAATGAGGTTGATATCTGGTTCAGCAGGGCGATTGATCGACCTTGCACTCTACTAAGAAATTCCGATTCCCAGAGTCACTCCTGCATAAATAAGAACGGGAGTCCTGGCATGTGCAGGGATGTTGGTGCTAGATTGAATTTTGTTAATGAAGCCCAATTTCTGCTGATATCTGAAGAAAGCATAAAGGACCTCAACTCTAGGCTGAAATCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACGAAGGAGAAATGGTGGACAAGCAGTACAAGTTGGTGTAATGAGATTTCGACCCAATCTTGTAGCATCTAGTGGTGAA-CATATGCAGAAGATGGATGGAGNNCATAT-AATATTGGAGGCCAATATTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354772" ref_strand="+" ref_description="SGN-E354772 [cTOS-19-I23]">
      <seq>ctttggcaactttagcaggttacaggagagcaaaggggaaaataatgtttggcatactgctaagatatgagaataatacgaaaaccgagtcagatacatggattcgtgtgggagaagaaataattccaaatggagataggcattgattgtttttcgtggaagttcctatttgagacttgtaagtagtcacaacagaggtgatacaagtgttcaatattgtgaagcagcgcaaaaaacacttgctctagccaggtcaatacatcaaactgtactttgttgctgttctctatctgcaaaagagtatgttcttctaaaagaactcgctaagatcttcattctttgtaaccagtactattataagctaataaatacccaatcgtaatattaacttctttggggctgcgtatagttttatgtgtaagtttttagtttgtgtagtgactcggtgtgcaagtacaacccatggatgatgcaaaaatcctcaggacatcgccatgatcttattaacagtgctttctcgagagttgagaccaaacgggtggaaaagatagtgaacgttgaaagctttattcctctcaactatgaaggttaattatgaatgtacatgttaatacttagcaatattggtggaataatatgtttgtcattttgttttcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="19309" stop="20658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19609" g_stop="19643" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19644" i_stop="19736" i_length="93">
            <donor d_prob="0.201" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19737" g_stop="20363" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="662" r_length="627" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E354772" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19609" e_stop="19643"/>
          <exon e_start="19737" e_stop="20363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGCAACTTTAGCAGGTTACAGGAGAGCAAAGGTTAGAACCCACCTAAAAATGAAGAAACCCCCCCAAAAAATGCAGTTTGCTTGCTTAGTTAATTGCTTCTTACCATATCTCCCTTGCAAACAGGGGAAAATAATGTTTGGCATACTGCTAAGATATGAGAATAATACGAAAACCGAGTCAGATACATGGATTCGTGTGGGAGAAGAAATAATTCCAAATGGAGATAGGCATTGATTGTTTTTCGTGGAAGTTCCTATTTGAGACTTGTAAGTAGTCACAACAGAGGTGATACAAGTGTTCAATATTGTGAAGCAGCGCAAAAAACACTTGCTCTAGCCAGGTCAATACATCAAACTGTACTTTGTTGCTGTTCTCTATCTGCAAAAGAGTATGTTCTTCTAAAAGAACTCGCTAAGATCTTCATTCTTTGTAACCAGTACTATTATAAGCTAATAAATACCCAATCGTAATATTAACTTCTTTGGGGCTGCGTATAGTTTTATGTGTAAGTTTTTAGTTTGTGTAGTGACTCGGTGTGCAAGTACAACCCATGGATGATGCAAAAATCCTCAGGACATCGCCATGATCTTATTAACAGTGCTTTCTCGAGAGTTGAGACCAAACGGGTGGAAAAGATAGTGAACGTTGAAAGCTTTATTCCTCTCAACTATGAAGGTTAATTATGAATGTACATGTTAATACTTAGCAATATTGGTGGAATAATATGTTTGTCATTTTGTTTTCACTCTT</genome_strand>
        <mrna_strand>CTTTGGCAACTTTAGCAGGTTACAGGAGAGCAAAG.............................................................................................GGGAAAATAATGTTTGGCATACTGCTAAGATATGAGAATAATACGAAAACCGAGTCAGATACATGGATTCGTGTGGGAGAAGAAATAATTCCAAATGGAGATAGGCATTGATTGTTTTTCGTGGAAGTTCCTATTTGAGACTTGTAAGTAGTCACAACAGAGGTGATACAAGTGTTCAATATTGTGAAGCAGCGCAAAAAACACTTGCTCTAGCCAGGTCAATACATCAAACTGTACTTTGTTGCTGTTCTCTATCTGCAAAAGAGTATGTTCTTCTAAAAGAACTCGCTAAGATCTTCATTCTTTGTAACCAGTACTATTATAAGCTAATAAATACCCAATCGTAATATTAACTTCTTTGGGGCTGCGTATAGTTTTATGTGTAAGTTTTTAGTTTGTGTAGTGACTCGGTGTGCAAGTACAACCCATGGATGATGCAAAAATCCTCAGGACATCGCCATGATCTTATTAACAGTGCTTTCTCGAGAGTTGAGACCAAACGGGTGGAAAAGATAGTGAACGTTGAAAGCTTTATTCCTCTCAACTATGAAGGTTAATTATGAATGTACATGTTAATACTTAGCAATATTGGTGGAATAATATGTTTGTCATTTTGTTTTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483497" ref_strand="+" ref_description="SGN-E483497 [cSTE-9-L21]">
      <seq>ggataagtagccaacaacaaagaacaaacaccttcgttttctctcaaatcaattccttcgaaaatggagaaatttgtcactctaaatgcgtcaaatttgagctccggttcccctttaccaattgggttttcttcgccttgccggaaatttgcagtttcagttcaacgccggcgggtccacgttaccagggcttccgttgctgtagaacagcaagctcaaactaaggtcgccgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagcaaagctaatagcctcatatcctgatctggctgaagatggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagcaatcttaccctgcaacctttcacgtgaagatgtganggatgcattcatttctttaactgcangttccctggctgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22528" stop="24710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22817" g_stop="23069" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.747" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24410" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="586" r_length="329" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E483497" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22817" e_stop="23069"/>
          <exon e_start="24081" e_stop="24410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATAAGTAGCCAACAAC--A-AACA-ACACCTTCATTTTCTCTCTAATCAATTCCTTCGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACT</genome_strand>
        <mrna_strand>GGATAAGTAGCCAACAACAAAGAACAAACACCTTCGTTTTCTCTCAAATCAATTCCTTCGAAAATGGAGAAATTTGTCACTCTAAATGCGTCAAATTTGAGCTCCGGTTCCCCTTTACCAATTGGGTTTTCTTCGCCTTGCCGGAAATTTGCAGTTTCAGTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTGTAGAACAGCAAGCTCAAACTAAGGTCGCCGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGCAAAGCTAATAGCCTCATATCCTGATCTGGCTGAAGATGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAG-CAATCTTACCCTGCAACCTTTCACGTGAAGATGTGANGGATGCATTCATTTCTTTAACTGCANGTTCCCTGGCTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455974" ref_strand="+" ref_description="SGN-E455974 [cSTS-28-M1]">
      <seq>acaacaaagaacaaacaccttcgttttctctcaaatcaattccttcgaaaatggagaaatttgtcactctaaatgcgtcaaatttgagctccggttcccctttaccaattgggttttcttcgccttgccggaaatttgcagtttcagttcaacgccggcgggtccacgttaccagggcttccgttgctgtagaacagcaagctcaaactaaggtcgccgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagcaaagctaatagcctcatatcctgatctggctgaagatggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagacaatcttaccctgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcangttccctggctgaacttccatcangaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgangggagtagttcaagctacattattggcactggcanggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22528" stop="25529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22827" g_stop="23069" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.747" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24486" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="650" r_length="406" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25098" g_stop="25229" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="783" r_length="133" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E455974" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22827" e_stop="23069"/>
          <exon e_start="24081" e_stop="24486"/>
          <exon e_start="25098" e_stop="25229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACAACAAAC-AACACCTTCATTTTCTCTCTAATCAATTCCTTCGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGA-GGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTT</genome_strand>
        <mrna_strand>ACAACAAAGAACAAACACCTTCGTTTTCTCTCAAATCAATTCCTTCGAAAATGGAGAAATTTGTCACTCTAAATGCGTCAAATTTGAGCTCCGGTTCCCCTTTACCAATTGGGTTTTCTTCGCCTTGCCGGAAATTTGCAGTTTCAGTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTGTAGAACAGCAAGCTCAAACTAAGGTCGCCGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGCAAAGCTAATAGCCTCATATCCTGATCTGGCTGAAGATGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACAATCTTACCCTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCANGTTCCCTGGCTGAACTTCCATCANGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGANGGGAGTAGTTCAAGCTACATTATTGGCACTGGCANGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562756" ref_strand="+" ref_description="SGN-E562756 [1196]">
      <seq>caaacgccttcggttttctctcaaatcaattccttcgaaaatggagaaatttgtcactctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccggaaatctgcagtttcagttcaacgccggcgggtccacgttaccaggggcttccgttgctgtagaacagcaagctcaaactaaggtcgccgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagcaaagctaatagcctcatatcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgcagagaagacaatcttaccctgcaacttccacgtgaagatgtgagggatgcattcatttctgtaactgcaggttcccttggctgaacttccatcaggaagcacaattggtactgcttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22549" stop="24742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22837" g_stop="23069" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.747" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24442" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="596" r_length="361" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E562756" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22837" e_stop="23069"/>
          <exon e_start="24081" e_stop="24442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACACCTTCA-TTTTCTCTCTAATCAATTCCTTCGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCA-GGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCC-TGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCAC</genome_strand>
        <mrna_strand>CAAACGCCTTCGGTTTTCTCTCAAATCAATTCCTTCGAAAATGGAGAAATTTGTCACTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGGAAATCTGCAGTTTCAGTTCAACGCCGGCGGGTCCACGTTACCAGGGGCTTCCGTTGCTGTAGAACAGCAAGCTCAAACTAAGGTCGCCGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGCAAAGCTAATAGCCTCATATCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTG-CAGAGAAGACAATCTTACCCTGCAA-CTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTGTAACTGCAGGTTCCCTTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345989" ref_strand="+" ref_description="SGN-E345989 [cTOF-24-I1]">
      <seq>ttccttcggaaatggagatattcgtcgctctaaatgcttcaaatttgagctccgtttcccttttacaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaaggacagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaaactgatgaggggagtagtcaagctacattattggcactggcagggcttaagcgtctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22565" stop="25500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22865" g_stop="23069" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24075" i_length="1006">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24076" g_stop="24486" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="615" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25098" g_stop="25200" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="718" r_length="103" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E345989" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22865" e_stop="23069"/>
          <exon e_start="24076" e_stop="24486"/>
          <exon e_start="25098" e_stop="25200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAG-AAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGA</genome_strand>
        <mrna_strand>TTCCTTCGGAAATGGAGATATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGTTTCCCTTTTA-CAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAAACTGATGAGGGGAGTAG-TCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709226" ref_strand="+" ref_description="SGN-E709226 [FA51AC08]">
      <seq>ccggaaatggagaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22571" stop="25583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22870" g_stop="23069" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24486" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="606" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25098" g_stop="25283" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="792" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E709226" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22870" e_stop="23069"/>
          <exon e_start="24081" e_stop="24486"/>
          <exon e_start="25098" e_stop="25283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGC</genome_strand>
        <mrna_strand>CCGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285221" ref_strand="+" ref_description="SGN-E285221 [cLER-20-P7]">
      <seq>cggaaatggagaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22571" stop="24618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22871" g_stop="23069" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24318" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="437" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E285221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22871" e_stop="23069"/>
          <exon e_start="24081" e_stop="24318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATAT</genome_strand>
        <mrna_strand>CGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303858" ref_strand="+" ref_description="SGN-E303858 [cLEX-4-E7]">
      <seq>ggaaatggagaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatattctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22572" stop="24709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22872" g_stop="23069" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24409" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="528" r_length="330" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E303858" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22872" e_stop="23069"/>
          <exon e_start="24081" e_stop="24409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATA-TCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAAC</genome_strand>
        <mrna_strand>GGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATTCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729232" ref_strand="+" ref_description="SGN-E729232 [LA20BF06]">
      <seq>ggaatggagaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22573" stop="25484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22873" g_stop="23069" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24486" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="603" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25098" g_stop="25184" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="690" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E729232" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22873" e_stop="23069"/>
          <exon e_start="24081" e_stop="24486"/>
          <exon e_start="25098" e_stop="25184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCA</genome_strand>
        <mrna_strand>GGAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342782" ref_strand="+" ref_description="SGN-E342782 [cTOF-7-M20]">
      <seq>aatggagaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttacaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatganggnagtagttcaagctacattattggcactggcagggctttaagcgtctgaatatgacagaaaaatgtatcatcgatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22575" stop="25529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22875" g_stop="23069" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24486" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="600" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25098" g_stop="25229" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="735" r_length="135" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E342782" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22875" e_stop="23069"/>
          <exon e_start="24081" e_stop="24486"/>
          <exon e_start="25098" e_stop="25229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGA-GGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGC-TTAAGCGTCTGAATATGACAG-AAAATGTATCATCGATCCTT</genome_strand>
        <mrna_strand>AATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTA-CAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGANGGNAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTTAAGCGTCTGAATATGACAGAAAAATGTATCATCGATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702948" ref_strand="+" ref_description="SGN-E702948 [FA20AE12]">
      <seq>gagaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22579" stop="26049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22879" g_stop="23069" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24361" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="472" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24362" i_stop="25139" i_length="778">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25140" g_stop="25304" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="637" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25415" g_stop="25592" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="815" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25682" g_stop="25749" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="816" r_stop="883" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E702948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22879" e_stop="23069"/>
          <exon e_start="24081" e_stop="24361"/>
          <exon e_start="25140" e_stop="25304"/>
          <exon e_start="25415" e_stop="25592"/>
          <exon e_start="25682" e_stop="25749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGC</genome_strand>
        <mrna_strand>GAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692131" ref_strand="+" ref_description="SGN-E692131 [LH_Ea07O17]">
      <seq>tagaaattcgtcactctaaatgcttcaaatttgagctcccgtttccttttgccaattgggttttcttcgccttgccgtaaatctacacatttcacttcaacgccggagggtccacgattaccagggcttccgttgctgtaaaacaacaagctcaaactaaggtcgctgttatcaaagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaacagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagatgaagccctcatcaacggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgatggagaatttcataggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatataggatatgctaccagctgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22580" stop="25559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22879" g_stop="23069" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24486" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="599" r_length="406" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25098" g_stop="25259" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="761" r_length="162" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E692131" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22879" e_stop="23069"/>
          <exon e_start="24081" e_stop="24486"/>
          <exon e_start="25098" e_stop="25259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCAC-TTTCACTTCAACGCCGGCGGGTCCACG-TTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCT</genome_strand>
        <mrna_strand>TAGAAATTCGTCACTCTAAATGCTTCAAATTTGAGCTCCCGTTTCCTTTTGCCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTACACATTTCACTTCAACGCCGGAGGGTCCACGATTACCAGGGCTTCCGTTGCTGTAAAACAACAAGCTCAAACTAAGGTCGCTGTTATCAAAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAACAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGATGAAGCCCTCATCAACGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGGAGAATTTCATAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATATAGGATATGCTACCAGCTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348215" ref_strand="+" ref_description="SGN-E348215 [cTOF-27-I11]">
      <seq>agaaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttacaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacanggttgaagaaactgaatganggagtagttcaagctacattattggcactggcagggcttaagcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22580" stop="25497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22880" g_stop="23069" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24486" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="595" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25098" g_stop="25197" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="695" r_length="100" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E348215" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22880" e_stop="23069"/>
          <exon e_start="24081" e_stop="24486"/>
          <exon e_start="25098" e_stop="25197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTC</genome_strand>
        <mrna_strand>AGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTA-CAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACANGGTTGAAGAAACTGAATGANGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373355" ref_strand="+" ref_description="SGN-E373355 [TUS-31-J15]">
      <seq>aaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagacactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22582" stop="25505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22882" g_stop="23069" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24486" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="594" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25098" g_stop="25205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="702" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E373355" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22882" e_stop="23069"/>
          <exon e_start="24081" e_stop="24486"/>
          <exon e_start="25098" e_stop="25205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATG</genome_strand>
        <mrna_strand>AAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGACACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373526" ref_strand="+" ref_description="SGN-E373526 [TUS-31-J14]">
      <seq>aaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22582" stop="25473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22882" g_stop="23069" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24486" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="594" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25098" g_stop="25173" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="670" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E373526" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22882" e_stop="23069"/>
          <exon e_start="24081" e_stop="24486"/>
          <exon e_start="25098" e_stop="25173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTAT</genome_strand>
        <mrna_strand>AAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254100" ref_strand="+" ref_description="SGN-E254100 [cLEG-34-N5]">
      <seq>aaattcgtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22582" stop="24788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22882" g_stop="23069" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24486" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="594" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E254100" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22882" e_stop="23069"/>
          <exon e_start="24081" e_stop="24486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT</genome_strand>
        <mrna_strand>AAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292049" ref_strand="+" ref_description="SGN-E292049 [cLET-1-A3]">
      <seq>aaattcgtcgctctaaatgcttcaaatctgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcatatattgctggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatgtgacagagaagactatcttaccgtgcaaccttccacgtgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22582" stop="24662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22882" g_stop="23069" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24362" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="470" r_length="282" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E292049" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22882" e_stop="23069"/>
          <exon e_start="24081" e_stop="24362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGA</genome_strand>
        <mrna_strand>AAATTCGTCGCTCTAAATGCTTCAAATCTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCATATATTGCTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATGTGACAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705574" ref_strand="+" ref_description="SGN-E705574 [FA27CB09]">
      <seq>gtcgctctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccgtaaatctgcactttcacttcaacgccggcgggtccacgttaccagggcttccgttgctctagaacagcaagctcaaactaaggtcgctgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22588" stop="25741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22888" g_stop="23069" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24486" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="588" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25098" g_stop="25304" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="795" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25415" g_stop="25441" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="822" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E705574" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22888" e_stop="23069"/>
          <exon e_start="24081" e_stop="24486"/>
          <exon e_start="25098" e_stop="25304"/>
          <exon e_start="25415" e_stop="25441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCAT</genome_strand>
        <mrna_strand>GTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469826" ref_strand="+" ref_description="SGN-E469826 [cSTB-14-M2]">
      <seq>gtcactctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccggaaatctgtagtttcagttcaacgccggcgagtccacgttaccagggcttccattgctgtagaacagcaagctcaaactaaggtcgccgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagcaaagctaatagcctcatatcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatcttccagagaagacaatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22588" stop="24735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22888" g_stop="23069" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.747" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24435" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="537" r_length="355" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E469826" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22888" e_stop="23069"/>
          <exon e_start="24081" e_stop="24435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACT</genome_strand>
        <mrna_strand>GTCACTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGGAAATCTGTAGTTTCAGTTCAACGCCGGCGAGTCCACGTTACCAGGGCTTCCATTGCTGTAGAACAGCAAGCTCAAACTAAGGTCGCCGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGCAAAGCTAATAGCCTCATATCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTTCCAGAGAAGACAATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411924" ref_strand="+" ref_description="SGN-E411924 [STM-15-B7]">
      <seq>gtcactctaaatgcttcaaatttgagctccggttcccttttaccaattgggttttcttcgccttgccggaaatctgtagtttcagttcaacgccggcgagtccacgttaccagggcttccattgctgtagaacagcaagctcaaactaaggtcgccgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagcaaagctaatagcctcatatcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatcttccagagaagacaatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22588" stop="24709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22888" g_stop="23069" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.747" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24409" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="511" r_length="329" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E411924" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22888" e_stop="23069"/>
          <exon e_start="24081" e_stop="24409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAAC</genome_strand>
        <mrna_strand>GTCACTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGGAAATCTGTAGTTTCAGTTCAACGCCGGCGAGTCCACGTTACCAGGGCTTCCATTGCTGTAGAACAGCAAGCTCAAACTAAGGTCGCCGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGCAAAGCTAATAGCCTCATATCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTTCCAGAGAAGACAATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467893" ref_strand="+" ref_description="SGN-E467893 [cSTB-2-E1]">
      <seq>ttcaacgccggcgagtccacgttaccagggcttccattgctgtagaacagcaagctcaaactaaggtcgccgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagcaaagctaatagcctcatatcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagacaatcttaccctgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccaaattctccaccgctatccctcactcaatgtgttggagaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22673" stop="24788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22973" g_stop="23069" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.747" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24486" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="503" r_length="406" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E467893" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22973" e_stop="23069"/>
          <exon e_start="24081" e_stop="24486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT</genome_strand>
        <mrna_strand>TTCAACGCCGGCGAGTCCACGTTACCAGGGCTTCCATTGCTGTAGAACAGCAAGCTCAAACTAAGGTCGCCGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGCAAAGCTAATAGCCTCATATCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACAATCTTACCCTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAAATTCTCCACCGCTATCCCTCACTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466568" ref_strand="+" ref_description="SGN-E466568 [cPRO-24-L12]">
      <seq>agcaagctcaaactaaggtcgccgtcatcagagttggaacacgaggaagccccctagctcttgcccaagcttatgagactcgagcaaagctaatagcctcatatcctgatctggctgaagatggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagacaatcttaccctgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="22721" stop="25551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23021" g_stop="23069" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.747" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24081" g_stop="24486" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="455" r_length="406" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25098" g_stop="25251" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="609" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E466568" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23021" e_stop="23069"/>
          <exon e_start="24081" e_stop="24486"/>
          <exon e_start="25098" e_stop="25251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAGGTACTGTCAATTATTTACCCAATCTATTTGTACAAAAATACCTAATGGGCTTTATCTCAGCTTAAAGTTACAGTCTTTCAACTGAAAATTCGGATGTAAAAAGATTGCCGCTTTTACCAATTAATTGCTGTTTAGTCTTAGGTTTTGATAGATGATTCAAGATTAAATAATTGATGCTTTATTCTTATGTTTTTCTCTTGAGTGATAAAGTAAATATGGAAAAAAATTGTATTTGAAGTACATGAACAAGTATTTATCATATTATTCACTGAGGTGTCATTTAGTTCAATAGTCTCAGAACATTTAGTAATCAGAAATTAAAATGTGGGGTTAATGGCCCCATAGTTGGACAGAATCTAGATTTCTCTCATATCCTCCAAAGTAGTATAGTTTTGAAGGATCTGACACCCACCCGTAGGCAGTTTTTAAGAGTAGAGACATAATCTACTAACCTTTTCTGCCCTGTAATGTAATGATGCTAGTTGGACATATTTCGGATTAGCTTTATCCCAATTTCTTTCCACAATAGTTAACGGTCATCTTTATGCTTTTATCGATTATTTGTTGTATTTTAGTTATGATGTGTGCTAGTGTTAGTCAAAATGTAAGCTTTTTAAGGGGATCTGGCATTATGGAGAAAACAAAAATACAACTTTGTATGCTTGACTCCTCTTTGTGCTTGCCTTTTAGAAATTAACTAATGTTAGCAAGCAGATAAACCCTTTTTTTCTCCTTGCATTTTCCCCCTGGCATATATTTTCTAGCCAATCTATGTTCTTTTTGATGAATAAAAATATCTTGTTCATACTTCCCTTGTTCCATGAACATATTTGGTAACAACCATGTAATGTATATGGGATGAATTTCAACATTGCTTTGGATTAACTCTTCGTTCTATCTCCTTCTTTGCGTGTTCGGGTGGGATGATGGAAACTGACTGATATATCTATAAAGTGCTTTTGCTAAAACTCTTCTCTTATGGATTACAATGCAATTACTTGTGTAGGACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAG</genome_strand>
        <mrna_strand>AGCAAGCTCAAACTAAGGTCGCCGTCATCAGAGTTGGAACACGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGCAAAGCTAATAGCCTCATATCCTGATCTGGCTGAAGATGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACAATCTTACCCTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691851" ref_strand="+" ref_description="SGN-E691851 [LH_Ea07D01]">
      <seq>tccgttctcctagctcttgcccaagcttatgagactcgagaaaagctaatagcctcgtttcctgacctggctgaagagggatccattgagatagtaataataaaaaccacaggtgataagatattaaggcagcctcttgcatatattggtggaaaagggttggtcatccaagaaatatatgaagccctcatcaacggcgatattgatattgctgtccgcatcaatgaaagatgtgcccacatatctgggggagaatactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttagctgcaggttccctggctgaacttccatcaggaaccacaattggtactgcttcactgaggagaaagtcccggattctccaccgctatccctcactcaatgtgttggagaatttcagaggctttgtccagacaaggttgaataaactgaatgagggagaagttcaagctacattattggcactggcagggcttaagcgtctgaagatgacacaaaatgtatcggcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcctaagtgatgacgagataatgggcaactagattgctgctttaaatcatgaagaaacgagattaccaatgctttgtgagagagcattggtgacgacctcggatgggacttgtcgcaccacaattgctgggtatgcctgacaaggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="23782" stop="25840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24081" g_stop="24486" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="412" r_length="407" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25098" g_stop="25304" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="619" r_length="207" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.775" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25415" g_stop="25540" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="745" r_length="126" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E691851" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24081" e_stop="24486"/>
          <exon e_start="25098" e_stop="25304"/>
          <exon e_start="25415" e_stop="25540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCAC-TCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAA</genome_strand>
        <mrna_strand>TCTCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGATCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGGCAGCCTCTTGCATATATTGGTGGAAAAGGGTTGGTCATCCAAGAAATATATGAAGCCCTCATCAACGGCGATATTGATATTGCTGTCCGCATCAATGAAAGATGTGCCCACATATCTGGGGGAGAATACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAGCTGCAGGTTCCCTGGCTGAACTTCCATCAGGAACCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCGGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCTTTGTCCAGACAAGGTTGAATAAACTGAATGAGGGAGAAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAAGATGACACAAAATGTATCGGCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCCTAAGTGATGACGAGATAATG..............................................................................................................GGCAACTAGATTGCTGCTTTAAATCATGAAGAAACGAGATTACCAATGCTTTGTGAGAGAGCATTGGTGACGACCTCGGATGGGACTTGTCGCACCACAATTGCTGGGTATGCCTGACAAGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311809" ref_strand="+" ref_description="SGN-E311809 [cLEZ-9-L21]">
      <seq>tcgagaaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="23811" stop="25526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24111" g_stop="24486" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25098" g_stop="25226" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="505" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E311809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24111" e_stop="24486"/>
          <exon e_start="25098" e_stop="25226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATC</genome_strand>
        <mrna_strand>TCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254793" ref_strand="+" ref_description="SGN-E254793 [cLEG-33-E4]">
      <seq>aaaagctaatagcctcgtttcctgacctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcanggtgccattggtattgcctgcagaagtgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="23816" stop="25594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24116" g_stop="24486" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25098" g_stop="25294" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="568" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E254793" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24116" e_stop="24486"/>
          <exon e_start="25098" e_stop="25294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGA</genome_strand>
        <mrna_strand>AAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCANGGTGCCATTGGTATTGCCTGCAGAAGTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343391" ref_strand="+" ref_description="SGN-E343391 [cTOF-19-G22]">
      <seq>cctggctgaagagggagccattgagatagtaataataaaaaccacaggtgataagatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggntcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagaatggagattgtatttttaaagggattagttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="23841" stop="25873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24141" g_stop="24486" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25098" g_stop="25304" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="553" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25415" g_stop="25573" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="715" r_length="162" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E343391" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24141" e_stop="24486"/>
          <exon e_start="25098" e_stop="25304"/>
          <exon e_start="25415" e_stop="25573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGG-TCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAG-ATGGAGATTGTATTTTTAAA-GGATTAGTTGCC</genome_strand>
        <mrna_strand>CCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGNTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGAATGGAGATTGTATTTTTAAAGGGATTAGTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707506" ref_strand="+" ref_description="SGN-E707506 [FA33AH01]">
      <seq>cattaaaggttaagtcagcctcttgcagatattggtggaaaacggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="23892" stop="26158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24190" g_stop="24486" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25098" g_stop="25304" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="504" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25415" g_stop="25592" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="682" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25682" g_stop="25858" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="859" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E707506" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24190" e_stop="24486"/>
          <exon e_start="25098" e_stop="25304"/>
          <exon e_start="25415" e_stop="25592"/>
          <exon e_start="25682" e_stop="25858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACA</genome_strand>
        <mrna_strand>CATTAAAGGTTAAGTCAGCCTCTTGCAGATATTGGTGGAAAACGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707597" ref_strand="+" ref_description="SGN-E707597 [FA33BG12]">
      <seq>catttgatattaagtcagcctcttgcagatattggtggaaaagggttgttcacaaaagaaatagacgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="23891" stop="26116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24190" g_stop="24486" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25098" g_stop="25304" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="504" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25415" g_stop="25592" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="682" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25682" g_stop="25816" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="817" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E707597" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24190" e_stop="24486"/>
          <exon e_start="25098" e_stop="25304"/>
          <exon e_start="25415" e_stop="25592"/>
          <exon e_start="25682" e_stop="25816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGT</genome_strand>
        <mrna_strand>CATTTGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700521" ref_strand="+" ref_description="SGN-E700521 [FA13BE02]">
      <seq>cgaagccctcatcaatggcgatattgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="23955" stop="26232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24255" g_stop="24486" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25098" g_stop="25304" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="439" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25415" g_stop="25592" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="617" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25682" g_stop="25932" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="868" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E700521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24255" e_stop="24486"/>
          <exon e_start="25098" e_stop="25304"/>
          <exon e_start="25415" e_stop="25592"/>
          <exon e_start="25682" e_stop="25932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCG</genome_strand>
        <mrna_strand>CGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342054" ref_strand="+" ref_description="SGN-E342054 [cTOF-10-L9]">
      <seq>attgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcanagatgtatcgaataacagggatagagatcgggaatctatatttcacccctactataggattatgagtctacttatccttgntactgtatcggcaatagaattgaatactttgtatgttagtgtagcattttcacttcaatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="23977" stop="26286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24277" g_stop="24486" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25098" g_stop="25304" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="417" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25415" g_stop="25440" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="443" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25441" i_stop="25681" i_length="241">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25682" g_stop="25986" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="746" r_length="303" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E342054" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24277" e_stop="24486"/>
          <exon e_start="25098" e_stop="25304"/>
          <exon e_start="25415" e_stop="25440"/>
          <exon e_start="25682" e_stop="25986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGG</genome_strand>
        <mrna_strand>ATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCA.................................................................................................................................................................................................................................................TGA-AGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCANAGATGTATCGAATAACAGGGATAGAGATCGGGAATCTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGNTACTGTATCGGCAATAGAA-TTGAATACTTTGTATGTTAGTGTAGCATTTTCACTTCAATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342053" ref_strand="+" ref_description="SGN-E342053 [cTOF-10-L7]">
      <seq>attgatattgctgtccactcaatgaaagatgtgcccacatatctgccagagaagactatcttaccgtgcaaccttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="23977" stop="26250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24277" g_stop="24486" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25098" g_stop="25304" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="417" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25415" g_stop="25440" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="443" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25441" i_stop="25681" i_length="241">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25682" g_stop="25945" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="706" r_length="263" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E342053" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24277" e_stop="24486"/>
          <exon e_start="25098" e_stop="25304"/>
          <exon e_start="25415" e_stop="25440"/>
          <exon e_start="25682" e_stop="25945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTG</genome_strand>
        <mrna_strand>ATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCA.................................................................................................................................................................................................................................................TGA-AGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570319" ref_strand="+" ref_description="SGN-E570319 [14884]">
      <seq>gaaagatgtgccacatatctgccagagaagacaatcttaccctggcaancttccacgtgaagatgtgagggatgcattcatttctttaactgcaggttcccttggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccaaattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcaaggggccattggtattgcctgtagaagtgatgacgagacaatggccaattacattgccgcgttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtattttcaaaggattggttgcctctccaggatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="24000" stop="25884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24300" g_stop="24486" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25098" g_stop="25304" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="395" r_length="207" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.775" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25415" g_stop="25584" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="566" r_length="171" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E570319" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24300" e_stop="24486"/>
          <exon e_start="25098" e_stop="25304"/>
          <exon e_start="25415" e_stop="25584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGT-GCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCC-TGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCA-GATGG</genome_strand>
        <mrna_strand>GAAAGATGTG-CCACATATCTGCCAGAGAAGACAATCTTACCCTGGCAANCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAAATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAAGGGGCCATTGGTATTGCCTGTAGAAGTGATGACGAGACAATG..............................................................................................................GCCAATTACATTGCCGCGTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTCAAAGGATTGGTTGCCTCTCCAGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467007" ref_strand="+" ref_description="SGN-E467007 [cPRO-26-D18]">
      <seq>gggatgcattcatttctttaactgcaggttccctggctgaacttccatcaggaagcacaattggtactgcttcactgaggagaaagtcccagattctccaccgctatccctcactcaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcaaggggccattggtattgcctgtagaagtgatgacgagacaatggccaattacattgccgcgttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtattttcaaaggattggttgcctctccagatggaactcgagttattgaaacctctagaaagggaccctatacatctgaagacatgatacggatgggtgaagatgctggccaggaactactctccaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctacctatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="24068" stop="26133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24368" g_stop="24486" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25098" g_stop="25304" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="326" r_length="207" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.775" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25415" g_stop="25592" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="504" r_length="178" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89">
            <donor d_prob="0.898" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25682" g_stop="25835" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="658" r_length="154" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E467007" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24368" e_stop="24486"/>
          <exon e_start="25098" e_stop="25304"/>
          <exon e_start="25415" e_stop="25592"/>
          <exon e_start="25682" e_stop="25835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAATGTAAGTCTATTACCTATCACATCAAAGTCTCTGAAGAAGACCCATTGATCTCTGAGTGTGTGTTGATATCAGAAACAAAGTGAACTAAGAGTCTCCGTAAATTTTTCCATCAAGCTGCAGCCATAATTTATTTGAGTCATTGCTTCATGTATTGTGTTGGTATATATATGCCTTCTATGAAGGTAAAACCTTGAAAGTTAAATAGTTTACTTATACTACTACTTGGAGATTGTTTGCAACAACTAGGAATATGTTGCAATGGGCCAAATAATAAAAGAACTTCTGTGTGCTCAAAAAGATGGGTAGGATGACCTACGAGTGGAAAAAGAGTAAATTGAGGATTGTGTATTTCTTGTTGTGATATGTTACATAGCTTGGTATGCTCCAGGAGCAGTAATTGTTTTCTTGATAAGCCAAATGCGAAGCTCAGGTTTTCTATATCTGAATATCTTTTAGATGAAGCAAAATTTGTGGTGAAATTTTTTATGGTGGTTACTTCTGGCCTGAATTTTCTTATTTAGCTCAGCTCTGCCAATCTAACAACTTTTCCTCTTTGCTTTTATTTAGTTTGACAAGTCATGCTAATTATTTTATGTGAATTTTGTTTAAAGGTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAA</genome_strand>
        <mrna_strand>GGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAAGGGGCCATTGGTATTGCCTGTAGAAGTGATGACGAGACAATG..............................................................................................................GCCAATTACATTGCCGCGTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTCAAAGGATTGGTTGCCTCTCCAGATGGAACTCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCCTATACATCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTCTCCAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTACCTATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420060" ref_strand="+" ref_description="SGN-E420060 [STM-30-L13]">
      <seq>cgctatccctcacttaatgtgttggagaatttcagaggcaatgtccagacaaggttgaagaaactgaatgagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacggaaaatgtatcatcgattctttctatagaggatatgctaccagctgttgctcaaggggccattggtattgcctgtagaagtgatgacgagacaatggccaattacattgccgcgttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtattttcaaaggattggttgcctctccagatggaactcgagttattgaaacctctagaaagggaccctatacatctgaagacatgatacggatgggtgaagatgctggccaggaactactctccaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcccatgaatctgatgtatcgaataacagggatagagatcggaattttatatttcacccctacgataggattgagtccacttatccttgtaactgtatcggcaatagaatttgaatacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="24792" stop="26253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25098" g_stop="25304" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="225" r_length="207" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.775" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25415" g_stop="25592" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="403" r_length="178" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89">
            <donor d_prob="0.898" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25682" g_stop="25953" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="667" r_length="264" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E420060" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25098" e_stop="25304"/>
          <exon e_start="25415" e_stop="25592"/>
          <exon e_start="25682" e_stop="25953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTT</genome_strand>
        <mrna_strand>GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACGGAAAATGTATCATCGATTCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAAGGGGCCATTGGTATTGCCTGTAGAAGTGATGACGAGACAATG..............................................................................................................GCCAATTACATTGCCGCGTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTCAAAGGATTGGTTGCCTCTCCAGATGGAACTCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCCTATACATCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTCTCCAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCCATG---AAT-C--TGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACGATAGGA-T-TGAGTCCACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462594" ref_strand="-" ref_description="SGN-E462594 [cPRO-12-K19]">
      <seq>gaatttcagaggcaatgttcagacaaggtgaaagaagctgaatgagggggtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcaaggggccattggtattgcctgcagaagtgatgatgagacaatggccaattacattgccgcgttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgactttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtattttcaaaggattggttgcctctccagatggaactcgagttattgaaacctctagaaagggaccctatacatctgaagacatgatacggatgggtgaagatgctggccaagaactactctccaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaatctgatgtatcgaataacagggatagagatcggaattttatatttcacccctacgataggattgagtccacttatcattgtaactgtatcggcaatagagtttgaatactttgtataatagtgtagcatttccacttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="24806" stop="26281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25106" g_stop="25304" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.775" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25415" g_stop="25592" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="377" r_length="178" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89">
            <donor d_prob="0.898" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25682" g_stop="25980" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="668" r_length="291" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="681"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E462594" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462594" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25106" e_stop="25304"/>
          <exon e_start="25415" e_stop="25592"/>
          <exon e_start="25682" e_stop="25980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCA</genome_strand>
        <mrna_strand>GAATTTCAGAGGCAATGTTCAGACAAGGTGAAAGAAGCTGAATGAGGGGGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAAGGGGCCATTGGTATTGCCTGCAGAAGTGATGATGAGACAATG..............................................................................................................GCCAATTACATTGCCGCGTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACTTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTCAAAGGATTGGTTGCCTCTCCAGATGGAACTCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCCTATACATCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAAGAACTACTCTCCAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATG---AAT-C--TGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACGATAGGA-T-TGAGTCCACTTATCATTGTAACTGTATCGGCAATAGAGTTTGAATACTTTGTATAATAGTGTAGCATTTCCACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711641" ref_strand="+" ref_description="SGN-E711641 [FB02CC06]">
      <seq>cccctgacaaggttgaagaaactgaatgagggagtagttcaccctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcnnnaanaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannttctcggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="24824" stop="26279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25122" g_stop="25304" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25415" g_stop="25592" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="361" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25682" g_stop="25980" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="660" r_length="299" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="703"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E711641" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25122" e_stop="25304"/>
          <exon e_start="25415" e_stop="25592"/>
          <exon e_start="25682" e_stop="25980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCA</genome_strand>
        <mrna_strand>CCCCTGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCACCCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343465" ref_strand="+" ref_description="SGN-E343465 [cTOF-19-A23]">
      <seq>gagggagtagttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgtttagtgtagcatttccacttcatttgggagtgtatccgaagaatggntgaatgtttgcagatttgtagaaaaanttgtactggcggatttgggattgtttttaatcactgtgagtaatttgtgcaactgttgtaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="24849" stop="26393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25149" g_stop="25304" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25415" g_stop="25592" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="334" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25682" g_stop="26093" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="750" r_length="416" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E343465" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25149" e_stop="25304"/>
          <exon e_start="25415" e_stop="25592"/>
          <exon e_start="25682" e_stop="26093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATG-TTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGG-TGAATGTTTGCAGATTTGTAG-AAAAGTTGTACTGGCGGATTT-GGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCT</genome_strand>
        <mrna_strand>GAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTTAGTGTAGCATTTCCACTTCATTTGGGAGTGTATCCGAAGAATGGNTGAATGTTTGCAGATTTGTAGAAAAANTTGTACTGGCGGATTTGGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373525" ref_strand="+" ref_description="SGN-E373525 [TUS-31-J14](-)">
      <seq>agttcaagctacattattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="24857" stop="26359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25157" g_stop="25304" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25415" g_stop="25592" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="326" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25682" g_stop="26066" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="711" r_length="385" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E373525" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25157" e_stop="25304"/>
          <exon e_start="25415" e_stop="25592"/>
          <exon e_start="25682" e_stop="26066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGT</genome_strand>
        <mrna_strand>AGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373354" ref_strand="+" ref_description="SGN-E373354 [TUS-31-J15](-)">
      <seq>ttattggcactggcagggcttaagcgtctgaatatgacagaaaatgtatcatcgatcctttctatagaggatatgctaccagctgttgctcagggtgccattggtattgcctgcagaagtgatgacgagacaatggccaactacattgctgctttaaatcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="24870" stop="26359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25170" g_stop="25304" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25415" g_stop="25592" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="313" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25682" g_stop="26065" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="697" r_length="384" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E373354" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25170" e_stop="25304"/>
          <exon e_start="25415" e_stop="25592"/>
          <exon e_start="25682" e_stop="26065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATGGTATTTAGCACTCTTCTCTGTTATTACAAATACATTTCCTGCTCTACCATTGCTCATATCTCCTCTTTCGAGGGCTTTATTTCGCTCATATTTATCGGATGCAATTATAGGCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTG</genome_strand>
        <mrna_strand>TTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG..............................................................................................................GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217416" ref_strand="+" ref_description="SGN-E217416 [cLEL-21-K13](-)">
      <seq>atcatgaagaaaccagattagcaatagtttgtgagagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="25137" stop="26329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25437" g_stop="25592" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25682" g_stop="26029" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="504" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="505" polyA_stop="521"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E217416" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25437" e_stop="25592"/>
          <exon e_start="25682" e_stop="26029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAA</genome_strand>
        <mrna_strand>ATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292050" ref_strand="+" ref_description="SGN-E292050 [cLET-1-A3](-)">
      <seq>gagagcatttttgacgaccttggatgggtcttgtcgcaccccaattgctggatatgcctgtgtaggtaaagatgaagattgtatttttaaaggattagttgcctctccagatggaacgtgagttatttacccctctagaaagggaccttatacgtctgaagacatcatgcggatgggtcaagatcctggccaggaacttactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcaccccaactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttctatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="25171" stop="26359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25471" g_stop="25592" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89">
            <donor d_prob="0.898" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25682" g_stop="26066" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="508" r_length="386" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E292050" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25471" e_stop="25592"/>
          <exon e_start="25682" e_stop="26066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAAC-TACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGT</genome_strand>
        <mrna_strand>GAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGATATGCCTGTGTAGGTAAAGATGAAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGTGAG.........................................................................................TTATTTACCCCTCTAGAAAGGGACCTTATACGTCTGAAGACATCATGCGGATGGGTCAAGATCCTGGCCAGGAACTTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCAACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCTATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342165" ref_strand="+" ref_description="SGN-E342165 [cTOF-10-J11]">
      <seq>gcaccccaattgctggctatgcctgtcgaggtgaagatggagattgtatttttaaaggattagttgcctctccagatggaacgcgagttattgaaacctctagaaagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaatcactgtgagtaatttgtgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="25206" stop="26381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25506" g_stop="25592" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25682" g_stop="26090" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="496" r_length="409" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E342165" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25506" e_stop="25592"/>
          <exon e_start="25682" e_stop="26090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAGGTAAACGTTACTTCTTAGTTACAGAATTCTGAGGGATGTGTGAGTTACCTATTCTTTATGTTTATTTGATGTATAATCTTCAATTTCAGTTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAA</genome_strand>
        <mrna_strand>GCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG.........................................................................................TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217327" ref_strand="+" ref_description="SGN-E217327 [cLEL-21-K15](-)">
      <seq>aagggaccttatacgtctgaagacatgatacggatgggtgaagatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="25399" stop="26329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25699" g_stop="26029" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="348"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E217327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25699" e_stop="26029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAA</genome_strand>
        <mrna_strand>AAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215981" ref_strand="+" ref_description="SGN-E215981 [cLEL-13-F23](-)">
      <seq>cggatgggtgaaaatgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccgcttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaaaaagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="25429" stop="26329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25729" g_stop="26029" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="302" polyA_stop="319"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E215981" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25729" e_stop="26029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAA</genome_strand>
        <mrna_strand>CGGATGGGTGAAAATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCGCTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229840" ref_strand="+" ref_description="SGN-E229840 [cLEL-33-L23](-)">
      <seq>atgctggccaggaactactttcgaaagcaggtccaggattttttggcaactgagtaaagcttatgctcttatggtcgacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaatcactgtgagtaatttgtgcaactgttgtaagctaacgaaagagtatttcatcgttggcttaatttatgcaaggggtttggtccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="25442" stop="26446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25742" g_stop="26145" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="422"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E229840" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25742" e_stop="26145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</genome_strand>
        <mrna_strand>ATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224869" ref_strand="+" ref_description="SGN-E224869 [cLEL-27-C9](-)">
      <seq>taaagcttatgctcttatggtcgaacctctgcctatgaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaatcactgtgagtaatttgtgcaactgttgtaagctaacgaaagagtatttcatcgttggcataaattatgcaaggggtttggcccgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="25496" stop="26443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25796" g_stop="26139" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="369"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E224869" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25796" e_stop="26139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCTTATGCTCTTATGGTCG-ACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTG</genome_strand>
        <mrna_strand>TAAAGCTTATGCTCTTATGGTCGAACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCATAAATTATGCAAGGGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230340" ref_strand="+" ref_description="SGN-E230340 [cLEL-33-L23](-)">
      <seq>cctctgcctatgaaaaaatgcagagatgtatcgaataacagggatagagatcggaattttatatttcacccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaatcactgtgagtaatttgtgcaactgttgtaagctaacgaaagagtatttcatcgttggcttaatttatgcaaggggtttggtccaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="25520" stop="26445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25820" g_stop="26145" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="345"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E230340" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25820" e_stop="26145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGCCTATGAAAAA-TGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</genome_strand>
        <mrna_strand>CCTCTGCCTATGAAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224369" ref_strand="+" ref_description="SGN-E224369 [cLEL-27-C9](-)">
      <seq>gcagagatgtatcgaataacagggatagagatcggaatttttatatttcaccccctactataggattatgagtctacttatccttgtaactgtatcggcaatagaatttgaatactttgtatgttagtgtagcatttccacttcaatttggagtgtatccgaggaatggtgaatgtttgcagatttgtagaaaagttgtactggcggatttggattgtttttaatcactgtgagtaatttgtgcaactgttgtaagctaacgaaagagtatttcatcgttggcttaatttatgcaaggggtttggtccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="25538" stop="26446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25838" g_stop="26145" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="311" polyA_stop="328"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E224369" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25838" e_stop="26145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGATGTATCGAATAACAGGGATAGAGATCGGAA-TTTTATATTTCA-CCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</genome_strand>
        <mrna_strand>GCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTTATATTTCACCCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344845" ref_strand="+" ref_description="SGN-E344845 [cTOF-21-K22]">
      <seq>gcaactgagtttccccatacaatcctctcttgtgcagtatcttctaaagttgaaatctcgtatagaaaaatgaaagtacactcctgcattcatcctcttccctctactccctccaccggaattttggtctctgccggtcctgcggaagctaagcttgctgctaacaccagaaagctttattctttaactttgaattcctctaattatgtcccatttccttataaagatcagaaattttccagaagcagctctacggatttttctagaacggctatcggttcgaatgtaagtgaagatacagatgacatgtttgatgatctcctaagaacgcatggcaaagtggtatacaaaagaaatgaccaaaaacctgcaagtgaggagattgatgatgatgctgaaagcctatcgtttgcaatggctgtggctaaagttgcaagtgatgtcaaggctggaaatataaaggtcctctttgtcaagcctctagtatattggactcggtttttcattattgctactgcattctctcgcccacagattgatgccattgggaccagagtaagagatatggctgaggaacaatatggaagagttgcttctggagattcaaaacccaactcgtggacactactggactttggtgatngtcgttgttcatctatttcttcctccgcagcgtgagtactacaacctgnaagaattctatggcaatgcagcatccatcgaactaccatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="26412" stop="30350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26712" g_stop="26993" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26994" i_stop="27935" i_length="942">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27936" g_stop="28062" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="409" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28063" i_stop="28913" i_length="851">
            <donor d_prob="0.363" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28914" g_stop="29052" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="548" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29053" i_stop="29188" i_length="136">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29189" g_stop="29277" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="637" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29278" i_stop="29954" i_length="677">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29955" g_stop="30050" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="734" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E344845" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26712" e_stop="26993"/>
          <exon e_start="27936" e_stop="28062"/>
          <exon e_start="28914" e_stop="29052"/>
          <exon e_start="29189" e_stop="29277"/>
          <exon e_start="29955" e_stop="30050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTGAGTTTCCCCATACAATCCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCGGTATTCCCTAAAACTTCAAGCTTCCGCCCCCCCCCCCCCCCTTTTTTTTTCTTTGTGAAGCTACAGCACTATTTGCAAATTGTTTTGCATTTTGCTGTTGTATTTTGTTGAAAAATTATCCCTTTTGTGGTTCAGAAGGGCATTCTTGTGAATTGAACGCCAATTTCTTATTTGAATTCTACACAAGAACCTGTTAACTAGCCGTCTCAAATTTTATTTTTCTAGTTGCAAAGTATGTTTTGTTGGATTTTCCAGCTAACTCAAATTATAATCTTGTCTTTGCTAATAGAAAGAGGAAGAGTTAACTGCATTTCACTCTTAATACAACTTTACTGCTCCTTCTGAAGACATTGATTAAGAAAATCTGTAGTCTTTGCCTTTATGTTTGGCTGTTGGATTAGTTGTATTAGATATGATAAGGTCTCTGTAAAAGTGAGTGAACTTGGAAAAAGAGATAGTTTATGCTCAAGAAAGTGAATTGTGACATCTTAAGGTTTTTGTATATGTCCAAACTATCTATCTCTCTCTAAAATGTCTCACTTAATGAACACTCCACTAATTGGAGAAACAAGGGTGAATTTTTGGGAGAAAAAGCAATAAATGCTTATTGTTTTTCTAGAACATCCAATATTTTAGAACAAATCCTTTGCCAAAAATGGCAAATATGAACCGGCAGTAGTACTATGTACTTCCCAGAAAAGAGTTTTTTTTCAAGGTGAACAACTACCATAAACTAGCCGACCTCAAGTTGTTTGGATTGAGATATAGTTGTCTGTTTGAACAACTACCTAAACACTGAATATAGTCTTTAGTAGTCTTAGTTCAAAGTCTATTCTTGAGGCTCGTTACGTGTGATTTCTTCTGGTTAGTCTGTGATTCATTATGAATGAATGATAATCTTTCTGCTTGATGCTGCACTTAACATGAATACCTTTGGTACAGAATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGTGTAAGTTGTTCTAAATTGTTAGTTGGATTGACTACTTCTCAGTTGCCGAAGCTTTGAGCCTCGTAGCTTATAGTTTTACTTTTCATGTTGGCCTGTACCTCTTAGCTCATAGTTTTATCTTAGGAACATCGGTTAGTTTTATGATATCCAAGAACGTGTTGACCAACTTTAATTTCATAACTCATGAGCATCTATGTTCTTGTTTTTGTTATTTTCCTTTGGGGAAAAAAGAGTATTTTCCCCTATGATTGATGTACTTACATTATACCTCTATGTAGTGAAAAAATAAGCTGAGAACCCTTTTAGCTTAAAAACCATCCATTTTACTCTCTTAATCAATTCCATACATGTCTCATTTTGTTGTTCCTTCAAAAATCTCATTGAAAATGTCATGAATATCCTCCATTCTTATGTGTAGGAACTCTTTGCATTAAAATGTTCATGTTCTTTCATTGCCCTTCAATCTAGTAGTAGTTCTACCAGAAGGTTTTTGAGATAATATTATTTGTATCAGAACTCTCTAACATAATTTCAAGTTTTTTTACATTGATATAGTTGTTAGTTATATTATAGAATTTAAGGTAGTATAGCCCAAATGTAATCGTAATTTGATTCGCATCATTTTGCTTAATATACTTTTGAGTTGTTTAGGTGACATTTACTGATAATGTTGCTTACTTTTAATGTATATTAGTGGTGAAATATTTTTACCTAAACTACTGAAGCATCATAAACAAACTATAGAAAATTATACAAGATGAAACCCAAAAAAGCACTTTAGAATCTGAGAATATGAATATGATGATTGACTTTAGGCAGAAGTCGTTGACAGTGCTGTTCCCTCTATGCAGTTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGGGTATGATATCATATTCTGAGGTTTTCTATTGAATATTAACCAGCAGCAGTATAAATAATCGCAAATGAATAAATAGACGAAGAGGATTGACGATTATTTTTTGTAATTCTGAATTTTCTCTAAATTTCTCATAAAGGACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTGGTAAGTAATTCATGGTACTTTAATAGTCCTGCTATTACTTGTGTCATGGCTGAAGAATTTCACTGGATATGAATTTATTATTGCCCTTGTTCTTGATTCACCCCTATTTTTTAATTTCATATGTGGACAAGTGCTGTTAAGGGGCAATATCCTTCTGCACATTAGGATTAGAAGGGAGTAACTTTGTTGTTGACTAACGACTACTTACTGTAACTGTGTTGCTTCACATTGTCCAACATAACTTACCCAAACATAGTGCTTAACTGTTACAAGTTATCAAACCATCAAGCAACTTGCAAAAATCCGTTATTATTCAGTTGAGCAAGAAAAGGAGGTTTAAAGGTTCAAAGCACAGAGATCTCTGACCCAGCCAGAGAAGCATTAGTTTATATCGTGCCCTGCTTCATATGGGTAGTGCTTTTCAAAAATCATCCCATGCATAAGGTTAACATCTGGTTTCAACATGGACTAGCTATCCCAGGGTGGCCAAACATGTTATGGCCAGGGTCAGAAGAAATGTTACCTCCAAAGCTATAAGGACTAAACATGAGTGGTTTGTTTTGATAAGGCGATGCTATATTATGTGCTACTATTTGACCCTTGCAGCAACCATGTACTATGCCATGAAATGTTGTTCTTCTTGCTGATATGTCGCTCCATGCCTCTCTTAATTACAGGTGAT-GTCGTTGTTCATCTATTTCTTCCTCCGCAGCGTGAGTACTACAACCTGGAAGAATTCTATGGCAATGCAGCATCCATCGAACTACCATTTG</genome_strand>
        <mrna_strand>GCAACTGAGTTTCCCCATACAATCCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAAATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGG........................................................................................................................................GACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATNGTCGTTGTTCATCTATTTCTTCCTCCGCAGCGTGAGTACTACAACCTGNAAGAATTCTATGGCAATGCAGCATCCATCGAACTACCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268156" ref_strand="+" ref_description="SGN-E268156 [cLEI-15-O4]">
      <seq>cctctcttgtgcagtatcttctaaagttgaaatctcgtatagaaaaatgaaagtacactcctgcattcatcctcttccctctactccctccaccggaattttggtctctgccggtcctgcggaagctaagcttgctgctaacaccagaaagctttattctttaactttgaattcctctaattatgtcccatttccttataaagatcagaaattttccagaagcagctctacggatttttctagaacggctatcggttcgaatgtaagtgaagatacagatgacatgtttgatgatctcctaagaacgcatggcaaagtggtatacaaaagaaatgaccaaaaacctgcaagtgaggagattgatgatgatgctgaaagcctatcgtttgcaatggctgtggctaaagttgcaagtgatgtcaaggctggagatataaaggtcctctttgtcaagcctctagtatattggactcggtttttcattattgctactgcattctctcgcccacagattgatgccattgggaccagagtaagagatatggctgaggaacaatatggaagagttgcttctggagattcaaaacccaactcgtggacactactggactttggtgatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="26435" stop="29583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26735" g_stop="26993" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26994" i_stop="27935" i_length="942">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27936" g_stop="28062" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="386" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28063" i_stop="28913" i_length="851">
            <donor d_prob="0.363" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28914" g_stop="29052" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="525" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29053" i_stop="29188" i_length="136">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29189" g_stop="29277" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="614" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E268156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26735" e_stop="26993"/>
          <exon e_start="27936" e_stop="28062"/>
          <exon e_start="28914" e_stop="29052"/>
          <exon e_start="29189" e_stop="29277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCGGTATTCCCTAAAACTTCAAGCTTCCGCCCCCCCCCCCCCCCTTTTTTTTTCTTTGTGAAGCTACAGCACTATTTGCAAATTGTTTTGCATTTTGCTGTTGTATTTTGTTGAAAAATTATCCCTTTTGTGGTTCAGAAGGGCATTCTTGTGAATTGAACGCCAATTTCTTATTTGAATTCTACACAAGAACCTGTTAACTAGCCGTCTCAAATTTTATTTTTCTAGTTGCAAAGTATGTTTTGTTGGATTTTCCAGCTAACTCAAATTATAATCTTGTCTTTGCTAATAGAAAGAGGAAGAGTTAACTGCATTTCACTCTTAATACAACTTTACTGCTCCTTCTGAAGACATTGATTAAGAAAATCTGTAGTCTTTGCCTTTATGTTTGGCTGTTGGATTAGTTGTATTAGATATGATAAGGTCTCTGTAAAAGTGAGTGAACTTGGAAAAAGAGATAGTTTATGCTCAAGAAAGTGAATTGTGACATCTTAAGGTTTTTGTATATGTCCAAACTATCTATCTCTCTCTAAAATGTCTCACTTAATGAACACTCCACTAATTGGAGAAACAAGGGTGAATTTTTGGGAGAAAAAGCAATAAATGCTTATTGTTTTTCTAGAACATCCAATATTTTAGAACAAATCCTTTGCCAAAAATGGCAAATATGAACCGGCAGTAGTACTATGTACTTCCCAGAAAAGAGTTTTTTTTCAAGGTGAACAACTACCATAAACTAGCCGACCTCAAGTTGTTTGGATTGAGATATAGTTGTCTGTTTGAACAACTACCTAAACACTGAATATAGTCTTTAGTAGTCTTAGTTCAAAGTCTATTCTTGAGGCTCGTTACGTGTGATTTCTTCTGGTTAGTCTGTGATTCATTATGAATGAATGATAATCTTTCTGCTTGATGCTGCACTTAACATGAATACCTTTGGTACAGAATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGTGTAAGTTGTTCTAAATTGTTAGTTGGATTGACTACTTCTCAGTTGCCGAAGCTTTGAGCCTCGTAGCTTATAGTTTTACTTTTCATGTTGGCCTGTACCTCTTAGCTCATAGTTTTATCTTAGGAACATCGGTTAGTTTTATGATATCCAAGAACGTGTTGACCAACTTTAATTTCATAACTCATGAGCATCTATGTTCTTGTTTTTGTTATTTTCCTTTGGGGAAAAAAGAGTATTTTCCCCTATGATTGATGTACTTACATTATACCTCTATGTAGTGAAAAAATAAGCTGAGAACCCTTTTAGCTTAAAAACCATCCATTTTACTCTCTTAATCAATTCCATACATGTCTCATTTTGTTGTTCCTTCAAAAATCTCATTGAAAATGTCATGAATATCCTCCATTCTTATGTGTAGGAACTCTTTGCATTAAAATGTTCATGTTCTTTCATTGCCCTTCAATCTAGTAGTAGTTCTACCAGAAGGTTTTTGAGATAATATTATTTGTATCAGAACTCTCTAACATAATTTCAAGTTTTTTTACATTGATATAGTTGTTAGTTATATTATAGAATTTAAGGTAGTATAGCCCAAATGTAATCGTAATTTGATTCGCATCATTTTGCTTAATATACTTTTGAGTTGTTTAGGTGACATTTACTGATAATGTTGCTTACTTTTAATGTATATTAGTGGTGAAATATTTTTACCTAAACTACTGAAGCATCATAAACAAACTATAGAAAATTATACAAGATGAAACCCAAAAAAGCACTTTAGAATCTGAGAATATGAATATGATGATTGACTTTAGGCAGAAGTCGTTGACAGTGCTGTTCCCTCTATGCAGTTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGGGTATGATATCATATTCTGAGGTTTTCTATTGAATATTAACCAGCAGCAGTATAAATAATCGCAAATGAATAAATAGACGAAGAGGATTGACGATTATTTTTTGTAATTCTGAATTTTCTCTAAATTTCTCATAAAGGACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTG</genome_strand>
        <mrna_strand>CCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGG........................................................................................................................................GACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265536" ref_strand="+" ref_description="SGN-E265536 [cLEI-14-H7]">
      <seq>cctctcttgtgcagtatcttgtaaagttgaaatctcgtatagaaaaatgaaagtacactcctgcattcatcctcttccctctactccctccaccggaattttggtctctgccggtcctgcggaagctaagcttgctgctaacaccagaaagctttattctttaactttgaattcctctaattatgtcccatttccttataaagatcagaaattttccagaagcagctctacggatttttctagaacggctatcggttcgaatgtaagtgaagatacagatgacatgtttgatgatctcctaagaacgcatggcaaagtggtatacaaaagaaatgaccaaaaacctgcaagtgaggagattgatgatgatgctgaaagcctatcgtttgcaatggctgtggctaaagttgcaagtgatgtcaaggctggagatataaaggtcctctttgtcaagcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="26435" stop="29286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26735" g_stop="26993" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26994" i_stop="27935" i_length="942">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27936" g_stop="28062" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="386" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28063" i_stop="28913" i_length="851">
            <donor d_prob="0.363" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28914" g_stop="28986" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="459" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E265536" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26735" e_stop="26993"/>
          <exon e_start="27936" e_stop="28062"/>
          <exon e_start="28914" e_stop="28986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCGGTATTCCCTAAAACTTCAAGCTTCCGCCCCCCCCCCCCCCCTTTTTTTTTCTTTGTGAAGCTACAGCACTATTTGCAAATTGTTTTGCATTTTGCTGTTGTATTTTGTTGAAAAATTATCCCTTTTGTGGTTCAGAAGGGCATTCTTGTGAATTGAACGCCAATTTCTTATTTGAATTCTACACAAGAACCTGTTAACTAGCCGTCTCAAATTTTATTTTTCTAGTTGCAAAGTATGTTTTGTTGGATTTTCCAGCTAACTCAAATTATAATCTTGTCTTTGCTAATAGAAAGAGGAAGAGTTAACTGCATTTCACTCTTAATACAACTTTACTGCTCCTTCTGAAGACATTGATTAAGAAAATCTGTAGTCTTTGCCTTTATGTTTGGCTGTTGGATTAGTTGTATTAGATATGATAAGGTCTCTGTAAAAGTGAGTGAACTTGGAAAAAGAGATAGTTTATGCTCAAGAAAGTGAATTGTGACATCTTAAGGTTTTTGTATATGTCCAAACTATCTATCTCTCTCTAAAATGTCTCACTTAATGAACACTCCACTAATTGGAGAAACAAGGGTGAATTTTTGGGAGAAAAAGCAATAAATGCTTATTGTTTTTCTAGAACATCCAATATTTTAGAACAAATCCTTTGCCAAAAATGGCAAATATGAACCGGCAGTAGTACTATGTACTTCCCAGAAAAGAGTTTTTTTTCAAGGTGAACAACTACCATAAACTAGCCGACCTCAAGTTGTTTGGATTGAGATATAGTTGTCTGTTTGAACAACTACCTAAACACTGAATATAGTCTTTAGTAGTCTTAGTTCAAAGTCTATTCTTGAGGCTCGTTACGTGTGATTTCTTCTGGTTAGTCTGTGATTCATTATGAATGAATGATAATCTTTCTGCTTGATGCTGCACTTAACATGAATACCTTTGGTACAGAATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGTGTAAGTTGTTCTAAATTGTTAGTTGGATTGACTACTTCTCAGTTGCCGAAGCTTTGAGCCTCGTAGCTTATAGTTTTACTTTTCATGTTGGCCTGTACCTCTTAGCTCATAGTTTTATCTTAGGAACATCGGTTAGTTTTATGATATCCAAGAACGTGTTGACCAACTTTAATTTCATAACTCATGAGCATCTATGTTCTTGTTTTTGTTATTTTCCTTTGGGGAAAAAAGAGTATTTTCCCCTATGATTGATGTACTTACATTATACCTCTATGTAGTGAAAAAATAAGCTGAGAACCCTTTTAGCTTAAAAACCATCCATTTTACTCTCTTAATCAATTCCATACATGTCTCATTTTGTTGTTCCTTCAAAAATCTCATTGAAAATGTCATGAATATCCTCCATTCTTATGTGTAGGAACTCTTTGCATTAAAATGTTCATGTTCTTTCATTGCCCTTCAATCTAGTAGTAGTTCTACCAGAAGGTTTTTGAGATAATATTATTTGTATCAGAACTCTCTAACATAATTTCAAGTTTTTTTACATTGATATAGTTGTTAGTTATATTATAGAATTTAAGGTAGTATAGCCCAAATGTAATCGTAATTTGATTCGCATCATTTTGCTTAATATACTTTTGAGTTGTTTAGGTGACATTTACTGATAATGTTGCTTACTTTTAATGTATATTAGTGGTGAAATATTTTTACCTAAACTACTGAAGCATCATAAACAAACTATAGAAAATTATACAAGATGAAACCCAAAAAAGCACTTTAGAATCTGAGAATATGAATATGATGATTGACTTTAGGCAGAAGTCGTTGACAGTGCTGTTCCCTCTATGCAGTTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCT</genome_strand>
        <mrna_strand>CCTCTCTTGTGCAGTATCTTGTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441862" ref_strand="+" ref_description="SGN-E441862 [cSTA-31-O14]">
      <seq>aactcttgagcagtatcttcaaaagtttaaataacgaaccccatattgaaaaatgaaagtacactcctgcattcatcctcttccctgcactccctccaccggaattttggtctccggcggtcgtacggaagctaagcttgctgctaacaccagaaagctttattctttaactgtgaattcctctaattatgccccatttcattataaagatctgaaattttccagaagcagctctatggatttttctagaatggcaattggttcgaatgtaagtgaagatacagatgacatgtttgatgatctcctaagaacgcatgggaaagtggtatacaaaagaaatgaccaaaaacctgcaagtgaggagattgatgatgatgctgaaagcctatcctttgcaatggctgtggctaaagttgcaagtgatgtcaaggctggagatataaaggttctctttgtcaagcctctagtatattggactcggttnttcattattgctactgcattctctcgcccacagattgatgccattgggaccagagtaagagatatggctgaggaacaatatggaagagttgcttctggagattcaaaacccaactcgtggacgctactagactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="26465" stop="29577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26777" g_stop="26993" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="265" r_length="217" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26994" i_stop="27935" i_length="942">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27936" g_stop="28062" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="392" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28063" i_stop="28913" i_length="851">
            <donor d_prob="0.363" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28914" g_stop="29052" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="531" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29053" i_stop="29188" i_length="136">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29189" g_stop="29277" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="620" r_length="89" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E441862" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26777" e_stop="26993"/>
          <exon e_start="27936" e_stop="28062"/>
          <exon e_start="28914" e_stop="29052"/>
          <exon e_start="29189" e_stop="29277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCGGTATTCCCTAAAACTTCAAGCTTCCGCCCCCCCCCCCCCCCTTTTTTTTTCTTTGTGAAGCTACAGCACTATTTGCAAATTGTTTTGCATTTTGCTGTTGTATTTTGTTGAAAAATTATCCCTTTTGTGGTTCAGAAGGGCATTCTTGTGAATTGAACGCCAATTTCTTATTTGAATTCTACACAAGAACCTGTTAACTAGCCGTCTCAAATTTTATTTTTCTAGTTGCAAAGTATGTTTTGTTGGATTTTCCAGCTAACTCAAATTATAATCTTGTCTTTGCTAATAGAAAGAGGAAGAGTTAACTGCATTTCACTCTTAATACAACTTTACTGCTCCTTCTGAAGACATTGATTAAGAAAATCTGTAGTCTTTGCCTTTATGTTTGGCTGTTGGATTAGTTGTATTAGATATGATAAGGTCTCTGTAAAAGTGAGTGAACTTGGAAAAAGAGATAGTTTATGCTCAAGAAAGTGAATTGTGACATCTTAAGGTTTTTGTATATGTCCAAACTATCTATCTCTCTCTAAAATGTCTCACTTAATGAACACTCCACTAATTGGAGAAACAAGGGTGAATTTTTGGGAGAAAAAGCAATAAATGCTTATTGTTTTTCTAGAACATCCAATATTTTAGAACAAATCCTTTGCCAAAAATGGCAAATATGAACCGGCAGTAGTACTATGTACTTCCCAGAAAAGAGTTTTTTTTCAAGGTGAACAACTACCATAAACTAGCCGACCTCAAGTTGTTTGGATTGAGATATAGTTGTCTGTTTGAACAACTACCTAAACACTGAATATAGTCTTTAGTAGTCTTAGTTCAAAGTCTATTCTTGAGGCTCGTTACGTGTGATTTCTTCTGGTTAGTCTGTGATTCATTATGAATGAATGATAATCTTTCTGCTTGATGCTGCACTTAACATGAATACCTTTGGTACAGAATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGTGTAAGTTGTTCTAAATTGTTAGTTGGATTGACTACTTCTCAGTTGCCGAAGCTTTGAGCCTCGTAGCTTATAGTTTTACTTTTCATGTTGGCCTGTACCTCTTAGCTCATAGTTTTATCTTAGGAACATCGGTTAGTTTTATGATATCCAAGAACGTGTTGACCAACTTTAATTTCATAACTCATGAGCATCTATGTTCTTGTTTTTGTTATTTTCCTTTGGGGAAAAAAGAGTATTTTCCCCTATGATTGATGTACTTACATTATACCTCTATGTAGTGAAAAAATAAGCTGAGAACCCTTTTAGCTTAAAAACCATCCATTTTACTCTCTTAATCAATTCCATACATGTCTCATTTTGTTGTTCCTTCAAAAATCTCATTGAAAATGTCATGAATATCCTCCATTCTTATGTGTAGGAACTCTTTGCATTAAAATGTTCATGTTCTTTCATTGCCCTTCAATCTAGTAGTAGTTCTACCAGAAGGTTTTTGAGATAATATTATTTGTATCAGAACTCTCTAACATAATTTCAAGTTTTTTTACATTGATATAGTTGTTAGTTATATTATAGAATTTAAGGTAGTATAGCCCAAATGTAATCGTAATTTGATTCGCATCATTTTGCTTAATATACTTTTGAGTTGTTTAGGTGACATTTACTGATAATGTTGCTTACTTTTAATGTATATTAGTGGTGAAATATTTTTACCTAAACTACTGAAGCATCATAAACAAACTATAGAAAATTATACAAGATGAAACCCAAAAAAGCACTTTAGAATCTGAGAATATGAATATGATGATTGACTTTAGGCAGAAGTCGTTGACAGTGCTGTTCCCTCTATGCAGTTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGGGTATGATATCATATTCTGAGGTTTTCTATTGAATATTAACCAGCAGCAGTATAAATAATCGCAAATGAATAAATAGACGAAGAGGATTGACGATTATTTTTTGTAATTCTGAATTTTCTCTAAATTTCTCATAAAGGACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTG</genome_strand>
        <mrna_strand>AAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTGCACTCCCTCCACCGGAATTTTGGTCTCCGGCGGTCGTACGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTGTGAATTCCTCTAATTATGCCCCATTTCATTATAAAGATCTGAAATTTTCCAGAAGCAGCTCTATGGATTTTTCTAGAATGGCAATTGGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGGAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTTCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTNTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGG........................................................................................................................................GACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACGCTACTAGACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441863" ref_strand="+" ref_description="SGN-E441863 [cSTA-31-O14]">
      <seq>aactcttgagcagtatcttcaaaagtttaaataacgaaccccatattgaaaaatgaaagtacactcctgcattcatcctcttccctgcactccctccaccggaattttggtctccggcggtcgtacggaagctaagcttgctgctaacaccagaaagctttattctttaactgtgaattcctctaattatgccccatttcattataaagatctgaaattttccagaagcagctctatggatttttctagaatggcaattggttcgaatgtaagtgaagatacagatgacatgtttgatgatctcctaagaacgcatgggaaagtggtatacaaaagaaatgaccaaaaacctgcaagtgaggagattgatgatgatgctgaaagcctatcctttgcaatggctgtggctaaagttgcaagtgatgtcaaggctggagatataaaggttctctttgtcaagcctctagtatattggactcggtttttcattattgctactgcattctctcgcccacagattgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="26465" stop="29346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26777" g_stop="26993" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="265" r_length="217" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26994" i_stop="27935" i_length="942">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27936" g_stop="28062" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="392" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28063" i_stop="28913" i_length="851">
            <donor d_prob="0.363" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28914" g_stop="29046" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="525" r_length="133" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E441863" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26777" e_stop="26993"/>
          <exon e_start="27936" e_stop="28062"/>
          <exon e_start="28914" e_stop="29046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCGGTATTCCCTAAAACTTCAAGCTTCCGCCCCCCCCCCCCCCCTTTTTTTTTCTTTGTGAAGCTACAGCACTATTTGCAAATTGTTTTGCATTTTGCTGTTGTATTTTGTTGAAAAATTATCCCTTTTGTGGTTCAGAAGGGCATTCTTGTGAATTGAACGCCAATTTCTTATTTGAATTCTACACAAGAACCTGTTAACTAGCCGTCTCAAATTTTATTTTTCTAGTTGCAAAGTATGTTTTGTTGGATTTTCCAGCTAACTCAAATTATAATCTTGTCTTTGCTAATAGAAAGAGGAAGAGTTAACTGCATTTCACTCTTAATACAACTTTACTGCTCCTTCTGAAGACATTGATTAAGAAAATCTGTAGTCTTTGCCTTTATGTTTGGCTGTTGGATTAGTTGTATTAGATATGATAAGGTCTCTGTAAAAGTGAGTGAACTTGGAAAAAGAGATAGTTTATGCTCAAGAAAGTGAATTGTGACATCTTAAGGTTTTTGTATATGTCCAAACTATCTATCTCTCTCTAAAATGTCTCACTTAATGAACACTCCACTAATTGGAGAAACAAGGGTGAATTTTTGGGAGAAAAAGCAATAAATGCTTATTGTTTTTCTAGAACATCCAATATTTTAGAACAAATCCTTTGCCAAAAATGGCAAATATGAACCGGCAGTAGTACTATGTACTTCCCAGAAAAGAGTTTTTTTTCAAGGTGAACAACTACCATAAACTAGCCGACCTCAAGTTGTTTGGATTGAGATATAGTTGTCTGTTTGAACAACTACCTAAACACTGAATATAGTCTTTAGTAGTCTTAGTTCAAAGTCTATTCTTGAGGCTCGTTACGTGTGATTTCTTCTGGTTAGTCTGTGATTCATTATGAATGAATGATAATCTTTCTGCTTGATGCTGCACTTAACATGAATACCTTTGGTACAGAATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGTGTAAGTTGTTCTAAATTGTTAGTTGGATTGACTACTTCTCAGTTGCCGAAGCTTTGAGCCTCGTAGCTTATAGTTTTACTTTTCATGTTGGCCTGTACCTCTTAGCTCATAGTTTTATCTTAGGAACATCGGTTAGTTTTATGATATCCAAGAACGTGTTGACCAACTTTAATTTCATAACTCATGAGCATCTATGTTCTTGTTTTTGTTATTTTCCTTTGGGGAAAAAAGAGTATTTTCCCCTATGATTGATGTACTTACATTATACCTCTATGTAGTGAAAAAATAAGCTGAGAACCCTTTTAGCTTAAAAACCATCCATTTTACTCTCTTAATCAATTCCATACATGTCTCATTTTGTTGTTCCTTCAAAAATCTCATTGAAAATGTCATGAATATCCTCCATTCTTATGTGTAGGAACTCTTTGCATTAAAATGTTCATGTTCTTTCATTGCCCTTCAATCTAGTAGTAGTTCTACCAGAAGGTTTTTGAGATAATATTATTTGTATCAGAACTCTCTAACATAATTTCAAGTTTTTTTACATTGATATAGTTGTTAGTTATATTATAGAATTTAAGGTAGTATAGCCCAAATGTAATCGTAATTTGATTCGCATCATTTTGCTTAATATACTTTTGAGTTGTTTAGGTGACATTTACTGATAATGTTGCTTACTTTTAATGTATATTAGTGGTGAAATATTTTTACCTAAACTACTGAAGCATCATAAACAAACTATAGAAAATTATACAAGATGAAACCCAAAAAAGCACTTTAGAATCTGAGAATATGAATATGATGATTGACTTTAGGCAGAAGTCGTTGACAGTGCTGTTCCCTCTATGCAGTTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGC</genome_strand>
        <mrna_strand>AAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTGCACTCCCTCCACCGGAATTTTGGTCTCCGGCGGTCGTACGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTGTGAATTCCTCTAATTATGCCCCATTTCATTATAAAGATCTGAAATTTTCCAGAAGCAGCTCTATGGATTTTTCTAGAATGGCAATTGGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGGAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTTCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447585" ref_strand="+" ref_description="SGN-E447585 [cSTA-27-D5]">
      <seq>aactcttgagcagtatcttcaaaagtttaaataacgaaccccatattgaaaaatgaaagtacactcctgcattcatcctcttccctgcactccctccaccggaattttggtctccggcggtcgtacggaagctaagcttgctgctaacaccagaaagctttattctttaactgtgaattcctctaattatgccccatttcattataaagatctgaaattttccagaagcagctctatggatttttctagaatggcaattggttcgaatgtaagtgaagatacagatgacatgtttgatgatctcctaagaacgcatgggaaagtggtatacaaaagaaatgaccaaaaacctgcaagtgaggagattgatgatgatgctgaaagcctatcctttgcaatggctgtggctaaagttgcaagtgatgtcaaggctggagatataaaggttctctttgtcaagcctctagtatattggactcggtttttcattattgctactgcattctctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="26465" stop="29331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26777" g_stop="26993" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="265" r_length="217" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26994" i_stop="27935" i_length="942">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27936" g_stop="28062" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="392" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28063" i_stop="28913" i_length="851">
            <donor d_prob="0.363" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28914" g_stop="29031" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="510" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E447585" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26777" e_stop="26993"/>
          <exon e_start="27936" e_stop="28062"/>
          <exon e_start="28914" e_stop="29031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCGGTATTCCCTAAAACTTCAAGCTTCCGCCCCCCCCCCCCCCCTTTTTTTTTCTTTGTGAAGCTACAGCACTATTTGCAAATTGTTTTGCATTTTGCTGTTGTATTTTGTTGAAAAATTATCCCTTTTGTGGTTCAGAAGGGCATTCTTGTGAATTGAACGCCAATTTCTTATTTGAATTCTACACAAGAACCTGTTAACTAGCCGTCTCAAATTTTATTTTTCTAGTTGCAAAGTATGTTTTGTTGGATTTTCCAGCTAACTCAAATTATAATCTTGTCTTTGCTAATAGAAAGAGGAAGAGTTAACTGCATTTCACTCTTAATACAACTTTACTGCTCCTTCTGAAGACATTGATTAAGAAAATCTGTAGTCTTTGCCTTTATGTTTGGCTGTTGGATTAGTTGTATTAGATATGATAAGGTCTCTGTAAAAGTGAGTGAACTTGGAAAAAGAGATAGTTTATGCTCAAGAAAGTGAATTGTGACATCTTAAGGTTTTTGTATATGTCCAAACTATCTATCTCTCTCTAAAATGTCTCACTTAATGAACACTCCACTAATTGGAGAAACAAGGGTGAATTTTTGGGAGAAAAAGCAATAAATGCTTATTGTTTTTCTAGAACATCCAATATTTTAGAACAAATCCTTTGCCAAAAATGGCAAATATGAACCGGCAGTAGTACTATGTACTTCCCAGAAAAGAGTTTTTTTTCAAGGTGAACAACTACCATAAACTAGCCGACCTCAAGTTGTTTGGATTGAGATATAGTTGTCTGTTTGAACAACTACCTAAACACTGAATATAGTCTTTAGTAGTCTTAGTTCAAAGTCTATTCTTGAGGCTCGTTACGTGTGATTTCTTCTGGTTAGTCTGTGATTCATTATGAATGAATGATAATCTTTCTGCTTGATGCTGCACTTAACATGAATACCTTTGGTACAGAATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGTGTAAGTTGTTCTAAATTGTTAGTTGGATTGACTACTTCTCAGTTGCCGAAGCTTTGAGCCTCGTAGCTTATAGTTTTACTTTTCATGTTGGCCTGTACCTCTTAGCTCATAGTTTTATCTTAGGAACATCGGTTAGTTTTATGATATCCAAGAACGTGTTGACCAACTTTAATTTCATAACTCATGAGCATCTATGTTCTTGTTTTTGTTATTTTCCTTTGGGGAAAAAAGAGTATTTTCCCCTATGATTGATGTACTTACATTATACCTCTATGTAGTGAAAAAATAAGCTGAGAACCCTTTTAGCTTAAAAACCATCCATTTTACTCTCTTAATCAATTCCATACATGTCTCATTTTGTTGTTCCTTCAAAAATCTCATTGAAAATGTCATGAATATCCTCCATTCTTATGTGTAGGAACTCTTTGCATTAAAATGTTCATGTTCTTTCATTGCCCTTCAATCTAGTAGTAGTTCTACCAGAAGGTTTTTGAGATAATATTATTTGTATCAGAACTCTCTAACATAATTTCAAGTTTTTTTACATTGATATAGTTGTTAGTTATATTATAGAATTTAAGGTAGTATAGCCCAAATGTAATCGTAATTTGATTCGCATCATTTTGCTTAATATACTTTTGAGTTGTTTAGGTGACATTTACTGATAATGTTGCTTACTTTTAATGTATATTAGTGGTGAAATATTTTTACCTAAACTACTGAAGCATCATAAACAAACTATAGAAAATTATACAAGATGAAACCCAAAAAAGCACTTTAGAATCTGAGAATATGAATATGATGATTGACTTTAGGCAGAAGTCGTTGACAGTGCTGTTCCCTCTATGCAGTTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCG</genome_strand>
        <mrna_strand>AAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTGCACTCCCTCCACCGGAATTTTGGTCTCCGGCGGTCGTACGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTGTGAATTCCTCTAATTATGCCCCATTTCATTATAAAGATCTGAAATTTTCCAGAAGCAGCTCTATGGATTTTTCTAGAATGGCAATTGGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGGAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTTCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732417" ref_strand="+" ref_description="SGN-E732417 [LB02AE02]">
      <seq>acattatgtcccatttccttataaagatcagaaattttccagaagcagctctacggatttttctagaacggctatcggttcgaatgtaagtgaagatacagatgacatgtttgatgatctcctaagaacgcatggcaaagtggtatacaaaagaaatgaccaaaaacctgcaagtgaggagattgatgatgatgctgaaagcctatcgtttgcaatggctgtggctaaagttgcaagtgatgtcaaggctggagatataaaggtcctctttgtcaagcctctagtatattggactcggtttttcattattgctactgcattctctcgcccacagattgatgccattgggaccagagtaagagatatggctgaggaacaatatggaagagttgcttctggagattcaaaacccaactcgtggacactactggactttggtgatgtcgttgttcatctatttcttcctccgcagcgtgagtactacaacctggaagaattctatggcaatgcagcatccatcgaactaccatttgagaaccaacaacaattgcgaggacctactggttattgaagtcccaacagttatggcctcgtggtgattaacagaaagtgtagcaaattatgaggcaatcacagtgttcccccgattgctgacaaggaacgattaacatatctgggcaaactctgttgatccactggttgcgttatttttcttaaattagtagtaagataaagctctctactaagttgtctctgtagaagtattggttaagaaatagtttacaagcattctgaactaataaaggctcattgtcacgtttgatgaaagaacctaacatcctgcttctttttccttgatgtgagttgagtttaaatgaagaatgaggatttaaataaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="26614" stop="30714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26912" g_stop="26993" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26994" i_stop="27935" i_length="942">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27936" g_stop="28062" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="209" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28063" i_stop="28913" i_length="851">
            <donor d_prob="0.363" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28914" g_stop="29052" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="348" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29053" i_stop="29188" i_length="136">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29189" g_stop="29277" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="437" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29278" i_stop="29954" i_length="677">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29955" g_stop="30413" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="895" r_length="458" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="896" polyA_stop="911"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E732417" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26912" e_stop="26993"/>
          <exon e_start="27936" e_stop="28062"/>
          <exon e_start="28914" e_stop="29052"/>
          <exon e_start="29189" e_stop="29277"/>
          <exon e_start="29955" e_stop="30413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCGGTATTCCCTAAAACTTCAAGCTTCCGCCCCCCCCCCCCCCCTTTTTTTTTCTTTGTGAAGCTACAGCACTATTTGCAAATTGTTTTGCATTTTGCTGTTGTATTTTGTTGAAAAATTATCCCTTTTGTGGTTCAGAAGGGCATTCTTGTGAATTGAACGCCAATTTCTTATTTGAATTCTACACAAGAACCTGTTAACTAGCCGTCTCAAATTTTATTTTTCTAGTTGCAAAGTATGTTTTGTTGGATTTTCCAGCTAACTCAAATTATAATCTTGTCTTTGCTAATAGAAAGAGGAAGAGTTAACTGCATTTCACTCTTAATACAACTTTACTGCTCCTTCTGAAGACATTGATTAAGAAAATCTGTAGTCTTTGCCTTTATGTTTGGCTGTTGGATTAGTTGTATTAGATATGATAAGGTCTCTGTAAAAGTGAGTGAACTTGGAAAAAGAGATAGTTTATGCTCAAGAAAGTGAATTGTGACATCTTAAGGTTTTTGTATATGTCCAAACTATCTATCTCTCTCTAAAATGTCTCACTTAATGAACACTCCACTAATTGGAGAAACAAGGGTGAATTTTTGGGAGAAAAAGCAATAAATGCTTATTGTTTTTCTAGAACATCCAATATTTTAGAACAAATCCTTTGCCAAAAATGGCAAATATGAACCGGCAGTAGTACTATGTACTTCCCAGAAAAGAGTTTTTTTTCAAGGTGAACAACTACCATAAACTAGCCGACCTCAAGTTGTTTGGATTGAGATATAGTTGTCTGTTTGAACAACTACCTAAACACTGAATATAGTCTTTAGTAGTCTTAGTTCAAAGTCTATTCTTGAGGCTCGTTACGTGTGATTTCTTCTGGTTAGTCTGTGATTCATTATGAATGAATGATAATCTTTCTGCTTGATGCTGCACTTAACATGAATACCTTTGGTACAGAATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGTGTAAGTTGTTCTAAATTGTTAGTTGGATTGACTACTTCTCAGTTGCCGAAGCTTTGAGCCTCGTAGCTTATAGTTTTACTTTTCATGTTGGCCTGTACCTCTTAGCTCATAGTTTTATCTTAGGAACATCGGTTAGTTTTATGATATCCAAGAACGTGTTGACCAACTTTAATTTCATAACTCATGAGCATCTATGTTCTTGTTTTTGTTATTTTCCTTTGGGGAAAAAAGAGTATTTTCCCCTATGATTGATGTACTTACATTATACCTCTATGTAGTGAAAAAATAAGCTGAGAACCCTTTTAGCTTAAAAACCATCCATTTTACTCTCTTAATCAATTCCATACATGTCTCATTTTGTTGTTCCTTCAAAAATCTCATTGAAAATGTCATGAATATCCTCCATTCTTATGTGTAGGAACTCTTTGCATTAAAATGTTCATGTTCTTTCATTGCCCTTCAATCTAGTAGTAGTTCTACCAGAAGGTTTTTGAGATAATATTATTTGTATCAGAACTCTCTAACATAATTTCAAGTTTTTTTACATTGATATAGTTGTTAGTTATATTATAGAATTTAAGGTAGTATAGCCCAAATGTAATCGTAATTTGATTCGCATCATTTTGCTTAATATACTTTTGAGTTGTTTAGGTGACATTTACTGATAATGTTGCTTACTTTTAATGTATATTAGTGGTGAAATATTTTTACCTAAACTACTGAAGCATCATAAACAAACTATAGAAAATTATACAAGATGAAACCCAAAAAAGCACTTTAGAATCTGAGAATATGAATATGATGATTGACTTTAGGCAGAAGTCGTTGACAGTGCTGTTCCCTCTATGCAGTTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGGGTATGATATCATATTCTGAGGTTTTCTATTGAATATTAACCAGCAGCAGTATAAATAATCGCAAATGAATAAATAGACGAAGAGGATTGACGATTATTTTTTGTAATTCTGAATTTTCTCTAAATTTCTCATAAAGGACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTGGTAAGTAATTCATGGTACTTTAATAGTCCTGCTATTACTTGTGTCATGGCTGAAGAATTTCACTGGATATGAATTTATTATTGCCCTTGTTCTTGATTCACCCCTATTTTTTAATTTCATATGTGGACAAGTGCTGTTAAGGGGCAATATCCTTCTGCACATTAGGATTAGAAGGGAGTAACTTTGTTGTTGACTAACGACTACTTACTGTAACTGTGTTGCTTCACATTGTCCAACATAACTTACCCAAACATAGTGCTTAACTGTTACAAGTTATCAAACCATCAAGCAACTTGCAAAAATCCGTTATTATTCAGTTGAGCAAGAAAAGGAGGTTTAAAGGTTCAAAGCACAGAGATCTCTGACCCAGCCAGAGAAGCATTAGTTTATATCGTGCCCTGCTTCATATGGGTAGTGCTTTTCAAAAATCATCCCATGCATAAGGTTAACATCTGGTTTCAACATGGACTAGCTATCCCAGGGTGGCCAAACATGTTATGGCCAGGGTCAGAAGAAATGTTACCTCCAAAGCTATAAGGACTAAACATGAGTGGTTTGTTTTGATAAGGCGATGCTATATTATGTGCTACTATTTGACCCTTGCAGCAACCATGTACTATGCCATGAAATGTTGTTCTTCTTGCTGATATGTCGCTCCATGCCTCTCTTAATTACAGGTGATGTCGTTGTTCATCTATTTCTTCCTCCGCAGCGTGAGTACTACAACCTGGAAGAATTCTATGGCAATGCAGCATCCATCGAACTACCATTTGAGAACCAACAACAATTGCGAGGACCTACTGGTTATTGAAGTCCCAACAGTTATGGCCTCGTGGTGATTAACAGAAAGTGTAGCAAATTATGAGGCAATCACAGTGTTCCCCCGATTGCTGACAAGGAACGATTAACATATCTGGGCAAACTCTGTTGATCCACTGGTTGCGTTATTTTTCTTAAATTAGTAGTAAGATAAAGCTCTCTACTAAGTTGTCTCTGTAGAAGTATTGGTTAAGAAATAGTTTACAAGCATTCTGAACTAATAAGGGCTCATTGTCACGTTTGATGAAAGAACCTAACATCCTGCTTCTTTTTCCCTTGATGTGAGTTGAGTTTAAATGAAGAATGAGGATTTAAAT</genome_strand>
        <mrna_strand>ACATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGG........................................................................................................................................GACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTCGTTGTTCATCTATTTCTTCCTCCGCAGCGTGAGTACTACAACCTGGAAGAATTCTATGGCAATGCAGCATCCATCGAACTACCATTTGAGAACCAACAACAATTGCGAGGACCTACTGGTTATTGAAGTCCCAACAGTTATGGCCTCGTGGTGATTAACAGAAAGTGTAGCAAATTATGAGGCAATCACAGTGTTCCCCCGATTGCTGACAAGGAACGATTAACATATCTGGGCAAACTCTGTTGATCCACTGGTTGCGTTATTTTTCTTAAATTAGTAGTAAGATAAAGCTCTCTACTAAGTTGTCTCTGTAGAAGTATTGGTTAAGAAATAGTTTACAAGCATTCTGAACTAATAAAGGCTCATTGTCACGTTTGATGAAAGAACCTAACATCCTGCTTCTTTTT-CCTTGATGTGAGTTGAGTTTAAATGAAGAATGAGGATTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395416" ref_strand="+" ref_description="SGN-E395416 [TUS-16-G22](-)">
      <seq>cctacattcaactttccaacagtccaagatggatttatgaagcccatgatgaggagaaggaagagtaactcaagatctaaacctcttccaccttcaaagaggttgagattggaggcacaaagagttctcaaagagagagttcaagacatagctgataaaaagggcattaagctgaggttctgcaccttaaaggattgtgaaagtcacatccagtcacttgatagcccatgtacgaacataagaatggaaattggatggccaccgggagttccatttgttcacccacatgatctcccaaataaggctaagattggatttcttgaaacatatgaacctggttggtctgcaactcatgatatggagttgagcctaatcgatcccggacagccaagtcaacacacttctaactgaatctatgttgctatcagaatgctgcctgatgagtgcttggattcattataccaatatttgtctgcttagttatgctcgtctcatgcagatcttgctaatttgtatatgaacttcaattaagatatgaatgcacaatgaactgttcctttgtttatcgtaatcgttgtccctgtacatattagtttgtaaaatttgatggaatattagttgtaaattccgaatgtactcctagttttctcggctctcatatcttagctcttgtggagcattaaatgttggccaaagagtttgaatttatatagtggttggataaaagaagctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="33097" stop="30335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32797" g_stop="32767" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32766" i_stop="31612" i_length="1155">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.860" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31611" g_stop="31234" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="409" r_length="378" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31233" i_stop="30948" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30947" g_stop="30614" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="743" r_length="334" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E395416" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32797" e_stop="32767"/>
          <exon e_start="31611" e_stop="31234"/>
          <exon e_start="30947" e_stop="30614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACATTCAACTTTCCAACAGTCCAAGATGGTATGACATCCTTTTTTTCTTTTTTCCTATTTGCATTATCAGTATGGAAATGAAAATCTAGAATTATTACGTTTTTGTTTCTATTCTCTTTTTTATATTTAAATGAATTAGTAGACACAATAAGGATAAGGTGACTTAGAATTGGCTTTCATGGATGGTGCTCCCTAATGTTTTCAGTTGGAGGGCCAGTTGACAACTTGATTAGGAAAGTAGGTTGTTCATAATCTTGAAACTTTTGTGGTTTTTTGAAAAATGTGAGTCTAAAGTAGCATCTAGTTAGAGTTATCATGATTATGAGTCCACACAACTAATACCTCCGAACAGATTTTATTTTTTTAGGATGGCAATGTATACATACATATTAAGCACAAAGATTGTGCTGGAAACCAAAACACGGGTGTTACTTCAGAGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATGAGTTCAAAAGGTTTCAGATTCTGTAAGTTTCTTTCTGTATCAATGTGAAGGAGGTATCTAGAAGCCGAATTACTTGCAGTTTCAAGTAATGGAACTAAAGAAGGATGCCTTTTTATTTTTACATTTTCTTGTGTTAAATGCTCTCCCATGTTTTTTCGTAATATTGATAGTTTGGTGTTTTTTACTTTTCCTTAAGCAATATATTACTGGCTGGATTTTTTTAACATTGAATTGAGCTCTTTTCTGCTAGTATTCCTTAGTAAGAAGCTTTTAACAACAGGTCCTTGGATCGATGAAATGCTGGTACAGGATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATTAAGCTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATAGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGTTCACCCACATGATCTCCCAAATAAGGCTAAGATTGGATTTCTTGAAACATATGAACCTGGTTGGTCTGCAACTCATGATATGGAGTTGAGCCTAATCGATCCCGGACAGCCAAGTCAACACACTTCTAACTGTAACTATCATTCCCCTAATTATCCTTGTTTTTCTGCATCCGTATCTTTATTTAAGCAGTAGATGTTTCTGGTTTCTTTAGTTGCATATGCATGAGAGATGGCGTATAAGTTCACATCTTTCCTATCTTCTGCATTGGCCATGTTGCTAGTAACAACATTAATCCATTTGAAGAAGCATTTCTGTTCATCTACTCATGCATTCTAGAAGTTTACACCCTCCCTCCCTGTTCTTTTACTTTTACTTTTGGCTCTTGTATATACTGAAAGCAAAAATGTGTTCTGCAGGAATCTATGTTGCTATCAGAATGCTGCCTGATGAGTGCTTGGATTCATTATACCAATATTTGTCTGCTTAGTTATGCTCGTCTCATGCAGATCTTGCTAATTTGTATATGAACTTCAATTAAGATATGAATGCACAATGAACTGTTCCTTTGTTTATCGTAATCGTTGTCCCTGTACATATTAGTTTGTAAAATTTGATGGAATATTAGTTGTAAATTCCGAATGTACTCCTAGTTTTCTCGGCTCTCATATCTTAGCTCTTGTGGAGCATTTTATGTTGGCCAAAGAGTTTGAATTTATATAGTGGTTGGATCTTAGAAGCTAACTTAACTTC</genome_strand>
        <mrna_strand>CCTACATTCAACTTTCCAACAGTCCAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATTAAGCTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATAGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGTTCACCCACATGATCTCCCAAATAAGGCTAAGATTGGATTTCTTGAAACATATGAACCTGGTTGGTCTGCAACTCATGATATGGAGTTGAGCCTAATCGATCCCGGACAGCCAAGTCAACACACTTCTAACT..............................................................................................................................................................................................................................................................................................GAATCTATGTTGCTATCAGAATGCTGCCTGATGAGTGCTTGGATTCATTATACCAATATTTGTCTGCTTAGTTATGCTCGTCTCATGCAGATCTTGCTAATTTGTATATGAACTTCAATTAAGATATGAATGCACAATGAACTGTTCCTTTGTTTATCGTAATCGTTGTCCCTGTACATATTAGTTTGTAAAATTTGATGGAATATTAGTTGTAAATTCCGAATGTACTCCTAGTTTTCTCGGCTCTCATATCTTAGCTCTTGTGGAGCATTAAATGTTGGCCAAAGAGTTTGAATTTATATAGTGGTTGGATAAAAGAAGCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433577" ref_strand="-" ref_description="SGN-E433577 [STM-58-N23]">
      <seq>accagttgatgacttcatgcagagatcaactgatcagttgcttatcaggagcaatttccntacattcaactttccaacagtccaagatggtccttggatcgatgaaatgctggtacaggatctatgaagcccatgatgaggaggaggaagagtaactcaagatctaaacctcttccaccttcaaagaggttgagattggaggcacaaagagttctcaaagagagagttcaagacatagctgataaaaagggcatcaaactgaggttctgcaccttaaaggattgtgaaagtcacatccagtcacttgattgcccatgtacgaacataagaatggaaattggatggccaccgggagttccatttgttcacccacatgatctcccaaataaggctaagattggatttcttgaaacatatgaacctggttggtctgcaactcatgatatggagttgagcctaatcgatcccggacagccaagtcaacacacttctaactgaatctatatcgctatcagaatgctgcctgaagagtgcttggattcattataccaatatttggctgcttaattatgcttgtctcatgcagatcttgctaatttgtatacgaatttcaattaagatatgaatgcacaatgagcttttcctttgtttatcctaatcgttgtccctgtacatattagtttgtaaaatttgatggaatattagttctaaattccgagtgaactcgtagttttctcggcaattttgttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="33155" stop="30396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32855" g_stop="32767" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32766" i_stop="31641" i_length="1126">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31640" g_stop="31234" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="496" r_length="407" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31233" i_stop="30948" i_length="286">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30947" g_stop="30692" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="752" r_length="256" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E433577" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433577" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32855" e_stop="32767"/>
          <exon e_start="31640" e_stop="31234"/>
          <exon e_start="30947" e_stop="30692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTAACAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATGGTATGACATCCTTTTTTTCTTTTTTCCTATTTGCATTATCAGTATGGAAATGAAAATCTAGAATTATTACGTTTTTGTTTCTATTCTCTTTTTTATATTTAAATGAATTAGTAGACACAATAAGGATAAGGTGACTTAGAATTGGCTTTCATGGATGGTGCTCCCTAATGTTTTCAGTTGGAGGGCCAGTTGACAACTTGATTAGGAAAGTAGGTTGTTCATAATCTTGAAACTTTTGTGGTTTTTTGAAAAATGTGAGTCTAAAGTAGCATCTAGTTAGAGTTATCATGATTATGAGTCCACACAACTAATACCTCCGAACAGATTTTATTTTTTTAGGATGGCAATGTATACATACATATTAAGCACAAAGATTGTGCTGGAAACCAAAACACGGGTGTTACTTCAGAGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATGAGTTCAAAAGGTTTCAGATTCTGTAAGTTTCTTTCTGTATCAATGTGAAGGAGGTATCTAGAAGCCGAATTACTTGCAGTTTCAAGTAATGGAACTAAAGAAGGATGCCTTTTTATTTTTACATTTTCTTGTGTTAAATGCTCTCCCATGTTTTTTCGTAATATTGATAGTTTGGTGTTTTTTACTTTTCCTTAAGCAATATATTACTGGCTGGATTTTTTTAACATTGAATTGAGCTCTTTTCTGCTAGTATTCCTTAGTAAGAAGCTTTTAACAACAGGTCCTTGGATCGATGAAATGCTGGTACAGGATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATTAAGCTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATAGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGTTCACCCACATGATCTCCCAAATAAGGCTAAGATTGGATTTCTTGAAACATATGAACCTGGTTGGTCTGCAACTCATGATATGGAGTTGAGCCTAATCGATCCCGGACAGCCAAGTCAACACACTTCTAACTGTAACTATCATTCCCCTAATTATCCTTGTTTTTCTGCATCCGTATCTTTATTTAAGCAGTAGATGTTTCTGGTTTCTTTAGTTGCATATGCATGAGAGATGGCGTATAAGTTCACATCTTTCCTATCTTCTGCATTGGCCATGTTGCTAGTAACAACATTAATCCATTTGAAGAAGCATTTCTGTTCATCTACTCATGCATTCTAGAAGTTTACACCCTCCCTCCCTGTTCTTTTACTTTTACTTTTGGCTCTTGTATATACTGAAAGCAAAAATGTGTTCTGCAGGAATCTATGTTGCTATCAGAATGCTGCCTGATGAGTGCTTGGATTCATTATACCAATATTTGTCTGCTTAGTTATGCTCGTCTCATGCAGATCTTGCTAATTTGTATATGAACTTCAATTAAGATATGAATGCACAATGAACTGTTCCTTTGTTTATCGTAATCGTTGTCCCTGTACATATTAGTTTGTAAAATTTGATGGAATATTAGTTGTAAATTCCGAATGTACTCCTAGTTTTCTCGGCTCTCATATCTTA</genome_strand>
        <mrna_strand>ACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTATCAGGAGCAATTTCCNTACATTCAACTTTCCAACAGTCCAAGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTGGATCGATGAAATGCTGGTACAGGATCTATGAAGCCCATGATGAGGAGGAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATCAAACTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATTGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGTTCACCCACATGATCTCCCAAATAAGGCTAAGATTGGATTTCTTGAAACATATGAACCTGGTTGGTCTGCAACTCATGATATGGAGTTGAGCCTAATCGATCCCGGACAGCCAAGTCAACACACTTCTAACT..............................................................................................................................................................................................................................................................................................GAATCTATATCGCTATCAGAATGCTGCCTGAAGAGTGCTTGGATTCATTATACCAATATTTGGCTGCTTAATTATGCTTGTCTCATGCAGATCTTGCTAATTTGTATACGAATTTCAATTAAGATATGAATGCACAATGAGCTTTTCCTTTGTTTATCCTAATCGTTGTCCCTGTACATATTAGTTTGTAAAATTTGATGGAATATTAGTTCTAAATTCCGAGTGAACTCGTAGTTTTCTCGGCAATTTTGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433576" ref_strand="+" ref_description="SGN-E433576 [STM-58-N23]">
      <seq>cacggtcactgggttcttgtggatggtgatcttggcccccaggaagcaatagtttatcctggccttgcattatatcaggcaactgcgggctatatcagccctgcacttcatcggacagacattggtaatcagcagggtagcatgtatggacgctgttccctttcttttaaacttatgcccaagtccatgaccaacctcaattgttcagagatgcgggctgctggtcacggggttgaagctcaattccagcttcccgtaccagttgatgacttcatgcagagatcaactgatcagttgcttatcaggagcaatttccctacattcaactttccaacagtccaagatggtccttggatcgatgaaatgctggtacaggatctatgaagcccatgatgaggaggaggaagagtaactcaagatctaaacctcttccaccttcaaagaggttgagattggaggcacaaagagttctcaaagagagagttcaagacatagctgataaaaagggcatcaaactgaggttctgcaccttaaaggattgtgaaagtcacatccagtcacttgattgcccatgtacgaacataagaatggaaattggatggccaccgggagttccatttgntcacccacatgatctcccaaataggctaagaatggatttcttgaaacatatgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="33412" stop="31008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33112" g_stop="32767" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32766" i_stop="31641" i_length="1126">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31640" g_stop="31308" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="678" r_length="332" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E433576" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33112" e_stop="32767"/>
          <exon e_start="31640" e_stop="31308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAAGAAGCAATTGTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATATATGGACGCTGTTCTCTCTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAAATGCGGGCTGCTGGTCATGGGGTTGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTAACAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATGGTATGACATCCTTTTTTTCTTTTTTCCTATTTGCATTATCAGTATGGAAATGAAAATCTAGAATTATTACGTTTTTGTTTCTATTCTCTTTTTTATATTTAAATGAATTAGTAGACACAATAAGGATAAGGTGACTTAGAATTGGCTTTCATGGATGGTGCTCCCTAATGTTTTCAGTTGGAGGGCCAGTTGACAACTTGATTAGGAAAGTAGGTTGTTCATAATCTTGAAACTTTTGTGGTTTTTTGAAAAATGTGAGTCTAAAGTAGCATCTAGTTAGAGTTATCATGATTATGAGTCCACACAACTAATACCTCCGAACAGATTTTATTTTTTTAGGATGGCAATGTATACATACATATTAAGCACAAAGATTGTGCTGGAAACCAAAACACGGGTGTTACTTCAGAGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATGAGTTCAAAAGGTTTCAGATTCTGTAAGTTTCTTTCTGTATCAATGTGAAGGAGGTATCTAGAAGCCGAATTACTTGCAGTTTCAAGTAATGGAACTAAAGAAGGATGCCTTTTTATTTTTACATTTTCTTGTGTTAAATGCTCTCCCATGTTTTTTCGTAATATTGATAGTTTGGTGTTTTTTACTTTTCCTTAAGCAATATATTACTGGCTGGATTTTTTTAACATTGAATTGAGCTCTTTTCTGCTAGTATTCCTTAGTAAGAAGCTTTTAACAACAGGTCCTTGGATCGATGAAATGCTGGTACAGGATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATTAAGCTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATAGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGTTCACCCACATGATCTCCCAAATAAGGCTAAGATTGGATTTCTTGAAACATATGAACC</genome_strand>
        <mrna_strand>CACGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAGGAAGCAATAGTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATGTATGGACGCTGTTCCCTTTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAGATGCGGGCTGCTGGTCACGGGGTTGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTATCAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTGGATCGATGAAATGCTGGTACAGGATCTATGAAGCCCATGATGAGGAGGAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATCAAACTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATTGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGNTCACCCACATGATCTCCCAAAT-AGGCTAAGAATGGATTTCTTGAAACATATGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403671" ref_strand="+" ref_description="SGN-E403671 [PPC-11-I24]">
      <seq>ttctcacggtcactgggttcttgtggatggtgatcttggcccccaggaagcaatattttatcctggccttgcattatatcaggcaactgcgggctatatcagccctgcacttcatcggacagacattggtaatcagcagggtagcatgtatggacgctgttccctttcttttaaacttatgcccaagtccatgaccaacctcaattgttcagagatgcgggctgctggtcacggggatgaagctcaattccagcttcccgtaccagttgatgacttcatgcagagatcaactgatcagttgcttatcaggagcaatttccctacattcaactttccaacagtccaagatggtccttggaacgatgaactgctggtacaggatctatgaagcccatgatgaagaggaggaagagtaactcaagatctaaacctcttccaccttcaaagaggttgagattggaggcacaaagagttctcaaagagagagttcaagacatagctgataaaaagggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="33416" stop="31177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33116" g_stop="32767" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32766" i_stop="31641" i_length="1126">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31640" g_stop="31477" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="514" r_length="164" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E403671" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33116" e_stop="32767"/>
          <exon e_start="31640" e_stop="31477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAAGAAGCAATTGTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATATATGGACGCTGTTCTCTCTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAAATGCGGGCTGCTGGTCATGGGGTTGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTAACAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATGGTATGACATCCTTTTTTTCTTTTTTCCTATTTGCATTATCAGTATGGAAATGAAAATCTAGAATTATTACGTTTTTGTTTCTATTCTCTTTTTTATATTTAAATGAATTAGTAGACACAATAAGGATAAGGTGACTTAGAATTGGCTTTCATGGATGGTGCTCCCTAATGTTTTCAGTTGGAGGGCCAGTTGACAACTTGATTAGGAAAGTAGGTTGTTCATAATCTTGAAACTTTTGTGGTTTTTTGAAAAATGTGAGTCTAAAGTAGCATCTAGTTAGAGTTATCATGATTATGAGTCCACACAACTAATACCTCCGAACAGATTTTATTTTTTTAGGATGGCAATGTATACATACATATTAAGCACAAAGATTGTGCTGGAAACCAAAACACGGGTGTTACTTCAGAGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATGAGTTCAAAAGGTTTCAGATTCTGTAAGTTTCTTTCTGTATCAATGTGAAGGAGGTATCTAGAAGCCGAATTACTTGCAGTTTCAAGTAATGGAACTAAAGAAGGATGCCTTTTTATTTTTACATTTTCTTGTGTTAAATGCTCTCCCATGTTTTTTCGTAATATTGATAGTTTGGTGTTTTTTACTTTTCCTTAAGCAATATATTACTGGCTGGATTTTTTTAACATTGAATTGAGCTCTTTTCTGCTAGTATTCCTTAGTAAGAAGCTTTTAACAACAGGTCCTTGGATCGATGAAATGCTGGTACAGGATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCA</genome_strand>
        <mrna_strand>TTCTCACGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAGGAAGCAATATTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATGTATGGACGCTGTTCCCTTTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAGATGCGGGCTGCTGGTCACGGGGATGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTATCAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTGGAACGATGAACTGCTGGTACAGGATCTATGAAGCCCATGATGAAGAGGAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710992" ref_strand="+" ref_description="SGN-E710992 [FA57CE06]">
      <seq>ctgacatattctctttgcttggtagagcagcaagggatatattggacgccatcagcttctatttaaatctgcgtagctctccatttactgaaatacttgataatgttccactcagaaatcgagaaacatcatcctctgtattatccgtctgttgtcattccaggccatcttttcagggtgctcagcaccatggcctgacaactcaagaggatggtcatttggggatgttctcggatcatgagcatcaggttgacagaagccttgttacaattgttaagtcggataggcctggtctacatgtaagagattttcatggtcactgggttcttgtggatggtgatcttggcccccaagaagcaattgtttatcctggccttgcattatatcaggcaactgcgggctatatcagccctgcacttcatcggacagacattggtaatcagcagggtagcatatatggacgctgttctctctcttttaaacttatgcccaagtccatgaccaacctcaattgttcagaaatgcgggctgctggtcatggggttgaagctcaattccagcttcccgtaccagttgatgacttcatgcagagatcaactgatcagttgcttaacaggagcaatttccctacattcaactttccaacagtccaagatggatctatgaagcccatgatgaggagaaggaagagtaacctcaagatctaaacctcttccacctttcaagaggttgagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="33723" stop="31233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33423" g_stop="32767" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32766" i_stop="31612" i_length="1155">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31611" g_stop="31533" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="737" r_length="80" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E710992" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33423" e_stop="32767"/>
          <exon e_start="31611" e_stop="31533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTTTCAGGGTGCTCAGCACCATGGCCTGACAACTCAAGAGGATGGTCATTTGGGGATGTTCTCGGATCATGAGCATCAGGTTGACAGAAGCCTTGTTACAATTGTTAAGTCGGATAGGCCTGGTCTACATGTAAGAGATTTTCATGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAAGAAGCAATTGTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATATATGGACGCTGTTCTCTCTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAAATGCGGGCTGCTGGTCATGGGGTTGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTAACAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATGGTATGACATCCTTTTTTTCTTTTTTCCTATTTGCATTATCAGTATGGAAATGAAAATCTAGAATTATTACGTTTTTGTTTCTATTCTCTTTTTTATATTTAAATGAATTAGTAGACACAATAAGGATAAGGTGACTTAGAATTGGCTTTCATGGATGGTGCTCCCTAATGTTTTCAGTTGGAGGGCCAGTTGACAACTTGATTAGGAAAGTAGGTTGTTCATAATCTTGAAACTTTTGTGGTTTTTTGAAAAATGTGAGTCTAAAGTAGCATCTAGTTAGAGTTATCATGATTATGAGTCCACACAACTAATACCTCCGAACAGATTTTATTTTTTTAGGATGGCAATGTATACATACATATTAAGCACAAAGATTGTGCTGGAAACCAAAACACGGGTGTTACTTCAGAGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATGAGTTCAAAAGGTTTCAGATTCTGTAAGTTTCTTTCTGTATCAATGTGAAGGAGGTATCTAGAAGCCGAATTACTTGCAGTTTCAAGTAATGGAACTAAAGAAGGATGCCTTTTTATTTTTACATTTTCTTGTGTTAAATGCTCTCCCATGTTTTTTCGTAATATTGATAGTTTGGTGTTTTTTACTTTTCCTTAAGCAATATATTACTGGCTGGATTTTTTTAACATTGAATTGAGCTCTTTTCTGCTAGTATTCCTTAGTAAGAAGCTTTTAACAACAGGTCCTTGGATCGATGAAATGCTGGTACAGGATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAA-CTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATT</genome_strand>
        <mrna_strand>CTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTTTCAGGGTGCTCAGCACCATGGCCTGACAACTCAAGAGGATGGTCATTTGGGGATGTTCTCGGATCATGAGCATCAGGTTGACAGAAGCCTTGTTACAATTGTTAAGTCGGATAGGCCTGGTCTACATGTAAGAGATTTTCATGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAAGAAGCAATTGTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATATATGGACGCTGTTCTCTCTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAAATGCGGGCTGCTGGTCATGGGGTTGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTAACAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACCTCAAGATCTAAACCTCTTCCACCTTTCAAGAGGTTGAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316647" ref_strand="+" ref_description="SGN-E316647 [cTOB-7-N19]">
      <seq>agaaaagaacctcaacacagcattccttcttcttcttcttacgaggaatctaagacatcttgacttgtattaggatcatctatgcactaaaaactcaaaagaaggattcaattcatcttaagtttctgtaaggagctgtttgtagcttcaaaatatctttaatttctttccttccaatccgaaaaaagtacttggtgttaattttgaagatttatttagaacaaaaacaaaatgctgactgaagctggtgtctcacgtatgattggtcagaaatatgaaaagttttgtgacaagcttagccgtttttcataattaaaagtgaaaggtcttatttttgcttgttgaggacctgaaggactgttattatctcgaatatctggaaatgactttcaaacatggtcaaagtagataaagcagcctctattggtttaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="32657" stop="31621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32357" g_stop="31921" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E316647" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32357" e_stop="31921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATG</genome_strand>
        <mrna_strand>AGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTATTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334098" ref_strand="+" ref_description="SGN-E334098 [cTOD-21-C9]">
      <seq>tctctcgagattgagacctacatgcttggtgaaaccggttgcagtgcaacgtctgcctatggggtatggtctcgagttaatatatttcagcacaagcagtgcaaaatctagaggatttcatggcaggcaatggcctgccagctctgggtcgtgtgaagctcagtgatttggtaccattggaaggtcttccttctgattcgtataaattatctgtctcaactttgtcacagtcattggctcagtattcagctgccattatacagctatccacaagtgatggagctcttttaaggtctagtctagagtctgcccgactttactttcaacacaaaccctcttatcctgcagcggatgttattcattctgatgattctcaggagtggtgtaagacctctggttaccatgcagatcctcaacaatggcaagaaacatatgatttcaggccagggctcactccttcggaacccaccactgaaattgaattccctcctgctggtttggctgacatattctcttttgcttggtagagcagcaagggatatattggacgccatcagcttctatttaaatctgcgtagctctccatttactgaaatacttgataatggtccactcagaaatcgagaaacatcatcctctgtattatccgtctgttgtcattccaggccatcttttcagggtgctcagcaccatggcctgacaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="34569" stop="32919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34269" g_stop="34209" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34208" i_stop="33865" i_length="344">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33864" g_stop="33219" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="707" r_length="646" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E334098" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34269" e_stop="34209"/>
          <exon e_start="33864" e_stop="33219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATGGTGCGTTAAAAAGCCTCAAATTTTTCATCTTCAACCTCAACATTTTTCCTTATTATGCTCCTAAACTTGTCACATATTTATAGCTAAGTTTTTTTTTTTTTTTAATAGGCGATGCCTAGTAGTTGGGTTTAAGGTTTAGTGATGTTAGTATATTGATTGCTAATAGTGTTATTTGTCTGTTTAATATACAGAAATTAAACTCAAATTATTGAGTATAGAATGAAAAAGTTGGTCCAGTAGGGATATTGATACTGAGGGTTCATATAGTCGACCTCAATTGTGAAAGTTGGTTTTTTTATTTCATTTTAATTTCTGAATTGACTGGTTTTCTATTTGTCATTCAGTGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTC-TTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTTTCAGGGTGCTCAGCACCATGGCCTGACAACTCA</genome_strand>
        <mrna_strand>TCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG........................................................................................................................................................................................................................................................................................................................................................-GGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGGTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTTTCAGGGTGCTCAGCACCATGGCCTGACAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334002" ref_strand="+" ref_description="SGN-E334002 [cTOD-24-K9]">
      <seq>tctctcgagattgagacctacatgcttggtgaaaccggttgcagtgcaacgtctgcctatggggtatggtctcgagttaatatatttcagcacaagcagtgcaaaatctagaggatttcatggcaggcaatggcctgccagctctgggtcgtgtgaagctcagtgatttggtaccattggaaggtcttccttctgattcgtataaattatctgtctcaactttgtcacagtcattggctcagtattcagctgccattatacagctatccacaagtgatggagctcttttaaggtctagtctagagtctgcccgactttactttcaacacaaaccctcttatcctgcagcggatgttattcattctgatgattctcaggagtggtgtaagacctctggttaccatgcagatcctcaacaatggcaagaaacatatgatttcaggccagggctcactccttcggaacccaccactgaaattgaattccctcctgctggtttggctgacatattctctttgcttggtagagcagcaagggatatattggacgccatcagcttctatttaaatctgcgtagctctccatttactgaaatacttgataatgttccactcagaaatcgagaaacatcatcctctgtattatccgtctggtgtcattccaggccatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="34569" stop="32952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34269" g_stop="34209" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34208" i_stop="33865" i_length="344">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33864" g_stop="33252" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="673" r_length="612" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E334002" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34269" e_stop="34209"/>
          <exon e_start="33864" e_stop="33252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATGGTGCGTTAAAAAGCCTCAAATTTTTCATCTTCAACCTCAACATTTTTCCTTATTATGCTCCTAAACTTGTCACATATTTATAGCTAAGTTTTTTTTTTTTTTTAATAGGCGATGCCTAGTAGTTGGGTTTAAGGTTTAGTGATGTTAGTATATTGATTGCTAATAGTGTTATTTGTCTGTTTAATATACAGAAATTAAACTCAAATTATTGAGTATAGAATGAAAAAGTTGGTCCAGTAGGGATATTGATACTGAGGGTTCATATAGTCGACCTCAATTGTGAAAGTTGGTTTTTTTATTTCATTTTAATTTCTGAATTGACTGGTTTTCTATTTGTCATTCAGTGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTT</genome_strand>
        <mrna_strand>TCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG........................................................................................................................................................................................................................................................................................................................................................-GGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGGTGTCATTCCAGGCCATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315748" ref_strand="+" ref_description="SGN-E315748 [cTOA-26-I14]">
      <seq>ttggattcctcctctctcgagattgagacctacatgcttggtgaaaccggttgcagtgcaacgtctgcctatgtgggtatggtctcgagttaatatatttcagcacaagcagtgcaaaatctagaggatttcatggcaggcaatggcctgccagctctgggtcgtgtgaagctcagtgatttggtaccattggaaggtcttccttctgattcgtataaattatctgtctcaactttgtcacagtcattggctcagtattcagctgccattatacagctatccacaagtgatggagctcttttaaggtctagtctagagtctgcccgactttactttcaacacaaaccctcttatcctgcagcggatgttattcattctgatgattctcaggagtggtgtaagacctctggttaccatgcagatcctcaacaatggcaagaaacatatgatttcaggccagggctcactccttcggaacccaccactgaaattgaattccctcctgctggtttggctgacatattctctttgcttggtagagcagcaagggatatattggacgccatcagcttctatttaaatctgcgtagctctccatttactgaaatacttgataatgttccactcagaaatcgagaaacatcatcctctgtattatccgtctgttgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="34581" stop="32966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34281" g_stop="34209" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34208" i_stop="33865" i_length="344">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33864" g_stop="33266" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="672" r_length="599" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E315748" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34281" e_stop="34209"/>
          <exon e_start="33864" e_stop="33266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATGGTGCGTTAAAAAGCCTCAAATTTTTCATCTTCAACCTCAACATTTTTCCTTATTATGCTCCTAAACTTGTCACATATTTATAGCTAAGTTTTTTTTTTTTTTTAATAGGCGATGCCTAGTAGTTGGGTTTAAGGTTTAGTGATGTTAGTATATTGATTGCTAATAGTGTTATTTGTCTGTTTAATATACAGAAATTAAACTCAAATTATTGAGTATAGAATGAAAAAGTTGGTCCAGTAGGGATATTGATACTGAGGGTTCATATAGTCGACCTCAATTGTGAAAGTTGGTTTTTTTATTTCATTTTAATTTCTGAATTGACTGGTTTTCTATTTGTCATTCAGTGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCAT</genome_strand>
        <mrna_strand>TTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG........................................................................................................................................................................................................................................................................................................................................................TGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333903" ref_strand="+" ref_description="SGN-E333903 [cTOD-24-K8]">
      <seq>tctctcgagattgagacctacatgcttggtgaaaccggttgcagtgcaacgtctgcctatggggtatggtctcgagttaatatatttcagcacaagcagtgcaaaatctagaggatttcatggcaggcaatggcctgccagctctgggtcgtgtgaagctcagtgatttggtaccattggaaggtcttccttctgattcgtataaattatctgtctcaactttgtcacagtcattggctcagtattcagctgccattatacagctatccacaagtgatggagctcttttaaggtctagtctagagtctgcccgactttactttcaacacaaaccctcttatcctgcagcggatgttattcattctgatgattctcaggagtggtgtaagacctctggttaccatgcagatcctcaacaatggcaagaaacatatgatttcaggccagggctcactccttcggaacccaccactgaaattgaattccctcctgctggtttggctgacatattctctttgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="34569" stop="33103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34269" g_stop="34209" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34208" i_stop="33865" i_length="344">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33864" g_stop="33403" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="522" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E333903" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34269" e_stop="34209"/>
          <exon e_start="33864" e_stop="33403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATGGTGCGTTAAAAAGCCTCAAATTTTTCATCTTCAACCTCAACATTTTTCCTTATTATGCTCCTAAACTTGTCACATATTTATAGCTAAGTTTTTTTTTTTTTTTAATAGGCGATGCCTAGTAGTTGGGTTTAAGGTTTAGTGATGTTAGTATATTGATTGCTAATAGTGTTATTTGTCTGTTTAATATACAGAAATTAAACTCAAATTATTGAGTATAGAATGAAAAAGTTGGTCCAGTAGGGATATTGATACTGAGGGTTCATATAGTCGACCTCAATTGTGAAAGTTGGTTTTTTTATTTCATTTTAATTTCTGAATTGACTGGTTTTCTATTTGTCATTCAGTGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTG</genome_strand>
        <mrna_strand>TCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG........................................................................................................................................................................................................................................................................................................................................................-GGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395417" ref_strand="+" ref_description="SGN-E395417 [TUS-16-G22]">
      <seq>atggccccaataatttctgtctccggcgatcagctgaacgacggtactggtcctcccttttcgacttgtgcctttttttcgctctattcctctcgcatttggattcctcctctctcgagattgagacctacatgcttggtgaaaccggttgcagtgcaacgtctgcctatgtgggtatggtctcgagttaatatatttcagcacaagcagtgcaaaatctagaggatttcatggcaggcaatggcctgccagctctgggtcgtgtgaagctcagtgatttggtaccattggaaggtcttccttctgattcgtataaattatctgtctcaactttgtcacagtcattggctcagtattcagctgccattatacagctatccacaagtgatggagctcttttaaggtctagtctagagtctgcccgactttactttcaacacaaaccctcttatcctgcagcggatgttattcattctgatgattctcaggagtggtgtaagacctctggttaccatgcagatcctcaacaatggcaagaaacatatgatttcaggccagggctcactccttcggaaccaccactgaaattgaattccctcctgctggtttggctgactttttctctttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="34679" stop="33104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34379" g_stop="34209" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34208" i_stop="33865" i_length="344">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33864" g_stop="33404" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="631" r_length="460" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E395417" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34379" e_stop="34209"/>
          <exon e_start="33864" e_stop="33404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCCCCAATAATTTCTGTCTCCGGCGATCAGCTGAACGACGGTACTGGTCCTCCCTTTTCGACTTGTGCCTTTTTTTCGCTCTATTCCTCTCGCATTTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATGGTGCGTTAAAAAGCCTCAAATTTTTCATCTTCAACCTCAACATTTTTCCTTATTATGCTCCTAAACTTGTCACATATTTATAGCTAAGTTTTTTTTTTTTTTTAATAGGCGATGCCTAGTAGTTGGGTTTAAGGTTTAGTGATGTTAGTATATTGATTGCTAATAGTGTTATTTGTCTGTTTAATATACAGAAATTAAACTCAAATTATTGAGTATAGAATGAAAAAGTTGGTCCAGTAGGGATATTGATACTGAGGGTTCATATAGTCGACCTCAATTGTGAAAGTTGGTTTTTTTATTTCATTTTAATTTCTGAATTGACTGGTTTTCTATTTGTCATTCAGTGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTT</genome_strand>
        <mrna_strand>ATGGCCCCAATAATTTCTGTCTCCGGCGATCAGCTGAACGACGGTACTGGTCCTCCCTTTTCGACTTGTGCCTTTTTTTCGCTCTATTCCTCTCGCATTTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG........................................................................................................................................................................................................................................................................................................................................................TGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAA-CCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACTTTTTCTCTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205788" ref_strand="+" ref_description="SGN-E205788 [cLEC-20-G3]">
      <seq>tggccccaataatttctgtctccggcgatcagctgaacgacggtactggtcctcccttttcgacttgtgcctttttttcgctctattcctctcgcatttggattcctcctctctcgagattgagacctacatgcttggtgaaaccggttgcagtgcaacgtctgcctatgtgggtatggtctcgagttaatatatttcagcacaagcagtgcaaaatctagaggatttcatggcaggcaatggcctgccagctctgggtcgtgtgaagctcagtgatttggtaccattggaaggtcttccttctgattcgtataaattatctgtctcaactttgtcacagtcattggctcagtattcagctgccattatacagctatccacaagtgatggagctcttttaaggtctagtctagagtctgcccgactttactttcaacacaaaccctcttatcctgcagcggatgttattcattctgatgattctcaggagtggtgtaagacctctggttaccatgcagatcctcaacaatggcaagaaacatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="34678" stop="33188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34378" g_stop="34209" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34208" i_stop="33865" i_length="344">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33864" g_stop="33488" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="547" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E205788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34378" e_stop="34209"/>
          <exon e_start="33864" e_stop="33488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCCCAATAATTTCTGTCTCCGGCGATCAGCTGAACGACGGTACTGGTCCTCCCTTTTCGACTTGTGCCTTTTTTTCGCTCTATTCCTCTCGCATTTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATGGTGCGTTAAAAAGCCTCAAATTTTTCATCTTCAACCTCAACATTTTTCCTTATTATGCTCCTAAACTTGTCACATATTTATAGCTAAGTTTTTTTTTTTTTTTAATAGGCGATGCCTAGTAGTTGGGTTTAAGGTTTAGTGATGTTAGTATATTGATTGCTAATAGTGTTATTTGTCTGTTTAATATACAGAAATTAAACTCAAATTATTGAGTATAGAATGAAAAAGTTGGTCCAGTAGGGATATTGATACTGAGGGTTCATATAGTCGACCTCAATTGTGAAAGTTGGTTTTTTTATTTCATTTTAATTTCTGAATTGACTGGTTTTCTATTTGTCATTCAGTGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGAT</genome_strand>
        <mrna_strand>TGGCCCCAATAATTTCTGTCTCCGGCGATCAGCTGAACGACGGTACTGGTCCTCCCTTTTCGACTTGTGCCTTTTTTTCGCTCTATTCCTCTCGCATTTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG........................................................................................................................................................................................................................................................................................................................................................TGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543473" ref_strand="+" ref_description="SGN-E543473 [TUS-65-E23](-)">
      <seq>ttgaacttgatatcattaccaaagatgaagctctaaaagttgcagtgcaagaacagagagctgcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcctcttgggcttcacattcaacaaattcccttggaagatggcattggtggccctgatataaactcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaagtgttgaacatcaattcattccaagcttcaatgggcaacctccggctaatcaagacgaccatcgtgataagtcagcatacgagaatctctcagctcttaggaaaggctctgatgaagacatcagcttttccttgcagttgggtggtcatgaatccaagagaagacgttcagagcctccaccaagcgcagatgaaccagaatgattttctccttttatctgctggtacatttaactttgaggtcttccatggaaaggaaatgcattttgtgtttggttctaaaacaagaaagaggtccaatttggtttttgaggtgctaaattttcatcatatggccattgatggcaacctgtgtatgaagagttctgtatttgaacatctcagtagtgcaaaatccaattgtaaaatacatgcaagctaaaaatgaggctgctttcttgagctattttgattcatggctccatgcagtagacataaaaatttgcctttgatgtatatttatgctggatatgttaagaaaccacagtgtttatatatatatatatatgtattgcaagtgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="36804" stop="34419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36504" g_stop="36466" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36465" i_stop="35500" i_length="966">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35499" g_stop="34724" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="816" r_length="777" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="820" polyA_stop="833"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E543473" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36504" e_stop="36466"/>
          <exon e_start="35499" e_stop="34724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGTATATTTATGCTGGATATGTTAAGAAACCA-AGTGTTTATATATATATATATATGTATTGCAA</genome_strand>
        <mrna_strand>TTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGTATATTTATGCTGGATATGTTAAGAAACCACAGTGTTTATATATATATATATATGTATTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329695" ref_strand="+" ref_description="SGN-E329695 [cTOD-3-F4]">
      <seq>gtttttttttcacttgcaatacatatatatatatatataaacacttggtttcttaacatatccagcataaatatacatcaaaggcaaatttttatgtctactgcatggagccatgaatcaaaatagctcaagaaagcagcctcatttttagcttgcatgtattttacaattggattttgcactactgagatgttcaaatacagaactcttcatacacaggttgccatcaatggccatatgatgaaaatttagcacctcaaaaaccaaattggacctctttcttgttttagaaccaaacacaaaatgcatttcctttccatggaagacctcaaagttaaatgtaccagcagataaaaggagaaaatcattctggttcatctgcgcttggtggaggctctgaacgtcttctcttggattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="34419" stop="35431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34724" g_stop="35131" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="421" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E329695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34724" e_stop="35131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAATACATATATATATATATATAAACACTTGGTTTCTTAACATATCCAGCATAAATATACATCAAAGGCAAATTTTTATGTCTACTGCATGGAGCCATGAATCAAAATAGCTCAAGAAAGCAGCCTCATTTTTAGCTTGCATGTATTTTACAATTGGATTTTGCACTACTGAGATGTTCAAATACAGAACTCTTCATACACAGGTTGCCATCAATGGCCATATGATGAAAATTTAGCACCTCAAAAACCAAATTGGACCTCTTTCTTGTTTTAGAACCAAACACAAAATGCATTTCCTTTCCATGGAAGACCTCAAAGTTAAATGTACCAGCAGATAAAAGGAGAAAATCATTCTGGTTCATCTGCGCTTGGTGGAGGCTCTGAACGTCTTCTCTTGGATTCATG</genome_strand>
        <mrna_strand>TTGCAATACATATATATATATATATAAACACTTGGTTTCTTAACATATCCAGCATAAATATACATCAAAGGCAAATTTTTATGTCTACTGCATGGAGCCATGAATCAAAATAGCTCAAGAAAGCAGCCTCATTTTTAGCTTGCATGTATTTTACAATTGGATTTTGCACTACTGAGATGTTCAAATACAGAACTCTTCATACACAGGTTGCCATCAATGGCCATATGATGAAAATTTAGCACCTCAAAAACCAAATTGGACCTCTTTCTTGTTTTAGAACCAAACACAAAATGCATTTCCTTTCCATGGAAGACCTCAAAGTTAAATGTACCAGCAGATAAAAGGAGAAAATCATTCTGGTTCATCTGCGCTTGGTGGAGGCTCTGAACGTCTTCTCTTGGATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304583" ref_strand="+" ref_description="SGN-E304583 [cLEX-11-N1]">
      <seq>atatatatatatatataaacacttggtttcttaacatatccagcataaatatacatcaaaggcaaatttttatgtctactgcatggagccatgaatcaaaatagctcaagaaagcagcctcatttttagcttgcatgtattttacaattggattttgcactactgagatgttcaaatacagaactcttcatacacaggttgccatcaatggccatatgatgaaaatttagcacctcaaaaaccaaattggacctctttcttgttttagaaccaaacacaaaatgcatttcctttccatggaagacctcaaagttaaatgtaccagcagataaaaggagaaaatcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="34433" stop="35380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34733" g_stop="35080" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E304583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34733" e_stop="35080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATATATATATATAAACACTTGGTTTCTTAACATATCCAGCATAAATATACATCAAAGGCAAATTTTTATGTCTACTGCATGGAGCCATGAATCAAAATAGCTCAAGAAAGCAGCCTCATTTTTAGCTTGCATGTATTTTACAATTGGATTTTGCACTACTGAGATGTTCAAATACAGAACTCTTCATACACAGGTTGCCATCAATGGCCATATGATGAAAATTTAGCACCTCAAAAACCAAATTGGACCTCTTTCTTGTTTTAGAACCAAACACAAAATGCATTTCCTTTCCATGGAAGACCTCAAAGTTAAATGTACCAGCAGATAAAAGGAGAAAATCATTC</genome_strand>
        <mrna_strand>ATATATATATATATATAAACACTTGGTTTCTTAACATATCCAGCATAAATATACATCAAAGGCAAATTTTTATGTCTACTGCATGGAGCCATGAATCAAAATAGCTCAAGAAAGCAGCCTCATTTTTAGCTTGCATGTATTTTACAATTGGATTTTGCACTACTGAGATGTTCAAATACAGAACTCTTCATACACAGGTTGCCATCAATGGCCATATGATGAAAATTTAGCACCTCAAAAACCAAATTGGACCTCTTTCTTGTTTTAGAACCAAACACAAAATGCATTTCCTTTCCATGGAAGACCTCAAAGTTAAATGTACCAGCAGATAAAAGGAGAAAATCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350539" ref_strand="+" ref_description="SGN-E350539 [cTOS-5-K10]">
      <seq>ctcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaagtgttgaacatcaattcattccaagcttcaatgggcaacctccggctaatcaagacgaccatcgtgataagtcagcatacgagaatctctcagctcttaggaaaggctctgatgaagacatcagcttttccttgcagttgggtggtcatgaatccaagagaagacgttcagagcctccaccaagcgcagatgaaccagaatgattttctccttttatctgctggtacatttaactttgaggtcttccatggaaaggaaatgcattttgtgtttggttctaaaacaagaaagaggtccaatttggtttttgaggtgctaaattttcatcatatggccattgatggcaacctgtgtatgaagagttctgtatttgaacatctcagtagtgcaaaatccaattgtaaaatacatgcaagctaaaaatgaagctgctttcttgagctattttgattcatggctccatgcagtagacataaaaatttgcctttgatggatatttatgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="35636" stop="34472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35336" g_stop="34772" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E350539" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35336" e_stop="34772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGTATATTTATGCTGG</genome_strand>
        <mrna_strand>CTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAAGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGGATATTTATGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418642" ref_strand="-" ref_description="SGN-E418642 [STM-27-P16]">
      <seq>tgctcaatttccttgaacttgatatcatcaccaaagatgaagctctaaaagttgcagtgcaagaacagagagcagcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcctcttgggcttcacattcaacaaattcccttggaagatggcattggtggccctgatataaactcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaagtgttgaacatcaattcattccaagcttcaatgggcaacctccggctaatcaagacgatcatcgtgataagtcagcatacgagaatctctcagctcttaggaaaggctctgatgaagacatcagcttttccttgcagttgggtggtcatgaatccaagagaagacgttcagaacctccaccaagcgcagatgaaccagaatgattttctccttttatctgctggtacattttactttgaggtcttccacggaaatgcatttggtgtttggttctaaaacaaagaaagaggtccaatttggtttttgaggtgctaaattttcatcatgtggccattgatggcaacctgtgtatgaagagtttttgtatttgaacatgtcagtagtgcaaaatccaattgtaaaatacatgcaagttaaaaatgagtctgctttcttgagctattttgattcatggctccatgcagtctcaaaatcatcaacatgaaaaacttgcctttgatgtatatttatgctggatatcttaagaaaaaaagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="36816" stop="34451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36516" g_stop="36466" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36465" i_stop="35500" i_length="966">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35499" g_stop="34812" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="736" r_length="685" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E418642" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418642" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36516" e_stop="36466"/>
          <exon e_start="35499" e_stop="34812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAAC-AAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAG-TTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCA</genome_strand>
        <mrna_strand>TGCTCAATTTCCTTGAACTTGATATCATCACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCAGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGATCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAACCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTTACTTTGAGGTCTTCC-----ACGGAAATGCATTTGGTGTTTGGTTCTAAAACAAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATGTGGCCATTGATGGCAACCTGTGTATGAAGAGTTTTTGTATTTGAACATGTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGTTAAAAATGAGTCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745783" ref_strand="+" ref_description="SGN-E745783 [GI|47105087]">
      <seq>gataatactcttaacactggggcctctcatggcgtagcgtgggtttgactatgtctgcagccttttgttttcctttcccaatttcatatcgagtttaggctgcttgtgtgagaaatatggatcgagcaaggttaaataaaagaacccattgctcaggttcaacaccgtcagaggagtcagccttagatcttgaaaaatactgttgcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcggaaatcttcagaaaggggttttgccagaaactcttggccgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcatagcaaactcttgcgttgctacagtctcggtacagcaattggttttcgtattcgacgtggtgttttgactgatataccagcaatactagtgtttgtatcccggaaagttcacaaacaatggcttagtccaatccagtgtctacctactgctttagagggccctggaggtgtgtggtgtgaagtggatgtggtcgagttctcctattttggtgcaccagagccaacacccaaggagcagttgtacacagagatagtcgatgacctgcggggtagtgacccatatattggttcaggatctcaggtagcaagccaggagacatatggaaccttgggcgctattgtgaggagtctgtcaggcaatcgacaagttggtttcctaacaaaccggcatgttgctgttgacttagattacccaaatcaaaaaatgtttcatcctttacctccaacattaggacctggagtatatctgggttcagtggagagagctacatcttttatcagagacgacctttggtatggcatatttgctggcataaatccagagacatttgtcagggcagatggtgcattcattcctttcacagatgattttgatatgacctctgttactacttctgttaagggcataggggaaattggagatgtcaaaattatagatttgcaatctcctattagtagtctcatcggaaagcaagtgacgaaggtcggaagaagctctggattgactacaggcactgtcttggcatatgcccttgaatataatgatgagaaagggatttgcttcttgactgattttcttgtcaatggagaaaaccagcagacttttgaccttgaaggagacagtggaagtttaatcgttttgaagggtgagaatggggaaaaaccccgaccaattggttttatttggggtggaactgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaattggactagtggagttgaccttgggcgtctgctcaatttccttgaacttgatatcattaccaaagatgaagctctaaaagttgcagtgcaagaacagagagctgcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcctcttgggcttcacattcaacaaattcccttggaagatggcattggtggccctgatataaactcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaagtgttgaacatcaattcattccaagcttcaatgggcaacctccggctaatcaagacgaccatcgtgataagtcagcatacgagaatctctcagctcttaggaaaggctctgatgaagacatcagcttttccttgcagttgggtggtcatgaatccaagagaagacgttcagagcctccaccaagcgcagatgaaccagaatgattttctccttttatctgctggtacatttaactttgaggtcttccatggaaaggaaatgcattttgtgtttggttctaaaacaagaaagaggtccaatttggtttttgaggtgctaaattttcatcatatggccattgatggcaacctgtgtatgaagagttctgtatttgaacatctcagtagtgcaaaatccaattgtaaaatacatgcaagctaaaaatgaggctgctttcttgagcccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="41538" stop="34536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41239" g_stop="41128" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41127" i_stop="40013" i_length="1115">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40012" g_stop="39520" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="605" r_length="493" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39519" i_stop="39202" i_length="318">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39201" g_stop="39058" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="749" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39057" i_stop="38247" i_length="811">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38246" g_stop="38006" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="990" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38005" i_stop="36967" i_length="1039">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36966" g_stop="36466" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="991" r_stop="1491" r_length="501" r_score="0.998"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36465" i_stop="35500" i_length="966">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35499" g_stop="34838" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1492" r_stop="2153" r_length="662" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2158" polyA_stop="2172"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E745783" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2153</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41239" e_stop="41128"/>
          <exon e_start="40012" e_stop="39520"/>
          <exon e_start="39201" e_stop="39058"/>
          <exon e_start="38246" e_stop="38006"/>
          <exon e_start="36966" e_stop="36466"/>
          <exon e_start="35499" e_stop="34838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAGGTAAAAAAACTCATCTTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACTAAAGGAAAAAAAAATCTTGCCATGTTTATCTGGTGCTATAACACATTTGATGGATCTAAATAGCTTTCAAATTGCTTACCATTCACTTTATACAGTCTATATTGTCATGACTTGTATTGGACTGGAACAATAAAGTTACTCAAGGCCAGCAGTGCTACAGTTTCTTTTTATCATTTGGATCTTTTCTACAGTCTTCCCTTTGGTGATGTTAACAATATTATATTCAGTGGATATGTGCGTTTTGGCTGTATGGATTTCCATTTTCATTTTTGAGACTGAGTTTACTGGATATTGTTAAATCTTTTAAATAACGTTGCAGCTTTAATTAAAGAAACATGTGAAACAAATTGGAATTTATGCTAAATTATTGCATTGGCCGTTCTCTGTGGTTCGAACACTGTTCTTCCTTTATCAGTTTTGACATAGATTACTAGAGCATACCTCTATGATAGCAAAGATCTTGTCCTTGAAAGTCAGACTTTAGGGTAAATTTTTGGTTTTCTTCCTGTTGGACTTTGAATAACAAGTTTGTCAACTATGAGCAGAAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAGGTGATCAAAAAGATGCCTAATTATCTCTTATCCTATTTCTGTCACCCTCTCGTGAAAGATTTTCCTGAATTAGGACAAAAAAAGATGACGAGACTTTACTTCCTTATAAAAACAAAAGAGGATGAAATTTACTTCATTGATTTTCTTTTATCTTCTCTTGCTGTATTCCTCCCCGTCACTTTTCCTGATAGGGATTGTTCAATTGTGTGAGTTTAACTATTATTAGAGCCCAAAGAATCAACACTTGCTAACAAATGTTATTCTTGCATCATTTATTCCTTAGTTTTCTCTATGCTTAAATATGTTACTTATCATCAGGGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAGGTAGTTTGATGTTTATCACAACTTTTCACTCTAAAGATGCTTTGATTGAGTTTTGATGAGTTCATAAGAGAGTTGAAGTCTAAGTCGAGTCCTAGAAAATGTATCAATCAATTTTCAAATCACGTAGGTTGGGCAAATTTATGGCAAGTATTGCTATTTTCATGAGTCTTGTTAGTAGATCGACTCTAAGCATCTTGCATAAAAGTTAAAACAACTATTTGGGTGTGGCAGATCCTTGGAGCCATCTGCTTCTTTGCTTCTGAGCACATTTTGTATTTTTCTGAAGTGCTTATCATTCAGTATCGGAACTGGATTTATGCTTACCATATTTTTCTGAAACTATGCAGCAAGGACAACTTATGTTAGTCTTATGTACTAAAAGGCATCTACTAATTTTGAAAAGGTTGGAAGAAATGGATGATGATTTCCTGTAATGTGTCTAAGAGCCCATAAACTTTATATGTGCACAAAGACACTTTTTAACACCTTTCTCCATTGTTTGGTTAGACTCACATCCTTTCTGAGTGAATTGGTTAGTCATCAAATCAGTTGAGTTCCTTTGAAATCTCCAGCAAAGGTTAAATACATTATAAGGGACTCGGGGAAAGGTTTTGTTTGTCAACAAGTTAGTTGAGCTTCTTTGTTGAGATCTCCAGTCGTTTTTAATTGCATCTTAGGAAGATAAACAATTAAAGAGTCTGCAGAAGAAATCAGATGTAAACTACTTGTTTGGCTTGTCATTTCTTTCTTCCCTAAGGTTATCACTCTGATCGTACATGTTAATTCACCACATTTTATTGGAAACATCTAGGTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAGGTTAAGTGTTTCTTCTTACCTTCTTTACTGATTTATGTTGGAAGGAAGAATGTTCTGATGCTACAAATCATTATTGAAATTCGCTAAATGAATAGTGGATTATGATGTCTCGCCTTGTGCTTTAGTAAATATGTCTTGTGATACTAATCCTTTCTCCATCATCAATTCATATCTATCATTTCTTGGATGGAAGAAGGTTATGTAAAAACTTTGAGATCTCACTAATCAGATTCCATTGTATTGATCCATAAGGTGTTGTATGAAATGAAATATAATCAAATGATAAAAATGAGGTTGTCTTGCTAATGGGGGACAAAGTTAACTGATACCTGTGCTGATGGGAGGTAGCAGGTATCCTGTGGGATTAGTCGAGGTGTGTGCAAGCTGGCCCGCACACCACCTGTTATAAAAGAATATGTTAGACAATGTCTCTTTTGTCCCGTGTGATTATATTTTCATCCTGCCACCACAACATATCATGGATTAAATCAATGTTATCAAAGGCGAAAAGCGCAAAAAAGCTCCAAGGTCCGTGGGGACTTTAAGCTCAAAGCACAAATAAAGCTTGGGCTTTAATTAAAAAAGGCGCAAAAGGAGAAAAAAAACAAATATATATGTTTAGTCCAAAACTAATAATTATAAACATTATGACAAATATATGACCAATGAATTGAAATTTTTTTAGTTATGAAGTGAATTATCAATTGTTTCGTGTCAATTCTTCATAAGAGGTTCATTGTCAAGAAAGTTTGTCTTAGAACCTTGACGACGATACTGAAGCGCATATAAAGCGAGGCGAAGCGCTCAACACATTTTGAGCCTCGCTTTGGGGCTTAAGCGCGCCTTTGATCTGCAAGTGCAACCCATGCTAGAAATCTTCATTTTTGTTTCTTTCTATGTTTTTAGATAGATGAAAAGTTATTCTTTGCGCACTTGCATGTTACCTGCTCTGCTCCTGAAGGTTCTTAATTTGTTAGAGTTATTATTTTTCTTATAGCATTGGTAAGATTTCTAAATGTGGAATTGATTACTCGTGCAGAGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGA</genome_strand>
        <mrna_strand>GATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTCTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAG..............................................................................................................................................................................................................................................................................................................................GGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTTTTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700120" ref_strand="+" ref_description="SGN-E700120 [FA12AG08]">
      <seq>gacacattggaagtttaatcgttttgaagggtgagaatggggaaaaaccccgaccaattggtattatttggggtggaactgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaattggactagtggagttgaccttgggcgtctgctcaatttccttgaacttgatatcattaccaaagatgaagctctaaaagttgcagtgcaagaacagagagctgcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcctcttgggcttcacattcaacaaattcccttggaagatggcattggtggccctgatataaactcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaagtgttgaacatcaattcattccaagcttcaatgggcaacctccggctaatcaagacgaccatcgtgataagtcagcatacgagaatctctcagctcttaggaaaggctctgatgaagacatcagcttttccttgcagttgggtggtcatgaatccaagagaagacgttcagagcctccaccaagcgcagatgaaccagaatgattttctccttttatctgctggtacatttaactttgaggtcttccatggaaaggaaatgcattttgtgtttggttctaaaacaagaaagaggtccaatttggtttttgaggtgctaaattttcatcatatggccattgatggcaacctgtgtatgaagagttctgtatttgaacatctcaatagtgcaaaatccaattgtaaaatacatgcaccctaaaaatgaggctgctttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="36972" stop="34539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36672" g_stop="36466" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36465" i_stop="35500" i_length="966">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35499" g_stop="34839" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="868" r_length="661" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E700120" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36672" e_stop="36466"/>
          <exon e_start="35499" e_stop="34839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTG</genome_strand>
        <mrna_strand>GACACATTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAATAGTGCAAAATCCAATTGTAAAATACATGCACCCTAAAAATGAGGCTGCTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431116" ref_strand="+" ref_description="SGN-E431116 [STM-54-N24]">
      <seq>ctttttaacttgcatcattttacattggatttgcactactgacatgttcaaatacaaaactcttctaccaggttgccatcaatggccacatgatgaaaatttacacctcaaaaacaaattggacctctttctttgttttagaaccaaacaccaaatgcatttccgtggaagacctcaagtaaaatgtaccacccataaaagagaaaatcattctggttcatctgcgcttggtggaggttctgaactcttctcttggattcatgaccacccaactgcaaggaaaactgatgcttcatcagagcctttcctaagagctgagagattctcgatgctgacttatcacgatgatcatcttgattagccggaggttgcccattgaacttggaatgaattgtatgttcaacacttgcatcaagatgatcccactttcttccagtaaatgtagcttccacaggtgaagagttatatcagggccacaatgccatcttcaagggaatttgttgatgtgaagcnaagaggctctattttgtcctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="34571" stop="35716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34854" g_stop="35416" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E431116" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.048" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E431116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34854" e_stop="35416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTAGCTTGCATGTATTTTACAATTGGATTTTGCACTACTGAGATGTTCAAATACAGAACTCTTCATACACAGGTTGCCATCAATGGCCATATGATGAAAATTTAGCACCTCAAAAACCAAATTGGACCTCTTTC-TTGTTTTAGAACCAAACACAAAATGCATTTCCTTTCCATGGAAGACCTCAAAGTTAAATGTACCAGCAGATAAAAGGAGAAAATCATTCTGGTTCATCTGCGCTTGGTGGAGGCTCTGAACGTCTTCTCTTGGATTCATGACCACCCAACTGCAAGGAAAAGCTGATGTCTTCATCAGAGCCTTTCCTAAGAGCTGAGAGATTCTCGTATGCTGACTTATCACGATGGTCGTCTTGATTAGCCGGAGGTTGCCCATTGAAGCTTGGAATGAATTG-ATGTTCAACACTTGCATCAAAGTTGATCCCACTTTCTTCCAAGTTAAATGTAGCTTCCACAGGTGAAGAGTTTATATCAGGGCCACCAATGCCATCTTCCAAGGGAATTTGTTGAATGTGAAGCCCAAGAGGCTCTATTTTGTCCTTTGG</genome_strand>
        <mrna_strand>CTTTTTAACTTGCAT-CATTTTACA-TTGGA-TTTGCACTACTGACATGTTCAAATACAAAACTCTTC-TAC-CAGGTTGCCATCAATGGCCACATGATGAAAATTTA-CACCTCAAAAA-CAAATTGGACCTCTTTCTTTGTTTTAGAACCAAACACCAAATGCA-----TTTCCGTGGAAGACCTC-AAGTAAAATGTACCA-CCCATAAAA-GAGAAAATCATTCTGGTTCATCTGCGCTTGGTGGAGGTTCTGAAC-TCTTCTCTTGGATTCATGACCACCCAACTGCAAGGAAAA-CTGATG-CTTCATCAGAGCCTTTCCTAAGAGCTGAGAGATTCTCG-ATGCTGACTTATCACGATGATCATCTTGATTAGCCGGAGGTTGCCCATTGAA-CTTGGAATGAATTGTATGTTCAACACTTGCATC-AAGATGATCCCACTTTCTTCC-AG-TAAATGTAGCTTCCACAGGTGAAGAG-TTATATCAGGGCCA-CAATGCCATCTT-CAAGGGAATTTGTTG-ATGTGAAG-CNAAGAGGCTCTATTTTGTCCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737983" ref_strand="+" ref_description="SGN-E737983 [LC11DF12]">
      <seq>gagatgtcaaaattatagatttgcaatctcctattagtagtctcatcggaaagcaagtgacgaaggtcggaagaagctctggattgactacaggcactgtcttggcatatgcccttgaatataatgatgagaaagggatttgcttcttgactgattttcttgtcaatggagaaaaccagcagacttttgaccttgaaggagacagtggaagtttaatcgttttgaagggtgagaatggggaaaaaccccgaccaattggtattatttggggtggaactgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaattggactagtggagttgaccttgggcgtctgctcaatttccttgaacttgatatcattaccaaagatgaagctctaaaagttgcagtgcaagaacagagagctgcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcctcttgggcttcacattcaacaaattcccttggaagatggcattggtggccctgatataaactcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaagtgttgaacatcaattcattccaagcttcaatgggcaacctccggctaatcaagacgaccatcgtgataagtcagcatacgagaatctctcagctcttaggaaaggctctgatgaagacatcagcttttccttgcagttgggtggtcatgaatccaagagaagacgttcagagcctccaccaagcgcagatgaaccagaatgattttctccttttatctgctggtacatttaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="37170" stop="34743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36870" g_stop="36466" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36465" i_stop="35500" i_length="966">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35499" g_stop="35043" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="862" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E737983" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36870" e_stop="36466"/>
          <exon e_start="35499" e_stop="35043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACT</genome_strand>
        <mrna_strand>GAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736466" ref_strand="+" ref_description="SGN-E736466 [LC05DE03]">
      <seq>cggagatgtcaaaattatagatttgcaatctcctattagtagtctcatcggaaagcaagtgacgaaggtcggaagaagctctggattgactacaggcactgtcttggcatatgcccttgaatataatgatgagaaagggatttgcttcttgactgattttcttgtcaatggagaaaaccagcagacttttgaccttgaaggagacagtggaagtttaatcgttttgaagggtgagaatggggaaaaaccccgaccaattggtattatttggggtggaactgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaattggactagtggagttgaccttgggcgtctgctcaatttccttgaacttgatatcattaccaaagatgaagctctaaaagttgcagtgcaagaacagagagctgcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcctcttgggcttcacattcaacaaattcccttggaagatggcattggtggccctgatataaactcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaagtgttgaacatcaattcattccaagcttcaatgggcaacctccggctaatcaagacgaccatcgtgataagtcagcatacgagaatctctcagctcttangaaaggctctgatgaagacatcagcttttccttgcagttgggtggtcatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="37171" stop="34825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36872" g_stop="36466" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36465" i_stop="35500" i_length="966">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35499" g_stop="35125" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="782" r_length="375" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E736466" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36872" e_stop="36466"/>
          <exon e_start="35499" e_stop="35125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAAT</genome_strand>
        <mrna_strand>CGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTANGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543474" ref_strand="+" ref_description="SGN-E543474 [TUS-65-E23]">
      <seq>ggcatatttgctggcataaatccagagacatttgtcagggcagatggtgcattcattcctttcacagatgattttgatatgacctctgttactacttctgttaagggcataggggaaattggagatgtcaaaattatagatttgcaatctcctattagtagtctcatcggaaagcaagtgacgaaggtcggaagaagctctggattgactacaggcactgtcttggcatatgcccttgaatataatgatgagaaagggatttgcttcttgactgattttcttgtcaatggagaaaaccagcagacttttgaccttgaaggagacagtggaagtttaatcgttttgaagggtgagaatggggaaaaaccccgaccaattggtattatttggggtggaactgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaattggactagtggagttgaccttgggcgtctgctcaatttccttgaacttgatatcattaccaaagatgaagctctaaaagttgcagtgcaagaacagagagctgcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcctcttgggcttcacattcaacaaattcccttggaagatggcatgggtggccctgatataaactcttcacctgtggaagctacatttaacttggaagaaagtgggatcaactttgatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="38330" stop="34978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38030" g_stop="38006" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38005" i_stop="36967" i_length="1039">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36966" g_stop="36466" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="526" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36465" i_stop="35500" i_length="966">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35499" g_stop="35278" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="748" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E543474" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38030" e_stop="38006"/>
          <exon e_start="36966" e_stop="36466"/>
          <exon e_start="35499" e_stop="35278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATATTTGCTGGCATAAATCCAGGTTAAGTGTTTCTTCTTACCTTCTTTACTGATTTATGTTGGAAGGAAGAATGTTCTGATGCTACAAATCATTATTGAAATTCGCTAAATGAATAGTGGATTATGATGTCTCGCCTTGTGCTTTAGTAAATATGTCTTGTGATACTAATCCTTTCTCCATCATCAATTCATATCTATCATTTCTTGGATGGAAGAAGGTTATGTAAAAACTTTGAGATCTCACTAATCAGATTCCATTGTATTGATCCATAAGGTGTTGTATGAAATGAAATATAATCAAATGATAAAAATGAGGTTGTCTTGCTAATGGGGGACAAAGTTAACTGATACCTGTGCTGATGGGAGGTAGCAGGTATCCTGTGGGATTAGTCGAGGTGTGTGCAAGCTGGCCCGCACACCACCTGTTATAAAAGAATATGTTAGACAATGTCTCTTTTGTCCCGTGTGATTATATTTTCATCCTGCCACCACAACATATCATGGATTAAATCAATGTTATCAAAGGCGAAAAGCGCAAAAAAGCTCCAAGGTCCGTGGGGACTTTAAGCTCAAAGCACAAATAAAGCTTGGGCTTTAATTAAAAAAGGCGCAAAAGGAGAAAAAAAACAAATATATATGTTTAGTCCAAAACTAATAATTATAAACATTATGACAAATATATGACCAATGAATTGAAATTTTTTTAGTTATGAAGTGAATTATCAATTGTTTCGTGTCAATTCTTCATAAGAGGTTCATTGTCAAGAAAGTTTGTCTTAGAACCTTGACGACGATACTGAAGCGCATATAAAGCGAGGCGAAGCGCTCAACACATTTTGAGCCTCGCTTTGGGGCTTAAGCGCGCCTTTGATCTGCAAGTGCAACCCATGCTAGAAATCTTCATTTTTGTTTCTTTCTATGTTTTTAGATAGATGAAAAGTTATTCTTTGCGCACTTGCATGTTACCTGCTCTGCTCCTGAAGGTTCTTAATTTGTTAGAGTTATTATTTTTCTTATAGCATTGGTAAGATTTCTAAATGTGGAATTGATTACTCGTGCAGAGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAA</genome_strand>
        <mrna_strand>GGCATATTTGCTGGCATAAATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATGGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418641" ref_strand="+" ref_description="SGN-E418641 [STM-27-P16]">
      <seq>gttagggcagatggtgcattcatccctttcacagatgattttgatatgacctctgttactacttctgttaagggcataggggaaattggagatgtcaaaattatagatttgcaatctcctattagtagtctcattggaaagcaagtgacgaaggtcggaagaagctctggattgactacggggactgtcttggcatatgcccttgaatacaatgatgagaaggggatttgcttcttgactgattttcttgtcaatggagaaaaccagcagacgtttgaccttgaaggagacagtggaagtttaatcgttttaaagggtgagaatggggaaaaaccccgaccaattggtattatttggggtggaaccgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaactggactagtggagttgaccttgggcgcctgctcaatttccttgaacttgatatcatcaccaaagatgaagctctaaaagttgcagtgcaagaacagagagcagcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcctcttgggcttcacattcaacaaattcccttggaagatggcattggtggccctgatataaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="37258" stop="35034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36958" g_stop="36466" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36465" i_stop="35500" i_length="966">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35499" g_stop="35334" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="659" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E418641" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36958" e_stop="36466"/>
          <exon e_start="35499" e_stop="35334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTC</genome_strand>
        <mrna_strand>GTTAGGGCAGATGGTGCATTCATCCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATTGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACGGGGACTGTCTTGGCATATGCCCTTGAATACAATGATGAGAAGGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACGTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTAAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACCGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAACTGGACTAGTGGAGTTGACCTTGGGCGCCTGCTCAATTTCCTTGAACTTGATATCATCACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCAGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274810" ref_strand="+" ref_description="SGN-E274810 [cLEN-13-D15]">
      <seq>ctacttctgttaagggcataggggaaattggagatgtcaaaattatagatttgcaatctcctattagtagtctcatcggaaagcaagtgacgaaggtcggaagaagctctggattgactacaggcactgtcttggcatatgcccttgaatataatgatgagaaagggatttgcttcttgactgattttcttgtcaatggagaaaaccagcagacttttgaccttgaaggagacagtggaagtttaatcgttttgaagggtgagaatggggaaaaaccccgaccaattggtattatttggggtggaactgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaattggactagtggagttgaccttgggcgtctgctcaatttccttgaacttgatatcattaccaaagatgaagctctaaaagttgcagtgcaagaacagagagctgcctctgccacaatggtgggctctacggctggggattcttcacctcctgatataatgcttccaaaggacaaaatagagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="37200" stop="35097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36900" g_stop="36466" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36465" i_stop="35500" i_length="966">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35499" g_stop="35397" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="538" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E274810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36900" e_stop="36466"/>
          <exon e_start="35499" e_stop="35397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAGGTTTGTGGTCCTCAGCACTTGATTTCTGCCGATAAAGCTAGCTGTTTTTTTCTTTTTTGGTTACATGCACAAAAAATAAATCTCCAATGTGTCCCCCCCTAAATTTATCTTTTACCACTGTGCTTCCTAATTTGTTTATCGGGCATAGGGCTTACAGTTAGTTAGTGATGTTGAGACTTGAGAGTGATACATCCCAAGTTTTTTCAGAGGGGTGGTTGTAGAAGGAAAAACATGTGTGATTTAGAGTGGACGAGAAGCTAAGAAGCTCAATGGATGTCAAGATCTTTAGAATCGTACAGTGAGTTGTTAGATCTAGCTATACTAAATTGGCCTATTAGAAGCCACTTGACAATTGGCTGATTATCTTTCTCTAAGTGAGCAAGTTTCATTGGTTGATATTTTTATCAAAACCATCTCTTCTAGATTTAGTAGTATGTAGTTTGACATTTGTTGAAAAATTTGTGAATGCAAGGAGTTCCAAGAAGGCATGATAAATTGCTTTGTAGAATTAGTTTATTATTATCCCACTGTTTGCACATTAGTTCTCAGGCATCCAGTTGGTCTGTTTAGCTTCATAGTTCAGAAGCACGACTTGTCCTCCTTGAAATGACATGCTCAATTTCCTCTACTGACGTTATTTGGGTAGACGGTATTCCTTTCTTCATTTGTATAATGTTTGTAGGATAGATAAAGCAAGTGAATTCCATCCCTTCTGCTAGCCGTTAGTATTAGCACCACAAGATGGAATAGAACTAAGCTGACTCCCGTTCTTAATCCCAATCCATGGAGACAAAATAATGTCTATTCAAAGTGATGTAGGTTCTGTTGCTTTAAATCCTGTCACATCTGTATGACTTACTCCGACAAATTTACCATTTCATCAAAGTCTCCTCTTTTTCCCGATAAAAAGATCTTCAATTCTTTGAGGGTATGTAATAACCTTGTCTGTGTCTATCACTGGTGTAGTTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCC</genome_strand>
        <mrna_strand>CTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304877" ref_strand="+" ref_description="SGN-E304877 [cLEX-10-A20]">
      <seq>gcatatttgctggcataaatccagagacatttgtcagggcagatggtgcattcattcctttcacagatgattttgatatgacctctgttactacttctgttaagggcataggggaaattggagatgtcaaaattatagatttgcaatctcctattagtagtctcatcggaaagcaagtgacgaaagtcggaagaagctctggattgactacaggcactgtcttggcatatgcccttgaatataatgatgagaaagggatttgcttcttgactgattttcttgtcaatggagaaaaccagcagacttttgaccttgaaggagacagtggaagtttaatcgttttgaagggtgagaatggggaaaaaccccgaccaattggtattatttggggtggaactgcaaataggggacggcttaaactaaaggtgggacaatctccagaaaattggactagtggagttgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="38329" stop="36226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38029" g_stop="38006" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38005" i_stop="36967" i_length="1039">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36966" g_stop="36526" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="465" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E304877" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38029" e_stop="38006"/>
          <exon e_start="36966" e_stop="36526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATATTTGCTGGCATAAATCCAGGTTAAGTGTTTCTTCTTACCTTCTTTACTGATTTATGTTGGAAGGAAGAATGTTCTGATGCTACAAATCATTATTGAAATTCGCTAAATGAATAGTGGATTATGATGTCTCGCCTTGTGCTTTAGTAAATATGTCTTGTGATACTAATCCTTTCTCCATCATCAATTCATATCTATCATTTCTTGGATGGAAGAAGGTTATGTAAAAACTTTGAGATCTCACTAATCAGATTCCATTGTATTGATCCATAAGGTGTTGTATGAAATGAAATATAATCAAATGATAAAAATGAGGTTGTCTTGCTAATGGGGGACAAAGTTAACTGATACCTGTGCTGATGGGAGGTAGCAGGTATCCTGTGGGATTAGTCGAGGTGTGTGCAAGCTGGCCCGCACACCACCTGTTATAAAAGAATATGTTAGACAATGTCTCTTTTGTCCCGTGTGATTATATTTTCATCCTGCCACCACAACATATCATGGATTAAATCAATGTTATCAAAGGCGAAAAGCGCAAAAAAGCTCCAAGGTCCGTGGGGACTTTAAGCTCAAAGCACAAATAAAGCTTGGGCTTTAATTAAAAAAGGCGCAAAAGGAGAAAAAAAACAAATATATATGTTTAGTCCAAAACTAATAATTATAAACATTATGACAAATATATGACCAATGAATTGAAATTTTTTTAGTTATGAAGTGAATTATCAATTGTTTCGTGTCAATTCTTCATAAGAGGTTCATTGTCAAGAAAGTTTGTCTTAGAACCTTGACGACGATACTGAAGCGCATATAAAGCGAGGCGAAGCGCTCAACACATTTTGAGCCTCGCTTTGGGGCTTAAGCGCGCCTTTGATCTGCAAGTGCAACCCATGCTAGAAATCTTCATTTTTGTTTCTTTCTATGTTTTTAGATAGATGAAAAGTTATTCTTTGCGCACTTGCATGTTACCTGCTCTGCTCCTGAAGGTTCTTAATTTGTTAGAGTTATTATTTTTCTTATAGCATTGGTAAGATTTCTAAATGTGGAATTGATTACTCGTGCAGAGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACC</genome_strand>
        <mrna_strand>GCATATTTGCTGGCATAAATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAAGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442480" ref_strand="+" ref_description="SGN-E442480 [cSTA-33-N23]">
      <seq>tggtgcattcatccctttcacagatgattttgatatgacctctgttactacttctgttaagggcataggggaaattggagatgtcaaaattatagatttgcaatctcctattagtagtctcattggaaagcaagtgacgaaggtcggaagaagctctggattgactacggggactgtcttggcatatgcccttgaatacaatgatgagaaggggatttgcttcttgactgattttcttgtcaatggagaaaaccagcagacgtttgaccttgaaggagacagtggaagtttaatcgttttaaagggtgagaatggggaaaaaccccgaccaattggtattatttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="37247" stop="36300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36947" g_stop="36600" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E442480" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36947" e_stop="36600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGG</genome_strand>
        <mrna_strand>TGGTGCATTCATCCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATTGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACGGGGACTGTCTTGGCATATGCCCTTGAATACAATGATGAGAAGGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACGTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTAAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431115" ref_strand="+" ref_description="SGN-E431115 [STM-54-N24]">
      <seq>gggtcctggaggtgtgtggtgtgaagtggatgtggtcgagttttcctattttggtgcaccagagccgacgcccacggagcgattgtacacagagatagtcgatgacctgcggggtactgacccatatattggttcaggatctcaggtagcaagccaggagacatatggaaccttgggtgctattgtgaggagcctgtctcgcaatcgacaagttggtttcctaacaaaccggcatgttgctgttgacttagattacccaaatcaagaaatgtttcttcctttacctccaacacttggacctgaagtatatctgggttcagtggagagacctacatcttttatcagagacgacctttggtatggcatatttgctggcataaatccagagacatttgttagggcagatggtgcattcatccctttcacagatgattttgatatgacctctgctactacttctgttaagggcataggggaaattggagatgtcaaaattatagatttgcagtcgcctattactagtctcattggaaagcaagtgacgaaggtcggaagaagctctggattgactaccgggactgtcttggcatatgcccttgaatacaatgatgagaaggggatttgcttcttgactgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="39502" stop="36414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39202" g_stop="39058" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39057" i_stop="38247" i_length="811">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38246" g_stop="38006" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="386" r_length="241" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38005" i_stop="36967" i_length="1039">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36966" g_stop="36714" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="639" r_length="253" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E431115" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39202" e_stop="39058"/>
          <exon e_start="38246" e_stop="38006"/>
          <exon e_start="36966" e_stop="36714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAGGTAGTTTGATGTTTATCACAACTTTTCACTCTAAAGATGCTTTGATTGAGTTTTGATGAGTTCATAAGAGAGTTGAAGTCTAAGTCGAGTCCTAGAAAATGTATCAATCAATTTTCAAATCACGTAGGTTGGGCAAATTTATGGCAAGTATTGCTATTTTCATGAGTCTTGTTAGTAGATCGACTCTAAGCATCTTGCATAAAAGTTAAAACAACTATTTGGGTGTGGCAGATCCTTGGAGCCATCTGCTTCTTTGCTTCTGAGCACATTTTGTATTTTTCTGAAGTGCTTATCATTCAGTATCGGAACTGGATTTATGCTTACCATATTTTTCTGAAACTATGCAGCAAGGACAACTTATGTTAGTCTTATGTACTAAAAGGCATCTACTAATTTTGAAAAGGTTGGAAGAAATGGATGATGATTTCCTGTAATGTGTCTAAGAGCCCATAAACTTTATATGTGCACAAAGACACTTTTTAACACCTTTCTCCATTGTTTGGTTAGACTCACATCCTTTCTGAGTGAATTGGTTAGTCATCAAATCAGTTGAGTTCCTTTGAAATCTCCAGCAAAGGTTAAATACATTATAAGGGACTCGGGGAAAGGTTTTGTTTGTCAACAAGTTAGTTGAGCTTCTTTGTTGAGATCTCCAGTCGTTTTTAATTGCATCTTAGGAAGATAAACAATTAAAGAGTCTGCAGAAGAAATCAGATGTAAACTACTTGTTTGGCTTGTCATTTCTTTCTTCCCTAAGGTTATCACTCTGATCGTACATGTTAATTCACCACATTTTATTGGAAACATCTAGGTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAGGTTAAGTGTTTCTTCTTACCTTCTTTACTGATTTATGTTGGAAGGAAGAATGTTCTGATGCTACAAATCATTATTGAAATTCGCTAAATGAATAGTGGATTATGATGTCTCGCCTTGTGCTTTAGTAAATATGTCTTGTGATACTAATCCTTTCTCCATCATCAATTCATATCTATCATTTCTTGGATGGAAGAAGGTTATGTAAAAACTTTGAGATCTCACTAATCAGATTCCATTGTATTGATCCATAAGGTGTTGTATGAAATGAAATATAATCAAATGATAAAAATGAGGTTGTCTTGCTAATGGGGGACAAAGTTAACTGATACCTGTGCTGATGGGAGGTAGCAGGTATCCTGTGGGATTAGTCGAGGTGTGTGCAAGCTGGCCCGCACACCACCTGTTATAAAAGAATATGTTAGACAATGTCTCTTTTGTCCCGTGTGATTATATTTTCATCCTGCCACCACAACATATCATGGATTAAATCAATGTTATCAAAGGCGAAAAGCGCAAAAAAGCTCCAAGGTCCGTGGGGACTTTAAGCTCAAAGCACAAATAAAGCTTGGGCTTTAATTAAAAAAGGCGCAAAAGGAGAAAAAAAACAAATATATATGTTTAGTCCAAAACTAATAATTATAAACATTATGACAAATATATGACCAATGAATTGAAATTTTTTTAGTTATGAAGTGAATTATCAATTGTTTCGTGTCAATTCTTCATAAGAGGTTCATTGTCAAGAAAGTTTGTCTTAGAACCTTGACGACGATACTGAAGCGCATATAAAGCGAGGCGAAGCGCTCAACACATTTTGAGCCTCGCTTTGGGGCTTAAGCGCGCCTTTGATCTGCAAGTGCAACCCATGCTAGAAATCTTCATTTTTGTTTCTTTCTATGTTTTTAGATAGATGAAAAGTTATTCTTTGCGCACTTGCATGTTACCTGCTCTGCTCCTGAAGGTTCTTAATTTGTTAGAGTTATTATTTTTCTTATAGCATTGGTAAGATTTCTAAATGTGGAATTGATTACTCGTGCAGAGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTT</genome_strand>
        <mrna_strand>GGGTCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTTTCCTATTTTGGTGCACCAGAGCCGACGCCCACGGAGCGATTGTACACAGAGATAGTCGATGACCTGCGGGGTACTGACCCATATATTGGTTCAGGATCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGCCAGGAGACATATGGAACCTTGGGTGCTATTGTGAGGAGCCTGTCTCGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAGAAATGTTTCTTCCTTTACCTCCAACACTTGGACCTGAAGTATATCTGGGTTCAGTGGAGAGACCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATTTGTTAGGGCAGATGGTGCATTCATCCCTTTCACAGATGATTTTGATATGACCTCTGCTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAGTCGCCTATTACTAGTCTCATTGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACCGGGACTGTCTTGGCATATGCCCTTGAATACAATGATGAGAAGGGGATTTGCTTCTTGACTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463352" ref_strand="+" ref_description="SGN-E463352 [cPRO-14-K12]">
      <seq>gggtcctggaggtgtgtggtgtgaagtggatgtggtcgagttctcctattttggtgcaccagagccgacacccaaggagcagttgtacacagagatagtcgatgacctgcggggtagtgacccatatattggttcaggatctcaggtagcaagccaggagacatatggaaccttgggtgctattgtgaggagcctgtcaggcaatcgacaagttggtttcctaacaaaccggcatgttgctgttgacttagattacccaaatcaaaaaatgtttcatcctttacctccaacacttggacctggagtatatctgggttcagtggagagagctacatcttttatcagagacgacctttggtatggcatatttgctggcataaatccagagacatttgttagggcagatggtgcattcatccctttcacagatgattttgatatgacctctgttactactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="39502" stop="36595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39202" g_stop="39058" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39057" i_stop="38247" i_length="811">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38246" g_stop="38006" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="386" r_length="241" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38005" i_stop="36967" i_length="1039">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36966" g_stop="36895" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="458" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E463352" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39202" e_stop="39058"/>
          <exon e_start="38246" e_stop="38006"/>
          <exon e_start="36966" e_stop="36895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAGGTAGTTTGATGTTTATCACAACTTTTCACTCTAAAGATGCTTTGATTGAGTTTTGATGAGTTCATAAGAGAGTTGAAGTCTAAGTCGAGTCCTAGAAAATGTATCAATCAATTTTCAAATCACGTAGGTTGGGCAAATTTATGGCAAGTATTGCTATTTTCATGAGTCTTGTTAGTAGATCGACTCTAAGCATCTTGCATAAAAGTTAAAACAACTATTTGGGTGTGGCAGATCCTTGGAGCCATCTGCTTCTTTGCTTCTGAGCACATTTTGTATTTTTCTGAAGTGCTTATCATTCAGTATCGGAACTGGATTTATGCTTACCATATTTTTCTGAAACTATGCAGCAAGGACAACTTATGTTAGTCTTATGTACTAAAAGGCATCTACTAATTTTGAAAAGGTTGGAAGAAATGGATGATGATTTCCTGTAATGTGTCTAAGAGCCCATAAACTTTATATGTGCACAAAGACACTTTTTAACACCTTTCTCCATTGTTTGGTTAGACTCACATCCTTTCTGAGTGAATTGGTTAGTCATCAAATCAGTTGAGTTCCTTTGAAATCTCCAGCAAAGGTTAAATACATTATAAGGGACTCGGGGAAAGGTTTTGTTTGTCAACAAGTTAGTTGAGCTTCTTTGTTGAGATCTCCAGTCGTTTTTAATTGCATCTTAGGAAGATAAACAATTAAAGAGTCTGCAGAAGAAATCAGATGTAAACTACTTGTTTGGCTTGTCATTTCTTTCTTCCCTAAGGTTATCACTCTGATCGTACATGTTAATTCACCACATTTTATTGGAAACATCTAGGTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAGGTTAAGTGTTTCTTCTTACCTTCTTTACTGATTTATGTTGGAAGGAAGAATGTTCTGATGCTACAAATCATTATTGAAATTCGCTAAATGAATAGTGGATTATGATGTCTCGCCTTGTGCTTTAGTAAATATGTCTTGTGATACTAATCCTTTCTCCATCATCAATTCATATCTATCATTTCTTGGATGGAAGAAGGTTATGTAAAAACTTTGAGATCTCACTAATCAGATTCCATTGTATTGATCCATAAGGTGTTGTATGAAATGAAATATAATCAAATGATAAAAATGAGGTTGTCTTGCTAATGGGGGACAAAGTTAACTGATACCTGTGCTGATGGGAGGTAGCAGGTATCCTGTGGGATTAGTCGAGGTGTGTGCAAGCTGGCCCGCACACCACCTGTTATAAAAGAATATGTTAGACAATGTCTCTTTTGTCCCGTGTGATTATATTTTCATCCTGCCACCACAACATATCATGGATTAAATCAATGTTATCAAAGGCGAAAAGCGCAAAAAAGCTCCAAGGTCCGTGGGGACTTTAAGCTCAAAGCACAAATAAAGCTTGGGCTTTAATTAAAAAAGGCGCAAAAGGAGAAAAAAAACAAATATATATGTTTAGTCCAAAACTAATAATTATAAACATTATGACAAATATATGACCAATGAATTGAAATTTTTTTAGTTATGAAGTGAATTATCAATTGTTTCGTGTCAATTCTTCATAAGAGGTTCATTGTCAAGAAAGTTTGTCTTAGAACCTTGACGACGATACTGAAGCGCATATAAAGCGAGGCGAAGCGCTCAACACATTTTGAGCCTCGCTTTGGGGCTTAAGCGCGCCTTTGATCTGCAAGTGCAACCCATGCTAGAAATCTTCATTTTTGTTTCTTTCTATGTTTTTAGATAGATGAAAAGTTATTCTTTGCGCACTTGCATGTTACCTGCTCTGCTCCTGAAGGTTCTTAATTTGTTAGAGTTATTATTTTTCTTATAGCATTGGTAAGATTTCTAAATGTGGAATTGATTACTCGTGCAGAGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTT</genome_strand>
        <mrna_strand>GGGTCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCGACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGCCAGGAGACATATGGAACCTTGGGTGCTATTGTGAGGAGCCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACACTTGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATTTGTTAGGGCAGATGGTGCATTCATCCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341015" ref_strand="+" ref_description="SGN-E341015 [cTOF-5-D12]">
      <seq>acacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcggaaatcttcagaaaggggttttgccagaaactcttggccgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcatagcaaactcttgcgttgctacagtctcggtacagcaattggttttcgtattcgacgtggtgttttgactgatataccagcaatactagtgtttgtatcccggaaagttcacaaacaatggcttagtccaatccagtgtctacctactgctttagagggccctggaggtgtgtggtgtgaagtggatgtggtcgagttctcctattttggtgcaccagagccaacacccaaggagcagttgtacacagagatagtcgatgacctgcggggtagtgacccatatattggttcaggatctcaggtagcaagccaggagacatatggaaccttgggcgctattgtgaggagtctgtcaggcaatcgacaagttggtttcctaacaaaccggcatgttgctgttgacttagattacccaaatcaaaaaatgtttcatcctttacctccaacattaggacctggagtatantctgggttcagtggagagagctacatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="40185" stop="37753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39885" g_stop="39520" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39519" i_stop="39202" i_length="318">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39201" g_stop="39058" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="510" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39057" i_stop="38247" i_length="811">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38246" g_stop="38053" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="705" r_length="195" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E341015" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39885" e_stop="39520"/>
          <exon e_start="39201" e_stop="39058"/>
          <exon e_start="38246" e_stop="38053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAGGTGATCAAAAAGATGCCTAATTATCTCTTATCCTATTTCTGTCACCCTCTCGTGAAAGATTTTCCTGAATTAGGACAAAAAAAGATGACGAGACTTTACTTCCTTATAAAAACAAAAGAGGATGAAATTTACTTCATTGATTTTCTTTTATCTTCTCTTGCTGTATTCCTCCCCGTCACTTTTCCTGATAGGGATTGTTCAATTGTGTGAGTTTAACTATTATTAGAGCCCAAAGAATCAACACTTGCTAACAAATGTTATTCTTGCATCATTTATTCCTTAGTTTTCTCTATGCTTAAATATGTTACTTATCATCAGGGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAGGTAGTTTGATGTTTATCACAACTTTTCACTCTAAAGATGCTTTGATTGAGTTTTGATGAGTTCATAAGAGAGTTGAAGTCTAAGTCGAGTCCTAGAAAATGTATCAATCAATTTTCAAATCACGTAGGTTGGGCAAATTTATGGCAAGTATTGCTATTTTCATGAGTCTTGTTAGTAGATCGACTCTAAGCATCTTGCATAAAAGTTAAAACAACTATTTGGGTGTGGCAGATCCTTGGAGCCATCTGCTTCTTTGCTTCTGAGCACATTTTGTATTTTTCTGAAGTGCTTATCATTCAGTATCGGAACTGGATTTATGCTTACCATATTTTTCTGAAACTATGCAGCAAGGACAACTTATGTTAGTCTTATGTACTAAAAGGCATCTACTAATTTTGAAAAGGTTGGAAGAAATGGATGATGATTTCCTGTAATGTGTCTAAGAGCCCATAAACTTTATATGTGCACAAAGACACTTTTTAACACCTTTCTCCATTGTTTGGTTAGACTCACATCCTTTCTGAGTGAATTGGTTAGTCATCAAATCAGTTGAGTTCCTTTGAAATCTCCAGCAAAGGTTAAATACATTATAAGGGACTCGGGGAAAGGTTTTGTTTGTCAACAAGTTAGTTGAGCTTCTTTGTTGAGATCTCCAGTCGTTTTTAATTGCATCTTAGGAAGATAAACAATTAAAGAGTCTGCAGAAGAAATCAGATGTAAACTACTTGTTTGGCTTGTCATTTCTTTCTTCCCTAAGGTTATCACTCTGATCGTACATGTTAATTCACCACATTTTATTGGAAACATCTAGGTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATA-TCTGGGTTCAGTGGAGAGAGCTACATCTTT</genome_strand>
        <mrna_strand>ACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAG..............................................................................................................................................................................................................................................................................................................................GGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATANTCTGGGTTCAGTGGAGAGAGCTACATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572949" ref_strand="+" ref_description="SGN-E572949 [32183]">
      <seq>aaaatactgttgcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcgcgaatcttcagaaaggggttttgccagaaactcttggtcgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcatagcaaactcttgcgttgctacagtcttggtacagcaattggttttcgtattcgacgtggtgttttgactgatataccagcaatactagtgtttgtatcccggaaagttcacaaacaatggcttagtccaattcagtgtctacctactgctttaagggtcctggaggtgtgtggtgtgaagtggatgtggtcgagttctcctattttggtgcaccagaagccgacacccaaggagcagttgtacacagaagaatagtcgatgacctgcggggtagtgacccaacgataggttcaggatctcaggtacaagccaggagacatatggaacttgggtgctattgtgaggagcctgtcaggccaatccgacaagttggttctaacaaaccgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="40231" stop="37858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39931" g_stop="39520" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39519" i_stop="39202" i_length="318">
            <donor d_prob="0.926" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39201" g_stop="39058" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="558" r_length="147" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39057" i_stop="38247" i_length="811">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38246" g_stop="38161" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="642" r_length="84" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E572949" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39931" e_stop="39520"/>
          <exon e_start="39201" e_stop="39058"/>
          <exon e_start="38246" e_stop="38161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAGGTGATCAAAAAGATGCCTAATTATCTCTTATCCTATTTCTGTCACCCTCTCGTGAAAGATTTTCCTGAATTAGGACAAAAAAAGATGACGAGACTTTACTTCCTTATAAAAACAAAAGAGGATGAAATTTACTTCATTGATTTTCTTTTATCTTCTCTTGCTGTATTCCTCCCCGTCACTTTTCCTGATAGGGATTGTTCAATTGTGTGAGTTTAACTATTATTAGAGCCCAAAGAATCAACACTTGCTAACAAATGTTATTCTTGCATCATTTATTCCTTAGTTTTCTCTATGCTTAAATATGTTACTTATCATCAGGGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAG-AGCCAACACCCAAGGAGCAGTTGTACACAG-AG-ATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAGGTAGTTTGATGTTTATCACAACTTTTCACTCTAAAGATGCTTTGATTGAGTTTTGATGAGTTCATAAGAGAGTTGAAGTCTAAGTCGAGTCCTAGAAAATGTATCAATCAATTTTCAAATCACGTAGGTTGGGCAAATTTATGGCAAGTATTGCTATTTTCATGAGTCTTGTTAGTAGATCGACTCTAAGCATCTTGCATAAAAGTTAAAACAACTATTTGGGTGTGGCAGATCCTTGGAGCCATCTGCTTCTTTGCTTCTGAGCACATTTTGTATTTTTCTGAAGTGCTTATCATTCAGTATCGGAACTGGATTTATGCTTACCATATTTTTCTGAAACTATGCAGCAAGGACAACTTATGTTAGTCTTATGTACTAAAAGGCATCTACTAATTTTGAAAAGGTTGGAAGAAATGGATGATGATTTCCTGTAATGTGTCTAAGAGCCCATAAACTTTATATGTGCACAAAGACACTTTTTAACACCTTTCTCCATTGTTTGGTTAGACTCACATCCTTTCTGAGTGAATTGGTTAGTCATCAAATCAGTTGAGTTCCTTTGAAATCTCCAGCAAAGGTTAAATACATTATAAGGGACTCGGGGAAAGGTTTTGTTTGTCAACAAGTTAGTTGAGCTTCTTTGTTGAGATCTCCAGTCGTTTTTAATTGCATCTTAGGAAGATAAACAATTAAAGAGTCTGCAGAAGAAATCAGATGTAAACTACTTGTTTGGCTTGTCATTTCTTTCTTCCCTAAGGTTATCACTCTGATCGTACATGTTAATTCACCACATTTTATTGGAAACATCTAGGTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGG-CAAT-CGACAAGTTGGTTTCCTAACAAACCG</genome_strand>
        <mrna_strand>AAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGCGAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGTCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTTGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATTCAGTGTCTACCTACTGCTTTA-AG..............................................................................................................................................................................................................................................................................................................................GGTCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAAGCCGACACCCAAGGAGCAGTTGTACACAGAAGAATAGTCGATGACCTGCGGGGTAGTGACCCAACGATAGGTTCAGGATCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA-CAAGCCAGGAGACATATGGAA-CTTGGGTGCTATTGTGAGGAGCCTGTCAGGCCAATCCGACAAGTTGG-TT-CTAACAAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271798" ref_strand="+" ref_description="SGN-E271798 [cLEM-8-O23]">
      <seq>tgcatacttcttctggcctaatcgggtaaatgatgctgctggggagagagcaaactatttcggaaatcttcagaaaggggttttgccagaaactcttggccgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcatagcaaactcttgcgttgctacagtctcggtacagcctttggttttcgtattcgacgtggtgttttgactgatatatcagcaatactagtgtttgtatcccggaaagttcacaaacaatggcttagtccaatccagtgtctacctactgctttagagggccctggaggtgtgtggagtgaagaggatgtggacaacttctcctattgtggtgcaccagagccaacacccaaggagcaggtgtacacagagatagtcgatgacctgcggggtagtgacccatatattgggtcaagatctcaggtagcaagccaggagacatattgaaccttgggcgctattgtgaggagtctgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="40138" stop="37893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39838" g_stop="39520" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39519" i_stop="39202" i_length="318">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39201" g_stop="39058" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="463" r_length="144" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39057" i_stop="38247" i_length="811">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38246" g_stop="38193" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="517" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E271798" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39838" e_stop="39520"/>
          <exon e_start="39201" e_stop="39058"/>
          <exon e_start="38246" e_stop="38193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAGGTGATCAAAAAGATGCCTAATTATCTCTTATCCTATTTCTGTCACCCTCTCGTGAAAGATTTTCCTGAATTAGGACAAAAAAAGATGACGAGACTTTACTTCCTTATAAAAACAAAAGAGGATGAAATTTACTTCATTGATTTTCTTTTATCTTCTCTTGCTGTATTCCTCCCCGTCACTTTTCCTGATAGGGATTGTTCAATTGTGTGAGTTTAACTATTATTAGAGCCCAAAGAATCAACACTTGCTAACAAATGTTATTCTTGCATCATTTATTCCTTAGTTTTCTCTATGCTTAAATATGTTACTTATCATCAGGGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAGGTAGTTTGATGTTTATCACAACTTTTCACTCTAAAGATGCTTTGATTGAGTTTTGATGAGTTCATAAGAGAGTTGAAGTCTAAGTCGAGTCCTAGAAAATGTATCAATCAATTTTCAAATCACGTAGGTTGGGCAAATTTATGGCAAGTATTGCTATTTTCATGAGTCTTGTTAGTAGATCGACTCTAAGCATCTTGCATAAAAGTTAAAACAACTATTTGGGTGTGGCAGATCCTTGGAGCCATCTGCTTCTTTGCTTCTGAGCACATTTTGTATTTTTCTGAAGTGCTTATCATTCAGTATCGGAACTGGATTTATGCTTACCATATTTTTCTGAAACTATGCAGCAAGGACAACTTATGTTAGTCTTATGTACTAAAAGGCATCTACTAATTTTGAAAAGGTTGGAAGAAATGGATGATGATTTCCTGTAATGTGTCTAAGAGCCCATAAACTTTATATGTGCACAAAGACACTTTTTAACACCTTTCTCCATTGTTTGGTTAGACTCACATCCTTTCTGAGTGAATTGGTTAGTCATCAAATCAGTTGAGTTCCTTTGAAATCTCCAGCAAAGGTTAAATACATTATAAGGGACTCGGGGAAAGGTTTTGTTTGTCAACAAGTTAGTTGAGCTTCTTTGTTGAGATCTCCAGTCGTTTTTAATTGCATCTTAGGAAGATAAACAATTAAAGAGTCTGCAGAAGAAATCAGATGTAAACTACTTGTTTGGCTTGTCATTTCTTTCTTCCCTAAGGTTATCACTCTGATCGTACATGTTAATTCACCACATTTTATTGGAAACATCTAGGTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCA</genome_strand>
        <mrna_strand>TGCATACTTCTTCTGGCCTAATCGGGTAAATGATGCTGCTGGGGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCCTTTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATATCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAG..............................................................................................................................................................................................................................................................................................................................GGCCCTGGAGGTGTGTGGAGTGAAGAGGATGTGGACAACTTCTCCTATTGTGGTGCACCAGAGCCAACACCCAAGGAGCAGGTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGGTCAAGATCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGCCAGGAGACATATTGAACCTTGGGCGCTATTGTGAGGAGTCTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314799" ref_strand="+" ref_description="SGN-E314799 [cTOA-20-J7]">
      <seq>gcagtgaagagaaaaatataatactcttaacactggggcctctcatggcgtagcgtgggtttgactatgtttgcagccttttgttttcctttcccaatttcatatcgagtttaggctgcttgtgtgagaaatatggatcgagcaaggttaaataaaagaacccattgctcaggttcaacaccgtcagaggagtcagccttagatcttgaaaaatactgttgcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcggaaatcttcagaaaggggttttgccagaaactcttggccgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcatagcaaactcttgcgttgctacagtctcggtacagcaattggttttcgtattcgacgtggtgttttgactgatataccagcaatactagtgtttgtatcccggaaagttcacaaacnatggcttagtccaatccagtgtctacctactgctttaagggccctggaggtgtgtggtgtgaagtggatgtggtcgagttctcctattttggtgcaccagagccaacacccaaggagcagttgtacacagagatagtcgatgacctgcggggtagtgacccatatattggttcaggatctcaggtagcaagccaggagacatatggaaccttgggcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="41555" stop="37912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41255" g_stop="41128" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41127" i_stop="40013" i_length="1115">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40012" g_stop="39520" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="620" r_length="492" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39519" i_stop="39202" i_length="318">
            <donor d_prob="0.926" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39201" g_stop="39058" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="764" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39057" i_stop="38247" i_length="811">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38246" g_stop="38212" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="799" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E314799" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41255" e_stop="41128"/>
          <exon e_start="40012" e_stop="39520"/>
          <exon e_start="39201" e_stop="39058"/>
          <exon e_start="38246" e_stop="38212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGAAGAGAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAGGTAAAAAAACTCATCTTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACTAAAGGAAAAAAAAATCTTGCCATGTTTATCTGGTGCTATAACACATTTGATGGATCTAAATAGCTTTCAAATTGCTTACCATTCACTTTATACAGTCTATATTGTCATGACTTGTATTGGACTGGAACAATAAAGTTACTCAAGGCCAGCAGTGCTACAGTTTCTTTTTATCATTTGGATCTTTTCTACAGTCTTCCCTTTGGTGATGTTAACAATATTATATTCAGTGGATATGTGCGTTTTGGCTGTATGGATTTCCATTTTCATTTTTGAGACTGAGTTTACTGGATATTGTTAAATCTTTTAAATAACGTTGCAGCTTTAATTAAAGAAACATGTGAAACAAATTGGAATTTATGCTAAATTATTGCATTGGCCGTTCTCTGTGGTTCGAACACTGTTCTTCCTTTATCAGTTTTGACATAGATTACTAGAGCATACCTCTATGATAGCAAAGATCTTGTCCTTGAAAGTCAGACTTTAGGGTAAATTTTTGGTTTTCTTCCTGTTGGACTTTGAATAACAAGTTTGTCAACTATGAGCAGAAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAGGTGATCAAAAAGATGCCTAATTATCTCTTATCCTATTTCTGTCACCCTCTCGTGAAAGATTTTCCTGAATTAGGACAAAAAAAGATGACGAGACTTTACTTCCTTATAAAAACAAAAGAGGATGAAATTTACTTCATTGATTTTCTTTTATCTTCTCTTGCTGTATTCCTCCCCGTCACTTTTCCTGATAGGGATTGTTCAATTGTGTGAGTTTAACTATTATTAGAGCCCAAAGAATCAACACTTGCTAACAAATGTTATTCTTGCATCATTTATTCCTTAGTTTTCTCTATGCTTAAATATGTTACTTATCATCAGGGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAGGTAGTTTGATGTTTATCACAACTTTTCACTCTAAAGATGCTTTGATTGAGTTTTGATGAGTTCATAAGAGAGTTGAAGTCTAAGTCGAGTCCTAGAAAATGTATCAATCAATTTTCAAATCACGTAGGTTGGGCAAATTTATGGCAAGTATTGCTATTTTCATGAGTCTTGTTAGTAGATCGACTCTAAGCATCTTGCATAAAAGTTAAAACAACTATTTGGGTGTGGCAGATCCTTGGAGCCATCTGCTTCTTTGCTTCTGAGCACATTTTGTATTTTTCTGAAGTGCTTATCATTCAGTATCGGAACTGGATTTATGCTTACCATATTTTTCTGAAACTATGCAGCAAGGACAACTTATGTTAGTCTTATGTACTAAAAGGCATCTACTAATTTTGAAAAGGTTGGAAGAAATGGATGATGATTTCCTGTAATGTGTCTAAGAGCCCATAAACTTTATATGTGCACAAAGACACTTTTTAACACCTTTCTCCATTGTTTGGTTAGACTCACATCCTTTCTGAGTGAATTGGTTAGTCATCAAATCAGTTGAGTTCCTTTGAAATCTCCAGCAAAGGTTAAATACATTATAAGGGACTCGGGGAAAGGTTTTGTTTGTCAACAAGTTAGTTGAGCTTCTTTGTTGAGATCTCCAGTCGTTTTTAATTGCATCTTAGGAAGATAAACAATTAAAGAGTCTGCAGAAGAAATCAGATGTAAACTACTTGTTTGGCTTGTCATTTCTTTCTTCCCTAAGGTTATCACTCTGATCGTACATGTTAATTCACCACATTTTATTGGAAACATCTAGGTAGCAAGCCAGGAGACATATGGAACCTTGGGCGC</genome_strand>
        <mrna_strand>GCAGTGAAGAGAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACNATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTA-AG..............................................................................................................................................................................................................................................................................................................................GGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAGCCAGGAGACATATGGAACCTTGGGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299753" ref_strand="+" ref_description="SGN-E299753 [cLEW-1-L4]">
      <seq>gcttgtgtgagaaatatggatcgagcaaggttaaataaaagaacccattgctcaggttcaacaccgtcagaggagtcagccttagatcttgaaaaatactgttgcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcggaaatcttcagaaaggggttttgccagaaactcttggccgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcatagcaaactcttgcgttgctacagtctcggtacagcaattggttttcgtattcgacgtggtgttttgactgatataccagcaatactagtgtttgtatcccggaaagttcacaaacaatggcttagtccaatccagtgtctacctactgctttagagggccctggaggtgtgtggtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="40321" stop="38879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40012" g_stop="39520" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="504" r_length="493" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39519" i_stop="39202" i_length="318">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39201" g_stop="39179" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="527" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E299753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40012" e_stop="39520"/>
          <exon e_start="39201" e_stop="39179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAGGTGATCAAAAAGATGCCTAATTATCTCTTATCCTATTTCTGTCACCCTCTCGTGAAAGATTTTCCTGAATTAGGACAAAAAAAGATGACGAGACTTTACTTCCTTATAAAAACAAAAGAGGATGAAATTTACTTCATTGATTTTCTTTTATCTTCTCTTGCTGTATTCCTCCCCGTCACTTTTCCTGATAGGGATTGTTCAATTGTGTGAGTTTAACTATTATTAGAGCCCAAAGAATCAACACTTGCTAACAAATGTTATTCTTGCATCATTTATTCCTTAGTTTTCTCTATGCTTAAATATGTTACTTATCATCAGGGCCCTGGAGGTGTGTGGTGTGA</genome_strand>
        <mrna_strand>AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAG..............................................................................................................................................................................................................................................................................................................................GGCCCTGGAGGTGTGTGGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443117" ref_strand="+" ref_description="SGN-E443117 [cSTA-36-G18]">
      <seq>gaaaaatataatactcttaacactggggcctctcatggcgtagcgtgggtttgactatgtttgcagccttttgtttccctttcccaatttcatatcgagtttaggctgcctatgtgagaaatatggatcgagcaaggttaaataaaagaacccgttgctcaggttcaacaccgtcagaggagtcagccttagatcttgaaaaatactgttgcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcgcgaatcttcagaaaggggttttgccagaaactcttggtcgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcatagcaaactcttgcgttgctacagtcttggtacagcaattggttttcgtattcgacgtggtgttttgactgatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="41545" stop="39301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41245" g_stop="41128" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41127" i_stop="40013" i_length="1115">
            <donor d_prob="0.876" d_score="0.94"/>
            <acceptor a_prob="0.806" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40012" g_stop="39601" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="530" r_length="412" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E443117" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41245" e_stop="41128"/>
          <exon e_start="40012" e_stop="39601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAGGTAAAAAAACTCATCTTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACTAAAGGAAAAAAAAATCTTGCCATGTTTATCTGGTGCTATAACACATTTGATGGATCTAAATAGCTTTCAAATTGCTTACCATTCACTTTATACAGTCTATATTGTCATGACTTGTATTGGACTGGAACAATAAAGTTACTCAAGGCCAGCAGTGCTACAGTTTCTTTTTATCATTTGGATCTTTTCTACAGTCTTCCCTTTGGTGATGTTAACAATATTATATTCAGTGGATATGTGCGTTTTGGCTGTATGGATTTCCATTTTCATTTTTGAGACTGAGTTTACTGGATATTGTTAAATCTTTTAAATAACGTTGCAGCTTTAATTAAAGAAACATGTGAAACAAATTGGAATTTATGCTAAATTATTGCATTGGCCGTTCTCTGTGGTTCGAACACTGTTCTTCCTTTATCAGTTTTGACATAGATTACTAGAGCATACCTCTATGATAGCAAAGATCTTGTCCTTGAAAGTCAGACTTTAGGGTAAATTTTTGGTTTTCTTCCTGTTGGACTTTGAATAACAAGTTTGTCAACTATGAGCAGAAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATA</genome_strand>
        <mrna_strand>GAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTCCCTTTCCCAATTTCATATCGAGTTTAGGCTGCCTATGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCGTTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGCGAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGTCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTTGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480484" ref_strand="+" ref_description="SGN-E480484 [cSTD-14-G3]">
      <seq>tggatcgagcaaggttaaataaaagaacccgttgctcaggttcaacaccgtcagaggagtcagccttagatcttgaaaaatactgttgcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcgcgaatcttcagaaaggggttttgccagaaactcttggcccattgcccgaggggcagcgagcaacaaccttacttgacctcatgactattagggcctctcatagcaaactcttgcgttgctaccgtcttggtacagcaattgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="40307" stop="39333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40007" g_stop="39632" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E480484" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40007" e_stop="39632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTT</genome_strand>
        <mrna_strand>TGGATCGAGCAAGGTTAAATAAAAGAACCCGTTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGCGAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCCATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATTAGGGCCTCTCATAGCAAACTCTTGCGTTGCTACCGTCTTGGTACAGCAATTGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367010" ref_strand="+" ref_description="SGN-E367010 [cLPT-6-L5]">
      <seq>tcacactctccaatacctgcagtgaagagaaaaatataatactctcaacactggggcctctcatggcgtagcgtgggtttgactatgtttgcagccttttgttttcctttcccaatttcatatcgagtttaggctgcttatgtgagaaatatggatcgagcaaggttaaataaaagaacccgttgctcaggttcaacaccgtcagaggagtcagccttagatcttgaaaaatactgctgcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactgtgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcggaaatcttcagaaaggggttttgccagaaactcttggccgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcatagcaaactcttgcgttgctacagtctcggtacagcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="41573" stop="39336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41273" g_stop="41128" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41127" i_stop="40013" i_length="1115">
            <donor d_prob="0.876" d_score="0.98"/>
            <acceptor a_prob="0.806" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40012" g_stop="39636" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="523" r_length="377" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E367010" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41273" e_stop="41128"/>
          <exon e_start="40012" e_stop="39636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACTCTCCAATACCTGCAGTGAAGAGAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAGGTAAAAAAACTCATCTTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACTAAAGGAAAAAAAAATCTTGCCATGTTTATCTGGTGCTATAACACATTTGATGGATCTAAATAGCTTTCAAATTGCTTACCATTCACTTTATACAGTCTATATTGTCATGACTTGTATTGGACTGGAACAATAAAGTTACTCAAGGCCAGCAGTGCTACAGTTTCTTTTTATCATTTGGATCTTTTCTACAGTCTTCCCTTTGGTGATGTTAACAATATTATATTCAGTGGATATGTGCGTTTTGGCTGTATGGATTTCCATTTTCATTTTTGAGACTGAGTTTACTGGATATTGTTAAATCTTTTAAATAACGTTGCAGCTTTAATTAAAGAAACATGTGAAACAAATTGGAATTTATGCTAAATTATTGCATTGGCCGTTCTCTGTGGTTCGAACACTGTTCTTCCTTTATCAGTTTTGACATAGATTACTAGAGCATACCTCTATGATAGCAAAGATCTTGTCCTTGAAAGTCAGACTTTAGGGTAAATTTTTGGTTTTCTTCCTGTTGGACTTTGAATAACAAGTTTGTCAACTATGAGCAGAAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTG</genome_strand>
        <mrna_strand>TCACACTCTCCAATACCTGCAGTGAAGAGAAAAATATAATACTCTCAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTATGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCGTTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGCTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTGTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366003" ref_strand="+" ref_description="SGN-E366003 [cLPT-11-L9]">
      <seq>tcacactctccaatacctgcagtgaagagaaaaatattatactctcaacactggggcctctcatggcgtagcgtgggtttgactatgtttgcagccttttgttttcctttcccaatttcatatcgagtttaggctgcttatgtgagaaatatggatcgagcaaggttaaataaaagaacccgttgctcaggttcaacaccgtcagaggagtcagccttagatcttgaaaaatactgtcgcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactgtgagagtaatgctgcatacttctcctggcctactcggctaaatgatgctgctgaagagagagcaaactatttcggaaatcttcagaaaggggttttgccagaaactcttggccgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcatagcaaactcttgcgttgctacagtctcggtacagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="41573" stop="39338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41273" g_stop="41128" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41127" i_stop="40013" i_length="1115">
            <donor d_prob="0.876" d_score="0.98"/>
            <acceptor a_prob="0.806" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40012" g_stop="39638" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="521" r_length="375" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E366003" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41273" e_stop="41128"/>
          <exon e_start="40012" e_stop="39638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACTCTCCAATACCTGCAGTGAAGAGAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAGGTAAAAAAACTCATCTTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACTAAAGGAAAAAAAAATCTTGCCATGTTTATCTGGTGCTATAACACATTTGATGGATCTAAATAGCTTTCAAATTGCTTACCATTCACTTTATACAGTCTATATTGTCATGACTTGTATTGGACTGGAACAATAAAGTTACTCAAGGCCAGCAGTGCTACAGTTTCTTTTTATCATTTGGATCTTTTCTACAGTCTTCCCTTTGGTGATGTTAACAATATTATATTCAGTGGATATGTGCGTTTTGGCTGTATGGATTTCCATTTTCATTTTTGAGACTGAGTTTACTGGATATTGTTAAATCTTTTAAATAACGTTGCAGCTTTAATTAAAGAAACATGTGAAACAAATTGGAATTTATGCTAAATTATTGCATTGGCCGTTCTCTGTGGTTCGAACACTGTTCTTCCTTTATCAGTTTTGACATAGATTACTAGAGCATACCTCTATGATAGCAAAGATCTTGTCCTTGAAAGTCAGACTTTAGGGTAAATTTTTGGTTTTCTTCCTGTTGGACTTTGAATAACAAGTTTGTCAACTATGAGCAGAAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAAT</genome_strand>
        <mrna_strand>TCACACTCTCCAATACCTGCAGTGAAGAGAAAAATATTATACTCTCAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTATGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCGTTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTCGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTGTGAGAGTAATGCTGCATACTTCTCCTGGCCTACTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463513" ref_strand="+" ref_description="SGN-E463513 [cPRO-14-L8]">
      <seq>gaaatatggatcgagcaaggttaaataaaagaacccgttgctcaggttcaacaccgtcagaggagtcagccttagatcttgaaaaatactgtggcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagaagcaaactatttcgcgaatcttcagaaaggggttttgccagaaactcttggccgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataaaggcatctcatagcaaactcttgcgttgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="40313" stop="39355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40013" g_stop="39655" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E463513" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40013" e_stop="39655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTAC</genome_strand>
        <mrna_strand>GAAATATGGATCGAGCAAGGTTAAATAAAAGAACCCGTTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTGGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGA-AGCAAACTATTTCGCGAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAAGGCATCTCATAGCAAACTCTTGCGTTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418921" ref_strand="+" ref_description="SGN-E418921 [STM-28-J15]">
      <seq>gaaaaatataatactcttaacactggggcctctcatggcgtagcgtgggtttgactatgtttgcagccttttgtttccctttcccaatttcatatcgagtttaggctgcctatgtgagaaatatggatcgagcaaggttaaataaaagaacccgttgctcaggtgcaacaccgtcagaggagtcagccttagatcttgaaaaatactgttgcagttattctaatcttccttcacttagtccactaacacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcgcgaatcttcagaaaggggttttgccagaaactcttggtcgattgcccgaggggcagcgagcaacaaccttacttgacctcatgactataagggcatctcataacaaactcttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="41545" stop="39362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41245" g_stop="41128" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41127" i_stop="40013" i_length="1115">
            <donor d_prob="0.876" d_score="0.94"/>
            <acceptor a_prob="0.806" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40012" g_stop="39662" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="469" r_length="351" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E418921" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41245" e_stop="41128"/>
          <exon e_start="40012" e_stop="39662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAGGTAAAAAAACTCATCTTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACTAAAGGAAAAAAAAATCTTGCCATGTTTATCTGGTGCTATAACACATTTGATGGATCTAAATAGCTTTCAAATTGCTTACCATTCACTTTATACAGTCTATATTGTCATGACTTGTATTGGACTGGAACAATAAAGTTACTCAAGGCCAGCAGTGCTACAGTTTCTTTTTATCATTTGGATCTTTTCTACAGTCTTCCCTTTGGTGATGTTAACAATATTATATTCAGTGGATATGTGCGTTTTGGCTGTATGGATTTCCATTTTCATTTTTGAGACTGAGTTTACTGGATATTGTTAAATCTTTTAAATAACGTTGCAGCTTTAATTAAAGAAACATGTGAAACAAATTGGAATTTATGCTAAATTATTGCATTGGCCGTTCTCTGTGGTTCGAACACTGTTCTTCCTTTATCAGTTTTGACATAGATTACTAGAGCATACCTCTATGATAGCAAAGATCTTGTCCTTGAAAGTCAGACTTTAGGGTAAATTTTTGGTTTTCTTCCTGTTGGACTTTGAATAACAAGTTTGTCAACTATGAGCAGAAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCG</genome_strand>
        <mrna_strand>GAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTCCCTTTCCCAATTTCATATCGAGTTTAGGCTGCCTATGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCGTTGCTCAGGTGCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACTAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGCGAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGTCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAACAAACTCTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438536" ref_strand="+" ref_description="SGN-E438536 [cSTA-8-H21]">
      <seq>ccaatacttgtagtgaagagaaaaatataatactcttaacactggggcctctcatggcgtagcgtgggtttgactatgtttgcagccttttgttttcctttcccaatttcatatcgagtttaggctgcctatgtgagaaatatggatcgagcaaggttaaataaaagaacccgttgctcaggttcaacaccgtcagaggagtcagccttagatcttgaaaaatactgtggcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcgcgaatcttcagaaaggggttttgccagaaactcttggccgattgcccgaggggcagcgagcaacaaccttacttgacctcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="41564" stop="39392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41264" g_stop="41128" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41127" i_stop="40013" i_length="1115">
            <donor d_prob="0.876" d_score="0.96"/>
            <acceptor a_prob="0.806" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40012" g_stop="39692" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="458" r_length="321" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E438536" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41264" e_stop="41128"/>
          <exon e_start="40012" e_stop="39692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATACCTGCAGTGAAGAGAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAGGTAAAAAAACTCATCTTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACTAAAGGAAAAAAAAATCTTGCCATGTTTATCTGGTGCTATAACACATTTGATGGATCTAAATAGCTTTCAAATTGCTTACCATTCACTTTATACAGTCTATATTGTCATGACTTGTATTGGACTGGAACAATAAAGTTACTCAAGGCCAGCAGTGCTACAGTTTCTTTTTATCATTTGGATCTTTTCTACAGTCTTCCCTTTGGTGATGTTAACAATATTATATTCAGTGGATATGTGCGTTTTGGCTGTATGGATTTCCATTTTCATTTTTGAGACTGAGTTTACTGGATATTGTTAAATCTTTTAAATAACGTTGCAGCTTTAATTAAAGAAACATGTGAAACAAATTGGAATTTATGCTAAATTATTGCATTGGCCGTTCTCTGTGGTTCGAACACTGTTCTTCCTTTATCAGTTTTGACATAGATTACTAGAGCATACCTCTATGATAGCAAAGATCTTGTCCTTGAAAGTCAGACTTTAGGGTAAATTTTTGGTTTTCTTCCTGTTGGACTTTGAATAACAAGTTTGTCAACTATGAGCAGAAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGAC</genome_strand>
        <mrna_strand>CCAATACTTGTAGTGAAGAGAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCCTATGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCGTTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTGGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGCGAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444159" ref_strand="+" ref_description="SGN-E444159 [cSTA-41-J10]">
      <seq>gaaaaatataatacctcttaaccacctggggcctctcatggcgtaccgtgggtttgactatgtttgccagccttttgtttccctttcccaatttcatatcgagtttaggctgcctatgtgagaaatatggatccgagccagggtaaataaaagaacccgttgctcaggttcaaccaccgtcagaggagtcagccttagatcttgaaaaatactgttgcagttattctaatcttccttcacttagtccaccaaccacttcaaccttatgcatcggctggaccaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagccaactatttcgcgaatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="41545" stop="39468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41245" g_stop="41128" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41127" i_stop="40013" i_length="1115">
            <donor d_prob="0.876" d_score="0.94"/>
            <acceptor a_prob="0.806" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40012" g_stop="39768" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="371" r_length="249" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E444159" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41245" e_stop="41128"/>
          <exon e_start="40012" e_stop="39768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATATAATA-CTCTTAA-CA-CTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTG-CAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAGGTAAAAAAACTCATCTTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACTAAAGGAAAAAAAAATCTTGCCATGTTTATCTGGTGCTATAACACATTTGATGGATCTAAATAGCTTTCAAATTGCTTACCATTCACTTTATACAGTCTATATTGTCATGACTTGTATTGGACTGGAACAATAAAGTTACTCAAGGCCAGCAGTGCTACAGTTTCTTTTTATCATTTGGATCTTTTCTACAGTCTTCCCTTTGGTGATGTTAACAATATTATATTCAGTGGATATGTGCGTTTTGGCTGTATGGATTTCCATTTTCATTTTTGAGACTGAGTTTACTGGATATTGTTAAATCTTTTAAATAACGTTGCAGCTTTAATTAAAGAAACATGTGAAACAAATTGGAATTTATGCTAAATTATTGCATTGGCCGTTCTCTGTGGTTCGAACACTGTTCTTCCTTTATCAGTTTTGACATAGATTACTAGAGCATACCTCTATGATAGCAAAGATCTTGTCCTTGAAAGTCAGACTTTAGGGTAAATTTTTGGTTTTCTTCCTGTTGGACTTTGAATAACAAGTTTGTCAACTATGAGCAGAAATATGGAT-CGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAA-CACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAA-CACTTCAACCTTATGCATCGGCTGGA-CAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTC</genome_strand>
        <mrna_strand>GAAAAATATAATACCTCTTAACCACCTGGGGCCTCTCATGGCGTACCGTGGGTTTGACTATGTTTGCCAGCCTTTTGTTTCCCTTTCCCAATTTCATATCGAGTTTAGGCTGCCTATGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGGATCCGAGCCAGGGTAAATAAAAGAACCCGTTGCTCAGGTTCAACCACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACCACTTCAACCTTATGCATCGGCTGGACCAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCCAACTATTTCGCGAATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338341" ref_strand="+" ref_description="SGN-E338341 [cTOE-13-D14]">
      <seq>tagcgtgggtttgactatgtttgcagccttttgttttcctttcccaatttcatatcgagtttaggctgcttgtgtgagaaatatggatcgagcaaggttaaataaaagaacccattgctcaggttcaacaccgtcagaggagtcagccttagatcttgaaaaatactgttgcagttattctaatcttccttcacttagtccaccaacacttcaaccttatgcatcggctggacaacactctgagagtaatgctgcatacttctcctggcctagtcggctaaatgatgctgctgaagagagagcaaactatttcggaaatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="41505" stop="39468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41205" g_stop="41128" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41127" i_stop="40013" i_length="1115">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40012" g_stop="39768" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="323" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E338341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41205" e_stop="41128"/>
          <exon e_start="40012" e_stop="39768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAGGTAAAAAAACTCATCTTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACTAAAGGAAAAAAAAATCTTGCCATGTTTATCTGGTGCTATAACACATTTGATGGATCTAAATAGCTTTCAAATTGCTTACCATTCACTTTATACAGTCTATATTGTCATGACTTGTATTGGACTGGAACAATAAAGTTACTCAAGGCCAGCAGTGCTACAGTTTCTTTTTATCATTTGGATCTTTTCTACAGTCTTCCCTTTGGTGATGTTAACAATATTATATTCAGTGGATATGTGCGTTTTGGCTGTATGGATTTCCATTTTCATTTTTGAGACTGAGTTTACTGGATATTGTTAAATCTTTTAAATAACGTTGCAGCTTTAATTAAAGAAACATGTGAAACAAATTGGAATTTATGCTAAATTATTGCATTGGCCGTTCTCTGTGGTTCGAACACTGTTCTTCCTTTATCAGTTTTGACATAGATTACTAGAGCATACCTCTATGATAGCAAAGATCTTGTCCTTGAAAGTCAGACTTTAGGGTAAATTTTTGGTTTTCTTCCTGTTGGACTTTGAATAACAAGTTTGTCAACTATGAGCAGAAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTC</genome_strand>
        <mrna_strand>TAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325723" ref_strand="+" ref_description="SGN-E325723 [cTOC-15-J21]">
      <seq>ttttttttcctctcgaagaatccatcactattgcgattgatcttccttttttcactttctcttcttcatgcagagatatcttcacacgcccatgttttttttttgaattttccaggaccccattaattttgttccctcaatttgtactgtgcacaatcgttatcaaaataagtgctttttcaatattactgtatttattatccgtttttcctctcaagtgtttcttttcacttttcctgttcctggatttgatgcttttccttggttatatatgtgtggctgagaactttttgtttttatttccgttgttggagaaatacgatatattggacctcacctagtttgggattgaagcatagttattgacatattgctgattgattatggctgttgttgaacttattatctatttctgttgagaaagatacctgttttcttagggccatgttgattgttgaggcagacctatcatcttatgaaggtcattctttcagattttaaagtagctgatagaaatgatgtgatggataatattgttgtaagctgtggctaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="41412" stop="40258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41112" g_stop="40558" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E325723" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41112" e_stop="40558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACT</genome_strand>
        <mrna_strand>TTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGATTTGATGCTTTTCCTTGGTTATATATGTGTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATACGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGCTGATTGATTATGGCTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGACCTATCATCTTATGAAGGTCATTCTTTCAGATTTTAAAGTAGCTGATAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328251" ref_strand="+" ref_description="SGN-E328251 [cTOC-21-H23]">
      <seq>tttccatctctgcaatattcatcttctctatatcatattttagtttttttttaattaatgaaaccaagaaggaaggaagaaattaagagaagatgaagaagctgaatttgttattgaggaagtgtaagactttgtcaaggcaactaggaagaagctcatcttatagtagtttaaggtcaaaatctgcaagagaagatttttggaatgtggaagataatatggaagattttgagacaattcttgttggcaactcaagaaggaaatatgtcataaaatcaaaatacttgagccatccactattgaatgctctaatagagaaatcaaagcaaaagcatggggaaaaagatcatctttccgttaagtgtgaagttgtgctttttgatcatcttctctgggtacttgaaaatgctgatcctatcaaccttaattctgattcatttgaggaattggctgatctatatgctgtttaatgtgaataattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="42917" stop="41836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42617" g_stop="42136" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E328251" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42617" e_stop="42136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATCTCTGCAATATTCATCTTCTCTATATCATATTTAAGTTTTTTTTTAATTAATGAAACCAAGAAGGAAGGAAGAAATTAAGAGAAGATGAAGAAGCTGAATTTGTTATTGAGGAAGTGTAAGACTTTGTCAAGGCAACTAGGAAGAAGCTCATCTTATAGTAGTTTAAGGTCAAAATCTGCAAGAGAAGATTTTTGGAATGTGGAAGATAATATGGAAGATTTTGAGACAATTCTTGTTGGCAACTCAAGAAGGAAATATGTCATAAAATCAAAATACTTGAGCCATCCACTATTGAATGCTCTAATAGAGAAATCAAAGCAAAAGCATGGGGAAAAAGATCATCTTTCCGTTAAGTGTGAAGTTGTGCTTTTTGATCATCTTCTCTGGTTACTTGAAAATGCTGATCCTATCAACCTTAATTCTGATTCATTTGAGGAATTGGCTGATCTATATGTTGTTTAATGTGAATAATTT</genome_strand>
        <mrna_strand>TTTCCATCTCTGCAATATTCATCTTCTCTATATCATATTTTAGTTTTTTTTTAATTAATGAAACCAAGAAGGAAGGAAGAAATTAAGAGAAGATGAAGAAGCTGAATTTGTTATTGAGGAAGTGTAAGACTTTGTCAAGGCAACTAGGAAGAAGCTCATCTTATAGTAGTTTAAGGTCAAAATCTGCAAGAGAAGATTTTTGGAATGTGGAAGATAATATGGAAGATTTTGAGACAATTCTTGTTGGCAACTCAAGAAGGAAATATGTCATAAAATCAAAATACTTGAGCCATCCACTATTGAATGCTCTAATAGAGAAATCAAAGCAAAAGCATGGGGAAAAAGATCATCTTTCCGTTAAGTGTGAAGTTGTGCTTTTTGATCATCTTCTCTGGGTACTTGAAAATGCTGATCCTATCAACCTTAATTCTGATTCATTTGAGGAATTGGCTGATCTATATGCTGTTTAATGTGAATAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377353" ref_strand="+" ref_description="SGN-E377353 [TUS-21-I2](-)">
      <seq>ggtgcttctatgtgagcactaagtctactgacccgtgcaacaagagaatagatcaagctggttacaggatttatctgtgtatgcagttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtgaaggagatttcacgaatttttatgttgtgttcacggttgtttgaaccattcagatttctgagacagcagattttgctacaagaggtttaatggtgaagcatataatttatgagctagccaggtttgtgaattttaaggcactgcaactggtgctgatgagatagatttatggttttcactcagctgctacaaatctcaatttttggctcgtcatgtaacattcaatgtccataggtcattcgactttgtgtaatattattgtaattctttcactccttatcaccctccccaatacgccttagttggcttctgcaatatgatttttgcaataaacggaaagaagaagattcaaaagtagaacttttgtcagtttgatgagttctgaattgtccaaacagtccgcattcatataattctatagcttgaaagcttagctgcataaatttctcattgctcatttttcttgttgatttcatttgtgtgagagcataaataaatagatcttggaagcttgaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="44880" stop="43579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44580" g_stop="43880" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E377353" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44580" e_stop="43880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAAATTTCTCATTGCTCATTTTTCTTGTTGATTTCATTTGTGTGAGAGCATAAATAAATAGATCTTGGAAGCTTGACCAAACAAGGATA</genome_strand>
        <mrna_strand>GGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGC-AACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAAATTTCTCATTGCTCATTTTTCTTGTTGATTTCATTTGTGTGAGAGCATAAATAAATAGATCTTGGAAGCTTGACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375023" ref_strand="+" ref_description="SGN-E375023 [TUS-36-K15](-)">
      <seq>gacccgtgcaaacaagagaatagatcaagctggttacaggatttatctgtgtatgcagttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtgaaggagatttcacgaatttttatgttgtgttcacggttgtttgaaccattcagatttctgagacagcagattttgctacaagaggtttaatggtgaagcatataatttatgagctagccaggtttgtgaattttaaggcactgcaactggtgctgatgagatagatttatggttttcactcagctgctacaaatctcaatttttggctcgtcatgtaacattcaatgtccataggtcattcgactttgtgtaatattattgtaattctttcactccttatcaccctccccaatacgccttagttggcttctgcaatatgatttttgcaataaacggaaagaagaagattcaaaagtagaacttttgtcagtttgatgagttctgaattgtccaaacagtccgcattcatataattctatagcttgaaagcttagctgcataaatttctcattgctcatttttcttgttgatttcatttgtgtgagagcataaataaatagatcttggaagcttgaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="44851" stop="43579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44551" g_stop="43880" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E375023" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44551" e_stop="43880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAAATTTCTCATTGCTCATTTTTCTTGTTGATTTCATTTGTGTGAGAGCATAAATAAATAGATCTTGGAAGCTTGACCAAACAAGGATA</genome_strand>
        <mrna_strand>GACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAAATTTCTCATTGCTCATTTTTCTTGTTGATTTCATTTGTGTGAGAGCATAAATAAATAGATCTTGGAAGCTTGACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377532" ref_strand="+" ref_description="SGN-E377532 [TUS-20-D1](-)">
      <seq>atagatcaagctggttacaggatttatctgtgtatgcagttgaggtaagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtgaaggagatttcacgaatttttatgttgtgttcacggttgtttgaaccattcagatttctgagacagcagattttgctacaagaggtttaatggtgaagcatataatttatgagctagccaggtttgtgaattttaaggcactgcaactggtgctgatgagatagatttatggttttcactcagctgctacaaatctcaatttttggctcgtcatgtaacattcaatgtccataggtcattcgactttgtgtaatattattgtaattctttcactccttatcaccctccccaatacgccttagttggcttctgcaatatgatttttgcaataaacggaaagaagaagattcaaaagtagaacttttgtcagtttgatgagttctgaattgtccaaacagtccgcattcatataattctatagcttgaaagcttagctgcataaatttctcattgctcatttttcttgttgatttcatttgtgtgagagcataaataaatagatcttggaagcttgaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="44832" stop="43579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44532" g_stop="43880" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E377532" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44532" e_stop="43880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAAATTTCTCATTGCTCATTTTTCTTGTTGATTTCATTTGTGTGAGAGCATAAATAAATAGATCTTGGAAGCTTGACCAAACAAGGATA</genome_strand>
        <mrna_strand>ATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTAAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAAATTTCTCATTGCTCATTTTTCTTGTTGATTTCATTTGTGTGAGAGCATAAATAAATAGATCTTGGAAGCTTGACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232130" ref_strand="+" ref_description="SGN-E232130 [cLEL-5-A5](-)">
      <seq>agcatataatttatgagctagccaggtttgtgaattttaaggcactgcaactggtgctgatgagatagatttatggttttcactcagctgctacaaatctcaatttttggctcgtcatgtaacattcaatgtccataggtcattcgactttgtgtaatattattgtaattctttcactccttatcaccctccccaatacgccttagttggcttctgcaatatgatttttgcaataaacggaaagaagaagattcaaaagtagaacttttgtcagtttgatgagttctgaattgtccaaacagtccgcatacatataattctatagcttgaaagcttagctacataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="44611" stop="43665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44311" g_stop="43966" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="347" polyA_stop="362"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E232130" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44311" e_stop="43966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAA</genome_strand>
        <mrna_strand>AGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATACATATAATTCTATAGCTTGAAAGCTTAGCTACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232630" ref_strand="+" ref_description="SGN-E232630 [cLEL-5-A5](-)">
      <seq>agcatataatttatgagctagccaggtttgtgaattttaaggcactgcaactggtgctgatgagatagatttatggttttcactcagctgctacaaatctcaatttttggctcgtcatgtaacattcaatgtccataggtcattcgactttgtgtaatattattgtaattctttcactccttatcaccctccccaatacgccttagttggcttctgcaatatgatttttgcaataaacggaaagaagaagattcaaaagtagaacttttgtcagtttgatgagttctgaattgtccaaacagtccgcattcatataattctatagcttgaaagcttagctgcataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="44611" stop="43665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44311" g_stop="43966" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="347" polyA_stop="362"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E232630" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44311" e_stop="43966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAA</genome_strand>
        <mrna_strand>AGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746562" ref_strand="+" ref_description="SGN-E746562 [GI|47104188]">
      <seq>tttgtttcattttcccaaatttttgggctcaaatacaattttggtgcaattatttgggtaattttctaatttacatgtagcgtcgtcgctgagttaaacccgagaaatatttgtagttgtagcacggcgatagatagccgcaacgctgtgtgtaccactcaataagcacttcaacttgctagtggtaaaatggcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgcatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcggcaagtccacgctgttcaacgccgtcgttgagaatggaaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagtcgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcggtcccggcttcgatagagtttgttgatattgctggacttgtaaagggagccagtcaaggggagggcctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaaggaggaagcagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatgaaagtggccttggaaatctcatcagagaaacttatggtctcctagggttgcgtacatacttcacttctggcgagaaggaaaccaaagcatggaccatcctcacaggaatgactgctcctcaagcagctggggttattcactccgactttgaaaagggcttcatcagggcagagacggttgcttacgatgactttgtttctgctggttcttttgcagctgcaagggagaaaggactgttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtgaaggagatttcacgaatttttatgttgtgttcacggttgtttgaaccattcagatttctgagacagcagattttgctacaagaggtttaatggtgaagcatataatttatgagctagccaggtttgtgaattttaaggcactgcaactggtgctgatgagatagatttatggttttcactcagctgctacaaatctcaatttttggctcgtcatgtaacattcaatgtccataggtcattcgactttgtgtaatattattgtaattctttcactccttatcaccctccccaatacgccttagttggcttctgcaatatgatttttgcaataaacggaaagaagaagattcaaaagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="52709" stop="43748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52409" g_stop="51999" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51998" i_stop="51014" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51013" g_stop="50825" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="600" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50824" i_stop="50699" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50698" g_stop="50645" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="654" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49337" g_stop="49227" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="765" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49226" i_stop="48851" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48850" g_stop="48788" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="828" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48787" i_stop="48640" i_length="148">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48639" g_stop="48385" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="1083" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48384" i_stop="47884" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47883" g_stop="47737" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1084" r_stop="1230" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47736" i_stop="47632" i_length="105">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47631" g_stop="47604" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1231" r_stop="1258" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="47603" i_stop="46709" i_length="895">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="46708" g_stop="46638" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1259" r_stop="1329" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="46637" i_stop="45385" i_length="1253">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="45384" g_stop="45325" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1330" r_stop="1389" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="45324" i_stop="44494" i_length="831">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="44493" g_stop="44054" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1390" r_stop="1829" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1832" polyA_stop="1846"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E746562" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1829</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52409" e_stop="51999"/>
          <exon e_start="51013" e_stop="50825"/>
          <exon e_start="50698" e_stop="50645"/>
          <exon e_start="49337" e_stop="49227"/>
          <exon e_start="48850" e_stop="48788"/>
          <exon e_start="48639" e_stop="48385"/>
          <exon e_start="47883" e_stop="47737"/>
          <exon e_start="47631" e_stop="47604"/>
          <exon e_start="46708" e_stop="46638"/>
          <exon e_start="45384" e_stop="45325"/>
          <exon e_start="44493" e_stop="44054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTACATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAGGTGAAACAAATAAAAGAGCTTTAGTGATATTTGACTGTCGGCGTAGTTTTCGCCTTTGGGTACTGTAGTGTATGAGTATTGAGTTTATCATTGGTTAACTTGCAGGAAACCAAAGCATGGACCATCCTCACAGGTTTGCACTATGGTTTCTCTATTTCAATCTTTTCTTAAAGTGAAAAATAAGCAGTTCTGGTCCCTCTTATAGTATTTTCCAATATTGGTACTTTTTTATCTGGCTAAGCACATAAAACCTCCACTTTTCCTGTTTTTGCTCTTTTAATTCTATTGTTAATGGCACTTCTACAAGTTAATGGAATCTATTTTGTTTCCTTGTCTTCAGTAGCTTTACTTAAATGGCAACTTAGCTTTTCCTATTAAATACCTGTGTCTTTTCCTCTGATTAAAATATTTACTTTTAATCATTTAAAAGGTGGGAAAAGGGAAAGCGCAAAAAAGTCATATTCTTCATGCTCATGCTTGTTGTTTTCTATCCCTCCTCTCACATTGTCTCTACAAGGCTCATTCATTCAACCAGCAGCCTTCTCACTTATTCTCCTTCTCCAGGCTGCTGCCTTTTCTCTCGTTTGACAGCTCCTGCAAACAACCATATGCAGCACTTTTTTCCTCTTCCAAGCTCCTCCACATGAAAGTTCTTCTTCTCCCTACTTCATTTTCTTTTTCTGATGCTGGACTCTTCCTTGTTGTGGGTCAATTTTCTCGAGAAAAACATTCTGGATGGTTGTTTAGGTCAATTTTAAGAATAACAATAAGTTTTATGTGCTTAAAAAATAGAGAGACTAAATTTGGAATTTGCAAAAGAGGGACTAAAACTGTTCTCTAAAAATTTCCTTTACAGGGAACTATAACTGAGTCTCTTGAGCTTCTAGAAAAGAATGATAATTCTTTTGTATTTTGCTAAGACTGGGTACAGATTTCACTATTTGATAGGCTCTTGACTGACCATGTGGTATCTATCCCTTCACATCCTTTATCCTGAAAATGTTTGTCTAACCATTATGATTATATAGGAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACGGTGAGTATCATGTAAAAATAGGGCAAGAAACAGTAAACTATGCTTTGGTTACTCCCAAGAATTTCAGCATGTACATTGTTTTTGTTTTAGAGGACTACCATATACTCAATATTTCTGATAAAATTTAGTAGGCATGCATATATATCCTAAACATCGTGAAGGTAATGATTGAGAGCTTAGAGCTTCATATTGGTTAGATCATAGATGATGAAGATATGCTGACAGTGGTGAAACTTTGTACTTATGAATACAAATTGATGTGATTGATTTATTAGTGGTTTGTCACCTTAGATGGATAGAGCATGTCAAAGCAAGTTTTCACATAAATGGTGGAGTTTGATCAAACTATTTTGTTATGTGATATGTGATTATCAGTGACTATGAAGAATTGAGTCTATTTTTCGGCTGGAAATGTAAAATTTACTTACATGGTTATAACTTGTAATCATGAGTCTGCATTTACCCGTTTTACCAGACATAGATATTCTGTTTAAATGTTATTTTGGTGCTGCTAGGTTTGTTTGTGCATAAAATAATAACTAAGAGATGTTCAAATAGTAGCTTTTGATAGGGTGGATGTTAGCTCAACTAACAACAAATATGAGCGAATCCAAACTAACTAGGCTGCTCACATGAATCCTCAGCATCCAGTTAGCTTCATTCAGACAAGTAGTAGTGGATATTTTAATCCTTAATAGGATGGATCTTAGATCAGTTGATTTAGGATTGGTTTGTTTGGTTGTAAATTTGAAGGTTAGATCCATTATGTTGCCCCTTTTATGCTTAATAGTGTGGTTGTATTTTGTCTTTCATTTCAAGTAGCCCAGAAACTCACCACACTGATTATGTGGAACTAATAGAACTGTCTTATGGGTGCTTGGAGTTATTTTGCTCATGGAAGAAAGCTTAACTTGCCACAAACTGGATGTTGGAAACATTTCAGCTTAGTTGACCATCCCCATCCAGCCTCATATGCACATCCAAGACTGGATGATCTTGTTGTGAAGTGTGAACAGACTCAACCATGGCTAACATGGAACTATAGTAGTTATCCTTCGTTATTTTTAGGAGAAATGAGCCTTAGAAATAAACATATTCAATGATTTGTCATCTAGGTGTGTTCTTATTGTCTTGTATGTTATTAGCAGAGTGTTTTTTCACTATAAGTTTTTGAATGGTCTTTCCCTTTACCCTTTAATAAAAAAACTTTTTTTAATGTTTTTAAATGGTTTGTCGACTTCACTTCTTTGCAGGTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTGGTAAGTTGGCACTTTCTGATCATTTATGGTTCTTGATACTGTTACTTCTGTATTTTTGACCTCAGATGTTGGGAACTGTGTAAAATGTCTTTGTAGTATTTGATTGAGACTGTAAAGCAGTATATAACCCATTGATAGTCTACCTGACCAAGTGTATGATTGAAATTTGAAAACTAGCTTTCTTTTCAATTTCAGATATATCTGAACCTAAATAGGGTATTCCCCCATGGGCCAAAGGTACCCTCAGATATTCCTTGGCTACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAA</genome_strand>
        <mrna_strand>TTTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTACATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG....................................................................................................................................................GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG.........................................................................................................GAAACCAAAGCATGGACCATCCTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214117" ref_strand="+" ref_description="SGN-E214117 [cLEC-80-O24]">
      <seq>aaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatgaaagtggccttggaaatctcatcagagaaacttatggtctcctagggttgcgtacatacttcacttctggcgagaaggaaaccaaagcatggaccatcctcacaggaatgactgctcctcaagcagctggggttattcactccgactttgaaaagggcttcatcagggcagagacggttgcttacgatgactttgtttctgctggttcttttgcagctgcaagggagaaaggactgttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtgaaggagatttcacgaatttttatgttgtgttcacggttgtttgaaccattcagatttctgagacagcagattttgctacaagaggtttaatggtgaagcatataatttatgagctagccaggtttgtgaattttaaggcactgcaactggtgctgatgagatagatttatggttttcactcagctgctacaaatctcaatttttggctcgtcatgtaacattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="48850" stop="43884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48550" g_stop="48385" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48384" i_stop="47884" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47883" g_stop="47737" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="313" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47736" i_stop="47632" i_length="105">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47631" g_stop="47604" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="341" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47603" i_stop="46709" i_length="895">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46708" g_stop="46638" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="412" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46637" i_stop="45385" i_length="1253">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45384" g_stop="45325" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="472" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45324" i_stop="44494" i_length="831">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44493" g_stop="44184" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="782" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E214117" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48550" e_stop="48385"/>
          <exon e_start="47883" e_stop="47737"/>
          <exon e_start="47631" e_stop="47604"/>
          <exon e_start="46708" e_stop="46638"/>
          <exon e_start="45384" e_stop="45325"/>
          <exon e_start="44493" e_stop="44184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAGGTGAAACAAATAAAAGAGCTTTAGTGATATTTGACTGTCGGCGTAGTTTTCGCCTTTGGGTACTGTAGTGTATGAGTATTGAGTTTATCATTGGTTAACTTGCAGGAAACCAAAGCATGGACCATCCTCACAGGTTTGCACTATGGTTTCTCTATTTCAATCTTTTCTTAAAGTGAAAAATAAGCAGTTCTGGTCCCTCTTATAGTATTTTCCAATATTGGTACTTTTTTATCTGGCTAAGCACATAAAACCTCCACTTTTCCTGTTTTTGCTCTTTTAATTCTATTGTTAATGGCACTTCTACAAGTTAATGGAATCTATTTTGTTTCCTTGTCTTCAGTAGCTTTACTTAAATGGCAACTTAGCTTTTCCTATTAAATACCTGTGTCTTTTCCTCTGATTAAAATATTTACTTTTAATCATTTAAAAGGTGGGAAAAGGGAAAGCGCAAAAAAGTCATATTCTTCATGCTCATGCTTGTTGTTTTCTATCCCTCCTCTCACATTGTCTCTACAAGGCTCATTCATTCAACCAGCAGCCTTCTCACTTATTCTCCTTCTCCAGGCTGCTGCCTTTTCTCTCGTTTGACAGCTCCTGCAAACAACCATATGCAGCACTTTTTTCCTCTTCCAAGCTCCTCCACATGAAAGTTCTTCTTCTCCCTACTTCATTTTCTTTTTCTGATGCTGGACTCTTCCTTGTTGTGGGTCAATTTTCTCGAGAAAAACATTCTGGATGGTTGTTTAGGTCAATTTTAAGAATAACAATAAGTTTTATGTGCTTAAAAAATAGAGAGACTAAATTTGGAATTTGCAAAAGAGGGACTAAAACTGTTCTCTAAAAATTTCCTTTACAGGGAACTATAACTGAGTCTCTTGAGCTTCTAGAAAAGAATGATAATTCTTTTGTATTTTGCTAAGACTGGGTACAGATTTCACTATTTGATAGGCTCTTGACTGACCATGTGGTATCTATCCCTTCACATCCTTTATCCTGAAAATGTTTGTCTAACCATTATGATTATATAGGAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACGGTGAGTATCATGTAAAAATAGGGCAAGAAACAGTAAACTATGCTTTGGTTACTCCCAAGAATTTCAGCATGTACATTGTTTTTGTTTTAGAGGACTACCATATACTCAATATTTCTGATAAAATTTAGTAGGCATGCATATATATCCTAAACATCGTGAAGGTAATGATTGAGAGCTTAGAGCTTCATATTGGTTAGATCATAGATGATGAAGATATGCTGACAGTGGTGAAACTTTGTACTTATGAATACAAATTGATGTGATTGATTTATTAGTGGTTTGTCACCTTAGATGGATAGAGCATGTCAAAGCAAGTTTTCACATAAATGGTGGAGTTTGATCAAACTATTTTGTTATGTGATATGTGATTATCAGTGACTATGAAGAATTGAGTCTATTTTTCGGCTGGAAATGTAAAATTTACTTACATGGTTATAACTTGTAATCATGAGTCTGCATTTACCCGTTTTACCAGACATAGATATTCTGTTTAAATGTTATTTTGGTGCTGCTAGGTTTGTTTGTGCATAAAATAATAACTAAGAGATGTTCAAATAGTAGCTTTTGATAGGGTGGATGTTAGCTCAACTAACAACAAATATGAGCGAATCCAAACTAACTAGGCTGCTCACATGAATCCTCAGCATCCAGTTAGCTTCATTCAGACAAGTAGTAGTGGATATTTTAATCCTTAATAGGATGGATCTTAGATCAGTTGATTTAGGATTGGTTTGTTTGGTTGTAAATTTGAAGGTTAGATCCATTATGTTGCCCCTTTTATGCTTAATAGTGTGGTTGTATTTTGTCTTTCATTTCAAGTAGCCCAGAAACTCACCACACTGATTATGTGGAACTAATAGAACTGTCTTATGGGTGCTTGGAGTTATTTTGCTCATGGAAGAAAGCTTAACTTGCCACAAACTGGATGTTGGAAACATTTCAGCTTAGTTGACCATCCCCATCCAGCCTCATATGCACATCCAAGACTGGATGATCTTGTTGTGAAGTGTGAACAGACTCAACCATGGCTAACATGGAACTATAGTAGTTATCCTTCGTTATTTTTAGGAGAAATGAGCCTTAGAAATAAACATATTCAATGATTTGTCATCTAGGTGTGTTCTTATTGTCTTGTATGTTATTAGCAGAGTGTTTTTTCACTATAAGTTTTTGAATGGTCTTTCCCTTTACCCTTTAATAAAAAAACTTTTTTTAATGTTTTTAAATGGTTTGTCGACTTCACTTCTTTGCAGGTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTGGTAAGTTGGCACTTTCTGATCATTTATGGTTCTTGATACTGTTACTTCTGTATTTTTGACCTCAGATGTTGGGAACTGTGTAAAATGTCTTTGTAGTATTTGATTGAGACTGTAAAGCAGTATATAACCCATTGATAGTCTACCTGACCAAGTGTATGATTGAAATTTGAAAACTAGCTTTCTTTTCAATTTCAGATATATCTGAACCTAAATAGGGTATTCCCCCATGGGCCAAAGGTACCCTCAGATATTCCTTGGCTACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCA</genome_strand>
        <mrna_strand>AAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG.........................................................................................................GAAACCAAAGCATGGACCATCCTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254028" ref_strand="+" ref_description="SGN-E254028 [cLEG-34-E8]">
      <seq>ataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatgaaagtggccttggaaatctcatcagagaaacttatggtctcctagggttgcgtacatacttcacttctggcgagaaggaaaccaaagcatggaccatcctcacaggaatgactgctcctcaagcagctggggttattcactccgactttgaaaagggcttcatcagggcagagacggttgcttacgatgactttgtttctgctggttcttttgcagctgcaagggagaaaggactgttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtgaaggagatttcacgaatttttatgttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="48840" stop="44079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48540" g_stop="48385" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48384" i_stop="47884" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47883" g_stop="47737" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="303" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47736" i_stop="47632" i_length="105">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47631" g_stop="47604" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="331" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47603" i_stop="46709" i_length="895">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46708" g_stop="46638" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="402" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46637" i_stop="45385" i_length="1253">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45384" g_stop="45325" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="462" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45324" i_stop="44494" i_length="831">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44493" g_stop="44379" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="577" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E254028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48540" e_stop="48385"/>
          <exon e_start="47883" e_stop="47737"/>
          <exon e_start="47631" e_stop="47604"/>
          <exon e_start="46708" e_stop="46638"/>
          <exon e_start="45384" e_stop="45325"/>
          <exon e_start="44493" e_stop="44379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAGGTGAAACAAATAAAAGAGCTTTAGTGATATTTGACTGTCGGCGTAGTTTTCGCCTTTGGGTACTGTAGTGTATGAGTATTGAGTTTATCATTGGTTAACTTGCAGGAAACCAAAGCATGGACCATCCTCACAGGTTTGCACTATGGTTTCTCTATTTCAATCTTTTCTTAAAGTGAAAAATAAGCAGTTCTGGTCCCTCTTATAGTATTTTCCAATATTGGTACTTTTTTATCTGGCTAAGCACATAAAACCTCCACTTTTCCTGTTTTTGCTCTTTTAATTCTATTGTTAATGGCACTTCTACAAGTTAATGGAATCTATTTTGTTTCCTTGTCTTCAGTAGCTTTACTTAAATGGCAACTTAGCTTTTCCTATTAAATACCTGTGTCTTTTCCTCTGATTAAAATATTTACTTTTAATCATTTAAAAGGTGGGAAAAGGGAAAGCGCAAAAAAGTCATATTCTTCATGCTCATGCTTGTTGTTTTCTATCCCTCCTCTCACATTGTCTCTACAAGGCTCATTCATTCAACCAGCAGCCTTCTCACTTATTCTCCTTCTCCAGGCTGCTGCCTTTTCTCTCGTTTGACAGCTCCTGCAAACAACCATATGCAGCACTTTTTTCCTCTTCCAAGCTCCTCCACATGAAAGTTCTTCTTCTCCCTACTTCATTTTCTTTTTCTGATGCTGGACTCTTCCTTGTTGTGGGTCAATTTTCTCGAGAAAAACATTCTGGATGGTTGTTTAGGTCAATTTTAAGAATAACAATAAGTTTTATGTGCTTAAAAAATAGAGAGACTAAATTTGGAATTTGCAAAAGAGGGACTAAAACTGTTCTCTAAAAATTTCCTTTACAGGGAACTATAACTGAGTCTCTTGAGCTTCTAGAAAAGAATGATAATTCTTTTGTATTTTGCTAAGACTGGGTACAGATTTCACTATTTGATAGGCTCTTGACTGACCATGTGGTATCTATCCCTTCACATCCTTTATCCTGAAAATGTTTGTCTAACCATTATGATTATATAGGAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACGGTGAGTATCATGTAAAAATAGGGCAAGAAACAGTAAACTATGCTTTGGTTACTCCCAAGAATTTCAGCATGTACATTGTTTTTGTTTTAGAGGACTACCATATACTCAATATTTCTGATAAAATTTAGTAGGCATGCATATATATCCTAAACATCGTGAAGGTAATGATTGAGAGCTTAGAGCTTCATATTGGTTAGATCATAGATGATGAAGATATGCTGACAGTGGTGAAACTTTGTACTTATGAATACAAATTGATGTGATTGATTTATTAGTGGTTTGTCACCTTAGATGGATAGAGCATGTCAAAGCAAGTTTTCACATAAATGGTGGAGTTTGATCAAACTATTTTGTTATGTGATATGTGATTATCAGTGACTATGAAGAATTGAGTCTATTTTTCGGCTGGAAATGTAAAATTTACTTACATGGTTATAACTTGTAATCATGAGTCTGCATTTACCCGTTTTACCAGACATAGATATTCTGTTTAAATGTTATTTTGGTGCTGCTAGGTTTGTTTGTGCATAAAATAATAACTAAGAGATGTTCAAATAGTAGCTTTTGATAGGGTGGATGTTAGCTCAACTAACAACAAATATGAGCGAATCCAAACTAACTAGGCTGCTCACATGAATCCTCAGCATCCAGTTAGCTTCATTCAGACAAGTAGTAGTGGATATTTTAATCCTTAATAGGATGGATCTTAGATCAGTTGATTTAGGATTGGTTTGTTTGGTTGTAAATTTGAAGGTTAGATCCATTATGTTGCCCCTTTTATGCTTAATAGTGTGGTTGTATTTTGTCTTTCATTTCAAGTAGCCCAGAAACTCACCACACTGATTATGTGGAACTAATAGAACTGTCTTATGGGTGCTTGGAGTTATTTTGCTCATGGAAGAAAGCTTAACTTGCCACAAACTGGATGTTGGAAACATTTCAGCTTAGTTGACCATCCCCATCCAGCCTCATATGCACATCCAAGACTGGATGATCTTGTTGTGAAGTGTGAACAGACTCAACCATGGCTAACATGGAACTATAGTAGTTATCCTTCGTTATTTTTAGGAGAAATGAGCCTTAGAAATAAACATATTCAATGATTTGTCATCTAGGTGTGTTCTTATTGTCTTGTATGTTATTAGCAGAGTGTTTTTTCACTATAAGTTTTTGAATGGTCTTTCCCTTTACCCTTTAATAAAAAAACTTTTTTTAATGTTTTTAAATGGTTTGTCGACTTCACTTCTTTGCAGGTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTGGTAAGTTGGCACTTTCTGATCATTTATGGTTCTTGATACTGTTACTTCTGTATTTTTGACCTCAGATGTTGGGAACTGTGTAAAATGTCTTTGTAGTATTTGATTGAGACTGTAAAGCAGTATATAACCCATTGATAGTCTACCTGACCAAGTGTATGATTGAAATTTGAAAACTAGCTTTCTTTTCAATTTCAGATATATCTGAACCTAAATAGGGTATTCCCCCATGGGCCAAAGGTACCCTCAGATATTCCTTGGCTACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTG</genome_strand>
        <mrna_strand>ATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG.........................................................................................................GAAACCAAAGCATGGACCATCCTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377533" ref_strand="+" ref_description="SGN-E377533 [TUS-20-D1]">
      <seq>tacctgaaatgtctcgaggaatcagttaaaacttaagactcgtgattgcagtgtaatttcaaaaatagataaatatttaaagtaacggtaaataagctaaatatttcaattttagctgttaaaaaagtttattttaaaaaaaaaacccttaaaataaccttagagtctatctttggcttgtaagcacatgcagtggttacattaaaataccttcccgaagcaaaaagcttagccaaacacaaataaagaatccatggttgtttttggtgtcatttcctgattattgtcaattggaacctttttaaattttttagtgaaccattatcatctcaataaccttcttactttggctccagcacttcaaaattaaatgttcattgcctcccctatccccaaattgtaatgaggttgctaatctcatgtaacttttactagtaagtagttttctttcacaaagataattacttgtgtagtagaatgtaaacggtgcttctatgtgagcactaagtctactgacccgtgcaaacaagagaatagatcaagctggttacaggatttatctgtgtatgcagttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtgaaggagatttcacgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="45365" stop="44089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45065" g_stop="44389" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E377533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45065" e_stop="44389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTT</genome_strand>
        <mrna_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375024" ref_strand="+" ref_description="SGN-E375024 [TUS-36-K15]">
      <seq>tacctgaaatgtctcgaggaatcagttaaaacttaagactcgtgattgcagtgtaatttcaaaaatagataaatatttaaagtaacggtaaataagctaaatatttcaattttagctgttaaaaaagtttattttaaaaaaaaaacccttaaaataaccttagagtctatctttggcttgtaagcacatgcagtggttacattaaaataccttcccgaagcaaaaagcttagccaaacacaaataaagaatccatggttgtttttggtgtcatttcctgattattgtcaattggaacctttttaaattttttagtgaaccattatcatctcaataaccttcttactttggctccagcacttcaaaattaaatgttcattgcctcccctatccccaaattgtaatgaggttgctaatctcatgtaacttttactagtaagtagttttctttcacaaagataattacttgtgtagtagaatgtaaacggtgcttctatgtgagcactaagtctactgacccgtgcaaacaagagaatagatcaagctggttacaggatttatctgtgtatgcagttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacagttggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="45365" stop="44107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45065" g_stop="44407" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E375024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45065" e_stop="44407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGA</genome_strand>
        <mrna_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377354" ref_strand="+" ref_description="SGN-E377354 [TUS-21-I2]">
      <seq>tacctgaaatgtctcgaggaatcagttaaaacttaagactcgtgattgcagtgtaatttcaaaaatagataaatatttaaagtaacggtaaataagctaaatatttcaattttagctgttaaaaaagtttattttaaaaaaaaaacccttaaaataaccttagagtctatctttggcttgtaagcacatgcagtggttacattaaaataccttcccgaagcaaaaagcttagccaaacacaaataaagaatccatggttgtttttggtgtcatttcctgattattgtcaattggaacctttttaaattttttagtgaaccattatcatctcaataaccttcttactttggctccagcacttcaaaattaaatgttcattgcctcccctatccccaaattgtaatgaggttgctaatctcatgtaacttttactagtaagtagttttctttcacaaagataattacttgtgtagtagaatgtaaacggtgcttctatgtgagcactaagtctactgacccgtgcaaacaagagaatagatcaagctggttacaggatttatctgtgtatgcagttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaaaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="45365" stop="44114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45065" g_stop="44414" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E377354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45065" e_stop="44414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAG</genome_strand>
        <mrna_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272799" ref_strand="+" ref_description="SGN-E272799 [cLEM-21-N6]">
      <seq>gaggagaaaataccaacaagcacctactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatgaaagtggccttggaaatctcatcagagaaacttatggtctcctagggttgcgtacataccttcacttctggcgagaaggaaaccaaagcatggaccatcctcacaggaatgactgctcctcaagcagctggggttattcactccgactttgaaaagggcttcatcagggcagagacggttgcttacgatgactttgtttctgctggttcttttgcagctgcaagggagaaaggactgttgaggttagaaggaaaagattatgttgtgcaagaaggggatataatgctgttccggttcaatgtctaattgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="48916" stop="44119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48618" g_stop="48385" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48384" i_stop="47884" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47883" g_stop="47737" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="384" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47736" i_stop="47632" i_length="105">
            <donor d_prob="0.803" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47631" g_stop="47604" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="412" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47603" i_stop="46709" i_length="895">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46708" g_stop="46638" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="483" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46637" i_stop="45385" i_length="1253">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45384" g_stop="45325" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="543" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45324" i_stop="44494" i_length="831">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44493" g_stop="44419" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="618" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E272799" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48618" e_stop="48385"/>
          <exon e_start="47883" e_stop="47737"/>
          <exon e_start="47631" e_stop="47604"/>
          <exon e_start="46708" e_stop="46638"/>
          <exon e_start="45384" e_stop="45325"/>
          <exon e_start="44493" e_stop="44419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGAAAATA-CAACAAGCA-CTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATA-CTTCACTTCTGGCGAGAAGGTGAAACAAATAAAAGAGCTTTAGTGATATTTGACTGTCGGCGTAGTTTTCGCCTTTGGGTACTGTAGTGTATGAGTATTGAGTTTATCATTGGTTAACTTGCAGGAAACCAAAGCATGGACCATCCTCACAGGTTTGCACTATGGTTTCTCTATTTCAATCTTTTCTTAAAGTGAAAAATAAGCAGTTCTGGTCCCTCTTATAGTATTTTCCAATATTGGTACTTTTTTATCTGGCTAAGCACATAAAACCTCCACTTTTCCTGTTTTTGCTCTTTTAATTCTATTGTTAATGGCACTTCTACAAGTTAATGGAATCTATTTTGTTTCCTTGTCTTCAGTAGCTTTACTTAAATGGCAACTTAGCTTTTCCTATTAAATACCTGTGTCTTTTCCTCTGATTAAAATATTTACTTTTAATCATTTAAAAGGTGGGAAAAGGGAAAGCGCAAAAAAGTCATATTCTTCATGCTCATGCTTGTTGTTTTCTATCCCTCCTCTCACATTGTCTCTACAAGGCTCATTCATTCAACCAGCAGCCTTCTCACTTATTCTCCTTCTCCAGGCTGCTGCCTTTTCTCTCGTTTGACAGCTCCTGCAAACAACCATATGCAGCACTTTTTTCCTCTTCCAAGCTCCTCCACATGAAAGTTCTTCTTCTCCCTACTTCATTTTCTTTTTCTGATGCTGGACTCTTCCTTGTTGTGGGTCAATTTTCTCGAGAAAAACATTCTGGATGGTTGTTTAGGTCAATTTTAAGAATAACAATAAGTTTTATGTGCTTAAAAAATAGAGAGACTAAATTTGGAATTTGCAAAAGAGGGACTAAAACTGTTCTCTAAAAATTTCCTTTACAGGGAACTATAACTGAGTCTCTTGAGCTTCTAGAAAAGAATGATAATTCTTTTGTATTTTGCTAAGACTGGGTACAGATTTCACTATTTGATAGGCTCTTGACTGACCATGTGGTATCTATCCCTTCACATCCTTTATCCTGAAAATGTTTGTCTAACCATTATGATTATATAGGAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACGGTGAGTATCATGTAAAAATAGGGCAAGAAACAGTAAACTATGCTTTGGTTACTCCCAAGAATTTCAGCATGTACATTGTTTTTGTTTTAGAGGACTACCATATACTCAATATTTCTGATAAAATTTAGTAGGCATGCATATATATCCTAAACATCGTGAAGGTAATGATTGAGAGCTTAGAGCTTCATATTGGTTAGATCATAGATGATGAAGATATGCTGACAGTGGTGAAACTTTGTACTTATGAATACAAATTGATGTGATTGATTTATTAGTGGTTTGTCACCTTAGATGGATAGAGCATGTCAAAGCAAGTTTTCACATAAATGGTGGAGTTTGATCAAACTATTTTGTTATGTGATATGTGATTATCAGTGACTATGAAGAATTGAGTCTATTTTTCGGCTGGAAATGTAAAATTTACTTACATGGTTATAACTTGTAATCATGAGTCTGCATTTACCCGTTTTACCAGACATAGATATTCTGTTTAAATGTTATTTTGGTGCTGCTAGGTTTGTTTGTGCATAAAATAATAACTAAGAGATGTTCAAATAGTAGCTTTTGATAGGGTGGATGTTAGCTCAACTAACAACAAATATGAGCGAATCCAAACTAACTAGGCTGCTCACATGAATCCTCAGCATCCAGTTAGCTTCATTCAGACAAGTAGTAGTGGATATTTTAATCCTTAATAGGATGGATCTTAGATCAGTTGATTTAGGATTGGTTTGTTTGGTTGTAAATTTGAAGGTTAGATCCATTATGTTGCCCCTTTTATGCTTAATAGTGTGGTTGTATTTTGTCTTTCATTTCAAGTAGCCCAGAAACTCACCACACTGATTATGTGGAACTAATAGAACTGTCTTATGGGTGCTTGGAGTTATTTTGCTCATGGAAGAAAGCTTAACTTGCCACAAACTGGATGTTGGAAACATTTCAGCTTAGTTGACCATCCCCATCCAGCCTCATATGCACATCCAAGACTGGATGATCTTGTTGTGAAGTGTGAACAGACTCAACCATGGCTAACATGGAACTATAGTAGTTATCCTTCGTTATTTTTAGGAGAAATGAGCCTTAGAAATAAACATATTCAATGATTTGTCATCTAGGTGTGTTCTTATTGTCTTGTATGTTATTAGCAGAGTGTTTTTTCACTATAAGTTTTTGAATGGTCTTTCCCTTTACCCTTTAATAAAAAAACTTTTTTTAATGTTTTTAAATGGTTTGTCGACTTCACTTCTTTGCAGGTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTGGTAAGTTGGCACTTTCTGATCATTTATGGTTCTTGATACTGTTACTTCTGTATTTTTGACCTCAGATGTTGGGAACTGTGTAAAATGTCTTTGTAGTATTTGATTGAGACTGTAAAGCAGTATATAACCCATTGATAGTCTACCTGACCAAGTGTATGATTGAAATTTGAAAACTAGCTTTCTTTTCAATTTCAGATATATCTGAACCTAAATAGGGTATTCCCCCATGGGCCAAAGGTACCCTCAGATATTCCTTGGCTACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAA</genome_strand>
        <mrna_strand>GAGGAGAAAATACCAACAAGCACCTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACCTTCACTTCTGGCGAGAAG.........................................................................................................GAAACCAAAGCATGGACCATCCTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232994" ref_strand="+" ref_description="SGN-E232994 [cLED-6-H21]">
      <seq>tacctgaaatgtctcgaggaatcagttaaaacttaagactcgtgattgcagtgtaatttcaaaaatagataaatatttaaagtaacggtaaataagctaaatatttcaattttagctgttaaaaaagtttattttaaaaaaaaaacccttaaaataaccttagagtctatctttggcttgtaagcacatgcagtggttacattaaaataccttcccgaagcaaaaagcttagccaaacacaaataaagaatccatggttgtttttggtgtcatttcctgattattgtcaattggaacctttttaaattttttagtgaaccattatcatctcaataaccttcttactttggctccagcacttcaaaattaaatgttcattgcctcccctatccccaaattgtaatgaggttgctaatctcatgtaacttttactagtaagtagttttctttcacaaagataattacttgtgtagtagaatgtaaacggtgcttctatgtgagcactaagtctactgacccgtgcaaacaagagaatagatcaagctggttacaggatttatctgtgtatgcagttgaagttagaaggaaaagattatgttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="45365" stop="44164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45065" g_stop="44464" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E232994" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45065" e_stop="44464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTG</genome_strand>
        <mrna_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAAGTTAGAAGGAAAAGATTATGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236379" ref_strand="+" ref_description="SGN-E236379 [cLED-13-E20]">
      <seq>tacctgaaatgtctcgaggaatcagttaaaacttaagactcgtgattgcagtgtaatttcaaaaatagataaatatttaaagtaacggtaaataagctaaatatttcaattttagctgttaaaaaagtttattttaaaaaaaaaacccttaaaataaccttagagtctatctttggcttgtaagcacatgcagtggttacattaaaataccttcccgaagcaaaaagcttagccaaacacaaataaagaatccatggttgtttttggtgtcatttcctgattattgtcaattggaacctttttaaattttttagtgaaccattatcatctcaataaccttcttactttggctccagcacttcaaaattaaatgttcattgcctcccctatccccaaattgtaatgaggttgctaatctcatgtaacttttactagtaagtagttttctttcacaaagataattacttgtgtagtagaatgtaaacggtgcttctatgtgagcactaagtctactgacccgtgcaaacaagagaatagatcaagctggttacaggatttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="45365" stop="44204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45065" g_stop="44504" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E236379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45065" e_stop="44504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCT</genome_strand>
        <mrna_strand>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728801" ref_strand="+" ref_description="SGN-E728801 [LA19AA02]">
      <seq>gttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaaggaggaagcagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatgaaagtggccttggaaatctcatcagagaaacttatggtctcctagggttgcgtacatacttcacttctggcgagaaggaaaccaaagcatggaccatcctcacaggaatgactgctcctcaagcagctggggttattcactccgactttgaaaagggcttcatcatggcagagacggttgcttacgatgactttgtttctgctggttcttttgcagctgcaagggagaaaggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="49607" stop="45026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49307" g_stop="49227" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49226" i_stop="48851" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48850" g_stop="48788" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="144" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48787" i_stop="48640" i_length="148">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48639" g_stop="48385" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="399" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48384" i_stop="47884" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47883" g_stop="47737" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="546" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47736" i_stop="47632" i_length="105">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47631" g_stop="47604" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="574" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47603" i_stop="46709" i_length="895">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46708" g_stop="46638" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="645" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46637" i_stop="45385" i_length="1253">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45384" g_stop="45326" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="704" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E728801" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49307" e_stop="49227"/>
          <exon e_start="48850" e_stop="48788"/>
          <exon e_start="48639" e_stop="48385"/>
          <exon e_start="47883" e_stop="47737"/>
          <exon e_start="47631" e_stop="47604"/>
          <exon e_start="46708" e_stop="46638"/>
          <exon e_start="45384" e_stop="45326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAGGTGAAACAAATAAAAGAGCTTTAGTGATATTTGACTGTCGGCGTAGTTTTCGCCTTTGGGTACTGTAGTGTATGAGTATTGAGTTTATCATTGGTTAACTTGCAGGAAACCAAAGCATGGACCATCCTCACAGGTTTGCACTATGGTTTCTCTATTTCAATCTTTTCTTAAAGTGAAAAATAAGCAGTTCTGGTCCCTCTTATAGTATTTTCCAATATTGGTACTTTTTTATCTGGCTAAGCACATAAAACCTCCACTTTTCCTGTTTTTGCTCTTTTAATTCTATTGTTAATGGCACTTCTACAAGTTAATGGAATCTATTTTGTTTCCTTGTCTTCAGTAGCTTTACTTAAATGGCAACTTAGCTTTTCCTATTAAATACCTGTGTCTTTTCCTCTGATTAAAATATTTACTTTTAATCATTTAAAAGGTGGGAAAAGGGAAAGCGCAAAAAAGTCATATTCTTCATGCTCATGCTTGTTGTTTTCTATCCCTCCTCTCACATTGTCTCTACAAGGCTCATTCATTCAACCAGCAGCCTTCTCACTTATTCTCCTTCTCCAGGCTGCTGCCTTTTCTCTCGTTTGACAGCTCCTGCAAACAACCATATGCAGCACTTTTTTCCTCTTCCAAGCTCCTCCACATGAAAGTTCTTCTTCTCCCTACTTCATTTTCTTTTTCTGATGCTGGACTCTTCCTTGTTGTGGGTCAATTTTCTCGAGAAAAACATTCTGGATGGTTGTTTAGGTCAATTTTAAGAATAACAATAAGTTTTATGTGCTTAAAAAATAGAGAGACTAAATTTGGAATTTGCAAAAGAGGGACTAAAACTGTTCTCTAAAAATTTCCTTTACAGGGAACTATAACTGAGTCTCTTGAGCTTCTAGAAAAGAATGATAATTCTTTTGTATTTTGCTAAGACTGGGTACAGATTTCACTATTTGATAGGCTCTTGACTGACCATGTGGTATCTATCCCTTCACATCCTTTATCCTGAAAATGTTTGTCTAACCATTATGATTATATAGGAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACGGTGAGTATCATGTAAAAATAGGGCAAGAAACAGTAAACTATGCTTTGGTTACTCCCAAGAATTTCAGCATGTACATTGTTTTTGTTTTAGAGGACTACCATATACTCAATATTTCTGATAAAATTTAGTAGGCATGCATATATATCCTAAACATCGTGAAGGTAATGATTGAGAGCTTAGAGCTTCATATTGGTTAGATCATAGATGATGAAGATATGCTGACAGTGGTGAAACTTTGTACTTATGAATACAAATTGATGTGATTGATTTATTAGTGGTTTGTCACCTTAGATGGATAGAGCATGTCAAAGCAAGTTTTCACATAAATGGTGGAGTTTGATCAAACTATTTTGTTATGTGATATGTGATTATCAGTGACTATGAAGAATTGAGTCTATTTTTCGGCTGGAAATGTAAAATTTACTTACATGGTTATAACTTGTAATCATGAGTCTGCATTTACCCGTTTTACCAGACATAGATATTCTGTTTAAATGTTATTTTGGTGCTGCTAGGTTTGTTTGTGCATAAAATAATAACTAAGAGATGTTCAAATAGTAGCTTTTGATAGGGTGGATGTTAGCTCAACTAACAACAAATATGAGCGAATCCAAACTAACTAGGCTGCTCACATGAATCCTCAGCATCCAGTTAGCTTCATTCAGACAAGTAGTAGTGGATATTTTAATCCTTAATAGGATGGATCTTAGATCAGTTGATTTAGGATTGGTTTGTTTGGTTGTAAATTTGAAGGTTAGATCCATTATGTTGCCCCTTTTATGCTTAATAGTGTGGTTGTATTTTGTCTTTCATTTCAAGTAGCCCAGAAACTCACCACACTGATTATGTGGAACTAATAGAACTGTCTTATGGGTGCTTGGAGTTATTTTGCTCATGGAAGAAAGCTTAACTTGCCACAAACTGGATGTTGGAAACATTTCAGCTTAGTTGACCATCCCCATCCAGCCTCATATGCACATCCAAGACTGGATGATCTTGTTGTGAAGTGTGAACAGACTCAACCATGGCTAACATGGAACTATAGTAGTTATCCTTCGTTATTTTTAGGAGAAATGAGCCTTAGAAATAAACATATTCAATGATTTGTCATCTAGGTGTGTTCTTATTGTCTTGTATGTTATTAGCAGAGTGTTTTTTCACTATAAGTTTTTGAATGGTCTTTCCCTTTACCCTTTAATAAAAAAACTTTTTTTAATGTTTTTAAATGGTTTGTCGACTTCACTTCTTTGCAGGTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACT</genome_strand>
        <mrna_strand>GTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG....................................................................................................................................................GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG.........................................................................................................GAAACCAAAGCATGGACCATCCTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCATGGCAGAGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209664" ref_strand="+" ref_description="SGN-E209664 [cLEC-54-F4]">
      <seq>aaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatgaaagtggccttggaaatctcatcagagaaacttatggtctcctagggttgcgtacatacttcacttctggcgagaaggaaaccaaagcatggaccatcctcacaggaatgactgctcctcaagcagctggggttattcactccgactttgaaaagggcttcatcagggcagagacggttgcttacgatgactttgtttctgctggttcttttgcagctgcaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="48850" stop="45036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48550" g_stop="48385" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48384" i_stop="47884" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47883" g_stop="47737" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="313" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47736" i_stop="47632" i_length="105">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47631" g_stop="47604" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="341" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47603" i_stop="46709" i_length="895">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46708" g_stop="46638" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="412" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46637" i_stop="45385" i_length="1253">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45384" g_stop="45336" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="461" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E209664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48550" e_stop="48385"/>
          <exon e_start="47883" e_stop="47737"/>
          <exon e_start="47631" e_stop="47604"/>
          <exon e_start="46708" e_stop="46638"/>
          <exon e_start="45384" e_stop="45336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAGGTGAAACAAATAAAAGAGCTTTAGTGATATTTGACTGTCGGCGTAGTTTTCGCCTTTGGGTACTGTAGTGTATGAGTATTGAGTTTATCATTGGTTAACTTGCAGGAAACCAAAGCATGGACCATCCTCACAGGTTTGCACTATGGTTTCTCTATTTCAATCTTTTCTTAAAGTGAAAAATAAGCAGTTCTGGTCCCTCTTATAGTATTTTCCAATATTGGTACTTTTTTATCTGGCTAAGCACATAAAACCTCCACTTTTCCTGTTTTTGCTCTTTTAATTCTATTGTTAATGGCACTTCTACAAGTTAATGGAATCTATTTTGTTTCCTTGTCTTCAGTAGCTTTACTTAAATGGCAACTTAGCTTTTCCTATTAAATACCTGTGTCTTTTCCTCTGATTAAAATATTTACTTTTAATCATTTAAAAGGTGGGAAAAGGGAAAGCGCAAAAAAGTCATATTCTTCATGCTCATGCTTGTTGTTTTCTATCCCTCCTCTCACATTGTCTCTACAAGGCTCATTCATTCAACCAGCAGCCTTCTCACTTATTCTCCTTCTCCAGGCTGCTGCCTTTTCTCTCGTTTGACAGCTCCTGCAAACAACCATATGCAGCACTTTTTTCCTCTTCCAAGCTCCTCCACATGAAAGTTCTTCTTCTCCCTACTTCATTTTCTTTTTCTGATGCTGGACTCTTCCTTGTTGTGGGTCAATTTTCTCGAGAAAAACATTCTGGATGGTTGTTTAGGTCAATTTTAAGAATAACAATAAGTTTTATGTGCTTAAAAAATAGAGAGACTAAATTTGGAATTTGCAAAAGAGGGACTAAAACTGTTCTCTAAAAATTTCCTTTACAGGGAACTATAACTGAGTCTCTTGAGCTTCTAGAAAAGAATGATAATTCTTTTGTATTTTGCTAAGACTGGGTACAGATTTCACTATTTGATAGGCTCTTGACTGACCATGTGGTATCTATCCCTTCACATCCTTTATCCTGAAAATGTTTGTCTAACCATTATGATTATATAGGAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACGGTGAGTATCATGTAAAAATAGGGCAAGAAACAGTAAACTATGCTTTGGTTACTCCCAAGAATTTCAGCATGTACATTGTTTTTGTTTTAGAGGACTACCATATACTCAATATTTCTGATAAAATTTAGTAGGCATGCATATATATCCTAAACATCGTGAAGGTAATGATTGAGAGCTTAGAGCTTCATATTGGTTAGATCATAGATGATGAAGATATGCTGACAGTGGTGAAACTTTGTACTTATGAATACAAATTGATGTGATTGATTTATTAGTGGTTTGTCACCTTAGATGGATAGAGCATGTCAAAGCAAGTTTTCACATAAATGGTGGAGTTTGATCAAACTATTTTGTTATGTGATATGTGATTATCAGTGACTATGAAGAATTGAGTCTATTTTTCGGCTGGAAATGTAAAATTTACTTACATGGTTATAACTTGTAATCATGAGTCTGCATTTACCCGTTTTACCAGACATAGATATTCTGTTTAAATGTTATTTTGGTGCTGCTAGGTTTGTTTGTGCATAAAATAATAACTAAGAGATGTTCAAATAGTAGCTTTTGATAGGGTGGATGTTAGCTCAACTAACAACAAATATGAGCGAATCCAAACTAACTAGGCTGCTCACATGAATCCTCAGCATCCAGTTAGCTTCATTCAGACAAGTAGTAGTGGATATTTTAATCCTTAATAGGATGGATCTTAGATCAGTTGATTTAGGATTGGTTTGTTTGGTTGTAAATTTGAAGGTTAGATCCATTATGTTGCCCCTTTTATGCTTAATAGTGTGGTTGTATTTTGTCTTTCATTTCAAGTAGCCCAGAAACTCACCACACTGATTATGTGGAACTAATAGAACTGTCTTATGGGTGCTTGGAGTTATTTTGCTCATGGAAGAAAGCTTAACTTGCCACAAACTGGATGTTGGAAACATTTCAGCTTAGTTGACCATCCCCATCCAGCCTCATATGCACATCCAAGACTGGATGATCTTGTTGTGAAGTGTGAACAGACTCAACCATGGCTAACATGGAACTATAGTAGTTATCCTTCGTTATTTTTAGGAGAAATGAGCCTTAGAAATAAACATATTCAATGATTTGTCATCTAGGTGTGTTCTTATTGTCTTGTATGTTATTAGCAGAGTGTTTTTTCACTATAAGTTTTTGAATGGTCTTTCCCTTTACCCTTTAATAAAAAAACTTTTTTTAATGTTTTTAAATGGTTTGTCGACTTCACTTCTTTGCAGGTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGG</genome_strand>
        <mrna_strand>AAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG.........................................................................................................GAAACCAAAGCATGGACCATCCTCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240119" ref_strand="+" ref_description="SGN-E240119 [cLED-32-M22]">
      <seq>gactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatgaaagtggccttggaaatctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="49648" stop="47493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49337" g_stop="49227" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="126" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49226" i_stop="48851" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48850" g_stop="48788" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="189" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48787" i_stop="48630" i_length="158">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48629" g_stop="48385" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="434" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48384" i_stop="47884" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47883" g_stop="47793" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="525" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E240119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49337" e_stop="49227"/>
          <exon e_start="48850" e_stop="48788"/>
          <exon e_start="48629" e_stop="48385"/>
          <exon e_start="47883" e_stop="47793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCA</genome_strand>
        <mrna_strand>GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG..............................................................................................................................................................AAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729328" ref_strand="+" ref_description="SGN-E729328 [LA20CH08]">
      <seq>gggatagtcgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcggtcccggcttcgatagagtttgttgatattgctggacttgtaaagggagccagtcaaggggagggcctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaaggaggaagcagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgctcggtgtcaatgaaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="51253" stop="47508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50953" g_stop="50825" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50824" i_stop="50699" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50698" g_stop="50645" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="183" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49337" g_stop="49227" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="294" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49226" i_stop="48851" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48850" g_stop="48788" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="357" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48787" i_stop="48640" i_length="148">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48639" g_stop="48385" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="612" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48384" i_stop="47884" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47883" g_stop="47808" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="688" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E729328" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50953" e_stop="50825"/>
          <exon e_start="50698" e_stop="50645"/>
          <exon e_start="49337" e_stop="49227"/>
          <exon e_start="48850" e_stop="48788"/>
          <exon e_start="48639" e_stop="48385"/>
          <exon e_start="47883" e_stop="47808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTG</genome_strand>
        <mrna_strand>GGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG....................................................................................................................................................GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTCGGTGTCAATGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269681" ref_strand="+" ref_description="SGN-E269681 [cLEM-17-O7]">
      <seq>cctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaaggaggaagcagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggttgagtctgagctatctgaacttcctttagaagaaagaatagaatatttgaaatcgcttggtgtcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="50996" stop="47514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50696" g_stop="50645" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49337" g_stop="49227" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="163" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49226" i_stop="48851" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48850" g_stop="48788" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="226" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48787" i_stop="48640" i_length="148">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48639" g_stop="48385" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="481" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48384" i_stop="47884" i_length="501">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47883" g_stop="47814" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="551" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E269681" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50696" e_stop="50645"/>
          <exon e_start="49337" e_stop="49227"/>
          <exon e_start="48850" e_stop="48788"/>
          <exon e_start="48639" e_stop="48385"/>
          <exon e_start="47883" e_stop="47814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATCTAGTTGTGGTCCTCGATACAAGTCTAGAAACTCTCTTTGTTAAAGAAGGTGATACGAGTCTAGAAGCTCTTATGATAAAATAAATACCAGAAGGAAATTCGGGATGTGTGACATTGCCTTTCTATGAGAGAAGGGGTGAAAAGCATGAGCTGACCTTCATGGAAACCGGGACCTGTCAAGATCTCGTAACCATTTTAGGTAGAGGAGCTATTATTTACCAACTTGTTTTCTTTGCCATATGTATTTTTAACTTTTTCCACCTTTAGGGATTAGGAGTTATGATGTGCTAAAGTGAATCTAGCTTTCTACACGATAAAAAATCTCTGTGGAACAGAGGGTTGCTTCCAGTTGCTACATATTTCTGGTCTTCCTATTGCAGGTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATG</genome_strand>
        <mrna_strand>CCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG....................................................................................................................................................GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340487" ref_strand="+" ref_description="SGN-E340487 [cTOF-1-F19]">
      <seq>tcaataacctaaagtttcctaatatcaattattagtcatgttttcacttattgtatcattgcatcagtggcattataaattgaagatacaacaatttgttaaatattttctatggcagggcctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaaggaggaagcagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaaagctgctgagttaaattctggtgtggtaactatttcagcgcaggtcagttgacatctttcacttttcccttttgtatttgaatcaatcaaaattcatgcttatttcatttcggggggagatctttatcctaatgctctattggaaattactttaattgtcatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="51116" stop="47963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50816" g_stop="50645" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49337" g_stop="49227" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="283" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49226" i_stop="48851" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48850" g_stop="48788" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="346" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48787" i_stop="48640" i_length="148">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48639" g_stop="48263" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="723" r_length="377" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E340487" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50816" e_stop="50645"/>
          <exon e_start="49337" e_stop="49227"/>
          <exon e_start="48850" e_stop="48788"/>
          <exon e_start="48639" e_stop="48263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATC</genome_strand>
        <mrna_strand>TCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG....................................................................................................................................................GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCGGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728549" ref_strand="+" ref_description="SGN-E728549 [LA18AG04]">
      <seq>acttcaacttgctagtggtaaaatggcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgcatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcggcaagtccacgctgttcaacgccgtcgttgagaatggaaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagtcgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcggtcccggcttcgatagagtttgttgatattgctggacttgtaaagggagccagtcaaggggagggcctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaaggaggaagcagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaaggatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaaatgtagcggaatcagaggtagctgaacctgaaaataatcctcatgtgaaggaagtaattaaaaagctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="52542" stop="48121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52242" g_stop="51999" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51998" i_stop="51014" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51013" g_stop="50825" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="433" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50824" i_stop="50699" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50698" g_stop="50645" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="487" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49337" g_stop="49227" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="598" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49226" i_stop="48851" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48850" g_stop="48788" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="661" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48787" i_stop="48640" i_length="148">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48639" g_stop="48421" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="879" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E728549" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52242" e_stop="51999"/>
          <exon e_start="51013" e_stop="50825"/>
          <exon e_start="50698" e_stop="50645"/>
          <exon e_start="49337" e_stop="49227"/>
          <exon e_start="48850" e_stop="48788"/>
          <exon e_start="48639" e_stop="48421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCT</genome_strand>
        <mrna_strand>ACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG....................................................................................................................................................GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATT-AAAAAGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728529" ref_strand="+" ref_description="SGN-E728529 [LA18AE02]">
      <seq>gacagatatttgtagttgaagcacggcgatacataacagcaacgctgtgtgtaccactcaataatcacttcaaattgctagtggtaaaatggcgagaatggcttgcactcatcttcttccttccatggcaattccgctcaagtcttcttacctcaatggatcttctcaccagtggttacgactctcacaatctactcatcctgtggtactcatcaaaaggcacttctccgtcgctagaataaccatgagtttgcgagctggcatcctaggccttcctaatgtccgcaactccacactgctcaacgccgtctttgagaatggaaaggctcaggctgctaattttcctttttgcacaatacagccaaatgtaaggatagtcgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcggtcccggcttcgatagagtttgttgatattgctggacttgtaaaggaagccagtcaaggggagggcctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaagtagtacgttgttttgacgaccatgactttgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcaaaaaaggtagagctaaagattcacaagctaaagtaaaggaggaagcagaaaagtctgccttggagaaaatacaacaagcactactggatggaaaaccagcacgatcagtatctttgtcggagtttgaaaagatgctataacacaactttgtcttctaacaatgaagcctgtcatatttgtggcaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="52608" stop="48188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52308" g_stop="51999" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51998" i_stop="51014" i_length="985">
            <donor d_prob="0.994" d_score="0.88"/>
            <acceptor a_prob="0.914" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51013" g_stop="50825" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="499" r_length="189" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50824" i_stop="50699" i_length="126">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50698" g_stop="50645" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="553" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49337" g_stop="49227" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="664" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49226" i_stop="48851" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48850" g_stop="48788" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="727" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48787" i_stop="48640" i_length="148">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48639" g_stop="48488" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="877" r_length="150" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E728529" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52308" e_stop="51999"/>
          <exon e_start="51013" e_stop="50825"/>
          <exon e_start="50698" e_stop="50645"/>
          <exon e_start="49337" e_stop="49227"/>
          <exon e_start="48850" e_stop="48788"/>
          <exon e_start="48639" e_stop="48488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAGGTAACCTTATCTATTAGTTTCTGGGAGATTAAGTGAGTAGTTCATCCTTGCAAGGTTTTAAAATGTTGATTGTTGTATGATTGACATCCTCGTAGTTACATTACAAACGTTGTCGTTGGGGATGTCTATTTTAATATTATCGTTTCAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGT</genome_strand>
        <mrna_strand>GACAGATATTTGTAGTTGAAGCACGGCGATACATAACAGCAACGCTGTGTGTACCACTCAATAATCACTTCAAATTGCTAGTGGTAAAATGGCGAGAATGGCTTGCACTCATCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTACCTCAATGGATCTTCTCACCAGTGGTTACGACTCTCACAATCTACTCATCCTGTGGTACTCATCAAAAGGCACTTCTCCGTCGCTAGAATAACCATGAGTTTGCGAGCTGGCATCCTAGGCCTTCCTAATGTCCGCAACTCCACACTGCTCAACGCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATACAGCCAAATGTAAGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGAAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGACGACCATGACTTTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG....................................................................................................................................................GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAA-GATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGC-AATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345635" ref_strand="+" ref_description="SGN-E345635 [cTOF-18-G20]">
      <seq>agatagccgcaacgctgtgtgtaccactcaataagcacttcaacttgctagtggtaaaatggcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgcatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcggcaagtccacgctgttcaacgccgtcgttgagaatggaaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagtcgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcggtcccggcttcgatagagtttgttgatattgctggacttgtaaagggagccagtcaaggggagggcctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaattttctcagatttggatcagattgagaaaagaatggagaaactcanaaaagtagagctaaagattcacaagctaaagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="52578" stop="48490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52278" g_stop="51999" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51998" i_stop="51014" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51013" g_stop="50825" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="469" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50824" i_stop="50699" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50698" g_stop="50645" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="523" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49337" g_stop="49227" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="634" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49226" i_stop="48851" i_length="376">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48850" g_stop="48790" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="694" r_length="60" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E345635" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52278" e_stop="51999"/>
          <exon e_start="51013" e_stop="50825"/>
          <exon e_start="50698" e_stop="50645"/>
          <exon e_start="49337" e_stop="49227"/>
          <exon e_start="48850" e_stop="48790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAA</genome_strand>
        <mrna_strand>AGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAAAGAATGGAGAAACTCANAAAA-GTAGAGCTAAAGATTCACAAGCTAAAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443071" ref_strand="+" ref_description="SGN-E443071 [cSTA-36-K15]">
      <seq>gtgtgtaccactcaataagcacttcaacctgctagtggtaaaatggcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgaatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcgggaagtccacgctgttcaacgccgttgttgagaatggcaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagttgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcagtccctgcttcgatagagtttgttgatattgctgggcttgtaaagggagccagtcaaggggagggcctggggaataagttcttgtcacatattcgtgaagtggactccatacttcaggtagtacgttgttttgaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaattaatattctcagacttggatcagaatgcagattgagaaaagaatggagaaactcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="52562" stop="48522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52262" g_stop="51999" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51998" i_stop="51014" i_length="985">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51013" g_stop="50825" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="453" r_length="189" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50824" i_stop="50699" i_length="126">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50698" g_stop="50645" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="507" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49337" g_stop="49227" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="618" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49226" i_stop="48858" i_length="369">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48857" g_stop="48822" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="654" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E443071" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52262" e_stop="51999"/>
          <exon e_start="51013" e_stop="50825"/>
          <exon e_start="50698" e_stop="50645"/>
          <exon e_start="49337" e_stop="49227"/>
          <exon e_start="48857" e_stop="48822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAGGTACTTGTTACAGTTCTGCTTTACATTTACAGGATGCTAACATAAACTAGGGGTATAGCTCATGGAGATGTATGCAGATAAATGGAGAAAAAAGAGGACATAAGATGCTTTTTATTAAAATGGACTAAATACAGATTCGAATGCATGTGATGATGCTAGTATTGCACGAGAGGTGTATATGAATAATAGCTTTTTACGTACCTATGAAGCATGCATGACAGTCTCATGATGGTGTCAGAAAAATGCACACAAGACAAGGGATGTGGATGATATATTTTTTCTTTTTTTTTCAACAGTAATTTTGTAGTCTTTCTTCTCCTTGTAAAGTTTCTAGGTATGCGAACCAACTAATGACACTAAGTTTACAAGAATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAA</genome_strand>
        <mrna_strand>GTGTGTACCACTCAATAAGCACTTCAACCTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGAATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGGAAGTCCACGCTGTTCAACGCCGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGCAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTTGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCAGTCCCTGCTTCGATAGAGTTTGTTGATATTGCTGGGCTTGTAAAGGGAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTCACATATTCGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATATTCTCAGACTTGGATCAG.................................................................................................................................................................................................................................................................................................................................................................................AATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418913" ref_strand="+" ref_description="SGN-E418913 [STM-28-J1]">
      <seq>gtgtgtaccactcaataagcacttcaacctgctagtggtaaaatggcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgaatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcgggaagtccacgctgttcaacgccgttgttgagaatggcaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagttgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcagtccctgcttcgatagagtttgttgatattgctgggcttgtaaagggagccagtcaaggggagggcctggggaataagttcttgtcacatattcgtgaagtggactccatacttcaagtagtacgttgtttttaggacaatgacattgttcatgtgaatgggaaggttgagccaaaagctgatattgatgtaatcaacttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="52562" stop="48950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52262" g_stop="51999" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51998" i_stop="51014" i_length="985">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51013" g_stop="50825" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="453" r_length="189" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50824" i_stop="50699" i_length="126">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50698" g_stop="50645" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="507" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49337" g_stop="49250" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="595" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E418913" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52262" e_stop="51999"/>
          <exon e_start="51013" e_stop="50825"/>
          <exon e_start="50698" e_stop="50645"/>
          <exon e_start="49337" e_stop="49250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAAT</genome_strand>
        <mrna_strand>GTGTGTACCACTCAATAAGCACTTCAACCTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGAATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGGAAGTCCACGCTGTTCAACGCCGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGCAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTTGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCAGTCCCTGCTTCGATAGAGTTTGTTGATATTGCTGGGCTTGTAAAGGGAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTCACATATTCGTGAAGTGGACTCCATACTTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTTAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367252" ref_strand="+" ref_description="SGN-E367252 [cLPT-5-K18]">
      <seq>ataagcacttcaacttgctagtggtaaaatggcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgcatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcggaaagtccacgctgttcaacgccgttgttgagaatggaaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagtcgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcggtcccggcttcgatagagtttgttgatattgctggacttgtaaagggagccagtcaaggggagggcctggggaataagttcttgtcacatatacgtgaagtggactccatacttcaggtagtacgttgttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="52548" stop="49021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52248" g_stop="51999" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51998" i_stop="51014" i_length="985">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51013" g_stop="50825" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="439" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50824" i_stop="50699" i_length="126">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50698" g_stop="50645" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="493" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49337" g_stop="49321" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="510" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E367252" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52248" e_stop="51999"/>
          <exon e_start="51013" e_stop="50825"/>
          <exon e_start="50698" e_stop="50645"/>
          <exon e_start="49337" e_stop="49321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGA</genome_strand>
        <mrna_strand>ATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGAAAGTCCACGCTGTTCAACGCCGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480435" ref_strand="+" ref_description="SGN-E480435 [cSTD-13-L16]">
      <seq>gcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgaatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcgggaagtccacgctgttcaacgccgttgttgagaatggcaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagttgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcagtccctgcttcgatagagtttgttgatattgctgggcttgtaaagggagccagtcaaggggagggcctggggaataagttcttgtcacatattcgtgaagtggactccatacttcaggtagtacgttgttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="52517" stop="49021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52217" g_stop="51999" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51998" i_stop="51014" i_length="985">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51013" g_stop="50825" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="408" r_length="189" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50824" i_stop="50699" i_length="126">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50698" g_stop="50645" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="462" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49337" g_stop="49321" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="479" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E480435" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52217" e_stop="51999"/>
          <exon e_start="51013" e_stop="50825"/>
          <exon e_start="50698" e_stop="50645"/>
          <exon e_start="49337" e_stop="49321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAGGTTTATATACTTTCTAGTTCCTTTATCATTGTTATCTGTAATCTTGTGTTACGTTGAAGTCCATGTTAGTTCCCAGCCCACTTCCATGGAAGTAATGATGAATCTATAGTCATTTGATCCTGATATAAAAACGAGAGAAAAATATTACATAAAATATAGATCTTGATGTATCCCTTTTTGGTAAGTTGTGAAGAAAAAGTACTCATTTCTAACTATTTTTTAAAAATAAGTTTTTTAATTTTTTAATATAAGTTTTTACATTAATTTTTTAAATAATAATTATAGTTTTTTTATGGTTTCCTTTCCTATTTAGATAGATATTTTTACATTCCATTTTGTTGGAGTATTCCCTAAAATCACTGAAAGTGTGATAAGTATAAAGAGACATTACAGTTTTTTTTATAAAATTATTCAATTTTCAGTTTTCATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTTCATGTAATAGCCATTACTGTTTTTATAAAAAAAGATAGTTCAATTTCATTTTCCCCCTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCATTTTTTGCCGTTACAATTTTTTTTAACAAAAAAACTCTTATTTTCTATTTAAAATAGCTATATTAAAATTCCTGTTTTTTTTAATTTTATTTTTAGAGCATATTTTGAAATGTTTTTTGAAAAATTAAAATTCTTGAATAATTGTGGTGCTGACATGTGACACTTTTTACTTCTCCTAATATATATTAGATAGATTTTTTTTTTAAAAAATAGGCAAACCCACATATTATACCCAGTAAAAAAATTACATTAAGAACTGTAATATGAGCTCCTCCGGTTCTTCAAGAAAATATGTGGGTTCCTCCGATTATTTAAAAGAATTAGAAAAATATTAATAACAAGTTAGAAAATATGACATGGCATCCCACTAAGAGAGAAATAATGTATTTTTTTGTGTCAAAGTTGGGTGATATTGTAGTCCTAAAACAAACACAAGTGATATTCCTAGATAATTTCTCTAACATGGGTGACTATCTAGGGAAATTACTCGATTTAATACTTCAATTGCATTTCAAATATGAAAATAATCATTCCAAGGCCTTTTTTTTCTCTTTTGAGTTGTAAGGCTTTATTTTGCTGTTATATTGCATCCTAGCTTATGAGCATGTAAAGACTAAAGAGAAGGAAGAGTGCCCCATCAGTTTGCTTTGAGTTCCTTACTGATTTAAAAAATTTTCTGTCATACATTTTCTGTTGTTGCTTGCTGAAAGTGCTTTTGTGTACTATTTTAGGTAGTACGTTGTTTTGA</genome_strand>
        <mrna_strand>GCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGAATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGGAAGTCCACGCTGTTCAACGCCGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGCAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTTGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCAGTCCCTGCTTCGATAGAGTTTGTTGATATTGCTGGGCTTGTAAAGGGAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTCACATATTCGTGAAGTGGACTCCATACTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTACGTTGTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484695" ref_strand="+" ref_description="SGN-E484695 [cSTE-14-K8]">
      <seq>cggcgatagatagccgcaacgctgtgtgtaccactcaataagcacttcaacctgctagtggtaaaatggcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgaatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcgggaagtccacgctgttcaacgccgttgttgagaatggaaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagttgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcagtccctgcttcgatagagtttgttgatattgctgggcttgtaaagggagccagtcaaggggagggcctggggaataagttcttgtccatattcgtgaagtggactccatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="52585" stop="50349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52285" g_stop="51999" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51998" i_stop="51014" i_length="985">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51013" g_stop="50825" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="476" r_length="189" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50824" i_stop="50699" i_length="126">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50698" g_stop="50649" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="525" r_length="49" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E484695" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52285" e_stop="51999"/>
          <exon e_start="51013" e_stop="50825"/>
          <exon e_start="50698" e_stop="50649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAGGTTTATTCTCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACT</genome_strand>
        <mrna_strand>CGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACCTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGAATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGGAAGTCCACGCTGTTCAACGCCGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTTGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCAGTCCCTGCTTCGATAGAGTTTGTTGATATTGCTGGGCTTGTAAAGGGAGCCAGTCAAGGGGAG..............................................................................................................................GGCCTGGGGAATAAGTTCTTGTC-CATATTCGTGAAGTGGACTCCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729044" ref_strand="+" ref_description="SGN-E729044 [LA19DB10]">
      <seq>gagaatatttgtagttgtagcacggcgatagatagccgcaacgctgtgtgtaccactcaataagcacttcaacttgctagtggtaaaatggcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgcatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcggcaagtccacgctgttcaacgccgtcgttgagaatggaaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagtcgctgtccctgatacacgtctccatgttctttctgatataagcaaatccaaacgagcggtcccggcttcgatagagtttgctgatattgctggacttgtatatggagccaatcaaggggagggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="52608" stop="50524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52308" g_stop="51999" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51998" i_stop="51014" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51013" g_stop="50825" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="498" r_length="189" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E729044" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52308" e_stop="51999"/>
          <exon e_start="51013" e_stop="50825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG</genome_strand>
        <mrna_strand>GAGAA-TATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGCTGATATTGCTGGACTTGTATATGGAGCCAATCAAGGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253197" ref_strand="+" ref_description="SGN-E253197 [cLEG-26-F11]">
      <seq>ttgtttcattttcccaaatttttgggctcaaataccaattttggtgccattatttgggtaattttcgaatttaccatgtagcgtcgtcgctgagttaaacccgagaaatatttgtagttgtagcacggcgatagatagccgcaacgctgtgtgtaccactcaataagcaccttcaacttgctagtggtaaaatggcgagaatggcttgctctcagcttcttccttccatggcaattccgctcaagtcttctttcctcaatggttcttctcaccagtggttacgactctcagaatctacgcatcctgtggtactcatcaaaaggcgcttctccgtcgctaagataagcatgagtttgcgagctggcatcgttggccttcctaatgtcggcaagtccacgctgttcaacgccgtcgttgagaatggaaaggctcaggctgctaattttcctttttgcacaatagagccaaatgtagggatagtcgctgtccctgatacacgtctccatgttctttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="52708" stop="50610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52408" g_stop="51999" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51998" i_stop="51014" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51013" g_stop="50910" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="517" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E253197" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52408" e_stop="51999"/>
          <exon e_start="51013" e_stop="50910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCATTTTCCCAAATTTTTGGGCTCAAATA-CAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTA-CATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCA-CTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTCGTAAGTCTATTTTCACAATATATTTTCTTCTGCAAAGACGCAATTGAATGCTTACCCCATATATTTGTAGAAATGCCGATAGTCTTGCAATTGAAGCTCAGAAAATGGACGTGGAAGCTTAATAATTTAACTACAAGTATGAGTGTGTAGTGAGTTAGATGTTTACTGGAGTGTAAGTATAGTTACTGGTCCTTCTGTCAGAAGGAATTGAAGGTAGATGCTGTTAATTTAAAATTGGATAGCTCTTAAACTGGAAAAGCACAACCCGTAGGAAACTAATGGAAAATTGATGTTGCATATTTTTTTAGATGCTTTTCGAGAGCCGAATTGTTGTACATCTCTTTGATAAATGCATAGTGCATATCTGTATGGAGGATGTTATTCACTAGTTAAAGAGACTGTAACTGAGGTTTTGAGTTGATGAACGTGTTACTAGTAATACATGCCGGGGCAAACCATAATTTCCTTGGGAGGTTGATTTTGTGTAATTCCTAGATGCTTCTCCAATATCCAATATTATGCATACTACATCTATATGAATGATGTTATTAGTTCTACATGTTGGGGAAAAGAAATCATAAAAAATCGTATTACTGAATAATTTGTGTGTTCAGTGCAAGTGTAAACCAGAAAAATGGTAATTGTTGTGCTTCTTCTTGTTATGGTTGTCGATGTAGATCACCACTGTATCTTAAACTTCAGGTATCTTTGAAACCCTCTAGCATTAACTGACAGAATGGGTTACGTGTTCAACAGTTTTGAAGTTTTTGTTTGCTAGCAGGTGTCAGCTACATATGTACTATTAATCTGTTACTATGGTCCATTCTCCATGTATTCCAGTCTAAAAGGCTAAAAAATGGTAGCATATGCTGGAAACTTGACATTGTATTGTTGTAGTTTGCTGTCAAATAACTCCTTTGATTATTCTGCTTGTATGTTTGCTGTTGGTCACATGCCCTTATAGCCATTGCCAATATTCTTGCAGGTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGA</genome_strand>
        <mrna_strand>TTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACCAATTTTGGTGCCATTATTTGGGTAATTTTCGAATTTACCATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACCTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598709" ref_strand="+" ref_description="SGN-E598709 [51681]">
      <seq>ctttaattgatgatcgaaggatacatgttgatttcagccagagtgttgcaaagttgtggtcccaatatcgacgcaaagaccaaacgggtaaaggaagaggttgcttcaaatgtggttctcttgatcatgtggctaaagactgcactggtgatgccaccaaacagcagtcgaactacatacttaaggaagaagacaacaagcagcgtggtggagacggtaactcaaggtatgaaatggtatttgatgaagatgctgctggaagtccaaaaagaaataagagggaaagagaatttgaaggtggaaaacattacgagaatcagaatcctaaacgtagagaactggaagatgatgaagccaggaaggatagaaaaagagatggatatgaacggcataggcaggaggatagaagtaacgattatagaactgaagagaggcatcgtggaagtgggatgagagcaagtggagagaaggagaaggattataggggtcgaaacgatctggattatagaagaaacactaattatgataaccgtaaggctgggggggagagaccagaccatgataagagacatgcggataatgtgaggcatggagacaagggttatcggagggagagtgaaaagagggatcggagagatgaggtggaatatgatggcggtcatgcagatgaagttaggtacaaaggacaattcacaggaatagaggaagaagggaagatcagatagaggaaaacgaaggtcagagggtgatgatgctcgtgaccgtggaccgtgaacgtgaccgtgaccatgaccgtgatcatgaccgtcgtccgtgatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="55686" stop="52822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55386" g_stop="55294" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55293" i_stop="53930" i_length="1364">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53929" g_stop="53797" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="226" r_length="133" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53796" i_stop="53706" i_length="91">
            <donor d_prob="0.216" d_score="0.90"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53705" g_stop="53109" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="820" r_length="594" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E598709" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55386" e_stop="55294"/>
          <exon e_start="53929" e_stop="53797"/>
          <exon e_start="53705" e_stop="53109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAATTGATGATCGAAGGATACATGTTGATTTCAGCCAGAGTGTTGCAAAGTTGTGGTCCCAATATCGACGCAAAGACCAAACGGGTAAAGGTAAGCTGTGCACATCTTGTAATGTGGTTCGTCTATCAATTTTGAATGAAATTAATTTGTATTAGAAACTGAATGCTATAGCTTATTAAACTGAATGCAAGATGATGTCATCAGATTATATGACGGTTTGTATTTGATATCAAATACTTTGCTCATATGTGCAGATGTTAGCTTATTGGAATTTGATCTTTTTAGGATCACATTTCATTTTATATTTACTGTTTATACTTCTATTCAGTGTCATGAATCATTATTATGTCATTTGATCCCCCAAAATTAATTACTGTTTCAGTTTAATTTTTCTGGTATGATAAAATTACTGTTTCAGTTGGGGTGACCAATTGACAGATTATGTTTCTTAAATGTAACTTAACAGGTTATCCTATTGGAACTTTTTCCTCGAGGTTGCTAAATAGGGTGATAGATTGGTTCTTCTTTTGATAGGTAAAAAGTAAGTCTTTTAAACGGATCTCAGTACCAAGATTGTACCGTACAGTACAAAAACATGCTGAGTAGAAATCCTCTTATAGCTGTGAGGATTCCAAAATTCCAGCATTACATCAACATCAAAAGCAAAGTCAGCATTACACCATAATTCTAACTCTGAATACATGTGCTTTTAACTAAAACAATATTCTCTTCCTTCCCTTCAAAGCATCTTCGATTTCTCTCTTCTGACTAAACAGTCCACATTATGCACAATGGAATTGTCTTCCAGATCTTCCAGACTTTCCAGACATTCTTCTCCTCCTTTTTCAAACTCTGGTTTTGCCACCTACAGAGGGCTTGCTTCACATTGGCTTGACATAGCCCACTGAATTCCGTAAGACTATGGAACATCTGAATATACATCAAATATGCCACTTGAAATAGCAGTGTGGTAGCAGGCGATCGACTGTCTCACCATCTTTTTGCAAGTTTAGGTCCAGCTACAAAAGTTAAAACCTCTTCTTTGTAATTTTTCTTGCGTCAAACAGTGCATGTGCTGCAACCCATCTAATAGAAGCTACTCTAATAGGAGCTTTGATTTCTAAATTATTTGTCCATGGTAGCACCATCCCGAGCCGCATTCCTCGTCAGAGACTGATAACAAGATTTCACATAGAAGTTCTTGATTAAAAAAAAAATCACATAAAAGTTCTCATCTCTGCTACCTTTCCAGCATATCCCTGTAAGCTTGCCAGCGAAATGTTCCCCACAATCTCAAGTAAAATATCATGCGAACTATGTATAACGACTTTATTGTTTTAAAGTAGTTCCAGCATCTTTTATGTGTATCTGCACATTTAGAACATATGGTAGCAAGCAACATTGTTGCAGCCCCTGCCAAATTAGATCTGATCAATGGTATTTATTTATTTCAGGAAGAGGTTGCTTCAAATGTGGTTCTCTTGATCACATGGCTAAAGACTGCACTGGTGATGCCACCAAACAGCAGTCGAACTACATTCTAAAAGAAGAAGACAACAAGCAGCACGGTGGAGACGGTAACTCAAGGTTAGCAGGAACAAACAGCCCACGCCTCATTCCTCCTGTTTTTCTCTCTAAAACCTCCTTTTTTAAAACTCTTCTGAACATTTAATTCAAGGTATGAGATGGTATTTGATGAAGATGCTGCTGGAAGTCCAAAAAGAAATAAGAGGGGAAGAGAATTTGAAGGTGGAAAACATTACGAGAATCAGAATCCTAAACGTAGAGAACTTGAAGATGATGGAGCCAGGAAGGATAGAAAAAGAGATGGATATGAACGGCATAGGCTGGAGGATAGAAGTAATGATTATAGAACTGAAGAGAGGCATCGTGGAAGTGGGATGAGAGCAAGTGGAGAGAAGGAAAGGGATTACAGGGGTCGGAACGATCTGGATTATAGAAGAAACACTAATTATGATAACCGTAAGGCTGGGGGGGAGAGACAAGACCATGATAAGAGACCTGCGGATAATGTGAGGCATGTGGACAAGGATTATCGGGGGGAGAGAGAAAAGAGGGATCGGAGAGATGAGGTGGAATATGATGGTGGTCATGCAGATGAAGTTAGGTACAAA-GACAATTCACA-GAATAGAGGAAGAGGGGAAGAGCAAGATAGAGGAAAACGAAGGTCAGAGGGTGATGATGCTCGTGCTCGTGACCGTGACCGTGATCGCTACCGTGATCATGACCGTCGTCGTGATCGACCT-CGTGACCA</genome_strand>
        <mrna_strand>CTTTAATTGATGATCGAAGGATACATGTTGATTTCAGCCAGAGTGTTGCAAAGTTGTGGTCCCAATATCGACGCAAAGACCAAACGGGTAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGTTGCTTCAAATGTGGTTCTCTTGATCATGTGGCTAAAGACTGCACTGGTGATGCCACCAAACAGCAGTCGAACTACATACTTAAGGAAGAAGACAACAAGCAGCGTGGTGGAGACGGTAACTCAAG...........................................................................................GTATGAAATGGTATTTGATGAAGATGCTGCTGGAAGTCCAAAAAGAAATAAGAGGGAAAGAGAATTTGAAGGTGGAAAACATTACGAGAATCAGAATCCTAAACGTAGAGAACTGGAAGATGATGAAGCCAGGAAGGATAGAAAAAGAGATGGATATGAACGGCATAGGCAGGAGGATAGAAGTAACGATTATAGAACTGAAGAGAGGCATCGTGGAAGTGGGATGAGAGCAAGTGGAGAGAAGGAGAAGGATTATAGGGGTCGAAACGATCTGGATTATAGAAGAAACACTAATTATGATAACCGTAAGGCTGGGGGGGAGAGACCAGACCATGATAAGAGACATGCGGATAATGTGAGGCATGGAGACAAGGGTTATCGGAGGGAGAGTGAAAAGAGGGATCGGAGAGATGAGGTGGAATATGATGGCGGTCATGCAGATGAAGTTAGGTACAAAGGACAATTCACAGGAATAGAGGAAGAAGGGAAGATC-AGATAGAGGAAAACGAAGGTCAGAGGGTGATGATGCTCGTGACCGT----G-GACCGTGAACGTGACCGTGACCATGACCGTGATCATGACCGTCGTCCGTGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478992" ref_strand="+" ref_description="SGN-E478992 [cSTD-8-E1]">
      <seq>gtttagggaaagaagaagcaaacctagcactcataaaacagagccactgttcttctttacccagaggagctatcaagatgattactggcggaagaagtttgatttcttcacagccggcgttttcaaatgatgcgaagaagcttctcgtatgcacaggaaacaccgtttctatttttagcacctccactggcttacagattgctgaattggaaggtcataagggattggtaacatcggtggtggtagtaccatctactactccggcaggcaaactattgtgctactgctggacatcatctgaggatggtactattaaatattgggacttttcggtgccggagctgatgaaaagtattgatgttaagttgcccattcactcaatggtaattccaggtttatcatcacaactcagagagagtagcgaaaagccttctgatctttttgcatatgtgtctgtcatagtgttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="64823" stop="66721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65120" g_stop="65316" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65317" i_stop="65404" i_length="88">
            <donor d_prob="0.590" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65405" g_stop="65590" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="383" r_length="186" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65591" i_stop="66335" i_length="745">
            <donor d_prob="0.729" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66336" g_stop="66421" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="469" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E478992" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65120" e_stop="65316"/>
          <exon e_start="65405" e_stop="65590"/>
          <exon e_start="66336" e_stop="66421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATTGAAAGAAGAAGCAAACCTAACACTCATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAGGTTCAGTTTACGTTTGCGACAAACTCAACAGCTAAAATAAATTCACTGTATAAGTTAATGTAAGTAGTTAATTTTGTAATTCTTACAGATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATGGTAAACAGCTTTTTACTTTTAAGAGTGCCTCAACGTGGATTAGGCAGTGCTTTGCACCTTCTGTGACATAAATTCCAGATGTAGTTATACATTGTATATAGCTACCTCAAGCACCTCCACTGTTCCTTGGGTACCTCCTACCAAGGCCTAGACGGTTGGGTAAAAAAGGCATCCTCTTTTGCCTCCGTTTAGTATCTAAATCTGGAATCATTATTATATCAATTCTAAAGTTGAGAATTTTATGTTTTGGACTTCTCAAGAAAATATTGATTTTACTGAAAAATAATAATATAGTAACTGAAATTACAAGGAGAAAACGGACTGTTAAAGGGAATAGGATCTAGCTTCAGGTGATTCAGGTGTTAGTGATGCTCTAATTTGCTAAATAAATGCCATGCCAAAGGCATGGGAATTTCTGAACTATATTTGGGCATGCACACAAGTATTTGGATGGTACAGAATGAGTAGTAGTTAGCTTGAGATCTTTTCCTACTTGAGGAAATGATAGTTGTCTAGATACCAGGAATGTGGGACTAGATTCCCGGAAGAACTCACAAATTGCACTATGCACTAACAAAGTAACAACCCGTCAAGACGGAGCCATTTTCCAGCTTCGCCTCTGCTGTTGTTTTATGTTGTTCACTAAGTACTACTCACGTGTAGCAACATCTCTTTCTCAAACTTTGTGTTTGACATTGCACTTTGCAGCATAACTATCTTATCATGCCTCTTTCCTCTTTATCAGGTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAA</genome_strand>
        <mrna_strand>GTTTAGGGAAAGAAGAAGCAAACCTAGCACTCATAAAACAGAGCCACTGTTCTTCTTTACCCAGAGGAGCTATCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCGAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACTGGCTTACAG........................................................................................ATTGCTGAATTGGAAGGTCATAAGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACATCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCGGTGCCGGAGCTGATGAAAAGTATTGATGTTAAGTTGCCCATTCACTCAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTCCAGGTTTATCATCACAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604215" ref_strand="+" ref_description="SGN-E604215 [74348]">
      <seq>gaaagaagaagcaaacctaacactcataaaacagagccactgttcttctttacgcagaggagctatcaagatgattactggcggaagaagtttgatttcttcacagccggcgttttcaaatgatgcgaagaagcttctcgtatgcacaggaaataccgtttctatttttagcacctccactggcttacagattgctgaattggaaggtcataggggattggtaacatcggtggtggtagtaccatctactactccggcaggcaaactattgtgctactgctggacatcatctgaggatggtactattaaatattgggacttttcggtgccggagctgatgagaagtattgatgttaagttgcccattcactcaatggttattccaggtttatcatcacaacccagagagagtagcgaaaagccttctgatctttttgcatatgtgtctgtcatagtgttgaaagaacagctgggaggaagttgtgctttatggtggcagataaggaagtgtaacttaaccaaatctactttggttggtggagcgactctggctgagagtaaaaacacactatctataacattaagctgctctggaagatacatgggcgtctgtgacaagcgcaagcttcgcatttgggaaataccaactacagattctgatcattcagtgcttcagaacatcagattacatcatacggaaaagcctgagcactctaggctttcatccaacagatagaatagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="64827" stop="67745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65127" g_stop="65316" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65317" i_stop="65404" i_length="88">
            <donor d_prob="0.590" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65405" g_stop="65590" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="376" r_length="186" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65591" i_stop="66335" i_length="745">
            <donor d_prob="0.729" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66336" g_stop="66515" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="556" r_length="180" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66516" i_stop="67259" i_length="744">
            <donor d_prob="0.955" d_score="0.94"/>
            <acceptor a_prob="0.124" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67260" g_stop="67445" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="743" r_length="187" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E604215" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65127" e_stop="65316"/>
          <exon e_start="65405" e_stop="65590"/>
          <exon e_start="66336" e_stop="66515"/>
          <exon e_start="67260" e_stop="67445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGAAGCAAACCTAACACTCATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAGGTTCAGTTTACGTTTGCGACAAACTCAACAGCTAAAATAAATTCACTGTATAAGTTAATGTAAGTAGTTAATTTTGTAATTCTTACAGATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATGGTAAACAGCTTTTTACTTTTAAGAGTGCCTCAACGTGGATTAGGCAGTGCTTTGCACCTTCTGTGACATAAATTCCAGATGTAGTTATACATTGTATATAGCTACCTCAAGCACCTCCACTGTTCCTTGGGTACCTCCTACCAAGGCCTAGACGGTTGGGTAAAAAAGGCATCCTCTTTTGCCTCCGTTTAGTATCTAAATCTGGAATCATTATTATATCAATTCTAAAGTTGAGAATTTTATGTTTTGGACTTCTCAAGAAAATATTGATTTTACTGAAAAATAATAATATAGTAACTGAAATTACAAGGAGAAAACGGACTGTTAAAGGGAATAGGATCTAGCTTCAGGTGATTCAGGTGTTAGTGATGCTCTAATTTGCTAAATAAATGCCATGCCAAAGGCATGGGAATTTCTGAACTATATTTGGGCATGCACACAAGTATTTGGATGGTACAGAATGAGTAGTAGTTAGCTTGAGATCTTTTCCTACTTGAGGAAATGATAGTTGTCTAGATACCAGGAATGTGGGACTAGATTCCCGGAAGAACTCACAAATTGCACTATGCACTAACAAAGTAACAACCCGTCAAGACGGAGCCATTTTCCAGCTTCGCCTCTGCTGTTGTTTTATGTTGTTCACTAAGTACTACTCACGTGTAGCAACATCTCTTTCTCAAACTTTGTGTTTGACATTGCACTTTGCAGCATAACTATCTTATCATGCCTCTTTCCTCTTTATCAGGTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAGGTATGCAAAATTGTCTTCCATGCCTTCTCTTTTTACAGGGAAGAAAAAGTGTCTGTTGATTGTTATTTTTGCAGTAAGTACAACAACTTCTTACCTAGTGTAATATTACACAAGTGGCGTTTGGGGAGGGTGATGTGTACACAACCTTACCCTTACCTTGTAAAGGTAGAGAGGTTGTTTCTGATAGACCCTTGGCTCAAAGAAAGCATATCAAAAGATGGCTCCATGTAAAAAACCGGTTAGGTCTAAAACAGTAGATCATTGTTGAATTGTTTAAATTGTAACCAGTGTTTCATTACTTTAGAGCTTTCAAATTTTGATTGTGCCAAATAGAAAATTTATTGCAAAAGGCATAGGCTTTATTTAAAAACTTTTTTGTTAAATCAGCATGAAGATCCCCCTTTTCCATTTCTTTATCAGATCCATCTGTGAATAAAATTTCATCTATCCTACATAAGAAATATATCACACCAACTAATGTTATCAATTTTGCAAGTGTTTTCCGGGGTAAAAGATATGGTTTCAGGTTGAACTCTCTCTAGCTTGATGAAAAGTTGTCTGAGCTATCTTTTGCTTCTAGATCGTTCACACCGTTAGTCACTATCAGAAAGGTGTTGATGATCTTTCACATCATTGCATTTGCCACTGTCAAATATTTACCTACCTTATTTTGCAAAGTAAATGCACATAATAGCATTTTTGTATGCGATAAAAAATAAGCAAGGATTATAACTTTCTCTCCAGAGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATACCAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATAC-GAAAACCCTGAGCACTCTAGCTTTTCATCCAACAGATAGAATAGTT</genome_strand>
        <mrna_strand>GAAAGAAGAAGCAAACCTAACACTCATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTATCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCGAAGAAGCTTCTCGTATGCACAGGAAATACCGTTTCTATTTTTAGCACCTCCACTGGCTTACAG........................................................................................ATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACATCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCGGTGCCGGAGCTGATGAGAAGTATTGATGTTAAGTTGCCCATTCACTCAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCCAGGTTTATCATCACAACCCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGAAGTTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACCAAATCTACTTTGGTTGGTGGAGCGACTCTGGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAACACACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATACCAACTACAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGGAAAAGCCTGAGCACTCTAGGCTTTCATCCAACAGATAGAATAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316880" ref_strand="+" ref_description="SGN-E316880 [cTOA-27-G22]">
      <seq>taacactcataaaacagagccactgttcttctttacgcagaggagctagcaagatgattactggcggaagaagtttgatttcttcacagccggcgttttcaaatgatgcaaagaagcttctcgtatgcacaggaaacaccgtttctatttttagcacctccacaggcttacagattgctgaattggaaggtcataggggattggtaacatcggtggtggtagtaccatctactactccggcaggcaaactattgtgctactgctggacttcatctgaggatggtactattaaatattgggacttttccgtgccggagctaatgagaagtattgatgttaagttgcccatttactcaatggtaattccaggtttatcatcagaactcagagagagtagcgaaaagccttctgatctttttgcatatgtgtctgtcatagtgttgaaagaacagctgggagggagctgtgctttatggtggcagataaggaagtgtaacttaactaaatgtactttggttggtggagtgactctggctgagagtaaaaacgcactatctataacattaagctgctctggaagatacatgggcgtctgtgacaagcgcaagcttcgcatttgggaaatacaactaaagattctgatcattcagtgcttcagaacatcagattacatcatacgaaaaccctgagcactctagcttttcatccacagatagaatagtttcagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="64844" stop="67753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65144" g_stop="65316" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65317" i_stop="65404" i_length="88">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65405" g_stop="65590" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="359" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65591" i_stop="66335" i_length="745">
            <donor d_prob="0.729" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66336" g_stop="66515" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="539" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66516" i_stop="67259" i_length="744">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.124" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67260" g_stop="67453" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="731" r_length="192" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E316880" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65144" e_stop="65316"/>
          <exon e_start="65405" e_stop="65590"/>
          <exon e_start="66336" e_stop="66515"/>
          <exon e_start="67260" e_stop="67453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTCATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAGGTTCAGTTTACGTTTGCGACAAACTCAACAGCTAAAATAAATTCACTGTATAAGTTAATGTAAGTAGTTAATTTTGTAATTCTTACAGATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATGGTAAACAGCTTTTTACTTTTAAGAGTGCCTCAACGTGGATTAGGCAGTGCTTTGCACCTTCTGTGACATAAATTCCAGATGTAGTTATACATTGTATATAGCTACCTCAAGCACCTCCACTGTTCCTTGGGTACCTCCTACCAAGGCCTAGACGGTTGGGTAAAAAAGGCATCCTCTTTTGCCTCCGTTTAGTATCTAAATCTGGAATCATTATTATATCAATTCTAAAGTTGAGAATTTTATGTTTTGGACTTCTCAAGAAAATATTGATTTTACTGAAAAATAATAATATAGTAACTGAAATTACAAGGAGAAAACGGACTGTTAAAGGGAATAGGATCTAGCTTCAGGTGATTCAGGTGTTAGTGATGCTCTAATTTGCTAAATAAATGCCATGCCAAAGGCATGGGAATTTCTGAACTATATTTGGGCATGCACACAAGTATTTGGATGGTACAGAATGAGTAGTAGTTAGCTTGAGATCTTTTCCTACTTGAGGAAATGATAGTTGTCTAGATACCAGGAATGTGGGACTAGATTCCCGGAAGAACTCACAAATTGCACTATGCACTAACAAAGTAACAACCCGTCAAGACGGAGCCATTTTCCAGCTTCGCCTCTGCTGTTGTTTTATGTTGTTCACTAAGTACTACTCACGTGTAGCAACATCTCTTTCTCAAACTTTGTGTTTGACATTGCACTTTGCAGCATAACTATCTTATCATGCCTCTTTCCTCTTTATCAGGTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAGGTATGCAAAATTGTCTTCCATGCCTTCTCTTTTTACAGGGAAGAAAAAGTGTCTGTTGATTGTTATTTTTGCAGTAAGTACAACAACTTCTTACCTAGTGTAATATTACACAAGTGGCGTTTGGGGAGGGTGATGTGTACACAACCTTACCCTTACCTTGTAAAGGTAGAGAGGTTGTTTCTGATAGACCCTTGGCTCAAAGAAAGCATATCAAAAGATGGCTCCATGTAAAAAACCGGTTAGGTCTAAAACAGTAGATCATTGTTGAATTGTTTAAATTGTAACCAGTGTTTCATTACTTTAGAGCTTTCAAATTTTGATTGTGCCAAATAGAAAATTTATTGCAAAAGGCATAGGCTTTATTTAAAAACTTTTTTGTTAAATCAGCATGAAGATCCCCCTTTTCCATTTCTTTATCAGATCCATCTGTGAATAAAATTTCATCTATCCTACATAAGAAATATATCACACCAACTAATGTTATCAATTTTGCAAGTGTTTTCCGGGGTAAAAGATATGGTTTCAGGTTGAACTCTCTCTAGCTTGATGAAAAGTTGTCTGAGCTATCTTTTGCTTCTAGATCGTTCACACCGTTAGTCACTATCAGAAAGGTGTTGATGATCTTTCACATCATTGCATTTGCCACTGTCAAATATTTACCTACCTTATTTTGCAAAGTAAATGCACATAATAGCATTTTTGTATGCGATAAAAAATAAGCAAGGATTATAACTTTCTCTCCAGAGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATACCAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGAAAACCCTGAGCACTCTAGCTTTTCATCCAACAGATAGAATAGTTTCAGCTGG</genome_strand>
        <mrna_strand>TAACACTCATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAG........................................................................................ATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATA-CAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGAAAACCCTGAGCACTCTAGCTTTTCATCC-ACAGATAGAATAGTTTCAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444032" ref_strand="+" ref_description="SGN-E444032 [cSTA-41-I21]">
      <seq>cactcataaaacagagccactgttcttctttacccagaggagctatcaagatgattactggcggaagaagtttgatttcttcacagccggcgttttcaaatgatgcgaagaagcttctcgtatgcacaggaaacaccgtttctatttttagcacctccactggcttacagattgctgaattggaaggtcataggggattggtaacatcggtggtggtagtaccatctactaatccggcaggcaaactattgtgctactgctggacatcatctgaggatggtactattaaatattgggacttttcggtgccggagctgatgagaagtattgatgttaagttgcccattcactcaatggtaattccaggtttatcatcacaactcagagagagtagcgaaaagccttctgatctttttgcatatgtgtctgtcatagtgttgaaagaacagctgggaggaagttgtgctttatggtggcagataaggaagtgtaacttaactaaatctactttggttggtggagtgactctggctgagagtaaaaacgcactatctataacattaagctgctctggaagatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="64847" stop="67606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65147" g_stop="65316" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65317" i_stop="65404" i_length="88">
            <donor d_prob="0.590" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65405" g_stop="65590" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="356" r_length="186" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65591" i_stop="66335" i_length="745">
            <donor d_prob="0.729" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66336" g_stop="66515" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="536" r_length="180" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66516" i_stop="67259" i_length="744">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.124" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67260" g_stop="67306" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="583" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E444032" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65147" e_stop="65316"/>
          <exon e_start="65405" e_stop="65590"/>
          <exon e_start="66336" e_stop="66515"/>
          <exon e_start="67260" e_stop="67306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAGGTTCAGTTTACGTTTGCGACAAACTCAACAGCTAAAATAAATTCACTGTATAAGTTAATGTAAGTAGTTAATTTTGTAATTCTTACAGATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATGGTAAACAGCTTTTTACTTTTAAGAGTGCCTCAACGTGGATTAGGCAGTGCTTTGCACCTTCTGTGACATAAATTCCAGATGTAGTTATACATTGTATATAGCTACCTCAAGCACCTCCACTGTTCCTTGGGTACCTCCTACCAAGGCCTAGACGGTTGGGTAAAAAAGGCATCCTCTTTTGCCTCCGTTTAGTATCTAAATCTGGAATCATTATTATATCAATTCTAAAGTTGAGAATTTTATGTTTTGGACTTCTCAAGAAAATATTGATTTTACTGAAAAATAATAATATAGTAACTGAAATTACAAGGAGAAAACGGACTGTTAAAGGGAATAGGATCTAGCTTCAGGTGATTCAGGTGTTAGTGATGCTCTAATTTGCTAAATAAATGCCATGCCAAAGGCATGGGAATTTCTGAACTATATTTGGGCATGCACACAAGTATTTGGATGGTACAGAATGAGTAGTAGTTAGCTTGAGATCTTTTCCTACTTGAGGAAATGATAGTTGTCTAGATACCAGGAATGTGGGACTAGATTCCCGGAAGAACTCACAAATTGCACTATGCACTAACAAAGTAACAACCCGTCAAGACGGAGCCATTTTCCAGCTTCGCCTCTGCTGTTGTTTTATGTTGTTCACTAAGTACTACTCACGTGTAGCAACATCTCTTTCTCAAACTTTGTGTTTGACATTGCACTTTGCAGCATAACTATCTTATCATGCCTCTTTCCTCTTTATCAGGTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAGGTATGCAAAATTGTCTTCCATGCCTTCTCTTTTTACAGGGAAGAAAAAGTGTCTGTTGATTGTTATTTTTGCAGTAAGTACAACAACTTCTTACCTAGTGTAATATTACACAAGTGGCGTTTGGGGAGGGTGATGTGTACACAACCTTACCCTTACCTTGTAAAGGTAGAGAGGTTGTTTCTGATAGACCCTTGGCTCAAAGAAAGCATATCAAAAGATGGCTCCATGTAAAAAACCGGTTAGGTCTAAAACAGTAGATCATTGTTGAATTGTTTAAATTGTAACCAGTGTTTCATTACTTTAGAGCTTTCAAATTTTGATTGTGCCAAATAGAAAATTTATTGCAAAAGGCATAGGCTTTATTTAAAAACTTTTTTGTTAAATCAGCATGAAGATCCCCCTTTTCCATTTCTTTATCAGATCCATCTGTGAATAAAATTTCATCTATCCTACATAAGAAATATATCACACCAACTAATGTTATCAATTTTGCAAGTGTTTTCCGGGGTAAAAGATATGGTTTCAGGTTGAACTCTCTCTAGCTTGATGAAAAGTTGTCTGAGCTATCTTTTGCTTCTAGATCGTTCACACCGTTAGTCACTATCAGAAAGGTGTTGATGATCTTTCACATCATTGCATTTGCCACTGTCAAATATTTACCTACCTTATTTTGCAAAGTAAATGCACATAATAGCATTTTTGTATGCGATAAAAAATAAGCAAGGATTATAACTTTCTCTCCAGAGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACAT</genome_strand>
        <mrna_strand>CACTCATAAAACAGAGCCACTGTTCTTCTTTACCCAGAGGAGCTATCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCGAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACTGGCTTACAG........................................................................................ATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTAATCCGGCAGGCAAACTATTGTGCTACTGCTGGACATCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCGGTGCCGGAGCTGATGAGAAGTATTGATGTTAAGTTGCCCATTCACTCAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTCCAGGTTTATCATCACAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGAAGTTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATCTACTTTGGTTGGTGGAGTGACTCTGGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446836" ref_strand="+" ref_description="SGN-E446836 [cSTA-23-O1]">
      <seq>cataaaacttagccactgttcttctttacccagaggagctatcaagatgattactggcggaagaagtttgatttcttcacagccggcgttttcaaatgatgcgaagaagcttctcgtatgcacaggaaacaccgtttctatttttagcacctccactggcttacagattgctgaattggaaggtcataggggattggtaacatcggtggtggtagtaccatctactaatccggcaggcaaactattgtgctactgctggacatcatctgaggatggtactattaaatattgggacttttcggtgccggagctgatgagaagtattgatgttaagttgcccattcactcaatggtaattccaggtttatcatcacaactcagagagagtagcgaaaagccttctgatctttttgcatatgtgtctgtcatagtgttgaaagaacagctgggaggaagttgtgctttatggtggcagataaggaagtgtaacttaactaaatctactttggttggtggagtgactctggctgagagtaaaaacgcactatctataacattaagctgctctggaagatacatgggcgtctgtgacaagcgcaagcttcgcatttgggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="64851" stop="67645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65151" g_stop="65316" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65317" i_stop="65404" i_length="88">
            <donor d_prob="0.590" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65405" g_stop="65590" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="352" r_length="186" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65591" i_stop="66335" i_length="745">
            <donor d_prob="0.729" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66336" g_stop="66515" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="532" r_length="180" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66516" i_stop="67259" i_length="744">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.124" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67260" g_stop="67345" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="618" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E446836" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65151" e_stop="65316"/>
          <exon e_start="65405" e_stop="65590"/>
          <exon e_start="66336" e_stop="66515"/>
          <exon e_start="67260" e_stop="67345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAGGTTCAGTTTACGTTTGCGACAAACTCAACAGCTAAAATAAATTCACTGTATAAGTTAATGTAAGTAGTTAATTTTGTAATTCTTACAGATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATGGTAAACAGCTTTTTACTTTTAAGAGTGCCTCAACGTGGATTAGGCAGTGCTTTGCACCTTCTGTGACATAAATTCCAGATGTAGTTATACATTGTATATAGCTACCTCAAGCACCTCCACTGTTCCTTGGGTACCTCCTACCAAGGCCTAGACGGTTGGGTAAAAAAGGCATCCTCTTTTGCCTCCGTTTAGTATCTAAATCTGGAATCATTATTATATCAATTCTAAAGTTGAGAATTTTATGTTTTGGACTTCTCAAGAAAATATTGATTTTACTGAAAAATAATAATATAGTAACTGAAATTACAAGGAGAAAACGGACTGTTAAAGGGAATAGGATCTAGCTTCAGGTGATTCAGGTGTTAGTGATGCTCTAATTTGCTAAATAAATGCCATGCCAAAGGCATGGGAATTTCTGAACTATATTTGGGCATGCACACAAGTATTTGGATGGTACAGAATGAGTAGTAGTTAGCTTGAGATCTTTTCCTACTTGAGGAAATGATAGTTGTCTAGATACCAGGAATGTGGGACTAGATTCCCGGAAGAACTCACAAATTGCACTATGCACTAACAAAGTAACAACCCGTCAAGACGGAGCCATTTTCCAGCTTCGCCTCTGCTGTTGTTTTATGTTGTTCACTAAGTACTACTCACGTGTAGCAACATCTCTTTCTCAAACTTTGTGTTTGACATTGCACTTTGCAGCATAACTATCTTATCATGCCTCTTTCCTCTTTATCAGGTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAGGTATGCAAAATTGTCTTCCATGCCTTCTCTTTTTACAGGGAAGAAAAAGTGTCTGTTGATTGTTATTTTTGCAGTAAGTACAACAACTTCTTACCTAGTGTAATATTACACAAGTGGCGTTTGGGGAGGGTGATGTGTACACAACCTTACCCTTACCTTGTAAAGGTAGAGAGGTTGTTTCTGATAGACCCTTGGCTCAAAGAAAGCATATCAAAAGATGGCTCCATGTAAAAAACCGGTTAGGTCTAAAACAGTAGATCATTGTTGAATTGTTTAAATTGTAACCAGTGTTTCATTACTTTAGAGCTTTCAAATTTTGATTGTGCCAAATAGAAAATTTATTGCAAAAGGCATAGGCTTTATTTAAAAACTTTTTTGTTAAATCAGCATGAAGATCCCCCTTTTCCATTTCTTTATCAGATCCATCTGTGAATAAAATTTCATCTATCCTACATAAGAAATATATCACACCAACTAATGTTATCAATTTTGCAAGTGTTTTCCGGGGTAAAAGATATGGTTTCAGGTTGAACTCTCTCTAGCTTGATGAAAAGTTGTCTGAGCTATCTTTTGCTTCTAGATCGTTCACACCGTTAGTCACTATCAGAAAGGTGTTGATGATCTTTCACATCATTGCATTTGCCACTGTCAAATATTTACCTACCTTATTTTGCAAAGTAAATGCACATAATAGCATTTTTGTATGCGATAAAAAATAAGCAAGGATTATAACTTTCTCTCCAGAGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAAT</genome_strand>
        <mrna_strand>CATAAAACTTAGCCACTGTTCTTCTTTACCCAGAGGAGCTATCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCGAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACTGGCTTACAG........................................................................................ATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTAATCCGGCAGGCAAACTATTGTGCTACTGCTGGACATCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCGGTGCCGGAGCTGATGAGAAGTATTGATGTTAAGTTGCCCATTCACTCAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTCCAGGTTTATCATCACAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGAAGTTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATCTACTTTGGTTGGTGGAGTGACTCTGGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581708" ref_strand="+" ref_description="SGN-E581708 [7335]">
      <seq>ataaaacagagccactgttcttctttacgcagaggagctatcaagatgattactggcggaagaagtttgatttcttcacagccggcgttttcaaatgatgcgaagaagcttctcgtatgcacaggaaataccgtttctatttttagcacctccactgggcttacagattgctgaattggaaggtcataggggattggtaacatcggtggtggtagtaccatctactactccgggcaggcaaactattgtgctactgctggacatcatctgaggatggtactattaaatattgggacttttcggtgccgggagctgatgagaagtattgatgttaagttgcccattcactcaatggttattccaggtttatcatcacaagccagagagagtagcgaaaaggcttctgatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="64852" stop="66693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65152" g_stop="65316" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65317" i_stop="65404" i_length="88">
            <donor d_prob="0.590" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65405" g_stop="65590" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="354" r_length="188" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65591" i_stop="66335" i_length="745">
            <donor d_prob="0.729" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66336" g_stop="66393" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="412" r_length="58" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E581708" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65152" e_stop="65316"/>
          <exon e_start="65405" e_stop="65590"/>
          <exon e_start="66336" e_stop="66393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCAC-AGGCTTACAGGTTCAGTTTACGTTTGCGACAAACTCAACAGCTAAAATAAATTCACTGTATAAGTTAATGTAAGTAGTTAATTTTGTAATTCTTACAGATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCC-GGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCC-GGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATGGTAAACAGCTTTTTACTTTTAAGAGTGCCTCAACGTGGATTAGGCAGTGCTTTGCACCTTCTGTGACATAAATTCCAGATGTAGTTATACATTGTATATAGCTACCTCAAGCACCTCCACTGTTCCTTGGGTACCTCCTACCAAGGCCTAGACGGTTGGGTAAAAAAGGCATCCTCTTTTGCCTCCGTTTAGTATCTAAATCTGGAATCATTATTATATCAATTCTAAAGTTGAGAATTTTATGTTTTGGACTTCTCAAGAAAATATTGATTTTACTGAAAAATAATAATATAGTAACTGAAATTACAAGGAGAAAACGGACTGTTAAAGGGAATAGGATCTAGCTTCAGGTGATTCAGGTGTTAGTGATGCTCTAATTTGCTAAATAAATGCCATGCCAAAGGCATGGGAATTTCTGAACTATATTTGGGCATGCACACAAGTATTTGGATGGTACAGAATGAGTAGTAGTTAGCTTGAGATCTTTTCCTACTTGAGGAAATGATAGTTGTCTAGATACCAGGAATGTGGGACTAGATTCCCGGAAGAACTCACAAATTGCACTATGCACTAACAAAGTAACAACCCGTCAAGACGGAGCCATTTTCCAGCTTCGCCTCTGCTGTTGTTTTATGTTGTTCACTAAGTACTACTCACGTGTAGCAACATCTCTTTCTCAAACTTTGTGTTTGACATTGCACTTTGCAGCATAACTATCTTATCATGCCTCTTTCCTCTTTATCAGGTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTT</genome_strand>
        <mrna_strand>ATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTATCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCGAAGAAGCTTCTCGTATGCACAGGAAATACCGTTTCTATTTTTAGCACCTCCACTGGGCTTACAG........................................................................................ATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGGCAGGCAAACTATTGTGCTACTGCTGGACATCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCGGTGCCGGGAGCTGATGAGAAGTATTGATGTTAAGTTGCCCATTCACTCAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCCAGGTTTATCATCACAAGCCAGAGAGAGTAGCGAAAAGGCTTCTGATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340103" ref_strand="+" ref_description="SGN-E340103 [cTOF-3-H10]">
      <seq>actgttcttctttacgcagaggagctagcaagatgattactggcggaagaagtttgatttcttcacagccggcgttttcaaatgatgcaaagaagcttctcgtatgcacaggaaacaccgtttctatttttagcacctccacaggcttacagattgctgaattggaaggtcataggggattggtaacatcggtggtggtagtaccatctactactccggcaggcaaactattgtgctactgctggacttcatctgaggatggtactattaaatattgggacttttccgtgccggagctaatgagaagtattgatgttaagttgcccatttactcaatggtaattccaggtttatcatcagaactcagagagagtagcgaaaagccttctgatctttttgcatatgtgtctgtcatagtgttgaaagaacagctgggagggagctgtgctttatggtggcagataaggaagtgtaacttaactaaatgtactttggttggtggagtgactctggctgagagtaaaaacgcactatctataacattaagctgctctggaagatacatgggcgtctgtgacaagcgcaagcttcgcatttgggaaataccaactaaagattctgatcattcagtgcttcagaacatcagattacatcatacgaaaaccctgagcactctagcttttcatccaacagatagaatagtttcagctggagatgtacaggaaagatcttatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="64865" stop="67780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65165" g_stop="65316" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65317" i_stop="65404" i_length="88">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65405" g_stop="65590" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="338" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65591" i_stop="66335" i_length="745">
            <donor d_prob="0.729" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66336" g_stop="66515" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="518" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66516" i_stop="67259" i_length="744">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.124" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67260" g_stop="67480" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="737" r_length="219" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E340103" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65165" e_stop="65316"/>
          <exon e_start="65405" e_stop="65590"/>
          <exon e_start="66336" e_stop="66515"/>
          <exon e_start="67260" e_stop="67480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAGGTTCAGTTTACGTTTGCGACAAACTCAACAGCTAAAATAAATTCACTGTATAAGTTAATGTAAGTAGTTAATTTTGTAATTCTTACAGATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATGGTAAACAGCTTTTTACTTTTAAGAGTGCCTCAACGTGGATTAGGCAGTGCTTTGCACCTTCTGTGACATAAATTCCAGATGTAGTTATACATTGTATATAGCTACCTCAAGCACCTCCACTGTTCCTTGGGTACCTCCTACCAAGGCCTAGACGGTTGGGTAAAAAAGGCATCCTCTTTTGCCTCCGTTTAGTATCTAAATCTGGAATCATTATTATATCAATTCTAAAGTTGAGAATTTTATGTTTTGGACTTCTCAAGAAAATATTGATTTTACTGAAAAATAATAATATAGTAACTGAAATTACAAGGAGAAAACGGACTGTTAAAGGGAATAGGATCTAGCTTCAGGTGATTCAGGTGTTAGTGATGCTCTAATTTGCTAAATAAATGCCATGCCAAAGGCATGGGAATTTCTGAACTATATTTGGGCATGCACACAAGTATTTGGATGGTACAGAATGAGTAGTAGTTAGCTTGAGATCTTTTCCTACTTGAGGAAATGATAGTTGTCTAGATACCAGGAATGTGGGACTAGATTCCCGGAAGAACTCACAAATTGCACTATGCACTAACAAAGTAACAACCCGTCAAGACGGAGCCATTTTCCAGCTTCGCCTCTGCTGTTGTTTTATGTTGTTCACTAAGTACTACTCACGTGTAGCAACATCTCTTTCTCAAACTTTGTGTTTGACATTGCACTTTGCAGCATAACTATCTTATCATGCCTCTTTCCTCTTTATCAGGTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAGGTATGCAAAATTGTCTTCCATGCCTTCTCTTTTTACAGGGAAGAAAAAGTGTCTGTTGATTGTTATTTTTGCAGTAAGTACAACAACTTCTTACCTAGTGTAATATTACACAAGTGGCGTTTGGGGAGGGTGATGTGTACACAACCTTACCCTTACCTTGTAAAGGTAGAGAGGTTGTTTCTGATAGACCCTTGGCTCAAAGAAAGCATATCAAAAGATGGCTCCATGTAAAAAACCGGTTAGGTCTAAAACAGTAGATCATTGTTGAATTGTTTAAATTGTAACCAGTGTTTCATTACTTTAGAGCTTTCAAATTTTGATTGTGCCAAATAGAAAATTTATTGCAAAAGGCATAGGCTTTATTTAAAAACTTTTTTGTTAAATCAGCATGAAGATCCCCCTTTTCCATTTCTTTATCAGATCCATCTGTGAATAAAATTTCATCTATCCTACATAAGAAATATATCACACCAACTAATGTTATCAATTTTGCAAGTGTTTTCCGGGGTAAAAGATATGGTTTCAGGTTGAACTCTCTCTAGCTTGATGAAAAGTTGTCTGAGCTATCTTTTGCTTCTAGATCGTTCACACCGTTAGTCACTATCAGAAAGGTGTTGATGATCTTTCACATCATTGCATTTGCCACTGTCAAATATTTACCTACCTTATTTTGCAAAGTAAATGCACATAATAGCATTTTTGTATGCGATAAAAAATAAGCAAGGATTATAACTTTCTCTCCAGAGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATACCAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGAAAACCCTGAGCACTCTAGCTTTTCATCCAACAGATAGAATAGTTTCAGCTGGAGATGTAACAGGAAGGATCTTAATATG</genome_strand>
        <mrna_strand>ACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAG........................................................................................ATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATACCAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGAAAACCCTGAGCACTCTAGCTTTTCATCCAACAGATAGAATAGTTTCAGCTGGAGATGT-ACAGGAAAGATCTT-ATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416325" ref_strand="+" ref_description="SGN-E416325 [STM-22-L18]">
      <seq>gttggacactgggaagcagaaattcctcccgcgaataggatccccccttttgtattttaccatctcatctgatccttctctgtcctctatatcttgtgcagataaccgaattcaccttcttaaaatgccttctatggaggtatcgaggtccattcaaggaatcaagcttcgtagcatggtcttggatatatctgacggctcatctgaaggaattgttttcgactctgccacgggggtagttgccatacgttcagaaaattactgtatccagttctatagcttgtttgatgaccgtgaggtttctgaggttcaagtttgtgaaagaagccaccaaccagctgatgaagtcacggtggtagtggatttggtcgccctctctccagagggttccatcatgattacggtagaaaccaggtttgctgaagaaggaataggaggtcttgtaagtttgaagttctggtcatgcagctcttcaaataaagacttcagcttatccacagtggtctatgagccccacagagattctggtatttcgtccattgctttccatcctttgcgtcacatggctgttaccacctcacggggtgctgatttcaaggtttggatcagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="67616" stop="71000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67916" g_stop="68003" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68004" i_stop="68073" i_length="70">
            <donor d_prob="0.751" d_score="0.98"/>
            <acceptor a_prob="0.708" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68074" g_stop="68151" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="166" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68152" i_stop="68664" i_length="513">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68665" g_stop="68805" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="307" r_length="141" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68806" i_stop="69383" i_length="578">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69384" g_stop="69428" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="352" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69429" i_stop="70296" i_length="868">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70297" g_stop="70463" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="519" r_length="167" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70464" i_stop="70609" i_length="146">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70610" g_stop="70688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="598" r_length="79" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E416325" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67916" e_stop="68003"/>
          <exon e_start="68074" e_stop="68151"/>
          <exon e_start="68665" e_stop="68805"/>
          <exon e_start="69384" e_stop="69428"/>
          <exon e_start="70297" e_stop="70463"/>
          <exon e_start="70610" e_stop="70688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGATACTGGGAAGCAGAAATTTCTCCCGCGAATAGGATCCCCCCTTTTGTATTTTACCATCTCATCGGATCCTTCTCTGTCCTCTGTAAGCACGTTTGTCCATAAAGTAAAAGTAGTTGTCAGTGGATTTGTTCTTACTAAGTAAATTTGTCCAGATATCTTGTGCAGATAACCGAATTCACCTTCTTAAAATGCCTTCGATGGAGGTATTGAGGTCCATTCAAGGAATCAAGGTTTGTTGTTGTTCTTCTTCTTTCTGGAAGCAAAACATCATTATAAAATATTAAGAGAAGACTTCATGCATGTCATCATTTTGCTAGGATGTTGTTTTGTGTTCATAATACTGATAAAGGAAAAAAATTCCAAGTTCATTAATGAATTTGTTTGATATATGTATATGAGCATCTGGAATTTTTTTTGATGAGGAAAGCATCTGGAATATTGCTTCGAAGCGTTAGAACGAATATATTCTTATTGCGGCGTACATGTTACTATCAGCTTGCATTTCCCTTTTGGTTTCGTTCTATCTTGTTTATGTGGACACTTATACTATGATCAATAATAAAGATTCCTCCAGCTCAATGCTTGCAGCGGGTTGGATGATCCTCTACACCCATGCACTATAATGTCTTTGTCTGGAGTGTATGGTCAATCCATTCAAAACACTTACTTCCATCTTGCCTGATTTTTTGACATGATACATTGAATTTTTTTGCTTTGGGAGACCTTACAGCTTTAATTTTCAGCTTCGCAGCACGGTCTTGGATATGTCTGATGGCTCATCTGAAGGAATTGTTTTCGACTCTGCCACGGGGCTAGTTGCCATATGTTCAGAAAATTACTGTATCCAGTTCTATAGCTTGTTTGATGACCGTGAGGTTTCTGAGGTAAGTGGATAGGAATAAGTTTCATCAGTTGATATTTTCTTTTCTGTAGCTCTAAATTTTCCCAGATAACCCCATCCTCGCAAAAATAATGATAAATAGAAAAAAGGAAATAAAACTAACAGCTGAATTTTAAGTTACTGGTTTCAAAAAAAAACAAACACTTACAACTTAATTTTGTTTTACCCCTTTTCAGTTGCACATCTTCATGTGTTCCTATTATTCTGTATGTTGGTTAGATTGTCTGCATGCGCCATTGGGGTATTTACCTTTTGCTTTGATTCACAATGAGGGGTTCTGTAGGTTTCCTTGGATATCTGATGTTCCCACCTTTATGATTAGTGTCAATGCATTCTTATTTTACAGTCAAGCTCTAGATATATCCAATGATTAGTGGAGGAGGGGGATTAGAGAAGTGCAAACTTTTGCACATTGTACTTTTGTACGCTTGCAAACAGTTTTTCGCTTGTATTAGTGTTGAAAGTATGTATTCTTTTTACTAGAGTTGGTAGTTGATTTGGCCCATGTATTCTTTTTACTAGAGTTGATAGTTGATTTGGCCCCAATCTGTCCATTTGTAGGTTCAAGTTTGTGAAAGAAGCCACCAACCTGCTGATGAAGTCACGGTATAGAATTTTTTCCTGTTGATCTTATTCTATTTGCTAAGTCCTGAACGGCTATATATATATATTCCAGTACTTTAATCAGCATATATAATTGTTTTTATGGATGTGTGTGTGCGCGCTTCAATGGAAGTTTGCCTGTGTATTTGACTAGTCCACTCTGTAATTTTGTACACATATCCTATATCCTAGAATTAACTAACCTGAGAAATTGATCAACTCTTCTTCTACCTTGTACCATTTGCTTCTTCACCAAGTTTCATGCCATTAATAGAATTAGGAGATGTAACATAATATGACTTTAATGAATTTAGATGGAACTCATGAGTGTGCAAACAATAATGCGGCACATGTATGGTCCTATGAGATGTTTGAAAAATGCTCTCTTTTAAGCAATAGTGGCATCTTTCCCTTCTCACTAAGAGATCATTCCTCACCTCAGTTTCCCAGATTTTGAGCTCAAATTTGGGGCAGAAAGTACCTTCTATGAACTTTGGAGATGGAGTAAGTCTAGAAGTTCAATAGCTTACACCAGAATGTGGATCTTTTCTTTGTATATTGGTTGTATCAAATGGTTCTCCCCAATAAATTTTCCAATGAACGGAGAAGAATGAAAAAACTTTAGCTGATATTGACATCAATTTTCATTTTTTAACTTCATCCTATGCTTCACATCAATAAACCTAATACACTCCCATCTTGAGTTCCACAGTCTTCATGCTATACATTACACCATAGACTACTGGAAAAAATTGCCCAGATGGTTAGAAACCCTTCTACAGCTAACAGTACCTTTGTTGATATTATTGTAATAATATGAACAAGCTGTTAAATGTTGAGGGTTGAAGAGCTATTTTTGGGTCTGTTGCAGGTGGTAGTGGATTTGGTCGCCCTTTCTCCAGAGGGTTCCATCATGATTACGGTAGAAACCAGGTTTGCTGAAGAAGGAATAGGAGGTCTTGTAAGTTTGAAGTTCTGGTCATGCAGCTCTTCAAACAAAGAATTCAGCTTATCCACAGTGGTCTATGAGCCCCACAGGTTCTTTCTTATCTAATTCTCGGAGCTCCTTTGGTCTCATATATCTTTTAGCTTGTGCTCTAATAAATTGGACAGTTAATCCCTCTTGTAAATAATACTCTAGCTTACTTTCATAAATTGACTTTCAAGCATGGGTTGGTTTGCAGAGATTCTGGTATTTCGTCCATTGCTTTCCATCCTTTGCGTCACATGGCTGTTACCACCTCACAGGGTGCTGATTTCAAG</genome_strand>
        <mrna_strand>GTTGGACACTGGGAAGCAGAAATTCCTCCCGCGAATAGGATCCCCCCTTTTGTATTTTACCATCTCATCTGATCCTTCTCTGTCCTCT......................................................................ATATCTTGTGCAGATAACCGAATTCACCTTCTTAAAATGCCTTCTATGGAGGTATCGAGGTCCATTCAAGGAATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGTAGCATGGTCTTGGATATATCTGACGGCTCATCTGAAGGAATTGTTTTCGACTCTGCCACGGGGGTAGTTGCCATACGTTCAGAAAATTACTGTATCCAGTTCTATAGCTTGTTTGATGACCGTGAGGTTTCTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGTTTGTGAAAGAAGCCACCAACCAGCTGATGAAGTCACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGTGGATTTGGTCGCCCTCTCTCCAGAGGGTTCCATCATGATTACGGTAGAAACCAGGTTTGCTGAAGAAGGAATAGGAGGTCTTGTAAGTTTGAAGTTCTGGTCATGCAGCTCTTCAAATAAAGACTTCAGCTTATCCACAGTGGTCTATGAGCCCCACAG..................................................................................................................................................AGATTCTGGTATTTCGTCCATTGCTTTCCATCCTTTGCGTCACATGGCTGTTACCACCTCACGGGGTGCTGATTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438643" ref_strand="+" ref_description="SGN-E438643 [cSTA-9-C19]">
      <seq>gttggacacctgggaagcagaaattcctcccgcgaataggatcccccccttttgtattttacccatctcatctgatccttctctgtcctctatatcttgtgccagataaccgaattcaccttcttaaaatgccttctatggaggtatcgaggtccattcaaggaatcaagcttcgtagcatggtcttggatatatctgacggctcatctgaaggaattgttttcgactctgccacgggggtagttgccatacgttcagaaaattactgtatccagttctatagcttgtttgatgacccgtgaggtttctgaggttcaagtttgtgaaagaagccccccaccagctgatgaagtcacggtggtagtggatttggtcgccctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="67616" stop="70623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67916" g_stop="68003" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68004" i_stop="68073" i_length="70">
            <donor d_prob="0.751" d_score="0.90"/>
            <acceptor a_prob="0.708" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68074" g_stop="68151" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="170" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68152" i_stop="68664" i_length="513">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68665" g_stop="68805" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="312" r_length="142" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68806" i_stop="69383" i_length="578">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69384" g_stop="69428" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="357" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69429" i_stop="70296" i_length="868">
            <donor d_prob="0.971" d_score="0.93"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70297" g_stop="70323" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="384" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E438643" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67916" e_stop="68003"/>
          <exon e_start="68074" e_stop="68151"/>
          <exon e_start="68665" e_stop="68805"/>
          <exon e_start="69384" e_stop="69428"/>
          <exon e_start="70297" e_stop="70323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGATA-CTGGGAAGCAGAAATTTCTCCCGCGAATAGGAT-CCCCCCTTTTGTATTTTA-CCATCTCATCGGATCCTTCTCTGTCCTCTGTAAGCACGTTTGTCCATAAAGTAAAAGTAGTTGTCAGTGGATTTGTTCTTACTAAGTAAATTTGTCCAGATATCTTGTG-CAGATAACCGAATTCACCTTCTTAAAATGCCTTCGATGGAGGTATTGAGGTCCATTCAAGGAATCAAGGTTTGTTGTTGTTCTTCTTCTTTCTGGAAGCAAAACATCATTATAAAATATTAAGAGAAGACTTCATGCATGTCATCATTTTGCTAGGATGTTGTTTTGTGTTCATAATACTGATAAAGGAAAAAAATTCCAAGTTCATTAATGAATTTGTTTGATATATGTATATGAGCATCTGGAATTTTTTTTGATGAGGAAAGCATCTGGAATATTGCTTCGAAGCGTTAGAACGAATATATTCTTATTGCGGCGTACATGTTACTATCAGCTTGCATTTCCCTTTTGGTTTCGTTCTATCTTGTTTATGTGGACACTTATACTATGATCAATAATAAAGATTCCTCCAGCTCAATGCTTGCAGCGGGTTGGATGATCCTCTACACCCATGCACTATAATGTCTTTGTCTGGAGTGTATGGTCAATCCATTCAAAACACTTACTTCCATCTTGCCTGATTTTTTGACATGATACATTGAATTTTTTTGCTTTGGGAGACCTTACAGCTTTAATTTTCAGCTTCGCAGCACGGTCTTGGATATGTCTGATGGCTCATCTGAAGGAATTGTTTTCGACTCTGCCACGGGGCTAGTTGCCATATGTTCAGAAAATTACTGTATCCAGTTCTATAGCTTGTTTGATGA-CCGTGAGGTTTCTGAGGTAAGTGGATAGGAATAAGTTTCATCAGTTGATATTTTCTTTTCTGTAGCTCTAAATTTTCCCAGATAACCCCATCCTCGCAAAAATAATGATAAATAGAAAAAAGGAAATAAAACTAACAGCTGAATTTTAAGTTACTGGTTTCAAAAAAAAACAAACACTTACAACTTAATTTTGTTTTACCCCTTTTCAGTTGCACATCTTCATGTGTTCCTATTATTCTGTATGTTGGTTAGATTGTCTGCATGCGCCATTGGGGTATTTACCTTTTGCTTTGATTCACAATGAGGGGTTCTGTAGGTTTCCTTGGATATCTGATGTTCCCACCTTTATGATTAGTGTCAATGCATTCTTATTTTACAGTCAAGCTCTAGATATATCCAATGATTAGTGGAGGAGGGGGATTAGAGAAGTGCAAACTTTTGCACATTGTACTTTTGTACGCTTGCAAACAGTTTTTCGCTTGTATTAGTGTTGAAAGTATGTATTCTTTTTACTAGAGTTGGTAGTTGATTTGGCCCATGTATTCTTTTTACTAGAGTTGATAGTTGATTTGGCCCCAATCTGTCCATTTGTAGGTTCAAGTTTGTGAAAGAAGCCACCAACCTGCTGATGAAGTCACGGTATAGAATTTTTTCCTGTTGATCTTATTCTATTTGCTAAGTCCTGAACGGCTATATATATATATTCCAGTACTTTAATCAGCATATATAATTGTTTTTATGGATGTGTGTGTGCGCGCTTCAATGGAAGTTTGCCTGTGTATTTGACTAGTCCACTCTGTAATTTTGTACACATATCCTATATCCTAGAATTAACTAACCTGAGAAATTGATCAACTCTTCTTCTACCTTGTACCATTTGCTTCTTCACCAAGTTTCATGCCATTAATAGAATTAGGAGATGTAACATAATATGACTTTAATGAATTTAGATGGAACTCATGAGTGTGCAAACAATAATGCGGCACATGTATGGTCCTATGAGATGTTTGAAAAATGCTCTCTTTTAAGCAATAGTGGCATCTTTCCCTTCTCACTAAGAGATCATTCCTCACCTCAGTTTCCCAGATTTTGAGCTCAAATTTGGGGCAGAAAGTACCTTCTATGAACTTTGGAGATGGAGTAAGTCTAGAAGTTCAATAGCTTACACCAGAATGTGGATCTTTTCTTTGTATATTGGTTGTATCAAATGGTTCTCCCCAATAAATTTTCCAATGAACGGAGAAGAATGAAAAAACTTTAGCTGATATTGACATCAATTTTCATTTTTTAACTTCATCCTATGCTTCACATCAATAAACCTAATACACTCCCATCTTGAGTTCCACAGTCTTCATGCTATACATTACACCATAGACTACTGGAAAAAATTGCCCAGATGGTTAGAAACCCTTCTACAGCTAACAGTACCTTTGTTGATATTATTGTAATAATATGAACAAGCTGTTAAATGTTGAGGGTTGAAGAGCTATTTTTGGGTCTGTTGCAGGTGGTAGTGGATTTGGTCGCCCTTTCT</genome_strand>
        <mrna_strand>GTTGGACACCTGGGAAGCAGAAATTCCTCCCGCGAATAGGATCCCCCCCTTTTGTATTTTACCCATCTCATCTGATCCTTCTCTGTCCTCT......................................................................ATATCTTGTGCCAGATAACCGAATTCACCTTCTTAAAATGCCTTCTATGGAGGTATCGAGGTCCATTCAAGGAATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGTAGCATGGTCTTGGATATATCTGACGGCTCATCTGAAGGAATTGTTTTCGACTCTGCCACGGGGGTAGTTGCCATACGTTCAGAAAATTACTGTATCCAGTTCTATAGCTTGTTTGATGACCCGTGAGGTTTCTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGTTTGTGAAAGAAGCCCCCCACCAGCTGATGAAGTCACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGTGGATTTGGTCGCCCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449283" ref_strand="+" ref_description="SGN-E449283 [cSTS-6-A9]">
      <seq>gtcacatggctgttaccacctcacggggtgctgatttcaaggtttggatcggcagtcaggaaatgcaacaaaaagaccagatgcaaaatgctggatggacatgccattctgttggttcctataagaaaaagccaatgacagctgctgccttttctggagatggttctgttctggctgtagctgcagaaaaagttattacattgtgggatccggagaggaatattcttgtagctacagttggggagagtcttgagccaatctcttccttagcatttattgggaagtcagagtatgttgtaaccacatcgcaaggttctaaggctcaagtatcagtgtggagcatgtcaaagctgtctgtatcatggtcttacaaacttaagatagaagctgtaacttgtgcgatggatgactccttgtttgccatcctggcccttctcccaaagccagttggacctgtgatgtctaatccatccacaactctggatggcgatggagtgatcttattattcaaggccgcagatcatgttcccgtagggacctggtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="70348" stop="74171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70648" g_stop="70688" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70689" i_stop="71659" i_length="971">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71660" g_stop="71742" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="124" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71743" i_stop="72031" i_length="289">
            <donor d_prob="0.545" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72032" g_stop="72161" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="254" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72162" i_stop="72550" i_length="389">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72551" g_stop="72683" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="387" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72684" i_stop="73711" i_length="1028">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73712" g_stop="73871" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="547" r_length="160" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E449283" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70648" e_stop="70688"/>
          <exon e_start="71660" e_stop="71742"/>
          <exon e_start="72032" e_stop="72161"/>
          <exon e_start="72551" e_stop="72683"/>
          <exon e_start="73712" e_stop="73871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACATGGCTGTTACCACCTCACAGGGTGCTGATTTCAAGGTAAGTGGATAAATTTAGATTAATTGTGAAGTTATGTGTTTACACATTGTATTAAGAGTAGGGTGGGTGAAATGGAGGCTCGCTTTTGGGGTACTGTGCGACAAGAATGTGTCAACCAGGCTCAACGGTAGGTTTTACAGAGTGGTGGTTAGACCAACATTAGTATGGGACAGAGGGGTGGTTAGACCAACATTGTTGTATGGGATAGAATGCTGACCATTCAAGAACACCCACCTTAAGAAGACGAAGGTAGCAGAGATGGGGAAGTTCAAGATGAATGTTTTGGCATACTAGGAGAGGTATGATTAGGAACGAAGTTATACAGGGCAAGGATTGCTACTTTTGGTGCACTTGTATACTGGCGAGCTTTTGCCCCTTGCTAATGAAAGTTATTACTTCATTAAAAAAAAACAAAAAAACAGGGCAACATAGGGGTGGTTTCCGTGGCGAACAAGATTAGGGAAGCGAGACTGAGATGGTTCGAACATGTGAAGAGGAAGTTTGCGGATGTGTCACTAGGGAGGTGTGAGAGGATGGTTGTAACATGAATTATGTCAGGCCCAAAACGAATTGGGAGGTGATTAAAATTTAGACACAACAACCCACAACTTCCGGTTACTGAGTGGCAGGACCCTAGATAGGAAGTTTTGGAGGTTTATTATTAGGGTAGAAGGCTAGTAAGTAGCCTAGTGTTGTCGCACTTCGTGTGGGAGAGTTAGGGGCTATTTAGTAGTTGCGTAATCTGTTATTCTTCTATGTGCATTACTACCCGTTGCTTCATTTGCTTTATATCTTGCTATTATTTTGTCATATTATTTTTGCAATCCTTCTTGAAAACATTTCTTTCGAAAAAACTTCTCTACGCCTAAAGGCAGTAGGGTGTGCTTACATCCTACCCTCCCCAGACACACCTCGTGTGATTACACCGGGTATGATGTTGTGTTCACTAACATCACTGTGTTTTTTGGTAGGTTTGGATCGGCAGTCAGGAGATGCAACAAAAAGATCAGATGCAGAACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAAGTATGTTAGGCTTAAATTTTAAAGGACGACTACATGGTCAGATAGAAAAATTGCCCAACCATGTAAAAAAATCCCAACTGTTTGAGAGAAGAAATTCTAGATGAAAATGCCACTTCCTTTGTTGTTCACTTTGTTTATTTGCACAAAACACTAGCAATTAGATGTCATTTGCATTTGGTGTTCTATGATATATGTCTGCTCATTCGAACTCTGCCATTGTTGATGACTACAACATAGTAAATTGATAGGACCTCTGTTTCTCTGTTTAATATGCTTTCTCCTTTAATAGGAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAGGTAAGTTCTTGGCATGCCAGTATTAATTTTACACTATTGACCTATAAAAAAATAACGATTTCACACTTCCTAGTTCAAATTTAAGTTGCTTGCCTTGGGGAAAGAAAGTTTTTCACCTAGTATTTGAAACCTTTTTACTTAAAGTGTTCTTTATGACTCACTTCTGAGTTGCTGTCTGGTAACTTCATTGGATGGCAAAGAAGTTAGCTGAGGGTTATCCTTTTTGTTAAACAATAAACGGAAATATGAGCACATAAAACAACCGAAAACAAATCTTGAAAATCTTAATTTACAGTTTTGATGCTTTCCTTGTGGCAATTTATACACCTTTATCATTCTTTCCGTATGTATACAATATTTTTCTCATTTGAACTGTTTTCTATGTGCAGCCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAGGTTTGTATATATCTCTTGTTTATCATACTTCGCCCCAATAAACTTTAAACAAATATAAACCACTTGCTTTTGGCAGCTTATGATAATTCTCTAATCTTATCATTTATTTCTAACGTTCTGCTTCTAGTTACTTAGAAAAAATGGATTAATATCAATGCAATTGTATGTCAGATACTGAAATTTGTTATTTAAGTGCAACTTGATCATTATAGTGCTAAATTCTCTATGTTCGGTGTTTTTAATGTCATGAAGCGTGTGCTTCACTTTTTCTTAAAGCCCCATGGATGCTTTTGTTTTTTGTGATTTTCTTCAAAACACTGGCATCGGAAGTGAATTGCCAACCATATTTCTCCATTTTTGAAGTTCTCATAGTTTTTGCTTCCGGAATTACGAGCTTGGCTCTTGAATTTGAATTGTTAGGTGTCATATGCAAATGGAAGTATGCAATCTTGCTAAAAAATTAACTGAAGCAAAGGGCTGGTGGATATATTGAATATGTAGTCTGGCCAATGGTAGATTATGCATTGTGATAGTCTTTTTATACCATGAATCTTGCTGCCCTTGTTATCAGAGTTGCATGGCTTGGAGTACAACTAGTAAGCTAATTCTCTTTCAAGCCAAACCCAGGACAGGTCTTTTGGGGAAATCTTAAGCTATCTTGCTAGTGCTAACAGTCCAATTTTGCTGCATTGGGTTTCCTATTAAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGAGTTGAGGAGACTCAGATTCTAAAATAAGTTTTCCTTAATTTGCACGTATATGTATAATCTAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGACTTGAGGAGACTGGGATTCTAAAATAAGTTTTCCTTTAATTTGCATGTATATGTATAATCTAACTAAAAGGTCTGAATAAGTCTAGCAGATTCATGGTGAACTTGTAGGCAGATGTGTCATACATTACTGGAAAATCTTTGTTAATGTTTCATCCTAAATAGTATCTTATTAATCACTGCAGCTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGT</genome_strand>
        <mrna_strand>GTCACATGGCTGTTACCACCTCACGGGGTGCTGATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGATCGGCAGTCAGGAAATGCAACAAAAAGACCAGATGCAAAATGCTGGATGGACATGCCATTCTGTTGGTTCCTATAA.................................................................................................................................................................................................................................................................................................GAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTTGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAACTTGTGCGATGGATGACTCCTTGTTTGCCATCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATCCATCCACAACTCTGGATGGCGATGGAGTGATCTTATTATTCAAGGCCGCAGATCATGTTCCCGTAGGGACCTGGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477589" ref_strand="+" ref_description="SGN-E477589 [cSTD-1-I11]">
      <seq>tcacggggtgcctgatttcaaggtttggatcggcagtcaggaaatgcaacaaaaagaccagatgcaaaatgctggatggacatgccattctgttggttcctataagaaaaagccaatgacagctgctgccttttctggagatggttctgttctggctgtagctgcagaaaaagttattacattgtgggatccggagaggaatattcttgtagctacagttggggagagtcttgagccaatctcttccttagcatttattgggaagtcagagtatgttgtaaccacatcgcaaggttctaaggctcaagtatcagtgtggagcatgtcaaagctgtctgtatcatggtcttacaaacttaagatagaagctgtaacttgtgcgatggatgactccttgtttgccatcctggcccttctcccaaagccagttggacctgtgatgtctaatccatccacaactctggatggcgatggagtgatcttattattcagggccgcagatcatgttcccgtagggacctggtttgtaagaaggcaaaaggtgcttcacttgctttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="71358" stop="74641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71660" g_stop="71742" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="105" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71743" i_stop="72031" i_length="289">
            <donor d_prob="0.545" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72032" g_stop="72161" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="235" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72162" i_stop="72550" i_length="389">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72551" g_stop="72683" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="368" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72684" i_stop="73711" i_length="1028">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73712" g_stop="73878" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="534" r_length="166" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73879" i_stop="74316" i_length="438">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74317" g_stop="74341" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="559" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E477589" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71660" e_stop="71742"/>
          <exon e_start="72032" e_stop="72161"/>
          <exon e_start="72551" e_stop="72683"/>
          <exon e_start="73712" e_stop="73878"/>
          <exon e_start="74317" e_stop="74341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGATCGGCAGTCAGGAGATGCAACAAAAAGATCAGATGCAGAACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAAGTATGTTAGGCTTAAATTTTAAAGGACGACTACATGGTCAGATAGAAAAATTGCCCAACCATGTAAAAAAATCCCAACTGTTTGAGAGAAGAAATTCTAGATGAAAATGCCACTTCCTTTGTTGTTCACTTTGTTTATTTGCACAAAACACTAGCAATTAGATGTCATTTGCATTTGGTGTTCTATGATATATGTCTGCTCATTCGAACTCTGCCATTGTTGATGACTACAACATAGTAAATTGATAGGACCTCTGTTTCTCTGTTTAATATGCTTTCTCCTTTAATAGGAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAGGTAAGTTCTTGGCATGCCAGTATTAATTTTACACTATTGACCTATAAAAAAATAACGATTTCACACTTCCTAGTTCAAATTTAAGTTGCTTGCCTTGGGGAAAGAAAGTTTTTCACCTAGTATTTGAAACCTTTTTACTTAAAGTGTTCTTTATGACTCACTTCTGAGTTGCTGTCTGGTAACTTCATTGGATGGCAAAGAAGTTAGCTGAGGGTTATCCTTTTTGTTAAACAATAAACGGAAATATGAGCACATAAAACAACCGAAAACAAATCTTGAAAATCTTAATTTACAGTTTTGATGCTTTCCTTGTGGCAATTTATACACCTTTATCATTCTTTCCGTATGTATACAATATTTTTCTCATTTGAACTGTTTTCTATGTGCAGCCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAGGTTTGTATATATCTCTTGTTTATCATACTTCGCCCCAATAAACTTTAAACAAATATAAACCACTTGCTTTTGGCAGCTTATGATAATTCTCTAATCTTATCATTTATTTCTAACGTTCTGCTTCTAGTTACTTAGAAAAAATGGATTAATATCAATGCAATTGTATGTCAGATACTGAAATTTGTTATTTAAGTGCAACTTGATCATTATAGTGCTAAATTCTCTATGTTCGGTGTTTTTAATGTCATGAAGCGTGTGCTTCACTTTTTCTTAAAGCCCCATGGATGCTTTTGTTTTTTGTGATTTTCTTCAAAACACTGGCATCGGAAGTGAATTGCCAACCATATTTCTCCATTTTTGAAGTTCTCATAGTTTTTGCTTCCGGAATTACGAGCTTGGCTCTTGAATTTGAATTGTTAGGTGTCATATGCAAATGGAAGTATGCAATCTTGCTAAAAAATTAACTGAAGCAAAGGGCTGGTGGATATATTGAATATGTAGTCTGGCCAATGGTAGATTATGCATTGTGATAGTCTTTTTATACCATGAATCTTGCTGCCCTTGTTATCAGAGTTGCATGGCTTGGAGTACAACTAGTAAGCTAATTCTCTTTCAAGCCAAACCCAGGACAGGTCTTTTGGGGAAATCTTAAGCTATCTTGCTAGTGCTAACAGTCCAATTTTGCTGCATTGGGTTTCCTATTAAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGAGTTGAGGAGACTCAGATTCTAAAATAAGTTTTCCTTAATTTGCACGTATATGTATAATCTAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGACTTGAGGAGACTGGGATTCTAAAATAAGTTTTCCTTTAATTTGCATGTATATGTATAATCTAACTAAAAGGTCTGAATAAGTCTAGCAGATTCATGGTGAACTTGTAGGCAGATGTGTCATACATTACTGGAAAATCTTTGTTAATGTTTCATCCTAAATAGTATCTTATTAATCACTGCAGCTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAGGTATTGGCTCCTGTCTCAAATTTTGAGTTCTTGTTTCTTTCGAATGTTTTAGTTGGGAGCTTGATGTCAGTTACAATGGGGAATCGAATCACCTTGCACTCGTTTAGAGGTGGTAAGATCTTGATCTTATGGAGGCTGTTGTGAAACCGATGGGAGAAGGCTTGGACGTATAGCAAGATTAAAATAATTACATTCACCCTGACCTAGGTTTTGTCTGTCTTCATTCCCTTGTTTTTCCTGCACCCTGAGTACAGATGTTTTAGGACGCCCTTCTAATTTCCTGTCACCTTAACCCTTCTGACAGTTTCTTGTGCCTTTCTAATTTATTCATATATTGGGAGAGGTATCACATTTTCTAAGGTGAAAACTCTATTTATAGATGGGACGGGAACTGGACATCTTTACCTTTTTTTTGCATCTCATCCTTTTTCTTTACAGGCAAAAGGTGCTTCACTTGCTTTCA</genome_strand>
        <mrna_strand>GTTTGGATCGGCAGTCAGGAAATGCAACAAAAAGACCAGATGCAAAATGCTGGATGGACATGCCATTCTGTTGGTTCCTATAA.................................................................................................................................................................................................................................................................................................GAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTTGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAACTTGTGCGATGGATGACTCCTTGTTTGCCATCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATCCATCCACAACTCTGGATGGCGATGGAGTGATCTTATTATTCAGGGCCGCAGATCATGTTCCCGTAGGGACCTGGTTTGTAAG-AAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGTGCTTCACTTGCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688447" ref_strand="+" ref_description="SGN-E688447 [t3_tus_50_i15]">
      <seq>aacgctggatggacatgccattctgttggttcctataagaaaaagccaatgacagctgctgccttttctggagatggttctgttctggctgtagctgcaaaaaaagttattacattgtgggatccggagaggaatattcttgtacctacagttggggagagtcttgagccaatctcttccttagcatttattgggaagtcagagtatgtggtaaccacatcgcaaggttctaaggctcaagtatcagtgtggagcatgtcaaagctgactgtatcatggtcttacaaacttaagatagaagctgtaacttgtgcgatggatgattccttgtttgccgtcctggcccttctcccaaagccagttggacctgtgatgtctaatgaagccacaactctggatggcgatggagtgatcttgttattcagggccacagatcatgttcccgtaaggatctggtttgtaagaaaggcaaaaggtgcttcacttgctttcattcgcggaagtcctaagtcagaggatgatgttactgatggcagatcagtgcagttgctattagcttacctcagcgttgatcatgaatatatgctttttgatccactcgacggccacacccatatacataagatgagccgaggaaatcttgctgatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="71405" stop="74800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71705" g_stop="71742" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71743" i_stop="72031" i_length="289">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72032" g_stop="72161" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="168" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72162" i_stop="72550" i_length="389">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72551" g_stop="72683" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="301" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72684" i_stop="73711" i_length="1028">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73712" g_stop="73878" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="468" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73879" i_stop="74316" i_length="438">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74317" g_stop="74500" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="652" r_length="184" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E688447" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71705" e_stop="71742"/>
          <exon e_start="72032" e_stop="72161"/>
          <exon e_start="72551" e_stop="72683"/>
          <exon e_start="73712" e_stop="73878"/>
          <exon e_start="74317" e_stop="74500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAAGTATGTTAGGCTTAAATTTTAAAGGACGACTACATGGTCAGATAGAAAAATTGCCCAACCATGTAAAAAAATCCCAACTGTTTGAGAGAAGAAATTCTAGATGAAAATGCCACTTCCTTTGTTGTTCACTTTGTTTATTTGCACAAAACACTAGCAATTAGATGTCATTTGCATTTGGTGTTCTATGATATATGTCTGCTCATTCGAACTCTGCCATTGTTGATGACTACAACATAGTAAATTGATAGGACCTCTGTTTCTCTGTTTAATATGCTTTCTCCTTTAATAGGAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAGGTAAGTTCTTGGCATGCCAGTATTAATTTTACACTATTGACCTATAAAAAAATAACGATTTCACACTTCCTAGTTCAAATTTAAGTTGCTTGCCTTGGGGAAAGAAAGTTTTTCACCTAGTATTTGAAACCTTTTTACTTAAAGTGTTCTTTATGACTCACTTCTGAGTTGCTGTCTGGTAACTTCATTGGATGGCAAAGAAGTTAGCTGAGGGTTATCCTTTTTGTTAAACAATAAACGGAAATATGAGCACATAAAACAACCGAAAACAAATCTTGAAAATCTTAATTTACAGTTTTGATGCTTTCCTTGTGGCAATTTATACACCTTTATCATTCTTTCCGTATGTATACAATATTTTTCTCATTTGAACTGTTTTCTATGTGCAGCCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAGGTTTGTATATATCTCTTGTTTATCATACTTCGCCCCAATAAACTTTAAACAAATATAAACCACTTGCTTTTGGCAGCTTATGATAATTCTCTAATCTTATCATTTATTTCTAACGTTCTGCTTCTAGTTACTTAGAAAAAATGGATTAATATCAATGCAATTGTATGTCAGATACTGAAATTTGTTATTTAAGTGCAACTTGATCATTATAGTGCTAAATTCTCTATGTTCGGTGTTTTTAATGTCATGAAGCGTGTGCTTCACTTTTTCTTAAAGCCCCATGGATGCTTTTGTTTTTTGTGATTTTCTTCAAAACACTGGCATCGGAAGTGAATTGCCAACCATATTTCTCCATTTTTGAAGTTCTCATAGTTTTTGCTTCCGGAATTACGAGCTTGGCTCTTGAATTTGAATTGTTAGGTGTCATATGCAAATGGAAGTATGCAATCTTGCTAAAAAATTAACTGAAGCAAAGGGCTGGTGGATATATTGAATATGTAGTCTGGCCAATGGTAGATTATGCATTGTGATAGTCTTTTTATACCATGAATCTTGCTGCCCTTGTTATCAGAGTTGCATGGCTTGGAGTACAACTAGTAAGCTAATTCTCTTTCAAGCCAAACCCAGGACAGGTCTTTTGGGGAAATCTTAAGCTATCTTGCTAGTGCTAACAGTCCAATTTTGCTGCATTGGGTTTCCTATTAAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGAGTTGAGGAGACTCAGATTCTAAAATAAGTTTTCCTTAATTTGCACGTATATGTATAATCTAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGACTTGAGGAGACTGGGATTCTAAAATAAGTTTTCCTTTAATTTGCATGTATATGTATAATCTAACTAAAAGGTCTGAATAAGTCTAGCAGATTCATGGTGAACTTGTAGGCAGATGTGTCATACATTACTGGAAAATCTTTGTTAATGTTTCATCCTAAATAGTATCTTATTAATCACTGCAGCTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAGGTATTGGCTCCTGTCTCAAATTTTGAGTTCTTGTTTCTTTCGAATGTTTTAGTTGGGAGCTTGATGTCAGTTACAATGGGGAATCGAATCACCTTGCACTCGTTTAGAGGTGGTAAGATCTTGATCTTATGGAGGCTGTTGTGAAACCGATGGGAGAAGGCTTGGACGTATAGCAAGATTAAAATAATTACATTCACCCTGACCTAGGTTTTGTCTGTCTTCATTCCCTTGTTTTTCCTGCACCCTGAGTACAGATGTTTTAGGACGCCCTTCTAATTTCCTGTCACCTTAACCCTTCTGACAGTTTCTTGTGCCTTTCTAATTTATTCATATATTGGGAGAGGTATCACATTTTCTAAGGTGAAAACTCTATTTATAGATGGGACGGGAACTGGACATCTTTACCTTTTTTTTGCATCTCATCCTTTTTCTTTACAGGCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTG</genome_strand>
        <mrna_strand>AACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAA.................................................................................................................................................................................................................................................................................................GAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAAAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTACCTACAGTTGGGGAGAGTCTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGACTGTATCATGGTCTTACAAACTTAAGATAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAAGGATCTGGTTTGTAAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATGAGCCGAGGAAATCTTGCTGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550757" ref_strand="+" ref_description="SGN-E550757 [TUS-50-I15]">
      <seq>aacgctggatggacatgccattctgttggttcctataagaaaaagccaatgacagctgctgccttttctggagatggttctgttctggctgtagctgcaaaaaaagttattacattgtgggatccggagaggaatattcttgtacctacagttggggagagtcttgagccaatctcttccttagcatttattgggaagtcagagtatgtggtaaccacatcgcaaggttctaaggctcaagtatcagtgtggagcatgtcaaagctgactgtatcatggtcttacaaacttaagatagaagctgtaacttgtgcgatggatgattccttgtttgccgtcctggcccttctcccaaagccagttggacctgtgatgtctaatgaagccacaactctggatggcgatggagtgatcttgttattcagggccacagatcatgttcccgtaaggatctggtttgtaagaaaggcaaaaggtgcttcacttgctttcattcgcggaagtcctaagtcagaggatgatgttactgatggcagatcactgcagttgctattaacttacctcagcgttgatcatgaatatatgctttttgatccactcgacggccacacccatataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="71405" stop="74768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71705" g_stop="71742" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71743" i_stop="72031" i_length="289">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72032" g_stop="72161" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="168" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72162" i_stop="72550" i_length="389">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72551" g_stop="72683" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="301" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72684" i_stop="73711" i_length="1028">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73712" g_stop="73878" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="468" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73879" i_stop="74316" i_length="438">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74317" g_stop="74468" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="620" r_length="152" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E550757" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71705" e_stop="71742"/>
          <exon e_start="72032" e_stop="72161"/>
          <exon e_start="72551" e_stop="72683"/>
          <exon e_start="73712" e_stop="73878"/>
          <exon e_start="74317" e_stop="74468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAAGTATGTTAGGCTTAAATTTTAAAGGACGACTACATGGTCAGATAGAAAAATTGCCCAACCATGTAAAAAAATCCCAACTGTTTGAGAGAAGAAATTCTAGATGAAAATGCCACTTCCTTTGTTGTTCACTTTGTTTATTTGCACAAAACACTAGCAATTAGATGTCATTTGCATTTGGTGTTCTATGATATATGTCTGCTCATTCGAACTCTGCCATTGTTGATGACTACAACATAGTAAATTGATAGGACCTCTGTTTCTCTGTTTAATATGCTTTCTCCTTTAATAGGAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAGGTAAGTTCTTGGCATGCCAGTATTAATTTTACACTATTGACCTATAAAAAAATAACGATTTCACACTTCCTAGTTCAAATTTAAGTTGCTTGCCTTGGGGAAAGAAAGTTTTTCACCTAGTATTTGAAACCTTTTTACTTAAAGTGTTCTTTATGACTCACTTCTGAGTTGCTGTCTGGTAACTTCATTGGATGGCAAAGAAGTTAGCTGAGGGTTATCCTTTTTGTTAAACAATAAACGGAAATATGAGCACATAAAACAACCGAAAACAAATCTTGAAAATCTTAATTTACAGTTTTGATGCTTTCCTTGTGGCAATTTATACACCTTTATCATTCTTTCCGTATGTATACAATATTTTTCTCATTTGAACTGTTTTCTATGTGCAGCCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAGGTTTGTATATATCTCTTGTTTATCATACTTCGCCCCAATAAACTTTAAACAAATATAAACCACTTGCTTTTGGCAGCTTATGATAATTCTCTAATCTTATCATTTATTTCTAACGTTCTGCTTCTAGTTACTTAGAAAAAATGGATTAATATCAATGCAATTGTATGTCAGATACTGAAATTTGTTATTTAAGTGCAACTTGATCATTATAGTGCTAAATTCTCTATGTTCGGTGTTTTTAATGTCATGAAGCGTGTGCTTCACTTTTTCTTAAAGCCCCATGGATGCTTTTGTTTTTTGTGATTTTCTTCAAAACACTGGCATCGGAAGTGAATTGCCAACCATATTTCTCCATTTTTGAAGTTCTCATAGTTTTTGCTTCCGGAATTACGAGCTTGGCTCTTGAATTTGAATTGTTAGGTGTCATATGCAAATGGAAGTATGCAATCTTGCTAAAAAATTAACTGAAGCAAAGGGCTGGTGGATATATTGAATATGTAGTCTGGCCAATGGTAGATTATGCATTGTGATAGTCTTTTTATACCATGAATCTTGCTGCCCTTGTTATCAGAGTTGCATGGCTTGGAGTACAACTAGTAAGCTAATTCTCTTTCAAGCCAAACCCAGGACAGGTCTTTTGGGGAAATCTTAAGCTATCTTGCTAGTGCTAACAGTCCAATTTTGCTGCATTGGGTTTCCTATTAAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGAGTTGAGGAGACTCAGATTCTAAAATAAGTTTTCCTTAATTTGCACGTATATGTATAATCTAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGACTTGAGGAGACTGGGATTCTAAAATAAGTTTTCCTTTAATTTGCATGTATATGTATAATCTAACTAAAAGGTCTGAATAAGTCTAGCAGATTCATGGTGAACTTGTAGGCAGATGTGTCATACATTACTGGAAAATCTTTGTTAATGTTTCATCCTAAATAGTATCTTATTAATCACTGCAGCTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAGGTATTGGCTCCTGTCTCAAATTTTGAGTTCTTGTTTCTTTCGAATGTTTTAGTTGGGAGCTTGATGTCAGTTACAATGGGGAATCGAATCACCTTGCACTCGTTTAGAGGTGGTAAGATCTTGATCTTATGGAGGCTGTTGTGAAACCGATGGGAGAAGGCTTGGACGTATAGCAAGATTAAAATAATTACATTCACCCTGACCTAGGTTTTGTCTGTCTTCATTCCCTTGTTTTTCCTGCACCCTGAGTACAGATGTTTTAGGACGCCCTTCTAATTTCCTGTCACCTTAACCCTTCTGACAGTTTCTTGTGCCTTTCTAATTTATTCATATATTGGGAGAGGTATCACATTTTCTAAGGTGAAAACTCTATTTATAGATGGGACGGGAACTGGACATCTTTACCTTTTTTTTGCATCTCATCCTTTTTCTTTACAGGCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACA</genome_strand>
        <mrna_strand>AACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAA.................................................................................................................................................................................................................................................................................................GAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAAAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTACCTACAGTTGGGGAGAGTCTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGACTGTATCATGGTCTTACAAACTTAAGATAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAAGGATCTGGTTTGTAAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCACTGCAGTTGCTATTAACTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207365" ref_strand="+" ref_description="SGN-E207365 [cLEC-36-O17]">
      <seq>acgctggatggacatgccattctgttggttcctataagaaaaagccaatgacagctgctgccttttctggagatggttctgttctggctgtagctgcagaaaaagttattacattgtgggatccggagaggaatattcttgtagctacagttggggagagtcttgagccaatctcttccttagcatttattgggaagtcagagtatgtggtaaccacatcgcaaggttctaaggctcaagtatcagtgtggagcatgtcaaagctgtctgtatcatggtcttacaaacttaagatagaagctgtaacttgtgcgatggatgattccttgtttgccgtcctggcccttctcccaaagccagttggacctgtgatgtctaatgaagccacaactctggatggcgatggagtgatcttgttattcagggccacagatcatgttcccgtagggatctggtttgtaagaaaggcaaaaggtgcttcacttgctttcattcgcggaagtcctaagtcagaggatgatgttactgatggcagatcagtgcagttgctattagcttacctcagcgttgatcatgaatatatgctttttgatccactcgacggccacacccatatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="71406" stop="74767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71706" g_stop="71742" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71743" i_stop="72031" i_length="289">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72032" g_stop="72161" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="167" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72162" i_stop="72550" i_length="389">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72551" g_stop="72683" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="300" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72684" i_stop="73711" i_length="1028">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73712" g_stop="73878" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="467" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73879" i_stop="74316" i_length="438">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74317" g_stop="74467" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="618" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E207365" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71706" e_stop="71742"/>
          <exon e_start="72032" e_stop="72161"/>
          <exon e_start="72551" e_stop="72683"/>
          <exon e_start="73712" e_stop="73878"/>
          <exon e_start="74317" e_stop="74467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAAGTATGTTAGGCTTAAATTTTAAAGGACGACTACATGGTCAGATAGAAAAATTGCCCAACCATGTAAAAAAATCCCAACTGTTTGAGAGAAGAAATTCTAGATGAAAATGCCACTTCCTTTGTTGTTCACTTTGTTTATTTGCACAAAACACTAGCAATTAGATGTCATTTGCATTTGGTGTTCTATGATATATGTCTGCTCATTCGAACTCTGCCATTGTTGATGACTACAACATAGTAAATTGATAGGACCTCTGTTTCTCTGTTTAATATGCTTTCTCCTTTAATAGGAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAGGTAAGTTCTTGGCATGCCAGTATTAATTTTACACTATTGACCTATAAAAAAATAACGATTTCACACTTCCTAGTTCAAATTTAAGTTGCTTGCCTTGGGGAAAGAAAGTTTTTCACCTAGTATTTGAAACCTTTTTACTTAAAGTGTTCTTTATGACTCACTTCTGAGTTGCTGTCTGGTAACTTCATTGGATGGCAAAGAAGTTAGCTGAGGGTTATCCTTTTTGTTAAACAATAAACGGAAATATGAGCACATAAAACAACCGAAAACAAATCTTGAAAATCTTAATTTACAGTTTTGATGCTTTCCTTGTGGCAATTTATACACCTTTATCATTCTTTCCGTATGTATACAATATTTTTCTCATTTGAACTGTTTTCTATGTGCAGCCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAGGTTTGTATATATCTCTTGTTTATCATACTTCGCCCCAATAAACTTTAAACAAATATAAACCACTTGCTTTTGGCAGCTTATGATAATTCTCTAATCTTATCATTTATTTCTAACGTTCTGCTTCTAGTTACTTAGAAAAAATGGATTAATATCAATGCAATTGTATGTCAGATACTGAAATTTGTTATTTAAGTGCAACTTGATCATTATAGTGCTAAATTCTCTATGTTCGGTGTTTTTAATGTCATGAAGCGTGTGCTTCACTTTTTCTTAAAGCCCCATGGATGCTTTTGTTTTTTGTGATTTTCTTCAAAACACTGGCATCGGAAGTGAATTGCCAACCATATTTCTCCATTTTTGAAGTTCTCATAGTTTTTGCTTCCGGAATTACGAGCTTGGCTCTTGAATTTGAATTGTTAGGTGTCATATGCAAATGGAAGTATGCAATCTTGCTAAAAAATTAACTGAAGCAAAGGGCTGGTGGATATATTGAATATGTAGTCTGGCCAATGGTAGATTATGCATTGTGATAGTCTTTTTATACCATGAATCTTGCTGCCCTTGTTATCAGAGTTGCATGGCTTGGAGTACAACTAGTAAGCTAATTCTCTTTCAAGCCAAACCCAGGACAGGTCTTTTGGGGAAATCTTAAGCTATCTTGCTAGTGCTAACAGTCCAATTTTGCTGCATTGGGTTTCCTATTAAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGAGTTGAGGAGACTCAGATTCTAAAATAAGTTTTCCTTAATTTGCACGTATATGTATAATCTAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGACTTGAGGAGACTGGGATTCTAAAATAAGTTTTCCTTTAATTTGCATGTATATGTATAATCTAACTAAAAGGTCTGAATAAGTCTAGCAGATTCATGGTGAACTTGTAGGCAGATGTGTCATACATTACTGGAAAATCTTTGTTAATGTTTCATCCTAAATAGTATCTTATTAATCACTGCAGCTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAGGTATTGGCTCCTGTCTCAAATTTTGAGTTCTTGTTTCTTTCGAATGTTTTAGTTGGGAGCTTGATGTCAGTTACAATGGGGAATCGAATCACCTTGCACTCGTTTAGAGGTGGTAAGATCTTGATCTTATGGAGGCTGTTGTGAAACCGATGGGAGAAGGCTTGGACGTATAGCAAGATTAAAATAATTACATTCACCCTGACCTAGGTTTTGTCTGTCTTCATTCCCTTGTTTTTCCTGCACCCTGAGTACAGATGTTTTAGGACGCCCTTCTAATTTCCTGTCACCTTAACCCTTCTGACAGTTTCTTGTGCCTTTCTAATTTATTCATATATTGGGAGAGGTATCACATTTTCTAAGGTGAAAACTCTATTTATAGATGGGACGGGAACTGGACATCTTTACCTTTTTTTTGCATCTCATCCTTTTTCTTTACAGGCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATAC</genome_strand>
        <mrna_strand>ACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAA.................................................................................................................................................................................................................................................................................................GAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729162" ref_strand="+" ref_description="SGN-E729162 [LA20AG03]">
      <seq>tggacatgccattctgttggttcctataagaaaaagccaatgacagctgctgccttttctggagatggttctgttctggctgtagctgcagaaaaagttattacattgtgggatccggagaggaatattcttgtagctacagttggggagagtcttgagccaatctcttccttagcatttattgggaagtcagagtatgtggtaaccacatcgcaaggttctaaggctcaagtatcagtgtggagcatgtcaaagctgtctgtatcatggtcttacaaacttaagatagaagctgtaacttgtgcgatggatgattccttgtttgccgtcctggcccttctcccaaagccagttggacctgtgatgtctaatgaagccacaactctggatggcgatggagtgatcttgttattcagggccacagatcatgttcccgtagggatctggtttgtaagaaaggcaaaaggtgcttcacttgctttcattctcggaagtccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="71414" stop="74656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71714" g_stop="71742" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71743" i_stop="72031" i_length="289">
            <donor d_prob="0.545" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72032" g_stop="72161" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="159" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72162" i_stop="72550" i_length="389">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72551" g_stop="72683" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="292" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72684" i_stop="73711" i_length="1028">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73712" g_stop="73878" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="459" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73879" i_stop="74316" i_length="438">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74317" g_stop="74356" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="499" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E729162" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71714" e_stop="71742"/>
          <exon e_start="72032" e_stop="72161"/>
          <exon e_start="72551" e_stop="72683"/>
          <exon e_start="73712" e_stop="73878"/>
          <exon e_start="74317" e_stop="74356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACATGCCATTCTGTTGGTTCCTATAAGTATGTTAGGCTTAAATTTTAAAGGACGACTACATGGTCAGATAGAAAAATTGCCCAACCATGTAAAAAAATCCCAACTGTTTGAGAGAAGAAATTCTAGATGAAAATGCCACTTCCTTTGTTGTTCACTTTGTTTATTTGCACAAAACACTAGCAATTAGATGTCATTTGCATTTGGTGTTCTATGATATATGTCTGCTCATTCGAACTCTGCCATTGTTGATGACTACAACATAGTAAATTGATAGGACCTCTGTTTCTCTGTTTAATATGCTTTCTCCTTTAATAGGAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAGGTAAGTTCTTGGCATGCCAGTATTAATTTTACACTATTGACCTATAAAAAAATAACGATTTCACACTTCCTAGTTCAAATTTAAGTTGCTTGCCTTGGGGAAAGAAAGTTTTTCACCTAGTATTTGAAACCTTTTTACTTAAAGTGTTCTTTATGACTCACTTCTGAGTTGCTGTCTGGTAACTTCATTGGATGGCAAAGAAGTTAGCTGAGGGTTATCCTTTTTGTTAAACAATAAACGGAAATATGAGCACATAAAACAACCGAAAACAAATCTTGAAAATCTTAATTTACAGTTTTGATGCTTTCCTTGTGGCAATTTATACACCTTTATCATTCTTTCCGTATGTATACAATATTTTTCTCATTTGAACTGTTTTCTATGTGCAGCCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAGGTTTGTATATATCTCTTGTTTATCATACTTCGCCCCAATAAACTTTAAACAAATATAAACCACTTGCTTTTGGCAGCTTATGATAATTCTCTAATCTTATCATTTATTTCTAACGTTCTGCTTCTAGTTACTTAGAAAAAATGGATTAATATCAATGCAATTGTATGTCAGATACTGAAATTTGTTATTTAAGTGCAACTTGATCATTATAGTGCTAAATTCTCTATGTTCGGTGTTTTTAATGTCATGAAGCGTGTGCTTCACTTTTTCTTAAAGCCCCATGGATGCTTTTGTTTTTTGTGATTTTCTTCAAAACACTGGCATCGGAAGTGAATTGCCAACCATATTTCTCCATTTTTGAAGTTCTCATAGTTTTTGCTTCCGGAATTACGAGCTTGGCTCTTGAATTTGAATTGTTAGGTGTCATATGCAAATGGAAGTATGCAATCTTGCTAAAAAATTAACTGAAGCAAAGGGCTGGTGGATATATTGAATATGTAGTCTGGCCAATGGTAGATTATGCATTGTGATAGTCTTTTTATACCATGAATCTTGCTGCCCTTGTTATCAGAGTTGCATGGCTTGGAGTACAACTAGTAAGCTAATTCTCTTTCAAGCCAAACCCAGGACAGGTCTTTTGGGGAAATCTTAAGCTATCTTGCTAGTGCTAACAGTCCAATTTTGCTGCATTGGGTTTCCTATTAAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGAGTTGAGGAGACTCAGATTCTAAAATAAGTTTTCCTTAATTTGCACGTATATGTATAATCTAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGACTTGAGGAGACTGGGATTCTAAAATAAGTTTTCCTTTAATTTGCATGTATATGTATAATCTAACTAAAAGGTCTGAATAAGTCTAGCAGATTCATGGTGAACTTGTAGGCAGATGTGTCATACATTACTGGAAAATCTTTGTTAATGTTTCATCCTAAATAGTATCTTATTAATCACTGCAGCTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAGGTATTGGCTCCTGTCTCAAATTTTGAGTTCTTGTTTCTTTCGAATGTTTTAGTTGGGAGCTTGATGTCAGTTACAATGGGGAATCGAATCACCTTGCACTCGTTTAGAGGTGGTAAGATCTTGATCTTATGGAGGCTGTTGTGAAACCGATGGGAGAAGGCTTGGACGTATAGCAAGATTAAAATAATTACATTCACCCTGACCTAGGTTTTGTCTGTCTTCATTCCCTTGTTTTTCCTGCACCCTGAGTACAGATGTTTTAGGACGCCCTTCTAATTTCCTGTCACCTTAACCCTTCTGACAGTTTCTTGTGCCTTTCTAATTTATTCATATATTGGGAGAGGTATCACATTTTCTAAGGTGAAAACTCTATTTATAGATGGGACGGGAACTGGACATCTTTACCTTTTTTTTGCATCTCATCCTTTTTCTTTACAGGCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTA</genome_strand>
        <mrna_strand>TGGACATGCCATTCTGTTGGTTCCTATAA.................................................................................................................................................................................................................................................................................................GAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGTGCTTCACTTGCTTTCATTCTCGGAAGTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338822" ref_strand="+" ref_description="SGN-E338822 [cTOE-21-P14]">
      <seq>ttacattgtgggatccggagaggaatattctgggggctacagttggggagagtcttgagccaatctcttccttagcatttattgggaagtcagagtatgtggtaaccacatcgcaaggttctaaggctcaagtatcagtgtggagcatgtcaaagctggctgtatcatggtcttacaaacttaagatagaagctgtaacttgtgcgacggatgattccttgtttgccgtcctggcccttctcccaaagccagttggacctgtgatgtctaatgaagccacaactctggatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="71803" stop="74111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72103" g_stop="72161" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72162" i_stop="72550" i_length="389">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72551" g_stop="72683" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="192" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72684" i_stop="73711" i_length="1028">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73712" g_stop="73811" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="292" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E338822" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72103" e_stop="72161"/>
          <exon e_start="72551" e_stop="72683"/>
          <exon e_start="73712" e_stop="73811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAGGTAAGTTCTTGGCATGCCAGTATTAATTTTACACTATTGACCTATAAAAAAATAACGATTTCACACTTCCTAGTTCAAATTTAAGTTGCTTGCCTTGGGGAAAGAAAGTTTTTCACCTAGTATTTGAAACCTTTTTACTTAAAGTGTTCTTTATGACTCACTTCTGAGTTGCTGTCTGGTAACTTCATTGGATGGCAAAGAAGTTAGCTGAGGGTTATCCTTTTTGTTAAACAATAAACGGAAATATGAGCACATAAAACAACCGAAAACAAATCTTGAAAATCTTAATTTACAGTTTTGATGCTTTCCTTGTGGCAATTTATACACCTTTATCATTCTTTCCGTATGTATACAATATTTTTCTCATTTGAACTGTTTTCTATGTGCAGCCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAGGTTTGTATATATCTCTTGTTTATCATACTTCGCCCCAATAAACTTTAAACAAATATAAACCACTTGCTTTTGGCAGCTTATGATAATTCTCTAATCTTATCATTTATTTCTAACGTTCTGCTTCTAGTTACTTAGAAAAAATGGATTAATATCAATGCAATTGTATGTCAGATACTGAAATTTGTTATTTAAGTGCAACTTGATCATTATAGTGCTAAATTCTCTATGTTCGGTGTTTTTAATGTCATGAAGCGTGTGCTTCACTTTTTCTTAAAGCCCCATGGATGCTTTTGTTTTTTGTGATTTTCTTCAAAACACTGGCATCGGAAGTGAATTGCCAACCATATTTCTCCATTTTTGAAGTTCTCATAGTTTTTGCTTCCGGAATTACGAGCTTGGCTCTTGAATTTGAATTGTTAGGTGTCATATGCAAATGGAAGTATGCAATCTTGCTAAAAAATTAACTGAAGCAAAGGGCTGGTGGATATATTGAATATGTAGTCTGGCCAATGGTAGATTATGCATTGTGATAGTCTTTTTATACCATGAATCTTGCTGCCCTTGTTATCAGAGTTGCATGGCTTGGAGTACAACTAGTAAGCTAATTCTCTTTCAAGCCAAACCCAGGACAGGTCTTTTGGGGAAATCTTAAGCTATCTTGCTAGTGCTAACAGTCCAATTTTGCTGCATTGGGTTTCCTATTAAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGAGTTGAGGAGACTCAGATTCTAAAATAAGTTTTCCTTAATTTGCACGTATATGTATAATCTAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGACTTGAGGAGACTGGGATTCTAAAATAAGTTTTCCTTTAATTTGCATGTATATGTATAATCTAACTAAAAGGTCTGAATAAGTCTAGCAGATTCATGGTGAACTTGTAGGCAGATGTGTCATACATTACTGGAAAATCTTTGTTAATGTTTCATCCTAAATAGTATCTTATTAATCACTGCAGCTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGG</genome_strand>
        <mrna_strand>TTACATTGTGGGATCCGGAGAGGAATATTCTGGGGGCTACAGTTGGGGAGAGTCTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGGCTGTATCATGGTCTTACAAACTTAAGATAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAACTTGTGCGACGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448326" ref_strand="+" ref_description="SGN-E448326 [cSTS-2-L11]">
      <seq>ggatccagagaggaatattcttgtggctacagttggggagagtcttgagccaatctcttccttagcatttattgggaagtcagagtatgttgtaaccacatcgcaaggttctaaggcacaagtatcagtgtggagcatgtcaaagctgtctgtatcatggtcttacaaacttaagatagaagctgtaacttgtgcgatggatgactccttgtttgccatcctggcccttctcccaaagccagttggacctctgatgtctaatgaagccacaactctggatggcgatggagtgatcttattattcagggctgcagatcatgttcccatagggatctggtttgtaagaaaggcaaaaggtgcttcacttgctttcattcgcggaagtcctaagtcagaggatggtgttactgatggcagatcagtgcagttgctattagcttacctcagcgttgatcatgaatatatgctttttgatccactcaacagccacacccatatacataagataagccgagaaaatcttgctgatcttgangaaacagggaagttcggatatgcatctctgtacggggacctaccagactttagcttagagagaaacaagctccatcgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="71813" stop="75685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72113" g_stop="72161" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72162" i_stop="72550" i_length="389">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72551" g_stop="72683" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="182" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72684" i_stop="73711" i_length="1028">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73712" g_stop="73878" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="349" r_length="167" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73879" i_stop="74316" i_length="438">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74317" g_stop="74509" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="542" r_length="193" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74510" i_stop="75310" i_length="801">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75311" g_stop="75385" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="616" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E448326" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72113" e_stop="72161"/>
          <exon e_start="72551" e_stop="72683"/>
          <exon e_start="73712" e_stop="73878"/>
          <exon e_start="74317" e_stop="74509"/>
          <exon e_start="75311" e_stop="75385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAGGTAAGTTCTTGGCATGCCAGTATTAATTTTACACTATTGACCTATAAAAAAATAACGATTTCACACTTCCTAGTTCAAATTTAAGTTGCTTGCCTTGGGGAAAGAAAGTTTTTCACCTAGTATTTGAAACCTTTTTACTTAAAGTGTTCTTTATGACTCACTTCTGAGTTGCTGTCTGGTAACTTCATTGGATGGCAAAGAAGTTAGCTGAGGGTTATCCTTTTTGTTAAACAATAAACGGAAATATGAGCACATAAAACAACCGAAAACAAATCTTGAAAATCTTAATTTACAGTTTTGATGCTTTCCTTGTGGCAATTTATACACCTTTATCATTCTTTCCGTATGTATACAATATTTTTCTCATTTGAACTGTTTTCTATGTGCAGCCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAGGTTTGTATATATCTCTTGTTTATCATACTTCGCCCCAATAAACTTTAAACAAATATAAACCACTTGCTTTTGGCAGCTTATGATAATTCTCTAATCTTATCATTTATTTCTAACGTTCTGCTTCTAGTTACTTAGAAAAAATGGATTAATATCAATGCAATTGTATGTCAGATACTGAAATTTGTTATTTAAGTGCAACTTGATCATTATAGTGCTAAATTCTCTATGTTCGGTGTTTTTAATGTCATGAAGCGTGTGCTTCACTTTTTCTTAAAGCCCCATGGATGCTTTTGTTTTTTGTGATTTTCTTCAAAACACTGGCATCGGAAGTGAATTGCCAACCATATTTCTCCATTTTTGAAGTTCTCATAGTTTTTGCTTCCGGAATTACGAGCTTGGCTCTTGAATTTGAATTGTTAGGTGTCATATGCAAATGGAAGTATGCAATCTTGCTAAAAAATTAACTGAAGCAAAGGGCTGGTGGATATATTGAATATGTAGTCTGGCCAATGGTAGATTATGCATTGTGATAGTCTTTTTATACCATGAATCTTGCTGCCCTTGTTATCAGAGTTGCATGGCTTGGAGTACAACTAGTAAGCTAATTCTCTTTCAAGCCAAACCCAGGACAGGTCTTTTGGGGAAATCTTAAGCTATCTTGCTAGTGCTAACAGTCCAATTTTGCTGCATTGGGTTTCCTATTAAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGAGTTGAGGAGACTCAGATTCTAAAATAAGTTTTCCTTAATTTGCACGTATATGTATAATCTAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGACTTGAGGAGACTGGGATTCTAAAATAAGTTTTCCTTTAATTTGCATGTATATGTATAATCTAACTAAAAGGTCTGAATAAGTCTAGCAGATTCATGGTGAACTTGTAGGCAGATGTGTCATACATTACTGGAAAATCTTTGTTAATGTTTCATCCTAAATAGTATCTTATTAATCACTGCAGCTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAGGTATTGGCTCCTGTCTCAAATTTTGAGTTCTTGTTTCTTTCGAATGTTTTAGTTGGGAGCTTGATGTCAGTTACAATGGGGAATCGAATCACCTTGCACTCGTTTAGAGGTGGTAAGATCTTGATCTTATGGAGGCTGTTGTGAAACCGATGGGAGAAGGCTTGGACGTATAGCAAGATTAAAATAATTACATTCACCCTGACCTAGGTTTTGTCTGTCTTCATTCCCTTGTTTTTCCTGCACCCTGAGTACAGATGTTTTAGGACGCCCTTCTAATTTCCTGTCACCTTAACCCTTCTGACAGTTTCTTGTGCCTTTCTAATTTATTCATATATTGGGAGAGGTATCACATTTTCTAAGGTGAAAACTCTATTTATAGATGGGACGGGAACTGGACATCTTTACCTTTTTTTTGCATCTCATCCTTTTTCTTTACAGGCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTGAGGAAACAGGTGTGTCCCGTCTTCTCTGCCTAAGTTCATCTGACACTAAGCTTTTATGTATTTCAGTGTCTGGTGTCTATTAATTTGGGGATGTACATGGGCCTTTTTTGGGTTATTTTATGTGATAGGTTGCTTCAGAATACTTTGGATTGGATCAATATACCAAAGTACTTGAAATAAACCTTGTTTTTAAAAACTTTATAATGGGTGCTACAAGCCTTAAAATGACGGGTCCAGAGGCACAAAGATGTATGGTTGCTGAATGCGTTGTGATAAGAAGTCCACTACTACAACTCATTACTAAGTTGGATCAGCTATATATTAATCCTCATTTCATCATTTAAACTCATATTCAATCATCATCTTAACAAATAAAATACGACATGTCCTGTGATAACCTTACGAGAGAAAGGGATTGGGTTTGATGTATTTGTTCTCCTCTGCCCACAAGGTCCTTGTTTCTTCATGGCATGATTGTCAGATCAAGCACATATTCTTGAAAATCTGTACCAAAATCTGTGGATTGATGATATTTAAGAGGAAACAAGCTCTATCTCTAGAACATATATTCGCTGGTAAAATCAGATGATGCATTATTTATAGCTTTAACAAGGAGGTGGGGGGTTTGGATAAGAGGGCTAAGGGGAAGGGCTGCATTAGGGAATTGAACACCTACCCGACTGAGCTGTAGGGCAATTCTCTGCAGGTGAAATATCCTGATACTTTATAATAATCTTCAGAAAACAGTATTTCTTTTTTTAAAAAAGATAATTGTCATGACTGATGAAACTATATGCTATCTATTTGCAGGGAAGTTCGGATATGCATCTCTGTACGGGGACCTACCAGACTTTAGCTTAGAGAGAAAACAAGCTGCATCGATCA</genome_strand>
        <mrna_strand>GGATCCAGAGAGGAATATTCTTGTGGCTACAGTTGGGGAGAGTCTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTTGTAACCACATCGCAAGGTTCTAAGGCACAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAACTTGTGCGATGGATGACTCCTTGTTTGCCATCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTCTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTATTATTCAGGGCTGCAGATCATGTTCCCATAGGGATCTGGTTTGTAAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGGTGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCAACAGCCACACCCATATACATAAGATAAGCCGAGAAAATCTTGCTGATCTTGANGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTTCGGATATGCATCTCTGTACGGGGACCTACCAGACTTTAGCTTAGAGAG-AAACAAGCTCCATCGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448242" ref_strand="+" ref_description="SGN-E448242 [cSTS-2-K12]">
      <seq>ggatccacagaggaatattcttgtggctacagtcggggagagtcttgatccactctgttacttagcatttattgggaagtcagagtatgttgtaaccacgtcgcaggggtctaaagcacaagtatcattgtggagcatgtcaaagctgtctgaatcatgggctgacaaactaaagatagaatctgtaacttgtgcgatcgatgactccttgtatgacatcctggcccttctcccaaagccagttggacctctgatgtctaatgaagccacaactctggatggcgatggagtgatcttattattcagggctgcaaatcatgttcccatacggatctggtttgtaagaaaagcaaaaggcgcttcacttgctttcattcgcggaagtcctaattcatatgatggtgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="71813" stop="74676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72113" g_stop="72161" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72162" i_stop="72550" i_length="389">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72551" g_stop="72683" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="182" r_length="133" r_score="0.887"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72684" i_stop="73711" i_length="1028">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73712" g_stop="73878" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="349" r_length="167" r_score="0.922"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73879" i_stop="74316" i_length="438">
            <donor d_prob="0.962" d_score="0.88"/>
            <acceptor a_prob="0.979" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74317" g_stop="74376" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="409" r_length="60" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E448242" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72113" e_stop="72161"/>
          <exon e_start="72551" e_stop="72683"/>
          <exon e_start="73712" e_stop="73878"/>
          <exon e_start="74317" e_stop="74376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAGGTAAGTTCTTGGCATGCCAGTATTAATTTTACACTATTGACCTATAAAAAAATAACGATTTCACACTTCCTAGTTCAAATTTAAGTTGCTTGCCTTGGGGAAAGAAAGTTTTTCACCTAGTATTTGAAACCTTTTTACTTAAAGTGTTCTTTATGACTCACTTCTGAGTTGCTGTCTGGTAACTTCATTGGATGGCAAAGAAGTTAGCTGAGGGTTATCCTTTTTGTTAAACAATAAACGGAAATATGAGCACATAAAACAACCGAAAACAAATCTTGAAAATCTTAATTTACAGTTTTGATGCTTTCCTTGTGGCAATTTATACACCTTTATCATTCTTTCCGTATGTATACAATATTTTTCTCATTTGAACTGTTTTCTATGTGCAGCCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAGGTTTGTATATATCTCTTGTTTATCATACTTCGCCCCAATAAACTTTAAACAAATATAAACCACTTGCTTTTGGCAGCTTATGATAATTCTCTAATCTTATCATTTATTTCTAACGTTCTGCTTCTAGTTACTTAGAAAAAATGGATTAATATCAATGCAATTGTATGTCAGATACTGAAATTTGTTATTTAAGTGCAACTTGATCATTATAGTGCTAAATTCTCTATGTTCGGTGTTTTTAATGTCATGAAGCGTGTGCTTCACTTTTTCTTAAAGCCCCATGGATGCTTTTGTTTTTTGTGATTTTCTTCAAAACACTGGCATCGGAAGTGAATTGCCAACCATATTTCTCCATTTTTGAAGTTCTCATAGTTTTTGCTTCCGGAATTACGAGCTTGGCTCTTGAATTTGAATTGTTAGGTGTCATATGCAAATGGAAGTATGCAATCTTGCTAAAAAATTAACTGAAGCAAAGGGCTGGTGGATATATTGAATATGTAGTCTGGCCAATGGTAGATTATGCATTGTGATAGTCTTTTTATACCATGAATCTTGCTGCCCTTGTTATCAGAGTTGCATGGCTTGGAGTACAACTAGTAAGCTAATTCTCTTTCAAGCCAAACCCAGGACAGGTCTTTTGGGGAAATCTTAAGCTATCTTGCTAGTGCTAACAGTCCAATTTTGCTGCATTGGGTTTCCTATTAAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGAGTTGAGGAGACTCAGATTCTAAAATAAGTTTTCCTTAATTTGCACGTATATGTATAATCTAAAAAAGAATTGCTGCTTTGGAATAGGAAAGCAGGAAATGACTTGAGGAGACTGGGATTCTAAAATAAGTTTTCCTTTAATTTGCATGTATATGTATAATCTAACTAAAAGGTCTGAATAAGTCTAGCAGATTCATGGTGAACTTGTAGGCAGATGTGTCATACATTACTGGAAAATCTTTGTTAATGTTTCATCCTAAATAGTATCTTATTAATCACTGCAGCTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAGGTATTGGCTCCTGTCTCAAATTTTGAGTTCTTGTTTCTTTCGAATGTTTTAGTTGGGAGCTTGATGTCAGTTACAATGGGGAATCGAATCACCTTGCACTCGTTTAGAGGTGGTAAGATCTTGATCTTATGGAGGCTGTTGTGAAACCGATGGGAGAAGGCTTGGACGTATAGCAAGATTAAAATAATTACATTCACCCTGACCTAGGTTTTGTCTGTCTTCATTCCCTTGTTTTTCCTGCACCCTGAGTACAGATGTTTTAGGACGCCCTTCTAATTTCCTGTCACCTTAACCCTTCTGACAGTTTCTTGTGCCTTTCTAATTTATTCATATATTGGGAGAGGTATCACATTTTCTAAGGTGAAAACTCTATTTATAGATGGGACGGGAACTGGACATCTTTACCTTTTTTTTGCATCTCATCCTTTTTCTTTACAGGCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACT</genome_strand>
        <mrna_strand>GGATCCACAGAGGAATATTCTTGTGGCTACAGTCGGGGAGAGTCTTGAT.....................................................................................................................................................................................................................................................................................................................................................................................................CCACTCTGTTACTTAGCATTTATTGGGAAGTCAGAGTATGTTGTAACCACGTCGCAGGGGTCTAAAGCACAAGTATCATTGTGGAGCATGTCAAAGCTGTCTGAATCATGGGCTGACAAACTAAAGATAGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAACTTGTGCGATCGATGACTCCTTGTATGACATCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTCTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTATTATTCAGGGCTGCAAATCATGTTCCCATACGGATCTGGTTTGTAAGAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGCGCTTCACTTGCTTTCATTCGCGGAAGTCCTAATTCATATGATGGTGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703779" ref_strand="+" ref_description="SGN-E703779 [FA22BG08]">
      <seq>ccacaactctggatggcgatggagtgatcttgttattcagggccacagatcatgttcccgtagggatctggtttgtaagaaaggcaaaaggtgcttcacttgctttcattcgcggaagtcctaagtcagaggatgatgttactgatggcagatcagtgcagttgctattagcttacctcagcgttgatcatgaatatatgctttttgatccactcgacggccacacccatatacataagataagccgaggaaatcttgctgatcttgaggaaacagggaagttcggatatgcatctctgtacggggacctaccagactttagcttagagagaaaacaagctgcatcgattacatcagtaccatcagaaagatattgggagacgctattcagtggaccatctcacaatcttcctcctcttgctaaattgtgttccacattcctggaatcattactacagaagagtagtgcagttgagtgattggcagtagtgtccggttgagctttgttgcaaggcagacttgctaatctatgctcatcgatgaaacgacaacattgttgttaggcttgatcccattgtagccgagagagagctgcctgacatgcacatgcacatgcacatagtaatactagctcgaaagtgtgaacagtggggtcgacttataatctggtctaagaacgagccagcccgttcagttaaagctttcgagttcaagaaaaagatgccctgatcgagtgggtttaaaattttggtagcacgatttgatgtgtcgtctggatattgaattttttgtagcttgcaacttattgagcctgcagggctaagtaggcatactcaatactgaatagatgttcttttttgacaatatttggtcatgtgttgtgtttaatttatacatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="73496" stop="76236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73796" g_stop="73878" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73879" i_stop="74316" i_length="438">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74317" g_stop="74509" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="276" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74510" i_stop="75310" i_length="801">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75311" g_stop="75936" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="902" r_length="626" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E703779" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73796" e_stop="73878"/>
          <exon e_start="74317" e_stop="74509"/>
          <exon e_start="75311" e_stop="75936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAGGTATTGGCTCCTGTCTCAAATTTTGAGTTCTTGTTTCTTTCGAATGTTTTAGTTGGGAGCTTGATGTCAGTTACAATGGGGAATCGAATCACCTTGCACTCGTTTAGAGGTGGTAAGATCTTGATCTTATGGAGGCTGTTGTGAAACCGATGGGAGAAGGCTTGGACGTATAGCAAGATTAAAATAATTACATTCACCCTGACCTAGGTTTTGTCTGTCTTCATTCCCTTGTTTTTCCTGCACCCTGAGTACAGATGTTTTAGGACGCCCTTCTAATTTCCTGTCACCTTAACCCTTCTGACAGTTTCTTGTGCCTTTCTAATTTATTCATATATTGGGAGAGGTATCACATTTTCTAAGGTGAAAACTCTATTTATAGATGGGACGGGAACTGGACATCTTTACCTTTTTTTTGCATCTCATCCTTTTTCTTTACAGGCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTGAGGAAACAGGTGTGTCCCGTCTTCTCTGCCTAAGTTCATCTGACACTAAGCTTTTATGTATTTCAGTGTCTGGTGTCTATTAATTTGGGGATGTACATGGGCCTTTTTTGGGTTATTTTATGTGATAGGTTGCTTCAGAATACTTTGGATTGGATCAATATACCAAAGTACTTGAAATAAACCTTGTTTTTAAAAACTTTATAATGGGTGCTACAAGCCTTAAAATGACGGGTCCAGAGGCACAAAGATGTATGGTTGCTGAATGCGTTGTGATAAGAAGTCCACTACTACAACTCATTACTAAGTTGGATCAGCTATATATTAATCCTCATTTCATCATTTAAACTCATATTCAATCATCATCTTAACAAATAAAATACGACATGTCCTGTGATAACCTTACGAGAGAAAGGGATTGGGTTTGATGTATTTGTTCTCCTCTGCCCACAAGGTCCTTGTTTCTTCATGGCATGATTGTCAGATCAAGCACATATTCTTGAAAATCTGTACCAAAATCTGTGGATTGATGATATTTAAGAGGAAACAAGCTCTATCTCTAGAACATATATTCGCTGGTAAAATCAGATGATGCATTATTTATAGCTTTAACAAGGAGGTGGGGGGTTTGGATAAGAGGGCTAAGGGGAAGGGCTGCATTAGGGAATTGAACACCTACCCGACTGAGCTGTAGGGCAATTCTCTGCAGGTGAAATATCCTGATACTTTATAATAATCTTCAGAAAACAGTATTTCTTTTTTTAAAAAAGATAATTGTCATGACTGATGAAACTATATGCTATCTATTTGCAGGGAAGTTCGGATATGCATCTCTGTACGGGGACCTACCAGACTTTAGCTTAGAGAGAAAACAAGCTGCATCGATCACATCAGTACCATCAGAAAGATATTGGGAGACGCTATTCAGTGGACCATCTCACAATCTTCCTCCTCTTGCTAAATTGTGTTCCACATTCCTGGAATCATTACTACAGAAGAGTAGTGCAGTTGAGTGATTGGCAGTAGTGTCCGGTTGAGCTTTGTTGCAAGGCAGACTTGCTAATCTATGCTCATCGATGAAACGACAACATTGTTGTTAGGCTTGATCCCATTGTAGCCGAGAGAGAGCTGCCTGACATGCACATGCACATGCACATAGTAATACTAGCTCGAAAGTGTGAACAGTGGGGTCGACTTATAATCTGGTCTAAGAACGAGCCAGCCCGTTCAGTTAAAGCTTTCGAGTTCAAGAAAAAGATGCCCTGATCGAGTGGGTTTAAAATTTTGGTAGCACGATTTGATGTGTCGTCTGGATATTGAATTTTTTGTAGCTTGCAACTTATTGAGCCTGCAGGGCTAAGTAGGCATACTCAATACTGAATAGATGTTCTTTTTTGACAATATTTGGTCATGTGTTGTGTTTAATTATAACATTTATA</genome_strand>
        <mrna_strand>CCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTGAGGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTTCGGATATGCATCTCTGTACGGGGACCTACCAGACTTTAGCTTAGAGAGAAAACAAGCTGCATCGATTACATCAGTACCATCAGAAAGATATTGGGAGACGCTATTCAGTGGACCATCTCACAATCTTCCTCCTCTTGCTAAATTGTGTTCCACATTCCTGGAATCATTACTACAGAAGAGTAGTGCAGTTGAGTGATTGGCAGTAGTGTCCGGTTGAGCTTTGTTGCAAGGCAGACTTGCTAATCTATGCTCATCGATGAAACGACAACATTGTTGTTAGGCTTGATCCCATTGTAGCCGAGAGAGAGCTGCCTGACATGCACATGCACATGCACATAGTAATACTAGCTCGAAAGTGTGAACAGTGGGGTCGACTTATAATCTGGTCTAAGAACGAGCCAGCCCGTTCAGTTAAAGCTTTCGAGTTCAAGAAAAAGATGCCCTGATCGAGTGGGTTTAAAATTTTGGTAGCACGATTTGATGTGTCGTCTGGATATTGAATTTTTTGTAGCTTGCAACTTATTGAGCCTGCAGGGCTAAGTAGGCATACTCAATACTGAATAGATGTTCTTTTTTGACAATATTTGGTCATGTGTTGTGTTTAATTTATACATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422895" ref_strand="-" ref_description="SGN-E422895 [STM-41-M21]">
      <seq>gcagatcatgttcccgtagggacctggtttgtaagaaaggcaaaaggtgcttcacttgctttcattcgcggaagtcctaagtcagaggatggtgttactgatggcagatcagtgcagttgctattagcttacctcagcgttgatcatgaatatatgctttttgatccactngacagccacancccatatacataagataagccgaggaaatcttgctgatcttgaggaaacagggaagttcggatatgcatctctgtacggggacctaccagactttagcttagagagaaaacaagctccatcgatcacatcagtaccatcagaaagatattgggagacgctattcagtggaccatctcacaatcttcctcctcttgctaaattgtgttccacattcctggaatcattactacagaagaggagtagtgcaattgagtgattgccagtagtgtccggttgagctttgttgcaaggcagacttgctaatctacgctcattgatgaaacagcaacattgttgttaggcttgatcccattgtagccgagagagagctgcctgacatgcacatagtaatactagctcgaaagtgtgaacagtggggtcgacttataatctggtctaagaacgagccagccgttcagttaaggctttcgagttcaagaaaaagatgcccagattgagtgggtttaaaattttggtagcacgattagatgtcttgtctggatactgaatttttgtagcttgtaacttattgagcctgcaaggctcaagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="73541" stop="76161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73840" g_stop="73878" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73879" i_stop="74316" i_length="438">
            <donor d_prob="0.962" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74317" g_stop="74509" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="233" r_length="194" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74510" i_stop="75310" i_length="801">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75311" g_stop="75861" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="774" r_length="541" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E422895" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422895" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73840" e_stop="73878"/>
          <exon e_start="74317" e_stop="74509"/>
          <exon e_start="75311" e_stop="75861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAGGTATTGGCTCCTGTCTCAAATTTTGAGTTCTTGTTTCTTTCGAATGTTTTAGTTGGGAGCTTGATGTCAGTTACAATGGGGAATCGAATCACCTTGCACTCGTTTAGAGGTGGTAAGATCTTGATCTTATGGAGGCTGTTGTGAAACCGATGGGAGAAGGCTTGGACGTATAGCAAGATTAAAATAATTACATTCACCCTGACCTAGGTTTTGTCTGTCTTCATTCCCTTGTTTTTCCTGCACCCTGAGTACAGATGTTTTAGGACGCCCTTCTAATTTCCTGTCACCTTAACCCTTCTGACAGTTTCTTGTGCCTTTCTAATTTATTCATATATTGGGAGAGGTATCACATTTTCTAAGGTGAAAACTCTATTTATAGATGGGACGGGAACTGGACATCTTTACCTTTTTTTTGCATCTCATCCTTTTTCTTTACAGGCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACA-CCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTGAGGAAACAGGTGTGTCCCGTCTTCTCTGCCTAAGTTCATCTGACACTAAGCTTTTATGTATTTCAGTGTCTGGTGTCTATTAATTTGGGGATGTACATGGGCCTTTTTTGGGTTATTTTATGTGATAGGTTGCTTCAGAATACTTTGGATTGGATCAATATACCAAAGTACTTGAAATAAACCTTGTTTTTAAAAACTTTATAATGGGTGCTACAAGCCTTAAAATGACGGGTCCAGAGGCACAAAGATGTATGGTTGCTGAATGCGTTGTGATAAGAAGTCCACTACTACAACTCATTACTAAGTTGGATCAGCTATATATTAATCCTCATTTCATCATTTAAACTCATATTCAATCATCATCTTAACAAATAAAATACGACATGTCCTGTGATAACCTTACGAGAGAAAGGGATTGGGTTTGATGTATTTGTTCTCCTCTGCCCACAAGGTCCTTGTTTCTTCATGGCATGATTGTCAGATCAAGCACATATTCTTGAAAATCTGTACCAAAATCTGTGGATTGATGATATTTAAGAGGAAACAAGCTCTATCTCTAGAACATATATTCGCTGGTAAAATCAGATGATGCATTATTTATAGCTTTAACAAGGAGGTGGGGGGTTTGGATAAGAGGGCTAAGGGGAAGGGCTGCATTAGGGAATTGAACACCTACCCGACTGAGCTGTAGGGCAATTCTCTGCAGGTGAAATATCCTGATACTTTATAATAATCTTCAGAAAACAGTATTTCTTTTTTTAAAAAAGATAATTGTCATGACTGATGAAACTATATGCTATCTATTTGCAGGGAAGTTCGGATATGCATCTCTGTACGGGGACCTACCAGACTTTAGCTTAGAGAGAAAACAAGCTGCATCGATCACATCAGTACCATCAGAAAGATATTGGGAGACGCTATTCAGTGGACCATCTCACAATCTTCCTCCTCTTGCTAAATTGTGTTCCACATTCCTGGAATCATTACTACAG-A-A-GAGTAGTGCAGTTGAGTGATTGGCAGTAGTGTCCGGTTGAGCTTTGTTGCAAGGCAGACTTGCTAATCTATGCTCATCGATGAAACGACAACATTGTTGTTAGGCTTGATCCCATTGTAGCCGAGAGAGAGCTGCCTGACATGCACATGCACATGCACATAGTAATACTAGCTCGAAAGTGTGAACAGTGGGGTCGACTTATAATCTGGTCTAAGAACGAGCCAGCCCGTTCAGTTAAAGCTTTCGAGTTCAAGAAAAAGATGCCCTGATCGAGTGGGTTTAAAATTTTGGTAGCACGATTTGATGTGTCGTCTGGATATTGAATTTTTTGTAGCTTGCAACTTATTGAGCCTGCAGGGCT-AAGTAG</genome_strand>
        <mrna_strand>GCAGATCATGTTCCCGTAGGGACCTGGTTTGTAAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGGTGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTNGACAGCCACANCCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTGAGGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTTCGGATATGCATCTCTGTACGGGGACCTACCAGACTTTAGCTTAGAGAGAAAACAAGCTCCATCGATCACATCAGTACCATCAGAAAGATATTGGGAGACGCTATTCAGTGGACCATCTCACAATCTTCCTCCTCTTGCTAAATTGTGTTCCACATTCCTGGAATCATTACTACAGAAGAGGAGTAGTGCAATTGAGTGATTGCCAGTAGTGTCCGGTTGAGCTTTGTTGCAAGGCAGACTTGCTAATCTACGCTCATTGATGAAACAGCAACATTGTTGTTAGGCTTGATCCCATTGTAGCCGAGAGAGA-------G-C-TGC-C-TG-ACATGCACATAGTAATACTAGCTCGAAAGTGTGAACAGTGGGGTCGACTTATAATCTGGTCTAAGAACGAGCCAG-CCGTTCAGTTAAGGCTTTCGAGTTCAAGAAAAAGATGCCCAGATTGAGTGGGTTTAAAATTTTGGTAGCACGATTAGATGTCTTGTCTGGATACTGAA-TTTTTGTAGCTTGTAACTTATTGAGCCTGCAAGGCTCAAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611909" ref_strand="+" ref_description="SGN-E611909 [61666]">
      <seq>tttaaatagcgactctattgcgcttataaatgttacaattaaacacaaggaccaagtattgtcaaaaaagaattcatacatctattcagtattagtattcctacttagccttgcaggctcagtaagttacaagctacaaaaaattcaatatccagacaagacatctaaccgtgctaccaaaattttaaacccactcaatctgggcatctttttcttgaactcgacagcttaaacggaacggctggctcgttcttagaccagattataagtcgaccccactgttcacactttcgagctagtattactatgtgcatgtgcatgtgcatgtcaggcagctctctctcggctacaatgggatcaagcctaacaacaatgttgccgtttcatcaatgagcatagattagaccagcaagtctgccttgcaacaaagctcaaccggacgctaggcaatcactcaactgcactactcttctgtagtaatgattccaggaatgtggaacacaatttagcaagaggaggaagattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="76260" stop="75137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75960" g_stop="75437" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E611909" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75960" e_stop="75437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAATAGCAACTCTATTGCGCTTATAAATGTTATAATTAAACACAACACATGACCAAATATTGTCAAAAAAG-A-----ACATCTATTCAGTATTGAGTATGCCTACTTAGCCCTGCAGGCTCAATAAGTTGCAAGCTACAAAAAATTCAATATCCAGACGACACATCAAATCGTGCTACCAAAATTTTAAACCCACTCGATCAGGGCATCTTTTTCTTGAACTCGAAAGCTTTAACTGAACGGGCTGGCTCGTTCTTAGACCAGATTATAAGTCGACCCCACTGTTCACACTTTCGAGCTAGTATTACTATGTGCATGTGCATGTGCATGTCAGGCAGCTCTCTCTCGGCTACAATGGGATCAAGCCTAACAACAATGTTGTCGTTTCATCGATGAGCATAGATT-----AGCAAGTCTGCCTTGCAACAAAGCTCAACCGGACACTACTGCCAATCACTCAACTGCACTACTCTTCTGTAGTAATGATTCCAGGAATGTGGAACACAATTTAGCAAGAGGAGGAAGATTGT</genome_strand>
        <mrna_strand>TTTAAATAGCGACTCTATTGCGCTTATAAATGTTACAATT-AA-AC-ACA-AGGACCAAGTATTGTCAAAAAAGAATTCATACATCTATTCAGTATT-AGTATTCCTACTTAGCCTTGCAGGCTCAGTAAGTTACAAGCTACAAAAAATTCAATATCCAGACAAGACATCTAACCGTGCTACCAAAATTTTAAACCCACTCAATCTGGGCATCTTTTTCTTGAACTCGACAGCTTAAACGGAAC-GGCTGGCTCGTTCTTAGACCAGATTATAAGTCGACCCCACTGTTCACACTTTCGAGCTAGTATTACTATGTGCATGTGCATGTGCATGTCAGGCAGCTCTCTCTCGGCTACAATGGGATCAAGCCTAACAACAATGTTGCCGTTTCATCAATGAGCATAGATTAGACCAGCAAGTCTGCCTTGCAACAAAGCTCAACCGGACGCTA--GGCAATCACTCAACTGCACTACTCTTCTGTAGTAATGATTCCAGGAATGTGGAACACAATTTAGCAAGAGGAGGAAGATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269331" ref_strand="+" ref_description="SGN-E269331 [cLEM-18-P9]">
      <seq>ggaaatgtcggtcatgctatgcaattagttgataaaatggaggaatatggatatccaacaaatactgtgacttacaattctcttataagaggactttgtatgagggggaacctgaacaagagcctgcaatttgtcgaaaagttgattcagaaagggttggtaccaaatgcatatacgtactctatattgcttgaggctagttataaagaaaaaggggttaatgaagcaatgttacttttagacaatattattgccaagggtggaaagcctaatttggttagttacaatgttctcttaactgggctgtgcaaagaaggaagaatagatgaagctaaacaattctttagaaacttgccatcaaaagggtttaatcctaacgttgtcagctataatatcttgttgaggagcttgtgttttgaaggacgttgggaagaagcgaatgagtttctggcagagatggttggagaagatcgttctccatcgattgtaacgtacaatatattgatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="77929" stop="79038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78229" g_stop="78738" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E269331" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78229" e_stop="78738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGTCGGTCATGCTATGCAATTAGTTGATAAAATGGAGGAATATGGATATCCAACAAATACTGTGACTTACAATTCTCTTATAAGAGGACTTTGTATGAGGGGGAACCTGAACAAGAGCCTGCAATTTGTCGAAAAGTTGATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTGAAGGACGTTGGGAGGAAGCGAATGAGTTTCTGGCAGAGATGGTTGGAGAAGATCGTTCTCCATCGATTGTAACGTACAATATATTGATCAGT</genome_strand>
        <mrna_strand>GGAAATGTCGGTCATGCTATGCAATTAGTTGATAAAATGGAGGAATATGGATATCCAACAAATACTGTGACTTACAATTCTCTTATAAGAGGACTTTGTATGAGGGGGAACCTGAACAAGAGCCTGCAATTTGTCGAAAAGTTGATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTGAAGGACGTTGGGAAGAAGCGAATGAGTTTCTGGCAGAGATGGTTGGAGAAGATCGTTCTCCATCGATTGTAACGTACAATATATTGATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551503" ref_strand="+" ref_description="SGN-E551503 [TUS-11-E14]">
      <seq>cctgcaatttgtccaaaagttcattcagaaagggttggtaccaaatgcatatacgtactctatattgcttgaggctagttataaagaaaaaggggttaatgaagcaatgttacttttagacaatattattgccaagggtggaaagcctaatttggttagttacaatgttctcttaactgggctgtgcggagaaggaagaatagatgaagctaaacaattctttagaaacttgccatcaaaagggtttaatcctaacgttgtcagctataatatcttgttgaggagcttgtgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="78051" stop="78946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78351" g_stop="78646" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E551503" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78351" e_stop="78646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCAATTTGTCGAAAAGTTGATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTG</genome_strand>
        <mrna_strand>CCTGCAATTTGTCCAAAAGTTCATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCGGAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688226" ref_strand="+" ref_description="SGN-E688226 [t3_tus_11_e14]">
      <seq>cctgcaatttgtccaaaagctcattcagaaagggttggtaccaaatgcatatacgtactctatattgcttgaggctagttataaagaaaaaggggttaatgaagcaatgttacttttagacaatattattgccaagggtggaaagcctaatttggttagttacaatgttctcttaactgggctgtgcaaagaaggaagaatagatgaagctaaacaattctttagaaacttgccatcaaaagggtttaatcctaacgttgtcagctataatatcttgttgaggagcttgtgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="78051" stop="78946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78351" g_stop="78646" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E688226" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78351" e_stop="78646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCAATTTGTCGAAAAGTTGATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTG</genome_strand>
        <mrna_strand>CCTGCAATTTGTCCAAAAGCTCATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689617" ref_strand="+" ref_description="SGN-E689617 [LH_Ea01F23]">
      <seq>tcacggatttactccagactcttacacctattcttcaccgatcagaggattatgcttggaaaagatgttggtggctgctgtcgatgtattctacatgatggaagaaaatggatataggcctgatattgacaatttcaatgcgcttgtgcttggactatgcaaatccaaaagaacagacttgtcattaaaggtatttgaggacatgatcagcaaaggttatatgcctaatgagataacatataccattctagtcgaaggcatcatccatgaagatcacaaggagcttgcatcagtagtcctaagggaactgcaccggaaagaagtaataagtagaaatactgttgaaagacttgctatgcggtatgagcttgaagatatggcagtatgctgatctttcacaaaaccaatggcgtgtggtcacaggatgagaaactaacaaaggttcttcattagcaaatgctaaatacaccaaataaacaaagttattctcatgctgtatgtcagatggtaactttacacaactaataaaccttcgggataattggttttcagatatggtagttgattcatagtaggcttcaaataggtgagtggtgaaacttgtcaattctcactagcttactcttgctactcaattgctgttacaaaaaaagttgtatatcctaaatcctttatctaaagctttctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="78814" stop="80076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79113" g_stop="79769" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E689617" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79113" e_stop="79769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATGTTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTATAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCTTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</genome_strand>
        <mrna_strand>TCACGGATTTACTCCAGACTCTTACACCTATTCTTCACCGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATATTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTCTAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCGGTATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCGTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693457" ref_strand="+" ref_description="SGN-E693457 [LH_Ea01F23](-)">
      <seq>cacggatttactccagactcttacacctattcttcattgatcagaggattatgccttggaaaagatgttggtggctgctgtcgatgtattctacatgatggaagaaaatggatataggcctgatattgacaatttcaatgcgcttgtgcttggactatgcaaatccaaaagaacagacttgtcattaaaggtatttgaggacatgatcagcaaaggttatatgcctaatgagataacatataccattctagtcgaaggcatcatccatgaagatcacaaggagcttgcatcagtagtcctaagggaactgcaccggaaagaagtaataagtagaaatactgttgaaagacttgctatgcaatatgagcttgaagatatggcagtatgctgatctttcacaaaaccaatggcgtgtggtcacaggatgagaaactaacaaaggttcttcattagcaaatgctaaatacaccaaataaacaaagttattctcatgctgtatgtcagacccccccctcacacaactaataaaccttcgggataattggttttcagatatggtagttgattcatagtaggcttcaaataggtgagtggtgaaacttgtcaattctcactagcttactgttgctactcaattgctgttacaaaaaaagtggntctatataggtcctttatctaaagctttctttctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="78814" stop="80075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79114" g_stop="79769" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="692" polyA_stop="710"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E693457" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79114" e_stop="79769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATG-CTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATGTTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTATAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCTTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</genome_strand>
        <mrna_strand>CACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATATTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTCTAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCGTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGACCCCCCCCTCACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTGTTGCTACTCAATTGCTGTTACAAAAAAAGTGGN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595215" ref_strand="+" ref_description="SGN-E595215 [38483]">
      <seq>gctgatctttcacaaaaacaacggcgtgtggtcacaggatgagaaactaacaaaggttattcatcagcaaatgctaaatacaccaaatcaacaaaattattttcatgctgtatgtcagatgggaactttacacaactaataaaccttcgggataattggttttcagatagggtagttgattcatagtcggctttaaataggtgagtggtgaaacttgtcgattctcactagcttgctcttgctactcaattgctgttacaaaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="79199" stop="80064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79499" g_stop="79764" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E595215" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79499" e_stop="79764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATCTTTCACAAAACCAATGGCTTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAA</genome_strand>
        <mrna_strand>GCTGATCTTTCACAAAAACAACGGCGTGTGGTCACAGGATGAGAAACTAACAAAGGTTATTCATCAGCAAATGCTAAATACACCAAATCAACAAAATTATTTTCATGCTGTATGTCAGATGGGAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATAGGGTAGTTGATTCATAGTCGGCTTTAAATAGGTGAGTGGTGAAACTTGTCGATTCTCACTAGCTTGCTCTTGCTACTCAATTGCTGTTACAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351030" ref_strand="+" ref_description="SGN-E351030 [cTOS-6-A16]">
      <seq>gagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttattacttcatgtgatgttctgatgatgtacaagtgtgaagtgaaaccctggttggttttgatctagtatgatcattcttgtgcttgcttggttcaagaatatcaaggcgtattgaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="82460" stop="80219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82160" g_stop="82141" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82140" i_stop="81013" i_length="1128">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81012" g_stop="80531" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="502" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="524"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E351030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82160" e_stop="82141"/>
          <exon e_start="81012" e_stop="80531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGAAGTGAAACCCTGGTTGGTTTTGATCTAGTATGATCATTCTTGTGCTTGCTTGGTTCAAGAATATCAAG</genome_strand>
        <mrna_strand>GAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGAAGTGAAACCCTGGTTGGTTTTGATCTAGTATGATCATTCTTGTGCTTGCTTGGTTCAAGAATATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351154" ref_strand="+" ref_description="SGN-E351154 [cTOS-6-A19]">
      <seq>gagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttattacttcatgtgatgttctgatgatgtacaagtgtgaagtgaaaccctggttggttttgatctagtatgatcattcttgtgcttgcttggttcaagaatatcaaggcgtattgaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="82460" stop="80219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82160" g_stop="82141" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82140" i_stop="81013" i_length="1128">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81012" g_stop="80531" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="502" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="524"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E351154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82160" e_stop="82141"/>
          <exon e_start="81012" e_stop="80531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGAAGTGAAACCCTGGTTGGTTTTGATCTAGTATGATCATTCTTGTGCTTGCTTGGTTCAAGAATATCAAG</genome_strand>
        <mrna_strand>GAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGAAGTGAAACCCTGGTTGGTTTTGATCTAGTATGATCATTCTTGTGCTTGCTTGGTTCAAGAATATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338668" ref_strand="+" ref_description="SGN-E338668 [cTOE-15-F12]">
      <seq>gagggtaaagagagagtcggcggtgaattttgagcaagccatgagagccaaagtggaagaagaagccgtatgaggagactgaaaaggaagccgccagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctacctgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttacctatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttaccatttcatttgaataaattttggctttgaacgttattacttcatgtgatgttctgatgatgtacaagtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="82490" stop="80299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82193" g_stop="82141" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82140" i_stop="81013" i_length="1128">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81012" g_stop="80599" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="473" r_length="420" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E338668" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82193" e_stop="82141"/>
          <exon e_start="81012" e_stop="80599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAG-CATGAGAG-CAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAG-CGTATGAGGAGACTGAAAAGGAAG-CG-CAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTA-CTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTA-CTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTA-CATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGA</genome_strand>
        <mrna_strand>GA-G-GGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCCATGAGAGCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCCGTATGAGGAGACTGAAAAGGAAGCCGCCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACCTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACCTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACCATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339640" ref_strand="+" ref_description="SGN-E339640 [cTOE-16-P12]">
      <seq>gaagacgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttattacttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="82496" stop="80328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82196" g_stop="82141" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82140" i_stop="81013" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81012" g_stop="80629" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="440" r_length="384" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="451"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E339640" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82196" e_stop="82141"/>
          <exon e_start="81012" e_stop="80629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTC</genome_strand>
        <mrna_strand>GAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734195" ref_strand="+" ref_description="SGN-E734195 [LB12AB06]">
      <seq>cggaagacgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="82498" stop="80336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82198" g_stop="82141" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82140" i_stop="81013" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81012" g_stop="80637" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="434" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="462"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E734195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82198" e_stop="82141"/>
          <exon e_start="81012" e_stop="80637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</genome_strand>
        <mrna_strand>CGGAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716767" ref_strand="+" ref_description="SGN-E716767 [FB17DH07]">
      <seq>cgagtacgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="82494" stop="80336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82197" g_stop="82141" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82140" i_stop="81013" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81012" g_stop="80637" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="433" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="447"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E716767" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82197" e_stop="82141"/>
          <exon e_start="81012" e_stop="80637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</genome_strand>
        <mrna_strand>CGAGTACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337581" ref_strand="+" ref_description="SGN-E337581 [cTOE-11-D1]">
      <seq>acgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaatttttggctttgaacgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="82492" stop="80333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82192" g_stop="82141" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82140" i_stop="81013" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81012" g_stop="80637" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="429" r_length="377" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="440"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E337581" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82192" e_stop="82141"/>
          <exon e_start="81012" e_stop="80637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAA-TTTTGGCTTTGAACGTT</genome_strand>
        <mrna_strand>ACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTTGGCTTTGAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302689" ref_strand="+" ref_description="SGN-E302689 [cLEY-1-E19](-)">
      <seq>ctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="81171" stop="80336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80871" g_stop="80637" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="236" polyA_stop="248"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E302689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80871" e_stop="80637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</genome_strand>
        <mrna_strand>CTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302688" ref_strand="+" ref_description="SGN-E302688 [cLEY-1-E19]">
      <seq>tgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttgaataaattttggctttgaacgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="81170" stop="80336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80870" g_stop="80637" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="235" polyA_stop="248"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E302688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80870" e_stop="80637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</genome_strand>
        <mrna_strand>TGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350258" ref_strand="+" ref_description="SGN-E350258 [cTOS-4-N3]">
      <seq>gacgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggatttctatttgtttggggttacatttcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="82493" stop="80360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82193" g_stop="82141" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82140" i_stop="81013" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81012" g_stop="80660" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="406" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E350258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82193" e_stop="82141"/>
          <exon e_start="81012" e_stop="80660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTG</genome_strand>
        <mrna_strand>GACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303524" ref_strand="+" ref_description="SGN-E303524 [cLEX-2-N17]">
      <seq>gaagacgaggtaaagagagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagaccagagatctaagtagagcagcagcaggggtccagatgcctactgtggtttcttggttgaaactgctgctttttataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagttaatttactatgttctatggaggagcttagttttagttttaagcattggtagtaagaatgttggtttgtgttggatatatgtgagttatattgaatgttctctttcaagctgacgtttttaagaggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="82496" stop="80391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82196" g_stop="82141" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82140" i_stop="81013" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81012" g_stop="80692" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="378" r_length="322" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="393"/>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E303524" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82196" e_stop="82141"/>
          <exon e_start="81012" e_stop="80692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGA-CAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGG</genome_strand>
        <mrna_strand>GAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACCAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283667" ref_strand="+" ref_description="SGN-E283667 [cLES-1-D16]">
      <seq>agagagtcggcggtgaattttgagcaagcatgagagcaaagtggaagaagaagcgtatgaggagactgaaaaggaagcgcagaaagatgagacagagatctaagtatagcagcagcaagggtccagatgcctactgtgggttcttggctgaaactgctgctttctataatcgctgtccatctctgtggcagctccaaagaatggaggttgtccgttgtttgaagctgtgcattagataatttactatgttctatggaggagcttagacttagctttaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="-" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="82481" stop="80473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82181" g_stop="82141" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82140" i_stop="81013" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81012" g_stop="80773" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="281" r_length="240" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="-" ref_id="SGN-E283667" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82181" e_stop="82141"/>
          <exon e_start="81012" e_stop="80773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAGGTCTGTTTTCTGATCCTAAGTGCATTTCGTGTTATCTTTTTCGGTTTTGTAAGCTCGAAATTGAAAGTTCTGTTGCTACTCAGTTATGTTTTTGCTTAAACTTCATATTTGCAATTGTTATTGTGTTTGCTATGATGGATTAAAGGATCTATTGACTATTGTTTTTGTTGAATTTGTTCTTACACATCGTATTTTCAGTTGCATTATCTGATTACTTGAGGATAACTAGTGTGTCATGCTTGGAGATTTATGACACATGATTCATGGTGATCGTAATTGTTGGAGATGATTTGTAGACTTTGAGAAACTATAAACCATATAAGGTAGAATGGAAGCTCACAAGAGGATATATTGTTTAAGATCCTCGTATAGGAATGCTTGAAGTGGGAGGTTTACATACTTTGATATGTACCACACTTGCTCAAATACTCCTTTACAATTTTAATCTACAACAATAGTGATTATAGGGAGTAGGGATACAAGTTAGCTATCAAACATCACCTAAGCTATTTGGGCAATTTGTCGAACACAGTACGAGTCCAAGGTCAATTACGATGGTATATTCCCACAATCTGAGAATAGTAGCTATGGTGCTTTGGTTCAAATTGTGTTTGGGGTGTGAAATTTATTTTGCCCCAGCGGACCCATTTTCTAAACTTGCATAGTTTTCTTGATCTTAACCAAAAAGGTTGGGTAAGGTGTTATCTTATGCATTGAATTTTATATTAATATGCACAGTTGCTTTACAAGTGTACTTGTTTTTACCTTATCAAACACCTATCAATAAAATATTCTAGTATTTGTTTGAAGTTGGACCGTGCTGGGTCTTTCGAGATCTAGTGTTGGGGTAGAAATCTTCTGAAATCTTGTGTCTTCCCTGTCTTCCATGGAATATATCTTTTCCATATGAATGTTCTGAAAAGTGTGGCCTTTAAGATTTAGAGGAAAGATAAGACAACGTGATATGTTTTTTAGCTTCTTTAGATGACAACAAAGTGTTTGTGTCAAAACTCAGTTGGCACTGCAGTATGCCATCAACCTGTTTTGCGAACAGGGAGTTTGCTAAGGTTTTGTTTTCTTGTGCCATTGTAGTGGTACTAGCGACTAATGTTTTTATTTTAAATGCAGTGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCA</genome_strand>
        <mrna_strand>AGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTATAGCAGCAGCAAGGGTCCAGATGCCTACTGTGGGTTCTTGGCTGAAACTGCTGCTTTCTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGATAATTTACTATGTTCTATGGAGGAGCTTAGACTTAGCTTTAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276867" ref_strand="+" ref_description="SGN-E276867 [cLEN-14-L1]">
      <seq>tgacgagtaccgggaaatacaatgtcgaacgaagccccagcaaaaccaccgtgcgacacaccggagcatgactcagccggcgtcaacggctttgacatcaacaacgacacttcaagtactgccttagcaaagggcctttccactataatatcttctctaatccgggaatttgatgatagtgctgccgccacctctcgtagtcaagatcaactctcttccaccctcgatcgtctcactggagagcttgacaagctgctggaagatgccccattgccttttatcatgcagcatgctgccagaatttctggtgttaggaaaagaattacatcgttgaactcacttttgaagtctatacagaggcgtcttgataatatcgaccacacattatctgctggtttgttacatgagaagtcctcaggggatggtgggcgagaccatgagaatcataagtcttcattgaagagttcatgatcaaaatccaggagaagattcaaatgtccttcgcagtgcccgtagaaatctccttctgattgcaagcatttggaactgattcagccttgtggtgtaaaaggtagtctgatgcatgaggttataacacactgcgttctgaaaagatgttcttttacctgtcaaaaaattgcatggtttcagctctgtgccatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="83774" stop="87585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84074" g_stop="84314" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84315" i_stop="85612" i_length="1298">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85613" g_stop="85777" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="406" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85778" i_stop="86064" i_length="287">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86065" g_stop="86122" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="464" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86123" i_stop="87084" i_length="962">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87085" g_stop="87285" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="665" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E276867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84074" e_stop="84314"/>
          <exon e_start="85613" e_stop="85777"/>
          <exon e_start="86065" e_stop="86122"/>
          <exon e_start="87085" e_stop="87285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAGGTAGAACTCATCACCTTCTTCTAATTGTATTCAATGGACTTAATTTCGACATTTATTTTTGATGCTCTGTTTAATTGGATTTAGGGATCCATTTACTGTTTTACATTTCATTTTTGTTACCAATTGTTATTGAATAGTTTAAAGTGGGAAGCTTTGACAAGAGGGGCTTGTTCGGATGATAAGCACCCTCCACCTTTAATCCTAGAGTTGTGGGTTCAGTTACCAGTGGAGCAAAACGGGTGGGAGCTCCAGGGGATGGATTATAAAAATAAAAAGTAGGAAGATTTGCAAAAAGAATTGTTCTATTGACGGCACATCTTAGAAAGAGTCCAAATAATCTTTACTAAGATGGTTGTTCCAACTGAATAGCTGAATGGTTGAGTCACAGGAGTAACAATCCAGCTGCAATATGATGTGCAGGCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTTCTTTTTTGCTGTTGCTATATGATATATTATAAGTTCTCATTGAACCATAAAGCTAAAGGAGAAAAAAAAAAGAAATACACACTGCTCTCGTAGATATTAACAGAAGGCTAATAACATTGTTGGCTGTACAAAGGTCAATCTTTATTCCATACATTTTGAAAAGTCAAATTAACTTAGTGGGCTATATTTCAGCGTGTGAAAAAAAAGAGAGTTTAAGATATCTTGAAATAATATTAACTTGCCACTTTTTTAAAAATAGATATCTTGAAATAACTTTTTGGCTCCTTCCTCTCCCTTTGGTATGTACAGTGAGACTTTTGTGTTCTCTATGTAAAGTAGAGATGTCGTCCGTGCTCCTTTATGCCTGATTATTAGTGGCGACAATTGCATTGGAAAAAGGATGTAAAACTGTATTTCCTTAAGTTTTGTTACTACATGTCGATTGCATCAGACCAATCTAATTGCCATGGGCTAACTAACTATTACATGCTCTACAGATGCAAGAGAAATCACCGTTCTACATAATATCTAAAAGTATTAAAAAGGATATTAGGAATAAAGATCCAGGTTGCTAAGTCTGGTGTTTAATCGAAGATTCTGCTTTTATGTGATTAATTTTCTTGTTCTTTCTTGGTCCTGCTTCTACCTGCAGAGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATGGTACACTTATTTTTTTCTTGATACATCTTATGTCAAGTTTTTCATGGAAATTCAATTAGGATGTGTGCAGGTTCTTAATACTTTGTACTCCGCTATGAATGCTTTACTTGTGTAATCTTTCAAATAGTTCTGTACATGAATTTGGTATTATGTCCAAGCTGTAGGACATAAAAGTTCAATGGAACAGTAATTCCATAATATATCTTGGAAATTAATTTTTCCACGGGGTATATAGCGTTTTGAAGGAAGCTTATATCCACTAATGCTTTTGTTGTATCTTTTTGCAGAGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAGGTAATGCTGTTTCTGGTGTTCGATGAACATATAATTTTCTCACCTGGGATTTACGTGAGTGAGAACATTTACGAGCTGTAGGAGTTTGATTTGTGATATATTTCCTAGTCTCTTGATGCAAAAAGGTAATCGAGGTTCATCGGGTCATATCTACTTATCCCTTAAACATTTGTTAGGATCTAGAACACGAAATTCTAGTGCATTAGTTGATTTTTCTATGAACCTCTTACTTTTTAAAAACAGTTTTCCTCCCCAAGAGGACATCAGAATCTAGTATGATAGACAGACATAGCTGAGCGTCAATAAGCCAGTGATCCACACAGTCTCCGCTTATTTGTACAGTTATGGAAGCAGGAGGAACAGGTTACTTCCACTGTTTGGTGGAGAAAGTTACTGGTAAATCTTGACCTCCCATTCTGAGATGCCTATCTCACTCGATAAAGAAAAAAGAAAAAACACTCCATTCTTATCTTCAGAGCAGTAATTCTAAGTAAATGTCTCAGTAGTTTTGGCCAAGTTGGGAAGTTTAACATGTAAAACAAGACAACGAGGGTCCAAAATAGGAGGCATATCATGCATAATAAGTGATACCCACACCTGGAAGAGATTACAGGTAGAGCCTGCTAACATAAACTTTTTCCAGACATATTTGGAATCAATGATATCTTCTGAGTTCTTACTATCTAACCTTTCCCAGTGTGTGTCAAATGAATTAATTCAGTGTAATCATTTTGTCTTGTGTTTCAATATCTTGGTGCTGCAATTGGATTGCTGAGAAAATCATTTGTAATTTGGAGCATTATTGAAGTGTGTAATATTACTGAAGCATGCAACATGTGATAATCTTTAGATGAGCTAAATCTTTTCGAGGTGTTGCCTTCATAATGTCTAAAAGGAAGTGTATGAGTTTTATGTCATTGACTAGCCTCTAAATCAGTTACTATGTGGTTGTTTTGGGGCAGTTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</genome_strand>
        <mrna_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATG...............................................................................................................................................................................................................................................................................................AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274726" ref_strand="+" ref_description="SGN-E274726 [cLEN-13-L1]">
      <seq>tgacgagtaccgggaaatacaatgtcgaacgaagccccagcaaaaccaccgtgcgacacaccggagcatgactcagccggcgtcaacggctttgacatcaacaacgacacttcaagtactgccttagcaaagggcctttccactataatatcttctctaatccgggaatttgatgatagtgctgccgccacctctcgtagtcaagatcaactctcttccaccctcgatcgtctcactggagagcttgacaagctgctggaagatgccccattgccttttatcatgcagcatgctgccagaatttctggtgttaggaaaagaattacatcgttgaactcacttttgaagtctatacagaggcgtcttgataatatcgaccacacattatctgctggtttgttacatgagaagtcctcaggggatggtgggcgagaccatgagaatcataagtcttcattgaagagttcatgatcaaaatccaggagaagattcaaatgtccttcgcagtgcccgtagaaatctccttctgattgcaagcatttggaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="83774" stop="87469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84074" g_stop="84314" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84315" i_stop="85612" i_length="1298">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85613" g_stop="85777" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="406" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85778" i_stop="86064" i_length="287">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86065" g_stop="86122" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="464" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86123" i_stop="87084" i_length="962">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87085" g_stop="87169" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="549" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E274726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84074" e_stop="84314"/>
          <exon e_start="85613" e_stop="85777"/>
          <exon e_start="86065" e_stop="86122"/>
          <exon e_start="87085" e_stop="87169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAGGTAGAACTCATCACCTTCTTCTAATTGTATTCAATGGACTTAATTTCGACATTTATTTTTGATGCTCTGTTTAATTGGATTTAGGGATCCATTTACTGTTTTACATTTCATTTTTGTTACCAATTGTTATTGAATAGTTTAAAGTGGGAAGCTTTGACAAGAGGGGCTTGTTCGGATGATAAGCACCCTCCACCTTTAATCCTAGAGTTGTGGGTTCAGTTACCAGTGGAGCAAAACGGGTGGGAGCTCCAGGGGATGGATTATAAAAATAAAAAGTAGGAAGATTTGCAAAAAGAATTGTTCTATTGACGGCACATCTTAGAAAGAGTCCAAATAATCTTTACTAAGATGGTTGTTCCAACTGAATAGCTGAATGGTTGAGTCACAGGAGTAACAATCCAGCTGCAATATGATGTGCAGGCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTTCTTTTTTGCTGTTGCTATATGATATATTATAAGTTCTCATTGAACCATAAAGCTAAAGGAGAAAAAAAAAAGAAATACACACTGCTCTCGTAGATATTAACAGAAGGCTAATAACATTGTTGGCTGTACAAAGGTCAATCTTTATTCCATACATTTTGAAAAGTCAAATTAACTTAGTGGGCTATATTTCAGCGTGTGAAAAAAAAGAGAGTTTAAGATATCTTGAAATAATATTAACTTGCCACTTTTTTAAAAATAGATATCTTGAAATAACTTTTTGGCTCCTTCCTCTCCCTTTGGTATGTACAGTGAGACTTTTGTGTTCTCTATGTAAAGTAGAGATGTCGTCCGTGCTCCTTTATGCCTGATTATTAGTGGCGACAATTGCATTGGAAAAAGGATGTAAAACTGTATTTCCTTAAGTTTTGTTACTACATGTCGATTGCATCAGACCAATCTAATTGCCATGGGCTAACTAACTATTACATGCTCTACAGATGCAAGAGAAATCACCGTTCTACATAATATCTAAAAGTATTAAAAAGGATATTAGGAATAAAGATCCAGGTTGCTAAGTCTGGTGTTTAATCGAAGATTCTGCTTTTATGTGATTAATTTTCTTGTTCTTTCTTGGTCCTGCTTCTACCTGCAGAGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATGGTACACTTATTTTTTTCTTGATACATCTTATGTCAAGTTTTTCATGGAAATTCAATTAGGATGTGTGCAGGTTCTTAATACTTTGTACTCCGCTATGAATGCTTTACTTGTGTAATCTTTCAAATAGTTCTGTACATGAATTTGGTATTATGTCCAAGCTGTAGGACATAAAAGTTCAATGGAACAGTAATTCCATAATATATCTTGGAAATTAATTTTTCCACGGGGTATATAGCGTTTTGAAGGAAGCTTATATCCACTAATGCTTTTGTTGTATCTTTTTGCAGAGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAGGTAATGCTGTTTCTGGTGTTCGATGAACATATAATTTTCTCACCTGGGATTTACGTGAGTGAGAACATTTACGAGCTGTAGGAGTTTGATTTGTGATATATTTCCTAGTCTCTTGATGCAAAAAGGTAATCGAGGTTCATCGGGTCATATCTACTTATCCCTTAAACATTTGTTAGGATCTAGAACACGAAATTCTAGTGCATTAGTTGATTTTTCTATGAACCTCTTACTTTTTAAAAACAGTTTTCCTCCCCAAGAGGACATCAGAATCTAGTATGATAGACAGACATAGCTGAGCGTCAATAAGCCAGTGATCCACACAGTCTCCGCTTATTTGTACAGTTATGGAAGCAGGAGGAACAGGTTACTTCCACTGTTTGGTGGAGAAAGTTACTGGTAAATCTTGACCTCCCATTCTGAGATGCCTATCTCACTCGATAAAGAAAAAAGAAAAAACACTCCATTCTTATCTTCAGAGCAGTAATTCTAAGTAAATGTCTCAGTAGTTTTGGCCAAGTTGGGAAGTTTAACATGTAAAACAAGACAACGAGGGTCCAAAATAGGAGGCATATCATGCATAATAAGTGATACCCACACCTGGAAGAGATTACAGGTAGAGCCTGCTAACATAAACTTTTTCCAGACATATTTGGAATCAATGATATCTTCTGAGTTCTTACTATCTAACCTTTCCCAGTGTGTGTCAAATGAATTAATTCAGTGTAATCATTTTGTCTTGTGTTTCAATATCTTGGTGCTGCAATTGGATTGCTGAGAAAATCATTTGTAATTTGGAGCATTATTGAAGTGTGTAATATTACTGAAGCATGCAACATGTGATAATCTTTAGATGAGCTAAATCTTTTCGAGGTGTTGCCTTCATAATGTCTAAAAGGAAGTGTATGAGTTTTATGTCATTGACTAGCCTCTAAATCAGTTACTATGTGGTTGTTTTGGGGCAGTTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTG</genome_strand>
        <mrna_strand>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATG...............................................................................................................................................................................................................................................................................................AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716656" ref_strand="+" ref_description="SGN-E716656 [FB17CG01]">
      <seq>ggtaatacaatgtcgaacgaagccccagcaaaaccaccgtgcgacacaccggagcatgactcagccggcgtcaacggctttgacatcaacaacgacacttcaagtactgccttagcaaagggcctttccactataatatcttctctaatccgggaatttgatgatagtgctgccgccacctctcgtagtcaagatcaactctcttccaccctcgatcgtctcactggaggcttacccaaacagatgtggttgcaatgtatcaagttgttcaatggattggtcgagatgagcataagatgccgtcacaccattgtcatgttagagaaatcaccagggttggggcgtgtgtgtgtgctgggaggcaatagctgtatatgtaattttgtttgcaccttctagtttcatttgcagctcaccattgtttccttgagaatgaatacaatcactttcttcttcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="83786" stop="85263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84086" g_stop="84314" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84315" i_stop="84734" i_length="420">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.437" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84735" g_stop="84960" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="455" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84961" i_stop="85012" i_length="52">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.484" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85013" g_stop="85033" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="476" r_length="21" r_score="0.762"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E716656" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84086" e_stop="84314"/>
          <exon e_start="84735" e_stop="84960"/>
          <exon e_start="85013" e_stop="85033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAGGTAGAACTCATCACCTTCTTCTAATTGTATTCAATGGACTTAATTTCGACATTTATTTTTGATGCTCTGTTTAATTGGATTTAGGGATCCATTTACTGTTTTACATTTCATTTTTGTTACCAATTGTTATTGAATAGTTTAAAGTGGGAAGCTTTGACAAGAGGGGCTTGTTCGGATGATAAGCACCCTCCACCTTTAATCCTAGAGTTGTGGGTTCAGTTACCAGTGGAGCAAAACGGGTGGGAGCTCCAGGGGATGGATTATAAAAATAAAAAGTAGGAAGATTTGCAAAAAGAATTGTTCTATTGACGGCACATCTTAGAAAGAGTCCAAATAATCTTTACTAAGATGGTTGTTCCAACTGAATAGCTGAATGGTTGAGTCACAGGAGTAACAATCCAGCTGCAATATGATGTGCAGGCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTTCTTTTTTGCTGTTGCTATATGATATATTATAAGTTCTCATTGAACCATAAAGCTAAAGGAGAAAAAAAAAAGA</genome_strand>
        <mrna_strand>GGTAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTT....................................................CTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274732" ref_strand="+" ref_description="SGN-E274732 [cLEN-13-N1]">
      <seq>cttcaagtactgccttagctgagggcctttccactataatatcttctctaatccgggaatttgatgatagtgctgccgccacctctcgtagtcaagatcaactgtcttacaccctggataggctcactggagagcttgacaagctgctggaagatgccccattgccttttatgatgcagcatgctgccagaatttctggtgttaggaaaagaattacatcgttgaactcacttttgaagtctatacagaggcgtcttgataatatcgaccacacattatctgctggattgatacatgagaagtcctcaggggatggtgggcgagaccatgagaatcataagtcttcattgaagagttcatgatcaaaatccaggagaagattcaaatgtccttcgcagtgcccgtagaaatctccttctgattgcaagcatttggaactgattcagccttgtggtgtaaaaggtagtctgatgcatgaggttataacacactgcgttctgaaaagatgttcttttacctgtcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="83883" stop="87556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84183" g_stop="84314" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84315" i_stop="85612" i_length="1298">
            <donor d_prob="0.992" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85613" g_stop="85777" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="297" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85778" i_stop="86064" i_length="287">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86065" g_stop="86122" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="355" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86123" i_stop="87084" i_length="962">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87085" g_stop="87256" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="527" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E274732" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84183" e_stop="84314"/>
          <exon e_start="85613" e_stop="85777"/>
          <exon e_start="86065" e_stop="86122"/>
          <exon e_start="87085" e_stop="87256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAGGTAGAACTCATCACCTTCTTCTAATTGTATTCAATGGACTTAATTTCGACATTTATTTTTGATGCTCTGTTTAATTGGATTTAGGGATCCATTTACTGTTTTACATTTCATTTTTGTTACCAATTGTTATTGAATAGTTTAAAGTGGGAAGCTTTGACAAGAGGGGCTTGTTCGGATGATAAGCACCCTCCACCTTTAATCCTAGAGTTGTGGGTTCAGTTACCAGTGGAGCAAAACGGGTGGGAGCTCCAGGGGATGGATTATAAAAATAAAAAGTAGGAAGATTTGCAAAAAGAATTGTTCTATTGACGGCACATCTTAGAAAGAGTCCAAATAATCTTTACTAAGATGGTTGTTCCAACTGAATAGCTGAATGGTTGAGTCACAGGAGTAACAATCCAGCTGCAATATGATGTGCAGGCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTTCTTTTTTGCTGTTGCTATATGATATATTATAAGTTCTCATTGAACCATAAAGCTAAAGGAGAAAAAAAAAAGAAATACACACTGCTCTCGTAGATATTAACAGAAGGCTAATAACATTGTTGGCTGTACAAAGGTCAATCTTTATTCCATACATTTTGAAAAGTCAAATTAACTTAGTGGGCTATATTTCAGCGTGTGAAAAAAAAGAGAGTTTAAGATATCTTGAAATAATATTAACTTGCCACTTTTTTAAAAATAGATATCTTGAAATAACTTTTTGGCTCCTTCCTCTCCCTTTGGTATGTACAGTGAGACTTTTGTGTTCTCTATGTAAAGTAGAGATGTCGTCCGTGCTCCTTTATGCCTGATTATTAGTGGCGACAATTGCATTGGAAAAAGGATGTAAAACTGTATTTCCTTAAGTTTTGTTACTACATGTCGATTGCATCAGACCAATCTAATTGCCATGGGCTAACTAACTATTACATGCTCTACAGATGCAAGAGAAATCACCGTTCTACATAATATCTAAAAGTATTAAAAAGGATATTAGGAATAAAGATCCAGGTTGCTAAGTCTGGTGTTTAATCGAAGATTCTGCTTTTATGTGATTAATTTTCTTGTTCTTTCTTGGTCCTGCTTCTACCTGCAGAGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATGGTACACTTATTTTTTTCTTGATACATCTTATGTCAAGTTTTTCATGGAAATTCAATTAGGATGTGTGCAGGTTCTTAATACTTTGTACTCCGCTATGAATGCTTTACTTGTGTAATCTTTCAAATAGTTCTGTACATGAATTTGGTATTATGTCCAAGCTGTAGGACATAAAAGTTCAATGGAACAGTAATTCCATAATATATCTTGGAAATTAATTTTTCCACGGGGTATATAGCGTTTTGAAGGAAGCTTATATCCACTAATGCTTTTGTTGTATCTTTTTGCAGAGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAGGTAATGCTGTTTCTGGTGTTCGATGAACATATAATTTTCTCACCTGGGATTTACGTGAGTGAGAACATTTACGAGCTGTAGGAGTTTGATTTGTGATATATTTCCTAGTCTCTTGATGCAAAAAGGTAATCGAGGTTCATCGGGTCATATCTACTTATCCCTTAAACATTTGTTAGGATCTAGAACACGAAATTCTAGTGCATTAGTTGATTTTTCTATGAACCTCTTACTTTTTAAAAACAGTTTTCCTCCCCAAGAGGACATCAGAATCTAGTATGATAGACAGACATAGCTGAGCGTCAATAAGCCAGTGATCCACACAGTCTCCGCTTATTTGTACAGTTATGGAAGCAGGAGGAACAGGTTACTTCCACTGTTTGGTGGAGAAAGTTACTGGTAAATCTTGACCTCCCATTCTGAGATGCCTATCTCACTCGATAAAGAAAAAAGAAAAAACACTCCATTCTTATCTTCAGAGCAGTAATTCTAAGTAAATGTCTCAGTAGTTTTGGCCAAGTTGGGAAGTTTAACATGTAAAACAAGACAACGAGGGTCCAAAATAGGAGGCATATCATGCATAATAAGTGATACCCACACCTGGAAGAGATTACAGGTAGAGCCTGCTAACATAAACTTTTTCCAGACATATTTGGAATCAATGATATCTTCTGAGTTCTTACTATCTAACCTTTCCCAGTGTGTGTCAAATGAATTAATTCAGTGTAATCATTTTGTCTTGTGTTTCAATATCTTGGTGCTGCAATTGGATTGCTGAGAAAATCATTTGTAATTTGGAGCATTATTGAAGTGTGTAATATTACTGAAGCATGCAACATGTGATAATCTTTAGATGAGCTAAATCTTTTCGAGGTGTTGCCTTCATAATGTCTAAAAGGAAGTGTATGAGTTTTATGTCATTGACTAGCCTCTAAATCAGTTACTATGTGGTTGTTTTGGGGCAGTTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAA</genome_strand>
        <mrna_strand>CTTCAAGTACTGCCTTAGCTGAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTGTCTTACACCCTGGATAGGCTCACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATGATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGATTGATACATG...............................................................................................................................................................................................................................................................................................AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268758" ref_strand="+" ref_description="SGN-E268758 [cLEM-16-P13]">
      <seq>ctctttctttttatatatatatatattccattctgtaatcgttacgttaacgtttcttctatttgtatgtacgccggaaattatggcttcagcttgcgttaacaaaatgggtatgtcgccggagaagtttttggattgttctccggctgcgaagtacaagtcatatggttggttaagtccaaggatgtcatttagtaaggacggcgaagcttccaaagttgccggagctaagcagacgagtgttgaaaatgataaagtggaggaattagatccagaagtttcgaaagatatgggcgattttgagttttgccttgaagatccggttaatatgctgccagctgatgagctttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0077G20-5HVPH/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0077G20.1" temp_strand="+" temp_description="C07SLm0077G20.1  htgs_phase:2 submitted_to_sgn_as:C07MBa0077G20, upload_account_name:france complete sequence">
        <position start="91330" stop="91949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91630" g_stop="91949" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0077G20.1" gen_strand="+" ref_id="SGN-E268758" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0077G20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91630" e_stop="91949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAGGGACGGCGAAGCTTCCAAGGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAGGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATC</genome_strand>
        <mrna_strand>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAAGGACGGCGAAGCTTCCAAAGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAAGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>179</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8296" PGL_stop="20846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8296" e_stop="8471"/>
            <exon e_start="8549" e_stop="8647"/>
            <exon e_start="8759" e_stop="8817"/>
            <exon e_start="9046" e_stop="9206"/>
            <exon e_start="10090" e_stop="10241"/>
            <exon e_start="10531" e_stop="10657"/>
            <exon e_start="11187" e_stop="11289"/>
            <exon e_start="11413" e_stop="11458"/>
            <exon e_start="11735" e_stop="11773"/>
            <exon e_start="11853" e_stop="12009"/>
            <exon e_start="12712" e_stop="12799"/>
            <exon e_start="13138" e_stop="13254"/>
            <exon e_start="14134" e_stop="14211"/>
            <exon e_start="14301" e_stop="14402"/>
            <exon e_start="15152" e_stop="15242"/>
            <exon e_start="15413" e_stop="15517"/>
            <exon e_start="15717" e_stop="15781"/>
            <exon e_start="16689" e_stop="16840"/>
            <exon e_start="18477" e_stop="18709"/>
            <exon e_start="19237" e_stop="19373"/>
            <exon e_start="19533" e_stop="19643"/>
            <exon e_start="19737" e_stop="20442"/>
            <exon e_start="20807" e_stop="20846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="0.983"/>
          <exon-intron don_prob="0.990" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.490" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.817" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.766" e_score="1.000"/>
          <exon-intron don_prob="0.654" acc_prob="0.744" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.480" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.201" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.999"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="8296" e_stop="8471" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="8472" i_stop="8548" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8549" e_stop="8647" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.895">
            <gDNA_intron_boundary i_start="8648" i_stop="8758" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8759" e_stop="8817" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.797">
            <gDNA_intron_boundary i_start="8818" i_stop="9045" i_length="228"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9046" e_stop="9206" e_length="161"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.490">
            <gDNA_intron_boundary i_start="9207" i_stop="10089" i_length="883"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10090" e_stop="10241" e_length="152"/>
          </exon>
          <intron i_serial="5" don_prob="0.934" acc_prob="0.979">
            <gDNA_intron_boundary i_start="10242" i_stop="10530" i_length="289"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="10531" e_stop="10657" e_length="127"/>
          </exon>
          <intron i_serial="6" don_prob="0.952" acc_prob="0.959">
            <gDNA_intron_boundary i_start="10658" i_stop="11186" i_length="529"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="11187" e_stop="11289" e_length="103"/>
          </exon>
          <intron i_serial="7" don_prob="0.817" acc_prob="0.967">
            <gDNA_intron_boundary i_start="11290" i_stop="11412" i_length="123"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="11413" e_stop="11458" e_length="46"/>
          </exon>
          <intron i_serial="8" don_prob="0.986" acc_prob="0.989">
            <gDNA_intron_boundary i_start="11459" i_stop="11734" i_length="276"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="11735" e_stop="11773" e_length="39"/>
          </exon>
          <intron i_serial="9" don_prob="0.901" acc_prob="0.990">
            <gDNA_intron_boundary i_start="11774" i_stop="11852" i_length="79"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="11853" e_stop="12009" e_length="157"/>
          </exon>
          <intron i_serial="10" don_prob="0.960" acc_prob="0.903">
            <gDNA_intron_boundary i_start="12010" i_stop="12711" i_length="702"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="12712" e_stop="12799" e_length="88"/>
          </exon>
          <intron i_serial="11" don_prob="0.959" acc_prob="0.938">
            <gDNA_intron_boundary i_start="12800" i_stop="13137" i_length="338"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="13138" e_stop="13254" e_length="117"/>
          </exon>
          <intron i_serial="12" don_prob="0.975" acc_prob="0.768">
            <gDNA_intron_boundary i_start="13255" i_stop="14133" i_length="879"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="14134" e_stop="14211" e_length="78"/>
          </exon>
          <intron i_serial="13" don_prob="0.992" acc_prob="0.766">
            <gDNA_intron_boundary i_start="14212" i_stop="14300" i_length="89"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="14301" e_stop="14402" e_length="102"/>
          </exon>
          <intron i_serial="14" don_prob="0.654" acc_prob="0.744">
            <gDNA_intron_boundary i_start="14403" i_stop="15151" i_length="749"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="15152" e_stop="15242" e_length="91"/>
          </exon>
          <intron i_serial="15" don_prob="0.966" acc_prob="0.934">
            <gDNA_intron_boundary i_start="15243" i_stop="15412" i_length="170"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="15413" e_stop="15517" e_length="105"/>
          </exon>
          <intron i_serial="16" don_prob="0.480" acc_prob="0.941">
            <gDNA_intron_boundary i_start="15518" i_stop="15716" i_length="199"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="15717" e_stop="15781" e_length="65"/>
          </exon>
          <intron i_serial="17" don_prob="0.989" acc_prob="0.874">
            <gDNA_intron_boundary i_start="15782" i_stop="16688" i_length="907"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="16689" e_stop="16840" e_length="152"/>
          </exon>
          <intron i_serial="18" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="16841" i_stop="18476" i_length="1636"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="18477" e_stop="18709" e_length="233"/>
          </exon>
          <intron i_serial="19" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18710" i_stop="19236" i_length="527"/>
          </intron>
          <exon e_serial="20" e_score="1.000">
            <gDNA_exon_boundary e_start="19237" e_stop="19373" e_length="137"/>
          </exon>
          <intron i_serial="20" don_prob="0.967" acc_prob="0.891">
            <gDNA_intron_boundary i_start="19374" i_stop="19532" i_length="159"/>
          </intron>
          <exon e_serial="21" e_score="1.000">
            <gDNA_exon_boundary e_start="19533" e_stop="19643" e_length="111"/>
          </exon>
          <intron i_serial="21" don_prob="0.201" acc_prob="0.895">
            <gDNA_intron_boundary i_start="19644" i_stop="19736" i_length="93"/>
          </intron>
          <exon e_serial="22" e_score="0.999">
            <gDNA_exon_boundary e_start="19737" e_stop="20442" e_length="706"/>
          </exon>
          <intron i_serial="22" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20443" i_stop="20806" i_length="364"/>
          </intron>
          <exon e_serial="23" e_score="0.600">
            <gDNA_exon_boundary e_start="20807" e_stop="20846" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8296" stop="8471"/>
              <exon start="8549" stop="8647"/>
              <exon start="8759" stop="8817"/>
              <exon start="9046" stop="9189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8354" stop="8471"/>
              <exon start="8549" stop="8647"/>
              <exon start="8759" stop="8817"/>
              <exon start="9046" stop="9206"/>
              <exon start="10090" stop="10241"/>
              <exon start="10531" stop="10657"/>
              <exon start="11187" stop="11289"/>
              <exon start="11413" stop="11458"/>
              <exon start="11735" stop="11773"/>
              <exon start="11853" stop="12009"/>
              <exon start="12712" stop="12799"/>
              <exon start="13138" stop="13254"/>
              <exon start="14134" stop="14211"/>
              <exon start="14301" stop="14402"/>
              <exon start="15152" stop="15242"/>
              <exon start="15413" stop="15517"/>
              <exon start="15717" stop="15781"/>
              <exon start="16689" stop="16840"/>
              <exon start="18477" stop="18709"/>
              <exon start="19237" stop="19373"/>
              <exon start="19533" stop="19643"/>
              <exon start="19737" stop="20442"/>
              <exon start="20807" stop="20846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14327" stop="14402"/>
              <exon start="15152" stop="15242"/>
              <exon start="15413" stop="15517"/>
              <exon start="15717" stop="15781"/>
              <exon start="16689" stop="16840"/>
              <exon start="18477" stop="18621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15414" stop="15517"/>
              <exon start="15717" stop="15781"/>
              <exon start="16689" stop="16840"/>
              <exon start="18477" stop="18709"/>
              <exon start="19237" stop="19373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19609" stop="19643"/>
              <exon start="19737" stop="20363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354772" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTCATTTGAGTTTGTTCCGGGCTTGAGTAAGAAATTCCAATCGCAACCGCTGCAAAATGAACATCGAATCGGAGAAAGAGCAATTTCTGAAGGAATTTGGAAGCTATTATGGTTATGCCAATTCCCCCAAAAACATTGATGAAATTAGAGCTACTGAATTTAAGCGCTTAAACG : ATACGGTATACTTGGATCATGCTGGGGCGACTCTCTATTCCGAGTCTCAAATGGAAGCTGTGTTTAAGGACCTCAATTCTACTCTTTATGGAAATCCTC : ATAGCCAGAGCACTTGTAGTTTGGCTACCGAGGACATTGTTGGGAAAGCACGCCAACAG : GTCCTTAGTTTCTTCAATGCATCACCAAGAGAATATAGCTGTATATTCACTTCTGGGGCAACAGCTGCACTAAAGCTTGTCGGTGAGACATTCCCATGGAGCAGTAACAGCAGTTTTATGTACTCAATGGAGAATCATAACAGCGTCCTTGGGATTAGGGA : ATATGCTCTCAGTAAAGGAGCTGCTGCTTTTGCAGTTGACATTGAAGATACACATGTTGGTGAATCAGAAAGCCCACAGTCTAACTTAAAACTAACACAGCACCACATTCAGAGAAGAAATGAAGGTGGCGTTCTGAAAGAAGGGATGACAG : GTAACACATACAACTTGTTTGCATTCCCATCAGAATGCAATTTTTCAGGTCGAAAATTCGACCCTAACCTGATTAAGATTATCAAAGAAGGGTCTGAAAGAATCTTAGAAAGCTCCCAGTATTCCAG : AGGTTGCTGGTTAGTTCTGATAGATGCTGCTAAAGGATGTGCTACCAATCCACCAAATTTATCAATGTTTAAAGCAGACTTTGTTGTGTTCTCATTCTACAAG : TTATTTGGCTATCCAACTGGCCTTGGAGCACTCATTGTTCGAAAGG : ATGCTGCTAAGCTGATGAAGAAGACCTACTTTAGTGGAG : GCACGGTGACTGCAGCTATTGCTGACGTTGACTTTTTCAAAAGAAGAGAAGGTGTAGAGGAATTTTTTGAGGATGGAACCATTTCATTCTTGAGCATAACAGCAATTCAACATGGGTTCAAAATAATTAATATGCTAACGACATCTTCGATTTTCCG : GCATACAACATCAATTGCAGCATATGTGAGGAATAAGCTTTTGGCACTGAAGCATGAAAATGGAGAATTTGTTTGCACGCTGTACGGG : TTATTATCTAGTGAGATGGGCCCCACAGTTTCATTCAACATGAAAAGACCAGATGGAACATGGTATGGATACCGTGAGGTGGAAAAATTGGCAACCTTGGCAGGAATTCAACTGCGG : ACAGGATGTTTTTGCAATCCTGGTGCTTGTGCTAAATATCTTGGTTTGTCACACTTGGATCTTCTTTCAAATATTGAG : GCTGGGCATGTGTGCTGGGATGATCGTGACATTTTACATGGAAAACCAACTGGAGCAGTCAGAGTATCTTTTGGTTACATGTCAACATTCGAAGATGCCATG : AAATTCGTCAACTTCGTGGAAAGTAATTTTGTGATATCATCTTTTAATCGGTGTGCATTGCAGCCAAGGTCCATCTCTCTGCCAATTGAAG : GGATTGCAGAAGCTGCTGCACGGCATTTCCTCACATCTATTACTGTCTATCCAATAAAGTCTTGTGCGGGATTTAGTGTGGATCAGTGGCCTCTAACATCTACTG : GGTTATTGCATGATCGTGAATGGATTCTCAAGAGCACAACCGGTGAAATTCTTACCCAAAAGAAG : GTTCCAGAAATGTGCTATATCTCCACGCTGATTGATCTCAATTTGGGGAAACTGTTTGTAGAGTCACCTCGTTGCAAGGAGAAATTGCAGATTGAACTCAAATCCAGCTCACTGGTCACTGAAAGAGATGAAATGGATATCCAAAATCATAG : ATATGAAGTCACAAGTTACAACAATGAGGTTGATATCTGGTTCAGCAGGGCGATTGATCGACCTTGCACTCTACTAAGAAATTCCGATTCCCAGAGTCACTCCTGCATAAATAAGAACGGGAGTCCTGGCATGTGCAGGGATGTTGGTGCTAGATTGAATTTTGTTAATGAAGCCCAATTTCTGCTGATATCTGAAGAAAGCATAAAGGACCTCAACTCTAGGCTGAAATCTA : ATGGACGAAGGAGAAATGGTGGACAAGCAGTACAAGTTGGTGTAATGAGATTTCGACCCAATCTTGTAGCATCTAGTGGTGAACCATATGCAGAAGATGGATGGAGCAATATAAATATTGGAGGCAAATATTTTATG : TCATTGGGTGGTTGCAATCGTTGCCAGATGATCAATATAAATCCAGAGGCTGGGGAGGTGCAGAGGTTTACTGAACCTTTGGCAACTTTAGCAGGTTACAGGAGAGCAAAG : GGGAAAATAATGTTTGGCATACTGCTAAGATATGAGAATAATACGAAAACCGAGTCAGATACATGGATTCGTGTGGGAGAAGAAATAATTCCAAATGGAGATAGGCATTGATTGTTTTTCGTGGAAGTTCCTATTTGAGACTTGTAAGTAGTCACAACAGAGGTGATACAAGTGTTCAATATTGTGAAGCAGCGCAAAAAACACTTGCTCTAGCCAGGTCAATACATCAAACTGTACTTTGTTGCTGTTCTCTATCTGCAAAAGAGTATGTTCTTCTAAAAGAACTCGCTAAGATCTTCATTCTTTGTAACCAGTACTATTATAAGCTAATAAATACCCAATCGTAATATTAACTTCTTTGGGGCTGCGTATAGTTTTATGTGTAAGTTTTTAGTTTGTGTAGTGACTCGGTGTGCAAGTACAACCCATGGATGATGCAAAAATCCTCAGGACATCGCCATGATCTTATTAACAGTGCTTTCTCGAGAGTTGAGACCAAACGGGTGGAAAAGATAGTGAACGTTGAAAGCTTTATTCCTCTCAACTATGAAGGTTAATTATGAATGTACATGTTAATACTTAGCAATATTGGTGGAATAATATGTTTGTCATTTTGTTTTCACTCTTCGCAAAGGAACAAAGAATCCATTGCTCAAATTTCAGAAGTAAAAGGATATACTACTATCAATTATGTCTTGACTAAAGA : AGTCAAAAAAAATATAGAGATATTATGAATAGGAGAAAAA</gDNA_template>
            <first_frame> H  S  F  E  F  V  P  G  L  S  K  K  F  Q  S  Q  P  L  Q  N  E  H  R  I  G  E  R  A  I  S  E  G  I  W  K  L  L  W  L  C  Q  F  P  Q  K  H  *  *  N  *  S  Y  *  I  *  A  L  K  R :   Y  G  I  L  G  S  C  W  G  D  S  L  F  R  V  S  N  G  S  C  V  *  G  P  Q  F  Y  S  L  W  K  S  S :   *  P  E  H  L  *  F  G  Y  R  G  H  C  W  E  S  T  P  T   : G  P  *  F  L  Q  C  I  T  K  R  I  *  L  Y  I  H  F  W  G  N  S  C  T  K  A  C  R  *  D  I  P  M  E  Q  *  Q  Q  F  Y  V  L  N  G  E  S  *  Q  R  P  W  D  *  G  :  I  C  S  Q  *  R  S  C  C  F  C  S  *  H  *  R  Y  T  C  W  *  I  R  K  P  T  V  *  L  K  T  N  T  A  P  H  S  E  K  K  *  R  W  R  S  E  R  R  D  D  R :   *  H  I  Q  L  V  C  I  P  I  R  M  Q  F  F  R  S  K  I  R  P  *  P  D  *  D  Y  Q  R  R  V  *  K  N  L  R  K  L  P  V  F  Q  :  R  L  L  V  S  S  D  R  C  C  *  R  M  C  Y  Q  S  T  K  F  I  N  V  *  S  R  L  C  C  V  L  I  L  Q   : V  I  W  L  S  N  W  P  W  S  T  H  C  S  K  G :   C  C  *  A  D  E  E  D  L  L  *  W  R :   H  G  D  C  S  Y  C  *  R  *  L  F  Q  K  K  R  R  C  R  G  I  F  *  G  W  N  H  F  I  L  E  H  N  S  N  S  T  W  V  Q  N  N  *  Y  A  N  D  I  F  D  F  P  :  A  Y  N  I  N  C  S  I  C  E  E  *  A  F  G  T  E  A  *  K  W  R  I  C  L  H  A  V  R   : V  I  I  *  *  D  G  P  H  S  F  I  Q  H  E  K  T  R  W  N  M  V  W  I  P  *  G  G  K  I  G  N  L  G  R  N  S  T  A   : D  R  M  F  L  Q  S  W  C  L  C  *  I  S  W  F  V  T  L  G  S  S  F  K  Y  *   : G  W  A  C  V  L  G  *  S  *  H  F  T  W  K  T  N  W  S  S  Q  S  I  F  W  L  H  V  N  I  R  R  C  H   : E  I  R  Q  L  R  G  K  *  F  C  D  I  I  F  *  S  V  C  I  A  A  K  V  H  L  S  A  N  *  R :   D  C  R  S  C  C  T  A  F  P  H  I  Y  Y  C  L  S  N  K  V  L  C  G  I  *  C  G  S  V  A  S  N  I  Y  W :   V  I  A  *  S  *  M  D  S  Q  E  H  N  R  *  N  S  Y  P  K  E   : G  S  R  N  V  L  Y  L  H  A  D  *  S  Q  F  G  E  T  V  C  R  V  T  S  L  Q  G  E  I  A  D  *  T  Q  I  Q  L  T  G  H  *  K  R  *  N  G  Y  P  K  S  *  :  I  *  S  H  K  L  Q  Q  *  G  *  Y  L  V  Q  Q  G  D  *  S  T  L  H  S  T  K  K  F  R  F  P  E  S  L  L  H  K  *  E  R  E  S  W  H  V  Q  G  C  W  C  *  I  E  F  C  *  *  S  P  I  S  A  D  I  *  R  K  H  K  G  P  Q  L  *  A  E  I  * :   W  T  K  E  K  W  W  T  S  S  T  S  W  C  N  E  I  S  T  Q  S  C  S  I  *  W  *  T  I  C  R  R  W  M  E  Q  Y  K  Y  W  R  Q  I  F  Y   : V  I  G  W  L  Q  S  L  P  D  D  Q  Y  K  S  R  G  W  G  G  A  E  V  Y  *  T  F  G  N  F  S  R  L  Q  E  S  K   : G  E  N  N  V  W  H  T  A  K  I  *  E  *  Y  E  N  R  V  R  Y  M  D  S  C  G  R  R  N  N  S  K  W  R  *  A  L  I  V  F  R  G  S  S  Y  L  R  L  V  S  S  H  N  R  G  D  T  S  V  Q  Y  C  E  A  A  Q  K  T  L  A  L  A  R  S  I  H  Q  T  V  L  C  C  C  S  L  S  A  K  E  Y  V  L  L  K  E  L  A  K  I  F  I  L  C  N  Q  Y  Y  Y  K  L  I  N  T  Q  S  *  Y  *  L  L  W  G  C  V  *  F  Y  V  *  V  F  S  L  C  S  D  S  V  C  K  Y  N  P  W  M  M  Q  K  S  S  G  H  R  H  D  L  I  N  S  A  F  S  R  V  E  T  K  R  V  E  K  I  V  N  V  E  S  F  I  P  L  N  Y  E  G  *  L  *  M  Y  M  L  I  L  S  N  I  G  G  I  I  C  L  S  F  C  F  H  S  S  Q  R  N  K  E  S  I  A  Q  I  S  E  V  K  G  Y  T  T  I  N  Y  V  L  T  K  E :   V  K  K  N  I  E  I  L  *  I  G  E  K </first_frame>
            <second_frame>  I  H  L  S  L  F  R  A  *  V  R  N  S  N  R  N  R  C  K  M  N  I  E  S  E  K  E  Q  F  L  K  E  F  G  S  Y  Y  G  Y  A  N  S  P  K  N  I  D  E  I  R  A  T  E  F  K  R  L  N   : D  T  V  Y  L  D  H  A  G  A  T  L  Y  S  E  S  Q  M  E  A  V  F  K  D  L  N  S  T  L  Y  G  N  P   : H  S  Q  S  T  C  S  L  A  T  E  D  I  V  G  K  A  R  Q  Q  :  V  L  S  F  F  N  A  S  P  R  E  Y  S  C  I  F  T  S  G  A  T  A  A  L  K  L  V  G  E  T  F  P  W  S  S  N  S  S  F  M  Y  S  M  E  N  H  N  S  V  L  G  I  R  E :   Y  A  L  S  K  G  A  A  A  F  A  V  D  I  E  D  T  H  V  G  E  S  E  S  P  Q  S  N  L  K  L  T  Q  H  H  I  Q  R  R  N  E  G  G  V  L  K  E  G  M  T   : G  N  T  Y  N  L  F  A  F  P  S  E  C  N  F  S  G  R  K  F  D  P  N  L  I  K  I  I  K  E  G  S  E  R  I  L  E  S  S  Q  Y  S  R :   G  C  W  L  V  L  I  D  A  A  K  G  C  A  T  N  P  P  N  L  S  M  F  K  A  D  F  V  V  F  S  F  Y  K  :  L  F  G  Y  P  T  G  L  G  A  L  I  V  R  K   : D  A  A  K  L  M  K  K  T  Y  F  S  G   : G  T  V  T  A  A  I  A  D  V  D  F  F  K  R  R  E  G  V  E  E  F  F  E  D  G  T  I  S  F  L  S  I  T  A  I  Q  H  G  F  K  I  I  N  M  L  T  T  S  S  I  F  R :   H  T  T  S  I  A  A  Y  V  R  N  K  L  L  A  L  K  H  E  N  G  E  F  V  C  T  L  Y  G  :  L  L  S  S  E  M  G  P  T  V  S  F  N  M  K  R  P  D  G  T  W  Y  G  Y  R  E  V  E  K  L  A  T  L  A  G  I  Q  L  R  :  T  G  C  F  C  N  P  G  A  C  A  K  Y  L  G  L  S  H  L  D  L  L  S  N  I  E  :  A  G  H  V  C  W  D  D  R  D  I  L  H  G  K  P  T  G  A  V  R  V  S  F  G  Y  M  S  T  F  E  D  A  M  :  K  F  V  N  F  V  E  S  N  F  V  I  S  S  F  N  R  C  A  L  Q  P  R  S  I  S  L  P  I  E   : G  I  A  E  A  A  A  R  H  F  L  T  S  I  T  V  Y  P  I  K  S  C  A  G  F  S  V  D  Q  W  P  L  T  S  T   : G  L  L  H  D  R  E  W  I  L  K  S  T  T  G  E  I  L  T  Q  K  K  :  V  P  E  M  C  Y  I  S  T  L  I  D  L  N  L  G  K  L  F  V  E  S  P  R  C  K  E  K  L  Q  I  E  L  K  S  S  S  L  V  T  E  R  D  E  M  D  I  Q  N  H  R :   Y  E  V  T  S  Y  N  N  E  V  D  I  W  F  S  R  A  I  D  R  P  C  T  L  L  R  N  S  D  S  Q  S  H  S  C  I  N  K  N  G  S  P  G  M  C  R  D  V  G  A  R  L  N  F  V  N  E  A  Q  F  L  L  I  S  E  E  S  I  K  D  L  N  S  R  L  K  S   : N  G  R  R  R  N  G  G  Q  A  V  Q  V  G  V  M  R  F  R  P  N  L  V  A  S  S  G  E  P  Y  A  E  D  G  W  S  N  I  N  I  G  G  K  Y  F  M  :  S  L  G  G  C  N  R  C  Q  M  I  N  I  N  P  E  A  G  E  V  Q  R  F  T  E  P  L  A  T  L  A  G  Y  R  R  A  K  :  G  K  I  M  F  G  I  L  L  R  Y  E  N  N  T  K  T  E  S  D  T  W  I  R  V  G  E  E  I  I  P  N  G  D  R  H  *  L  F  F  V  E  V  P  I  *  D  L  *  V  V  T  T  E  V  I  Q  V  F  N  I  V  K  Q  R  K  K  H  L  L  *  P  G  Q  Y  I  K  L  Y  F  V  A  V  L  Y  L  Q  K  S  M  F  F  *  K  N  S  L  R  S  S  F  F  V  T  S  T  I  I  S  *  *  I  P  N  R  N  I  N  F  F  G  A  A  Y  S  F  M  C  K  F  L  V  C  V  V  T  R  C  A  S  T  T  H  G  *  C  K  N  P  Q  D  I  A  M  I  L  L  T  V  L  S  R  E  L  R  P  N  G  W  K  R  *  *  T  L  K  A  L  F  L  S  T  M  K  V  N  Y  E  C  T  C  *  Y  L  A  I  L  V  E  *  Y  V  C  H  F  V  F  T  L  R  K  G  T  K  N  P  L  L  K  F  Q  K  *  K  D  I  L  L  S  I  M  S  *  L  K   : K  S  K  K  I  *  R  Y  Y  E  *  E  K   </second_frame>
            <third_frame>   F  I  *  V  C  S  G  L  E  *  E  I  P  I  A  T  A  A  K  *  T  S  N  R  R  K  S  N  F  *  R  N  L  E  A  I  M  V  M  P  I  P  P  K  T  L  M  K  L  E  L  L  N  L  S  A  *  T  :  I  R  Y  T  W  I  M  L  G  R  L  S  I  P  S  L  K  W  K  L  C  L  R  T  S  I  L  L  F  M  E  I  L  :  I  A  R  A  L  V  V  W  L  P  R  T  L  L  G  K  H  A  N  R :   S  L  V  S  S  M  H  H  Q  E  N  I  A  V  Y  S  L  L  G  Q  Q  L  H  *  S  L  S  V  R  H  S  H  G  A  V  T  A  V  L  C  T  Q  W  R  I  I  T  A  S  L  G  L  G   : N  M  L  S  V  K  E  L  L  L  L  Q  L  T  L  K  I  H  M  L  V  N  Q  K  A  H  S  L  T  *  N  *  H  S  T  T  F  R  E  E  M  K  V  A  F  *  K  K  G  *  Q  :  V  T  H  T  T  C  L  H  S  H  Q  N  A  I  F  Q  V  E  N  S  T  L  T  *  L  R  L  S  K  K  G  L  K  E  S  *  K  A  P  S  I  P   : E  V  A  G  *  F  *  *  M  L  L  K  D  V  L  P  I  H  Q  I  Y  Q  C  L  K  Q  T  L  L  C  S  H  S  T  S :   Y  L  A  I  Q  L  A  L  E  H  S  L  F  E  R  :  M  L  L  S  *  *  R  R  P  T  L  V  E  :  A  R  *  L  Q  L  L  L  T  L  T  F  S  K  E  E  K  V  *  R  N  F  L  R  M  E  P  F  H  S  *  A  *  Q  Q  F  N  M  G  S  K  *  L  I  C  *  R  H  L  R  F  S   : G  I  Q  H  Q  L  Q  H  M  *  G  I  S  F  W  H  *  S  M  K  M  E  N  L  F  A  R  C  T  G :   Y  Y  L  V  R  W  A  P  Q  F  H  S  T  *  K  D  Q  M  E  H  G  M  D  T  V  R  W  K  N  W  Q  P  W  Q  E  F  N  C  G :   Q  D  V  F  A  I  L  V  L  V  L  N  I  L  V  C  H  T  W  I  F  F  Q  I  L  R :   L  G  M  C  A  G  M  I  V  T  F  Y  M  E  N  Q  L  E  Q  S  E  Y  L  L  V  T  C  Q  H  S  K  M  P  * :   N  S  S  T  S  W  K  V  I  L  *  Y  H  L  L  I  G  V  H  C  S  Q  G  P  S  L  C  Q  L  K  :  G  L  Q  K  L  L  H  G  I  S  S  H  L  L  L  S  I  Q  *  S  L  V  R  D  L  V  W  I  S  G  L  *  H  L  L  :  G  Y  C  M  I  V  N  G  F  S  R  A  Q  P  V  K  F  L  P  K  R  R :   F  Q  K  C  A  I  S  P  R  *  L  I  S  I  W  G  N  C  L  *  S  H  L  V  A  R  R  N  C  R  L  N  S  N  P  A  H  W  S  L  K  E  M  K  W  I  S  K  I  I   : D  M  K  S  Q  V  T  T  M  R  L  I  S  G  S  A  G  R  L  I  D  L  A  L  Y  *  E  I  P  I  P  R  V  T  P  A  *  I  R  T  G  V  L  A  C  A  G  M  L  V  L  D  *  I  L  L  M  K  P  N  F  C  *  Y  L  K  K  A  *  R  T  S  T  L  G  *  N  L  :  M  D  E  G  E  M  V  D  K  Q  Y  K  L  V  *  *  D  F  D  P  I  L  *  H  L  V  V  N  H  M  Q  K  M  D  G  A  I  *  I  L  E  A  N  I  L  C :   H  W  V  V  A  I  V  A  R  *  S  I  *  I  Q  R  L  G  R  C  R  G  L  L  N  L  W  Q  L  *  Q  V  T  G  E  Q  R :   G  K  *  C  L  A  Y  C  *  D  M  R  I  I  R  K  P  S  Q  I  H  G  F  V  W  E  K  K  *  F  Q  M  E  I  G  I  D  C  F  S  W  K  F  L  F  E  T  C  K  *  S  Q  Q  R  *  Y  K  C  S  I  L  *  S  S  A  K  N  T  C  S  S  Q  V  N  T  S  N  C  T  L  L  L  F  S  I  C  K  R  V  C  S  S  K  R  T  R  *  D  L  H  S  L  *  P  V  L  L  *  A  N  K  Y  P  I  V  I  L  T  S  L  G  L  R  I  V  L  C  V  S  F  *  F  V  *  *  L  G  V  Q  V  Q  P  M  D  D  A  K  I  L  R  T  S  P  *  S  Y  *  Q  C  F  L  E  S  *  D  Q  T  G  G  K  D  S  E  R  *  K  L  Y  S  S  Q  L  *  R  L  I  M  N  V  H  V  N  T  *  Q  Y  W  W  N  N  M  F  V  I  L  F  S  L  F  A  K  E  Q  R  I  H  C  S  N  F  R  S  K  R  I  Y  Y  Y  Q  L  C  L  D  *  R  :  S  Q  K  K  Y  R  D  I  M  N  R  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8324" stop="8471"/>
                    <exon start="8549" stop="8647"/>
                    <exon start="8759" stop="8817"/>
                    <exon start="9046" stop="9206"/>
                    <exon start="10090" stop="10241"/>
                    <exon start="10531" stop="10657"/>
                    <exon start="11187" stop="11289"/>
                    <exon start="11413" stop="11458"/>
                    <exon start="11735" stop="11773"/>
                    <exon start="11853" stop="12009"/>
                    <exon start="12712" stop="12799"/>
                    <exon start="13138" stop="13254"/>
                    <exon start="14134" stop="14211"/>
                    <exon start="14301" stop="14402"/>
                    <exon start="15152" stop="15242"/>
                    <exon start="15413" stop="15517"/>
                    <exon start="15717" stop="15781"/>
                    <exon start="16689" stop="16840"/>
                    <exon start="18477" stop="18709"/>
                    <exon start="19237" stop="19373"/>
                    <exon start="19533" stop="19643"/>
                    <exon start="19737" stop="19847"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2478</number_coding_nucleotides>
                  <number_encoded_amino_acids>826</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRNSNRNRCKMNIESEKEQFLKEFGSYYGYANSPKNIDEIRATEFKRLNDTVYLDHAGATLYSESQMEAVFKDLNSTLYGNPHSQSTCSLATEDIVGKARQQVLSFFNASPREYSCIFTSGATAALKLVGETFPWSSNSSFMYSMENHNSVLGIREYALSKGAAAFAVDIEDTHVGESESPQSNLKLTQHHIQRRNEGGVLKEGMTGNTYNLFAFPSECNFSGRKFDPNLIKIIKEGSERILESSQYSRGCWLVLIDAAKGCATNPPNLSMFKADFVVFSFYKLFGYPTGLGALIVRKDAAKLMKKTYFSGGTVTAAIADVDFFKRREGVEEFFEDGTISFLSITAIQHGFKIINMLTTSSIFRHTTSIAAYVRNKLLALKHENGEFVCTLYGLLSSEMGPTVSFNMKRPDGTWYGYREVEKLATLAGIQLRTGCFCNPGACAKYLGLSHLDLLSNIEAGHVCWDDRDILHGKPTGAVRVSFGYMSTFEDAMKFVNFVESNFVISSFNRCALQPRSISLPIEGIAEAAARHFLTSITVYPIKSCAGFSVDQWPLTSTGLLHDREWILKSTTGEILTQKKVPEMCYISTLIDLNLGKLFVESPRCKEKLQIELKSSSLVTERDEMDIQNHRYEVTSYNNEVDIWFSRAIDRPCTLLRNSDSQSHSCINKNGSPGMCRDVGARLNFVNEAQFLLISEESIKDLNSRLKSNGRRRNGGQAVQVGVMRFRPNLVASSGEPYAEDGWSNINIGGKYFMSLGGCNRCQMININPEAGEVQRFTEPLATLAGYRRAKGKIMFGILLRYENNTKTESDTWIRVGEEIIPNGDRH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19841" stop="20083"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALIVFRGSSYLRLVSSHNRGDTSVQYCEAAQKTLALARSIHQTVLCCCSLSAKEYVLLKELAKIFILCNQYYYKLINTQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="22817" PGL_stop="26145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22817" e_stop="23069"/>
            <exon e_start="24081" e_stop="24486"/>
            <exon e_start="25098" e_stop="25304"/>
            <exon e_start="25415" e_stop="25592"/>
            <exon e_start="25682" e_stop="26145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.747" e_score="0.927"/>
          <exon-intron don_prob="0.888" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="22817" e_stop="23069" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.747">
            <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24081" e_stop="24486" e_length="406"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25098" e_stop="25304" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.775">
            <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25415" e_stop="25592" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.898" acc_prob="0.984">
            <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25682" e_stop="26145" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22817" stop="23069"/>
              <exon start="24081" stop="24410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22827" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22837" stop="23069"/>
              <exon start="24081" stop="24442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22870" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22871" stop="23069"/>
              <exon start="24081" stop="24318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22872" stop="23069"/>
              <exon start="24081" stop="24409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22873" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22875" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22879" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22880" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22882" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22882" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22882" stop="23069"/>
              <exon start="24081" stop="24486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22882" stop="23069"/>
              <exon start="24081" stop="24362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22888" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22888" stop="23069"/>
              <exon start="24081" stop="24435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22888" stop="23069"/>
              <exon start="24081" stop="24409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22973" stop="23069"/>
              <exon start="24081" stop="24486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23021" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24111" stop="24486"/>
              <exon start="25098" stop="25226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24116" stop="24486"/>
              <exon start="25098" stop="25294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24141" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24190" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="25858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24190" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="25816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24255" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="25932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24300" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24368" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="25835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="25953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25106" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="25980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25122" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="25980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25149" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="26093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25157" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="26066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25170" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="26065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25437" stop="25592"/>
              <exon start="25682" stop="26029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25471" stop="25592"/>
              <exon start="25682" stop="26066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25506" stop="25592"/>
              <exon start="25682" stop="26090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25699" stop="26029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25729" stop="26029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25742" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25796" stop="26139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25820" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25838" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATAAGTAGCCAACAACAAACAACACCTTCATTTTCTCTCTAATCAATTCCTTCGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG : CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT : GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG : GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG : TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</gDNA_template>
            <first_frame> G  *  V  A  N  N  K  Q  H  L  H  F  L  S  N  Q  F  L  R  K  W  R  N  S  S  L  *  M  L  Q  I  *  A  P  V  P  F  Y  Q  L  G  F  L  R  L  A  V  N  L  H  F  H  F  N  A  G  G  S  T  L  P  G  L  P  L  L  *  N  S  K  L  K  L  R  S  L  S  S  E  L  E  H  E  E   : A  P  *  L  L  P  K  L  M  R  L  E  K  S  *  *  P  R  F  L  T  W  L  K  R  E  P  L  R  *  *  *  *  K  P  Q  V  I  R  Y  *  V  S  L  L  Q  I  L  V  E  K  G  C  S  Q  K  K  *  T  K  P  S  S  M  A  I  L  I  L  L  S  T  Q  *  K  M  C  P  H  I  C  Q  R  R  L  S  Y  R  A  T  F  H  V  K  M  *  G  M  H  S  F  L  *  L  Q  V  P  W  L  N  F  H  Q  E  A  Q  L  V  L  L  H  *  G  E  S  P  R  F  S  T  A  I  P  H  S  M :   C  W  R  I  S  E  A  M  S  R  Q  G  *  R  N  *  M  R  E  *  F  K  L  H  Y  W  H  W  Q  G  L  S  V  *  I  *  Q  K  M  Y  H  R  S  F  L  *  R  I  C  Y  Q  L  L  L  R  V  P  L  V  L  P  A  E  V  M  T  R  Q  W :   P  T  T  L  L  L  *  I  M  K  K  P  D  *  Q  *  F  V  R  E  H  F  *  R  P  W  M  G  L  V  A  P  Q  L  L  A  M  P  V  E  V  K  M  E  I  V  F  L  K  D  *  L  P  L  Q  M  E  R  E  :  L  L  K  P  L  E  R  D  L  I  R  L  K  T  *  Y  G  W  V  K  M  L  A  R  N  Y  F  R  K  Q  V  Q  D  F  L  A  T  E  *  S  L  C  S  Y  G  R  P  L  P  M  K  N  A  E  M  Y  R  I  T  G  I  E  I  G  I  L  Y  F  T  P  T  I  G  L  *  V  Y  L  S  L  *  L  Y  R  Q  *  N  L  N  T  L  Y  V  S  V  A  F  P  L  Q  F  G  V  Y  P  R  N  G  E  C  L  Q  I  C  R  K  V  V  L  A  D  L  D  C  F  *  S  L  *  V  I  C  A  T  V  V  S  *  R  K  S  I  S  S  L  A  *  F  M  Q  G  V  W  S   </first_frame>
            <second_frame>  D  K  *  P  T  T  N  N  T  F  I  F  S  L  I  N  S  F  G  N  G  E  I  R  R  S  K  C  F  K  F  E  L  R  F  P  F  T  N  W  V  F  F  A  L  P  *  I  C  T  F  T  S  T  P  A  G  P  R  Y  Q  G  F  R  C  S  R  T  A  S  S  N  *  G  R  C  H  Q  S  W  N  T  R  K  :  P  P  S  S  C  P  S  L  *  D  S  R  K  A  N  S  L  V  S  *  P  G  *  R  G  S  H  *  D  S  N  N  K  N  H  R  *  *  D  I  K  S  A  S  C  R  Y  W  W  K  R  V  V  H  K  R  N  R  R  S  P  H  Q  W  R  Y  *  Y  C  C  P  L  N  E  R  C  A  H  I  S  A  R  E  D  Y  L  T  V  Q  P  S  T  *  R  C  E  G  C  I  H  F  F  N  C  R  F  P  G  *  T  S  I  R  K  H  N  W  Y  C  F  T  E  E  K  V  P  D  S  P  P  L  S  L  T  Q   : C  V  G  E  F  Q  R  Q  C  P  D  K  V  E  E  T  E  *  G  S  S  S  S  Y  I  I  G  T  G  R  A  *  A  S  E  Y  D  R  K  C  I  I  D  P  F  Y  R  G  Y  A  T  S  C  C  S  G  C  H  W  Y  C  L  Q  K  *  *  R  D  N   : G  Q  L  H  C  C  F  K  S  *  R  N  Q  I  S  N  S  L  *  E  S  I  F  D  D  L  G  W  V  L  S  H  P  N  C  W  L  C  L  S  R  *  R  W  R  L  Y  F  *  R  I  S  C  L  S  R  W  N  A  S :   Y  *  N  L  *  K  G  T  L  Y  V  *  R  H  D  T  D  G  *  R  C  W  P  G  T  T  F  E  S  R  S  R  I  F  W  Q  L  S  K  A  Y  A  L  M  V  D  L  C  L  *  K  M  Q  R  C  I  E  *  Q  G  *  R  S  E  F  Y  I  S  P  L  L  *  D  Y  E  S  T  Y  P  C  N  C  I  G  N  R  I  *  I  L  C  M  L  V  *  H  F  H  F  N  L  E  C  I  R  G  M  V  N  V  C  R  F  V  E  K  L  Y  W  R  I  W  I  V  F  N  H  C  E  *  F  V  Q  L  L  *  A  N  E  R  V  F  H  R  W  L  N  L  C  K  G  F  G  P  </second_frame>
            <third_frame>   I  S  S  Q  Q  Q  T  T  P  S  F  S  L  *  S  I  P  S  E  M  E  K  F  V  A  L  N  A  S  N  L  S  S  G  S  L  L  P  I  G  F  S  S  P  C  R  K  S  A  L  S  L  Q  R  R  R  V  H  V  T  R  A  S  V  A  L  E  Q  Q  A  Q  T  K  V  A  V  I  R  V  G  T  R  G  S :   P  L  A  L  A  Q  A  Y  E  T  R  E  K  L  I  A  S  F  P  D  L  A  E  E  G  A  I  E  I  V  I  I  K  T  T  G  D  K  I  L  S  Q  P  L  A  D  I  G  G  K  G  L  F  T  K  E  I  D  E  A  L  I  N  G  D  I  D  I  A  V  H  S  M  K  D  V  P  T  Y  L  P  E  K  T  I  L  P  C  N  L  P  R  E  D  V  R  D  A  F  I  S  L  T  A  G  S  L  A  E  L  P  S  G  S  T  I  G  T  A  S  L  R  R  K  S  Q  I  L  H  R  Y  P  S  L  N  :  V  L  E  N  F  R  G  N  V  Q  T  R  L  K  K  L  N  E  G  V  V  Q  A  T  L  L  A  L  A  G  L  K  R  L  N  M  T  E  N  V  S  S  I  L  S  I  E  D  M  L  P  A  V  A  Q  G  A  I  G  I  A  C  R  S  D  D  E  T  M  :  A  N  Y  I  A  A  L  N  H  E  E  T  R  L  A  I  V  C  E  R  A  F  L  T  T  L  D  G  S  C  R  T  P  I  A  G  Y  A  C  R  G  E  D  G  D  C  I  F  K  G  L  V  A  S  P  D  G  T  R   : V  I  E  T  S  R  K  G  P  Y  T  S  E  D  M  I  R  M  G  E  D  A  G  Q  E  L  L  S  K  A  G  P  G  F  F  G  N  *  V  K  L  M  L  L  W  S  T  S  A  Y  E  K  C  R  D  V  S  N  N  R  D  R  D  R  N  F  I  F  H  P  Y  Y  R  I  M  S  L  L  I  L  V  T  V  S  A  I  E  F  E  Y  F  V  C  *  C  S  I  S  T  S  I  W  S  V  S  E  E  W  *  M  F  A  D  L  *  K  S  C  T  G  G  F  G  L  F  L  I  T  V  S  N  L  C  N  C  C  K  L  T  K  E  Y  F  I  V  G  L  I  Y  A  R  G  L  V  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22861" stop="23069"/>
                    <exon start="24081" stop="24486"/>
                    <exon start="25098" stop="25304"/>
                    <exon start="25415" stop="25592"/>
                    <exon start="25682" stop="25794"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1110</number_coding_nucleotides>
                  <number_encoded_amino_acids>370</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIPSEMEKFVALNASNLSSGSLLPIGFSSPCRKSALSLQRRRVHVTRASVALEQQAQTKVAVIRVGTRGSPLALAQAYETREKLIASFPDLAEEGAIEIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLTAGSLAELPSGSTIGTASLRRKSQILHRYPSLNVLENFRGNVQTRLKKLNEGVVQATLLALAGLKRLNMTENVSSILSIEDMLPAVAQGAIGIACRSDDETMANYIAALNHEETRLAIVCERAFLTTLDGSCRTPIAGYACRGEDGDCIFKGLVASPDGTRVIETSRKGPYTSEDMIRMGEDAGQELLSKAGPGFFGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22817" e_stop="23069"/>
            <exon e_start="24081" e_stop="24486"/>
            <exon e_start="25098" e_stop="25304"/>
            <exon e_start="25415" e_stop="25440"/>
            <exon e_start="25682" e_stop="26145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.747" e_score="0.927"/>
          <exon-intron don_prob="0.888" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="22817" e_stop="23069" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.747">
            <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24081" e_stop="24486" e_length="406"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25098" e_stop="25304" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.775">
            <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25415" e_stop="25440" e_length="26"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="25441" i_stop="25681" i_length="241"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25682" e_stop="26145" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22817" stop="23069"/>
              <exon start="24081" stop="24410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22827" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22837" stop="23069"/>
              <exon start="24081" stop="24442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22870" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22871" stop="23069"/>
              <exon start="24081" stop="24318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22872" stop="23069"/>
              <exon start="24081" stop="24409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22873" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22875" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22879" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22880" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22882" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22882" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22882" stop="23069"/>
              <exon start="24081" stop="24486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22882" stop="23069"/>
              <exon start="24081" stop="24362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22888" stop="23069"/>
              <exon start="24081" stop="24435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22888" stop="23069"/>
              <exon start="24081" stop="24409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22973" stop="23069"/>
              <exon start="24081" stop="24486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23021" stop="23069"/>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24111" stop="24486"/>
              <exon start="25098" stop="25226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24116" stop="24486"/>
              <exon start="25098" stop="25294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24277" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25440"/>
              <exon start="25682" stop="25986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24277" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25440"/>
              <exon start="25682" stop="25945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25699" stop="26029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25729" stop="26029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25742" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25796" stop="26139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25820" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25838" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATAAGTAGCCAACAACAAACAACACCTTCATTTTCTCTCTAATCAATTCCTTCGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG : CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT : GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG : GCCAACTACATTGCTGCTTTAAATCA : TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</gDNA_template>
            <first_frame> G  *  V  A  N  N  K  Q  H  L  H  F  L  S  N  Q  F  L  R  K  W  R  N  S  S  L  *  M  L  Q  I  *  A  P  V  P  F  Y  Q  L  G  F  L  R  L  A  V  N  L  H  F  H  F  N  A  G  G  S  T  L  P  G  L  P  L  L  *  N  S  K  L  K  L  R  S  L  S  S  E  L  E  H  E  E   : A  P  *  L  L  P  K  L  M  R  L  E  K  S  *  *  P  R  F  L  T  W  L  K  R  E  P  L  R  *  *  *  *  K  P  Q  V  I  R  Y  *  V  S  L  L  Q  I  L  V  E  K  G  C  S  Q  K  K  *  T  K  P  S  S  M  A  I  L  I  L  L  S  T  Q  *  K  M  C  P  H  I  C  Q  R  R  L  S  Y  R  A  T  F  H  V  K  M  *  G  M  H  S  F  L  *  L  Q  V  P  W  L  N  F  H  Q  E  A  Q  L  V  L  L  H  *  G  E  S  P  R  F  S  T  A  I  P  H  S  M :   C  W  R  I  S  E  A  M  S  R  Q  G  *  R  N  *  M  R  E  *  F  K  L  H  Y  W  H  W  Q  G  L  S  V  *  I  *  Q  K  M  Y  H  R  S  F  L  *  R  I  C  Y  Q  L  L  L  R  V  P  L  V  L  P  A  E  V  M  T  R  Q  W :   P  T  T  L  L  L  *  I   : I  I  E  T  S  R  K  G  P  Y  T  S  E  D  M  I  R  M  G  E  D  A  G  Q  E  L  L  S  K  A  G  P  G  F  F  G  N  *  V  K  L  M  L  L  W  S  T  S  A  Y  E  K  C  R  D  V  S  N  N  R  D  R  D  R  N  F  I  F  H  P  Y  Y  R  I  M  S  L  L  I  L  V  T  V  S  A  I  E  F  E  Y  F  V  C  *  C  S  I  S  T  S  I  W  S  V  S  E  E  W  *  M  F  A  D  L  *  K  S  C  T  G  G  F  G  L  F  L  I  T  V  S  N  L  C  N  C  C  K  L  T  K  E  Y  F  I  V  G  L  I  Y  A  R  G  L  V  Q </first_frame>
            <second_frame>  D  K  *  P  T  T  N  N  T  F  I  F  S  L  I  N  S  F  G  N  G  E  I  R  R  S  K  C  F  K  F  E  L  R  F  P  F  T  N  W  V  F  F  A  L  P  *  I  C  T  F  T  S  T  P  A  G  P  R  Y  Q  G  F  R  C  S  R  T  A  S  S  N  *  G  R  C  H  Q  S  W  N  T  R  K  :  P  P  S  S  C  P  S  L  *  D  S  R  K  A  N  S  L  V  S  *  P  G  *  R  G  S  H  *  D  S  N  N  K  N  H  R  *  *  D  I  K  S  A  S  C  R  Y  W  W  K  R  V  V  H  K  R  N  R  R  S  P  H  Q  W  R  Y  *  Y  C  C  P  L  N  E  R  C  A  H  I  S  A  R  E  D  Y  L  T  V  Q  P  S  T  *  R  C  E  G  C  I  H  F  F  N  C  R  F  P  G  *  T  S  I  R  K  H  N  W  Y  C  F  T  E  E  K  V  P  D  S  P  P  L  S  L  T  Q   : C  V  G  E  F  Q  R  Q  C  P  D  K  V  E  E  T  E  *  G  S  S  S  S  Y  I  I  G  T  G  R  A  *  A  S  E  Y  D  R  K  C  I  I  D  P  F  Y  R  G  Y  A  T  S  C  C  S  G  C  H  W  Y  C  L  Q  K  *  *  R  D  N   : G  Q  L  H  C  C  F  K  S  :  L  L  K  P  L  E  R  D  L  I  R  L  K  T  *  Y  G  W  V  K  M  L  A  R  N  Y  F  R  K  Q  V  Q  D  F  L  A  T  E  *  S  L  C  S  Y  G  R  P  L  P  M  K  N  A  E  M  Y  R  I  T  G  I  E  I  G  I  L  Y  F  T  P  T  I  G  L  *  V  Y  L  S  L  *  L  Y  R  Q  *  N  L  N  T  L  Y  V  S  V  A  F  P  L  Q  F  G  V  Y  P  R  N  G  E  C  L  Q  I  C  R  K  V  V  L  A  D  L  D  C  F  *  S  L  *  V  I  C  A  T  V  V  S  *  R  K  S  I  S  S  L  A  *  F  M  Q  G  V  W  S   </second_frame>
            <third_frame>   I  S  S  Q  Q  Q  T  T  P  S  F  S  L  *  S  I  P  S  E  M  E  K  F  V  A  L  N  A  S  N  L  S  S  G  S  L  L  P  I  G  F  S  S  P  C  R  K  S  A  L  S  L  Q  R  R  R  V  H  V  T  R  A  S  V  A  L  E  Q  Q  A  Q  T  K  V  A  V  I  R  V  G  T  R  G  S :   P  L  A  L  A  Q  A  Y  E  T  R  E  K  L  I  A  S  F  P  D  L  A  E  E  G  A  I  E  I  V  I  I  K  T  T  G  D  K  I  L  S  Q  P  L  A  D  I  G  G  K  G  L  F  T  K  E  I  D  E  A  L  I  N  G  D  I  D  I  A  V  H  S  M  K  D  V  P  T  Y  L  P  E  K  T  I  L  P  C  N  L  P  R  E  D  V  R  D  A  F  I  S  L  T  A  G  S  L  A  E  L  P  S  G  S  T  I  G  T  A  S  L  R  R  K  S  Q  I  L  H  R  Y  P  S  L  N  :  V  L  E  N  F  R  G  N  V  Q  T  R  L  K  K  L  N  E  G  V  V  Q  A  T  L  L  A  L  A  G  L  K  R  L  N  M  T  E  N  V  S  S  I  L  S  I  E  D  M  L  P  A  V  A  Q  G  A  I  G  I  A  C  R  S  D  D  E  T  M  :  A  N  Y  I  A  A  L  N  H :   Y  *  N  L  *  K  G  T  L  Y  V  *  R  H  D  T  D  G  *  R  C  W  P  G  T  T  F  E  S  R  S  R  I  F  W  Q  L  S  K  A  Y  A  L  M  V  D  L  C  L  *  K  M  Q  R  C  I  E  *  Q  G  *  R  S  E  F  Y  I  S  P  L  L  *  D  Y  E  S  T  Y  P  C  N  C  I  G  N  R  I  *  I  L  C  M  L  V  *  H  F  H  F  N  L  E  C  I  R  G  M  V  N  V  C  R  F  V  E  K  L  Y  W  R  I  W  I  V  F  N  H  C  E  *  F  V  Q  L  L  *  A  N  E  R  V  F  H  R  W  L  N  L  C  K  G  F  G  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22861" stop="23069"/>
                    <exon start="24081" stop="24486"/>
                    <exon start="25098" stop="25304"/>
                    <exon start="25415" stop="25440"/>
                    <exon start="25682" stop="25688"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIPSEMEKFVALNASNLSSGSLLPIGFSSPCRKSALSLQRRRVHVTRASVALEQQAQTKVAVIRVGTRGSPLALAQAYETREKLIASFPDLAEEGAIEIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLTAGSLAELPSGSTIGTASLRRKSQILHRYPSLNVLENFRGNVQTRLKKLNEGVVQATLLALAGLKRLNMTENVSSILSIEDMLPAVAQGAIGIACRSDDETMANYIAALNHY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="22865" e_stop="23069"/>
            <exon e_start="24076" e_stop="24486"/>
            <exon e_start="25098" e_stop="25304"/>
            <exon e_start="25415" e_stop="25592"/>
            <exon e_start="25682" e_stop="26145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="0.985"/>
          <exon-intron don_prob="0.888" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="22865" e_stop="23069" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="23070" i_stop="24075" i_length="1006"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24076" e_stop="24486" e_length="411"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24487" i_stop="25097" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25098" e_stop="25304" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.775">
            <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25415" e_stop="25592" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.898" acc_prob="0.984">
            <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25682" e_stop="26145" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22865" stop="23069"/>
              <exon start="24076" stop="24486"/>
              <exon start="25098" stop="25200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24081" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24111" stop="24486"/>
              <exon start="25098" stop="25226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24116" stop="24486"/>
              <exon start="25098" stop="25294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24141" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24190" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="25858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24190" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="25816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24255" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="25932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24300" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24368" stop="24486"/>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="25835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25098" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="25953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25106" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="25980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25122" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="25980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25149" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="26093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25157" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="26066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25170" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="26065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25437" stop="25592"/>
              <exon start="25682" stop="26029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25471" stop="25592"/>
              <exon start="25682" stop="26066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25506" stop="25592"/>
              <exon start="25682" stop="26090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25699" stop="26029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25729" stop="26029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25742" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25796" stop="26139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25820" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25838" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCTTCGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG : GACAGCCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAGATGTGAGGGATGCATTCATTTCTTTAACTGCAGGTTCCCTGGCTGAACTTCCATCAGGAAGCACAATTGGTACTGCTTCACTGAGGAGAAAGTCCCAGATTCTCCACCGCTATCCCTCACTCAAT : GTGTTGGAGAATTTCAGAGGCAATGTCCAGACAAGGTTGAAGAAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG : GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG : TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</gDNA_template>
            <first_frame> F  L  R  K  W  R  N  S  S  L  *  M  L  Q  I  *  A  P  V  P  F  Y  Q  L  G  F  L  R  L  A  V  N  L  H  F  H  F  N  A  G  G  S  T  L  P  G  L  P  L  L  *  N  S  K  L  K  L  R  S  L  S  S  E  L  E  H  E  E   : G  Q  P  P  S  S  C  P  S  L  *  D  S  R  K  A  N  S  L  V  S  *  P  G  *  R  G  S  H  *  D  S  N  N  K  N  H  R  *  *  D  I  K  S  A  S  C  R  Y  W  W  K  R  V  V  H  K  R  N  R  R  S  P  H  Q  W  R  Y  *  Y  C  C  P  L  N  E  R  C  A  H  I  S  A  R  E  D  Y  L  T  V  Q  P  S  T  *  R  C  E  G  C  I  H  F  F  N  C  R  F  P  G  *  T  S  I  R  K  H  N  W  Y  C  F  T  E  E  K  V  P  D  S  P  P  L  S  L  T  Q   : C  V  G  E  F  Q  R  Q  C  P  D  K  V  E  E  T  E  *  G  S  S  S  S  Y  I  I  G  T  G  R  A  *  A  S  E  Y  D  R  K  C  I  I  D  P  F  Y  R  G  Y  A  T  S  C  C  S  G  C  H  W  Y  C  L  Q  K  *  *  R  D  N   : G  Q  L  H  C  C  F  K  S  *  R  N  Q  I  S  N  S  L  *  E  S  I  F  D  D  L  G  W  V  L  S  H  P  N  C  W  L  C  L  S  R  *  R  W  R  L  Y  F  *  R  I  S  C  L  S  R  W  N  A  S :   Y  *  N  L  *  K  G  T  L  Y  V  *  R  H  D  T  D  G  *  R  C  W  P  G  T  T  F  E  S  R  S  R  I  F  W  Q  L  S  K  A  Y  A  L  M  V  D  L  C  L  *  K  M  Q  R  C  I  E  *  Q  G  *  R  S  E  F  Y  I  S  P  L  L  *  D  Y  E  S  T  Y  P  C  N  C  I  G  N  R  I  *  I  L  C  M  L  V  *  H  F  H  F  N  L  E  C  I  R  G  M  V  N  V  C  R  F  V  E  K  L  Y  W  R  I  W  I  V  F  N  H  C  E  *  F  V  Q  L  L  *  A  N  E  R  V  F  H  R  W  L  N  L  C  K  G  F  G  P  </first_frame>
            <second_frame>  S  F  G  N  G  E  I  R  R  S  K  C  F  K  F  E  L  R  F  P  F  T  N  W  V  F  F  A  L  P  *  I  C  T  F  T  S  T  P  A  G  P  R  Y  Q  G  F  R  C  S  R  T  A  S  S  N  *  G  R  C  H  Q  S  W  N  T  R  K  :  D  S  P  L  A  L  A  Q  A  Y  E  T  R  E  K  L  I  A  S  F  P  D  L  A  E  E  G  A  I  E  I  V  I  I  K  T  T  G  D  K  I  L  S  Q  P  L  A  D  I  G  G  K  G  L  F  T  K  E  I  D  E  A  L  I  N  G  D  I  D  I  A  V  H  S  M  K  D  V  P  T  Y  L  P  E  K  T  I  L  P  C  N  L  P  R  E  D  V  R  D  A  F  I  S  L  T  A  G  S  L  A  E  L  P  S  G  S  T  I  G  T  A  S  L  R  R  K  S  Q  I  L  H  R  Y  P  S  L  N  :  V  L  E  N  F  R  G  N  V  Q  T  R  L  K  K  L  N  E  G  V  V  Q  A  T  L  L  A  L  A  G  L  K  R  L  N  M  T  E  N  V  S  S  I  L  S  I  E  D  M  L  P  A  V  A  Q  G  A  I  G  I  A  C  R  S  D  D  E  T  M  :  A  N  Y  I  A  A  L  N  H  E  E  T  R  L  A  I  V  C  E  R  A  F  L  T  T  L  D  G  S  C  R  T  P  I  A  G  Y  A  C  R  G  E  D  G  D  C  I  F  K  G  L  V  A  S  P  D  G  T  R   : V  I  E  T  S  R  K  G  P  Y  T  S  E  D  M  I  R  M  G  E  D  A  G  Q  E  L  L  S  K  A  G  P  G  F  F  G  N  *  V  K  L  M  L  L  W  S  T  S  A  Y  E  K  C  R  D  V  S  N  N  R  D  R  D  R  N  F  I  F  H  P  Y  Y  R  I  M  S  L  L  I  L  V  T  V  S  A  I  E  F  E  Y  F  V  C  *  C  S  I  S  T  S  I  W  S  V  S  E  E  W  *  M  F  A  D  L  *  K  S  C  T  G  G  F  G  L  F  L  I  T  V  S  N  L  C  N  C  C  K  L  T  K  E  Y  F  I  V  G  L  I  Y  A  R  G  L  V  Q </second_frame>
            <third_frame>   P  S  E  M  E  K  F  V  A  L  N  A  S  N  L  S  S  G  S  L  L  P  I  G  F  S  S  P  C  R  K  S  A  L  S  L  Q  R  R  R  V  H  V  T  R  A  S  V  A  L  E  Q  Q  A  Q  T  K  V  A  V  I  R  V  G  T  R  G  R :   T  A  P  *  L  L  P  K  L  M  R  L  E  K  S  *  *  P  R  F  L  T  W  L  K  R  E  P  L  R  *  *  *  *  K  P  Q  V  I  R  Y  *  V  S  L  L  Q  I  L  V  E  K  G  C  S  Q  K  K  *  T  K  P  S  S  M  A  I  L  I  L  L  S  T  Q  *  K  M  C  P  H  I  C  Q  R  R  L  S  Y  R  A  T  F  H  V  K  M  *  G  M  H  S  F  L  *  L  Q  V  P  W  L  N  F  H  Q  E  A  Q  L  V  L  L  H  *  G  E  S  P  R  F  S  T  A  I  P  H  S  M :   C  W  R  I  S  E  A  M  S  R  Q  G  *  R  N  *  M  R  E  *  F  K  L  H  Y  W  H  W  Q  G  L  S  V  *  I  *  Q  K  M  Y  H  R  S  F  L  *  R  I  C  Y  Q  L  L  L  R  V  P  L  V  L  P  A  E  V  M  T  R  Q  W :   P  T  T  L  L  L  *  I  M  K  K  P  D  *  Q  *  F  V  R  E  H  F  *  R  P  W  M  G  L  V  A  P  Q  L  L  A  M  P  V  E  V  K  M  E  I  V  F  L  K  D  *  L  P  L  Q  M  E  R  E  :  L  L  K  P  L  E  R  D  L  I  R  L  K  T  *  Y  G  W  V  K  M  L  A  R  N  Y  F  R  K  Q  V  Q  D  F  L  A  T  E  *  S  L  C  S  Y  G  R  P  L  P  M  K  N  A  E  M  Y  R  I  T  G  I  E  I  G  I  L  Y  F  T  P  T  I  G  L  *  V  Y  L  S  L  *  L  Y  R  Q  *  N  L  N  T  L  Y  V  S  V  A  F  P  L  Q  F  G  V  Y  P  R  N  G  E  C  L  Q  I  C  R  K  V  V  L  A  D  L  D  C  F  *  S  L  *  V  I  C  A  T  V  V  S  *  R  K  S  I  S  S  L  A  *  F  M  Q  G  V  W  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23037" stop="23069"/>
                    <exon start="24076" stop="24486"/>
                    <exon start="25098" stop="25304"/>
                    <exon start="25415" stop="25592"/>
                    <exon start="25682" stop="25794"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRCHQSWNTRKDSPLALAQAYETREKLIASFPDLAEEGAIEIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLTAGSLAELPSGSTIGTASLRRKSQILHRYPSLNVLENFRGNVQTRLKKLNEGVVQATLLALAGLKRLNMTENVSSILSIEDMLPAVAQGAIGIACRSDDETMANYIAALNHEETRLAIVCERAFLTTLDGSCRTPIAGYACRGEDGDCIFKGLVASPDGTRVIETSRKGPYTSEDMIRMGEDAGQELLSKAGPGFFGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="22871" e_stop="23069"/>
            <exon e_start="24081" e_stop="24361"/>
            <exon e_start="25140" e_stop="25304"/>
            <exon e_start="25415" e_stop="25592"/>
            <exon e_start="25682" e_stop="26145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22871" e_stop="23069" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.747">
            <gDNA_intron_boundary i_start="23070" i_stop="24080" i_length="1011"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24081" e_stop="24361" e_length="281"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24362" i_stop="25139" i_length="778"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25140" e_stop="25304" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.775">
            <gDNA_intron_boundary i_start="25305" i_stop="25414" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25415" e_stop="25592" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.898" acc_prob="0.984">
            <gDNA_intron_boundary i_start="25593" i_stop="25681" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25682" e_stop="26145" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22871" stop="23069"/>
              <exon start="24081" stop="24318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22879" stop="23069"/>
              <exon start="24081" stop="24361"/>
              <exon start="25140" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="25749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25149" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="26093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25157" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="26066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25170" stop="25304"/>
              <exon start="25415" stop="25592"/>
              <exon start="25682" stop="26065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25437" stop="25592"/>
              <exon start="25682" stop="26029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25471" stop="25592"/>
              <exon start="25682" stop="26066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25506" stop="25592"/>
              <exon start="25682" stop="26090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25699" stop="26029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25729" stop="26029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25742" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25796" stop="26139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25820" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25838" stop="26145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAAATGGAGAAATTCGTCGCTCTAAATGCTTCAAATTTGAGCTCCGGTTCCCTTTTACCAATTGGGTTTTCTTCGCCTTGCCGTAAATCTGCACTTTCACTTCAACGCCGGCGGGTCCACGTTACCAGGGCTTCCGTTGCTCTAGAACAGCAAGCTCAAACTAAGGTCGCTGTCATCAGAGTTGGAACACGAGGAAG : CCCCCTAGCTCTTGCCCAAGCTTATGAGACTCGAGAAAAGCTAATAGCCTCGTTTCCTGACCTGGCTGAAGAGGGAGCCATTGAGATAGTAATAATAAAAACCACAGGTGATAAGATATTAAGTCAGCCTCTTGCAGATATTGGTGGAAAAGGGTTGTTCACAAAAGAAATAGACGAAGCCCTCATCAATGGCGATATTGATATTGCTGTCCACTCAATGAAAGATGTGCCCACATATCTGCCAGAGAAGACTATCTTACCGTGCAACCTTCCACGTGAAG : AAACTGAATGAGGGAGTAGTTCAAGCTACATTATTGGCACTGGCAGGGCTTAAGCGTCTGAATATGACAGAAAATGTATCATCGATCCTTTCTATAGAGGATATGCTACCAGCTGTTGCTCAGGGTGCCATTGGTATTGCCTGCAGAAGTGATGACGAGACAATG : GCCAACTACATTGCTGCTTTAAATCATGAAGAAACCAGATTAGCAATAGTTTGTGAGAGAGCATTTTTGACGACCTTGGATGGGTCTTGTCGCACCCCAATTGCTGGCTATGCCTGTCGAGGTGAAGATGGAGATTGTATTTTTAAAGGATTAGTTGCCTCTCCAGATGGAACGCGAG : TTATTGAAACCTCTAGAAAGGGACCTTATACGTCTGAAGACATGATACGGATGGGTGAAGATGCTGGCCAGGAACTACTTTCGAAAGCAGGTCCAGGATTTTTTGGCAACTGAGTAAAGCTTATGCTCTTATGGTCGACCTCTGCCTATGAAAAATGCAGAGATGTATCGAATAACAGGGATAGAGATCGGAATTTTATATTTCACCCCTACTATAGGATTATGAGTCTACTTATCCTTGTAACTGTATCGGCAATAGAATTTGAATACTTTGTATGTTAGTGTAGCATTTCCACTTCAATTTGGAGTGTATCCGAGGAATGGTGAATGTTTGCAGATTTGTAGAAAAGTTGTACTGGCGGATTTGGATTGTTTTTAATCACTGTGAGTAATTTGTGCAACTGTTGTAAGCTAACGAAAGAGTATTTCATCGTTGGCTTAATTTATGCAAGGGGTTTGGTCCAA</gDNA_template>
            <first_frame> R  K  W  R  N  S  S  L  *  M  L  Q  I  *  A  P  V  P  F  Y  Q  L  G  F  L  R  L  A  V  N  L  H  F  H  F  N  A  G  G  S  T  L  P  G  L  P  L  L  *  N  S  K  L  K  L  R  S  L  S  S  E  L  E  H  E  E   : A  P  *  L  L  P  K  L  M  R  L  E  K  S  *  *  P  R  F  L  T  W  L  K  R  E  P  L  R  *  *  *  *  K  P  Q  V  I  R  Y  *  V  S  L  L  Q  I  L  V  E  K  G  C  S  Q  K  K  *  T  K  P  S  S  M  A  I  L  I  L  L  S  T  Q  *  K  M  C  P  H  I  C  Q  R  R  L  S  Y  R  A  T  F  H  V  K  :  K  L  N  E  G  V  V  Q  A  T  L  L  A  L  A  G  L  K  R  L  N  M  T  E  N  V  S  S  I  L  S  I  E  D  M  L  P  A  V  A  Q  G  A  I  G  I  A  C  R  S  D  D  E  T  M  :  A  N  Y  I  A  A  L  N  H  E  E  T  R  L  A  I  V  C  E  R  A  F  L  T  T  L  D  G  S  C  R  T  P  I  A  G  Y  A  C  R  G  E  D  G  D  C  I  F  K  G  L  V  A  S  P  D  G  T  R   : V  I  E  T  S  R  K  G  P  Y  T  S  E  D  M  I  R  M  G  E  D  A  G  Q  E  L  L  S  K  A  G  P  G  F  F  G  N  *  V  K  L  M  L  L  W  S  T  S  A  Y  E  K  C  R  D  V  S  N  N  R  D  R  D  R  N  F  I  F  H  P  Y  Y  R  I  M  S  L  L  I  L  V  T  V  S  A  I  E  F  E  Y  F  V  C  *  C  S  I  S  T  S  I  W  S  V  S  E  E  W  *  M  F  A  D  L  *  K  S  C  T  G  G  F  G  L  F  L  I  T  V  S  N  L  C  N  C  C  K  L  T  K  E  Y  F  I  V  G  L  I  Y  A  R  G  L  V  Q </first_frame>
            <second_frame>  G  N  G  E  I  R  R  S  K  C  F  K  F  E  L  R  F  P  F  T  N  W  V  F  F  A  L  P  *  I  C  T  F  T  S  T  P  A  G  P  R  Y  Q  G  F  R  C  S  R  T  A  S  S  N  *  G  R  C  H  Q  S  W  N  T  R  K  :  P  P  S  S  C  P  S  L  *  D  S  R  K  A  N  S  L  V  S  *  P  G  *  R  G  S  H  *  D  S  N  N  K  N  H  R  *  *  D  I  K  S  A  S  C  R  Y  W  W  K  R  V  V  H  K  R  N  R  R  S  P  H  Q  W  R  Y  *  Y  C  C  P  L  N  E  R  C  A  H  I  S  A  R  E  D  Y  L  T  V  Q  P  S  T  *  R :   N  *  M  R  E  *  F  K  L  H  Y  W  H  W  Q  G  L  S  V  *  I  *  Q  K  M  Y  H  R  S  F  L  *  R  I  C  Y  Q  L  L  L  R  V  P  L  V  L  P  A  E  V  M  T  R  Q  W :   P  T  T  L  L  L  *  I  M  K  K  P  D  *  Q  *  F  V  R  E  H  F  *  R  P  W  M  G  L  V  A  P  Q  L  L  A  M  P  V  E  V  K  M  E  I  V  F  L  K  D  *  L  P  L  Q  M  E  R  E  :  L  L  K  P  L  E  R  D  L  I  R  L  K  T  *  Y  G  W  V  K  M  L  A  R  N  Y  F  R  K  Q  V  Q  D  F  L  A  T  E  *  S  L  C  S  Y  G  R  P  L  P  M  K  N  A  E  M  Y  R  I  T  G  I  E  I  G  I  L  Y  F  T  P  T  I  G  L  *  V  Y  L  S  L  *  L  Y  R  Q  *  N  L  N  T  L  Y  V  S  V  A  F  P  L  Q  F  G  V  Y  P  R  N  G  E  C  L  Q  I  C  R  K  V  V  L  A  D  L  D  C  F  *  S  L  *  V  I  C  A  T  V  V  S  *  R  K  S  I  S  S  L  A  *  F  M  Q  G  V  W  S   </second_frame>
            <third_frame>   E  M  E  K  F  V  A  L  N  A  S  N  L  S  S  G  S  L  L  P  I  G  F  S  S  P  C  R  K  S  A  L  S  L  Q  R  R  R  V  H  V  T  R  A  S  V  A  L  E  Q  Q  A  Q  T  K  V  A  V  I  R  V  G  T  R  G  S :   P  L  A  L  A  Q  A  Y  E  T  R  E  K  L  I  A  S  F  P  D  L  A  E  E  G  A  I  E  I  V  I  I  K  T  T  G  D  K  I  L  S  Q  P  L  A  D  I  G  G  K  G  L  F  T  K  E  I  D  E  A  L  I  N  G  D  I  D  I  A  V  H  S  M  K  D  V  P  T  Y  L  P  E  K  T  I  L  P  C  N  L  P  R  E   : E  T  E  *  G  S  S  S  S  Y  I  I  G  T  G  R  A  *  A  S  E  Y  D  R  K  C  I  I  D  P  F  Y  R  G  Y  A  T  S  C  C  S  G  C  H  W  Y  C  L  Q  K  *  *  R  D  N   : G  Q  L  H  C  C  F  K  S  *  R  N  Q  I  S  N  S  L  *  E  S  I  F  D  D  L  G  W  V  L  S  H  P  N  C  W  L  C  L  S  R  *  R  W  R  L  Y  F  *  R  I  S  C  L  S  R  W  N  A  S :   Y  *  N  L  *  K  G  T  L  Y  V  *  R  H  D  T  D  G  *  R  C  W  P  G  T  T  F  E  S  R  S  R  I  F  W  Q  L  S  K  A  Y  A  L  M  V  D  L  C  L  *  K  M  Q  R  C  I  E  *  Q  G  *  R  S  E  F  Y  I  S  P  L  L  *  D  Y  E  S  T  Y  P  C  N  C  I  G  N  R  I  *  I  L  C  M  L  V  *  H  F  H  F  N  L  E  C  I  R  G  M  V  N  V  C  R  F  V  E  K  L  Y  W  R  I  W  I  V  F  N  H  C  E  *  F  V  Q  L  L  *  A  N  E  R  V  F  H  R  W  L  N  L  C  K  G  F  G  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24302" stop="24361"/>
                    <exon start="25140" stop="25304"/>
                    <exon start="25415" stop="25592"/>
                    <exon start="25682" stop="25794"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMCPHICQRRLSYRATFHVKKLNEGVVQATLLALAGLKRLNMTENVSSILSIEDMLPAVAQGAIGIACRSDDETMANYIAALNHEETRLAIVCERAFLTTLDGSCRTPIAGYACRGEDGDCIFKGLVASPDGTRVIETSRKGPYTSEDMIRMGEDAGQELLSKAGPGFFGN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22873" stop="23069"/>
                    <exon start="24081" stop="24361"/>
                    <exon start="25140" stop="25150"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEKFVALNASNLSSGSLLPIGFSSPCRKSALSLQRRRVHVTRASVALEQQAQTKVAVIRVGTRGSPLALAQAYETREKLIASFPDLAEEGAIEIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREETE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="26712" PGL_stop="30413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26712" e_stop="26993"/>
            <exon e_start="27936" e_stop="28062"/>
            <exon e_start="28914" e_stop="29052"/>
            <exon e_start="29189" e_stop="29277"/>
            <exon e_start="29955" e_stop="30413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.363" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.936" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26712" e_stop="26993" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26994" i_stop="27935" i_length="942"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27936" e_stop="28062" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.363" acc_prob="0.995">
            <gDNA_intron_boundary i_start="28063" i_stop="28913" i_length="851"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28914" e_stop="29052" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.978">
            <gDNA_intron_boundary i_start="29053" i_stop="29188" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29189" e_stop="29277" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.936">
            <gDNA_intron_boundary i_start="29278" i_stop="29954" i_length="677"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="29955" e_stop="30413" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26712" stop="26993"/>
              <exon start="27936" stop="28062"/>
              <exon start="28914" stop="29052"/>
              <exon start="29189" stop="29277"/>
              <exon start="29955" stop="30050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26735" stop="26993"/>
              <exon start="27936" stop="28062"/>
              <exon start="28914" stop="29052"/>
              <exon start="29189" stop="29277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26735" stop="26993"/>
              <exon start="27936" stop="28062"/>
              <exon start="28914" stop="28986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26777" stop="26993"/>
              <exon start="27936" stop="28062"/>
              <exon start="28914" stop="29052"/>
              <exon start="29189" stop="29277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26777" stop="26993"/>
              <exon start="27936" stop="28062"/>
              <exon start="28914" stop="29046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26777" stop="26993"/>
              <exon start="27936" stop="28062"/>
              <exon start="28914" stop="29031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26912" stop="26993"/>
              <exon start="27936" stop="28062"/>
              <exon start="28914" stop="29052"/>
              <exon start="29189" stop="29277"/>
              <exon start="29955" stop="30413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAACTGAGTTTCCCCATACAATCCTCTCTTGTGCAGTATCTTCTAAAGTTGAAATCTCGTATAGAAAAATGAAAGTACACTCCTGCATTCATCCTCTTCCCTCTACTCCCTCCACCGGAATTTTGGTCTCTGCCGGTCCTGCGGAAGCTAAGCTTGCTGCTAACACCAGAAAGCTTTATTCTTTAACTTTGAATTCCTCTAATTATGTCCCATTTCCTTATAAAGATCAGAAATTTTCCAGAAGCAGCTCTACGGATTTTTCTAGAACGGCTATCGGTTCG : AATGTAAGTGAAGATACAGATGACATGTTTGATGATCTCCTAAGAACGCATGGCAAAGTGGTATACAAAAGAAATGACCAAAAACCTGCAAGTGAGGAGATTGATGATGATGCTGAAAGCCTATCGT : TTGCAATGGCTGTGGCTAAAGTTGCAAGTGATGTCAAGGCTGGAGATATAAAGGTCCTCTTTGTCAAGCCTCTAGTATATTGGACTCGGTTTTTCATTATTGCTACTGCATTCTCTCGCCCACAGATTGATGCCATTGG : GACCAGAGTAAGAGATATGGCTGAGGAACAATATGGAAGAGTTGCTTCTGGAGATTCAAAACCCAACTCGTGGACACTACTGGACTTTG : GTGATGTCGTTGTTCATCTATTTCTTCCTCCGCAGCGTGAGTACTACAACCTGGAAGAATTCTATGGCAATGCAGCATCCATCGAACTACCATTTGAGAACCAACAACAATTGCGAGGACCTACTGGTTATTGAAGTCCCAACAGTTATGGCCTCGTGGTGATTAACAGAAAGTGTAGCAAATTATGAGGCAATCACAGTGTTCCCCCGATTGCTGACAAGGAACGATTAACATATCTGGGCAAACTCTGTTGATCCACTGGTTGCGTTATTTTTCTTAAATTAGTAGTAAGATAAAGCTCTCTACTAAGTTGTCTCTGTAGAAGTATTGGTTAAGAAATAGTTTACAAGCATTCTGAACTAATAAGGGCTCATTGTCACGTTTGATGAAAGAACCTAACATCCTGCTTCTTTTTCCCTTGATGTGAGTTGAGTTTAAATGAAGAATGAGGATTTAAAT</gDNA_template>
            <first_frame> A  T  E  F  P  H  T  I  L  S  C  A  V  S  S  K  V  E  I  S  Y  R  K  M  K  V  H  S  C  I  H  P  L  P  S  T  P  S  T  G  I  L  V  S  A  G  P  A  E  A  K  L  A  A  N  T  R  K  L  Y  S  L  T  L  N  S  S  N  Y  V  P  F  P  Y  K  D  Q  K  F  S  R  S  S  S  T  D  F  S  R  T  A  I  G  S  :  N  V  S  E  D  T  D  D  M  F  D  D  L  L  R  T  H  G  K  V  V  Y  K  R  N  D  Q  K  P  A  S  E  E  I  D  D  D  A  E  S  L  S   : F  A  M  A  V  A  K  V  A  S  D  V  K  A  G  D  I  K  V  L  F  V  K  P  L  V  Y  W  T  R  F  F  I  I  A  T  A  F  S  R  P  Q  I  D  A  I  G :   T  R  V  R  D  M  A  E  E  Q  Y  G  R  V  A  S  G  D  S  K  P  N  S  W  T  L  L  D  F   : G  D  V  V  V  H  L  F  L  P  P  Q  R  E  Y  Y  N  L  E  E  F  Y  G  N  A  A  S  I  E  L  P  F  E  N  Q  Q  Q  L  R  G  P  T  G  Y  *  S  P  N  S  Y  G  L  V  V  I  N  R  K  C  S  K  L  *  G  N  H  S  V  P  P  I  A  D  K  E  R  L  T  Y  L  G  K  L  C  *  S  T  G  C  V  I  F  L  K  L  V  V  R  *  S  S  L  L  S  C  L  C  R  S  I  G  *  E  I  V  Y  K  H  S  E  L  I  R  A  H  C  H  V  *  *  K  N  L  T  S  C  F  F  F  P  *  C  E  L  S  L  N  E  E  *  G  F  K  </first_frame>
            <second_frame>  Q  L  S  F  P  I  Q  S  S  L  V  Q  Y  L  L  K  L  K  S  R  I  E  K  *  K  Y  T  P  A  F  I  L  F  P  L  L  P  P  P  E  F  W  S  L  P  V  L  R  K  L  S  L  L  L  T  P  E  S  F  I  L  *  L  *  I  P  L  I  M  S  H  F  L  I  K  I  R  N  F  P  E  A  A  L  R  I  F  L  E  R  L  S  V  R :   M  *  V  K  I  Q  M  T  C  L  M  I  S  *  E  R  M  A  K  W  Y  T  K  E  M  T  K  N  L  Q  V  R  R  L  M  M  M  L  K  A  Y  R  :  L  Q  W  L  W  L  K  L  Q  V  M  S  R  L  E  I  *  R  S  S  L  S  S  L  *  Y  I  G  L  G  F  S  L  L  L  L  H  S  L  A  H  R  L  M  P  L   : G  P  E  *  E  I  W  L  R  N  N  M  E  E  L  L  L  E  I  Q  N  P  T  R  G  H  Y  W  T  L  :  V  M  S  L  F  I  Y  F  F  L  R  S  V  S  T  T  T  W  K  N  S  M  A  M  Q  H  P  S  N  Y  H  L  R  T  N  N  N  C  E  D  L  L  V  I  E  V  P  T  V  M  A  S  W  *  L  T  E  S  V  A  N  Y  E  A  I  T  V  F  P  R  L  L  T  R  N  D  *  H  I  W  A  N  S  V  D  P  L  V  A  L  F  F  L  N  *  *  *  D  K  A  L  Y  *  V  V  S  V  E  V  L  V  K  K  *  F  T  S  I  L  N  *  *  G  L  I  V  T  F  D  E  R  T  *  H  P  A  S  F  S  L  D  V  S  *  V  *  M  K  N  E  D  L  N </second_frame>
            <third_frame>   N  *  V  S  P  Y  N  P  L  L  C  S  I  F  *  S  *  N  L  V  *  K  N  E  S  T  L  L  H  S  S  S  S  L  Y  S  L  H  R  N  F  G  L  C  R  S  C  G  S  *  A  C  C  *  H  Q  K  A  L  F  F  N  F  E  F  L  *  L  C  P  I  S  L  *  R  S  E  I  F  Q  K  Q  L  Y  G  F  F  *  N  G  Y  R  F   : E  C  K  *  R  Y  R  *  H  V  *  *  S  P  K  N  A  W  Q  S  G  I  Q  K  K  *  P  K  T  C  K  *  G  D  *  *  *  C  *  K  P  I  V :   C  N  G  C  G  *  S  C  K  *  C  Q  G  W  R  Y  K  G  P  L  C  Q  A  S  S  I  L  D  S  V  F  H  Y  C  Y  C  I  L  S  P  T  D  *  C  H  W  :  D  Q  S  K  R  Y  G  *  G  T  I  W  K  S  C  F  W  R  F  K  T  Q  L  V  D  T  T  G  L  W :   *  C  R  C  S  S  I  S  S  S  A  A  *  V  L  Q  P  G  R  I  L  W  Q  C  S  I  H  R  T  T  I  *  E  P  T  T  I  A  R  T  Y  W  L  L  K  S  Q  Q  L  W  P  R  G  D  *  Q  K  V  *  Q  I  M  R  Q  S  Q  C  S  P  D  C  *  Q  G  T  I  N  I  S  G  Q  T  L  L  I  H  W  L  R  Y  F  S  *  I  S  S  K  I  K  L  S  T  K  L  S  L  *  K  Y  W  L  R  N  S  L  Q  A  F  *  T  N  K  G  S  L  S  R  L  M  K  E  P  N  I  L  L  L  F  P  L  M  *  V  E  F  K  *  R  M  R  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26712" stop="26993"/>
                    <exon start="27936" stop="28062"/>
                    <exon start="28914" stop="29052"/>
                    <exon start="29189" stop="29277"/>
                    <exon start="29955" stop="30088"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATEFPHTILSCAVSSKVEISYRKMKVHSCIHPLPSTPSTGILVSAGPAEAKLAANTRKLYSLTLNSSNYVPFPYKDQKFSRSSSTDFSRTAIGSNVSEDTDDMFDDLLRTHGKVVYKRNDQKPASEEIDDDAESLSFAMAVAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGTRVRDMAEEQYGRVASGDSKPNSWTLLDFGDVVVHLFLPPQREYYNLEEFYGNAASIELPFENQQQLRGPTGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="34379" PGL_stop="30614"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34379" e_stop="34209"/>
            <exon e_start="33864" e_stop="32767"/>
            <exon e_start="31611" e_stop="31234"/>
            <exon e_start="30947" e_stop="30614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.860" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.997"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34379" e_stop="34209" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34208" i_stop="33865" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33864" e_stop="32767" e_length="1098"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.860">
            <gDNA_intron_boundary i_start="32766" i_stop="31612" i_length="1155"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="31611" e_stop="31234" e_length="378"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31233" i_stop="30948" i_length="286"/>
          </intron>
          <exon e_serial="4" e_score="0.964">
            <gDNA_exon_boundary e_start="30947" e_stop="30614" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34379" stop="34209"/>
              <exon start="33864" stop="33404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34378" stop="34209"/>
              <exon start="33864" stop="33488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34281" stop="34209"/>
              <exon start="33864" stop="33266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34269" stop="34209"/>
              <exon start="33864" stop="33219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34269" stop="34209"/>
              <exon start="33864" stop="33252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34269" stop="34209"/>
              <exon start="33864" stop="33403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33423" stop="32767"/>
              <exon start="31611" stop="31533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32797" stop="32767"/>
              <exon start="31611" stop="31234"/>
              <exon start="30947" stop="30614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395416" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGCCCCAATAATTTCTGTCTCCGGCGATCAGCTGAACGACGGTACTGGTCCTCCCTTTTCGACTTGTGCCTTTTTTTCGCTCTATTCCTCTCGCATTTGGATTCCTCCTCTCTCGAGATTGAGACCTACATGCTTGGTGAAACCGGTTGCAGTGCAACGTCTGCCTATG : TGGGTATGGTCTCGAGTTAATATATTTCAGCACAAGCAGTGCAAAATCTAGAGGATTTCATGGCAGGCAATGGCCTGCCAGCTCTGGGTCGTGTGAAGCTCAGTGATTTGGTACCATTGGAAGGTCTTCCTTCTGATTCGTATAAATTATCTGTCTCAACTTTGTCACAGTCATTGGCTCAGTATTCAGCTGCCATTATACAGCTATCCACAAGTGATGGAGCTCTTTTAAGGTCTAGTCTAGAGTCTGCCCGACTTTACTTTCAACACAAACCCTCTTATCCTGCAGCGGATGTTATTCATTCTGATGATTCTCAGGAGTGGTGTAAGACCTCTGGTTACCATGCAGATCCTCAACAATGGCAAGAAACATATGATTTCAGGCCAGGGCTCACTCCTTCGGAACCCACCACTGAAATTGAATTCCCTCCTGCTGGTTTGGCTGACATATTCTCTTTGCTTGGTAGAGCAGCAAGGGATATATTGGACGCCATCAGCTTCTATTTAAATCTGCGTAGCTCTCCATTTACTGAAATACTTGATAATGTTCCACTCAGAAATCGAGAAACATCATCCTCTGTATTATCCGTCTGTTGTCATTCCAGGCCATCTTTTCAGGGTGCTCAGCACCATGGCCTGACAACTCAAGAGGATGGTCATTTGGGGATGTTCTCGGATCATGAGCATCAGGTTGACAGAAGCCTTGTTACAATTGTTAAGTCGGATAGGCCTGGTCTACATGTAAGAGATTTTCATGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAAGAAGCAATTGTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATATATGGACGCTGTTCTCTCTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAAATGCGGGCTGCTGGTCATGGGGTTGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTAACAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATG : GATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATTAAGCTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATAGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGTTCACCCACATGATCTCCCAAATAAGGCTAAGATTGGATTTCTTGAAACATATGAACCTGGTTGGTCTGCAACTCATGATATGGAGTTGAGCCTAATCGATCCCGGACAGCCAAGTCAACACACTTCTAACT : GAATCTATGTTGCTATCAGAATGCTGCCTGATGAGTGCTTGGATTCATTATACCAATATTTGTCTGCTTAGTTATGCTCGTCTCATGCAGATCTTGCTAATTTGTATATGAACTTCAATTAAGATATGAATGCACAATGAACTGTTCCTTTGTTTATCGTAATCGTTGTCCCTGTACATATTAGTTTGTAAAATTTGATGGAATATTAGTTGTAAATTCCGAATGTACTCCTAGTTTTCTCGGCTCTCATATCTTAGCTCTTGTGGAGCATTTTATGTTGGCCAAAGAGTTTGAATTTATATAGTGGTTGGATCTTAGAAGCTAACTTAACTTC</gDNA_template>
            <first_frame> M  A  P  I  I  S  V  S  G  D  Q  L  N  D  G  T  G  P  P  F  S  T  C  A  F  F  S  L  Y  S  S  R  I  W  I  P  P  L  S  R  L  R  P  T  C  L  V  K  P  V  A  V  Q  R  L  P  M  :  W  V  W  S  R  V  N  I  F  Q  H  K  Q  C  K  I  *  R  I  S  W  Q  A  M  A  C  Q  L  W  V  V  *  S  S  V  I  W  Y  H  W  K  V  F  L  L  I  R  I  N  Y  L  S  Q  L  C  H  S  H  W  L  S  I  Q  L  P  L  Y  S  Y  P  Q  V  M  E  L  F  *  G  L  V  *  S  L  P  D  F  T  F  N  T  N  P  L  I  L  Q  R  M  L  F  I  L  M  I  L  R  S  G  V  R  P  L  V  T  M  Q  I  L  N  N  G  K  K  H  M  I  S  G  Q  G  S  L  L  R  N  P  P  L  K  L  N  S  L  L  L  V  W  L  T  Y  S  L  C  L  V  E  Q  Q  G  I  Y  W  T  P  S  A  S  I  *  I  C  V  A  L  H  L  L  K  Y  L  I  M  F  H  S  E  I  E  K  H  H  P  L  Y  Y  P  S  V  V  I  P  G  H  L  F  R  V  L  S  T  M  A  *  Q  L  K  R  M  V  I  W  G  C  S  R  I  M  S  I  R  L  T  E  A  L  L  Q  L  L  S  R  I  G  L  V  Y  M  *  E  I  F  M  V  T  G  F  L  W  M  V  I  L  A  P  K  K  Q  L  F  I  L  A  L  H  Y  I  R  Q  L  R  A  I  S  A  L  H  F  I  G  Q  T  L  V  I  S  R  V  A  Y  M  D  A  V  L  S  L  L  N  L  C  P  S  P  *  P  T  S  I  V  Q  K  C  G  L  L  V  M  G  L  K  L  N  S  S  F  P  Y  Q  L  M  T  S  C  R  D  Q  L  I  S  C  L  T  G  A  I  S  L  H  S  T  F  Q  Q  S  K  M  :  D  L  *  S  P  *  *  G  E  G  R  V  T  Q  D  L  N  L  F  H  L  Q  R  G  *  D  W  R  H  K  E  F  S  K  R  E  F  K  T  *  L  I  K  R  A  L  S  *  G  S  A  P  *  R  I  V  K  V  T  S  S  H  L  I  A  H  V  R  T  *  E  W  K  L  D  G  H  R  E  F  H  L  F  T  H  M  I  S  Q  I  R  L  R  L  D  F  L  K  H  M  N  L  V  G  L  Q  L  M  I  W  S  *  A  *  S  I  P  D  S  Q  V  N  T  L  L  T  :  E  S  M  L  L  S  E  C  C  L  M  S  A  W  I  H  Y  T  N  I  C  L  L  S  Y  A  R  L  M  Q  I  L  L  I  C  I  *  T  S  I  K  I  *  M  H  N  E  L  F  L  C  L  S  *  S  L  S  L  Y  I  L  V  C  K  I  *  W  N  I  S  C  K  F  R  M  Y  S  *  F  S  R  L  S  Y  L  S  S  C  G  A  F  Y  V  G  Q  R  V  *  I  Y  I  V  V  G  S  *  K  L  T  *  L  </first_frame>
            <second_frame>  W  P  Q  *  F  L  S  P  A  I  S  *  T  T  V  L  V  L  P  F  R  L  V  P  F  F  R  S  I  P  L  A  F  G  F  L  L  S  R  D  *  D  L  H  A  W  *  N  R  L  Q  C  N  V  C  L  C :   G  Y  G  L  E  L  I  Y  F  S  T  S  S  A  K  S  R  G  F  H  G  R  Q  W  P  A  S  S  G  S  C  E  A  Q  *  F  G  T  I  G  R  S  S  F  *  F  V  *  I  I  C  L  N  F  V  T  V  I  G  S  V  F  S  C  H  Y  T  A  I  H  K  *  W  S  S  F  K  V  *  S  R  V  C  P  T  L  L  S  T  Q  T  L  L  S  C  S  G  C  Y  S  F  *  *  F  S  G  V  V  *  D  L  W  L  P  C  R  S  S  T  M  A  R  N  I  *  F  Q  A  R  A  H  S  F  G  T  H  H  *  N  *  I  P  S  C  W  F  G  *  H  I  L  F  A  W  *  S  S  K  G  Y  I  G  R  H  Q  L  L  F  K  S  A  *  L  S  I  Y  *  N  T  *  *  C  S  T  Q  K  S  R  N  I  I  L  C  I  I  R  L  L  S  F  Q  A  I  F  S  G  C  S  A  P  W  P  D  N  S  R  G  W  S  F  G  D  V  L  G  S  *  A  S  G  *  Q  K  P  C  Y  N  C  *  V  G  *  A  W  S  T  C  K  R  F  S  W  S  L  G  S  C  G  W  *  S  W  P  P  R  S  N  C  L  S  W  P  C  I  I  S  G  N  C  G  L  Y  Q  P  C  T  S  S  D  R  H  W  *  S  A  G  *  H  I  W  T  L  F  S  L  F  *  T  Y  A  Q  V  H  D  Q  P  Q  L  F  R  N  A  G  C  W  S  W  G  *  S  S  I  P  A  S  R  T  S  *  *  L  H  A  E  I  N  *  S  V  A  *  Q  E  Q  F  P  Y  I  Q  L  S  N  S  P  R  W :   I  Y  E  A  H  D  E  E  K  E  E  *  L  K  I  *  T  S  S  T  F  K  E  V  E  I  G  G  T  K  S  S  Q  R  E  S  S  R  H  S  *  *  K  G  H  *  A  E  V  L  H  L  K  G  L  *  K  S  H  P  V  T  *  *  P  M  Y  E  H  K  N  G  N  W  M  A  T  G  S  S  I  C  S  P  T  *  S  P  K  *  G  *  D  W  I  S  *  N  I  *  T  W  L  V  C  N  S  *  Y  G  V  E  P  N  R  S  R  T  A  K  S  T  H  F  *  L :   N  L  C  C  Y  Q  N  A  A  *  *  V  L  G  F  I  I  P  I  F  V  C  L  V  M  L  V  S  C  R  S  C  *  F  V  Y  E  L  Q  L  R  Y  E  C  T  M  N  C  S  F  V  Y  R  N  R  C  P  C  T  Y  *  F  V  K  F  D  G  I  L  V  V  N  S  E  C  T  P  S  F  L  G  S  H  I  L  A  L  V  E  H  F  M  L  A  K  E  F  E  F  I  *  W  L  D  L  R  S  *  L  N  F </second_frame>
            <third_frame>   G  P  N  N  F  C  L  R  R  S  A  E  R  R  Y  W  S  S  L  F  D  L  C  L  F  F  A  L  F  L  S  H  L  D  S  S  S  L  E  I  E  T  Y  M  L  G  E  T  G  C  S  A  T  S  A  Y   : V  G  M  V  S  S  *  Y  I  S  A  Q  A  V  Q  N  L  E  D  F  M  A  G  N  G  L  P  A  L  G  R  V  K  L  S  D  L  V  P  L  E  G  L  P  S  D  S  Y  K  L  S  V  S  T  L  S  Q  S  L  A  Q  Y  S  A  A  I  I  Q  L  S  T  S  D  G  A  L  L  R  S  S  L  E  S  A  R  L  Y  F  Q  H  K  P  S  Y  P  A  A  D  V  I  H  S  D  D  S  Q  E  W  C  K  T  S  G  Y  H  A  D  P  Q  Q  W  Q  E  T  Y  D  F  R  P  G  L  T  P  S  E  P  T  T  E  I  E  F  P  P  A  G  L  A  D  I  F  S  L  L  G  R  A  A  R  D  I  L  D  A  I  S  F  Y  L  N  L  R  S  S  P  F  T  E  I  L  D  N  V  P  L  R  N  R  E  T  S  S  S  V  L  S  V  C  C  H  S  R  P  S  F  Q  G  A  Q  H  H  G  L  T  T  Q  E  D  G  H  L  G  M  F  S  D  H  E  H  Q  V  D  R  S  L  V  T  I  V  K  S  D  R  P  G  L  H  V  R  D  F  H  G  H  W  V  L  V  D  G  D  L  G  P  Q  E  A  I  V  Y  P  G  L  A  L  Y  Q  A  T  A  G  Y  I  S  P  A  L  H  R  T  D  I  G  N  Q  Q  G  S  I  Y  G  R  C  S  L  S  F  K  L  M  P  K  S  M  T  N  L  N  C  S  E  M  R  A  A  G  H  G  V  E  A  Q  F  Q  L  P  V  P  V  D  D  F  M  Q  R  S  T  D  Q  L  L  N  R  S  N  F  P  T  F  N  F  P  T  V  Q  D   : G  S  M  K  P  M  M  R  R  R  K  S  N  S  R  S  K  P  L  P  P  S  K  R  L  R  L  E  A  Q  R  V  L  K  E  R  V  Q  D  I  A  D  K  K  G  I  K  L  R  F  C  T  L  K  D  C  E  S  H  I  Q  S  L  D  S  P  C  T  N  I  R  M  E  I  G  W  P  P  G  V  P  F  V  H  P  H  D  L  P  N  K  A  K  I  G  F  L  E  T  Y  E  P  G  W  S  A  T  H  D  M  E  L  S  L  I  D  P  G  Q  P  S  Q  H  T  S  N   : *  I  Y  V  A  I  R  M  L  P  D  E  C  L  D  S  L  Y  Q  Y  L  S  A  *  L  C  S  S  H  A  D  L  A  N  L  Y  M  N  F  N  *  D  M  N  A  Q  *  T  V  P  L  F  I  V  I  V  V  P  V  H  I  S  L  *  N  L  M  E  Y  *  L  *  I  P  N  V  L  L  V  F  S  A  L  I  S  *  L  L  W  S  I  L  C  W  P  K  S  L  N  L  Y  S  G  W  I  L  E  A  N  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33844" stop="32767"/>
                    <exon start="31611" stop="31234"/>
                    <exon start="30947" stop="30946"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1455</number_coding_nucleotides>
                  <number_encoded_amino_acids>485</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YISAQAVQNLEDFMAGNGLPALGRVKLSDLVPLEGLPSDSYKLSVSTLSQSLAQYSAAIIQLSTSDGALLRSSLESARLYFQHKPSYPAADVIHSDDSQEWCKTSGYHADPQQWQETYDFRPGLTPSEPTTEIEFPPAGLADIFSLLGRAARDILDAISFYLNLRSSPFTEILDNVPLRNRETSSSVLSVCCHSRPSFQGAQHHGLTTQEDGHLGMFSDHEHQVDRSLVTIVKSDRPGLHVRDFHGHWVLVDGDLGPQEAIVYPGLALYQATAGYISPALHRTDIGNQQGSIYGRCSLSFKLMPKSMTNLNCSEMRAAGHGVEAQFQLPVPVDDFMQRSTDQLLNRSNFPTFNFPTVQDGSMKPMMRRRKSNSRSKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCTLKDCESHIQSLDSPCTNIRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWSATHDMELSLIDPGQPSQHTSN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34379" stop="34209"/>
                    <exon start="33864" stop="33814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAPIISVSGDQLNDGTGPPFSTCAFFSLYSSRIWIPPLSRLRPTCLVKPVAVQRLPMWVWSRVNIFQHKQCKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33116" e_stop="32767"/>
            <exon e_start="31640" e_stop="31234"/>
            <exon e_start="30947" e_stop="30692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.974"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.990"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="33116" e_stop="32767" e_length="350"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32766" i_stop="31641" i_length="1126"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="31640" e_stop="31234" e_length="407"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31233" i_stop="30948" i_length="286"/>
          </intron>
          <exon e_serial="3" e_score="0.910">
            <gDNA_exon_boundary e_start="30947" e_stop="30692" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33116" stop="32767"/>
              <exon start="31640" stop="31477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33112" stop="32767"/>
              <exon start="31640" stop="31308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32855" stop="32767"/>
              <exon start="31640" stop="31234"/>
              <exon start="30947" stop="30692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433577" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCATGGTCACTGGGTTCTTGTGGATGGTGATCTTGGCCCCCAAGAAGCAATTGTTTATCCTGGCCTTGCATTATATCAGGCAACTGCGGGCTATATCAGCCCTGCACTTCATCGGACAGACATTGGTAATCAGCAGGGTAGCATATATGGACGCTGTTCTCTCTCTTTTAAACTTATGCCCAAGTCCATGACCAACCTCAATTGTTCAGAAATGCGGGCTGCTGGTCATGGGGTTGAAGCTCAATTCCAGCTTCCCGTACCAGTTGATGACTTCATGCAGAGATCAACTGATCAGTTGCTTAACAGGAGCAATTTCCCTACATTCAACTTTCCAACAGTCCAAGATG : GTCCTTGGATCGATGAAATGCTGGTACAGGATCTATGAAGCCCATGATGAGGAGAAGGAAGAGTAACTCAAGATCTAAACCTCTTCCACCTTCAAAGAGGTTGAGATTGGAGGCACAAAGAGTTCTCAAAGAGAGAGTTCAAGACATAGCTGATAAAAAGGGCATTAAGCTGAGGTTCTGCACCTTAAAGGATTGTGAAAGTCACATCCAGTCACTTGATAGCCCATGTACGAACATAAGAATGGAAATTGGATGGCCACCGGGAGTTCCATTTGTTCACCCACATGATCTCCCAAATAAGGCTAAGATTGGATTTCTTGAAACATATGAACCTGGTTGGTCTGCAACTCATGATATGGAGTTGAGCCTAATCGATCCCGGACAGCCAAGTCAACACACTTCTAACT : GAATCTATGTTGCTATCAGAATGCTGCCTGATGAGTGCTTGGATTCATTATACCAATATTTGTCTGCTTAGTTATGCTCGTCTCATGCAGATCTTGCTAATTTGTATATGAACTTCAATTAAGATATGAATGCACAATGAACTGTTCCTTTGTTTATCGTAATCGTTGTCCCTGTACATATTAGTTTGTAAAATTTGATGGAATATTAGTTGTAAATTCCGAATGTACTCCTAGTTTTCTCGGCTCTCATATCTTA</gDNA_template>
            <first_frame> F  S  W  S  L  G  S  C  G  W  *  S  W  P  P  R  S  N  C  L  S  W  P  C  I  I  S  G  N  C  G  L  Y  Q  P  C  T  S  S  D  R  H  W  *  S  A  G  *  H  I  W  T  L  F  S  L  F  *  T  Y  A  Q  V  H  D  Q  P  Q  L  F  R  N  A  G  C  W  S  W  G  *  S  S  I  P  A  S  R  T  S  *  *  L  H  A  E  I  N  *  S  V  A  *  Q  E  Q  F  P  Y  I  Q  L  S  N  S  P  R  W :   S  L  D  R  *  N  A  G  T  G  S  M  K  P  M  M  R  R  R  K  S  N  S  R  S  K  P  L  P  P  S  K  R  L  R  L  E  A  Q  R  V  L  K  E  R  V  Q  D  I  A  D  K  K  G  I  K  L  R  F  C  T  L  K  D  C  E  S  H  I  Q  S  L  D  S  P  C  T  N  I  R  M  E  I  G  W  P  P  G  V  P  F  V  H  P  H  D  L  P  N  K  A  K  I  G  F  L  E  T  Y  E  P  G  W  S  A  T  H  D  M  E  L  S  L  I  D  P  G  Q  P  S  Q  H  T  S  N   : *  I  Y  V  A  I  R  M  L  P  D  E  C  L  D  S  L  Y  Q  Y  L  S  A  *  L  C  S  S  H  A  D  L  A  N  L  Y  M  N  F  N  *  D  M  N  A  Q  *  T  V  P  L  F  I  V  I  V  V  P  V  H  I  S  L  *  N  L  M  E  Y  *  L  *  I  P  N  V  L  L  V  F  S  A  L  I  S   </first_frame>
            <second_frame>  F  H  G  H  W  V  L  V  D  G  D  L  G  P  Q  E  A  I  V  Y  P  G  L  A  L  Y  Q  A  T  A  G  Y  I  S  P  A  L  H  R  T  D  I  G  N  Q  Q  G  S  I  Y  G  R  C  S  L  S  F  K  L  M  P  K  S  M  T  N  L  N  C  S  E  M  R  A  A  G  H  G  V  E  A  Q  F  Q  L  P  V  P  V  D  D  F  M  Q  R  S  T  D  Q  L  L  N  R  S  N  F  P  T  F  N  F  P  T  V  Q  D   : G  P  W  I  D  E  M  L  V  Q  D  L  *  S  P  *  *  G  E  G  R  V  T  Q  D  L  N  L  F  H  L  Q  R  G  *  D  W  R  H  K  E  F  S  K  R  E  F  K  T  *  L  I  K  R  A  L  S  *  G  S  A  P  *  R  I  V  K  V  T  S  S  H  L  I  A  H  V  R  T  *  E  W  K  L  D  G  H  R  E  F  H  L  F  T  H  M  I  S  Q  I  R  L  R  L  D  F  L  K  H  M  N  L  V  G  L  Q  L  M  I  W  S  *  A  *  S  I  P  D  S  Q  V  N  T  L  L  T  :  E  S  M  L  L  S  E  C  C  L  M  S  A  W  I  H  Y  T  N  I  C  L  L  S  Y  A  R  L  M  Q  I  L  L  I  C  I  *  T  S  I  K  I  *  M  H  N  E  L  F  L  C  L  S  *  S  L  S  L  Y  I  L  V  C  K  I  *  W  N  I  S  C  K  F  R  M  Y  S  *  F  S  R  L  S  Y  L  </second_frame>
            <third_frame>   F  M  V  T  G  F  L  W  M  V  I  L  A  P  K  K  Q  L  F  I  L  A  L  H  Y  I  R  Q  L  R  A  I  S  A  L  H  F  I  G  Q  T  L  V  I  S  R  V  A  Y  M  D  A  V  L  S  L  L  N  L  C  P  S  P  *  P  T  S  I  V  Q  K  C  G  L  L  V  M  G  L  K  L  N  S  S  F  P  Y  Q  L  M  T  S  C  R  D  Q  L  I  S  C  L  T  G  A  I  S  L  H  S  T  F  Q  Q  S  K  M  :  V  L  G  S  M  K  C  W  Y  R  I  Y  E  A  H  D  E  E  K  E  E  *  L  K  I  *  T  S  S  T  F  K  E  V  E  I  G  G  T  K  S  S  Q  R  E  S  S  R  H  S  *  *  K  G  H  *  A  E  V  L  H  L  K  G  L  *  K  S  H  P  V  T  *  *  P  M  Y  E  H  K  N  G  N  W  M  A  T  G  S  S  I  C  S  P  T  *  S  P  K  *  G  *  D  W  I  S  *  N  I  *  T  W  L  V  C  N  S  *  Y  G  V  E  P  N  R  S  R  T  A  K  S  T  H  F  *  L :   N  L  C  C  Y  Q  N  A  A  *  *  V  L  G  F  I  I  P  I  F  V  C  L  V  M  L  V  S  C  R  S  C  *  F  V  Y  E  L  Q  L  R  Y  E  C  T  M  N  C  S  F  V  Y  R  N  R  C  P  C  T  Y  *  F  V  K  F  D  G  I  L  V  V  N  S  E  C  T  P  S  F  L  G  S  H  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31624" stop="31234"/>
                    <exon start="30947" stop="30946"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NAGTGSMKPMMRRRKSNSRSKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCTLKDCESHIQSLDSPCTNIRMEIGWPPGVPFVHPHDLPNKAKIGFLETYEPGWSATHDMELSLIDPGQPSQHTSN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33115" stop="32767"/>
                    <exon start="31640" stop="31603"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHGHWVLVDGDLGPQEAIVYPGLALYQATAGYISPALHRTDIGNQQGSIYGRCSLSFKLMPKSMTNLNCSEMRAAGHGVEAQFQLPVPVDDFMQRSTDQLLNRSNFPTFNFPTVQDGPWIDEMLVQDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="32357" e_stop="31921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="32357" e_stop="31921" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32357" stop="31921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAGAACCTCAACACAGCATTCCTTCTTCTTCTTCTTACGAGGAATCTAAGACATCTTGACTTGTATTAGGATCATCTATGCACTAAAAACTCAAAAGAAGGATTCAATTCATCTTAAGTTTCTGTAAGGAGCTGTTTGTAGCTTCAAAATATCTTTAATTTCTTTCCTTCCAATCCGAAAAAAGTACTTGGTGTTAATTTTGAAGATTTATTTAGAACAAAAACAAAATGCTGACTGAAGCTGGTGTCTCACGTATGATTGGTCAGAAATATGAAAAGTTTTGTGACAAGCTTAGCCGTTTTTCATAATTAAAAGTGAAAGGTCTTAGTTTTGCTTGTTGAGGACCTGAAGGACTGTTATTATCTCGAATATCTGGAAATGACTTTCAAACATGGTCAAAGTAGATAAAGCAGCCTCTATTGGTTTAATCATG</gDNA_template>
            <first_frame> R  K  E  P  Q  H  S  I  P  S  S  S  S  Y  E  E  S  K  T  S  *  L  V  L  G  S  S  M  H  *  K  L  K  R  R  I  Q  F  I  L  S  F  C  K  E  L  F  V  A  S  K  Y  L  *  F  L  S  F  Q  S  E  K  S  T  W  C  *  F  *  R  F  I  *  N  K  N  K  M  L  T  E  A  G  V  S  R  M  I  G  Q  K  Y  E  K  F  C  D  K  L  S  R  F  S  *  L  K  V  K  G  L  S  F  A  C  *  G  P  E  G  L  L  L  S  R  I  S  G  N  D  F  Q  T  W  S  K  *  I  K  Q  P  L  L  V  *  S   </first_frame>
            <second_frame>  E  K  N  L  N  T  A  F  L  L  L  L  L  T  R  N  L  R  H  L  D  L  Y  *  D  H  L  C  T  K  N  S  K  E  G  F  N  S  S  *  V  S  V  R  S  C  L  *  L  Q  N  I  F  N  F  F  P  S  N  P  K  K  V  L  G  V  N  F  E  D  L  F  R  T  K  T  K  C  *  L  K  L  V  S  H  V  *  L  V  R  N  M  K  S  F  V  T  S  L  A  V  F  H  N  *  K  *  K  V  L  V  L  L  V  E  D  L  K  D  C  Y  Y  L  E  Y  L  E  M  T  F  K  H  G  Q  S  R  *  S  S  L  Y  W  F  N  H  </second_frame>
            <third_frame>   K  R  T  S  T  Q  H  S  F  F  F  F  L  R  G  I  *  D  I  L  T  C  I  R  I  I  Y  A  L  K  T  Q  K  K  D  S  I  H  L  K  F  L  *  G  A  V  C  S  F  K  I  S  L  I  S  F  L  P  I  R  K  K  Y  L  V  L  I  L  K  I  Y  L  E  Q  K  Q  N  A  D  *  S  W  C  L  T  Y  D  W  S  E  I  *  K  V  L  *  Q  A  *  P  F  F  I  I  K  S  E  R  S  *  F  C  L  L  R  T  *  R  T  V  I  I  S  N  I  W  K  *  L  S  N  M  V  K  V  D  K  A  A  S  I  G  L  I  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0077G20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="41273" PGL_stop="34724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41273" e_stop="41128"/>
            <exon e_start="40012" e_stop="39520"/>
            <exon e_start="39201" e_stop="39058"/>
            <exon e_start="38246" e_stop="38006"/>
            <exon e_start="36966" e_stop="36466"/>
            <exon e_start="35499" e_stop="34724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.806" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41273" e_stop="41128" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.806">
            <gDNA_intron_boundary i_start="41127" i_stop="40013" i_length="1115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40012" e_stop="39520" e_length="493"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39519" i_stop="39202" i_length="318"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39201" e_stop="39058" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="39057" i_stop="38247" i_length="811"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38246" e_stop="38006" e_length="241"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.979">
            <gDNA_intron_boundary i_start="38005" i_stop="36967" i_length="1039"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36966" e_stop="36466" e_length="501"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.973">
            <gDNA_intron_boundary i_start="36465" i_stop="35500" i_length="966"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="35499" e_stop="34724" e_length="776"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41273" stop="41128"/>
              <exon start="40012" stop="39636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41273" stop="41128"/>
              <exon start="40012" stop="39638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41264" stop="41128"/>
              <exon start="40012" stop="39692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41255" stop="41128"/>
              <exon start="40012" stop="39520"/>
              <exon start="39201" stop="39058"/>
              <exon start="38246" stop="38212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41245" stop="41128"/>
              <exon start="40012" stop="39601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41245" stop="41128"/>
              <exon start="40012" stop="39662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41245" stop="41128"/>
              <exon start="40012" stop="39768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41239" stop="41128"/>
              <exon start="40012" stop="39520"/>
              <exon start="39201" stop="39058"/>
              <exon start="38246" stop="38006"/>
              <exon start="36966" stop="36466"/>
              <exon start="35499" stop="34838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41205" stop="41128"/>
              <exon start="40012" stop="39768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40012" stop="39520"/>
              <exon start="39201" stop="39179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40007" stop="39632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39931" stop="39520"/>
              <exon start="39201" stop="39058"/>
              <exon start="38246" stop="38161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39885" stop="39520"/>
              <exon start="39201" stop="39058"/>
              <exon start="38246" stop="38053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39838" stop="39520"/>
              <exon start="39201" stop="39058"/>
              <exon start="38246" stop="38193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38030" stop="38006"/>
              <exon start="36966" stop="36466"/>
              <exon start="35499" stop="35278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38029" stop="38006"/>
              <exon start="36966" stop="36526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36958" stop="36466"/>
              <exon start="35499" stop="35334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36947" stop="36600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36900" stop="36466"/>
              <exon start="35499" stop="35397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36872" stop="36466"/>
              <exon start="35499" stop="35125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36870" stop="36466"/>
              <exon start="35499" stop="35043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36672" stop="36466"/>
              <exon start="35499" stop="34839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36516" stop="36466"/>
              <exon start="35499" stop="34812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418642" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36504" stop="36466"/>
              <exon start="35499" stop="34724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35336" stop="34772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350539" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACACTCTCCAATACCTGCAGTGAAGAGAAAAATATAATACTCTTAACACTGGGGCCTCTCATGGCGTAGCGTGGGTTTGACTATGTTTGCAGCCTTTTGTTTTCCTTTCCCAATTTCATATCGAGTTTAGGCTGCTTGTGTGAG : AAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAG : GGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAG : GTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAG : AGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG : TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGTATATTTATGCTGGATATGTTAAGAAACCAAGTGTTTATATATATATATATATGTATTGCAA</gDNA_template>
            <first_frame> S  H  S  P  I  P  A  V  K  R  K  I  *  Y  S  *  H  W  G  L  S  W  R  S  V  G  L  T  M  F  A  A  F  C  F  P  F  P  I  S  Y  R  V  *  A  A  C  V  R :   N  M  D  R  A  R  L  N  K  R  T  H  C  S  G  S  T  P  S  E  E  S  A  L  D  L  E  K  Y  C  C  S  Y  S  N  L  P  S  L  S  P  P  T  L  Q  P  Y  A  S  A  G  Q  H  S  E  S  N  A  A  Y  F  S  W  P  S  R  L  N  D  A  A  E  E  R  A  N  Y  F  G  N  L  Q  K  G  V  L  P  E  T  L  G  R  L  P  E  G  Q  R  A  T  T  L  L  D  L  M  T  I  R  A  S  H  S  K  L  L  R  C  Y  S  L  G  T  A  I  G  F  R  I  R  R  G  V  L  T  D  I  P  A  I  L  V  F  V  S  R  K  V  H  K  Q  W  L  S  P  I  Q  C  L  P  T  A  L  E  :  G  P  G  G  V  W  C  E  V  D  V  V  E  F  S  Y  F  G  A  P  E  P  T  P  K  E  Q  L  Y  T  E  I  V  D  D  L  R  G  S  D  P  Y  I  G  S  G  S  Q  :  V  A  S  Q  E  T  Y  G  T  L  G  A  I  V  R  S  L  S  G  N  R  Q  V  G  F  L  T  N  R  H  V  A  V  D  L  D  Y  P  N  Q  K  M  F  H  P  L  P  P  T  L  G  P  G  V  Y  L  G  S  V  E  R  A  T  S  F  I  R  D  D  L  W  Y  G  I  F  A  G  I  N  P   : E  T  F  V  R  A  D  G  A  F  I  P  F  T  D  D  F  D  M  T  S  V  T  T  S  V  K  G  I  G  E  I  G  D  V  K  I  I  D  L  Q  S  P  I  S  S  L  I  G  K  Q  V  T  K  V  G  R  S  S  G  L  T  T  G  T  V  L  A  Y  A  L  E  Y  N  D  E  K  G  I  C  F  L  T  D  F  L  V  N  G  E  N  Q  Q  T  F  D  L  E  G  D  S  G  S  L  I  V  L  K  G  E  N  G  E  K  P  R  P  I  G  I  I  W  G  G  T  A  N  R  G  R  L  K  L  K  V  G  Q  S  P  E  N  W  T  S  G  V  D  L  G  R  L  L  N  F  L  E  L  D  I  I  T  K  D  E  A  L  K   : V  A  V  Q  E  Q  R  A  A  S  A  T  M  V  G  S  T  A  G  D  S  S  P  P  D  I  M  L  P  K  D  K  I  E  P  L  G  L  H  I  Q  Q  I  P  L  E  D  G  I  G  G  P  D  I  N  S  S  P  V  E  A  T  F  N  L  E  E  S  G  I  N  F  D  A  S  V  E  H  Q  F  I  P  S  F  N  G  Q  P  P  A  N  Q  D  D  H  R  D  K  S  A  Y  E  N  L  S  A  L  R  K  G  S  D  E  D  I  S  F  S  L  Q  L  G  G  H  E  S  K  R  R  R  S  E  P  P  P  S  A  D  E  P  E  *  F  S  P  F  I  C  W  Y  I  *  L  *  G  L  P  W  K  G  N  A  F  C  V  W  F  *  N  K  K  E  V  Q  F  G  F  *  G  A  K  F  S  S  Y  G  H  *  W  Q  P  V  Y  E  E  F  C  I  *  T  S  Q  *  C  K  I  Q  L  *  N  T  C  K  L  K  M  R  L  L  S  *  A  I  L  I  H  G  S  M  Q  *  T  *  K  F  A  F  D  V  Y  L  C  W  I  C  *  E  T  K  C  L  Y  I  Y  I  Y  V  L  Q </first_frame>
            <second_frame>  H  T  L  Q  Y  L  Q  *  R  E  K  Y  N  T  L  N  T  G  A  S  H  G  V  A  W  V  *  L  C  L  Q  P  F  V  F  L  S  Q  F  H  I  E  F  R  L  L  V  *   : E  I  W  I  E  Q  G  *  I  K  E  P  I  A  Q  V  Q  H  R  Q  R  S  Q  P  *  I  L  K  N  T  V  A  V  I  L  I  F  L  H  L  V  H  Q  H  F  N  L  M  H  R  L  D  N  T  L  R  V  M  L  H  T  S  P  G  L  V  G  *  M  M  L  L  K  R  E  Q  T  I  S  E  I  F  R  K  G  F  C  Q  K  L  L  A  D  C  P  R  G  S  E  Q  Q  P  Y  L  T  S  *  L  *  G  H  L  I  A  N  S  C  V  A  T  V  S  V  Q  Q  L  V  F  V  F  D  V  V  F  *  L  I  Y  Q  Q  Y  *  C  L  Y  P  G  K  F  T  N  N  G  L  V  Q  S  S  V  Y  L  L  L  *  R :   A  L  E  V  C  G  V  K  W  M  W  S  S  S  P  I  L  V  H  Q  S  Q  H  P  R  S  S  C  T  Q  R  *  S  M  T  C  G  V  V  T  H  I  L  V  Q  D  L  R :   *  Q  A  R  R  H  M  E  P  W  A  L  L  *  G  V  C  Q  A  I  D  K  L  V  S  *  Q  T  G  M  L  L  L  T  *  I  T  Q  I  K  K  C  F  I  L  Y  L  Q  H  *  D  L  E  Y  I  W  V  Q  W  R  E  L  H  L  L  S  E  T  T  F  G  M  A  Y  L  L  A  *  I  Q  :  R  H  L  S  G  Q  M  V  H  S  F  L  S  Q  M  I  L  I  *  P  L  L  L  L  L  L  R  A  *  G  K  L  E  M  S  K  L  *  I  C  N  L  L  L  V  V  S  S  E  S  K  *  R  R  S  E  E  A  L  D  *  L  Q  A  L  S  W  H  M  P  L  N  I  M  M  R  K  G  F  A  S  *  L  I  F  L  S  M  E  K  T  S  R  L  L  T  L  K  E  T  V  E  V  *  S  F  *  R  V  R  M  G  K  N  P  D  Q  L  V  L  F  G  V  E  L  Q  I  G  D  G  L  N  *  R  W  D  N  L  Q  K  I  G  L  V  E  L  T  L  G  V  C  S  I  S  L  N  L  I  S  L  P  K  M  K  L  *  K  :  L  Q  C  K  N  R  E  L  P  L  P  Q  W  W  A  L  R  L  G  I  L  H  L  L  I  *  C  F  Q  R  T  K  *  S  L  L  G  F  T  F  N  K  F  P  W  K  M  A  L  V  A  L  I  *  T  L  H  L  W  K  L  H  L  T  W  K  K  V  G  S  T  L  M  Q  V  L  N  I  N  S  F  Q  A  S  M  G  N  L  R  L  I  K  T  T  I  V  I  S  Q  H  T  R  I  S  Q  L  L  G  K  A  L  M  K  T  S  A  F  P  C  S  W  V  V  M  N  P  R  E  D  V  Q  S  L  H  Q  A  Q  M  N  Q  N  D  F  L  L  L  S  A  G  T  F  N  F  E  V  F  H  G  K  E  M  H  F  V  F  G  S  K  T  R  K  R  S  N  L  V  F  E  V  L  N  F  H  H  M  A  I  D  G  N  L  C  M  K  S  S  V  F  E  H  L  S  S  A  K  S  N  C  K  I  H  A  S  *  K  *  G  C  F  L  E  L  F  *  F  M  A  P  C  S  R  H  K  N  L  P  L  M  Y  I  Y  A  G  Y  V  K  K  P  S  V  Y  I  Y  I  Y  M  Y  C   </second_frame>
            <third_frame>   T  L  S  N  T  C  S  E  E  K  N  I  I  L  L  T  L  G  P  L  M  A  *  R  G  F  D  Y  V  C  S  L  L  F  S  F  P  N  F  I  S  S  L  G  C  L  C  E  :  K  Y  G  S  S  K  V  K  *  K  N  P  L  L  R  F  N  T  V  R  G  V  S  L  R  S  *  K  I  L  L  Q  L  F  *  S  S  F  T  *  S  T  N  T  S  T  L  C  I  G  W  T  T  L  *  E  *  C  C  I  L  L  L  A  *  S  A  K  *  C  C  *  R  E  S  K  L  F  R  K  S  S  E  R  G  F  A  R  N  S  W  P  I  A  R  G  A  A  S  N  N  L  T  *  P  H  D  Y  K  G  I  S  *  Q  T  L  A  L  L  Q  S  R  Y  S  N  W  F  S  Y  S  T  W  C  F  D  *  Y  T  S  N  T  S  V  C  I  P  E  S  S  Q  T  M  A  *  S  N  P  V  S  T  Y  C  F  R   : G  P  W  R  C  V  V  *  S  G  C  G  R  V  L  L  F  W  C  T  R  A  N  T  Q  G  A  V  V  H  R  D  S  R  *  P  A  G  *  *  P  I  Y  W  F  R  I  S   : G  S  K  P  G  D  I  W  N  L  G  R  Y  C  E  E  S  V  R  Q  S  T  S  W  F  P  N  K  P  A  C  C  C  *  L  R  L  P  K  S  K  N  V  S  S  F  T  S  N  I  R  T  W  S  I  S  G  F  S  G  E  S  Y  I  F  Y  Q  R  R  P  L  V  W  H  I  C  W  H  K  S  R :   D  I  C  Q  G  R  W  C  I  H  S  F  H  R  *  F  *  Y  D  L  C  Y  Y  F  C  *  G  H  R  G  N  W  R  C  Q  N  Y  R  F  A  I  S  Y  *  *  S  H  R  K  A  S  D  E  G  R  K  K  L  W  I  D  Y  R  H  C  L  G  I  C  P  *  I  *  *  *  E  R  D  L  L  L  D  *  F  S  C  Q  W  R  K  P  A  D  F  *  P  *  R  R  Q  W  K  F  N  R  F  E  G  *  E  W  G  K  T  P  T  N  W  Y  Y  L  G  W  N  C  K  *  G  T  A  *  T  K  G  G  T  I  S  R  K  L  D  *  W  S  *  P  W  A  S  A  Q  F  P  *  T  *  Y  H  Y  Q  R  *  S  S  K  S :   C  S  A  R  T  E  S  C  L  C  H  N  G  G  L  Y  G  W  G  F  F  T  S  *  Y  N  A  S  K  G  Q  N  R  A  S  W  A  S  H  S  T  N  S  L  G  R  W  H  W  W  P  *  Y  K  L  F  T  C  G  S  Y  I  *  L  G  R  K  W  D  Q  L  *  C  K  C  *  T  S  I  H  S  K  L  Q  W  A  T  S  G  *  S  R  R  P  S  *  *  V  S  I  R  E  S  L  S  S  *  E  R  L  *  *  R  H  Q  L  F  L  A  V  G  W  S  *  I  Q  E  K  T  F  R  A  S  T  K  R  R  *  T  R  M  I  F  S  F  Y  L  L  V  H  L  T  L  R  S  S  M  E  R  K  C  I  L  C  L  V  L  K  Q  E  R  G  P  I  W  F  L  R  C  *  I  F  I  I  W  P  L  M  A  T  C  V  *  R  V  L  Y  L  N  I  S  V  V  Q  N  P  I  V  K  Y  M  Q  A  K  N  E  A  A  F  L  S  Y  F  D  S  W  L  H  A  V  D  I  K  I  C  L  *  C  I  F  M  L  D  M  L  R  N  Q  V  F  I  Y  I  Y  I  C  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41141" stop="41128"/>
                    <exon start="40012" stop="39520"/>
                    <exon start="39201" stop="39058"/>
                    <exon start="38246" stop="38006"/>
                    <exon start="36966" stop="36466"/>
                    <exon start="35499" stop="35075"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1815</number_coding_nucleotides>
                  <number_encoded_amino_acids>605</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AACVRNMDRARLNKRTHCSGSTPSEESALDLEKYCCSYSNLPSLSPPTLQPYASAGQHSESNAAYFSWPSRLNDAAEERANYFGNLQKGVLPETLGRLPEGQRATTLLDLMTIRASHSKLLRCYSLGTAIGFRIRRGVLTDIPAILVFVSRKVHKQWLSPIQCLPTALEGPGGVWCEVDVVEFSYFGAPEPTPKEQLYTEIVDDLRGSDPYIGSGSQVASQETYGTLGAIVRSLSGNRQVGFLTNRHVAVDLDYPNQKMFHPLPPTLGPGVYLGSVERATSFIRDDLWYGIFAGINPETFVRADGAFIPFTDDFDMTSVTTSVKGIGEIGDVKIIDLQSPISSLIGKQVTKVGRSSGLTTGTVLAYALEYNDEKGICFLTDFLVNGENQQTFDLEGDSGSLIVLKGENGEKPRPIGIIWGGTANRGRLKLKVGQSPENWTSGVDLGRLLNFLELDIITKDEALKVAVQEQRAASATMVGSTAGDSSPPDIMLPKDKIEPLGLHIQQIPLEDGIGGPDINSSPVEATFNLEESGINFDASVEHQFIPSFNGQPPANQDDHRDKSAYENLSALRKGSDEDISFSLQLGGHESKRRRSEPPPSADEPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39202" e_stop="39058"/>
            <exon e_start="38246" e_stop="38006"/>
            <exon e_start="36966" e_stop="36466"/>
            <exon e_start="35499" e_stop="34724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="0.986"/>
          <exon-intron don_prob="0.990" acc_prob="0.979" e_score="0.983"/>
          <exon-intron don_prob="0.982" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="39202" e_stop="39058" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="39057" i_stop="38247" i_length="811"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="38246" e_stop="38006" e_length="241"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.979">
            <gDNA_intron_boundary i_start="38005" i_stop="36967" i_length="1039"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36966" e_stop="36466" e_length="501"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.973">
            <gDNA_intron_boundary i_start="36465" i_stop="35500" i_length="966"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="35499" e_stop="34724" e_length="776"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39202" stop="39058"/>
              <exon start="38246" stop="38006"/>
              <exon start="36966" stop="36714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39202" stop="39058"/>
              <exon start="38246" stop="38006"/>
              <exon start="36966" stop="36895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38030" stop="38006"/>
              <exon start="36966" stop="36466"/>
              <exon start="35499" stop="35278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38029" stop="38006"/>
              <exon start="36966" stop="36526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36958" stop="36466"/>
              <exon start="35499" stop="35334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36947" stop="36600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36900" stop="36466"/>
              <exon start="35499" stop="35397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36872" stop="36466"/>
              <exon start="35499" stop="35125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36870" stop="36466"/>
              <exon start="35499" stop="35043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36672" stop="36466"/>
              <exon start="35499" stop="34839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36516" stop="36466"/>
              <exon start="35499" stop="34812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418642" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36504" stop="36466"/>
              <exon start="35499" stop="34724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35336" stop="34772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350539" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAG : GTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTTTATCAGAGACGACCTTTGGTATGGCATATTTGCTGGCATAAATCCAG : AGACATTTGTCAGGGCAGATGGTGCATTCATTCCTTTCACAGATGATTTTGATATGACCTCTGTTACTACTTCTGTTAAGGGCATAGGGGAAATTGGAGATGTCAAAATTATAGATTTGCAATCTCCTATTAGTAGTCTCATCGGAAAGCAAGTGACGAAGGTCGGAAGAAGCTCTGGATTGACTACAGGCACTGTCTTGGCATATGCCCTTGAATATAATGATGAGAAAGGGATTTGCTTCTTGACTGATTTTCTTGTCAATGGAGAAAACCAGCAGACTTTTGACCTTGAAGGAGACAGTGGAAGTTTAATCGTTTTGAAGGGTGAGAATGGGGAAAAACCCCGACCAATTGGTATTATTTGGGGTGGAACTGCAAATAGGGGACGGCTTAAACTAAAGGTGGGACAATCTCCAGAAAATTGGACTAGTGGAGTTGACCTTGGGCGTCTGCTCAATTTCCTTGAACTTGATATCATTACCAAAGATGAAGCTCTAAAAG : TTGCAGTGCAAGAACAGAGAGCTGCCTCTGCCACAATGGTGGGCTCTACGGCTGGGGATTCTTCACCTCCTGATATAATGCTTCCAAAGGACAAAATAGAGCCTCTTGGGCTTCACATTCAACAAATTCCCTTGGAAGATGGCATTGGTGGCCCTGATATAAACTCTTCACCTGTGGAAGCTACATTTAACTTGGAAGAAAGTGGGATCAACTTTGATGCAAGTGTTGAACATCAATTCATTCCAAGCTTCAATGGGCAACCTCCGGCTAATCAAGACGACCATCGTGATAAGTCAGCATACGAGAATCTCTCAGCTCTTAGGAAAGGCTCTGATGAAGACATCAGCTTTTCCTTGCAGTTGGGTGGTCATGAATCCAAGAGAAGACGTTCAGAGCCTCCACCAAGCGCAGATGAACCAGAATGATTTTCTCCTTTTATCTGCTGGTACATTTAACTTTGAGGTCTTCCATGGAAAGGAAATGCATTTTGTGTTTGGTTCTAAAACAAGAAAGAGGTCCAATTTGGTTTTTGAGGTGCTAAATTTTCATCATATGGCCATTGATGGCAACCTGTGTATGAAGAGTTCTGTATTTGAACATCTCAGTAGTGCAAAATCCAATTGTAAAATACATGCAAGCTAAAAATGAGGCTGCTTTCTTGAGCTATTTTGATTCATGGCTCCATGCAGTAGACATAAAAATTTGCCTTTGATGTATATTTATGCTGGATATGTTAAGAAACCAAGTGTTTATATATATATATATATGTATTGCAA</gDNA_template>
            <first_frame> G  P  W  R  C  V  V  *  S  G  C  G  R  V  L  L  F  W  C  T  R  A  N  T  Q  G  A  V  V  H  R  D  S  R  *  P  A  G  *  *  P  I  Y  W  F  R  I  S   : G  S  K  P  G  D  I  W  N  L  G  R  Y  C  E  E  S  V  R  Q  S  T  S  W  F  P  N  K  P  A  C  C  C  *  L  R  L  P  K  S  K  N  V  S  S  F  T  S  N  I  R  T  W  S  I  S  G  F  S  G  E  S  Y  I  F  Y  Q  R  R  P  L  V  W  H  I  C  W  H  K  S  R :   D  I  C  Q  G  R  W  C  I  H  S  F  H  R  *  F  *  Y  D  L  C  Y  Y  F  C  *  G  H  R  G  N  W  R  C  Q  N  Y  R  F  A  I  S  Y  *  *  S  H  R  K  A  S  D  E  G  R  K  K  L  W  I  D  Y  R  H  C  L  G  I  C  P  *  I  *  *  *  E  R  D  L  L  L  D  *  F  S  C  Q  W  R  K  P  A  D  F  *  P  *  R  R  Q  W  K  F  N  R  F  E  G  *  E  W  G  K  T  P  T  N  W  Y  Y  L  G  W  N  C  K  *  G  T  A  *  T  K  G  G  T  I  S  R  K  L  D  *  W  S  *  P  W  A  S  A  Q  F  P  *  T  *  Y  H  Y  Q  R  *  S  S  K  S :   C  S  A  R  T  E  S  C  L  C  H  N  G  G  L  Y  G  W  G  F  F  T  S  *  Y  N  A  S  K  G  Q  N  R  A  S  W  A  S  H  S  T  N  S  L  G  R  W  H  W  W  P  *  Y  K  L  F  T  C  G  S  Y  I  *  L  G  R  K  W  D  Q  L  *  C  K  C  *  T  S  I  H  S  K  L  Q  W  A  T  S  G  *  S  R  R  P  S  *  *  V  S  I  R  E  S  L  S  S  *  E  R  L  *  *  R  H  Q  L  F  L  A  V  G  W  S  *  I  Q  E  K  T  F  R  A  S  T  K  R  R  *  T  R  M  I  F  S  F  Y  L  L  V  H  L  T  L  R  S  S  M  E  R  K  C  I  L  C  L  V  L  K  Q  E  R  G  P  I  W  F  L  R  C  *  I  F  I  I  W  P  L  M  A  T  C  V  *  R  V  L  Y  L  N  I  S  V  V  Q  N  P  I  V  K  Y  M  Q  A  K  N  E  A  A  F  L  S  Y  F  D  S  W  L  H  A  V  D  I  K  I  C  L  *  C  I  F  M  L  D  M  L  R  N  Q  V  F  I  Y  I  Y  I  C  I  A  </first_frame>
            <second_frame>  G  P  G  G  V  W  C  E  V  D  V  V  E  F  S  Y  F  G  A  P  E  P  T  P  K  E  Q  L  Y  T  E  I  V  D  D  L  R  G  S  D  P  Y  I  G  S  G  S  Q  :  V  A  S  Q  E  T  Y  G  T  L  G  A  I  V  R  S  L  S  G  N  R  Q  V  G  F  L  T  N  R  H  V  A  V  D  L  D  Y  P  N  Q  K  M  F  H  P  L  P  P  T  L  G  P  G  V  Y  L  G  S  V  E  R  A  T  S  F  I  R  D  D  L  W  Y  G  I  F  A  G  I  N  P   : E  T  F  V  R  A  D  G  A  F  I  P  F  T  D  D  F  D  M  T  S  V  T  T  S  V  K  G  I  G  E  I  G  D  V  K  I  I  D  L  Q  S  P  I  S  S  L  I  G  K  Q  V  T  K  V  G  R  S  S  G  L  T  T  G  T  V  L  A  Y  A  L  E  Y  N  D  E  K  G  I  C  F  L  T  D  F  L  V  N  G  E  N  Q  Q  T  F  D  L  E  G  D  S  G  S  L  I  V  L  K  G  E  N  G  E  K  P  R  P  I  G  I  I  W  G  G  T  A  N  R  G  R  L  K  L  K  V  G  Q  S  P  E  N  W  T  S  G  V  D  L  G  R  L  L  N  F  L  E  L  D  I  I  T  K  D  E  A  L  K   : V  A  V  Q  E  Q  R  A  A  S  A  T  M  V  G  S  T  A  G  D  S  S  P  P  D  I  M  L  P  K  D  K  I  E  P  L  G  L  H  I  Q  Q  I  P  L  E  D  G  I  G  G  P  D  I  N  S  S  P  V  E  A  T  F  N  L  E  E  S  G  I  N  F  D  A  S  V  E  H  Q  F  I  P  S  F  N  G  Q  P  P  A  N  Q  D  D  H  R  D  K  S  A  Y  E  N  L  S  A  L  R  K  G  S  D  E  D  I  S  F  S  L  Q  L  G  G  H  E  S  K  R  R  R  S  E  P  P  P  S  A  D  E  P  E  *  F  S  P  F  I  C  W  Y  I  *  L  *  G  L  P  W  K  G  N  A  F  C  V  W  F  *  N  K  K  E  V  Q  F  G  F  *  G  A  K  F  S  S  Y  G  H  *  W  Q  P  V  Y  E  E  F  C  I  *  T  S  Q  *  C  K  I  Q  L  *  N  T  C  K  L  K  M  R  L  L  S  *  A  I  L  I  H  G  S  M  Q  *  T  *  K  F  A  F  D  V  Y  L  C  W  I  C  *  E  T  K  C  L  Y  I  Y  I  Y  V  L  Q </second_frame>
            <third_frame>   A  L  E  V  C  G  V  K  W  M  W  S  S  S  P  I  L  V  H  Q  S  Q  H  P  R  S  S  C  T  Q  R  *  S  M  T  C  G  V  V  T  H  I  L  V  Q  D  L  R :   *  Q  A  R  R  H  M  E  P  W  A  L  L  *  G  V  C  Q  A  I  D  K  L  V  S  *  Q  T  G  M  L  L  L  T  *  I  T  Q  I  K  K  C  F  I  L  Y  L  Q  H  *  D  L  E  Y  I  W  V  Q  W  R  E  L  H  L  L  S  E  T  T  F  G  M  A  Y  L  L  A  *  I  Q  :  R  H  L  S  G  Q  M  V  H  S  F  L  S  Q  M  I  L  I  *  P  L  L  L  L  L  L  R  A  *  G  K  L  E  M  S  K  L  *  I  C  N  L  L  L  V  V  S  S  E  S  K  *  R  R  S  E  E  A  L  D  *  L  Q  A  L  S  W  H  M  P  L  N  I  M  M  R  K  G  F  A  S  *  L  I  F  L  S  M  E  K  T  S  R  L  L  T  L  K  E  T  V  E  V  *  S  F  *  R  V  R  M  G  K  N  P  D  Q  L  V  L  F  G  V  E  L  Q  I  G  D  G  L  N  *  R  W  D  N  L  Q  K  I  G  L  V  E  L  T  L  G  V  C  S  I  S  L  N  L  I  S  L  P  K  M  K  L  *  K  :  L  Q  C  K  N  R  E  L  P  L  P  Q  W  W  A  L  R  L  G  I  L  H  L  L  I  *  C  F  Q  R  T  K  *  S  L  L  G  F  T  F  N  K  F  P  W  K  M  A  L  V  A  L  I  *  T  L  H  L  W  K  L  H  L  T  W  K  K  V  G  S  T  L  M  Q  V  L  N  I  N  S  F  Q  A  S  M  G  N  L  R  L  I  K  T  T  I  V  I  S  Q  H  T  R  I  S  Q  L  L  G  K  A  L  M  K  T  S  A  F  P  C  S  W  V  V  M  N  P  R  E  D  V  Q  S  L  H  Q  A  Q  M  N  Q  N  D  F  L  L  L  S  A  G  T  F  N  F  E  V  F  H  G  K  E  M  H  F  V  F  G  S  K  T  R  K  R  S  N  L  V  F  E  V  L  N  F  H  H  M  A  I  D  G  N  L  C  M  K  S  S  V  F  E  H  L  S  S  A  K  S  N  C  K  I  H  A  S  *  K  *  G  C  F  L  E  L  F  *  F  M  A  P  C  S  R  H  K  N  L  P  L  M  Y  I  Y  A  G  Y  V  K  K  P  S  V  Y  I  Y  I  Y  M  Y  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39201" stop="39058"/>
                    <exon start="38246" stop="38006"/>
                    <exon start="36966" stop="36466"/>
                    <exon start="35499" stop="35075"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1308</number_coding_nucleotides>
                  <number_encoded_amino_acids>436</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPGGVWCEVDVVEFSYFGAPEPTPKEQLYTEIVDDLRGSDPYIGSGSQVASQETYGTLGAIVRSLSGNRQVGFLTNRHVAVDLDYPNQKMFHPLPPTLGPGVYLGSVERATSFIRDDLWYGIFAGINPETFVRADGAFIPFTDDFDMTSVTTSVKGIGEIGDVKIIDLQSPISSLIGKQVTKVGRSSGLTTGTVLAYALEYNDEKGICFLTDFLVNGENQQTFDLEGDSGSLIVLKGENGEKPRPIGIIWGGTANRGRLKLKVGQSPENWTSGVDLGRLLNFLELDIITKDEALKVAVQEQRAASATMVGSTAGDSSPPDIMLPKDKIEPLGLHIQQIPLEDGIGGPDINSSPVEATFNLEESGINFDASVEHQFIPSFNGQPPANQDDHRDKSAYENLSALRKGSDEDISFSLQLGGHESKRRRSEPPPSADEPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="40013" e_stop="39520"/>
            <exon e_start="39201" e_stop="39058"/>
            <exon e_start="38246" e_stop="38053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.926" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40013" e_stop="39520" e_length="494"/>
          </exon>
          <intron i_serial="1" don_prob="0.926" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39519" i_stop="39202" i_length="318"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39201" e_stop="39058" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="39057" i_stop="38247" i_length="811"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="38246" e_stop="38053" e_length="194"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40013" stop="39655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40012" stop="39520"/>
              <exon start="39201" stop="39179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40007" stop="39632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39931" stop="39520"/>
              <exon start="39201" stop="39058"/>
              <exon start="38246" stop="38161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39885" stop="39520"/>
              <exon start="39201" stop="39058"/>
              <exon start="38246" stop="38053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39838" stop="39520"/>
              <exon start="39201" stop="39058"/>
              <exon start="38246" stop="38193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271798" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATATGGATCGAGCAAGGTTAAATAAAAGAACCCATTGCTCAGGTTCAACACCGTCAGAGGAGTCAGCCTTAGATCTTGAAAAATACTGTTGCAGTTATTCTAATCTTCCTTCACTTAGTCCACCAACACTTCAACCTTATGCATCGGCTGGACAACACTCTGAGAGTAATGCTGCATACTTCTCCTGGCCTAGTCGGCTAAATGATGCTGCTGAAGAGAGAGCAAACTATTTCGGAAATCTTCAGAAAGGGGTTTTGCCAGAAACTCTTGGCCGATTGCCCGAGGGGCAGCGAGCAACAACCTTACTTGACCTCATGACTATAAGGGCATCTCATAGCAAACTCTTGCGTTGCTACAGTCTCGGTACAGCAATTGGTTTTCGTATTCGACGTGGTGTTTTGACTGATATACCAGCAATACTAGTGTTTGTATCCCGGAAAGTTCACAAACAATGGCTTAGTCCAATCCAGTGTCTACCTACTGCTTTAGAG : GGCCCTGGAGGTGTGTGGTGTGAAGTGGATGTGGTCGAGTTCTCCTATTTTGGTGCACCAGAGCCAACACCCAAGGAGCAGTTGTACACAGAGATAGTCGATGACCTGCGGGGTAGTGACCCATATATTGGTTCAGGATCTCAG : GTAGCAAGCCAGGAGACATATGGAACCTTGGGCGCTATTGTGAGGAGTCTGTCAGGCAATCGACAAGTTGGTTTCCTAACAAACCGGCATGTTGCTGTTGACTTAGATTACCCAAATCAAAAAATGTTTCATCCTTTACCTCCAACATTAGGACCTGGAGTATATCTGGGTTCAGTGGAGAGAGCTACATCTTT</gDNA_template>
            <first_frame> E  I  W  I  E  Q  G  *  I  K  E  P  I  A  Q  V  Q  H  R  Q  R  S  Q  P  *  I  L  K  N  T  V  A  V  I  L  I  F  L  H  L  V  H  Q  H  F  N  L  M  H  R  L  D  N  T  L  R  V  M  L  H  T  S  P  G  L  V  G  *  M  M  L  L  K  R  E  Q  T  I  S  E  I  F  R  K  G  F  C  Q  K  L  L  A  D  C  P  R  G  S  E  Q  Q  P  Y  L  T  S  *  L  *  G  H  L  I  A  N  S  C  V  A  T  V  S  V  Q  Q  L  V  F  V  F  D  V  V  F  *  L  I  Y  Q  Q  Y  *  C  L  Y  P  G  K  F  T  N  N  G  L  V  Q  S  S  V  Y  L  L  L  *  R :   A  L  E  V  C  G  V  K  W  M  W  S  S  S  P  I  L  V  H  Q  S  Q  H  P  R  S  S  C  T  Q  R  *  S  M  T  C  G  V  V  T  H  I  L  V  Q  D  L  R :   *  Q  A  R  R  H  M  E  P  W  A  L  L  *  G  V  C  Q  A  I  D  K  L  V  S  *  Q  T  G  M  L  L  L  T  *  I  T  Q  I  K  K  C  F  I  L  Y  L  Q  H  *  D  L  E  Y  I  W  V  Q  W  R  E  L  H  L  </first_frame>
            <second_frame>  K  Y  G  S  S  K  V  K  *  K  N  P  L  L  R  F  N  T  V  R  G  V  S  L  R  S  *  K  I  L  L  Q  L  F  *  S  S  F  T  *  S  T  N  T  S  T  L  C  I  G  W  T  T  L  *  E  *  C  C  I  L  L  L  A  *  S  A  K  *  C  C  *  R  E  S  K  L  F  R  K  S  S  E  R  G  F  A  R  N  S  W  P  I  A  R  G  A  A  S  N  N  L  T  *  P  H  D  Y  K  G  I  S  *  Q  T  L  A  L  L  Q  S  R  Y  S  N  W  F  S  Y  S  T  W  C  F  D  *  Y  T  S  N  T  S  V  C  I  P  E  S  S  Q  T  M  A  *  S  N  P  V  S  T  Y  C  F  R   : G  P  W  R  C  V  V  *  S  G  C  G  R  V  L  L  F  W  C  T  R  A  N  T  Q  G  A  V  V  H  R  D  S  R  *  P  A  G  *  *  P  I  Y  W  F  R  I  S   : G  S  K  P  G  D  I  W  N  L  G  R  Y  C  E  E  S  V  R  Q  S  T  S  W  F  P  N  K  P  A  C  C  C  *  L  R  L  P  K  S  K  N  V  S  S  F  T  S  N  I  R  T  W  S  I  S  G  F  S  G  E  S  Y  I  F </second_frame>
            <third_frame>   N  M  D  R  A  R  L  N  K  R  T  H  C  S  G  S  T  P  S  E  E  S  A  L  D  L  E  K  Y  C  C  S  Y  S  N  L  P  S  L  S  P  P  T  L  Q  P  Y  A  S  A  G  Q  H  S  E  S  N  A  A  Y  F  S  W  P  S  R  L  N  D  A  A  E  E  R  A  N  Y  F  G  N  L  Q  K  G  V  L  P  E  T  L  G  R  L  P  E  G  Q  R  A  T  T  L  L  D  L  M  T  I  R  A  S  H  S  K  L  L  R  C  Y  S  L  G  T  A  I  G  F  R  I  R  R  G  V  L  T  D  I  P  A  I  L  V  F  V  S  R  K  V  H  K  Q  W  L  S  P  I  Q  C  L  P  T  A  L  E  :  G  P  G  G  V  W  C  E  V  D  V  V  E  F  S  Y  F  G  A  P  E  P  T  P  K  E  Q  L  Y  T  E  I  V  D  D  L  R  G  S  D  P  Y  I  G  S  G  S  Q  :  V  A  S  Q  E  T  Y  G  T  L  G  A  I  V  R  S  L  S  G  N  R  Q  V  G  F  L  T  N  R  H  V  A  V  D  L  D  Y  P  N  Q  K  M  F  H  P  L  P  P  T  L  G  P  G  V  Y  L  G  S  V  E  R  A  T  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40011" stop="39520"/>
                    <exon start="39201" stop="39058"/>
                    <exon start="38246" stop="38055"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMDRARLNKRTHCSGSTPSEESALDLEKYCCSYSNLPSLSPPTLQPYASAGQHSESNAAYFSWPSRLNDAAEERANYFGNLQKGVLPETLGRLPEGQRATTLLDLMTIRASHSKLLRCYSLGTAIGFRIRRGVLTDIPAILVFVSRKVHKQWLSPIQCLPTALEGPGGVWCEVDVVEFSYFGAPEPTPKEQLYTEIVDDLRGSDPYIGSGSQVASQETYGTLGAIVRSLSGNRQVGFLTNRHVAVDLDYPNQKMFHPLPPTLGPGVYLGSVERATS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="41112" e_stop="40558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="41112" e_stop="40558" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41112" stop="40558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTCCTCTCGAAGAATCCATCACTATTGCGATTGATCTTCCTTTTTTCACTTTCTCTTCTTCATGCAGAGATATCTTCACACGCCCATGTTTTTTTTTTGAATTTTCCAGGACCCCATTAATTTTGTTCCCTCAATTTGTACTGTGCACAATCGTTATCAAAATAAGTGCTTTTTCAATATTACTGTATTTATTATCCGTTTTTCCTCTCAAGTGTTTCTTTTCACTTTTCCTGTTCCTGGTTTTGTTGCTTTTCCTTGGTTATATATGTTTGGCTGAGAACTTTTTGTTTTTATTTCCGTTGTTGGAGAAATAGGATATATTGGACCTCACCTAGTTTGGGATTGAAGCATAGTTATTGACATATTGTTGATTGATTATGGTTGTTGTTGAACTTATTATCTATTTCTGTTGAGAAAGATACCTGTTTTCTTAGGGCCATGTTGATTGTTGAGGCAGTTTTATCATCTTATGAAGTTCATTCTTTCAGATTTTAAAGTAGCTGAGAGAAATGATGTGATGGATAATATTGTTGTAAGCTGTGGCTAACT</gDNA_template>
            <first_frame> F  F  F  L  S  K  N  P  S  L  L  R  L  I  F  L  F  S  L  S  L  L  H  A  E  I  S  S  H  A  H  V  F  F  L  N  F  P  G  P  H  *  F  C  S  L  N  L  Y  C  A  Q  S  L  S  K  *  V  L  F  Q  Y  Y  C  I  Y  Y  P  F  F  L  S  S  V  S  F  H  F  S  C  S  W  F  C  C  F  S  L  V  I  Y  V  W  L  R  T  F  C  F  Y  F  R  C  W  R  N  R  I  Y  W  T  S  P  S  L  G  L  K  H  S  Y  *  H  I  V  D  *  L  W  L  L  L  N  L  L  S  I  S  V  E  K  D  T  C  F  L  R  A  M  L  I  V  E  A  V  L  S  S  Y  E  V  H  S  F  R  F  *  S  S  *  E  K  *  C  D  G  *  Y  C  C  K  L  W  L  T </first_frame>
            <second_frame>  F  F  S  S  R  R  I  H  H  Y  C  D  *  S  S  F  F  H  F  L  F  F  M  Q  R  Y  L  H  T  P  M  F  F  F  *  I  F  Q  D  P  I  N  F  V  P  S  I  C  T  V  H  N  R  Y  Q  N  K  C  F  F  N  I  T  V  F  I  I  R  F  S  S  Q  V  F  L  F  T  F  P  V  P  G  F  V  A  F  P  W  L  Y  M  F  G  *  E  L  F  V  F  I  S  V  V  G  E  I  G  Y  I  G  P  H  L  V  W  D  *  S  I  V  I  D  I  L  L  I  D  Y  G  C  C  *  T  Y  Y  L  F  L  L  R  K  I  P  V  F  L  G  P  C  *  L  L  R  Q  F  Y  H  L  M  K  F  I  L  S  D  F  K  V  A  E  R  N  D  V  M  D  N  I  V  V  S  C  G  *   </second_frame>
            <third_frame>   F  F  P  L  E  E  S  I  T  I  A  I  D  L  P  F  F  T  F  S  S  S  C  R  D  I  F  T  R  P  C  F  F  F  E  F  S  R  T  P  L  I  L  F  P  Q  F  V  L  C  T  I  V  I  K  I  S  A  F  S  I  L  L  Y  L  L  S  V  F  P  L  K  C  F  F  S  L  F  L  F  L  V  L  L  L  F  L  G  Y  I  C  L  A  E  N  F  L  F  L  F  P  L  L  E  K  *  D  I  L  D  L  T  *  F  G  I  E  A  *  L  L  T  Y  C  *  L  I  M  V  V  V  E  L  I  I  Y  F  C  *  E  R  Y  L  F  S  *  G  H  V  D  C  *  G  S  F  I  I  L  *  S  S  F  F  Q  I  L  K  *  L  R  E  M  M  *  W  I  I  L  L  *  A  V  A  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41110" stop="40793"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFPLEESITIAIDLPFFTFSSSCRDIFTRPCFFFEFSRTPLILFPQFVLCTIVIKISAFSILLYLLSVFPLKCFFSLFLFLVLLLFLGYICLAENFLFLFPLLEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="34724" PGL_stop="35416"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34724" e_stop="35416"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="34724" e_stop="35416" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34724" stop="35131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34733" stop="35080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34854" stop="35416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431116" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCAATACATATATATATATATATAAACACTTGGTTTCTTAACATATCCAGCATAAATATACATCAAAGGCAAATTTTTATGTCTACTGCATGGAGCCATGAATCAAAATAGCTCAAGAAAGCAGCCTCATTTTTAGCTTGCATGTATTTTACAATTGGATTTTGCACTACTGAGATGTTCAAATACAGAACTCTTCATACACAGGTTGCCATCAATGGCCATATGATGAAAATTTAGCACCTCAAAAACCAAATTGGACCTCTTTCTTGTTTTAGAACCAAACACAAAATGCATTTCCTTTCCATGGAAGACCTCAAAGTTAAATGTACCAGCAGATAAAAGGAGAAAATCATTCTGGTTCATCTGCGCTTGGTGGAGGCTCTGAACGTCTTCTCTTGGATTCATGACCACCCAACTGCAAGGAAAAGCTGATGTCTTCATCAGAGCCTTTCCTAAGAGCTGAGAGATTCTCGTATGCTGACTTATCACGATGGTCGTCTTGATTAGCCGGAGGTTGCCCATTGAAGCTTGGAATGAATTGATGTTCAACACTTGCATCAAAGTTGATCCCACTTTCTTCCAAGTTAAATGTAGCTTCCACAGGTGAAGAGTTTATATCAGGGCCACCAATGCCATCTTCCAAGGGAATTTGTTGAATGTGAAGCCCAAGAGGCTCTATTTTGTCCTTTGG</gDNA_template>
            <first_frame> L  Q  Y  I  Y  I  Y  I  *  T  L  G  F  L  T  Y  P  A  *  I  Y  I  K  G  K  F  L  C  L  L  H  G  A  M  N  Q  N  S  S  R  K  Q  P  H  F  *  L  A  C  I  L  Q  L  D  F  A  L  L  R  C  S  N  T  E  L  F  I  H  R  L  P  S  M  A  I  *  *  K  F  S  T  S  K  T  K  L  D  L  F  L  V  L  E  P  N  T  K  C  I  S  F  P  W  K  T  S  K  L  N  V  P  A  D  K  R  R  K  S  F  W  F  I  C  A  W  W  R  L  *  T  S  S  L  G  F  M  T  T  Q  L  Q  G  K  A  D  V  F  I  R  A  F  P  K  S  *  E  I  L  V  C  *  L  I  T  M  V  V  L  I  S  R  R  L  P  I  E  A  W  N  E  L  M  F  N  T  C  I  K  V  D  P  T  F  F  Q  V  K  C  S  F  H  R  *  R  V  Y  I  R  A  T  N  A  I  F  Q  G  N  L  L  N  V  K  P  K  R  L  Y  F  V  L  W </first_frame>
            <second_frame>  C  N  T  Y  I  Y  I  Y  K  H  L  V  S  *  H  I  Q  H  K  Y  T  S  K  A  N  F  Y  V  Y  C  M  E  P  *  I  K  I  A  Q  E  S  S  L  I  F  S  L  H  V  F  Y  N  W  I  L  H  Y  *  D  V  Q  I  Q  N  S  S  Y  T  G  C  H  Q  W  P  Y  D  E  N  L  A  P  Q  K  P  N  W  T  S  F  L  F  *  N  Q  T  Q  N  A  F  P  F  H  G  R  P  Q  S  *  M  Y  Q  Q  I  K  G  E  N  H  S  G  S  S  A  L  G  G  G  S  E  R  L  L  L  D  S  *  P  P  N  C  K  E  K  L  M  S  S  S  E  P  F  L  R  A  E  R  F  S  Y  A  D  L  S  R  W  S  S  *  L  A  G  G  C  P  L  K  L  G  M  N  *  C  S  T  L  A  S  K  L  I  P  L  S  S  K  L  N  V  A  S  T  G  E  E  F  I  S  G  P  P  M  P  S  S  K  G  I  C  *  M  *  S  P  R  G  S  I  L  S  F   </second_frame>
            <third_frame>   A  I  H  I  Y  I  Y  I  N  T  W  F  L  N  I  S  S  I  N  I  H  Q  R  Q  I  F  M  S  T  A  W  S  H  E  S  K  *  L  K  K  A  A  S  F  L  A  C  M  Y  F  T  I  G  F  C  T  T  E  M  F  K  Y  R  T  L  H  T  Q  V  A  I  N  G  H  M  M  K  I  *  H  L  K  N  Q  I  G  P  L  S  C  F  R  T  K  H  K  M  H  F  L  S  M  E  D  L  K  V  K  C  T  S  R  *  K  E  K  I  I  L  V  H  L  R  L  V  E  A  L  N  V  F  S  W  I  H  D  H  P  T  A  R  K  S  *  C  L  H  Q  S  L  S  *  E  L  R  D  S  R  M  L  T  Y  H  D  G  R  L  D  *  P  E  V  A  H  *  S  L  E  *  I  D  V  Q  H  L  H  Q  S  *  S  H  F  L  P  S  *  M  *  L  P  Q  V  K  S  L  Y  Q  G  H  Q  C  H  L  P  R  E  F  V  E  C  E  A  Q  E  A  L  F  C  P  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0077G20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="42617" PGL_stop="42136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42617" e_stop="42136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="42617" e_stop="42136" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42617" stop="42136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328251" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCATCTCTGCAATATTCATCTTCTCTATATCATATTTAAGTTTTTTTTTAATTAATGAAACCAAGAAGGAAGGAAGAAATTAAGAGAAGATGAAGAAGCTGAATTTGTTATTGAGGAAGTGTAAGACTTTGTCAAGGCAACTAGGAAGAAGCTCATCTTATAGTAGTTTAAGGTCAAAATCTGCAAGAGAAGATTTTTGGAATGTGGAAGATAATATGGAAGATTTTGAGACAATTCTTGTTGGCAACTCAAGAAGGAAATATGTCATAAAATCAAAATACTTGAGCCATCCACTATTGAATGCTCTAATAGAGAAATCAAAGCAAAAGCATGGGGAAAAAGATCATCTTTCCGTTAAGTGTGAAGTTGTGCTTTTTGATCATCTTCTCTGGTTACTTGAAAATGCTGATCCTATCAACCTTAATTCTGATTCATTTGAGGAATTGGCTGATCTATATGTTGTTTAATGTGAATAATTT</gDNA_template>
            <first_frame> F  P  S  L  Q  Y  S  S  S  L  Y  H  I  *  V  F  F  *  L  M  K  P  R  R  K  E  E  I  K  R  R  *  R  S  *  I  C  Y  *  G  S  V  R  L  C  Q  G  N  *  E  E  A  H  L  I  V  V  *  G  Q  N  L  Q  E  K  I  F  G  M  W  K  I  I  W  K  I  L  R  Q  F  L  L  A  T  Q  E  G  N  M  S  *  N  Q  N  T  *  A  I  H  Y  *  M  L  *  *  R  N  Q  S  K  S  M  G  K  K  I  I  F  P  L  S  V  K  L  C  F  L  I  I  F  S  G  Y  L  K  M  L  I  L  S  T  L  I  L  I  H  L  R  N  W  L  I  Y  M  L  F  N  V  N  N   </first_frame>
            <second_frame>  F  H  L  C  N  I  H  L  L  Y  I  I  F  K  F  F  F  N  *  *  N  Q  E  G  R  K  K  L  R  E  D  E  E  A  E  F  V  I  E  E  V  *  D  F  V  K  A  T  R  K  K  L  I  L  *  *  F  K  V  K  I  C  K  R  R  F  L  E  C  G  R  *  Y  G  R  F  *  D  N  S  C  W  Q  L  K  K  E  I  C  H  K  I  K  I  L  E  P  S  T  I  E  C  S  N  R  E  I  K  A  K  A  W  G  K  R  S  S  F  R  *  V  *  S  C  A  F  *  S  S  S  L  V  T  *  K  C  *  S  Y  Q  P  *  F  *  F  I  *  G  I  G  *  S  I  C  C  L  M  *  I  I  </second_frame>
            <third_frame>   S  I  S  A  I  F  I  F  S  I  S  Y  L  S  F  F  L  I  N  E  T  K  K  E  G  R  N  *  E  K  M  K  K  L  N  L  L  L  R  K  C  K  T  L  S  R  Q  L  G  R  S  S  S  Y  S  S  L  R  S  K  S  A  R  E  D  F  W  N  V  E  D  N  M  E  D  F  E  T  I  L  V  G  N  S  R  R  K  Y  V  I  K  S  K  Y  L  S  H  P  L  L  N  A  L  I  E  K  S  K  Q  K  H  G  E  K  D  H  L  S  V  K  C  E  V  V  L  F  D  H  L  L  W  L  L  E  N  A  D  P  I  N  L  N  S  D  S  F  E  E  L  A  D  L  Y  V  V  *  C  E  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42531" stop="42148"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMKKLNLLLRKCKTLSRQLGRSSSYSSLRSKSAREDFWNVEDNMEDFETILVGNSRRKYVIKSKYLSHPLLNALIEKSKQKHGEKDHLSVKCEVVLFDHLLWLLENADPINLNSDSFEELADLYVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="52409" PGL_stop="43880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52409" e_stop="51999"/>
            <exon e_start="51013" e_stop="50825"/>
            <exon e_start="50698" e_stop="50645"/>
            <exon e_start="49337" e_stop="49227"/>
            <exon e_start="48850" e_stop="48788"/>
            <exon e_start="48639" e_stop="48385"/>
            <exon e_start="47883" e_stop="47737"/>
            <exon e_start="47631" e_stop="47604"/>
            <exon e_start="46708" e_stop="46638"/>
            <exon e_start="45384" e_stop="45325"/>
            <exon e_start="44493" e_stop="43966"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52409" e_stop="51999" e_length="411"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.914">
            <gDNA_intron_boundary i_start="51998" i_stop="51014" i_length="985"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51013" e_stop="50825" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50824" i_stop="50699" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50698" e_stop="50645" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49337" e_stop="49227" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49226" i_stop="48851" i_length="376"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48850" e_stop="48788" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.989">
            <gDNA_intron_boundary i_start="48787" i_stop="48640" i_length="148"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="48639" e_stop="48385" e_length="255"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="48384" i_stop="47884" i_length="501"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47883" e_stop="47737" e_length="147"/>
          </exon>
          <intron i_serial="7" don_prob="0.803" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47736" i_stop="47632" i_length="105"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="47631" e_stop="47604" e_length="28"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47603" i_stop="46709" i_length="895"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="46708" e_stop="46638" e_length="71"/>
          </exon>
          <intron i_serial="9" don_prob="0.909" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46637" i_stop="45385" i_length="1253"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="45384" e_stop="45325" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.854">
            <gDNA_intron_boundary i_start="45324" i_stop="44494" i_length="831"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="44493" e_stop="43966" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52409" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49227"/>
              <exon start="48850" stop="48788"/>
              <exon start="48639" stop="48385"/>
              <exon start="47883" stop="47737"/>
              <exon start="47631" stop="47604"/>
              <exon start="46708" stop="46638"/>
              <exon start="45384" stop="45325"/>
              <exon start="44493" stop="44054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52408" stop="51999"/>
              <exon start="51013" stop="50910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52308" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49227"/>
              <exon start="48850" stop="48788"/>
              <exon start="48639" stop="48488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52308" stop="51999"/>
              <exon start="51013" stop="50825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52285" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52278" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49227"/>
              <exon start="48850" stop="48790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52262" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52248" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52242" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49227"/>
              <exon start="48850" stop="48788"/>
              <exon start="48639" stop="48421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52217" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50953" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49227"/>
              <exon start="48850" stop="48788"/>
              <exon start="48639" stop="48385"/>
              <exon start="47883" stop="47808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50696" stop="50645"/>
              <exon start="49337" stop="49227"/>
              <exon start="48850" stop="48788"/>
              <exon start="48639" stop="48385"/>
              <exon start="47883" stop="47814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49307" stop="49227"/>
              <exon start="48850" stop="48788"/>
              <exon start="48639" stop="48385"/>
              <exon start="47883" stop="47737"/>
              <exon start="47631" stop="47604"/>
              <exon start="46708" stop="46638"/>
              <exon start="45384" stop="45326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48618" stop="48385"/>
              <exon start="47883" stop="47737"/>
              <exon start="47631" stop="47604"/>
              <exon start="46708" stop="46638"/>
              <exon start="45384" stop="45325"/>
              <exon start="44493" stop="44419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48550" stop="48385"/>
              <exon start="47883" stop="47737"/>
              <exon start="47631" stop="47604"/>
              <exon start="46708" stop="46638"/>
              <exon start="45384" stop="45325"/>
              <exon start="44493" stop="44184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48550" stop="48385"/>
              <exon start="47883" stop="47737"/>
              <exon start="47631" stop="47604"/>
              <exon start="46708" stop="46638"/>
              <exon start="45384" stop="45336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48540" stop="48385"/>
              <exon start="47883" stop="47737"/>
              <exon start="47631" stop="47604"/>
              <exon start="46708" stop="46638"/>
              <exon start="45384" stop="45325"/>
              <exon start="44493" stop="44379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44311" stop="43966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44311" stop="43966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTACATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC : GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG : GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG : GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG : ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG : GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG : GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG : GAAACCAAAGCATGGACCATCCTCACAG : GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG : GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTG : TTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAA</gDNA_template>
            <first_frame> F  V  S  F  S  Q  I  F  G  L  K  Y  N  F  G  A  I  I  W  V  I  F  *  F  T  C  S  V  V  A  E  L  N  P  R  N  I  C  S  C  S  T  A  I  D  S  R  N  A  V  C  T  T  Q  *  A  L  Q  L  A  S  G  K  M  A  R  M  A  C  S  Q  L  L  P  S  M  A  I  P  L  K  S  S  F  L  N  G  S  S  H  Q  W  L  R  L  S  E  S  T  H  P  V  V  L  I  K  R  R  F  S  V  A  K  I  S  M  S  L  R  A  G  I  V  G  L  P  N  V  G  K  S  T  L  F  N  A  V  :  V  E  N  G  K  A  Q  A  A  N  F  P  F  C  T  I  E  P  N  V  G  I  V  A  V  P  D  T  R  L  H  V  L  S  D  I  S  K  S  K  R  A  V  P  A  S  I  E  F  V  D  I  A  G  L  V  K  G  A  S  Q  G  E  :  G  L  G  N  K  F  L  S  H  I  R  E  V  D  S  I  L  Q  :  V  V  R  C  F  E  D  N  D  I  V  H  V  N  G  K  V  E  P  K  A  D  I  D  V  I  N  L  E  L  I  F  S  D  L  D  Q  :  I  E  K  R  M  E  K  L  K  K  G  R  A  K  D  S  Q  A  K  V  K  :  E  E  A  E  K  S  A  L  E  K  I  Q  Q  A  L  L  D  G  K  P  A  R  S  V  S  L  S  E  F  E  K  D  A  I  T  Q  L  C  L  L  T  M  K  P  V  I  F  V  A  N  V  A  E  S  E  V  A  E  P  E  N  N  P  H  V  K  E  V  I  K  K  A  A  E  L  N  S  G  V  V  T  I  S  A  Q  :  V  E  S  E  L  S  E  L  P  L  E  E  R  I  E  Y  L  K  S  L  G  V  N  E  S  G  L  G  N  L  I  R  E  T  Y  G  L  L  G  L  R  T  Y  F  T  S  G  E  K  :  E  T  K  A  W  T  I  L  T   : G  M  T  A  P  Q  A  A  G  V  I  H  S  D  F  E  K  G  F  I  R  A  E  T  :  V  A  Y  D  D  F  V  S  A  G  S  F  A  A  A  R  E  K  G  L  :  L  R  L  E  G  K  D  Y  V  V  Q  E  G  D  I  M  L  F  R  F  N  V  *  L  K  N  S  W  *  R  R  F  H  E  F  L  C  C  V  H  G  C  L  N  H  S  D  F  *  D  S  R  F  C  Y  K  R  F  N  G  E  A  Y  N  L  *  A  S  Q  V  C  E  F  *  G  T  A  T  G  A  D  E  I  D  L  W  F  S  L  S  C  Y  K  S  Q  F  L  A  R  H  V  T  F  N  V  H  R  S  F  D  F  V  *  Y  Y  C  N  S  F  T  P  Y  H  P  P  Q  Y  A  L  V  G  F  C  N  M  I  F  A  I  N  G  K  K  K  I  Q  K  *  N  F  C  Q  F  D  E  F  *  I  V  Q  T  V  R  I  H  I  I  L  *  L  E  S  L  A  A  * </first_frame>
            <second_frame>  L  F  H  F  P  K  F  L  G  S  N  T  I  L  V  Q  L  F  G  *  F  S  N  L  H  V  A  S  S  L  S  *  T  R  E  I  F  V  V  V  A  R  R  *  I  A  A  T  L  C  V  P  L  N  K  H  F  N  L  L  V  V  K  W  R  E  W  L  A  L  S  F  F  L  P  W  Q  F  R  S  S  L  L  S  S  M  V  L  L  T  S  G  Y  D  S  Q  N  L  R  I  L  W  Y  S  S  K  G  A  S  P  S  L  R  *  A  *  V  C  E  L  A  S  L  A  F  L  M  S  A  S  P  R  C  S  T  P  S :   L  R  M  E  R  L  R  L  L  I  F  L  F  A  Q  *  S  Q  M  *  G  *  S  L  S  L  I  H  V  S  M  F  F  L  I  *  A  N  P  N  E  R  S  R  L  R  *  S  L  L  I  L  L  D  L  *  R  E  P  V  K  G  R :   A  W  G  I  S  S  C  H  I  Y  V  K  W  T  P  Y  F  R :   *  Y  V  V  L  R  T  M  T  L  F  M  *  M  G  R  L  S  Q  K  L  I  L  M  *  S  T  W  N  *  F  S  Q  I  W  I  R :   L  R  K  E  W  R  N  S  K  K  V  E  L  K  I  H  K  L  K  *  R :   R  K  Q  K  S  L  P  W  R  K  Y  N  K  H  Y  W  M  E  N  Q  H  D  Q  Y  L  C  R  S  L  K  R  M  L  *  H  N  F  V  F  *  Q  *  S  L  S  Y  L  W  Q  M  *  R  N  Q  R  *  L  N  L  K  I  I  L  M  *  R  K  *  L  K  K  L  L  S  *  I  L  V  W  *  L  F  Q  R  R :   L  S  L  S  Y  L  N  F  L  *  K  K  E  *  N  I  *  N  R  L  V  S  M  K  V  A  L  E  I  S  S  E  K  L  M  V  S  *  G  C  V  H  T  S  L  L  A  R  R :   K  P  K  H  G  P  S  S  Q  :  E  *  L  L  L  K  Q  L  G  L  F  T  P  T  L  K  R  A  S  S  G  Q  R  R :   L  L  T  M  T  L  F  L  L  V  L  L  Q  L  Q  G  R  K  D  C :   *  G  *  K  E  K  I  M  L  C  K  K  G  I  *  C  C  S  G  S  M  S  N  *  K  T  V  G  E  G  D  F  T  N  F  Y  V  V  F  T  V  V  *  T  I  Q  I  S  E  T  A  D  F  A  T  R  G  L  M  V  K  H  I  I  Y  E  L  A  R  F  V  N  F  K  A  L  Q  L  V  L  M  R  *  I  Y  G  F  H  S  A  A  T  N  L  N  F  W  L  V  M  *  H  S  M  S  I  G  H  S  T  L  C  N  I  I  V  I  L  S  L  L  I  T  L  P  N  T  P  *  L  A  S  A  I  *  F  L  Q  *  T  E  R  R  R  F  K  S  R  T  F  V  S  L  M  S  S  E  L  S  K  Q  S  A  F  I  *  F  Y  S  L  K  A  *  L  H   </second_frame>
            <third_frame>   C  F  I  F  P  N  F  W  A  Q  I  Q  F  W  C  N  Y  L  G  N  F  L  I  Y  M  *  R  R  R  *  V  K  P  E  K  Y  L  *  L  *  H  G  D  R  *  P  Q  R  C  V  Y  H  S  I  S  T  S  T  C  *  W  *  N  G  E  N  G  L  L  S  A  S  S  F  H  G  N  S  A  Q  V  F  F  P  Q  W  F  F  S  P  V  V  T  T  L  R  I  Y  A  S  C  G  T  H  Q  K  A  L  L  R  R  *  D  K  H  E  F  A  S  W  H  R  W  P  S  *  C  R  Q  V  H  A  V  Q  R  R   : R  *  E  W  K  G  S  G  C  *  F  S  F  L  H  N  R  A  K  C  R  D  S  R  C  P  *  Y  T  S  P  C  S  F  *  Y  K  Q  I  Q  T  S  G  P  G  F  D  R  V  C  *  Y  C  W  T  C  K  G  S  Q  S  R  G   : G  P  G  E  *  V  L  V  T  Y  T  *  S  G  L  H  T  S   : G  S  T  L  F  *  G  Q  *  H  C  S  C  E  W  E  G  *  A  K  S  *  Y  *  C  N  Q  L  G  I  N  F  L  R  F  G  S   : D  *  E  K  N  G  E  T  Q  K  R  *  S  *  R  F  T  S  *  S  K   : G  G  S  R  K  V  C  L  G  E  N  T  T  S  T  T  G  W  K  T  S  T  I  S  I  F  V  G  V  *  K  G  C  Y  N  T  T  L  S  S  N  N  E  A  C  H  I  C  G  K  C  S  G  I  R  G  S  *  T  *  K  *  S  S  C  E  G  S  N  *  K  S  C  *  V  K  F  W  C  G  N  Y  F  S  A   : G  *  V  *  A  I  *  T  S  F  R  R  K  N  R  I  F  E  I  A  W  C  Q  *  K  W  P  W  K  S  H  Q  R  N  L  W  S  P  R  V  A  Y  I  L  H  F  W  R  E   : G  N  Q  S  M  D  H  P  H  R :   N  D  C  S  S  S  S  W  G  Y  S  L  R  L  *  K  G  L  H  Q  G  R  D   : G  C  L  R  *  L  C  F  C  W  F  F  C  S  C  K  G  E  R  T   : V  E  V  R  R  K  R  L  C  C  A  R  R  G  Y  N  A  V  P  V  Q  C  L  I  E  K  Q  L  V  K  E  I  S  R  I  F  M  L  C  S  R  L  F  E  P  F  R  F  L  R  Q  Q  I  L  L  Q  E  V  *  W  *  S  I  *  F  M  S  *  P  G  L  *  I  L  R  H  C  N  W  C  *  *  D  R  F  M  V  F  T  Q  L  L  Q  I  S  I  F  G  S  S  C  N  I  Q  C  P  *  V  I  R  L  C  V  I  L  L  *  F  F  H  S  L  S  P  S  P  I  R  L  S  W  L  L  Q  Y  D  F  C  N  K  R  K  E  E  D  S  K  V  E  L  L  S  V  *  *  V  L  N  C  P  N  S  P  H  S  Y  N  S  I  A  *  K  L  S  C  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52244" stop="51999"/>
                    <exon start="51013" stop="50825"/>
                    <exon start="50698" stop="50645"/>
                    <exon start="49337" stop="49227"/>
                    <exon start="48850" stop="48788"/>
                    <exon start="48639" stop="48385"/>
                    <exon start="47883" stop="47737"/>
                    <exon start="47631" stop="47604"/>
                    <exon start="46708" stop="46638"/>
                    <exon start="45384" stop="45325"/>
                    <exon start="44493" stop="44425"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1290</number_coding_nucleotides>
                  <number_encoded_amino_acids>430</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALQLASGKMARMACSQLLPSMAIPLKSSFLNGSSHQWLRLSESTHPVVLIKRRFSVAKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDTRLHVLSDISKSKRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVEPKADIDVINLELIFSDLDQIEKRMEKLKKGRAKDSQAKVKEEAEKSALEKIQQALLDGKPARSVSLSEFEKDAITQLCLLTMKPVIFVANVAESEVAEPENNPHVKEVIKKAAELNSGVVTISAQVESELSELPLEERIEYLKSLGVNESGLGNLIRETYGLLGLRTYFTSGEKETKAWTILTGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVSAGSFAAAREKGLLRLEGKDYVVQEGDIMLFRFNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52408" e_stop="51999"/>
            <exon e_start="51013" e_stop="50825"/>
            <exon e_start="50698" e_stop="50645"/>
            <exon e_start="49337" e_stop="49227"/>
            <exon e_start="48850" e_stop="48788"/>
            <exon e_start="48629" e_stop="48385"/>
            <exon e_start="47883" e_stop="47737"/>
            <exon e_start="47631" e_stop="47604"/>
            <exon e_start="46708" e_stop="46638"/>
            <exon e_start="45384" e_stop="45325"/>
            <exon e_start="44493" e_stop="43966"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.914" e_score="0.980"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="52408" e_stop="51999" e_length="410"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.914">
            <gDNA_intron_boundary i_start="51998" i_stop="51014" i_length="985"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51013" e_stop="50825" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50824" i_stop="50699" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50698" e_stop="50645" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49337" e_stop="49227" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49226" i_stop="48851" i_length="376"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48850" e_stop="48788" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48787" i_stop="48630" i_length="158"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="48629" e_stop="48385" e_length="245"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="48384" i_stop="47884" i_length="501"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47883" e_stop="47737" e_length="147"/>
          </exon>
          <intron i_serial="7" don_prob="0.803" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47736" i_stop="47632" i_length="105"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="47631" e_stop="47604" e_length="28"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47603" i_stop="46709" i_length="895"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="46708" e_stop="46638" e_length="71"/>
          </exon>
          <intron i_serial="9" don_prob="0.909" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46637" i_stop="45385" i_length="1253"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="45384" e_stop="45325" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.854">
            <gDNA_intron_boundary i_start="45324" i_stop="44494" i_length="831"/>
          </intron>
          <exon e_serial="11" e_score="0.994">
            <gDNA_exon_boundary e_start="44493" e_stop="43966" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52408" stop="51999"/>
              <exon start="51013" stop="50910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52308" stop="51999"/>
              <exon start="51013" stop="50825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52285" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52278" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49227"/>
              <exon start="48850" stop="48790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52262" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52248" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52217" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49337" stop="49227"/>
              <exon start="48850" stop="48788"/>
              <exon start="48629" stop="48385"/>
              <exon start="47883" stop="47793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48618" stop="48385"/>
              <exon start="47883" stop="47737"/>
              <exon start="47631" stop="47604"/>
              <exon start="46708" stop="46638"/>
              <exon start="45384" stop="45325"/>
              <exon start="44493" stop="44419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48550" stop="48385"/>
              <exon start="47883" stop="47737"/>
              <exon start="47631" stop="47604"/>
              <exon start="46708" stop="46638"/>
              <exon start="45384" stop="45325"/>
              <exon start="44493" stop="44184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48550" stop="48385"/>
              <exon start="47883" stop="47737"/>
              <exon start="47631" stop="47604"/>
              <exon start="46708" stop="46638"/>
              <exon start="45384" stop="45336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48540" stop="48385"/>
              <exon start="47883" stop="47737"/>
              <exon start="47631" stop="47604"/>
              <exon start="46708" stop="46638"/>
              <exon start="45384" stop="45325"/>
              <exon start="44493" stop="44379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44311" stop="43966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44311" stop="43966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTACATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC : GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG : GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG : GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG : ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG : AAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAG : GTTGAGTCTGAGCTATCTGAACTTCCTTTAGAAGAAAGAATAGAATATTTGAAATCGCTTGGTGTCAATGAAAGTGGCCTTGGAAATCTCATCAGAGAAACTTATGGTCTCCTAGGGTTGCGTACATACTTCACTTCTGGCGAGAAG : GAAACCAAAGCATGGACCATCCTCACAG : GAATGACTGCTCCTCAAGCAGCTGGGGTTATTCACTCCGACTTTGAAAAGGGCTTCATCAGGGCAGAGACG : GTTGCTTACGATGACTTTGTTTCTGCTGGTTCTTTTGCAGCTGCAAGGGAGAAAGGACTG : TTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAA</gDNA_template>
            <first_frame> L  F  H  F  P  K  F  L  G  S  N  T  I  L  V  Q  L  F  G  *  F  S  N  L  H  V  A  S  S  L  S  *  T  R  E  I  F  V  V  V  A  R  R  *  I  A  A  T  L  C  V  P  L  N  K  H  F  N  L  L  V  V  K  W  R  E  W  L  A  L  S  F  F  L  P  W  Q  F  R  S  S  L  L  S  S  M  V  L  L  T  S  G  Y  D  S  Q  N  L  R  I  L  W  Y  S  S  K  G  A  S  P  S  L  R  *  A  *  V  C  E  L  A  S  L  A  F  L  M  S  A  S  P  R  C  S  T  P  S :   L  R  M  E  R  L  R  L  L  I  F  L  F  A  Q  *  S  Q  M  *  G  *  S  L  S  L  I  H  V  S  M  F  F  L  I  *  A  N  P  N  E  R  S  R  L  R  *  S  L  L  I  L  L  D  L  *  R  E  P  V  K  G  R :   A  W  G  I  S  S  C  H  I  Y  V  K  W  T  P  Y  F  R :   *  Y  V  V  L  R  T  M  T  L  F  M  *  M  G  R  L  S  Q  K  L  I  L  M  *  S  T  W  N  *  F  S  Q  I  W  I  R :   L  R  K  E  W  R  N  S  K  K  V  E  L  K  I  H  K  L  K  *  R :   K  V  C  L  G  E  N  T  T  S  T  T  G  W  K  T  S  T  I  S  I  F  V  G  V  *  K  G  C  Y  N  T  T  L  S  S  N  N  E  A  C  H  I  C  G  K  C  S  G  I  R  G  S  *  T  *  K  *  S  S  C  E  G  S  N  *  K  S  C  *  V  K  F  W  C  G  N  Y  F  S  A   : G  *  V  *  A  I  *  T  S  F  R  R  K  N  R  I  F  E  I  A  W  C  Q  *  K  W  P  W  K  S  H  Q  R  N  L  W  S  P  R  V  A  Y  I  L  H  F  W  R  E   : G  N  Q  S  M  D  H  P  H  R :   N  D  C  S  S  S  S  W  G  Y  S  L  R  L  *  K  G  L  H  Q  G  R  D   : G  C  L  R  *  L  C  F  C  W  F  F  C  S  C  K  G  E  R  T   : V  E  V  R  R  K  R  L  C  C  A  R  R  G  Y  N  A  V  P  V  Q  C  L  I  E  K  Q  L  V  K  E  I  S  R  I  F  M  L  C  S  R  L  F  E  P  F  R  F  L  R  Q  Q  I  L  L  Q  E  V  *  W  *  S  I  *  F  M  S  *  P  G  L  *  I  L  R  H  C  N  W  C  *  *  D  R  F  M  V  F  T  Q  L  L  Q  I  S  I  F  G  S  S  C  N  I  Q  C  P  *  V  I  R  L  C  V  I  L  L  *  F  F  H  S  L  S  P  S  P  I  R  L  S  W  L  L  Q  Y  D  F  C  N  K  R  K  E  E  D  S  K  V  E  L  L  S  V  *  *  V  L  N  C  P  N  S  P  H  S  Y  N  S  I  A  *  K  L  S  C  I  </first_frame>
            <second_frame>  C  F  I  F  P  N  F  W  A  Q  I  Q  F  W  C  N  Y  L  G  N  F  L  I  Y  M  *  R  R  R  *  V  K  P  E  K  Y  L  *  L  *  H  G  D  R  *  P  Q  R  C  V  Y  H  S  I  S  T  S  T  C  *  W  *  N  G  E  N  G  L  L  S  A  S  S  F  H  G  N  S  A  Q  V  F  F  P  Q  W  F  F  S  P  V  V  T  T  L  R  I  Y  A  S  C  G  T  H  Q  K  A  L  L  R  R  *  D  K  H  E  F  A  S  W  H  R  W  P  S  *  C  R  Q  V  H  A  V  Q  R  R   : R  *  E  W  K  G  S  G  C  *  F  S  F  L  H  N  R  A  K  C  R  D  S  R  C  P  *  Y  T  S  P  C  S  F  *  Y  K  Q  I  Q  T  S  G  P  G  F  D  R  V  C  *  Y  C  W  T  C  K  G  S  Q  S  R  G   : G  P  G  E  *  V  L  V  T  Y  T  *  S  G  L  H  T  S   : G  S  T  L  F  *  G  Q  *  H  C  S  C  E  W  E  G  *  A  K  S  *  Y  *  C  N  Q  L  G  I  N  F  L  R  F  G  S   : D  *  E  K  N  G  E  T  Q  K  R  *  S  *  R  F  T  S  *  S  K   : E  K  S  A  L  E  K  I  Q  Q  A  L  L  D  G  K  P  A  R  S  V  S  L  S  E  F  E  K  D  A  I  T  Q  L  C  L  L  T  M  K  P  V  I  F  V  A  N  V  A  E  S  E  V  A  E  P  E  N  N  P  H  V  K  E  V  I  K  K  A  A  E  L  N  S  G  V  V  T  I  S  A  Q  :  V  E  S  E  L  S  E  L  P  L  E  E  R  I  E  Y  L  K  S  L  G  V  N  E  S  G  L  G  N  L  I  R  E  T  Y  G  L  L  G  L  R  T  Y  F  T  S  G  E  K  :  E  T  K  A  W  T  I  L  T   : G  M  T  A  P  Q  A  A  G  V  I  H  S  D  F  E  K  G  F  I  R  A  E  T  :  V  A  Y  D  D  F  V  S  A  G  S  F  A  A  A  R  E  K  G  L  :  L  R  L  E  G  K  D  Y  V  V  Q  E  G  D  I  M  L  F  R  F  N  V  *  L  K  N  S  W  *  R  R  F  H  E  F  L  C  C  V  H  G  C  L  N  H  S  D  F  *  D  S  R  F  C  Y  K  R  F  N  G  E  A  Y  N  L  *  A  S  Q  V  C  E  F  *  G  T  A  T  G  A  D  E  I  D  L  W  F  S  L  S  C  Y  K  S  Q  F  L  A  R  H  V  T  F  N  V  H  R  S  F  D  F  V  *  Y  Y  C  N  S  F  T  P  Y  H  P  P  Q  Y  A  L  V  G  F  C  N  M  I  F  A  I  N  G  K  K  K  I  Q  K  *  N  F  C  Q  F  D  E  F  *  I  V  Q  T  V  R  I  H  I  I  L  *  L  E  S  L  A  A  * </second_frame>
            <third_frame>   V  S  F  S  Q  I  F  G  L  K  Y  N  F  G  A  I  I  W  V  I  F  *  F  T  C  S  V  V  A  E  L  N  P  R  N  I  C  S  C  S  T  A  I  D  S  R  N  A  V  C  T  T  Q  *  A  L  Q  L  A  S  G  K  M  A  R  M  A  C  S  Q  L  L  P  S  M  A  I  P  L  K  S  S  F  L  N  G  S  S  H  Q  W  L  R  L  S  E  S  T  H  P  V  V  L  I  K  R  R  F  S  V  A  K  I  S  M  S  L  R  A  G  I  V  G  L  P  N  V  G  K  S  T  L  F  N  A  V  :  V  E  N  G  K  A  Q  A  A  N  F  P  F  C  T  I  E  P  N  V  G  I  V  A  V  P  D  T  R  L  H  V  L  S  D  I  S  K  S  K  R  A  V  P  A  S  I  E  F  V  D  I  A  G  L  V  K  G  A  S  Q  G  E  :  G  L  G  N  K  F  L  S  H  I  R  E  V  D  S  I  L  Q  :  V  V  R  C  F  E  D  N  D  I  V  H  V  N  G  K  V  E  P  K  A  D  I  D  V  I  N  L  E  L  I  F  S  D  L  D  Q  :  I  E  K  R  M  E  K  L  K  K  G  R  A  K  D  S  Q  A  K  V  K  :  K  S  L  P  W  R  K  Y  N  K  H  Y  W  M  E  N  Q  H  D  Q  Y  L  C  R  S  L  K  R  M  L  *  H  N  F  V  F  *  Q  *  S  L  S  Y  L  W  Q  M  *  R  N  Q  R  *  L  N  L  K  I  I  L  M  *  R  K  *  L  K  K  L  L  S  *  I  L  V  W  *  L  F  Q  R  R :   L  S  L  S  Y  L  N  F  L  *  K  K  E  *  N  I  *  N  R  L  V  S  M  K  V  A  L  E  I  S  S  E  K  L  M  V  S  *  G  C  V  H  T  S  L  L  A  R  R :   K  P  K  H  G  P  S  S  Q  :  E  *  L  L  L  K  Q  L  G  L  F  T  P  T  L  K  R  A  S  S  G  Q  R  R :   L  L  T  M  T  L  F  L  L  V  L  L  Q  L  Q  G  R  K  D  C :   *  G  *  K  E  K  I  M  L  C  K  K  G  I  *  C  C  S  G  S  M  S  N  *  K  T  V  G  E  G  D  F  T  N  F  Y  V  V  F  T  V  V  *  T  I  Q  I  S  E  T  A  D  F  A  T  R  G  L  M  V  K  H  I  I  Y  E  L  A  R  F  V  N  F  K  A  L  Q  L  V  L  M  R  *  I  Y  G  F  H  S  A  A  T  N  L  N  F  W  L  V  M  *  H  S  M  S  I  G  H  S  T  L  C  N  I  I  V  I  L  S  L  L  I  T  L  P  N  T  P  *  L  A  S  A  I  *  F  L  Q  *  T  E  R  R  R  F  K  S  R  T  F  V  S  L  M  S  S  E  L  S  K  Q  S  A  F  I  *  F  Y  S  L  K  A  *  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52244" stop="51999"/>
                    <exon start="51013" stop="50825"/>
                    <exon start="50698" stop="50645"/>
                    <exon start="49337" stop="49227"/>
                    <exon start="48850" stop="48788"/>
                    <exon start="48629" stop="48537"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALQLASGKMARMACSQLLPSMAIPLKSSFLNGSSHQWLRLSESTHPVVLIKRRFSVAKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDTRLHVLSDISKSKRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVEPKADIDVINLELIFSDLDQIEKRMEKLKKGRAKDSQAKVKKSLPWRKYNKHYWMENQHDQYLCRSLKRML*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45370" stop="45325"/>
                    <exon start="44493" stop="44318"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCFCWFFCSCKGERTVEVRRKRLCCARRGYNAVPVQCLIEKQLVKEISRIFMLCSRLFEPFRFLRQQILLQEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45065" e_stop="43880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45065" e_stop="43880" e_length="1186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45065" stop="44389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45065" stop="44407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45065" stop="44414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45065" stop="44464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45065" stop="44504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44580" stop="43880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44551" stop="43880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44532" stop="43880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44311" stop="43966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44311" stop="43966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCTGAAATGTCTCGAGGAATCAGTTAAAACTTAAGACTCGTGATTGCAGTGTAATTTCAAAAATAGATAAATATTTAAAGTAACGGTAAATAAGCTAAATATTTCAATTTTAGCTGTTAAAAAAGTTTATTTTAAAAAAAAAACCCTTAAAATAACCTTAGAGTCTATCTTTGGCTTGTAAGCACATGCAGTGGTTACATTAAAATACCTTCCCGAAGCAAAAAGCTTAGCCAAACACAAATAAAGAATCCATGGTTGTTTTTGGTGTCATTTCCTGATTATTGTCAATTGGAACCTTTTTAAATTTTTTAGTGAACCATTATCATCTCAATAACCTTCTTACTTTGGCTCCAGCACTTCAAAATTAAATGTTCATTGCCTCCCCTATCCCCAAATTGTAATGAGGTTGCTAATCTCATGTAACTTTTACTAGTAAGTAGTTTTCTTTCACAAAGATAATTACTTGTGTAGTAGAATGTAAACGGTGCTTCTATGTGAGCACTAAGTCTACTGACCCGTGCAAACAAGAGAATAGATCAAGCTGGTTACAGGATTTATCTGTGTATGCAGTTGAGGTTAGAAGGAAAAGATTATGTTGTGCAAGAAGGGGATATAATGCTGTTCCGGTTCAATGTCTAATTGAAAAACAGTTGGTGAAGGAGATTTCACGAATTTTTATGTTGTGTTCACGGTTGTTTGAACCATTCAGATTTCTGAGACAGCAGATTTTGCTACAAGAGGTTTAATGGTGAAGCATATAATTTATGAGCTAGCCAGGTTTGTGAATTTTAAGGCACTGCAACTGGTGCTGATGAGATAGATTTATGGTTTTCACTCAGCTGCTACAAATCTCAATTTTTGGCTCGTCATGTAACATTCAATGTCCATAGGTCATTCGACTTTGTGTAATATTATTGTAATTCTTTCACTCCTTATCACCCTCCCCAATACGCCTTAGTTGGCTTCTGCAATATGATTTTTGCAATAAACGGAAAGAAGAAGATTCAAAAGTAGAACTTTTGTCAGTTTGATGAGTTCTGAATTGTCCAAACAGTCCGCATTCATATAATTCTATAGCTTGAAAGCTTAGCTGCATAAATTTCTCATTGCTCATTTTTCTTGTTGATTTCATTTGTGTGAGAGCATAAATAAATAGATCTTGGAAGCTTGACCAAACAAGGATA</gDNA_template>
            <first_frame> Y  L  K  C  L  E  E  S  V  K  T  *  D  S  *  L  Q  C  N  F  K  N  R  *  I  F  K  V  T  V  N  K  L  N  I  S  I  L  A  V  K  K  V  Y  F  K  K  K  T  L  K  I  T  L  E  S  I  F  G  L  *  A  H  A  V  V  T  L  K  Y  L  P  E  A  K  S  L  A  K  H  K  *  R  I  H  G  C  F  W  C  H  F  L  I  I  V  N  W  N  L  F  K  F  F  S  E  P  L  S  S  Q  *  P  S  Y  F  G  S  S  T  S  K  L  N  V  H  C  L  P  Y  P  Q  I  V  M  R  L  L  I  S  C  N  F  Y  *  *  V  V  F  F  H  K  D  N  Y  L  C  S  R  M  *  T  V  L  L  C  E  H  *  V  Y  *  P  V  Q  T  R  E  *  I  K  L  V  T  G  F  I  C  V  C  S  *  G  *  K  E  K  I  M  L  C  K  K  G  I  *  C  C  S  G  S  M  S  N  *  K  T  V  G  E  G  D  F  T  N  F  Y  V  V  F  T  V  V  *  T  I  Q  I  S  E  T  A  D  F  A  T  R  G  L  M  V  K  H  I  I  Y  E  L  A  R  F  V  N  F  K  A  L  Q  L  V  L  M  R  *  I  Y  G  F  H  S  A  A  T  N  L  N  F  W  L  V  M  *  H  S  M  S  I  G  H  S  T  L  C  N  I  I  V  I  L  S  L  L  I  T  L  P  N  T  P  *  L  A  S  A  I  *  F  L  Q  *  T  E  R  R  R  F  K  S  R  T  F  V  S  L  M  S  S  E  L  S  K  Q  S  A  F  I  *  F  Y  S  L  K  A  *  L  H  K  F  L  I  A  H  F  S  C  *  F  H  L  C  E  S  I  N  K  *  I  L  E  A  *  P  N  K  D  </first_frame>
            <second_frame>  T  *  N  V  S  R  N  Q  L  K  L  K  T  R  D  C  S  V  I  S  K  I  D  K  Y  L  K  *  R  *  I  S  *  I  F  Q  F  *  L  L  K  K  F  I  L  K  K  K  P  L  K  *  P  *  S  L  S  L  A  C  K  H  M  Q  W  L  H  *  N  T  F  P  K  Q  K  A  *  P  N  T  N  K  E  S  M  V  V  F  G  V  I  S  *  L  L  S  I  G  T  F  L  N  F  L  V  N  H  Y  H  L  N  N  L  L  T  L  A  P  A  L  Q  N  *  M  F  I  A  S  P  I  P  K  L  *  *  G  C  *  S  H  V  T  F  T  S  K  *  F  S  F  T  K  I  I  T  C  V  V  E  C  K  R  C  F  Y  V  S  T  K  S  T  D  P  C  K  Q  E  N  R  S  S  W  L  Q  D  L  S  V  Y  A  V  E  V  R  R  K  R  L  C  C  A  R  R  G  Y  N  A  V  P  V  Q  C  L  I  E  K  Q  L  V  K  E  I  S  R  I  F  M  L  C  S  R  L  F  E  P  F  R  F  L  R  Q  Q  I  L  L  Q  E  V  *  W  *  S  I  *  F  M  S  *  P  G  L  *  I  L  R  H  C  N  W  C  *  *  D  R  F  M  V  F  T  Q  L  L  Q  I  S  I  F  G  S  S  C  N  I  Q  C  P  *  V  I  R  L  C  V  I  L  L  *  F  F  H  S  L  S  P  S  P  I  R  L  S  W  L  L  Q  Y  D  F  C  N  K  R  K  E  E  D  S  K  V  E  L  L  S  V  *  *  V  L  N  C  P  N  S  P  H  S  Y  N  S  I  A  *  K  L  S  C  I  N  F  S  L  L  I  F  L  V  D  F  I  C  V  R  A  *  I  N  R  S  W  K  L  D  Q  T  R  I </second_frame>
            <third_frame>   P  E  M  S  R  G  I  S  *  N  L  R  L  V  I  A  V  *  F  Q  K  *  I  N  I  *  S  N  G  K  *  A  K  Y  F  N  F  S  C  *  K  S  L  F  *  K  K  N  P  *  N  N  L  R  V  Y  L  W  L  V  S  T  C  S  G  Y  I  K  I  P  S  R  S  K  K  L  S  Q  T  Q  I  K  N  P  W  L  F  L  V  S  F  P  D  Y  C  Q  L  E  P  F  *  I  F  *  *  T  I  I  I  S  I  T  F  L  L  W  L  Q  H  F  K  I  K  C  S  L  P  P  L  S  P  N  C  N  E  V  A  N  L  M  *  L  L  L  V  S  S  F  L  S  Q  R  *  L  L  V  *  *  N  V  N  G  A  S  M  *  A  L  S  L  L  T  R  A  N  K  R  I  D  Q  A  G  Y  R  I  Y  L  C  M  Q  L  R  L  E  G  K  D  Y  V  V  Q  E  G  D  I  M  L  F  R  F  N  V  *  L  K  N  S  W  *  R  R  F  H  E  F  L  C  C  V  H  G  C  L  N  H  S  D  F  *  D  S  R  F  C  Y  K  R  F  N  G  E  A  Y  N  L  *  A  S  Q  V  C  E  F  *  G  T  A  T  G  A  D  E  I  D  L  W  F  S  L  S  C  Y  K  S  Q  F  L  A  R  H  V  T  F  N  V  H  R  S  F  D  F  V  *  Y  Y  C  N  S  F  T  P  Y  H  P  P  Q  Y  A  L  V  G  F  C  N  M  I  F  A  I  N  G  K  K  K  I  Q  K  *  N  F  C  Q  F  D  E  F  *  I  V  Q  T  V  R  I  H  I  I  L  *  L  E  S  L  A  A  *  I  S  H  C  S  F  F  L  L  I  S  F  V  *  E  H  K  *  I  D  L  G  S  L  T  K  Q  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44623" stop="44318"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSFTKIITCVVECKRCFYVSTKSTDPCKQENRSSWLQDLSVYAVEVRRKRLCCARRGYNAVPVQCLIEKQLVKEISRIFMLCSRLFEPFRFLRQQILLQEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="52408" e_stop="51999"/>
            <exon e_start="51013" e_stop="50825"/>
            <exon e_start="50698" e_stop="50645"/>
            <exon e_start="49337" e_stop="49227"/>
            <exon e_start="48857" e_stop="48822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.914" e_score="0.980"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.000" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="52408" e_stop="51999" e_length="410"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.914">
            <gDNA_intron_boundary i_start="51998" i_stop="51014" i_length="985"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51013" e_stop="50825" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50824" i_stop="50699" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50698" e_stop="50645" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="49337" e_stop="49227" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49226" i_stop="48858" i_length="369"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48857" e_stop="48822" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52408" stop="51999"/>
              <exon start="51013" stop="50910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52308" stop="51999"/>
              <exon start="51013" stop="50825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52285" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52262" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49227"/>
              <exon start="48857" stop="48822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52262" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52248" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52217" stop="51999"/>
              <exon start="51013" stop="50825"/>
              <exon start="50698" stop="50645"/>
              <exon start="49337" stop="49321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480435" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTCATTTTCCCAAATTTTTGGGCTCAAATACAATTTTGGTGCAATTATTTGGGTAATTTTCTAATTTACATGTAGCGTCGTCGCTGAGTTAAACCCGAGAAATATTTGTAGTTGTAGCACGGCGATAGATAGCCGCAACGCTGTGTGTACCACTCAATAAGCACTTCAACTTGCTAGTGGTAAAATGGCGAGAATGGCTTGCTCTCAGCTTCTTCCTTCCATGGCAATTCCGCTCAAGTCTTCTTTCCTCAATGGTTCTTCTCACCAGTGGTTACGACTCTCAGAATCTACGCATCCTGTGGTACTCATCAAAAGGCGCTTCTCCGTCGCTAAGATAAGCATGAGTTTGCGAGCTGGCATCGTTGGCCTTCCTAATGTCGGCAAGTCCACGCTGTTCAACGCCGTC : GTTGAGAATGGAAAGGCTCAGGCTGCTAATTTTCCTTTTTGCACAATAGAGCCAAATGTAGGGATAGTCGCTGTCCCTGATACACGTCTCCATGTTCTTTCTGATATAAGCAAATCCAAACGAGCGGTCCCGGCTTCGATAGAGTTTGTTGATATTGCTGGACTTGTAAAGGGAGCCAGTCAAGGGGAG : GGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG : GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG : AATGCAGATTGAGAAAAGAATGGAGAAACTCAAAAA</gDNA_template>
            <first_frame> L  F  H  F  P  K  F  L  G  S  N  T  I  L  V  Q  L  F  G  *  F  S  N  L  H  V  A  S  S  L  S  *  T  R  E  I  F  V  V  V  A  R  R  *  I  A  A  T  L  C  V  P  L  N  K  H  F  N  L  L  V  V  K  W  R  E  W  L  A  L  S  F  F  L  P  W  Q  F  R  S  S  L  L  S  S  M  V  L  L  T  S  G  Y  D  S  Q  N  L  R  I  L  W  Y  S  S  K  G  A  S  P  S  L  R  *  A  *  V  C  E  L  A  S  L  A  F  L  M  S  A  S  P  R  C  S  T  P  S :   L  R  M  E  R  L  R  L  L  I  F  L  F  A  Q  *  S  Q  M  *  G  *  S  L  S  L  I  H  V  S  M  F  F  L  I  *  A  N  P  N  E  R  S  R  L  R  *  S  L  L  I  L  L  D  L  *  R  E  P  V  K  G  R :   A  W  G  I  S  S  C  H  I  Y  V  K  W  T  P  Y  F  R :   *  Y  V  V  L  R  T  M  T  L  F  M  *  M  G  R  L  S  Q  K  L  I  L  M  *  S  T  W  N  *  F  S  Q  I  W  I  R :   M  Q  I  E  K  R  M  E  K  L  K   </first_frame>
            <second_frame>  C  F  I  F  P  N  F  W  A  Q  I  Q  F  W  C  N  Y  L  G  N  F  L  I  Y  M  *  R  R  R  *  V  K  P  E  K  Y  L  *  L  *  H  G  D  R  *  P  Q  R  C  V  Y  H  S  I  S  T  S  T  C  *  W  *  N  G  E  N  G  L  L  S  A  S  S  F  H  G  N  S  A  Q  V  F  F  P  Q  W  F  F  S  P  V  V  T  T  L  R  I  Y  A  S  C  G  T  H  Q  K  A  L  L  R  R  *  D  K  H  E  F  A  S  W  H  R  W  P  S  *  C  R  Q  V  H  A  V  Q  R  R   : R  *  E  W  K  G  S  G  C  *  F  S  F  L  H  N  R  A  K  C  R  D  S  R  C  P  *  Y  T  S  P  C  S  F  *  Y  K  Q  I  Q  T  S  G  P  G  F  D  R  V  C  *  Y  C  W  T  C  K  G  S  Q  S  R  G   : G  P  G  E  *  V  L  V  T  Y  T  *  S  G  L  H  T  S   : G  S  T  L  F  *  G  Q  *  H  C  S  C  E  W  E  G  *  A  K  S  *  Y  *  C  N  Q  L  G  I  N  F  L  R  F  G  S   : E  C  R  L  R  K  E  W  R  N  S  K  </second_frame>
            <third_frame>   V  S  F  S  Q  I  F  G  L  K  Y  N  F  G  A  I  I  W  V  I  F  *  F  T  C  S  V  V  A  E  L  N  P  R  N  I  C  S  C  S  T  A  I  D  S  R  N  A  V  C  T  T  Q  *  A  L  Q  L  A  S  G  K  M  A  R  M  A  C  S  Q  L  L  P  S  M  A  I  P  L  K  S  S  F  L  N  G  S  S  H  Q  W  L  R  L  S  E  S  T  H  P  V  V  L  I  K  R  R  F  S  V  A  K  I  S  M  S  L  R  A  G  I  V  G  L  P  N  V  G  K  S  T  L  F  N  A  V  :  V  E  N  G  K  A  Q  A  A  N  F  P  F  C  T  I  E  P  N  V  G  I  V  A  V  P  D  T  R  L  H  V  L  S  D  I  S  K  S  K  R  A  V  P  A  S  I  E  F  V  D  I  A  G  L  V  K  G  A  S  Q  G  E  :  G  L  G  N  K  F  L  S  H  I  R  E  V  D  S  I  L  Q  :  V  V  R  C  F  E  D  N  D  I  V  H  V  N  G  K  V  E  P  K  A  D  I  D  V  I  N  L  E  L  I  F  S  D  L  D  Q  :  N  A  D  *  E  K  N  G  E  T  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52244" stop="51999"/>
                    <exon start="51013" stop="50825"/>
                    <exon start="50698" stop="50645"/>
                    <exon start="49337" stop="49227"/>
                    <exon start="48857" stop="48846"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALQLASGKMARMACSQLLPSMAIPLKSSFLNGSSHQWLRLSESTHPVVLIKRRFSVAKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDTRLHVLSDISKSKRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVEPKADIDVINLELIFSDLDQNAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="50816" e_stop="50645"/>
            <exon e_start="49337" e_stop="49227"/>
            <exon e_start="48850" e_stop="48788"/>
            <exon e_start="48639" e_stop="48263"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50816" e_stop="50645" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50644" i_stop="49338" i_length="1307"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49337" e_stop="49227" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.950" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49226" i_stop="48851" i_length="376"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48850" e_stop="48788" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.989">
            <gDNA_intron_boundary i_start="48787" i_stop="48640" i_length="148"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="48639" e_stop="48263" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50816" stop="50645"/>
              <exon start="49337" stop="49227"/>
              <exon start="48850" stop="48788"/>
              <exon start="48639" stop="48263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340487" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATAACCTAAAGTTTCCTAATATCAATTATTAGTCATGTTTTCACTTATTGTATCATTGCATCAGTGGCATTATAAATTGAAGATACAACAATTTGTTAAATATTTTCTATGGCAGGGCCTGGGGAATAAGTTCTTGTCACATATACGTGAAGTGGACTCCATACTTCAG : GTAGTACGTTGTTTTGAGGACAATGACATTGTTCATGTGAATGGGAAGGTTGAGCCAAAAGCTGATATTGATGTAATCAACTTGGAATTAATTTTCTCAGATTTGGATCAG : ATTGAGAAAAGAATGGAGAAACTCAAAAAAGGTAGAGCTAAAGATTCACAAGCTAAAGTAAAG : GAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATACAACAAGCACTACTGGATGGAAAACCAGCACGATCAGTATCTTTGTCGGAGTTTGAAAAGGATGCTATAACACAACTTTGTCTTCTAACAATGAAGCCTGTCATATTTGTGGCAAATGTAGCGGAATCAGAGGTAGCTGAACCTGAAAATAATCCTCATGTGAAGGAAGTAATTAAAAAAGCTGCTGAGTTAAATTCTGGTGTGGTAACTATTTCAGCGCAGGTCAGTTGACATCTTTCACTTTTCCCTTTTGTATTTGAATCAATCAAAATTCATGCTTATTTCATTTCAGGGGGAGATCTTTATCCTAATGCTCTATTGGAAATTACTTTAATTGTCATATC</gDNA_template>
            <first_frame> S  I  T  *  S  F  L  I  S  I  I  S  H  V  F  T  Y  C  I  I  A  S  V  A  L  *  I  E  D  T  T  I  C  *  I  F  S  M  A  G  P  G  E  *  V  L  V  T  Y  T  *  S  G  L  H  T  S   : G  S  T  L  F  *  G  Q  *  H  C  S  C  E  W  E  G  *  A  K  S  *  Y  *  C  N  Q  L  G  I  N  F  L  R  F  G  S   : D  *  E  K  N  G  E  T  Q  K  R  *  S  *  R  F  T  S  *  S  K   : G  G  S  R  K  V  C  L  G  E  N  T  T  S  T  T  G  W  K  T  S  T  I  S  I  F  V  G  V  *  K  G  C  Y  N  T  T  L  S  S  N  N  E  A  C  H  I  C  G  K  C  S  G  I  R  G  S  *  T  *  K  *  S  S  C  E  G  S  N  *  K  S  C  *  V  K  F  W  C  G  N  Y  F  S  A  G  Q  L  T  S  F  T  F  P  F  C  I  *  I  N  Q  N  S  C  L  F  H  F  R  G  R  S  L  S  *  C  S  I  G  N  Y  F  N  C  H  I </first_frame>
            <second_frame>  Q  *  P  K  V  S  *  Y  Q  L  L  V  M  F  S  L  I  V  S  L  H  Q  W  H  Y  K  L  K  I  Q  Q  F  V  K  Y  F  L  W  Q  G  L  G  N  K  F  L  S  H  I  R  E  V  D  S  I  L  Q  :  V  V  R  C  F  E  D  N  D  I  V  H  V  N  G  K  V  E  P  K  A  D  I  D  V  I  N  L  E  L  I  F  S  D  L  D  Q  :  I  E  K  R  M  E  K  L  K  K  G  R  A  K  D  S  Q  A  K  V  K  :  E  E  A  E  K  S  A  L  E  K  I  Q  Q  A  L  L  D  G  K  P  A  R  S  V  S  L  S  E  F  E  K  D  A  I  T  Q  L  C  L  L  T  M  K  P  V  I  F  V  A  N  V  A  E  S  E  V  A  E  P  E  N  N  P  H  V  K  E  V  I  K  K  A  A  E  L  N  S  G  V  V  T  I  S  A  Q  V  S  *  H  L  S  L  F  P  F  V  F  E  S  I  K  I  H  A  Y  F  I  S  G  G  D  L  Y  P  N  A  L  L  E  I  T  L  I  V  I   </second_frame>
            <third_frame>   N  N  L  K  F  P  N  I  N  Y  *  S  C  F  H  L  L  Y  H  C  I  S  G  I  I  N  *  R  Y  N  N  L  L  N  I  F  Y  G  R  A  W  G  I  S  S  C  H  I  Y  V  K  W  T  P  Y  F  R :   *  Y  V  V  L  R  T  M  T  L  F  M  *  M  G  R  L  S  Q  K  L  I  L  M  *  S  T  W  N  *  F  S  Q  I  W  I  R :   L  R  K  E  W  R  N  S  K  K  V  E  L  K  I  H  K  L  K  *  R :   R  K  Q  K  S  L  P  W  R  K  Y  N  K  H  Y  W  M  E  N  Q  H  D  Q  Y  L  C  R  S  L  K  R  M  L  *  H  N  F  V  F  *  Q  *  S  L  S  Y  L  W  Q  M  *  R  N  Q  R  *  L  N  L  K  I  I  L  M  *  R  K  *  L  K  K  L  L  S  *  I  L  V  W  *  L  F  Q  R  R  S  V  D  I  F  H  F  S  L  L  Y  L  N  Q  S  K  F  M  L  I  S  F  Q  G  E  I  F  I  L  M  L  Y  W  K  L  L  *  L  S  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50794" stop="50645"/>
                    <exon start="49337" stop="49227"/>
                    <exon start="48850" stop="48788"/>
                    <exon start="48639" stop="48376"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQLLVMFSLIVSLHQWHYKLKIQQFVKYFLWQGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVEPKADIDVINLELIFSDLDQIEKRMEKLKKGRAKDSQAKVKEEAEKSALEKIQQALLDGKPARSVSLSEFEKDAITQLCLLTMKPVIFVANVAESEVAEPENNPHVKEVIKKAAELNSGVVTISAQVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="55386" PGL_stop="53109"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55386" e_stop="55294"/>
            <exon e_start="53929" e_stop="53797"/>
            <exon e_start="53705" e_stop="53109"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.216" acc_prob="0.981" e_score="0.947"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55386" e_stop="55294" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.925">
            <gDNA_intron_boundary i_start="55293" i_stop="53930" i_length="1364"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="53929" e_stop="53797" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.216" acc_prob="0.981">
            <gDNA_intron_boundary i_start="53796" i_stop="53706" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.923">
            <gDNA_exon_boundary e_start="53705" e_stop="53109" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55386" stop="55294"/>
              <exon start="53929" stop="53797"/>
              <exon start="53705" stop="53109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598709" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTAATTGATGATCGAAGGATACATGTTGATTTCAGCCAGAGTGTTGCAAAGTTGTGGTCCCAATATCGACGCAAAGACCAAACGGGTAAAG : GAAGAGGTTGCTTCAAATGTGGTTCTCTTGATCACATGGCTAAAGACTGCACTGGTGATGCCACCAAACAGCAGTCGAACTACATTCTAAAAGAAGAAGACAACAAGCAGCACGGTGGAGACGGTAACTCAAG : GTATGAGATGGTATTTGATGAAGATGCTGCTGGAAGTCCAAAAAGAAATAAGAGGGGAAGAGAATTTGAAGGTGGAAAACATTACGAGAATCAGAATCCTAAACGTAGAGAACTTGAAGATGATGGAGCCAGGAAGGATAGAAAAAGAGATGGATATGAACGGCATAGGCTGGAGGATAGAAGTAATGATTATAGAACTGAAGAGAGGCATCGTGGAAGTGGGATGAGAGCAAGTGGAGAGAAGGAAAGGGATTACAGGGGTCGGAACGATCTGGATTATAGAAGAAACACTAATTATGATAACCGTAAGGCTGGGGGGGAGAGACAAGACCATGATAAGAGACCTGCGGATAATGTGAGGCATGTGGACAAGGATTATCGGGGGGAGAGAGAAAAGAGGGATCGGAGAGATGAGGTGGAATATGATGGTGGTCATGCAGATGAAGTTAGGTACAAAGACAATTCACAGAATAGAGGAAGAGGGGAAGAGCAAGATAGAGGAAAACGAAGGTCAGAGGGTGATGATGCTCGTGCTCGTGACCGTGACCGTGATCGCTACCGTGATCATGACCGTCGTCGTGATCGACCTCGTGACCA</gDNA_template>
            <first_frame> L  *  L  M  I  E  G  Y  M  L  I  S  A  R  V  L  Q  S  C  G  P  N  I  D  A  K  T  K  R  V  K  :  E  E  V  A  S  N  V  V  L  L  I  T  W  L  K  T  A  L  V  M  P  P  N  S  S  R  T  T  F  *  K  K  K  T  T  S  S  T  V  E  T  V  T  Q   : G  M  R  W  Y  L  M  K  M  L  L  E  V  Q  K  E  I  R  G  E  E  N  L  K  V  E  N  I  T  R  I  R  I  L  N  V  E  N  L  K  M  M  E  P  G  R  I  E  K  E  M  D  M  N  G  I  G  W  R  I  E  V  M  I  I  E  L  K  R  G  I  V  E  V  G  *  E  Q  V  E  R  R  K  G  I  T  G  V  G  T  I  W  I  I  E  E  T  L  I  M  I  T  V  R  L  G  G  R  D  K  T  M  I  R  D  L  R  I  M  *  G  M  W  T  R  I  I  G  G  R  E  K  R  G  I  G  E  M  R  W  N  M  M  V  V  M  Q  M  K  L  G  T  K  T  I  H  R  I  E  E  E  G  K  S  K  I  E  E  N  E  G  Q  R  V  M  M  L  V  L  V  T  V  T  V  I  A  T  V  I  M  T  V  V  V  I  D  L  V  T  </first_frame>
            <second_frame>  F  N  *  *  S  K  D  T  C  *  F  Q  P  E  C  C  K  V  V  V  P  I  S  T  Q  R  P  N  G  *  R :   K  R  L  L  Q  M  W  F  S  *  S  H  G  *  R  L  H  W  *  C  H  Q  T  A  V  E  L  H  S  K  R  R  R  Q  Q  A  A  R  W  R  R  *  L  K  :  V  *  D  G  I  *  *  R  C  C  W  K  S  K  K  K  *  E  G  K  R  I  *  R  W  K  T  L  R  E  S  E  S  *  T  *  R  T  *  R  *  W  S  Q  E  G  *  K  K  R  W  I  *  T  A  *  A  G  G  *  K  *  *  L  *  N  *  R  E  A  S  W  K  W  D  E  S  K  W  R  E  G  K  G  L  Q  G  S  E  R  S  G  L  *  K  K  H  *  L  *  *  P  *  G  W  G  G  E  T  R  P  *  *  E  T  C  G  *  C  E  A  C  G  Q  G  L  S  G  G  E  R  K  E  G  S  E  R  *  G  G  I  *  W  W  S  C  R  *  S  *  V  Q  R  Q  F  T  E  *  R  K  R  G  R  A  R  *  R  K  T  K  V  R  G  *  *  C  S  C  S  *  P  *  P  *  S  L  P  *  S  *  P  S  S  *  S  T  S  *  P </second_frame>
            <third_frame>   L  I  D  D  R  R  I  H  V  D  F  S  Q  S  V  A  K  L  W  S  Q  Y  R  R  K  D  Q  T  G  K   : G  R  G  C  F  K  C  G  S  L  D  H  M  A  K  D  C  T  G  D  A  T  K  Q  Q  S  N  Y  I  L  K  E  E  D  N  K  Q  H  G  G  D  G  N  S  R :   Y  E  M  V  F  D  E  D  A  A  G  S  P  K  R  N  K  R  G  R  E  F  E  G  G  K  H  Y  E  N  Q  N  P  K  R  R  E  L  E  D  D  G  A  R  K  D  R  K  R  D  G  Y  E  R  H  R  L  E  D  R  S  N  D  Y  R  T  E  E  R  H  R  G  S  G  M  R  A  S  G  E  K  E  R  D  Y  R  G  R  N  D  L  D  Y  R  R  N  T  N  Y  D  N  R  K  A  G  G  E  R  Q  D  H  D  K  R  P  A  D  N  V  R  H  V  D  K  D  Y  R  G  E  R  E  K  R  D  R  R  D  E  V  E  Y  D  G  G  H  A  D  E  V  R  Y  K  D  N  S  Q  N  R  G  R  G  E  E  Q  D  R  G  K  R  R  S  E  G  D  D  A  R  A  R  D  R  D  R  D  R  Y  R  D  H  D  R  R  R  D  R  P  R  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55384" stop="55294"/>
                    <exon start="53929" stop="53797"/>
                    <exon start="53705" stop="53111"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIDDRRIHVDFSQSVAKLWSQYRRKDQTGKGRGCFKCGSLDHMAKDCTGDATKQQSNYILKEEDNKQHGGDGNSRYEMVFDEDAAGSPKRNKRGREFEGGKHYENQNPKRRELEDDGARKDRKRDGYERHRLEDRSNDYRTEERHRGSGMRASGEKERDYRGRNDLDYRRNTNYDNRKAGGERQDHDKRPADNVRHVDKDYRGEREKRDRRDEVEYDGGHADEVRYKDNSQNRGRGEEQDRGKRRSEGDDARARDRDRDRYRDHDRRRDRPRD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="65120" PGL_stop="67480"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65120" e_stop="65316"/>
            <exon e_start="65405" e_stop="65590"/>
            <exon e_start="66336" e_stop="66515"/>
            <exon e_start="67260" e_stop="67480"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.590" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.729" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.124" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65120" e_stop="65316" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="0.590" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65317" i_stop="65404" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65405" e_stop="65590" e_length="186"/>
          </exon>
          <intron i_serial="2" don_prob="0.729" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65591" i_stop="66335" i_length="745"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66336" e_stop="66515" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.124">
            <gDNA_intron_boundary i_start="66516" i_stop="67259" i_length="744"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="67260" e_stop="67480" e_length="221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65120" stop="65316"/>
              <exon start="65405" stop="65590"/>
              <exon start="66336" stop="66421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65127" stop="65316"/>
              <exon start="65405" stop="65590"/>
              <exon start="66336" stop="66515"/>
              <exon start="67260" stop="67445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65144" stop="65316"/>
              <exon start="65405" stop="65590"/>
              <exon start="66336" stop="66515"/>
              <exon start="67260" stop="67453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65147" stop="65316"/>
              <exon start="65405" stop="65590"/>
              <exon start="66336" stop="66515"/>
              <exon start="67260" stop="67306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65151" stop="65316"/>
              <exon start="65405" stop="65590"/>
              <exon start="66336" stop="66515"/>
              <exon start="67260" stop="67345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65152" stop="65316"/>
              <exon start="65405" stop="65590"/>
              <exon start="66336" stop="66393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65165" stop="65316"/>
              <exon start="65405" stop="65590"/>
              <exon start="66336" stop="66515"/>
              <exon start="67260" stop="67480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340103" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATATTGAAAGAAGAAGCAAACCTAACACTCATAAAACAGAGCCACTGTTCTTCTTTACGCAGAGGAGCTAGCAAGATGATTACTGGCGGAAGAAGTTTGATTTCTTCACAGCCGGCGTTTTCAAATGATGCAAAGAAGCTTCTCGTATGCACAGGAAACACCGTTTCTATTTTTAGCACCTCCACAGGCTTACAG : ATTGCTGAATTGGAAGGTCATAGGGGATTGGTAACATCGGTGGTGGTAGTACCATCTACTACTCCGGCAGGCAAACTATTGTGCTACTGCTGGACTTCATCTGAGGATGGTACTATTAAATATTGGGACTTTTCCGTGCCGGAGCTAATGAGAAGTATTGATGTTAAGTTGCCCATTTACTCAATG : GTAATTCCAGGTTTATCATCAGAACTCAGAGAGAGTAGCGAAAAGCCTTCTGATCTTTTTGCATATGTGTCTGTCATAGTGTTGAAAGAACAGCTGGGAGGGAGCTGTGCTTTATGGTGGCAGATAAGGAAGTGTAACTTAACTAAATGTACTTTGGTTGGTGGAGTGACTCTGGCTGAG : AGTAAAAACGCACTATCTATAACATTAAGCTGCTCTGGAAGATACATGGGCGTCTGTGACAAGCGCAAGCTTCGCATTTGGGAAATACCAACTAAAGATTCTGATCATTCAGTGCTTCAGAACATCAGATTACATCATACGAAAACCCTGAGCACTCTAGCTTTTCATCCAACAGATAGAATAGTTTCAGCTGGAGATGTAACAGGAAGGATCTTAATATG</gDNA_template>
            <first_frame> E  Y  *  K  K  K  Q  T  *  H  S  *  N  R  A  T  V  L  L  Y  A  E  E  L  A  R  *  L  L  A  E  E  V  *  F  L  H  S  R  R  F  Q  M  M  Q  R  S  F  S  Y  A  Q  E  T  P  F  L  F  L  A  P  P  Q  A  Y  R :   L  L  N  W  K  V  I  G  D  W  *  H  R  W  W  *  Y  H  L  L  L  R  Q  A  N  Y  C  A  T  A  G  L  H  L  R  M  V  L  L  N  I  G  T  F  P  C  R  S  *  *  E  V  L  M  L  S  C  P  F  T  Q  W :   *  F  Q  V  Y  H  Q  N  S  E  R  V  A  K  S  L  L  I  F  L  H  M  C  L  S  *  C  *  K  N  S  W  E  G  A  V  L  Y  G  G  R  *  G  S  V  T  *  L  N  V  L  W  L  V  E  *  L  W  L  R :   V  K  T  H  Y  L  *  H  *  A  A  L  E  D  T  W  A  S  V  T  S  A  S  F  A  F  G  K  Y  Q  L  K  I  L  I  I  Q  C  F  R  T  S  D  Y  I  I  R  K  P  *  A  L  *  L  F  I  Q  Q  I  E  *  F  Q  L  E  M  *  Q  E  G  S  *  Y  </first_frame>
            <second_frame>  N  I  E  R  R  S  K  P  N  T  H  K  T  E  P  L  F  F  F  T  Q  R  S  *  Q  D  D  Y  W  R  K  K  F  D  F  F  T  A  G  V  F  K  *  C  K  E  A  S  R  M  H  R  K  H  R  F  Y  F  *  H  L  H  R  L  T   : D  C  *  I  G  R  S  *  G  I  G  N  I  G  G  G  S  T  I  Y  Y  S  G  R  Q  T  I  V  L  L  L  D  F  I  *  G  W  Y  Y  *  I  L  G  L  F  R  A  G  A  N  E  K  Y  *  C  *  V  A  H  L  L  N   : G  N  S  R  F  I  I  R  T  Q  R  E  *  R  K  A  F  *  S  F  C  I  C  V  C  H  S  V  E  R  T  A  G  R  E  L  C  F  M  V  A  D  K  E  V  *  L  N  *  M  Y  F  G  W  W  S  D  S  G  *   : E  *  K  R  T  I  Y  N  I  K  L  L  W  K  I  H  G  R  L  *  Q  A  Q  A  S  H  L  G  N  T  N  *  R  F  *  S  F  S  A  S  E  H  Q  I  T  S  Y  E  N  P  E  H  S  S  F  S  S  N  R  *  N  S  F  S  W  R  C  N  R  K  D  L  N  M </second_frame>
            <third_frame>   I  L  K  E  E  A  N  L  T  L  I  K  Q  S  H  C  S  S  L  R  R  G  A  S  K  M  I  T  G  G  R  S  L  I  S  S  Q  P  A  F  S  N  D  A  K  K  L  L  V  C  T  G  N  T  V  S  I  F  S  T  S  T  G  L  Q  :  I  A  E  L  E  G  H  R  G  L  V  T  S  V  V  V  V  P  S  T  T  P  A  G  K  L  L  C  Y  C  W  T  S  S  E  D  G  T  I  K  Y  W  D  F  S  V  P  E  L  M  R  S  I  D  V  K  L  P  I  Y  S  M  :  V  I  P  G  L  S  S  E  L  R  E  S  S  E  K  P  S  D  L  F  A  Y  V  S  V  I  V  L  K  E  Q  L  G  G  S  C  A  L  W  W  Q  I  R  K  C  N  L  T  K  C  T  L  V  G  G  V  T  L  A  E  :  S  K  N  A  L  S  I  T  L  S  C  S  G  R  Y  M  G  V  C  D  K  R  K  L  R  I  W  E  I  P  T  K  D  S  D  H  S  V  L  Q  N  I  R  L  H  H  T  K  T  L  S  T  L  A  F  H  P  T  D  R  I  V  S  A  G  D  V  T  G  R  I  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65122" stop="65316"/>
                    <exon start="65405" stop="65590"/>
                    <exon start="66336" stop="66515"/>
                    <exon start="67260" stop="67478"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILKEEANLTLIKQSHCSSLRRGASKMITGGRSLISSQPAFSNDAKKLLVCTGNTVSIFSTSTGLQIAELEGHRGLVTSVVVVPSTTPAGKLLCYCWTSSEDGTIKYWDFSVPELMRSIDVKLPIYSMVIPGLSSELRESSEKPSDLFAYVSVIVLKEQLGGSCALWWQIRKCNLTKCTLVGGVTLAESKNALSITLSCSGRYMGVCDKRKLRIWEIPTKDSDHSVLQNIRLHHTKTLSTLAFHPTDRIVSAGDVTGRILI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="67916" PGL_stop="75936"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67916" e_stop="68003"/>
            <exon e_start="68074" e_stop="68151"/>
            <exon e_start="68665" e_stop="68805"/>
            <exon e_start="69384" e_stop="69428"/>
            <exon e_start="70297" e_stop="70463"/>
            <exon e_start="70610" e_stop="70688"/>
            <exon e_start="71660" e_stop="71742"/>
            <exon e_start="72032" e_stop="72161"/>
            <exon e_start="72551" e_stop="72683"/>
            <exon e_start="73712" e_stop="73878"/>
            <exon e_start="74317" e_stop="74509"/>
            <exon e_start="75311" e_stop="75936"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.751" acc_prob="0.708" e_score="0.955"/>
          <exon-intron don_prob="0.996" acc_prob="0.808" e_score="0.974"/>
          <exon-intron don_prob="0.969" acc_prob="0.994" e_score="0.957"/>
          <exon-intron don_prob="0.971" acc_prob="0.953" e_score="0.978"/>
          <exon-intron don_prob="0.980" acc_prob="0.937" e_score="0.982"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="0.545" acc_prob="0.997" e_score="0.952"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="67916" e_stop="68003" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.751" acc_prob="0.708">
            <gDNA_intron_boundary i_start="68004" i_stop="68073" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="68074" e_stop="68151" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.808">
            <gDNA_intron_boundary i_start="68152" i_stop="68664" i_length="513"/>
          </intron>
          <exon e_serial="3" e_score="0.957">
            <gDNA_exon_boundary e_start="68665" e_stop="68805" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.994">
            <gDNA_intron_boundary i_start="68806" i_stop="69383" i_length="578"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="69384" e_stop="69428" e_length="45"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.953">
            <gDNA_intron_boundary i_start="69429" i_stop="70296" i_length="868"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="70297" e_stop="70463" e_length="167"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.937">
            <gDNA_intron_boundary i_start="70464" i_stop="70609" i_length="146"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="70610" e_stop="70688" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70689" i_stop="71659" i_length="971"/>
          </intron>
          <exon e_serial="7" e_score="0.952">
            <gDNA_exon_boundary e_start="71660" e_stop="71742" e_length="83"/>
          </exon>
          <intron i_serial="7" don_prob="0.545" acc_prob="0.997">
            <gDNA_intron_boundary i_start="71743" i_stop="72031" i_length="289"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="72032" e_stop="72161" e_length="130"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="72162" i_stop="72550" i_length="389"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="72551" e_stop="72683" e_length="133"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="72684" i_stop="73711" i_length="1028"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="73712" e_stop="73878" e_length="167"/>
          </exon>
          <intron i_serial="10" don_prob="0.962" acc_prob="0.979">
            <gDNA_intron_boundary i_start="73879" i_stop="74316" i_length="438"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="74317" e_stop="74509" e_length="193"/>
          </exon>
          <intron i_serial="11" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74510" i_stop="75310" i_length="801"/>
          </intron>
          <exon e_serial="12" e_score="0.994">
            <gDNA_exon_boundary e_start="75311" e_stop="75936" e_length="626"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67916" stop="68003"/>
              <exon start="68074" stop="68151"/>
              <exon start="68665" stop="68805"/>
              <exon start="69384" stop="69428"/>
              <exon start="70297" stop="70463"/>
              <exon start="70610" stop="70688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67916" stop="68003"/>
              <exon start="68074" stop="68151"/>
              <exon start="68665" stop="68805"/>
              <exon start="69384" stop="69428"/>
              <exon start="70297" stop="70323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70648" stop="70688"/>
              <exon start="71660" stop="71742"/>
              <exon start="72032" stop="72161"/>
              <exon start="72551" stop="72683"/>
              <exon start="73712" stop="73871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71660" stop="71742"/>
              <exon start="72032" stop="72161"/>
              <exon start="72551" stop="72683"/>
              <exon start="73712" stop="73878"/>
              <exon start="74317" stop="74341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71705" stop="71742"/>
              <exon start="72032" stop="72161"/>
              <exon start="72551" stop="72683"/>
              <exon start="73712" stop="73878"/>
              <exon start="74317" stop="74500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71705" stop="71742"/>
              <exon start="72032" stop="72161"/>
              <exon start="72551" stop="72683"/>
              <exon start="73712" stop="73878"/>
              <exon start="74317" stop="74468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71706" stop="71742"/>
              <exon start="72032" stop="72161"/>
              <exon start="72551" stop="72683"/>
              <exon start="73712" stop="73878"/>
              <exon start="74317" stop="74467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71714" stop="71742"/>
              <exon start="72032" stop="72161"/>
              <exon start="72551" stop="72683"/>
              <exon start="73712" stop="73878"/>
              <exon start="74317" stop="74356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72103" stop="72161"/>
              <exon start="72551" stop="72683"/>
              <exon start="73712" stop="73811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72113" stop="72161"/>
              <exon start="72551" stop="72683"/>
              <exon start="73712" stop="73878"/>
              <exon start="74317" stop="74509"/>
              <exon start="75311" stop="75385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72113" stop="72161"/>
              <exon start="72551" stop="72683"/>
              <exon start="73712" stop="73878"/>
              <exon start="74317" stop="74376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73796" stop="73878"/>
              <exon start="74317" stop="74509"/>
              <exon start="75311" stop="75936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73840" stop="73878"/>
              <exon start="74317" stop="74509"/>
              <exon start="75311" stop="75861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422895" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTAGATACTGGGAAGCAGAAATTTCTCCCGCGAATAGGATCCCCCCTTTTGTATTTTACCATCTCATCGGATCCTTCTCTGTCCTCT : ATATCTTGTGCAGATAACCGAATTCACCTTCTTAAAATGCCTTCGATGGAGGTATTGAGGTCCATTCAAGGAATCAAG : CTTCGCAGCACGGTCTTGGATATGTCTGATGGCTCATCTGAAGGAATTGTTTTCGACTCTGCCACGGGGCTAGTTGCCATATGTTCAGAAAATTACTGTATCCAGTTCTATAGCTTGTTTGATGACCGTGAGGTTTCTGAG : GTTCAAGTTTGTGAAAGAAGCCACCAACCTGCTGATGAAGTCACG : GTGGTAGTGGATTTGGTCGCCCTTTCTCCAGAGGGTTCCATCATGATTACGGTAGAAACCAGGTTTGCTGAAGAAGGAATAGGAGGTCTTGTAAGTTTGAAGTTCTGGTCATGCAGCTCTTCAAACAAAGAATTCAGCTTATCCACAGTGGTCTATGAGCCCCACAG : AGATTCTGGTATTTCGTCCATTGCTTTCCATCCTTTGCGTCACATGGCTGTTACCACCTCACAGGGTGCTGATTTCAAG : GTTTGGATCGGCAGTCAGGAGATGCAACAAAAAGATCAGATGCAGAACGCTGGATGGACATGCCATTCTGTTGGTTCCTATAA : GAAAAAGCCAATGACAGCTGCTGCCTTTTCTGGAGATGGTTCTGTTCTGGCTGTAGCTGCAGAAAAAGTTATTACATTGTGGGATCCGGAGAGGAATATTCTTGTAGCTACAGTTGGGGAGAGTCTTGAG : CCAATCTCTTCCTTAGCATTTATTGGGAAGTCAGAGTATGTGGTAACCACATCGCAAGGTTCTAAGGCTCAAGTATCAGTGTGGAGCATGTCAAAGCTGTCTGTATCATGGTCTTACAAACTTAAGATAGAAG : CTGTAACTTGTGCGATGGATGATTCCTTGTTTGCCGTCCTGGCCCTTCTCCCAAAGCCAGTTGGACCTGTGATGTCTAATGAAGCCACAACTCTGGATGGCGATGGAGTGATCTTGTTATTCAGGGCCACAGATCATGTTCCCGTAGGGATCTGGTTTGTAAGAAAG : GCAAAAGGTGCTTCACTTGCTTTCATTCGCGGAAGTCCTAAGTCAGAGGATGATGTTACTGATGGCAGATCAGTGCAGTTGCTATTAGCTTACCTCAGCGTTGATCATGAATATATGCTTTTTGATCCACTCGACGGCCACACCCATATACATAAGATAAGCCGAGGAAATCTTGCTGATCTTGAGGAAACAG : GGAAGTTCGGATATGCATCTCTGTACGGGGACCTACCAGACTTTAGCTTAGAGAGAAAACAAGCTGCATCGATCACATCAGTACCATCAGAAAGATATTGGGAGACGCTATTCAGTGGACCATCTCACAATCTTCCTCCTCTTGCTAAATTGTGTTCCACATTCCTGGAATCATTACTACAGAAGAGTAGTGCAGTTGAGTGATTGGCAGTAGTGTCCGGTTGAGCTTTGTTGCAAGGCAGACTTGCTAATCTATGCTCATCGATGAAACGACAACATTGTTGTTAGGCTTGATCCCATTGTAGCCGAGAGAGAGCTGCCTGACATGCACATGCACATGCACATAGTAATACTAGCTCGAAAGTGTGAACAGTGGGGTCGACTTATAATCTGGTCTAAGAACGAGCCAGCCCGTTCAGTTAAAGCTTTCGAGTTCAAGAAAAAGATGCCCTGATCGAGTGGGTTTAAAATTTTGGTAGCACGATTTGATGTGTCGTCTGGATATTGAATTTTTTGTAGCTTGCAACTTATTGAGCCTGCAGGGCTAAGTAGGCATACTCAATACTGAATAGATGTTCTTTTTTGACAATATTTGGTCATGTGTTGTGTTTAATTATAACATTTATA</gDNA_template>
            <first_frame> V  R  Y  W  E  A  E  I  S  P  A  N  R  I  P  P  F  V  F  Y  H  L  I  G  S  F  S  V  L   : Y  I  L  C  R  *  P  N  S  P  S  *  N  A  F  D  G  G  I  E  V  H  S  R  N  Q   : A  S  Q  H  G  L  G  Y  V  *  W  L  I  *  R  N  C  F  R  L  C  H  G  A  S  C  H  M  F  R  K  L  L  Y  P  V  L  *  L  V  *  *  P  *  G  F  *   : G  S  S  L  *  K  K  P  P  T  C  *  *  S  H   : G  G  S  G  F  G  R  P  F  S  R  G  F  H  H  D  Y  G  R  N  Q  V  C  *  R  R  N  R  R  S  C  K  F  E  V  L  V  M  Q  L  F  K  Q  R  I  Q  L  I  H  S  G  L  *  A  P  Q  :  R  F  W  Y  F  V  H  C  F  P  S  F  A  S  H  G  C  Y  H  L  T  G  C  *  F  Q   : G  L  D  R  Q  S  G  D  A  T  K  R  S  D  A  E  R  W  M  D  M  P  F  C  W  F  L  *  :  E  K  A  N  D  S  C  C  L  F  W  R  W  F  C  S  G  C  S  C  R  K  S  Y  Y  I  V  G  S  G  E  E  Y  S  C  S  Y  S  W  G  E  S  *   : A  N  L  F  L  S  I  Y  W  E  V  R  V  C  G  N  H  I  A  R  F  *  G  S  S  I  S  V  E  H  V  K  A  V  C  I  M  V  L  Q  T  *  D  R  S :   C  N  L  C  D  G  *  F  L  V  C  R  P  G  P  S  P  K  A  S  W  T  C  D  V  *  *  S  H  N  S  G  W  R  W  S  D  L  V  I  Q  G  H  R  S  C  S  R  R  D  L  V  C  K  K   : G  K  R  C  F  T  C  F  H  S  R  K  S  *  V  R  G  *  C  Y  *  W  Q  I  S  A  V  A  I  S  L  P  Q  R  *  S  *  I  Y  A  F  *  S  T  R  R  P  H  P  Y  T  *  D  K  P  R  K  S  C  *  S  *  G  N  R :   E  V  R  I  C  I  S  V  R  G  P  T  R  L  *  L  R  E  K  T  S  C  I  D  H  I  S  T  I  R  K  I  L  G  D  A  I  Q  W  T  I  S  Q  S  S  S  S  C  *  I  V  F  H  I  P  G  I  I  T  T  E  E  *  C  S  *  V  I  G  S  S  V  R  L  S  F  V  A  R  Q  T  C  *  S  M  L  I  D  E  T  T  T  L  L  L  G  L  I  P  L  *  P  R  E  S  C  L  T  C  T  C  T  C  T  *  *  Y  *  L  E  S  V  N  S  G  V  D  L  *  S  G  L  R  T  S  Q  P  V  Q  L  K  L  S  S  S  R  K  R  C  P  D  R  V  G  L  K  F  W  *  H  D  L  M  C  R  L  D  I  E  F  F  V  A  C  N  L  L  S  L  Q  G  *  V  G  I  L  N  T  E  *  M  F  F  F  D  N  I  W  S  C  V  V  F  N  Y  N  I  Y  </first_frame>
            <second_frame>  L  D  T  G  K  Q  K  F  L  P  R  I  G  S  P  L  L  Y  F  T  I  S  S  D  P  S  L  S  S  :  I  S  C  A  D  N  R  I  H  L  L  K  M  P  S  M  E  V  L  R  S  I  Q  G  I  K  :  L  R  S  T  V  L  D  M  S  D  G  S  S  E  G  I  V  F  D  S  A  T  G  L  V  A  I  C  S  E  N  Y  C  I  Q  F  Y  S  L  F  D  D  R  E  V  S  E  :  V  Q  V  C  E  R  S  H  Q  P  A  D  E  V  T  :  V  V  V  D  L  V  A  L  S  P  E  G  S  I  M  I  T  V  E  T  R  F  A  E  E  G  I  G  G  L  V  S  L  K  F  W  S  C  S  S  S  N  K  E  F  S  L  S  T  V  V  Y  E  P  H  R :   D  S  G  I  S  S  I  A  F  H  P  L  R  H  M  A  V  T  T  S  Q  G  A  D  F  K  :  V  W  I  G  S  Q  E  M  Q  Q  K  D  Q  M  Q  N  A  G  W  T  C  H  S  V  G  S  Y  K :   K  K  P  M  T  A  A  A  F  S  G  D  G  S  V  L  A  V  A  A  E  K  V  I  T  L  W  D  P  E  R  N  I  L  V  A  T  V  G  E  S  L  E  :  P  I  S  S  L  A  F  I  G  K  S  E  Y  V  V  T  T  S  Q  G  S  K  A  Q  V  S  V  W  S  M  S  K  L  S  V  S  W  S  Y  K  L  K  I  E   : A  V  T  C  A  M  D  D  S  L  F  A  V  L  A  L  L  P  K  P  V  G  P  V  M  S  N  E  A  T  T  L  D  G  D  G  V  I  L  L  F  R  A  T  D  H  V  P  V  G  I  W  F  V  R  K  :  A  K  G  A  S  L  A  F  I  R  G  S  P  K  S  E  D  D  V  T  D  G  R  S  V  Q  L  L  L  A  Y  L  S  V  D  H  E  Y  M  L  F  D  P  L  D  G  H  T  H  I  H  K  I  S  R  G  N  L  A  D  L  E  E  T   : G  K  F  G  Y  A  S  L  Y  G  D  L  P  D  F  S  L  E  R  K  Q  A  A  S  I  T  S  V  P  S  E  R  Y  W  E  T  L  F  S  G  P  S  H  N  L  P  P  L  A  K  L  C  S  T  F  L  E  S  L  L  Q  K  S  S  A  V  E  *  L  A  V  V  S  G  *  A  L  L  Q  G  R  L  A  N  L  C  S  S  M  K  R  Q  H  C  C  *  A  *  S  H  C  S  R  E  R  A  A  *  H  A  H  A  H  A  H  S  N  T  S  S  K  V  *  T  V  G  S  T  Y  N  L  V  *  E  R  A  S  P  F  S  *  S  F  R  V  Q  E  K  D  A  L  I  E  W  V  *  N  F  G  S  T  I  *  C  V  V  W  I  L  N  F  L  *  L  A  T  Y  *  A  C  R  A  K  *  A  Y  S  I  L  N  R  C  S  F  L  T  I  F  G  H  V  L  C  L  I  I  T  F  I </second_frame>
            <third_frame>   *  I  L  G  S  R  N  F  S  R  E  *  D  P  P  F  C  I  L  P  S  H  R  I  L  L  C  P  L :   Y  L  V  Q  I  T  E  F  T  F  L  K  C  L  R  W  R  Y  *  G  P  F  K  E  S  S :   F  A  A  R  S  W  I  C  L  M  A  H  L  K  E  L  F  S  T  L  P  R  G  *  L  P  Y  V  Q  K  I  T  V  S  S  S  I  A  C  L  M  T  V  R  F  L  R :   F  K  F  V  K  E  A  T  N  L  L  M  K  S  R :   W  *  W  I  W  S  P  F  L  Q  R  V  P  S  *  L  R  *  K  P  G  L  L  K  K  E  *  E  V  L  *  V  *  S  S  G  H  A  A  L  Q  T  K  N  S  A  Y  P  Q  W  S  M  S  P  T   : E  I  L  V  F  R  P  L  L  S  I  L  C  V  T  W  L  L  P  P  H  R  V  L  I  S  R :   F  G  S  A  V  R  R  C  N  K  K  I  R  C  R  T  L  D  G  H  A  I  L  L  V  P  I   : R  K  S  Q  *  Q  L  L  P  F  L  E  M  V  L  F  W  L  *  L  Q  K  K  L  L  H  C  G  I  R  R  G  I  F  L  *  L  Q  L  G  R  V  L  S :   Q  S  L  P  *  H  L  L  G  S  Q  S  M  W  *  P  H  R  K  V  L  R  L  K  Y  Q  C  G  A  C  Q  S  C  L  Y  H  G  L  T  N  L  R  *  K  :  L  *  L  V  R  W  M  I  P  C  L  P  S  W  P  F  S  Q  S  Q  L  D  L  *  C  L  M  K  P  Q  L  W  M  A  M  E  *  S  C  Y  S  G  P  Q  I  M  F  P  *  G  S  G  L  *  E  R :   Q  K  V  L  H  L  L  S  F  A  E  V  L  S  Q  R  M  M  L  L  M  A  D  Q  C  S  C  Y  *  L  T  S  A  L  I  M  N  I  C  F  L  I  H  S  T  A  T  P  I  Y  I  R  *  A  E  E  I  L  L  I  L  R  K  Q  :  G  S  S  D  M  H  L  C  T  G  T  Y  Q  T  L  A  *  R  E  N  K  L  H  R  S  H  Q  Y  H  Q  K  D  I  G  R  R  Y  S  V  D  H  L  T  I  F  L  L  L  L  N  C  V  P  H  S  W  N  H  Y  Y  R  R  V  V  Q  L  S  D  W  Q  *  C  P  V  E  L  C  C  K  A  D  L  L  I  Y  A  H  R  *  N  D  N  I  V  V  R  L  D  P  I  V  A  E  R  E  L  P  D  M  H  M  H  M  H  I  V  I  L  A  R  K  C  E  Q  W  G  R  L  I  I  W  S  K  N  E  P  A  R  S  V  K  A  F  E  F  K  K  K  M  P  *  S  S  G  F  K  I  L  V  A  R  F  D  V  S  S  G  Y  *  I  F  C  S  L  Q  L  I  E  P  A  G  L  S  R  H  T  Q  Y  *  I  D  V  L  F  *  Q  Y  L  V  M  C  C  V  *  L  *  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67917" stop="68003"/>
                    <exon start="68074" stop="68151"/>
                    <exon start="68665" stop="68805"/>
                    <exon start="69384" stop="69428"/>
                    <exon start="70297" stop="70463"/>
                    <exon start="70610" stop="70688"/>
                    <exon start="71660" stop="71742"/>
                    <exon start="72032" stop="72161"/>
                    <exon start="72551" stop="72683"/>
                    <exon start="73712" stop="73878"/>
                    <exon start="74317" stop="74509"/>
                    <exon start="75311" stop="75513"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1503</number_coding_nucleotides>
                  <number_encoded_amino_acids>501</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDTGKQKFLPRIGSPLLYFTISSDPSLSSISCADNRIHLLKMPSMEVLRSIQGIKLRSTVLDMSDGSSEGIVFDSATGLVAICSENYCIQFYSLFDDREVSEVQVCERSHQPADEVTVVVDLVALSPEGSIMITVETRFAEEGIGGLVSLKFWSCSSSNKEFSLSTVVYEPHRDSGISSIAFHPLRHMAVTTSQGADFKVWIGSQEMQQKDQMQNAGWTCHSVGSYKKKPMTAAAFSGDGSVLAVAAEKVITLWDPERNILVATVGESLEPISSLAFIGKSEYVVTTSQGSKAQVSVWSMSKLSVSWSYKLKIEAVTCAMDDSLFAVLALLPKPVGPVMSNEATTLDGDGVILLFRATDHVPVGIWFVRKAKGASLAFIRGSPKSEDDVTDGRSVQLLLAYLSVDHEYMLFDPLDGHTHIHKISRGNLADLEETGKFGYASLYGDLPDFSLERKQAASITSVPSERYWETLFSGPSHNLPPLAKLCSTFLESLLQKSSAVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="75960" PGL_stop="75437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75960" e_stop="75437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="75960" e_stop="75437" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75960" stop="75437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAAATAGCAACTCTATTGCGCTTATAAATGTTATAATTAAACACAACACATGACCAAATATTGTCAAAAAAGAACATCTATTCAGTATTGAGTATGCCTACTTAGCCCTGCAGGCTCAATAAGTTGCAAGCTACAAAAAATTCAATATCCAGACGACACATCAAATCGTGCTACCAAAATTTTAAACCCACTCGATCAGGGCATCTTTTTCTTGAACTCGAAAGCTTTAACTGAACGGGCTGGCTCGTTCTTAGACCAGATTATAAGTCGACCCCACTGTTCACACTTTCGAGCTAGTATTACTATGTGCATGTGCATGTGCATGTCAGGCAGCTCTCTCTCGGCTACAATGGGATCAAGCCTAACAACAATGTTGTCGTTTCATCGATGAGCATAGATTAGCAAGTCTGCCTTGCAACAAAGCTCAACCGGACACTACTGCCAATCACTCAACTGCACTACTCTTCTGTAGTAATGATTCCAGGAATGTGGAACACAATTTAGCAAGAGGAGGAAGATTGT</gDNA_template>
            <first_frame> F  K  *  Q  L  Y  C  A  Y  K  C  Y  N  *  T  Q  H  M  T  K  Y  C  Q  K  R  T  S  I  Q  Y  *  V  C  L  L  S  P  A  G  S  I  S  C  K  L  Q  K  I  Q  Y  P  D  D  T  S  N  R  A  T  K  I  L  N  P  L  D  Q  G  I  F  F  L  N  S  K  A  L  T  E  R  A  G  S  F  L  D  Q  I  I  S  R  P  H  C  S  H  F  R  A  S  I  T  M  C  M  C  M  C  M  S  G  S  S  L  S  A  T  M  G  S  S  L  T  T  M  L  S  F  H  R  *  A  *  I  S  K  S  A  L  Q  Q  S  S  T  G  H  Y  C  Q  S  L  N  C  T  T  L  L  *  *  *  F  Q  E  C  G  T  Q  F  S  K  R  R  K  I   </first_frame>
            <second_frame>  L  N  S  N  S  I  A  L  I  N  V  I  I  K  H  N  T  *  P  N  I  V  K  K  E  H  L  F  S  I  E  Y  A  Y  L  A  L  Q  A  Q  *  V  A  S  Y  K  K  F  N  I  Q  T  T  H  Q  I  V  L  P  K  F  *  T  H  S  I  R  A  S  F  S  *  T  R  K  L  *  L  N  G  L  A  R  S  *  T  R  L  *  V  D  P  T  V  H  T  F  E  L  V  L  L  C  A  C  A  C  A  C  Q  A  A  L  S  R  L  Q  W  D  Q  A  *  Q  Q  C  C  R  F  I  D  E  H  R  L  A  S  L  P  C  N  K  A  Q  P  D  T  T  A  N  H  S  T  A  L  L  F  C  S  N  D  S  R  N  V  E  H  N  L  A  R  G  G  R  L  </second_frame>
            <third_frame>   *  I  A  T  L  L  R  L  *  M  L  *  L  N  T  T  H  D  Q  I  L  S  K  K  N  I  Y  S  V  L  S  M  P  T  *  P  C  R  L  N  K  L  Q  A  T  K  N  S  I  S  R  R  H  I  K  S  C  Y  Q  N  F  K  P  T  R  S  G  H  L  F  L  E  L  E  S  F  N  *  T  G  W  L  V  L  R  P  D  Y  K  S  T  P  L  F  T  L  S  S  *  Y  Y  Y  V  H  V  H  V  H  V  R  Q  L  S  L  G  Y  N  G  I  K  P  N  N  N  V  V  V  S  S  M  S  I  D  *  Q  V  C  L  A  T  K  L  N  R  T  L  L  P  I  T  Q  L  H  Y  S  S  V  V  M  I  P  G  M  W  N  T  I  *  Q  E  E  E  D  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75867" stop="75568"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCLLSPAGSISCKLQKIQYPDDTSNRATKILNPLDQGIFFLNSKALTERAGSFLDQIISRPHCSHFRASITMCMCMCMSGSSLSATMGSSLTTMLSFHR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="78229" PGL_stop="78738"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78229" e_stop="78738"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="78229" e_stop="78738" e_length="510"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78229" stop="78738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78351" stop="78646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78351" stop="78646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAATGTCGGTCATGCTATGCAATTAGTTGATAAAATGGAGGAATATGGATATCCAACAAATACTGTGACTTACAATTCTCTTATAAGAGGACTTTGTATGAGGGGGAACCTGAACAAGAGCCTGCAATTTGTCGAAAAGTTGATTCAGAAAGGGTTGGTACCAAATGCATATACGTACTCTATATTGCTTGAGGCTAGTTATAAAGAAAAAGGGGTTAATGAAGCAATGTTACTTTTAGACAATATTATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTTCTCTTAACTGGGCTGTGCAAAGAAGGAAGAATAGATGAAGCTAAACAATTCTTTAGAAACTTGCCATCAAAAGGGTTTAATCCTAACGTTGTCAGCTATAATATCTTGTTGAGGAGCTTGTGTTTTGAAGGACGTTGGGAGGAAGCGAATGAGTTTCTGGCAGAGATGGTTGGAGAAGATCGTTCTCCATCGATTGTAACGTACAATATATTGATCAGT</gDNA_template>
            <first_frame> G  N  V  G  H  A  M  Q  L  V  D  K  M  E  E  Y  G  Y  P  T  N  T  V  T  Y  N  S  L  I  R  G  L  C  M  R  G  N  L  N  K  S  L  Q  F  V  E  K  L  I  Q  K  G  L  V  P  N  A  Y  T  Y  S  I  L  L  E  A  S  Y  K  E  K  G  V  N  E  A  M  L  L  L  D  N  I  I  A  K  G  G  K  P  N  L  V  S  Y  N  V  L  L  T  G  L  C  K  E  G  R  I  D  E  A  K  Q  F  F  R  N  L  P  S  K  G  F  N  P  N  V  V  S  Y  N  I  L  L  R  S  L  C  F  E  G  R  W  E  E  A  N  E  F  L  A  E  M  V  G  E  D  R  S  P  S  I  V  T  Y  N  I  L  I  S </first_frame>
            <second_frame>  E  M  S  V  M  L  C  N  *  L  I  K  W  R  N  M  D  I  Q  Q  I  L  *  L  T  I  L  L  *  E  D  F  V  *  G  G  T  *  T  R  A  C  N  L  S  K  S  *  F  R  K  G  W  Y  Q  M  H  I  R  T  L  Y  C  L  R  L  V  I  K  K  K  G  L  M  K  Q  C  Y  F  *  T  I  L  L  P  R  V  E  S  L  I  W  L  V  T  M  F  S  *  L  G  C  A  K  K  E  E  *  M  K  L  N  N  S  L  E  T  C  H  Q  K  G  L  I  L  T  L  S  A  I  I  S  C  *  G  A  C  V  L  K  D  V  G  R  K  R  M  S  F  W  Q  R  W  L  E  K  I  V  L  H  R  L  *  R  T  I  Y  *  S   </second_frame>
            <third_frame>   K  C  R  S  C  Y  A  I  S  *  *  N  G  G  I  W  I  S  N  K  Y  C  D  L  Q  F  S  Y  K  R  T  L  Y  E  G  E  P  E  Q  E  P  A  I  C  R  K  V  D  S  E  R  V  G  T  K  C  I  Y  V  L  Y  I  A  *  G  *  L  *  R  K  R  G  *  *  S  N  V  T  F  R  Q  Y  Y  C  Q  G  W  K  A  *  F  G  *  L  Q  C  S  L  N  W  A  V  Q  R  R  K  N  R  *  S  *  T  I  L  *  K  L  A  I  K  R  V  *  S  *  R  C  Q  L  *  Y  L  V  E  E  L  V  F  *  R  T  L  G  G  S  E  *  V  S  G  R  D  G  W  R  R  S  F  S  I  D  C  N  V  Q  Y  I  D  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78229" stop="78738"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNVGHAMQLVDKMEEYGYPTNTVTYNSLIRGLCMRGNLNKSLQFVEKLIQKGLVPNAYTYSILLEASYKEKGVNEAMLLLDNIIAKGGKPNLVSYNVLLTGLCKEGRIDEAKQFFRNLPSKGFNPNVVSYNILLRSLCFEGRWEEANEFLAEMVGEDRSPSIVTYNILIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="79113" PGL_stop="79769"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79113" e_stop="79769"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="79113" e_stop="79769" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79113" stop="79769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79114" stop="79769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79499" stop="79764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACGGATTTACTCCAGACTCTTACACCTATTCTTCATTGATCAGAGGATTATGCTTGGAAAAGATGTTGGTGGCTGCTGTCGATGTATTCTACATGATGGAAGAAAATGGATATAGGCCTGATGTTGACAATTTCAATGCGCTTGTGCTTGGACTATGCAAATCCAAAAGAACAGACTTGTCATTAAAGGTATTTGAGGACATGATCAGCAAAGGTTATATGCCTAATGAGATAACATATACCATTATAGTCGAAGGCATCATCCATGAAGATCACAAGGAGCTTGCATCAGTAGTCCTAAGGGAACTGCACCGGAAAGAAGTAATAAGTAGAAATACTGTTGAAAGACTTGCTATGCAATATGAGCTTGAAGATATGGCAGTATGCTGATCTTTCACAAAACCAATGGCTTGTGGTCACAGGATGAGAAACTAACAAAGGTTCTTCATTAGCAAATGCTAAATACACCAAATAAACAAAGTTATTCTCATGCTGTATGTCAGATGGTAACTTTACACAACTAATAAACCTTCGGGATAATTGGTTTTCAGATATGGTAGTTGATTCATAGTAGGCTTCAAATAGGTGAGTGGTGAAACTTGTCAATTCTCACTAGCTTACTCTTGCTACTCAATTGCTGTTACAAAAAAAGTTGT</gDNA_template>
            <first_frame> P  R  I  Y  S  R  L  L  H  L  F  F  I  D  Q  R  I  M  L  G  K  D  V  G  G  C  C  R  C  I  L  H  D  G  R  K  W  I  *  A  *  C  *  Q  F  Q  C  A  C  A  W  T  M  Q  I  Q  K  N  R  L  V  I  K  G  I  *  G  H  D  Q  Q  R  L  Y  A  *  *  D  N  I  Y  H  Y  S  R  R  H  H  P  *  R  S  Q  G  A  C  I  S  S  P  K  G  T  A  P  E  R  S  N  K  *  K  Y  C  *  K  T  C  Y  A  I  *  A  *  R  Y  G  S  M  L  I  F  H  K  T  N  G  L  W  S  Q  D  E  K  L  T  K  V  L  H  *  Q  M  L  N  T  P  N  K  Q  S  Y  S  H  A  V  C  Q  M  V  T  L  H  N  *  *  T  F  G  I  I  G  F  Q  I  W  *  L  I  H  S  R  L  Q  I  G  E  W  *  N  L  S  I  L  T  S  L  L  L  L  L  N  C  C  Y  K  K  S  C </first_frame>
            <second_frame>  H  G  F  T  P  D  S  Y  T  Y  S  S  L  I  R  G  L  C  L  E  K  M  L  V  A  A  V  D  V  F  Y  M  M  E  E  N  G  Y  R  P  D  V  D  N  F  N  A  L  V  L  G  L  C  K  S  K  R  T  D  L  S  L  K  V  F  E  D  M  I  S  K  G  Y  M  P  N  E  I  T  Y  T  I  I  V  E  G  I  I  H  E  D  H  K  E  L  A  S  V  V  L  R  E  L  H  R  K  E  V  I  S  R  N  T  V  E  R  L  A  M  Q  Y  E  L  E  D  M  A  V  C  *  S  F  T  K  P  M  A  C  G  H  R  M  R  N  *  Q  R  F  F  I  S  K  C  *  I  H  Q  I  N  K  V  I  L  M  L  Y  V  R  W  *  L  Y  T  T  N  K  P  S  G  *  L  V  F  R  Y  G  S  *  F  I  V  G  F  K  *  V  S  G  E  T  C  Q  F  S  L  A  Y  S  C  Y  S  I  A  V  T  K  K  V   </second_frame>
            <third_frame>   T  D  L  L  Q  T  L  T  P  I  L  H  *  S  E  D  Y  A  W  K  R  C  W  W  L  L  S  M  Y  S  T  *  W  K  K  M  D  I  G  L  M  L  T  I  S  M  R  L  C  L  D  Y  A  N  P  K  E  Q  T  C  H  *  R  Y  L  R  T  *  S  A  K  V  I  C  L  M  R  *  H  I  P  L  *  S  K  A  S  S  M  K  I  T  R  S  L  H  Q  *  S  *  G  N  C  T  G  K  K  *  *  V  E  I  L  L  K  D  L  L  C  N  M  S  L  K  I  W  Q  Y  A  D  L  S  Q  N  Q  W  L  V  V  T  G  *  E  T  N  K  G  S  S  L  A  N  A  K  Y  T  K  *  T  K  L  F  S  C  C  M  S  D  G  N  F  T  Q  L  I  N  L  R  D  N  W  F  S  D  M  V  V  D  S  *  *  A  S  N  R  *  V  V  K  L  V  N  S  H  *  L  T  L  A  T  Q  L  L  L  Q  K  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79114" stop="79503"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGFTPDSYTYSSLIRGLCLEKMLVAAVDVFYMMEENGYRPDVDNFNALVLGLCKSKRTDLSLKVFEDMISKGYMPNEITYTIIVEGIIHEDHKELASVVLRELHRKEVISRNTVERLAMQYELEDMAVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="82198" PGL_stop="80531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82198" e_stop="82141"/>
            <exon e_start="81012" e_stop="80531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82198" e_stop="82141" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="82140" i_stop="81013" i_length="1128"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81012" e_stop="80531" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82198" stop="82141"/>
              <exon start="81012" stop="80637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82197" stop="82141"/>
              <exon start="81012" stop="80637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82196" stop="82141"/>
              <exon start="81012" stop="80629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82196" stop="82141"/>
              <exon start="81012" stop="80692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82193" stop="82141"/>
              <exon start="81012" stop="80599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82193" stop="82141"/>
              <exon start="81012" stop="80660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82192" stop="82141"/>
              <exon start="81012" stop="80637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82181" stop="82141"/>
              <exon start="81012" stop="80773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82160" stop="82141"/>
              <exon start="81012" stop="80531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82160" stop="82141"/>
              <exon start="81012" stop="80531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80871" stop="80637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80870" stop="80637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAAGACGAGGTAAAGAGAGAGTCGGCGGTGAATTTTGAGCAAGCATGAGAGCAAAG : TGGAAGAAGAAGCGTATGAGGAGACTGAAAAGGAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGAGCAGCAGCAGGGGTCCAGATGCCTACTGTGGTTTCTTGGTTGAAACTGCTGCTTTTTATAATCGCTGTCCATCTCTGTGGCAGCTCCAAAGAATGGAGGTTGTCCGTTGTTTGAAGCTGTGCATTAGTTAATTTACTATGTTCTATGGAGGAGCTTAGTTTTAGTTTTAAGCATTGGTAGTAAGAATGTTGGTTTGTGTTGGATATATGTGAGTTATATTGAATGTTCTCTTTCAAGCTGACGTTTTTAAGAGGATTTCTATTTGTTTGGGGTTACATTTCATTTGAATAAATTTTGGCTTTGAACGTTATTACTTCATGTGATGTTCTGATGATGTACAAGTGTGAAGTGAAACCCTGGTTGGTTTTGATCTAGTATGATCATTCTTGTGCTTGCTTGGTTCAAGAATATCAAG</gDNA_template>
            <first_frame> R  K  T  R  *  R  E  S  R  R  *  I  L  S  K  H  E  S  K   : V  E  E  E  A  Y  E  E  T  E  K  E  A  Q  K  D  E  T  E  I  *  V  E  Q  Q  Q  G  S  R  C  L  L  W  F  L  G  *  N  C  C  F  L  *  S  L  S  I  S  V  A  A  P  K  N  G  G  C  P  L  F  E  A  V  H  *  L  I  Y  Y  V  L  W  R  S  L  V  L  V  L  S  I  G  S  K  N  V  G  L  C  W  I  Y  V  S  Y  I  E  C  S  L  S  S  *  R  F  *  E  D  F  Y  L  F  G  V  T  F  H  L  N  K  F  W  L  *  T  L  L  L  H  V  M  F  *  *  C  T  S  V  K  *  N  P  G  W  F  *  S  S  M  I  I  L  V  L  A  W  F  K  N  I  K </first_frame>
            <second_frame>  G  R  R  G  K  E  R  V  G  G  E  F  *  A  S  M  R  A  K  :  W  K  K  K  R  M  R  R  L  K  R  K  R  R  K  M  R  Q  R  S  K  *  S  S  S  R  G  P  D  A  Y  C  G  F  L  V  E  T  A  A  F  Y  N  R  C  P  S  L  W  Q  L  Q  R  M  E  V  V  R  C  L  K  L  C  I  S  *  F  T  M  F  Y  G  G  A  *  F  *  F  *  A  L  V  V  R  M  L  V  C  V  G  Y  M  *  V  I  L  N  V  L  F  Q  A  D  V  F  K  R  I  S  I  C  L  G  L  H  F  I  *  I  N  F  G  F  E  R  Y  Y  F  M  *  C  S  D  D  V  Q  V  *  S  E  T  L  V  G  F  D  L  V  *  S  F  L  C  L  L  G  S  R  I  S   </second_frame>
            <third_frame>   E  D  E  V  K  R  E  S  A  V  N  F  E  Q  A  *  E  Q  S :   G  R  R  S  V  *  G  D  *  K  G  S  A  E  R  *  D  R  D  L  S  R  A  A  A  G  V  Q  M  P  T  V  V  S  W  L  K  L  L  L  F  I  I  A  V  H  L  C  G  S  S  K  E  W  R  L  S  V  V  *  S  C  A  L  V  N  L  L  C  S  M  E  E  L  S  F  S  F  K  H  W  *  *  E  C  W  F  V  L  D  I  C  E  L  Y  *  M  F  S  F  K  L  T  F  L  R  G  F  L  F  V  W  G  Y  I  S  F  E  *  I  L  A  L  N  V  I  T  S  C  D  V  L  M  M  Y  K  C  E  V  K  P  W  L  V  L  I  *  Y  D  H  S  C  A  C  L  V  Q  E  Y  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0077G20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="84074" PGL_stop="87285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84074" e_stop="84314"/>
            <exon e_start="85613" e_stop="85777"/>
            <exon e_start="86065" e_stop="86122"/>
            <exon e_start="87085" e_stop="87285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84074" e_stop="84314" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84315" i_stop="85612" i_length="1298"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85613" e_stop="85777" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85778" i_stop="86064" i_length="287"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86065" e_stop="86122" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="86123" i_stop="87084" i_length="962"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87085" e_stop="87285" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84074" stop="84314"/>
              <exon start="85613" stop="85777"/>
              <exon start="86065" stop="86122"/>
              <exon start="87085" stop="87285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84074" stop="84314"/>
              <exon start="85613" stop="85777"/>
              <exon start="86065" stop="86122"/>
              <exon start="87085" stop="87169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84183" stop="84314"/>
              <exon start="85613" stop="85777"/>
              <exon start="86065" stop="86122"/>
              <exon start="87085" stop="87256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274732" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACGAGTACCGGGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG : AGCTTGACAAGCTGCTGGAAGATGCCCCATTGCCTTTTATCATGCAGCATGCTGCCAGAATTTCTGGTGTTAGGAAAAGAATTACATCGTTGAACTCACTTTTGAAGTCTATACAGAGGCGTCTTGATAATATCGACCACACATTATCTGCTGGTTTGTTACATG : AGAAGTCCTCAGGGGATGGTGGGCGAGACCATGAGAATCATAAGTCTTCATTGAAGAG : TTCATGATCAAAATCCAGGAGAAGATTCAAATGTCCTTCGCAGTGCCCGTAGAAATCTCCTTCTGATTGCAAGCATTTGGAACTGATTCAGCCTTGTGGTGTAAAAGGTAGTCTGATGCATGAGGTTATAACACACTGCGTTCTGAAAAGATGTTCTTTTACCTGTCAAAAAATTGCATGGTTTCAGCTCTGTGCCATACT</gDNA_template>
            <first_frame> *  R  V  P  G  N  T  M  S  N  E  A  P  A  K  P  P  C  D  T  P  E  H  D  S  A  G  V  N  G  F  D  I  N  N  D  T  S  S  T  A  L  A  K  G  L  S  T  I  I  S  S  L  I  R  E  F  D  D  S  A  A  A  T  S  R  S  Q  D  Q  L  S  S  T  L  D  R  L  T  G   : E  L  D  K  L  L  E  D  A  P  L  P  F  I  M  Q  H  A  A  R  I  S  G  V  R  K  R  I  T  S  L  N  S  L  L  K  S  I  Q  R  R  L  D  N  I  D  H  T  L  S  A  G  L  L  H   : E  K  S  S  G  D  G  G  R  D  H  E  N  H  K  S  S  L  K  S :   S  *  S  K  S  R  R  R  F  K  C  P  S  Q  C  P  *  K  S  P  S  D  C  K  H  L  E  L  I  Q  P  C  G  V  K  G  S  L  M  H  E  V  I  T  H  C  V  L  K  R  C  S  F  T  C  Q  K  I  A  W  F  Q  L  C  A  I   </first_frame>
            <second_frame>  D  E  Y  R  E  I  Q  C  R  T  K  P  Q  Q  N  H  R  A  T  H  R  S  M  T  Q  P  A  S  T  A  L  T  S  T  T  T  L  Q  V  L  P  *  Q  R  A  F  P  L  *  Y  L  L  *  S  G  N  L  M  I  V  L  P  P  P  L  V  V  K  I  N  S  L  P  P  S  I  V  S  L  E  :  S  L  T  S  C  W  K  M  P  H  C  L  L  S  C  S  M  L  P  E  F  L  V  L  G  K  E  L  H  R  *  T  H  F  *  S  L  Y  R  G  V  L  I  I  S  T  T  H  Y  L  L  V  C  Y  M  :  R  S  P  Q  G  M  V  G  E  T  M  R  I  I  S  L  H  *  R   : V  H  D  Q  N  P  G  E  D  S  N  V  L  R  S  A  R  R  N  L  L  L  I  A  S  I  W  N  *  F  S  L  V  V  *  K  V  V  *  C  M  R  L  *  H  T  A  F  *  K  D  V  L  L  P  V  K  K  L  H  G  F  S  S  V  P  Y  </second_frame>
            <third_frame>   T  S  T  G  K  Y  N  V  E  R  S  P  S  K  T  T  V  R  H  T  G  A  *  L  S  R  R  Q  R  L  *  H  Q  Q  R  H  F  K  Y  C  L  S  K  G  P  F  H  Y  N  I  F  S  N  P  G  I  *  *  *  C  C  R  H  L  S  *  S  R  S  T  L  F  H  P  R  S  S  H  W  R :   A  *  Q  A  A  G  R  C  P  I  A  F  Y  H  A  A  C  C  Q  N  F  W  C  *  E  K  N  Y  I  V  E  L  T  F  E  V  Y  T  E  A  S  *  *  Y  R  P  H  I  I  C  W  F  V  T  * :   E  V  L  R  G  W  W  A  R  P  *  E  S  *  V  F  I  E  E  :  F  M  I  K  I  Q  E  K  I  Q  M  S  F  A  V  P  V  E  I  S  F  *  L  Q  A  F  G  T  D  S  A  L  W  C  K  R  *  S  D  A  *  G  Y  N  T  L  R  S  E  K  M  F  F  Y  L  S  K  N  C  M  V  S  A  L  C  H  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84077" stop="84314"/>
                    <exon start="85613" stop="85777"/>
                    <exon start="86065" stop="86122"/>
                    <exon start="87085" stop="87091"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVPGNTMSNEAPAKPPCDTPEHDSAGVNGFDINNDTSSTALAKGLSTIISSLIREFDDSAAATSRSQDQLSSTLDRLTGELDKLLEDAPLPFIMQHAARISGVRKRITSLNSLLKSIQRRLDNIDHTLSAGLLHEKSSGDGGRDHENHKSSLKSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="84086" e_stop="84314"/>
            <exon e_start="84735" e_stop="84960"/>
            <exon e_start="85013" e_stop="85033"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.437" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.484" e_score="1.000"/>
          <exon-only e_score="0.762"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="84086" e_stop="84314" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.437">
            <gDNA_intron_boundary i_start="84315" i_stop="84734" i_length="420"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84735" e_stop="84960" e_length="226"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.484">
            <gDNA_intron_boundary i_start="84961" i_stop="85012" i_length="52"/>
          </intron>
          <exon e_serial="3" e_score="0.762">
            <gDNA_exon_boundary e_start="85013" e_stop="85033" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84086" stop="84314"/>
              <exon start="84735" stop="84960"/>
              <exon start="85013" stop="85033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAATACAATGTCGAACGAAGCCCCAGCAAAACCACCGTGCGACACACCGGAGCATGACTCAGCCGGCGTCAACGGCTTTGACATCAACAACGACACTTCAAGTACTGCCTTAGCAAAGGGCCTTTCCACTATAATATCTTCTCTAATCCGGGAATTTGATGATAGTGCTGCCGCCACCTCTCGTAGTCAAGATCAACTCTCTTCCACCCTCGATCGTCTCACTGGAG : GCTTACCCAAACAGATGTGGTTGCAATGTATCAAGTTGTTCAATGGATTGGTCGAGATGAGCATAAGATGCCGTCACACCATTGTCATGTTAGAGAAATCACCAGGGTTGGGGCGTGTGTGTGTGCTGGGAGGCAATAGCTGTATATGTAATTTTGTTTGCACCTTCTAGTTTCATTTGCAGCTCACCATTGTTTCCTTGAGAATGAATACAATCACTTTCTTCTT : CTAAAGGAGAAAAAAAAAAGA</gDNA_template>
            <first_frame> G  N  T  M  S  N  E  A  P  A  K  P  P  C  D  T  P  E  H  D  S  A  G  V  N  G  F  D  I  N  N  D  T  S  S  T  A  L  A  K  G  L  S  T  I  I  S  S  L  I  R  E  F  D  D  S  A  A  A  T  S  R  S  Q  D  Q  L  S  S  T  L  D  R  L  T  G   : G  L  P  K  Q  M  W  L  Q  C  I  K  L  F  N  G  L  V  E  M  S  I  R  C  R  H  T  I  V  M  L  E  K  S  P  G  L  G  R  V  C  V  L  G  G  N  S  C  I  C  N  F  V  C  T  F  *  F  H  L  Q  L  T  I  V  S  L  R  M  N  T  I  T  F  F  F :   *  R  R  K  K  K   </first_frame>
            <second_frame>  E  I  Q  C  R  T  K  P  Q  Q  N  H  R  A  T  H  R  S  M  T  Q  P  A  S  T  A  L  T  S  T  T  T  L  Q  V  L  P  *  Q  R  A  F  P  L  *  Y  L  L  *  S  G  N  L  M  I  V  L  P  P  P  L  V  V  K  I  N  S  L  P  P  S  I  V  S  L  E  :  A  Y  P  N  R  C  G  C  N  V  S  S  C  S  M  D  W  S  R  *  A  *  D  A  V  T  P  L  S  C  *  R  N  H  Q  G  W  G  V  C  V  C  W  E  A  I  A  V  Y  V  I  L  F  A  P  S  S  F  I  C  S  S  P  L  F  P  *  E  *  I  Q  S  L  S  S   : S  K  G  E  K  K  K  </second_frame>
            <third_frame>   K  Y  N  V  E  R  S  P  S  K  T  T  V  R  H  T  G  A  *  L  S  R  R  Q  R  L  *  H  Q  Q  R  H  F  K  Y  C  L  S  K  G  P  F  H  Y  N  I  F  S  N  P  G  I  *  *  *  C  C  R  H  L  S  *  S  R  S  T  L  F  H  P  R  S  S  H  W  R :   L  T  Q  T  D  V  V  A  M  Y  Q  V  V  Q  W  I  G  R  D  E  H  K  M  P  S  H  H  C  H  V  R  E  I  T  R  V  G  A  C  V  C  A  G  R  Q  *  L  Y  M  *  F  C  L  H  L  L  V  S  F  A  A  H  H  C  F  L  E  N  E  Y  N  H  F  L  L  :  L  K  E  K  K  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84086" stop="84314"/>
                    <exon start="84735" stop="84904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNTMSNEAPAKPPCDTPEHDSAGVNGFDINNDTSSTALAKGLSTIISSLIREFDDSAAATSRSQDQLSSTLDRLTGGLPKQMWLQCIKLFNGLVEMSIRCRHTIVMLEKSPGLGRVCVLGGNSCICNFVCTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="91630" PGL_stop="91949"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91630" e_stop="91949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="91630" e_stop="91949" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91630" stop="91949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268758" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTTCTTTTTATATATATATATATTCCATTCTGTAATCGTTACGTTAACGTTTCTTCTATTTGTATGTACGCCGGAAATTATGGCTTCAGCTTGCGTTAACAAAATGGGTATGTCGCCGGAGAAGTTTTTGGATTGTTCTCCGGCTGCGAAGTACAAGTCATATGGTTGGTTAAGTCCAAGGATGTCATTTAGTAGGGACGGCGAAGCTTCCAAGGTTGCCGGAGCTAAGCAGACGAGTGTTGAAAATGATAAGGTGGAGGAATTAGATCCAGAAGTTTCGAAAGATATGGGCGATTTTGAGTTTTGCCTTGAAGATC</gDNA_template>
            <first_frame> L  F  L  F  I  Y  I  Y  I  P  F  C  N  R  Y  V  N  V  S  S  I  C  M  Y  A  G  N  Y  G  F  S  L  R  *  Q  N  G  Y  V  A  G  E  V  F  G  L  F  S  G  C  E  V  Q  V  I  W  L  V  K  S  K  D  V  I  *  *  G  R  R  S  F  Q  G  C  R  S  *  A  D  E  C  *  K  *  *  G  G  G  I  R  S  R  S  F  E  R  Y  G  R  F  *  V  L  P  *  R   </first_frame>
            <second_frame>  S  F  F  L  Y  I  Y  I  F  H  S  V  I  V  T  L  T  F  L  L  F  V  C  T  P  E  I  M  A  S  A  C  V  N  K  M  G  M  S  P  E  K  F  L  D  C  S  P  A  A  K  Y  K  S  Y  G  W  L  S  P  R  M  S  F  S  R  D  G  E  A  S  K  V  A  G  A  K  Q  T  S  V  E  N  D  K  V  E  E  L  D  P  E  V  S  K  D  M  G  D  F  E  F  C  L  E  D  </second_frame>
            <third_frame>   L  S  F  Y  I  Y  I  Y  S  I  L  *  S  L  R  *  R  F  F  Y  L  Y  V  R  R  K  L  W  L  Q  L  A  L  T  K  W  V  C  R  R  R  S  F  W  I  V  L  R  L  R  S  T  S  H  M  V  G  *  V  Q  G  C  H  L  V  G  T  A  K  L  P  R  L  P  E  L  S  R  R  V  L  K  M  I  R  W  R  N  *  I  Q  K  F  R  K  I  W  A  I  L  S  F  A  L  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0077G20.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91631" stop="91948"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFLYIYIFHSVIVTLTFLLFVCTPEIMASACVNKMGMSPEKFLDCSPAAKYKSYGWLSPRMSFSRDGEASKVAGAKQTSVENDKVEELDPEVSKDMGDFEFCLED</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 231 chains have been computed
$ 
$ memory statistics:
$ 468232 bytes spliced alignments in total
$ 179 spliced alignments have been stored
$ 2615 bytes was the average size of a spliced alignment
$ 30544 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1796 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 258 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 15:34:09
-->
