<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-03 20:40:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0001N06-jmcY1/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0001N06-jmcY1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0001N06-jmcY1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325881" ref_strand="+" ref_description="SGN-U325881        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: SRT1 | transcriptional regulator Sir2 family protein, contains Pfam domain PF02146: transcriptional regulator, Sir2 family | chr5:22584448-22588189 FORWARD | Aliases: MDF20.20, MDF20_20, SRT1(evalue: 1e-161, score=497) genbank/nr: gi|15240574|ref|NP_200387.1| transcription regulator Sir2-related protein [Arabidopsis thaliana] gi|9758610|dbj|BAB09243.1| transcription regulator Sir2-like protein [Arabidopsis thaliana] gi|12006420|gb|AAG44850.1| sir2-like protein [Arabidopsis thaliana](evalue: 1e-159, score=497)">
      <seq>gctttctttgaagagtattcctctgcttctaattctttagtgatcaatcaatcttttttctcaaagagaaaattaaagaagaacagattgttcctgaagaacaaaggggaaaaaaatgtctctgggttatgctgaaaagctttcttttatagaagatgtgggcaatgttgggatgactgagtattttgacccacctctccttttgcaagacaaaattgagagacttgctgtgatgatacaaaagagtaagcatttagtggtgtttacaggagcaggaatatcccacttcttgtggtatacctgattttcgtggtcccaagggtatttggactcttcagagagaagggaaagcgctaccagaagcatcattgccttttcatcgtgcaactccaagcatgacacacatggccctagtggaactagagaaggcgggttttctaaagtttcttataagccagaacattgatggccttcatcttcgctctggaattccaagggagaagctttctgaattacatggggattcttttatggaacgatgcccttcttgtggaattgagtatatgagggattttgaaatagaaactattgggttgaaggaaactgcacggcgttgttccaaggtgggctgtggtgcaagacttaaagacacagttcttgactgggaggatgctctacctccaaaggagatgaatccagctgagagacactgcaaaatggctgatgttgtgttatgtctagggacaagtttgcagatcacccctgcctgtaatttgcctctaaaatcactcaaaggcggtggaaagattgtaatagttaatcttcagaaaactcccaaggacaagaaagcaagcctactgattcatggtcttgtagacaaggttatcacaggagtcatggaattcctcagtctgcgaatcccaccttttattagaattgatcttctccagaccatttttactcaagcctcaagtcttgatgaaaaatatgtaaattggagccttgcagtggcaagcgtccatggaaatagagcaccattgccttttatcaaatctgtagaggtttctttttcagaaagtcaaaacatgaaagcggctgtcctggataaacaacctctttatctgaaaaggcggacagttaagagtacaaatccttttaacattatgatgaaattgaacttcagtgatggttgcaagtgctcatcggctgaaatcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0001N06-jmcY1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0001N06.1" temp_strand="-" temp_description="C07HBa0001N06.1  AC210345.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0001N06 upload_account_name:france">
        <position start="40501" stop="30771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40201" g_stop="39988" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39987" i_stop="38494" i_length="1494">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38493" g_stop="38464" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="244" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38463" i_stop="38373" i_length="91">
            <donor d_prob="0.725" d_score="0.00"/>
            <acceptor a_prob="0.912" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38372" g_stop="38280" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="338" r_length="94" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38279" i_stop="37063" i_length="1217">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37062" g_stop="36943" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="458" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36942" i_stop="35634" i_length="1309">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35633" g_stop="35533" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="559" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35532" i_stop="35375" i_length="158">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35374" g_stop="35266" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="668" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="35265" i_stop="34958" i_length="308">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34957" g_stop="34878" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="748" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34877" i_stop="34710" i_length="168">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34709" g_stop="34631" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="827" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34630" i_stop="33962" i_length="669">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="33961" g_stop="33908" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="828" r_stop="881" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="33907" i_stop="33445" i_length="463">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="33444" g_stop="33348" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="882" r_stop="978" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="33347" i_stop="33126" i_length="222">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="33125" g_stop="33043" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="979" r_stop="1061" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="33042" i_stop="31916" i_length="1127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="31915" g_stop="31848" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1062" r_stop="1129" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="31847" i_stop="31161" i_length="687">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="31160" g_stop="31071" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1130" r_stop="1219" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0001N06.1" gen_strand="-" ref_id="SGN-U325881" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1218</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0001N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40201" e_stop="39988"/>
          <exon e_start="38493" e_stop="38464"/>
          <exon e_start="38372" e_stop="38280"/>
          <exon e_start="37062" e_stop="36943"/>
          <exon e_start="35633" e_stop="35533"/>
          <exon e_start="35374" e_stop="35266"/>
          <exon e_start="34957" e_stop="34878"/>
          <exon e_start="34709" e_stop="34631"/>
          <exon e_start="33961" e_stop="33908"/>
          <exon e_start="33444" e_stop="33348"/>
          <exon e_start="33125" e_stop="33043"/>
          <exon e_start="31915" e_stop="31848"/>
          <exon e_start="31160" e_stop="31071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCTTTGAAGAGTATTCCTCTGCTTCTAATTCTTTAGTGATCAATCAATCTTTTTTCTCAAAGAGAAAATTAAAGAAGAACAGATTGTTCCTGAAGAACAAAGGGGAAAAAAATGTCTCTGGGTTATGCTGAAAAGCTTTCTTTTATAGAAGATGTGGGCAATGTTGGGATGACTGAGTATTTTGACCCACCTCTCCTTTTGCAAGACAAAGTGAGATTTTTTTCTCTTTTTTGGCACTTTTTTCTGCAACCCTTTACTCCTTTTGTGTTAATTGTTGTGATTTTTAACTTGTTTGAACATTTTATGTGACTGCAAATAGCCATAAAACTTGTTTAGGTTTTTGTGCTTGATTAAGAATGGAAATTTAGGAGCTGGGGGTCTTTTTGATTGCTTGGTAGTTTGCATTTAGGATTTTTCATGAGATCCAGAATTAATTCCCACATTGTTGAGCGTAACAGGACCCTGATAATCTCAATTTCATTAATCTAATTAGGGGTTGTTAAATCTCATGGGCAGTGGCAAAGTTAGGATTTTTACTATAGAAGGGGTTCGAAATATAAAAAGTAAATATCTGGAGAAGTCAAAGGAGGTTCAATGTCGACTATATATACGGAGAAATAATTTTAATCATGTATAAACGGTTTAGTTTTCTGTCAAAGGGGTTCGGATGAACCTCCTTGACTCTACCTGGGTCTGCGCCTGCTTAGGGGTGTAAACCATGAAGCATTGGGAGTTTTCTAGTTATTTTGTTCAAAAGCCTTTTGACAGTATCATGCATTGTGTTGGTCATGAGATAAATGTTATACATTGGACGATAAGTTCTTATGGTCCTTAGTCTTCTCGATTCAATTGATAATACACAATTTGCCATAAAAAATAGTATCAGTACAAGCACTTGGCAGTCCTGCACAGCGTCTTTGTCTCCACCACCAAATTTAGAGTTTTCATGTATCTTAGGGCTTCAATACTATATGGAATGAGGAATCCTTCTATTAGCAATATTATTGCAGCTTGTTGAATATCCATGCGAGTTATGCATTTGTGCTTTGATCATCGTTCCTTTTGCTATTGCATGTCTTCTATGTTAAGGTATTAAGGTCTTTCTCAAAAAAAATGTTAACTTAAGGTAGAATTAGTTAATCATTGATAAAAAAAGAAAAGGATTAGTAGGAAATCAGTATGAGTACCTAGATAGCACTCAAAAAACTTATGGTTGTTCATTTGGAATGGTATTTGGAATTTTGAAGTTCCAACCGCTGTAGAAAATATGGCTTCCAACTTTTCGTTATCTGTGGTCTAGGCAACAAAAATGATCTTAATTTTTCTGTCAGGTATATAACAATTGTTTAAATAGCATTCTGTGTCATCTTCACAATCTCCAAGTGTCCCATAGTGTTGTTTTGTCTTTGTTGGAATTCTAGGACCTAAATACATTCTCTTGTTGTCCTCACTTTAAAGTGAAATCTGATTGCTAATAAATAAAGGAGATAATTTTAAGTAGATATCGTTTGCTGAATATGTAGATTCTGGCTGTAATTTCTATCCATTGTGCTGTTTAAGATTTTCTGGAAAATCAGTACTTTCTGGTGCTGGAGGATCTTCCTTTTCCTTCAGCTGCTTGTCAAAGATCAGTTAAAAGGGGAAGAATCACTTTATTTTTCTGTGTTCTTACTAATGCTGATTTTTTAAACATAAACTTTGCAGATTGAGAGACTTGCTGTGATGATACAAAAGGTGACTCCTTTAGACAGTCTTTGTCTTAGCTAGGCCATGTATAGCTTTTCTCTTTAGAAGTAACCCATTCTAACTCTTGTTTCTTCTACAGAGTAAGCATTTAGTGGTGTTTACAGGAGCAGGAATAT-CCACTTCTTGTGGTATACCTGATTTTCGTGGTCCCAAGGGTATTTGGACTCTTCAGGTATTGTTGTAGTTATATCAGTGAATTGCAAGCCCCTCTTTCTAAAAGCACATTGCTTGACATGTTTCTACTGTTGATATCCATGTTAAAATGTTGATATTTGATAATTGAATGCTGCCCTTTCGACCTGATTCTAGCTTATTTGGTCAGCCATTATCTCCAATCCTTCTTTCTACCTGCAATGTCATCTTTTAGGCTGGATATTTGGGAGCTGAGAGGAGGATGTGTTGATCATCTAAAGGTGGTGCAGAGTTTTCTTTTTCTCCTTTGTGTATTTGATCTGGGAAAGTTATATAAATAAGTGGATGAACACTTTGCACAATAAAGTTGTTTGATAGATTCTATCACTTTGCTTGGTAATAATGACATGAATTAAGGAAGGTGGCCTGAAAGGAATGATCTATCTTACGATGGGGGGAGCTGTTTTCTCTTGTGCGAATATGTCAAATTTACTGACATGCATGATACACCAAAATTGTCTTTTTATGTGTTATTGTTTGTGTATAGTGTCTAGTTCTCTTATTTCATTTTTAATATTGTATTGACACTAATCTCTTTACTAAGTAGGAAGAAGCTATTAAATACACTATAGTTTATATGTGCATATGGATTGCACAAGCAGTTTTATTCTTTTCTATGTTGCTCTGGCCTCCAAAAATGATGTTGTACCCGTGTCAAATCCTTCAAAATGCATAGCATTTAGAGGATCCAACACACAACGAGCTGTATATTTGAAGTGTTCGAGTAACATAGATTTTTTTGATAACTGTGGTGTCCGGGATAGATTGTGAGCATCTCAACTATTCCACCGCGTGTTTGCTATCCCTACCACCACATGTATCGGTTAAATCTTCTCACCAAAGGCTTAGATGGATGGGAATAAACCACTAGTGTTCTGTTATCTTTGGGGGGATTTGAATCCTGGTTTCCAAGGTTTTCACTTACTTCATTGACTGCTAGTTACACCCTTAAGTGCACAAGCATTTGTATTATTATCATTCATTGAGATATGAACAGATAATTTCTATTATTCCTTAGGGCATTTGATGGACAACATTGCAGTAAAGTTGTCAGGATCAAGCAATGGTTATGATGTGAATGTCTTTATATAGTGGTGGAGCATTTTCCATGGATTAGAATAGTATAACAATTCTTTACCGCTAAAGAATTATGAGCCATATTTTATCTTCTTATCCCTTTTATTTAACTGATTGTAGAGAGAAGGGAAAGCGCTACCAGAAGCATCATTGCCTTTTCATCGTGCAACTCCAAGCATGACACACATGGCCCTAGTGGAACTAGAGAAGGCGGGTTTTCTAAAGTTTCTTATAAGCCAGGTGTGGAATTATTGGTTTCTTACTATATGGGTGTGTTTAACGTTTGTATGGTTATTAATTATATCACTTCAGCTTTGTGTTTGTAGCTAGTGCTGCTTTCTAAATGAAGTGGCAATTTCAACTTCCGATCACACTCCTGTTTTTCATTTCTTCTGATTAGTCATTTAGTTGTCCATTTCCATTCCCAGGAAAAGTTCTGTTCTGCCCCTTCCAATGTCCTATGTTGTTCCTCGCTGTTAAACGAGGTGAGAGCTGCTCTATGCTCACTCTTCTTGCTTGGGGTCTATGCCTGAAGCCACATCTATCTTTGACATGCTAATCGATAGCTAGGGCTGTCAATTGAACACACCCATTAATCTTCGACTTAGATTGCCTTGGAAGAATGTTATAGGATAGATGTATGAATTAAATCACACAACCCTTAAATAGTTTTCATATTGTTACTAGTGATTTGCACTATTAAAAGCATTTTGAGCATACTTTGCTAATCAACGATCATGGTCTACCGATGTATTAAAGTTGGATGATGGTGAGATTGAAGAGTTTACCATACAGTTTAATATGCTCTTTTGACCTATTCTCATGGCACTATTGACTGTATACACGGTCAACTCTCCTTTTTGCCAATTTTTTTACTCCTCCGTGGGAACTCTCATCCTTTAGCTCCCTTGGGGATTGAACCATGACCTTTAGAGTTGGAGGTGAGGGGTTCTTACTAAATGAGCAACTCTCTCCTGTCCCTTTTTGCCGACTTCAACTAATTCATAGTGACATAAGATTAACCAGCAATTGAATGAACGCCTACACGGTTATCATTCCACCCAAAAGATTGGAAATGTAGAGGATTCATATAGCCAACCTTAACTAGATTGGGGATTCAGGTGAAGTTGATAAATTGATGTTGTCATTTATGTTTTGCTCCGTGCTGAGTGTATTTACTGTTGACCTAACAGAAGCAACATAACAAAGACAACATTTCTGATTCCAATTTAATATTGTGTTTGAGTATACTTTATGGTAGTGGTGTGGATGAATTCCATTACTCACTGCATTTCCTTCCATCCAAAGCTTTCCCATTTCCCCCTCAGCCCGACAAAATTAGTTCAACCAATGAGAGACAGAGGGAGTATCTATGTGCTTAAAATATGACCTTTCACTTGATCAAGAGATGTTTATTCTACTTAAATTCAAAGCTTCAGATTCCATTTACTCTATGTAGTTTCAACTGTCTATTTCCAAAAAGGTTCACATTTGTATCTCTTGGTGGATGATATTAAAATGTAACATTATTCTTATTTGAAAATGGTAGAACATTGATGGCCTTCATCTTCGCTCTGGAATTCCAAGGGAGAAGCTTTCTGAATTACATGGGGATTCTTTTATGGAACGATGCCCTTCTTGTGGAATTGAGTAAGATTCCGTCTTTTTATGCAGCATGCTATCCTCTGCTACTATGCATGTTCCCACATTCATGTATATTCACTCAATTTTTTTTTATTGTATGTAGTTTTTCTGGTAACATTATGGTGATTGCTTATAAGTCTGTTTTTGTGAATTGATCCATGAAGGTATATGAGGGATTTTGAAATAGAAACTATTGGGTTGAAGGAAACTGCACGGCGTTGTTCCAAGGTGGGCTGTGGTGCAAGACTTAAAGACACAGTTCTTGACTGGGAGGTAACCATAAACAGCTTTTTGTTTAATAACAAAGTCCTAGGATGAAGGATCTGGGCTTCTCTTTATAGTTGCACAGTTACATTCCATGGCCCTTTAGTAGTGACAGTTAAAGATATAGACAGAAGTTTGACAGGTTGTACCCTAATGAGCATCCAATGATTAAGAAAAAGTTGTAATAGTTTCAATGTTTTTTTTTTCGTTATCTGCTACTTCGGCCAACGCATCAAAGATTTTTTATGGCTAAAATATGATTCCACGTATCACTCTGTTGTTGACCTCATCCATTCCCCTCCTGTTTTTCTCCTCAGGATGCTCTACCTCCAAAGGAGATGAATCCAGCTGAGAGACACTGCAAAATGGCTGATGTTGTGTTATGTCTAGGGACAAGGTAAAGCTAACTAACTATTTGACTACCTCTGTAATCTGGAATTCTGATGCATGATGCTAAATGAGTTCTTACAGTGTTTGTTGACTCTAAACTGTTAAACTATTTACTTCCGTCATTCTTTGCCCTTAATCATGTCAGGAGATAAAATTACTTGTTCTACTCTTGCAGTTTGCAGATCACCCCTGCCTGTAATTTGCCTCTAAAATCACTCAAAGGCGGTGGAAAGATTGTAATAGTTAATCTTCAGGTATATTATTCCTTGGGCCAAATGTAACATCAGCAAACACATTTCCCATATTTCCATTGACCCTAGTTTTGATGATAGAAATTGCATCAGAGCCTCATAATCAAACCCCCCCCCCCCAAAAAAAAAAAAATATTTTGCATTGCTTTGTCATTTAAGATTTATCTGTTTTTAGTGTACTGCCATGTTTTAATCAAAAACAACAAATATTACTTTCTGTTCTCAAATAATTGCAGTTATTTCTCAATCACTAAATCATTTAGGCAAAGCTATCATTTTCCTTGCAATGCACATATGGGACTCCTAGCTTATTAGTCTGCTGTACTTTGCCATGATAAATGATTCAGGCCATGCTTATCAGAGCCAAAAAATAAAAGGAGATAAAGGCTTTCAGTCTCTGTAGATGCTTAATTTTGAATTTTCTACTAGGTCAAATATAAGAGGATCTCTGAGGGAATTAGAAAGTAAAGCTTTAATTATCCCGAGGATGAAAATTTCACAAGTTTCATATCAAAATGTTAAAGATAGGTGAATATTTCTTGCTCATATATTGTGACCTTGGCAGTGACTCTACTTGAAAATATTCTCTGCCGATCATCGATGGAAAATTTGTTGGATTAATAGGAGTTCATCTGTTACTTAGCTCTTATATCCTCGTCCATTATTTTGCAGAAAACTCCCAAGGACAAGAAAGCAAGCCTACTGATTCATGGTCTTGTAGACAAGGTAACATATGTTTGTTGTTGTACCTCTATGCTACTGAAAGTTGTTATCATGGTTCGTAGATTCTGAATAGTAAACATTAAATTATTGCTTGGTGAGGTTTCACATGTGGAATTGCTAATTGAAATATATAACCTTCATCTGACGACTTGGACTTAGTAGGTGCTAACTCTTTAGTTCAAAGTCAATGTTTATTCGTTAACCAGGTGCTTGGGGCATCACAAGCCCCCCCTTCCTTCCCTCCCCCCTCCCCCTCAACCTCAAATGTCCTTGAAGTGACTTACAAATGGTTTTGTTTAGGCATGTCTAATGGCTCCCATTTGATTACATGCGAATTTAGCTATCAGACCTATATGCAAATTCACATGTTCATATATTCTTTTTCTTATGGTACTTGGTCTGGAAAAAGATTTGTACTTTTGATAAATCCTGTTTCCAGAATGTTTACCAATATAGTTATGAACAGGTTATCACAGGAGTCATGGAATTCCTCAGTCTGCGAATCCCACCTTTTATTAGAATTGATCTTCTCCAGACCATTTTTACTCAAGCCTCAAGTCTTGGTAACTAACCTGAATTTGTGCCTATCTTCTTTTCATTGAACTGTCCATTTGGTGTTTTGAAGTCCTCAAGATCAAAAGACAGTTTCACTTGTACTGTTATTTTGCAAGCAATCTCAGTTTGTGTGAATGTGCACAAAGCAAGTTACAATTGATCTGGTCCTCGTTTGAGTGGGTCATTCATTGAATATGTCTTTTGATTTATCTAATTTACTTGTTTTGCAGATGAAAAATATGTAAATTGGAGCCTTGCAGTGGCAAGCGTCCATGGAAATAGAGCACCATTGCCTTTTATCAAATCTGTAGAGGTGAGTTAATGTTTATAGCTGTGTCTGCAGATTCTGCTGATTATGATGAATACACATGTATGTTCTTATAGAATATAAGTACTGTGGAGGCTCAGTGTCTTCCTCTCCTCTCACAGCAACCCCCAACCCCACGCACACTTACATTATTGCACCTCTTAATCAAGAAGTGAAGGAAAAAAATTTCGTGCCATGCCTTGCCTCGTCCTCCCTTCTTTTTTTTTTTTGCCAGGAATCACGGTTATTAAATAGAAAAAAAGTAAGCATGGAATCAATAGCTAGCAGCGGGTGCATCAATTGCATAATCACTGGCAGAGTCAGCATTATCCACTGATAAACCACGACCTTTATGAGTTATTCCTTTAATATATTTGATTAGTTATGTAGACTTGATTGAAATAAAATGATCTATCACTTTAGGACTTGGGGAAATGGCTCTGTACGCTTGCAGCAAATCAGAACATTATGACCTTCCTTTTGGAGTCTCTTCCTAAAGTAAAAGCGAATTCGTAGGTTAGCTCTTGCCTCTTTTGAGGACCTATGGCTCTGTTCACCTATCCTGTGTATCTCTTGTTTGAGGTATGCAGATCCAAGGCTTTCGGAATCTGTTCTGGTACCATATGAGCCAAGAGATGACAATGATAACAACAACATACCCCCGTATGACAATGATAAATGGGCTCTAAAAATGTGAGCAGGGACGTGGCAAGTAAAAGCGAGTGTGAATAGTCCTACTGTAAAAGTGTTGATGCTACTTCAACTTACCTCAGTTTTTTCTGTCGATTGAGTGAAGCAATTACTTTTTGTGCTGACTGTGAGTAGCTTAGACCTTTTTGACCTTTTCTTTTTGGGATGAAGTAACATGTTATCATTAAGAAGGCATCAAGAAGATGCATAAGGAACAAAAAATACAAAGAAGTTGACTGTGAGATCCTGTTGCTACAAAAAAACTATGCTAACGGAAGATGTTTGTTACGATGCTCGTTACTTGTCTCATTTGCAAAACAGTGAAATATCCTGTATTTCTTTTCCTTCAGTAAATTATTGTCATCAGTACTAGTCCTTAGCCTTCATAAACATTCTGGATCTGTTATGGTAACAGCTTTGCTTCTTTTGAAATGGAACTGTAGGTTTCTTTTTCAGAAAGTCAAAACATGAAAGCGGCTGTCCTGGATAAACAACCTCTTTATCTGAAAAGGTAGTTTTATAACTTGAAACTTGCTATGTTGAATGTGAAATATAATCTTGTTCAGTCTTTGTAATACATTTTCCTCTGGCATAGTTGCTTCCGTATATTCAAAATATTTTGCTCTTGTATTAGTAATTCAAGATTTTCTAATTGATTCATCAAAATATCATGTAGAAAAGGATGTTTAGATTATCCGACAATCTTGATCACACATTTTCCAGCTTATGGATATATTTGAAAAGAAAGATGTTTTCATTGTCAACGAAACTGTAGCATCCAAAAAATAATTTTAACAATCATTTATGTGTTCCTCTCTTGTTTGCATATCATTACCCTAGTCATAATCTAACCTACTTAAATGGAAAAATAAAGAAATATAAATTGGACAAGTAATACAATGAGAAAAGGACAATGAGAGGTAATATCATTTTAACAGTTTCCATTTTCTAGCCCAAAAAGGAAAAGAAAAGAAGACTATAGTTGATGTAAAAAGTCAGTATGCTAAACTCAAAGTCATTGATGAGGAAAAAATCGTAGCTAAGTAAAGGTGAAATCTTACCCATGTTTGAATTTATCTCAGCGGTATATGCTAGTTTTCCCTATTAGTTATTGGTGAGGGTTTATTTCATATGTTCACTGAAGTTATAAGCTCTCTCAAATCTGAGACATTCTTATTCAACTCCTATTCCTTGTCAGGCGGACAGTTAAGAGTACAAATCCTTTTAACATTATGATGAAATTGAACTTCAGTGATGGTTGCAAGTGCTCATCGGCTGAAATCATGAT</genome_strand>
        <mrna_strand>GCTTTCTTTGAAGAGTATTCCTCTGCTTCTAATTCTTTAGTGATCAATCAATCTTTTTTCTCAAAGAGAAAATTAAAGAAGAACAGATTGTTCCTGAAGAACAAAGGGGAAAAAAATGTCTCTGGGTTATGCTGAAAAGCTTTCTTTTATAGAAGATGTGGGCAATGTTGGGATGACTGAGTATTTTGACCCACCTCTCCTTTTGCAAGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAGACTTGCTGTGATGATACAAAAG...........................................................................................AGTAAGCATTTAGTGGTGTTTACAGGAGCAGGAATATCCCACTTCTTGTGGTATACCTGATTTTCGTGGTCCCAAGGGTATTTGGACTCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGGGAAAGCGCTACCAGAAGCATCATTGCCTTTTCATCGTGCAACTCCAAGCATGACACACATGGCCCTAGTGGAACTAGAGAAGGCGGGTTTTCTAAAGTTTCTTATAAGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATTGATGGCCTTCATCTTCGCTCTGGAATTCCAAGGGAGAAGCTTTCTGAATTACATGGGGATTCTTTTATGGAACGATGCCCTTCTTGTGGAATTGA..............................................................................................................................................................GTATATGAGGGATTTTGAAATAGAAACTATTGGGTTGAAGGAAACTGCACGGCGTTGTTCCAAGGTGGGCTGTGGTGCAAGACTTAAAGACACAGTTCTTGACTGGGAG....................................................................................................................................................................................................................................................................................................................GATGCTCTACCTCCAAAGGAGATGAATCCAGCTGAGAGACACTGCAAAATGGCTGATGTTGTGTTATGTCTAGGGACAAG........................................................................................................................................................................TTTGCAGATCACCCCTGCCTGTAATTTGCCTCTAAAATCACTCAAAGGCGGTGGAAAGATTGTAATAGTTAATCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTCCCAAGGACAAGAAAGCAAGCCTACTGATTCATGGTCTTGTAGACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCACAGGAGTCATGGAATTCCTCAGTCTGCGAATCCCACCTTTTATTAGAATTGATCTTCTCCAGACCATTTTTACTCAAGCCTCAAGTCTTG..............................................................................................................................................................................................................................ATGAAAAATATGTAAATTGGAGCCTTGCAGTGGCAAGCGTCCATGGAAATAGAGCACCATTGCCTTTTATCAAATCTGTAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTTTTTCAGAAAGTCAAAACATGAAAGCGGCTGTCCTGGATAAACAACCTCTTTATCTGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACAGTTAAGAGTACAAATCCTTTTAACATTATGATGAAATTGAACTTCAGTGATGGTTGCAAGTGCTCATCGGCTGAAATCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0001N06-jmcY1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322781" ref_strand="+" ref_description="SGN-U322781        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | fasciclin-like arabinogalactan-protein (FLA1), identical to gi:13377776::AAK20857:13377775:gb:AF333970 | chr5:22575374-22577687 REVERSE | Aliases: MDF20.17, MDF20_17(evalue: 2e-108, score=390) genbank/nr: gi|15240570|ref|NP_200384.1| fasciclin-like arabinogalactan-protein (FLA1) [Arabidopsis thaliana] gi|38257763|sp|Q9FM65|FLA1_ARATH Fasciclin-like arabinogalactan protein 1 precursor gi|9758607|dbj|BAB09240.1| gene_id:MDF20.17~pir||T06631~similar to unknown protein [Arabidopsis thaliana] gi|13377776|gb|AAK20857.1| fasciclin-like arabinogalactan-protein 1 [Arabidopsis thaliana] gi|27311863|gb|AAO00897.1| putative protein [Arabidopsis thaliana] gi|30725694|gb|AAP37869.1| At5g55730 [Arabidopsis thaliana](evalue: 1e-106, score=390)">
      <seq>atgtgtaaaaatacattattgtataaggttcgtacctgaacaataaatttgcagtcacttgagatctcacttgccccaataacaactccttgaatttcacacagtcaccggagttcttctttctcttacaacaccgacatgcagcttccgtcgtcggccaccgtggctgcggtggttctctccgtagtcctttttatttgtgccactgaagctcataacattactcacattctagccgaccataaacagttctccactttcaaccattacttaacaactacacacctcgccgctgaaattaaccgccggcaaaccatcactgtttgtgctgtagataatgccggaatgtcagatctactctccaaacaactatctatctacactataaaaaacgttctctcttttcacgtgcttctcgattacttcgacgctaaaaagcttcaccagattactaacggcacggcacttgccgccacaatgtttcaagctaccggctcagctaccggatcttctggattcgtaaacattactgatctaagaggaggtaaagtcgggctcagtccggctgattacaacggtcctcctccggctaaatttgtaaaatcaatcgccgagattccttacaacatctccgttattcaaataagtacgattttaccctcagacgaagctgaagctccgactccaggaccaagccaaatgaatctcacttctctaatgtcagctaaaggctgcaaagttttcgccgagactctattagcttctccggctgaaaaaacgtttgaggataacgttgatggcggagtaacaatattttgtccacgagatgatgcaatgaagaaatttttgcctaaatttaagaatttaacagcggaagggaagcaatcactgctcgaatatcatggaattcctatataccaatcgatttcgaatttgaaatcgaataatggagatatgaacactttagctactgacggagctaagaagtacgctgtagtcattcaaaatgacggtgaagatgttactataaaaacgaaaattgtgacggcgaagatcacggctactgtggttgataaactgccattagcgatttactcgcttgataaggtgttattacccgaggaattgttcaaggctagtcctactccggcgccggcgccggcaccggaggcacgtgctgaatctcctaagcactccaagtcaccaccggcacctgcatctccggctgagtctccagcggattctccggcggatggtcccaacggtgatgctgatgatttgacagatagcggtgctgttaagtacaatgccggagcatcacttgccgccgttttcagtttatggtttgccttcaacgtgttgatggaagtttgaaaaagaatttcatcaaattaaagttagttactgtattattagtctatttctcagtttttagatttacttctttgattctatttggaattttcattaatgtaatatgaatcattattgacttttcaaccattaattattatatgaaaaattacgcgattgagtagatttatcctcggcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0001N06-jmcY1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0001N06.1" temp_strand="-" temp_description="C07HBa0001N06.1  AC210345.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0001N06 upload_account_name:france">
        <position start="46455" stop="44300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46155" g_stop="44601" g_length="1555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1555" r_length="1555" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1556" polyA_stop="1571"/>
      <MATCH_line gen_id="C07HBa0001N06.1" gen_strand="-" ref_id="SGN-U322781" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1555</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0001N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46155" e_stop="44601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTAAAAATACATTATTGTATAAGGTTCGTACCTGAACAATAAATTTGCAGTCACTTGAGATCTCACTTGCCCCAATAACAACTCCTTGAATTTCACACAGTCACCGGAGTTCTTCTTTCTCTTACAACACCGACATGCAGCTTCCGTCGTCGGCCACCGTGGCTGCGGTGGTTCTCTCCGTAGTCCTTTTTATTTGTGCCACTGAAGCTCATAACATTACTCACATTCTAGCCGACCATAAACAGTTCTCCACTTTCAACCATTACTTAACAACTACACACCTCGCCGCTGAAATTAACCGCCGGCAAACCATCACTGTTTGTGCTGTAGATAATGCCGGAATGTCAGATCTACTCTCCAAACAACTATCTATCTACACTATAAAAAACGTTCTCTCTTTTCACGTGCTTCTCGATTACTTCGACGCTAAAAAGCTTCACCAGATTACTAACGGCACGGCACTTGCCGCCACAATGTTTCAAGCTACCGGCTCAGCTACCGGATCTTCTGGATTCGTAAACATTACTGATCTAAGAGGAGGTAAAGTCGGGCTCAGTCCGGCTGATTACAACGGTCCTCCTCCGGCTAAATTTGTAAAATCAATCGCCGAGATTCCTTACAACATCTCCGTTATTCAAATAAGTACGATTTTACCCTCAGACGAAGCTGAAGCTCCGACTCCAGGACCAAGCCAAATGAATCTCACTTCTCTAATGTCAGCTAAAGGCTGCAAAGTTTTCGCCGAGACTCTATTAGCTTCTCCGGCTGAAAAAACGTTTGAGGATAACGTTGATGGCGGAGTAACAATATTTTGTCCACGAGATGATGCAATGAAGAAATTTTTGCCTAAATTTAAGAATTTAACAGCGGAAGGGAAGCAATCACTGCTCGAATATCATGGAATTCCTATATACCAATCGATTTCGAATTTGAAATCGAATAATGGAGATATGAACACTTTAGCTACTGACGGAGCTAAGAAGTACGCTGTAGTCATTCAAAATGACGGTGAAGATGTTACTATAAAAACGAAAATTGTGACGGCGAAGATCACGGCTACTGTGGTTGATAAACTGCCATTAGCGATTTACTCGCTTGATAAGGTGTTATTACCCGAGGAATTGTTCAAGGCTAGTCCTACTCCGGCGCCGGCGCCGGCACCGGAGGCACGTGCTGAATCTCCTAAGCACTCCAAGTCACCACCGGCACCTGCATCTCCGGCTGAGTCTCCAGCGGATTCTCCGGCGGATGGTCCCAACGGTGATGCTGATGATTTGACAGATAGCGGTGCTGTTAAGTACAATGCCGGAGCATCACTTGCCGCCGTTTTCAGTTTATGGTTTGCCTTCAACGTGTTGATGGAAGTTTGAAAAAGAATTTCATCAAATTAAAGTTAGTTACTGTATTATTAGTCTATTTCTCAGTTTTTAGATTTACTTCTTTGATTCTATTTGGAATTTTCATTAATGTAATATGAATCATTATTGACTTTTCAACCATTAATTATTATATGAAAAATTACGCGATTGAGTAGATTTATCCTCGGCATAA</genome_strand>
        <mrna_strand>ATGTGTAAAAATACATTATTGTATAAGGTTCGTACCTGAACAATAAATTTGCAGTCACTTGAGATCTCACTTGCCCCAATAACAACTCCTTGAATTTCACACAGTCACCGGAGTTCTTCTTTCTCTTACAACACCGACATGCAGCTTCCGTCGTCGGCCACCGTGGCTGCGGTGGTTCTCTCCGTAGTCCTTTTTATTTGTGCCACTGAAGCTCATAACATTACTCACATTCTAGCCGACCATAAACAGTTCTCCACTTTCAACCATTACTTAACAACTACACACCTCGCCGCTGAAATTAACCGCCGGCAAACCATCACTGTTTGTGCTGTAGATAATGCCGGAATGTCAGATCTACTCTCCAAACAACTATCTATCTACACTATAAAAAACGTTCTCTCTTTTCACGTGCTTCTCGATTACTTCGACGCTAAAAAGCTTCACCAGATTACTAACGGCACGGCACTTGCCGCCACAATGTTTCAAGCTACCGGCTCAGCTACCGGATCTTCTGGATTCGTAAACATTACTGATCTAAGAGGAGGTAAAGTCGGGCTCAGTCCGGCTGATTACAACGGTCCTCCTCCGGCTAAATTTGTAAAATCAATCGCCGAGATTCCTTACAACATCTCCGTTATTCAAATAAGTACGATTTTACCCTCAGACGAAGCTGAAGCTCCGACTCCAGGACCAAGCCAAATGAATCTCACTTCTCTAATGTCAGCTAAAGGCTGCAAAGTTTTCGCCGAGACTCTATTAGCTTCTCCGGCTGAAAAAACGTTTGAGGATAACGTTGATGGCGGAGTAACAATATTTTGTCCACGAGATGATGCAATGAAGAAATTTTTGCCTAAATTTAAGAATTTAACAGCGGAAGGGAAGCAATCACTGCTCGAATATCATGGAATTCCTATATACCAATCGATTTCGAATTTGAAATCGAATAATGGAGATATGAACACTTTAGCTACTGACGGAGCTAAGAAGTACGCTGTAGTCATTCAAAATGACGGTGAAGATGTTACTATAAAAACGAAAATTGTGACGGCGAAGATCACGGCTACTGTGGTTGATAAACTGCCATTAGCGATTTACTCGCTTGATAAGGTGTTATTACCCGAGGAATTGTTCAAGGCTAGTCCTACTCCGGCGCCGGCGCCGGCACCGGAGGCACGTGCTGAATCTCCTAAGCACTCCAAGTCACCACCGGCACCTGCATCTCCGGCTGAGTCTCCAGCGGATTCTCCGGCGGATGGTCCCAACGGTGATGCTGATGATTTGACAGATAGCGGTGCTGTTAAGTACAATGCCGGAGCATCACTTGCCGCCGTTTTCAGTTTATGGTTTGCCTTCAACGTGTTGATGGAAGTTTGAAAAAGAATTTCATCAAATTAAAGTTAGTTACTGTATTATTAGTCTATTTCTCAGTTTTTAGATTTACTTCTTTGATTCTATTTGGAATTTTCATTAATGTAATATGAATCATTATTGACTTTTCAACCATTAATTATTATATGAAAAATTACGCGATTGAGTAGATTTATCCTCGGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0001N06-jmcY1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346876" ref_strand="+" ref_description="SGN-U346876        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttgaatattgttttccggccaccggaatattctattctttctcaatttcaccggaatattctgctctttctcattttcttagcactgcaatatgtctaaattatttggcactgttgttgtactttttctcgtgttaaattccggtgaagcgcaaaatgcaccttctcaatccccaatttcttctccctctaaatcaccggcggtaaaatcacaagcaccggtttcttccccgactaaatcaccggcagtgagatctcaagcaccggtttcttcgccctcggctcctacgattagcccgtctgcagcgccggtacagtcaccgaaagcagcttctccagtaaccagcgtttcacccgcactcactccgtcaatcagtagatctgctccggttccttctgttgcaactcctccgccggtatcaacgccggtgagcactccggcatcttccccggcagcagcggatgttccggccagcactgcgacaccgtcagtatccccaagcataccttcaagttcagcaagtccggcggagtctgttgacggacctactacggcgccggcgagtttatcaccgggaacttcaccagcacccgttgctgatgatgtttccgctgcaatttcagtgttgaaagtgccgatggttctaagtgggcttgctatttgggccgcactttcaatttgaatgcatccggcccaatgttgcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0001N06-jmcY1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0001N06.1" temp_strand="-" temp_description="C07HBa0001N06.1  AC210345.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0001N06 upload_account_name:france">
        <position start="50482" stop="49175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50182" g_stop="49475" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0001N06.1" gen_strand="-" ref_id="SGN-U346876" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0001N06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50182" e_stop="49475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATATTGTTTTCCGGCCACCGGAATATTCTATTCTTTCTCAATTTCACCGGAATATTCTGCTCTTTCTCATTTTCTTAGCACTGCAATATGTCTAAATTATTTGGCACTGTTGTTGTACTTTTTCTCGTGTTAAATTCCGGTGAAGCGCAAAATGCACCTTCTCAATCCCCAATTTCTTCTCCCTCTAAATCACCGGCGGTAAAATCACAAGCACCGGTTTCTTCCCCGACTAAATCACCGGCAGTGAGATCTCAAGCACCGGTTTCTTCGCCCTCGGCTCCTACGATTAGCCCGTCTGCAGCGCCGGTACAGTCACCGAAAGCAGCTTCTCCAGTAACCAGCGTTTCACCCGCACTCACTCCGTCAATCAGTAGATCTGCTCCGGTTCCTTCTGTTGCAACTCCTCCGCCGGTATCAACGCCGGTGAGCACTCCGGCATCTTCCCCGGCAGCAGCGGATGTTCCGGCCAGCACTGCGACACCGTCAGTATCCCCAAGCATACCTTCAAGTTCAGCAAGTCCGGCGGAGTCTGTTGACGGACCTACTACGGCGCCGGCGAGTTTATCACCGGGAACTTCACCAGCACCCGTTGCTGATGATGTTTCCGCTGCAATTTCAGTGTTGAAAGTGCCGATGGTTCTAAGTGGGCTTGCTATTTGGGCCGCACTTTCAATTTGAATGCATCCGGCCCAATGTTGCACAAA</genome_strand>
        <mrna_strand>TTGAATATTGTTTTCCGGCCACCGGAATATTCTATTCTTTCTCAATTTCACCGGAATATTCTGCTCTTTCTCATTTTCTTAGCACTGCAATATGTCTAAATTATTTGGCACTGTTGTTGTACTTTTTCTCGTGTTAAATTCCGGTGAAGCGCAAAATGCACCTTCTCAATCCCCAATTTCTTCTCCCTCTAAATCACCGGCGGTAAAATCACAAGCACCGGTTTCTTCCCCGACTAAATCACCGGCAGTGAGATCTCAAGCACCGGTTTCTTCGCCCTCGGCTCCTACGATTAGCCCGTCTGCAGCGCCGGTACAGTCACCGAAAGCAGCTTCTCCAGTAACCAGCGTTTCACCCGCACTCACTCCGTCAATCAGTAGATCTGCTCCGGTTCCTTCTGTTGCAACTCCTCCGCCGGTATCAACGCCGGTGAGCACTCCGGCATCTTCCCCGGCAGCAGCGGATGTTCCGGCCAGCACTGCGACACCGTCAGTATCCCCAAGCATACCTTCAAGTTCAGCAAGTCCGGCGGAGTCTGTTGACGGACCTACTACGGCGCCGGCGAGTTTATCACCGGGAACTTCACCAGCACCCGTTGCTGATGATGTTTCCGCTGCAATTTCAGTGTTGAAAGTGCCGATGGTTCTAAGTGGGCTTGCTATTTGGGCCGCACTTTCAATTTGAATGCATCCGGCCCAATGTTGCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0001N06-jmcY1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340127" ref_strand="+" ref_description="SGN-U340127        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA recognition motif (RRM)-containing protein | chr5:22561166-22564027 REVERSE | Aliases: MDF20.11, MDF20_11(evalue: 2e-53, score=206) genbank/nr: gi|15240556|ref|NP_200378.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gi|9758601|dbj|BAB09234.1| gene_id:MDF20.11~unknown protein [Arabidopsis thaliana](evalue: 1e-51, score=206)">
      <seq>gaagctgagctgagcaagtatggacacgtgaaggaggtgaaattttttgacgaaaaagctagtgggaagtctaaaggatattgccaggttgagtttcatgattcctcagctgccacagcttgcaaggaaagtatgaatggacatatgttcaatgggcgaccatgtgtagtcgcttatgcatcatcaccgtataatgtgaagaggatgggtgaggctcaggtgaatcgaaatcagcaggtggctcaaactgctgttccccaagcaaggcgggggcctggtgaagctgctggtaaaattggaaataacaacactcctactggtggcaattatcaaggcggcggtggtggtggggatggcaacagggggggttatggtagaggcagttggggtagaggaggtcctcaagctatgggaaatcgggggcctgtaggtcctatgagaaacaggcctggtgggattgcaggtaggggtatgatgggtaacggtggaggtggatttggacaaggtatgggtggtgcacctcctattatgcatcctcaaacaatgatgggtcaaggctttgatcctgcttttggagggcctatggggagaatgggtggttatggaggatttcctggtggtccagctccaccatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0001N06-jmcY1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0001N06.1" temp_strand="+" temp_description="C07HBa0001N06.1  AC210345.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0001N06 upload_account_name:france">
        <position start="60084" stop="61321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60384" g_stop="61021" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0001N06.1" gen_strand="+" ref_id="SGN-U340127" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0001N06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60384" e_stop="61021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTGAGCTGAGCAAGTATGGACACGTGAAGGAGGTGAAATTTTTTGAAGAAAAAGCTAGTGGGAAGTCTAAAGGATATTGCCAGGTTGAGTTTCATGATTCCTCAGCTGCCACAGCTTGCAAGGAAAGTATGAATGGACATATGTTCAATGGGCGACCATGTGTAGTCGCTTATGCATCATCACCGTATAATGTGAAGAGGATGGGTGAGGCTCAGGTGAATCGAAATCAGCAGGTGGCTCAAACTGCTGTTCCCCAAGCAAGGCGGGGGCCTGGTGAAGCTGCTGGTAAAATTGGAAATAACAACACTCCTACTGGTGGCAATTATCAAGGCGGCGGTGGTGGTGGGGATGGCAACAGGGGGGGTTATGGTAGAGGCAGTTGGGGTAGAGGAGGTCCTCAAGCTATGGGAAATCGGGGGCCTGTAGGTCCTATGAGAAACAGGCCTGGTGGGATTGCAGGTAGGGGTATGATGGGTAACGGTGGAGGTGGATTTGGACAAGGTATGGGTGGTGCACCTCCTATTATGCATCCTCAAACAATGATGGGTCAAGGCTTTGATCCTGCTTTTGGAGGGCCTATGGGGAGAATGGGTGGTTATGGAGGATTTCCTGGTGGTCCAGCTCCACCATTTCC</genome_strand>
        <mrna_strand>GAAGCTGAGCTGAGCAAGTATGGACACGTGAAGGAGGTGAAATTTTTTGACGAAAAAGCTAGTGGGAAGTCTAAAGGATATTGCCAGGTTGAGTTTCATGATTCCTCAGCTGCCACAGCTTGCAAGGAAAGTATGAATGGACATATGTTCAATGGGCGACCATGTGTAGTCGCTTATGCATCATCACCGTATAATGTGAAGAGGATGGGTGAGGCTCAGGTGAATCGAAATCAGCAGGTGGCTCAAACTGCTGTTCCCCAAGCAAGGCGGGGGCCTGGTGAAGCTGCTGGTAAAATTGGAAATAACAACACTCCTACTGGTGGCAATTATCAAGGCGGCGGTGGTGGTGGGGATGGCAACAGGGGGGGTTATGGTAGAGGCAGTTGGGGTAGAGGAGGTCCTCAAGCTATGGGAAATCGGGGGCCTGTAGGTCCTATGAGAAACAGGCCTGGTGGGATTGCAGGTAGGGGTATGATGGGTAACGGTGGAGGTGGATTTGGACAAGGTATGGGTGGTGCACCTCCTATTATGCATCCTCAAACAATGATGGGTCAAGGCTTTGATCCTGCTTTTGGAGGGCCTATGGGGAGAATGGGTGGTTATGGAGGATTTCCTGGTGGTCCAGCTCCACCATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="40201" PGL_stop="31071"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40201" e_stop="39988"/>
            <exon e_start="38493" e_stop="38464"/>
            <exon e_start="38372" e_stop="38280"/>
            <exon e_start="37062" e_stop="36943"/>
            <exon e_start="35633" e_stop="35533"/>
            <exon e_start="35374" e_stop="35266"/>
            <exon e_start="34957" e_stop="34878"/>
            <exon e_start="34709" e_stop="34631"/>
            <exon e_start="33961" e_stop="33908"/>
            <exon e_start="33444" e_stop="33348"/>
            <exon e_start="33125" e_stop="33043"/>
            <exon e_start="31915" e_stop="31848"/>
            <exon e_start="31160" e_stop="31071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.725" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.999" e_score="0.978"/>
          <exon-intron don_prob="0.790" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.875" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40201" e_stop="39988" e_length="214"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39987" i_stop="38494" i_length="1494"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38493" e_stop="38464" e_length="30"/>
          </exon>
          <intron i_serial="2" don_prob="0.725" acc_prob="0.912">
            <gDNA_intron_boundary i_start="38463" i_stop="38373" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="38372" e_stop="38280" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38279" i_stop="37063" i_length="1217"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37062" e_stop="36943" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.790" acc_prob="0.987">
            <gDNA_intron_boundary i_start="36942" i_stop="35634" i_length="1309"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35633" e_stop="35533" e_length="101"/>
          </exon>
          <intron i_serial="5" don_prob="0.952" acc_prob="0.998">
            <gDNA_intron_boundary i_start="35532" i_stop="35375" i_length="158"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35374" e_stop="35266" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.989">
            <gDNA_intron_boundary i_start="35265" i_stop="34958" i_length="308"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34957" e_stop="34878" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="34877" i_stop="34710" i_length="168"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="34709" e_stop="34631" e_length="79"/>
          </exon>
          <intron i_serial="8" don_prob="0.980" acc_prob="0.992">
            <gDNA_intron_boundary i_start="34630" i_stop="33962" i_length="669"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="33961" e_stop="33908" e_length="54"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.936">
            <gDNA_intron_boundary i_start="33907" i_stop="33445" i_length="463"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="33444" e_stop="33348" e_length="97"/>
          </exon>
          <intron i_serial="10" don_prob="0.935" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33347" i_stop="33126" i_length="222"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="33125" e_stop="33043" e_length="83"/>
          </exon>
          <intron i_serial="11" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="33042" i_stop="31916" i_length="1127"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="31915" e_stop="31848" e_length="68"/>
          </exon>
          <intron i_serial="12" don_prob="0.976" acc_prob="0.875">
            <gDNA_intron_boundary i_start="31847" i_stop="31161" i_length="687"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="31160" e_stop="31071" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40201" stop="39988"/>
              <exon start="38493" stop="38464"/>
              <exon start="38372" stop="38280"/>
              <exon start="37062" stop="36943"/>
              <exon start="35633" stop="35533"/>
              <exon start="35374" stop="35266"/>
              <exon start="34957" stop="34878"/>
              <exon start="34709" stop="34631"/>
              <exon start="33961" stop="33908"/>
              <exon start="33444" stop="33348"/>
              <exon start="33125" stop="33043"/>
              <exon start="31915" stop="31848"/>
              <exon start="31160" stop="31071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325881" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTTCTTTGAAGAGTATTCCTCTGCTTCTAATTCTTTAGTGATCAATCAATCTTTTTTCTCAAAGAGAAAATTAAAGAAGAACAGATTGTTCCTGAAGAACAAAGGGGAAAAAAATGTCTCTGGGTTATGCTGAAAAGCTTTCTTTTATAGAAGATGTGGGCAATGTTGGGATGACTGAGTATTTTGACCCACCTCTCCTTTTGCAAGACAAA : ATTGAGAGACTTGCTGTGATGATACAAAAG : AGTAAGCATTTAGTGGTGTTTACAGGAGCAGGAATATCCACTTCTTGTGGTATACCTGATTTTCGTGGTCCCAAGGGTATTTGGACTCTTCAG : AGAGAAGGGAAAGCGCTACCAGAAGCATCATTGCCTTTTCATCGTGCAACTCCAAGCATGACACACATGGCCCTAGTGGAACTAGAGAAGGCGGGTTTTCTAAAGTTTCTTATAAGCCAG : AACATTGATGGCCTTCATCTTCGCTCTGGAATTCCAAGGGAGAAGCTTTCTGAATTACATGGGGATTCTTTTATGGAACGATGCCCTTCTTGTGGAATTGA : GTATATGAGGGATTTTGAAATAGAAACTATTGGGTTGAAGGAAACTGCACGGCGTTGTTCCAAGGTGGGCTGTGGTGCAAGACTTAAAGACACAGTTCTTGACTGGGAG : GATGCTCTACCTCCAAAGGAGATGAATCCAGCTGAGAGACACTGCAAAATGGCTGATGTTGTGTTATGTCTAGGGACAAG : TTTGCAGATCACCCCTGCCTGTAATTTGCCTCTAAAATCACTCAAAGGCGGTGGAAAGATTGTAATAGTTAATCTTCAG : AAAACTCCCAAGGACAAGAAAGCAAGCCTACTGATTCATGGTCTTGTAGACAAG : GTTATCACAGGAGTCATGGAATTCCTCAGTCTGCGAATCCCACCTTTTATTAGAATTGATCTTCTCCAGACCATTTTTACTCAAGCCTCAAGTCTTG : ATGAAAAATATGTAAATTGGAGCCTTGCAGTGGCAAGCGTCCATGGAAATAGAGCACCATTGCCTTTTATCAAATCTGTAGAG : GTTTCTTTTTCAGAAAGTCAAAACATGAAAGCGGCTGTCCTGGATAAACAACCTCTTTATCTGAAAAG : GCGGACAGTTAAGAGTACAAATCCTTTTAACATTATGATGAAATTGAACTTCAGTGATGGTTGCAAGTGCTCATCGGCTGAAATCATGAT</gDNA_template>
            <first_frame> A  F  F  E  E  Y  S  S  A  S  N  S  L  V  I  N  Q  S  F  F  S  K  R  K  L  K  K  N  R  L  F  L  K  N  K  G  E  K  N  V  S  G  L  C  *  K  A  F  F  Y  R  R  C  G  Q  C  W  D  D  *  V  F  *  P  T  S  P  F  A  R  Q   : N  *  E  T  C  C  D  D  T  K   : E  *  A  F  S  G  V  Y  R  S  R  N  I  H  F  L  W  Y  T  *  F  S  W  S  Q  G  Y  L  D  S  S   : E  R  R  E  S  A  T  R  S  I  I  A  F  S  S  C  N  S  K  H  D  T  H  G  P  S  G  T  R  E  G  G  F  S  K  V  S  Y  K  P   : E  H  *  W  P  S  S  S  L  W  N  S  K  G  E  A  F  *  I  T  W  G  F  F  Y  G  T  M  P  F  L  W  N  *  :  V  Y  E  G  F  *  N  R  N  Y  W  V  E  G  N  C  T  A  L  F  Q  G  G  L  W  C  K  T  *  R  H  S  S  *  L  G   : G  C  S  T  S  K  G  D  E  S  S  *  E  T  L  Q  N  G  *  C  C  V  M  S  R  D  K  :  F  A  D  H  P  C  L  *  F  A  S  K  I  T  Q  R  R  W  K  D  C  N  S  *  S  S   : E  N  S  Q  G  Q  E  S  K  P  T  D  S  W  S  C  R  Q   : G  Y  H  R  S  H  G  I  P  Q  S  A  N  P  T  F  Y  *  N  *  S  S  P  D  H  F  Y  S  S  L  K  S  * :   *  K  I  C  K  L  E  P  C  S  G  K  R  P  W  K  *  S  T  I  A  F  Y  Q  I  C  R   : G  F  F  F  R  K  S  K  H  E  S  G  C  P  G  *  T  T  S  L  S  E  K  :  A  D  S  *  E  Y  K  S  F  *  H  Y  D  E  I  E  L  Q  *  W  L  Q  V  L  I  G  *  N  H  D </first_frame>
            <second_frame>  L  S  L  K  S  I  P  L  L  L  I  L  *  *  S  I  N  L  F  S  Q  R  E  N  *  R  R  T  D  C  S  *  R  T  K  G  K  K  M  S  L  G  Y  A  E  K  L  S  F  I  E  D  V  G  N  V  G  M  T  E  Y  F  D  P  P  L  L  L  Q  D  K  :  I  E  R  L  A  V  M  I  Q  K  :  S  K  H  L  V  V  F  T  G  A  G  I  S  T  S  C  G  I  P  D  F  R  G  P  K  G  I  W  T  L  Q  :  R  E  G  K  A  L  P  E  A  S  L  P  F  H  R  A  T  P  S  M  T  H  M  A  L  V  E  L  E  K  A  G  F  L  K  F  L  I  S  Q  :  N  I  D  G  L  H  L  R  S  G  I  P  R  E  K  L  S  E  L  H  G  D  S  F  M  E  R  C  P  S  C  G  I  E :   Y  M  R  D  F  E  I  E  T  I  G  L  K  E  T  A  R  R  C  S  K  V  G  C  G  A  R  L  K  D  T  V  L  D  W  E  :  D  A  L  P  P  K  E  M  N  P  A  E  R  H  C  K  M  A  D  V  V  L  C  L  G  T  S :   L  Q  I  T  P  A  C  N  L  P  L  K  S  L  K  G  G  G  K  I  V  I  V  N  L  Q  :  K  T  P  K  D  K  K  A  S  L  L  I  H  G  L  V  D  K  :  V  I  T  G  V  M  E  F  L  S  L  R  I  P  P  F  I  R  I  D  L  L  Q  T  I  F  T  Q  A  S  S  L   : D  E  K  Y  V  N  W  S  L  A  V  A  S  V  H  G  N  R  A  P  L  P  F  I  K  S  V  E  :  V  S  F  S  E  S  Q  N  M  K  A  A  V  L  D  K  Q  P  L  Y  L  K  R :   R  T  V  K  S  T  N  P  F  N  I  M  M  K  L  N  F  S  D  G  C  K  C  S  S  A  E  I  M   </second_frame>
            <third_frame>   F  L  *  R  V  F  L  C  F  *  F  F  S  D  Q  S  I  F  F  L  K  E  K  I  K  E  E  Q  I  V  P  E  E  Q  R  G  K  K  C  L  W  V  M  L  K  S  F  L  L  *  K  M  W  A  M  L  G  *  L  S  I  L  T  H  L  S  F  C  K  T  K :   L  R  D  L  L  *  *  Y  K  R :   V  S  I  *  W  C  L  Q  E  Q  E  Y  P  L  L  V  V  Y  L  I  F  V  V  P  R  V  F  G  L  F  R :   E  K  G  K  R  Y  Q  K  H  H  C  L  F  I  V  Q  L  Q  A  *  H  T  W  P  *  W  N  *  R  R  R  V  F  *  S  F  L  *  A  R :   T  L  M  A  F  I  F  A  L  E  F  Q  G  R  S  F  L  N  Y  M  G  I  L  L  W  N  D  A  L  L  V  E  L   : S  I  *  G  I  L  K  *  K  L  L  G  *  R  K  L  H  G  V  V  P  R  W  A  V  V  Q  D  L  K  T  Q  F  L  T  G  R :   M  L  Y  L  Q  R  R  *  I  Q  L  R  D  T  A  K  W  L  M  L  C  Y  V  *  G  Q   : V  C  R  S  P  L  P  V  I  C  L  *  N  H  S  K  A  V  E  R  L  *  *  L  I  F  R :   K  L  P  R  T  R  K  Q  A  Y  *  F  M  V  L  *  T  R :   L  S  Q  E  S  W  N  S  S  V  C  E  S  H  L  L  L  E  L  I  F  S  R  P  F  L  L  K  P  Q  V  L  :  M  K  N  M  *  I  G  A  L  Q  W  Q  A  S  M  E  I  E  H  H  C  L  L  S  N  L  *  R :   F  L  F  Q  K  V  K  T  *  K  R  L  S  W  I  N  N  L  F  I  *  K   : G  G  Q  L  R  V  Q  I  L  L  T  L  *  *  N  *  T  S  V  M  V  A  S  A  H  R  L  K  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0001N06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40104" stop="39988"/>
                    <exon start="38493" stop="38464"/>
                    <exon start="38372" stop="38280"/>
                    <exon start="37062" stop="36943"/>
                    <exon start="35633" stop="35533"/>
                    <exon start="35374" stop="35266"/>
                    <exon start="34957" stop="34878"/>
                    <exon start="34709" stop="34631"/>
                    <exon start="33961" stop="33908"/>
                    <exon start="33444" stop="33348"/>
                    <exon start="33125" stop="33043"/>
                    <exon start="31915" stop="31848"/>
                    <exon start="31160" stop="31073"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1119</number_coding_nucleotides>
                  <number_encoded_amino_acids>373</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTKGKKMSLGYAEKLSFIEDVGNVGMTEYFDPPLLLQDKIERLAVMIQKSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQREGKALPEASLPFHRATPSMTHMALVELEKAGFLKFLISQNIDGLHLRSGIPREKLSELHGDSFMERCPSCGIEYMRDFEIETIGLKETARRCSKVGCGARLKDTVLDWEDALPPKEMNPAERHCKMADVVLCLGTSLQITPACNLPLKSLKGGGKIVIVNLQKTPKDKKASLLIHGLVDKVITGVMEFLSLRIPPFIRIDLLQTIFTQASSLDEKYVNWSLAVASVHGNRAPLPFIKSVEVSFSESQNMKAAVLDKQPLYLKRRTVKSTNPFNIMMKLNFSDGCKCSSAEIM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="46155" PGL_stop="44601"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46155" e_stop="44601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="46155" e_stop="44601" e_length="1555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46155" stop="44601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTGTAAAAATACATTATTGTATAAGGTTCGTACCTGAACAATAAATTTGCAGTCACTTGAGATCTCACTTGCCCCAATAACAACTCCTTGAATTTCACACAGTCACCGGAGTTCTTCTTTCTCTTACAACACCGACATGCAGCTTCCGTCGTCGGCCACCGTGGCTGCGGTGGTTCTCTCCGTAGTCCTTTTTATTTGTGCCACTGAAGCTCATAACATTACTCACATTCTAGCCGACCATAAACAGTTCTCCACTTTCAACCATTACTTAACAACTACACACCTCGCCGCTGAAATTAACCGCCGGCAAACCATCACTGTTTGTGCTGTAGATAATGCCGGAATGTCAGATCTACTCTCCAAACAACTATCTATCTACACTATAAAAAACGTTCTCTCTTTTCACGTGCTTCTCGATTACTTCGACGCTAAAAAGCTTCACCAGATTACTAACGGCACGGCACTTGCCGCCACAATGTTTCAAGCTACCGGCTCAGCTACCGGATCTTCTGGATTCGTAAACATTACTGATCTAAGAGGAGGTAAAGTCGGGCTCAGTCCGGCTGATTACAACGGTCCTCCTCCGGCTAAATTTGTAAAATCAATCGCCGAGATTCCTTACAACATCTCCGTTATTCAAATAAGTACGATTTTACCCTCAGACGAAGCTGAAGCTCCGACTCCAGGACCAAGCCAAATGAATCTCACTTCTCTAATGTCAGCTAAAGGCTGCAAAGTTTTCGCCGAGACTCTATTAGCTTCTCCGGCTGAAAAAACGTTTGAGGATAACGTTGATGGCGGAGTAACAATATTTTGTCCACGAGATGATGCAATGAAGAAATTTTTGCCTAAATTTAAGAATTTAACAGCGGAAGGGAAGCAATCACTGCTCGAATATCATGGAATTCCTATATACCAATCGATTTCGAATTTGAAATCGAATAATGGAGATATGAACACTTTAGCTACTGACGGAGCTAAGAAGTACGCTGTAGTCATTCAAAATGACGGTGAAGATGTTACTATAAAAACGAAAATTGTGACGGCGAAGATCACGGCTACTGTGGTTGATAAACTGCCATTAGCGATTTACTCGCTTGATAAGGTGTTATTACCCGAGGAATTGTTCAAGGCTAGTCCTACTCCGGCGCCGGCGCCGGCACCGGAGGCACGTGCTGAATCTCCTAAGCACTCCAAGTCACCACCGGCACCTGCATCTCCGGCTGAGTCTCCAGCGGATTCTCCGGCGGATGGTCCCAACGGTGATGCTGATGATTTGACAGATAGCGGTGCTGTTAAGTACAATGCCGGAGCATCACTTGCCGCCGTTTTCAGTTTATGGTTTGCCTTCAACGTGTTGATGGAAGTTTGAAAAAGAATTTCATCAAATTAAAGTTAGTTACTGTATTATTAGTCTATTTCTCAGTTTTTAGATTTACTTCTTTGATTCTATTTGGAATTTTCATTAATGTAATATGAATCATTATTGACTTTTCAACCATTAATTATTATATGAAAAATTACGCGATTGAGTAGATTTATCCTCGGCATAA</gDNA_template>
            <first_frame> M  C  K  N  T  L  L  Y  K  V  R  T  *  T  I  N  L  Q  S  L  E  I  S  L  A  P  I  T  T  P  *  I  S  H  S  H  R  S  S  S  F  S  Y  N  T  D  M  Q  L  P  S  S  A  T  V  A  A  V  V  L  S  V  V  L  F  I  C  A  T  E  A  H  N  I  T  H  I  L  A  D  H  K  Q  F  S  T  F  N  H  Y  L  T  T  T  H  L  A  A  E  I  N  R  R  Q  T  I  T  V  C  A  V  D  N  A  G  M  S  D  L  L  S  K  Q  L  S  I  Y  T  I  K  N  V  L  S  F  H  V  L  L  D  Y  F  D  A  K  K  L  H  Q  I  T  N  G  T  A  L  A  A  T  M  F  Q  A  T  G  S  A  T  G  S  S  G  F  V  N  I  T  D  L  R  G  G  K  V  G  L  S  P  A  D  Y  N  G  P  P  P  A  K  F  V  K  S  I  A  E  I  P  Y  N  I  S  V  I  Q  I  S  T  I  L  P  S  D  E  A  E  A  P  T  P  G  P  S  Q  M  N  L  T  S  L  M  S  A  K  G  C  K  V  F  A  E  T  L  L  A  S  P  A  E  K  T  F  E  D  N  V  D  G  G  V  T  I  F  C  P  R  D  D  A  M  K  K  F  L  P  K  F  K  N  L  T  A  E  G  K  Q  S  L  L  E  Y  H  G  I  P  I  Y  Q  S  I  S  N  L  K  S  N  N  G  D  M  N  T  L  A  T  D  G  A  K  K  Y  A  V  V  I  Q  N  D  G  E  D  V  T  I  K  T  K  I  V  T  A  K  I  T  A  T  V  V  D  K  L  P  L  A  I  Y  S  L  D  K  V  L  L  P  E  E  L  F  K  A  S  P  T  P  A  P  A  P  A  P  E  A  R  A  E  S  P  K  H  S  K  S  P  P  A  P  A  S  P  A  E  S  P  A  D  S  P  A  D  G  P  N  G  D  A  D  D  L  T  D  S  G  A  V  K  Y  N  A  G  A  S  L  A  A  V  F  S  L  W  F  A  F  N  V  L  M  E  V  *  K  R  I  S  S  N  *  S  *  L  L  Y  Y  *  S  I  S  Q  F  L  D  L  L  L  *  F  Y  L  E  F  S  L  M  *  Y  E  S  L  L  T  F  Q  P  L  I  I  I  *  K  I  T  R  L  S  R  F  I  L  G  I  </first_frame>
            <second_frame>  C  V  K  I  H  Y  C  I  R  F  V  P  E  Q  *  I  C  S  H  L  R  S  H  L  P  Q  *  Q  L  L  E  F  H  T  V  T  G  V  L  L  S  L  T  T  P  T  C  S  F  R  R  R  P  P  W  L  R  W  F  S  P  *  S  F  L  F  V  P  L  K  L  I  T  L  L  T  F  *  P  T  I  N  S  S  P  L  S  T  I  T  *  Q  L  H  T  S  P  L  K  L  T  A  G  K  P  S  L  F  V  L  *  I  M  P  E  C  Q  I  Y  S  P  N  N  Y  L  S  T  L  *  K  T  F  S  L  F  T  C  F  S  I  T  S  T  L  K  S  F  T  R  L  L  T  A  R  H  L  P  P  Q  C  F  K  L  P  A  Q  L  P  D  L  L  D  S  *  T  L  L  I  *  E  E  V  K  S  G  S  V  R  L  I  T  T  V  L  L  R  L  N  L  *  N  Q  S  P  R  F  L  T  T  S  P  L  F  K  *  V  R  F  Y  P  Q  T  K  L  K  L  R  L  Q  D  Q  A  K  *  I  S  L  L  *  C  Q  L  K  A  A  K  F  S  P  R  L  Y  *  L  L  R  L  K  K  R  L  R  I  T  L  M  A  E  *  Q  Y  F  V  H  E  M  M  Q  *  R  N  F  C  L  N  L  R  I  *  Q  R  K  G  S  N  H  C  S  N  I  M  E  F  L  Y  T  N  R  F  R  I  *  N  R  I  M  E  I  *  T  L  *  L  L  T  E  L  R  S  T  L  *  S  F  K  M  T  V  K  M  L  L  *  K  R  K  L  *  R  R  R  S  R  L  L  W  L  I  N  C  H  *  R  F  T  R  L  I  R  C  Y  Y  P  R  N  C  S  R  L  V  L  L  R  R  R  R  R  H  R  R  H  V  L  N  L  L  S  T  P  S  H  H  R  H  L  H  L  R  L  S  L  Q  R  I  L  R  R  M  V  P  T  V  M  L  M  I  *  Q  I  A  V  L  L  S  T  M  P  E  H  H  L  P  P  F  S  V  Y  G  L  P  S  T  C  *  W  K  F  E  K  E  F  H  Q  I  K  V  S  Y  C  I  I  S  L  F  L  S  F  *  I  Y  F  F  D  S  I  W  N  F  H  *  C  N  M  N  H  Y  *  L  F  N  H  *  L  L  Y  E  K  L  R  D  *  V  D  L  S  S  A  * </second_frame>
            <third_frame>   V  *  K  Y  I  I  V  *  G  S  Y  L  N  N  K  F  A  V  T  *  D  L  T  C  P  N  N  N  S  L  N  F  T  Q  S  P  E  F  F  F  L  L  Q  H  R  H  A  A  S  V  V  G  H  R  G  C  G  G  S  L  R  S  P  F  Y  L  C  H  *  S  S  *  H  Y  S  H  S  S  R  P  *  T  V  L  H  F  Q  P  L  L  N  N  Y  T  P  R  R  *  N  *  P  P  A  N  H  H  C  L  C  C  R  *  C  R  N  V  R  S  T  L  Q  T  T  I  Y  L  H  Y  K  K  R  S  L  F  S  R  A  S  R  L  L  R  R  *  K  A  S  P  D  Y  *  R  H  G  T  C  R  H  N  V  S  S  Y  R  L  S  Y  R  I  F  W  I  R  K  H  Y  *  S  K  R  R  *  S  R  A  Q  S  G  *  L  Q  R  S  S  S  G  *  I  C  K  I  N  R  R  D  S  L  Q  H  L  R  Y  S  N  K  Y  D  F  T  L  R  R  S  *  S  S  D  S  R  T  K  P  N  E  S  H  F  S  N  V  S  *  R  L  Q  S  F  R  R  D  S  I  S  F  S  G  *  K  N  V  *  G  *  R  *  W  R  S  N  N  I  L  S  T  R  *  C  N  E  E  I  F  A  *  I  *  E  F  N  S  G  R  E  A  I  T  A  R  I  S  W  N  S  Y  I  P  I  D  F  E  F  E  I  E  *  W  R  Y  E  H  F  S  Y  *  R  S  *  E  V  R  C  S  H  S  K  *  R  *  R  C  Y  Y  K  N  E  N  C  D  G  E  D  H  G  Y  C  G  *  *  T  A  I  S  D  L  L  A  *  *  G  V  I  T  R  G  I  V  Q  G  *  S  Y  S  G  A  G  A  G  T  G  G  T  C  *  I  S  *  A  L  Q  V  T  T  G  T  C  I  S  G  *  V  S  S  G  F  S  G  G  W  S  Q  R  *  C  *  *  F  D  R  *  R  C  C  *  V  Q  C  R  S  I  T  C  R  R  F  Q  F  M  V  C  L  Q  R  V  D  G  S  L  K  K  N  F  I  K  L  K  L  V  T  V  L  L  V  Y  F  S  V  F  R  F  T  S  L  I  L  F  G  I  F  I  N  V  I  *  I  I  I  D  F  S  T  I  N  Y  Y  M  K  N  Y  A  I  E  *  I  Y  P  R  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0001N06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46062" stop="44782"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1278</number_coding_nucleotides>
                  <number_encoded_amino_acids>426</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISHSHRSSSFSYNTDMQLPSSATVAAVVLSVVLFICATEAHNITHILADHKQFSTFNHYLTTTHLAAEINRRQTITVCAVDNAGMSDLLSKQLSIYTIKNVLSFHVLLDYFDAKKLHQITNGTALAATMFQATGSATGSSGFVNITDLRGGKVGLSPADYNGPPPAKFVKSIAEIPYNISVIQISTILPSDEAEAPTPGPSQMNLTSLMSAKGCKVFAETLLASPAEKTFEDNVDGGVTIFCPRDDAMKKFLPKFKNLTAEGKQSLLEYHGIPIYQSISNLKSNNGDMNTLATDGAKKYAVVIQNDGEDVTIKTKIVTAKITATVVDKLPLAIYSLDKVLLPEELFKASPTPAPAPAPEARAESPKHSKSPPAPASPAESPADSPADGPNGDADDLTDSGAVKYNAGASLAAVFSLWFAFNVLMEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="50182" PGL_stop="49475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50182" e_stop="49475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50182" e_stop="49475" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50182" stop="49475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAATATTGTTTTCCGGCCACCGGAATATTCTATTCTTTCTCAATTTCACCGGAATATTCTGCTCTTTCTCATTTTCTTAGCACTGCAATATGTCTAAATTATTTGGCACTGTTGTTGTACTTTTTCTCGTGTTAAATTCCGGTGAAGCGCAAAATGCACCTTCTCAATCCCCAATTTCTTCTCCCTCTAAATCACCGGCGGTAAAATCACAAGCACCGGTTTCTTCCCCGACTAAATCACCGGCAGTGAGATCTCAAGCACCGGTTTCTTCGCCCTCGGCTCCTACGATTAGCCCGTCTGCAGCGCCGGTACAGTCACCGAAAGCAGCTTCTCCAGTAACCAGCGTTTCACCCGCACTCACTCCGTCAATCAGTAGATCTGCTCCGGTTCCTTCTGTTGCAACTCCTCCGCCGGTATCAACGCCGGTGAGCACTCCGGCATCTTCCCCGGCAGCAGCGGATGTTCCGGCCAGCACTGCGACACCGTCAGTATCCCCAAGCATACCTTCAAGTTCAGCAAGTCCGGCGGAGTCTGTTGACGGACCTACTACGGCGCCGGCGAGTTTATCACCGGGAACTTCACCAGCACCCGTTGCTGATGATGTTTCCGCTGCAATTTCAGTGTTGAAAGTGCCGATGGTTCTAAGTGGGCTTGCTATTTGGGCCGCACTTTCAATTTGAATGCATCCGGCCCAATGTTGCACAAA</gDNA_template>
            <first_frame> L  N  I  V  F  R  P  P  E  Y  S  I  L  S  Q  F  H  R  N  I  L  L  F  L  I  F  L  A  L  Q  Y  V  *  I  I  W  H  C  C  C  T  F  S  R  V  K  F  R  *  S  A  K  C  T  F  S  I  P  N  F  F  S  L  *  I  T  G  G  K  I  T  S  T  G  F  F  P  D  *  I  T  G  S  E  I  S  S  T  G  F  F  A  L  G  S  Y  D  *  P  V  C  S  A  G  T  V  T  E  S  S  F  S  S  N  Q  R  F  T  R  T  H  S  V  N  Q  *  I  C  S  G  S  F  C  C  N  S  S  A  G  I  N  A  G  E  H  S  G  I  F  P  G  S  S  G  C  S  G  Q  H  C  D  T  V  S  I  P  K  H  T  F  K  F  S  K  S  G  G  V  C  *  R  T  Y  Y  G  A  G  E  F  I  T  G  N  F  T  S  T  R  C  *  *  C  F  R  C  N  F  S  V  E  S  A  D  G  S  K  W  A  C  Y  L  G  R  T  F  N  L  N  A  S  G  P  M  L  H  K </first_frame>
            <second_frame>  *  I  L  F  S  G  H  R  N  I  L  F  F  L  N  F  T  G  I  F  C  S  F  S  F  S  *  H  C  N  M  S  K  L  F  G  T  V  V  V  L  F  L  V  L  N  S  G  E  A  Q  N  A  P  S  Q  S  P  I  S  S  P  S  K  S  P  A  V  K  S  Q  A  P  V  S  S  P  T  K  S  P  A  V  R  S  Q  A  P  V  S  S  P  S  A  P  T  I  S  P  S  A  A  P  V  Q  S  P  K  A  A  S  P  V  T  S  V  S  P  A  L  T  P  S  I  S  R  S  A  P  V  P  S  V  A  T  P  P  P  V  S  T  P  V  S  T  P  A  S  S  P  A  A  A  D  V  P  A  S  T  A  T  P  S  V  S  P  S  I  P  S  S  S  A  S  P  A  E  S  V  D  G  P  T  T  A  P  A  S  L  S  P  G  T  S  P  A  P  V  A  D  D  V  S  A  A  I  S  V  L  K  V  P  M  V  L  S  G  L  A  I  W  A  A  L  S  I  *  M  H  P  A  Q  C  C  T   </second_frame>
            <third_frame>   E  Y  C  F  P  A  T  G  I  F  Y  S  F  S  I  S  P  E  Y  S  A  L  S  H  F  L  S  T  A  I  C  L  N  Y  L  A  L  L  L  Y  F  F  S  C  *  I  P  V  K  R  K  M  H  L  L  N  P  Q  F  L  L  P  L  N  H  R  R  *  N  H  K  H  R  F  L  P  R  L  N  H  R  Q  *  D  L  K  H  R  F  L  R  P  R  L  L  R  L  A  R  L  Q  R  R  Y  S  H  R  K  Q  L  L  Q  *  P  A  F  H  P  H  S  L  R  Q  S  V  D  L  L  R  F  L  L  L  Q  L  L  R  R  Y  Q  R  R  *  A  L  R  H  L  P  R  Q  Q  R  M  F  R  P  A  L  R  H  R  Q  Y  P  Q  A  Y  L  Q  V  Q  Q  V  R  R  S  L  L  T  D  L  L  R  R  R  R  V  Y  H  R  E  L  H  Q  H  P  L  L  M  M  F  P  L  Q  F  Q  C  *  K  C  R  W  F  *  V  G  L  L  F  G  P  H  F  Q  F  E  C  I  R  P  N  V  A  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0001N06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50100" stop="49501"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HCNMSKLFGTVVVLFLVLNSGEAQNAPSQSPISSPSKSPAVKSQAPVSSPTKSPAVRSQAPVSSPSAPTISPSAAPVQSPKAASPVTSVSPALTPSISRSAPVPSVATPPPVSTPVSTPASSPAAADVPASTATPSVSPSIPSSSASPAESVDGPTTAPASLSPGTSPAPVADDVSAAISVLKVPMVLSGLAIWAALSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="60384" PGL_stop="61021"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60384" e_stop="61021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="60384" e_stop="61021" e_length="638"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60384" stop="61021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340127" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGCTGAGCTGAGCAAGTATGGACACGTGAAGGAGGTGAAATTTTTTGAAGAAAAAGCTAGTGGGAAGTCTAAAGGATATTGCCAGGTTGAGTTTCATGATTCCTCAGCTGCCACAGCTTGCAAGGAAAGTATGAATGGACATATGTTCAATGGGCGACCATGTGTAGTCGCTTATGCATCATCACCGTATAATGTGAAGAGGATGGGTGAGGCTCAGGTGAATCGAAATCAGCAGGTGGCTCAAACTGCTGTTCCCCAAGCAAGGCGGGGGCCTGGTGAAGCTGCTGGTAAAATTGGAAATAACAACACTCCTACTGGTGGCAATTATCAAGGCGGCGGTGGTGGTGGGGATGGCAACAGGGGGGGTTATGGTAGAGGCAGTTGGGGTAGAGGAGGTCCTCAAGCTATGGGAAATCGGGGGCCTGTAGGTCCTATGAGAAACAGGCCTGGTGGGATTGCAGGTAGGGGTATGATGGGTAACGGTGGAGGTGGATTTGGACAAGGTATGGGTGGTGCACCTCCTATTATGCATCCTCAAACAATGATGGGTCAAGGCTTTGATCCTGCTTTTGGAGGGCCTATGGGGAGAATGGGTGGTTATGGAGGATTTCCTGGTGGTCCAGCTCCACCATTTCC</gDNA_template>
            <first_frame> E  A  E  L  S  K  Y  G  H  V  K  E  V  K  F  F  E  E  K  A  S  G  K  S  K  G  Y  C  Q  V  E  F  H  D  S  S  A  A  T  A  C  K  E  S  M  N  G  H  M  F  N  G  R  P  C  V  V  A  Y  A  S  S  P  Y  N  V  K  R  M  G  E  A  Q  V  N  R  N  Q  Q  V  A  Q  T  A  V  P  Q  A  R  R  G  P  G  E  A  A  G  K  I  G  N  N  N  T  P  T  G  G  N  Y  Q  G  G  G  G  G  G  D  G  N  R  G  G  Y  G  R  G  S  W  G  R  G  G  P  Q  A  M  G  N  R  G  P  V  G  P  M  R  N  R  P  G  G  I  A  G  R  G  M  M  G  N  G  G  G  G  F  G  Q  G  M  G  G  A  P  P  I  M  H  P  Q  T  M  M  G  Q  G  F  D  P  A  F  G  G  P  M  G  R  M  G  G  Y  G  G  F  P  G  G  P  A  P  P  F   </first_frame>
            <second_frame>  K  L  S  *  A  S  M  D  T  *  R  R  *  N  F  L  K  K  K  L  V  G  S  L  K  D  I  A  R  L  S  F  M  I  P  Q  L  P  Q  L  A  R  K  V  *  M  D  I  C  S  M  G  D  H  V  *  S  L  M  H  H  H  R  I  M  *  R  G  W  V  R  L  R  *  I  E  I  S  R  W  L  K  L  L  F  P  K  Q  G  G  G  L  V  K  L  L  V  K  L  E  I  T  T  L  L  L  V  A  I  I  K  A  A  V  V  V  G  M  A  T  G  G  V  M  V  E  A  V  G  V  E  E  V  L  K  L  W  E  I  G  G  L  *  V  L  *  E  T  G  L  V  G  L  Q  V  G  V  *  W  V  T  V  E  V  D  L  D  K  V  W  V  V  H  L  L  L  C  I  L  K  Q  *  W  V  K  A  L  I  L  L  L  E  G  L  W  G  E  W  V  V  M  E  D  F  L  V  V  Q  L  H  H  F  </second_frame>
            <third_frame>   S  *  A  E  Q  V  W  T  R  E  G  G  E  I  F  *  R  K  S  *  W  E  V  *  R  I  L  P  G  *  V  S  *  F  L  S  C  H  S  L  Q  G  K  Y  E  W  T  Y  V  Q  W  A  T  M  C  S  R  L  C  I  I  T  V  *  C  E  E  D  G  *  G  S  G  E  S  K  S  A  G  G  S  N  C  C  S  P  S  K  A  G  A  W  *  S  C  W  *  N  W  K  *  Q  H  S  Y  W  W  Q  L  S  R  R  R  W  W  W  G  W  Q  Q  G  G  L  W  *  R  Q  L  G  *  R  R  S  S  S  Y  G  K  S  G  A  C  R  S  Y  E  K  Q  A  W  W  D  C  R  *  G  Y  D  G  *  R  W  R  W  I  W  T  R  Y  G  W  C  T  S  Y  Y  A  S  S  N  N  D  G  S  R  L  *  S  C  F  W  R  A  Y  G  E  N  G  W  L  W  R  I  S  W  W  S  S  S  T  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0001N06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60384" stop="61019"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAELSKYGHVKEVKFFEEKASGKSKGYCQVEFHDSSAATACKESMNGHMFNGRPCVVAYASSPYNVKRMGEAQVNRNQQVAQTAVPQARRGPGEAAGKIGNNNTPTGGNYQGGGGGGDGNRGGYGRGSWGRGGPQAMGNRGPVGPMRNRPGGIAGRGMMGNGGGGFGQGMGGAPPIMHPQTMMGQGFDPAFGGPMGRMGGYGGFPGGPAPPF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 8528 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2132 bytes was the average size of a spliced alignment
$ 9440 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2360 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 9 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-03 20:40:34
-->
