<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-10 08:46:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0023C09-wx1xK/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-G74Xcc/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-G74Xcc/sgn_marker_seqs" ref_id="SGN-M7360" ref_strand="+" ref_description="SGN-M7360 C2_At2g30920 [cosii_markers]">
      <seq>gttttgaaccgactgagatctctctgtagagtctctcaactcagcgacgtccgttttgataaactcagagacccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctcctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccaaattctctgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaaggatccaaattgcactagaccttttgaaggactgaagtttgttgatgttggttgtggaggcggaattttatctgagcctttggctcgaatgggagctacggtcacgggagttgatgctgtggacaaaaatattaagattgctcgccttcatgcggatttggatccacaaacttcttcaattgaatatcggtgcacaacagctgaaagcctggttgaagaacagagacaattcgatgctgtgattgcgctagaggtgattgagcatgtagcagatcctgctggattctgcaaatcattatcagcgttgaccattcctggtggtgctacagtgatatcaacgattaatcgttcaatgagagcatatgcaacggcaattgttgcagcagagtatctcctacattggcttccaaaaggtacacatcaatggtcaagctttctaaccccagaagaactagtcctcattcttcagcgcgcttctatatcggtgcaagagatggctggatttgtgtacaaccctttgacgggtcgctggtccttgtccgatgacatcagtgttaatttcatcgctttcggaacaaaatcagccaagaaggatgaaactctagattaagttacgatatagctgtcaattttattctgctgttaatctcttaacccattctgtatgtaatctctttttcagttttgttggatgatgaatgcaatttctatatgttagaatatgaacatccacatcacaagttcttaacttgaatgaaaatgtaccatttcgaaatttcaaatacatgtgtattatctttgattgataaaatttgtaacttcataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0023C09-wx1xK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0023C09.1" temp_strand="-" temp_description="C07HBa0023C09.1  AC210349.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0023C09 upload_account_name:france">
        <position start="7627" stop="899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7327" g_stop="7074" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7073" i_stop="6679" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6678" g_stop="6589" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="344" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6588" i_stop="6088" i_length="501">
            <donor d_prob="0.373" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6087" g_stop="6009" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="423" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6008" i_stop="5787" i_length="222">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5786" g_stop="5709" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="501" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5708" i_stop="4320" i_length="1389">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4319" g_stop="4271" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="550" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4270" i_stop="3117" i_length="1154">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3116" g_stop="3067" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="600" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3066" i_stop="2343" i_length="724">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2342" g_stop="2193" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="750" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2192" i_stop="1728" i_length="465">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="1727" g_stop="1647" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="831" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1646" i_stop="1542" i_length="105">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1541" g_stop="1204" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="832" r_stop="1169" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1170" polyA_stop="1194"/>
      <MATCH_line gen_id="C07HBa0023C09.1" gen_strand="-" ref_id="SGN-M7360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1169</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0023C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7327" e_stop="7074"/>
          <exon e_start="6678" e_stop="6589"/>
          <exon e_start="6087" e_stop="6009"/>
          <exon e_start="5786" e_stop="5709"/>
          <exon e_start="4319" e_stop="4271"/>
          <exon e_start="3116" e_stop="3067"/>
          <exon e_start="2342" e_stop="2193"/>
          <exon e_start="1727" e_stop="1647"/>
          <exon e_start="1541" e_stop="1204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAGGTAGTATTGAGGATGTAATGTCTGAAAGATTAGATTGCATATAAAGAGTTATCTCATATTTCATTTAGTACTTGTTGGCGTTCTCTATTTTTAGGACCAATGTTTGATGCTTGTATAATAATGTTGGAGTTGAAGAGATTATGTCGCTTGTGTTAGAGAAGGATTTAGCTAGATTTGTTGTTCATATTCTTCTTTTCGCGAACTATACTTATATTTGCTCTTATGAGGGAATTTCATGATTTGAATGGACATTCTTTTGGCCTTTGCTGGTCTGAGACTAGAGGTGGTTGTTAGGAAAGGAATTAATAGTACAGTATGGGAGAAAAGGGGAAAGGAAATGTAATATGAATAGGAGCTTATAAATAGCACTATTGGATAGAGAAGGTAATGGATAAGCAAAAGGAGAGTATAGCTGAGAAAGGATCCAAATTTCCCTAGGAGCTCCACCTTATTTTCACTCTTCTTGCATCTCTGGAGGCTAAAACTTTTGTATTGTATCAGAAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAGGTATACATTTGTCAAGCTTAATATTCTATTGGAGTCACCTTTACCTTTGCATATGGCAGAATATTTTTCTCCTGTGATTACCATTATTAGCCTAGTATTTTTCTAAGTGCTATTGTTAGCTTAGTTAGACTTAGACAATGTCTTTGTCACTCAATGAAGTGAATATTTATATTAAGCATGCGGCATATAGTCACACACATCTCATTTTTACTCTTAATTCAGCCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCGGTATGTTTACTTGAATGTTTCCAGGATGCACCATTAAACTGCTGTTTTTTTTTTTGCTTGTCTGGTTAATGTACAGTTTAAGGATCTTCCCATACCTGAGATATCATGAGTATTGGCATCAAAATTTACTAGTCTTATATTGATTCGGAGTTTATTGGTTCCTCACCTTGAGGGACACATACAATTTTGCTTCGTCAAATTATAGTTCATTTGAAGGTCACAGTGCTTATGATGGAAGAAAAGTTAAAAATTTAGAAGGGTTTTGAACTGATAACTTGAATGTTCATTGCCTAATTATAGTTAGTCATACTGACAACAAGTGCAAGAAAAAATTCATACGATGTTTATTCATCTTGGTTCAAATCCTACTTAGAGGTCCACTAGAGATAAAAATATGTTGAAGAAACAAGATCTTTCTTTTGATTCCTTTTAGGCAATTTGAAAATTAAAGAAATGGTCAAAGCCTAGGCATCATCGGGTGGAGATGAATCAATAGATTGGGGTTCATTAGGACCAGTGTCTTGTGCTTCCAGGATAGAAATCCTGTTGTTAGTCTCACAGCCGATGTTGTACATTACTACACATTAGAAGGTCCATGGGTTGGCAAGTTACCTATTTAGTAAAGATAGAACTAGACGTTTTGTATAGATTCTGTTATATTTTAAAGAAAATGGCACAGCTCTTTTTGCCTCTTCCACTGTATGAGTTTTCCTTTTTGCACAAACTGGGAACAAGCCAGATAGTTCCTTTATGCTATTGTTTCCCTGCACTCATATATGCTGTGATGTTCTGGAGCTTCACCGACAAAATTTGCACCAAGGCGTTCCCATGGTTGATATACTAAAACCAAAAGGGTGTAAAGTTAAATCATGTTCAAAAGATCGCATTTAAGTTGCAAAAATACCTAATTTTAGTCCATGTGGCTGTGTTGTCTTGGTATTCAATATAATATGTGTAGGATATTAACTCCTGGTATATGTATTCAACCAATATTATTGACTTCCTTAATTTTTTTTATCCAAAAAAATATTTTCAGTATATCCTTATATATATAATATATGTGCTTGTCCTTCCAACAGCCTAAGCAAAACTCTTGAGCCTGTGTCAAAATTTTCAAGGACTATTGTGTCTTTATGCAACAACAGAAGTTCTAGAACCTACTAGAGCATATTCTCTAAAATAATGTTGTTGATGAAGTAGTTGAAGCAATTTCGTAGAACTAATATACTTTCATTATATACAATGGTAGGATTAGCACATATCTCAGCAATAGATTTGCTGTTTGTTAAGCTAGAGTGCTATTTTAAACAGATAGTTTTTGAATTGTGACAGTCAAACCCGTATACATTCTATATGGTGGATGCTTATGAATGCTGATATTTCTTTCAGGATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTGGTACATGCCATACTTGTTTGATGAGAATTTAGTCCAAATATTGGTGACTTCTATATGTGCATGTTAATCTTTCATCTCGATGTACAATGAACAGACATTATCTTTTCTTTTTTATCATGTTGGTGCCTTCTTTAGTAAAGAATAGGAAAACGAGTCTGCATAACATCGGTTTTTGTTATGAATCATGTTAATGATCAAGCACTGGTTTAATCATGCTCAACTTATCAAATAGAAATGAATTTTTGGCATCTTAGCAAAGCCTCACTTTCTTTCCAAAATAGTTGAAGTGACAGATGACCAACTTGTTGTATGTTATTGCAATCTCCATTTGCAATTTTTATTTGTTGTAGTTCCAATTTAAGCTGCAATAGTGTGAAATTACTGCCGTTTAGTTGCATGAACCATAACAGAGACTCCTAGGGTAATTCATGGTCAATTATTATCACTGGTTAACCTCCTCCTCCTTTATGGAGAGTATGGAAGGTGGGTAATTGGTCATGATTGCATACTAATTAGTTGCAGCTTCATGATAATTCAGCTTTGTAGTTGTTATAACCCCTAATTTCCGTTTTCACTCAACTGTGTGGTTGGTTATTTTCTCGCTGTGAAAACTTAGCTGAATTATCATGTGTTCAATGATTGGAACTGTTTTTGGACTTGCAAAAATATCAGTGTGTGAGATTCCTGGTGAAAAAAAAGATATGTGCTTTGATGATTTTGTGGTGAACTTAGTTGCTTCTGTGTCTGTGATTTAGATTCTTTAGACTCTTTTCTTTGTAGTTATGTCCTCTTTCCTGGAAAAAAAACATATCCATCTCATTTTATAGTAGAAAAAAGACCTTTTTCAAGACAACTTGTGCCTAATTAAGTTACATACCAGCTACTTAAAATGTTAAAGGAAATCATGAATCAAGCTCAAGTGTTTTAGTTATATGGAGATTAGTCTATGTCACAAGGACATGGAATTTTTAATGATTTTGTTCTTGTTTATGTTGTTACGTACTTTTCAGCTATGGTGTATAACAATTTTAGCTATTGACACATCTGTTGATTTGAAGAAAAACGAATTCTCTTGTTTTATTTAAAATCTCAATTTAGTTGAATATCAAAGATTGTTCTTCGAAGAATGACCCTATTGAATGTTATGTCGACAGAAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAGGTATGACTTAATAAGTGATAAGCTAACTTTGTTCAAAGATTTATTATCTTCAGTACAATCCATCTGTTTTAGTAGATTGTACTTATATCATTTGTACCTTTTGCTTTGCAAAACTTCCACTATTTATTTGAAGTTAACATAGTACATTGTATAAAAGGCTTGGTCCTTTAAGCAGTTCTATGCTTTTATAGCTTTGTTGCACTTGCTCAAGTCTAATAACTGGCACCCAGGGGTGTGGTCTAGAGGTCAATGGAGTGGGTGAAAACCTTGGAGAGTAGGAGTCAAATCCTAACAAATACCACAATGCTAGGTGATTTCTTTCTATTTGCTGAAGCCTTTGTGGGCAGAGTTACCTGATTCATGTGCTGGTGAAAGGTTGCAGGTACCCGTTGGAATAATCTAGGTCCTCTTGTAAAAGGTAGCAGGTATCTGTTAGAAAAGTCAAGGTCCGCGCAAGCTTACCTGACCATCTTTTAGAAAGTCTAGTAATTGGAGGCTTTTAGAGCTCTCACAGGTCTGTTACACAGGGACAGATACTGACACAGATGGAGGGATGTATGTGATATGATCTCTTCTAGTATGTGTATCTAAGGAATTCTGACTGGTGATGTAAAAATGTAACAACTGGGGCAATATCGAAGTATTCTAATCTCCCCTCTTAAGAGGACCCAACTTCCGATCTGATCTCTTCTAGTATGTGTATCTTATTCTGCCTCTTTTGTAGGTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGGGTAAATATATTTAGTGGATCTTCTAAATTGTATTGGTAATTTTTGGTTGATGCCTTGCAAAACTTAAATGATATTTGTGCATGTGAGATTTGCTAGTTCACTTTGAACAAATAGAGGAAGGTGTATGAAAGGTGTGTCTAGATAGTTCTATGTATTGTTATTCTCTCGCACAAATCGAACTTCCAATTTATGTTGGAGCATTTAATTTGATTCAAATTTGATTATGCTTCAAAGTATTCCAATTACGTTTTGAGGACTCATTTTGCTCTATTTGTTAGGATTCATCTCGATGATATATACTAGCATTATCTGTACATAATAGCAGCCATGTCAAAAGGCAATTTTCTACTAATTGTTGTGTTCTTGTCAGCCATGCTTCCTATGTCTCTGTGTGTGTGTTTCTTGCATTTCTTTTTGGAGGGTTGTACAATTGCAAATTGCTAATGTTATAACTGGACTTTACAGCTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCCAGAAGAACTAGTCCTCATTCTTCAGCGCGCTTCTATATCGGCAAGTGGATTAAACATGCTTCTCTGTTTTTCACCTGTATCTTAATCAAGTCAATATCTATCTGTTTGCGCCCATTTGAAACAGTAATCTTTCTGCATTTTACAGGTGCAAGAGATGGCTGGATTTGTGTACAACCCTTTGACGGGTCGCTGGTCCTTGTCCGATGACATCAGTGTTAATTTCATCGCTTTCGGAACAAAATCAGCCAAGAAGGATGAAACTCTAGATTAAGTTACGATATAGCTGTCAATTTTATTCTGCTGTTAATCTCTTAACCCATTCTGTATGTAATCTCTTTTTCAGTTTTGTTGGATGATGAATGCAATTTCTATATGTTAGAATATGAACATCCACATCACAAGTTCTTAACTTGAATGAAAATGTACCATTTCGAAATTTCAAATACATGTGTATTATCTTTGATTGATAAAATTTGTAACTTC</genome_strand>
        <mrna_strand>GTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG..............................................................................................................................................................................................................................CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCCAGAAGAACTAGTCCTCATTCTTCAGCGCGCTTCTATATCG.........................................................................................................GTGCAAGAGATGGCTGGATTTGTGTACAACCCTTTGACGGGTCGCTGGTCCTTGTCCGATGACATCAGTGTTAATTTCATCGCTTTCGGAACAAAATCAGCCAAGAAGGATGAAACTCTAGATTAAGTTACGATATAGCTGTCAATTTTATTCTGCTGTTAATCTCTTAACCCATTCTGTATGTAATCTCTTTTTCAGTTTTGTTGGATGATGAATGCAATTTCTATATGTTAGAATATGAACATCCACATCACAAGTTCTTAACTTGAATGAAAATGTACCATTTCGAAATTTCAAATACATGTGTATTATCTTTGATTGATAAAATTTGTAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-G74Xcc/sgn_marker_seqs" ref_id="SGN-M4003-2" ref_strand="+" ref_description="SGN-M4003-2 C2_At2g42810-2 [cosii_markers]">
      <seq>ctttagcaaagtctcagtcttctttgacaaacccccaaagcgccataaaaagagtgttcatgaaaattccagtattgtgattccgcacgcaacacctacccagccagcctccagtcgccattgttatgcccggtatggaaactgagaactcaaacacctcccgagctgaagaactcaagcaactcgcaaatgaagcattcaaagggcataagtattcgcaagctattgatctgtacacacaagcaattgagttgaacggtgagaatgcggtgtactatgctaaccgtgcctttgctcacaccaaattggaggaatatggcagcgcaatacaggatggaactagagctattgaaattgaccctagatattcaaagggttattataggcgaggagctgcatatttggcaatggggaagttcaaagacgcactcaaggattttcaacaggtcaagaagttatgtccaaacgacccagatgctgccaaaaaattgaaggaatgtgagaaagctgtcatgaagctgaaatttgaagaagctatttctgtcccagaatctcagagacgttcagtagctgactctattgattatcattccgtagaggtagagcctcaatatgctggtgcaagaatagagggagatgtcgtaacattagattttgtgaagaagatgttggatgacttcaaaaaccagaagaatttacacaagaggtatgcctaccaaatagtactgcaaacaagagaaatgttgcgagcattgccctcccttgttgacattgttgttcccgcagggaagcacttcactgtatgtggtgatgtacatggtcagttttatgacctcctaaatattttcgagctcaatgggcttccatcagaagacaatccgtatctgttcaatggtgattttgttgatagagggtctttctctctagaggtcatattgacattattcgccttcaagtgcatgtgtccatcagctatacaccttgcgagaggaaatcatgaaagcaagagcatgaacaaaatatatgggtttgagggcgaggtcagatccaagttaagtgaaatatttgtggaactctttgcagaagtgttctgttgcttacctttggcccatgtcataaatgagaaagtctttgtagtacatggaggtctttttagtgttgatggcgtgaagctctctgatattagagcaattgatcggttttgtgagcccccggaggaggggttaatgtgtgaattgttgtggagtgatccacaacctcagcctggtagaggacctagtaaacgaggtgttggtctttctttcgggggagacgtaactaaaagattcttgcaggaaaataatctagatttagtggtccgatctcatgaagtgaaggatgaaggttatgagattgaacatgatggcaaactcataacagtgttttccgctccaaattactgtgaccagatgggtaacaagggtgcttttatacggtttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcccgatgtcaagccaatggcatatgccaacaacttccttcggatgttttcttaaaactctgaaacctaacgttcagtattacaatcgattagaccttttgtcacactgaccaagagcatacacatcaggaggcagaagagctagtacttacacagccaattagctgcagtgtcattatttggacaacttcctgacttgcccgcagcttctgaggatcctcacctcctttgttttgattaaggtgtaaacacttgtctacaataacaatgtcgtgtggtggattgtcctctgtattgtttatgttcctatttgtaagattgtcacacttctcatttctcttagataatttccaaattgggaagctttgatacgtcgaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0023C09-wx1xK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0023C09.1" temp_strand="-" temp_description="C07HBa0023C09.1  AC210349.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0023C09 upload_account_name:france">
        <position start="19180" stop="8783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18880" g_stop="18677" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18676" i_stop="18593" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18592" g_stop="18423" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="374" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18422" i_stop="18338" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18337" g_stop="18266" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="446" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18265" i_stop="17674" i_length="592">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17673" g_stop="17523" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="597" r_length="151" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17522" i_stop="14734" i_length="2789">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14733" g_stop="14625" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="706" r_length="109" r_score="0.945"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14624" i_stop="14544" i_length="81">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14543" g_stop="14426" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="824" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14425" i_stop="12810" i_length="1616">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12809" g_stop="12662" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="972" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="12661" i_stop="11806" i_length="856">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="11805" g_stop="11557" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="973" r_stop="1221" r_length="249" r_score="0.984"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="11556" i_stop="11044" i_length="513">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="11043" g_stop="10918" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1222" r_stop="1347" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="10917" i_stop="10786" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="10785" g_stop="10685" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1348" r_stop="1448" r_length="101" r_score="0.941"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="10684" i_stop="9684" i_length="1001">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="9683" g_stop="9609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1449" r_stop="1523" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="9608" i_stop="9448" i_length="161">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="9447" g_stop="9099" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1524" r_stop="1872" r_length="349" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1905" polyA_stop="1923"/>
      <MATCH_line gen_id="C07HBa0023C09.1" gen_strand="-" ref_id="SGN-M4003-2" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>1872</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0023C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4003-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18880" e_stop="18677"/>
          <exon e_start="18592" e_stop="18423"/>
          <exon e_start="18337" e_stop="18266"/>
          <exon e_start="17673" e_stop="17523"/>
          <exon e_start="14733" e_stop="14625"/>
          <exon e_start="14543" e_stop="14426"/>
          <exon e_start="12809" e_stop="12662"/>
          <exon e_start="11805" e_stop="11557"/>
          <exon e_start="11043" e_stop="10918"/>
          <exon e_start="10785" e_stop="10685"/>
          <exon e_start="9683" e_stop="9609"/>
          <exon e_start="9447" e_stop="9099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGCAAAGTCTCAGTCTTCTTTGACAAACCCCCAAAGCGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAGGTAAATTCAATATACACAAACTTGAGGTTGTATCATGTGGATTTATGAATAATAAGTCTGTTTATGATTTCAATGTGTTTTCAGGGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAGGTAAGTATTTGAATTGTGAAAGAATTGGAATGGAATTGTGGTTTCTTTGTTTCTATTGATGTGTGATTAATTGCTGAGGTTGCAGGGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAGGTTGGTATTGTTTTTTGTAGCTTCTTCACTCATTTCAGCTGCAATTTTTTTATAAGCTTTATCTTAGGTACAACAGAAAATGTTGATGAAAAATCATTGCTTATGTAATTAGCTAACACATTTATTAGAGAAAATGATGACATACCGGTGACATTTCGTTGGGTTAATTAGCCACCTCATAGAAGATTCTTCTCTATGATTCACTTGAAAACATGTCCAAATGATACTTGAGATCTTAGCAGTAACTCGCCCATAAACAATTTAGTGGTTCAACAATGGAAGAGATATCAAGTAATCCTTTTGGACTGTTGTTTTCTTTTAAGAGAGGGCATCAATTTATTATTTTGTCTCAATACTGATTCTTGAAAGTTTTTTCTTGGATTTTTTTGACAAACTATATGGTCTTGTTTCCCAAGTGGTTTTCTTTGGTGTCTCCTCTGCATTATAGGCTCTAAATATGCTGTTTGCATGTATCTTTTGAGTCTGCTTTATAGTTTTCTGCAGAAGATGTCCCCTATCTTCTCTAGTCAGTGTCTGGAATAGTTTACCAATCTGCTAATTCTGGGATGTGTTCCTTTATTGTCTCACTCAGGTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAGGTAAGATAGCTCCAAGCTGATATTTCTTCCTTATATTATGCTCACGGAAGGTACCTTGGTCATAGAGTAAATTTCTTTGCAAAGCATGGCTTTGCACTATGTTTTCTTGTCTCATCTATGCGTATAGTTGCTGGATAAATTTCTTGCATTACATGTCATGGCATTTCATAAGGTGCAGGACATGGTTACTACAATGGAAAAATGCTTCTTTCCCTTTCCTTTCTTAATTTACTGCTGCTTGTTGCCATACACGTTTGATTCGTTAATTGAGGGATGAGAATTTCTCAATATCCTTGAAATGTTGAATTTACTGCCATGAGATTTACTTATTTGTAGAGGTTTGCACCTCTTTTGTGAAGTTTGATGCATCAGTAGTTTAGGTCTCACTTCTCAGTCTGATAGGTACTGGTTAGATGGTTTTTGTTGAAAAGTTTGAGAATGTGCGGGGGCATCAGTTTCGCCTGGGATAGATGGTAGAAAATGTTGACTTGTCCATGTGGAACTTTTCTTTTCTCTTCCCAACCTCTTCAAATGCTCTGAAGTAACCATAACAAGATAAAGAATAAATCCCTTTGATCTTTTCGACATTATCGTTTGGTTGCGAAGATGATATGTTGTTTGTTTACTATGTGCAAGTAAATAAAACATTACAAGATGTTGTTCACGAACTACTTCCAATCACTTAGTTCAAATTTAGCCATTACTTACACTTCGTGTCCCTTTCAGGAAACGCTGTAAACCTCTAACTCAAATTTTGGCAATTACTATAGTAGATTTTTAGTTAAATGACCCCCTGAATTGAACATGGGTTTGTCCTTTAGATTATTCAACAATAAACCTTCATTTGAAATAACAAGACAAAATAAGAATCTCTAAGCTTAGTCAACTTTCAACCTTTCATGTTAGTCCATATAATTTTCATTCTTATAAAAGTAAATTTTAATAGTAAAATTTACCTATTTCATCCTTATAGGATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAGGTTTGAGCCTTTATAAGAAAAATGTTGAACTAGTAGACACTCAAGTTAGTGGTAGTTCGCGAAATGGACATCCATCATAATCGGAATAGTTGAATAAGGATTAGTTGTAACCTAGAGCAAATGCTCGTATTTTATTTACATTCCATTGCGTTGCATTTGATTGAAAATTGTTCCTGTTCAATTGATATGTCCTATGTATGAAATTACTAGGAGCATGGTGTTCCAACTAAAGCCATTTTCGACCCTCTATATAGTATATTCAGCATTCTTAGTAGTTATTTGCTTCTTTTGGCCTTCTCTGAGGACCATATGAGTATGGTGTGAACTCTTCAGAAAATAGATCTCTAAAATCAGTCACAGGTTTAAGTGTTTTGCCTAGAGTACCACGTCATCCTTTGCTTTCTAACCATTAAAGTTTCTAATAAGTTAGTACTTATATTACTCAGAGCGACTTATAGATTCTTGCCCCATTATTTACGTGATACATCTCAATTCTTGGCACATCTGCTATTGTATTTTATGGGGAAGATTCTCTTTGGTAAGTAAGACAGTAGCGTTTTGCTCTGTGGGTCTCCTTTTAAACTTCAGGCTTAGAGTTCTTAGCTGCCCCTTGCTGAAGACATTCATCCCTTGCCTTATGCTTTTCGGGGTTGTTTGGTTTAGAGACAAAATTTTCAGGGGTTAGTAATGTAAGGATTAAGTAACAAAGAGATTAATAATCCAAGAATTTTTTCTTCTTGTATGTTTAGTTTGATATTTTTCCAAATAGTGTAAAATGTATATCATGAAATATGTTTTTACTTCTTAAAACCAAAAAAAAAAAATAGCTTATTTGTTATTATGATGTCGTTTTAATGTTTTTAGTCCATGGATTACTAATCCCCACATTCTTATTCCACATCATATCTGGTATAAAATAATTCATAGATTCCCGCATAACTTGTGTCTTATGCAAATATTATTTATGAGAAAAACATAAGTAGCAAAAAAGTTTATGCCAAAAACATAAGTAGCAACCAAGCATTGTCTAAATTAATGCTGGATTTTATGCAAAGGTTAAATTTCTTGACAGTAATTAGGGATTCAATCAGTTTCAAAAAAATTAGGGATTCAATCAGGATCTTATTCTGTAATTATACACTTACCAAAATCATTTACGTTGTAATTGCTATAAATTCCCATTTCAAACTATCCCTTGCTGTGTTAGCTTTATGTATGCACTATGCAGTAATTGCTAGTTTGCTGGTTCTATTTTGCCTTTCTTACCTTTAAATTTGGAGACTCTTTTAGGATGATTGGGCATGTGGCTGTCTGCATGTCTTGATCCTTGTCATTCTGACTCTTCCTTGCTTTTATGTGTCAGTACTGTTTTACATATCATATTGAGAAATCTGAGAGTTTGCGTGACATTTTTTTTGTACCCCATGATTTGTGTCTCTAACATAGTAAGACCACCTCTTGGTGTCAAGACTGTGCTGGGGAACTTGCATTCAGTGGTTTAATCTTTATTAATACTCTCTACTTCATCTAATCCAGTTAATGAGAAATCTGCTCGCTTTGTTTCACCTGAATTTACATGCCAGTTTGGTTCTTTAAATTGTAGAGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAGGTATGTTTCGTTTGAATGGTGTAATCTTCTCTTTATTTTTGAAACACTCTTAATCTTTCAACATTTGCTCTATTTTGACAGGTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAGGTAATGATATCCTGATGACGGATGCCTTTTTATAGCTTGTAGCTGTTATTTTTATCATTTGCTTGTCCTTTTTTTTCTCCTCCAGTTTCATTTCACCCCTCTAGAACAAGATTTTACGTCAGCATATGGTATTGACTAAGGCATGCATTTATAGAAGGCGTAGAACTATCTGGTGCTTGCTAGTGATGCTCCTACATGCAAGAATAACTAAAACAAAAAATTCTTGTTTCTTTAAAAAATTGCTGCTTGGTTCACTGATCTATTTGGAGAAACATAAAGGTTGATTCCTTTTGTCAGAAAAAAAGAGGGATGTTAGTGGCTTTTAGACGTCTTTAACCTGTAAGCAATTTGAAGGCGCTGGAACCTTTTTAAAGATCGTGGGCATGTTCCCTTTGTCGTATTTCTCCTTTTCGCCCCTCCCTAATTAAAGAATATGGTTCCTTTTGAGCTGAAATATTACTGCTATGCCATTTAGTTCGTAAGGCCTATCATACATATCTGAACCGCAGGCCCTTCCTCTTGTACTTCTCTTCCCACTTGTGAAACATCTCAGTCCCCTTCTTCACTGGAATCTGAGTTTGGATTTGTCTGATGATGCACTCGCCCACCATAAGCCTTTTCTCCCTACTTTAGGAAGCATTTTCACCTTCCCTTTAACCAGACTAGGACCTTCATATTTGGAATGCACTTTTTTTCCATTCAAGAGGAATGGTATAAAATAAAAGCTCTTGAACTTTATTGCGTTAGGAGCTGTGAAGGTCTGAAGGAGTCTGTATTTAGACTCTAAGTATCATGAACCTCCTATCCAGCTTCAATCTTGTGTCTTCTTCAACTTCGATTAACACTGGCCTGTTTCCAGAAATCCTCAGAAGCTCTGGCTCAGAACTGAACTGGCAAGGCAACCAGTCTAATCCAGACTGTATCCAACACCAACCCTGAGTGTCTGCCCGACCAGTGAGTTACTCCATACTTTTGAAACACCATCTTTGCTTGGTCTGATGGCCCGCGCCTCCTTCTGAGAGGAATTTAAGAAACCCCTCTACCTTTGAACGGTTGACAACCATGTGGATTAACCCACTTCTAGACCAATTTGATCTTCGGTTGTTTTAGGCTCTTCCCCAATCAATGTACCAAAAACCTCTATATAAAGTGTTAGCTTTTTCTCACGATACGCCCTCAACCTCCATCTCTTGCTATCCCTTGCTTTCTTTATCGGAGTTGCCAGCGGTTGTTAATATGACCAATTTGAGCAGAGTTTTGGATAACCCCTTTTACATGTACCCAAGTTTTATGAATGGAATTTTGACTTGCTTCTGTCATTGTCAAGCTAACTGGAGAACTCTTGACCAGAAAAATACGAAAGGGTAAGATTTAGTAAAGTAATTGTTTTTTCTGGTTTAATTAAGGAGCAAATCCTAAAGAACACTTGTTTGACTTTAGATATGTGCTGCAAGATATATCATTTAGTCCTTTATTCTCTCTTTCCTGCTGTTTATATATAGTGATAATACAATTTGCTGGTTCTATTTCTGTGCTTGGCGGAATGACTTGCTTCTTTTTGCCAGCTATAAGTCTCTACTGGCTGAACTGTTGTTCATCTTCTAATGTTGCTACAGTTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGGTAGATCGCCTGCTCTTTTCATCTTCAATGTTGCAAGTGTGTTCTTTTATATTATTACTCCTACCTAGTATTCTTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTTTTCCAGTACCCTATTTTTTACCTTAGTTATCTGTTTGTGTTAGTATTTATTTGCCTTTACTCATTCTAGTTCTATCTCTTTTATTAATTCATGCATCAATTATACCTAACAAGTAAGTGAATGTCCTAGTATTGGTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTCCAGTCCCCTATTTTTTACCTTAGTGATCTGTTTGAGTTAGTATTCATTTGCCTTTACTCATTTTCTGTTACTATCTCTTTATTTTTAAATTTGTAATTCAATTATACCTAACAAGTTAGTGAATGTCCGTTTTGGATCCCTTTTAGATGTAAGCTGTTTGATCATTGCTCATTTTCCTTTACTCATTTTCTTTTTCTCTCTCTTCTTTGTTTGTACATCAATTAGACCTAACAAGAAAATGAATGTCCCTTTTTGGTCACTTTTCGATGTAAGCTGTTTGAGTCATTTTTCTTTTTCCATTTCCTATTTCTATTCTTTTTTATTTGTACATCAATTAGACCTAACAGTGAATGTTCCTTTTGGGTCCCATTTAGATCTAAGTGGTGTGTTAATGCTTTTATTTGAGATTCTGATATTGCAATATATCAATCTCTAATCAAAGCTAAGATTTTGATTCCTTCTATACTAGCACGACCTAAAAAGTAGCGTGTTTTATTTTTCTTCCAATTATTCAGTCGGTGTGTAGATGTTGTTCAGATGGGTCAATTGTATCTTGCTAACAACTTTAGTTTTTCAGCTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGGGTAAGTTCTGATGCAAGTAGAGAATTGTACATGTATGATGTCCTTTCAATATGCTATATCTATACTAATTATTCTGCTTTAAGCTTCTTAATGCTCCATTAATCGTCTGATAAACTCTTCAAACAAAGCTCGGAAAAACTATTCATGCAAGTTTGTGTATCAGAACTACCATTCTCATTTGCTCGGTAGTTATCATCATTACACATTATTTCTGCAAGCCACTTTCTTGATACATGCTAATAAATACTTTTGAGTCCAGACACGACTATTATTTTGAAATAAAGGCAACTATTCTGGTCTTTATCGATGCTTTTGTTGGCCAAACAAATTGAAACTTTCTGCATTTCTGCTTGATCTCAGTTAGTATTAATGTATTGACTTACTTCTTTGATAAGTCATCATCAGTTTTCTGACTTATTAAATATATGTTGCTTATTTCTTTTTTACCTTGGTCGTACATAATAAACATCACCAAGTTGTTTAGGACCTTAGGTTTCATTTGATCTCTTTCAGGGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAGGTACTAATCTTTTTCTTTCTCCCTTATTCTGTTGTTTGACCATGTAGAGAATTGACATTTCACTGTCTATTTTTATTCACTTAATGGATTTTAGCACAAATATTTGATGTTGACATGTGTGGGTGCTTGCAGATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAGGTAATTTGTCTCTATGTATTCCCCTCTCAAGAGTTTATTTGAGCTCATCCTACTTTAGTTCAATTAAAATCTCAATTTGCAAGTCAAAAGAACACCTTTGCCTCAAAAGTCCCTCTAGGTTGAAATGTAGCTCTTCATCAAAATCACTGCAGAGTTTTCGGTGTGTATAGATCTTGTATATCTGTGATTTGTCGGCACTGTTGTTAAAGGCGTGCTGAAGCGAGGCTCAATACTTGTTGAGCGATTCGCCTCGCCTCGCCTCAATGTCGTCATCAAGGTTCTACGACATGCTTTTCCTTGCGAATGAGCCTCTTCCGAAGAGGCGAGACAGTTGGCATTTCACTTTATCGTAATCTTTTTGTTCATATATTTGTCATTCATGCTATAACTATTAGTCTTGGACTATATATATATATATATATATTGTTTCTCCCTTTGTGCTTTTTCTTCATTAAAGTTTATGCTTTATTTGAGCTTGAAGTCCCAACGGATCTTAGAGGTTTTTTGCTTTTAATGACACTGTTTATCGGTCAAGTTTAGTATTGACACAACTTGTAGTCCGTTGCTTCATTTAGTATTTTAAAATGATGGGAAATAATGACTTTCTGCTTCAAGGTAGATTTGGAATTTGTTAGATGTTGACTTTGTCAGTAACTTCGATAGATGGTGTTGTGGACATATTTGCACAGATGGCGTGGTGTCCAGTTTCATTGCAAGTCTTGTTTCTTAGCATCTAATATATTTTCAAGTACATAAACTGATTGCAATATGTACAGATATAGTCATAATATTTGCTACTTTTTTGTGACAATTTACGTGGACAAGTCAGTTTTATAGTAACTGGAACTGTGTTATCTATACATTTGTATTCCTGTAGTAGAGAAGGATCTTGTAATAATTTCTTTGTATGACTAATACACTGTTATATCCTATATGAAGTTTCTTTGATGTGAATGGAAATGTTTTATTCAATATCCTCAAATGCACTTCGCTGGTTGCAGATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTT--ACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGA</genome_strand>
        <mrna_strand>CTTTAGCAAAGTCTCAGTCTTCTTTGACAAACCCCCAAAGCGCCATAAAAAGAGTGTTCATGAAAATTCCAGTATTGTGATTCCGCACGCAACACCTACCCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAACTGAGAACTCAAACACCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG....................................................................................GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCAATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCCTTTGCTCACACCAAATTGGAGGAATATGGCAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG.....................................................................................GGTTATTATAGGCGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGACGCACTCAAGGATTTTCAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAGTTATGTCCAAACGACCCAGATGCTGCCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTGAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGACGTTCAGTAGCTGACTCTATTGATTATCATTCCGTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTAGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTCGTAACATTAGATTTTGTGAAGAAGATGTTGGATGACTTCAAAAACCAGAAGAATTTACACAAGAG.................................................................................GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCATTGCCCTCCCTTGTTGACATTGTTGTTCCCGCAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTCGCCTTCAAGTGCATGTGTCCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACCTTGCGAGAGGAAATCATGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCGGAGGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAG....................................................................................................................................ATTTAGTGGTCCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAACATGATGGCAAACTCATAACAGTGTTTTCCGCTCCAAATTACTGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTAACAAGGGTGCTTTTATACGGTTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCCGATGTCAAGCCAATGGCATATGCCAACAACTTCCTTCGGATGTTTTCTT-AAAACTCTGAAACCTAACGTTCAGTATTACAATCGATTAGACCTTTTGTCACACTGACCAAGAGCATACACATCAGGAGGCAGAAGAGCTAGTACTTACACAGCCAATTAGCTGCAGTGTCATTATTTGGACAACTTCCTGACTTGCCCGCAGCTTCTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGTGTAAACAC-TTGTCTACAATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTGTTTATGTTCCTATTTGTAAGATTGTCACACTTCTCATTTCTCTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-G74Xcc/sgn_marker_seqs" ref_id="SGN-M4003" ref_strand="+" ref_description="SGN-M4003 C2_At2g42810 [cosii_markers]">
      <seq>cgccataaaaagagtattcatgaaaattccagtattgtgacttcgcacgcaacatctactcagccagcctccagtcgccattgttatgcccggtatggaagctgagaactcaaacgcctcccgagctgaagaactcaagcaactcgcaaatgaagcattcaaagggcataagtattcgcaagctattgatctgtacacacaagcgattgagttgaacggtgagaatgcggtgtactatgctaaccgtgcgtttgctcactccaaattggaggaatatggaagcgcaatacaggatggaactagagctattgaaattgaccctagatattcaaagggttattataggagaggagctgcatatttggcaatggggaagttcaaagatgcactcaaggattttcaacaggtcaagaaattatgtccaaacgacccagatgctaccaaaaaattgaaggaatgtgagaaagctgtcatgaagctaaaatttgaagaagctatttctgtcccagaatctcagaggcgttcagtagctgactctattgattatcgttctgtagaggtggagcctcaatatgctggtgcaagaatagagggagatgttgtaacattagattttgtgaagaagatgctggatgacttcaaaaaccagaagaacttgcataagaggtatgcctaccaaatagtactgcaaacaagagaaatgttgcgagcactgccctcccttgttgacattgttgttcccgaagggaagcacttcactgtatgtggtgatgtacatggtcagttttatgacctcctaaatattttcgagctcaatgggcttccatcagaagacaatccgtatctgttcaatggtgattttgttgatagagggtctttctctctagaggtcatattgacattatttgccttcaagtgcatgtgtccatcagctatacacctggcgagaggaaatcacgaaagcaagagcatgaacaaaatatatgggtttgagggcgaggtcagatccaagttaagtgaaatatttgtggaactctttgcagaagtgttctgttgcttacctttggcccatgtcataaatgagaaagtctttgtagtacatggaggtctttttagtgttgatggcgtgaagctctctgatattagagcaattgatcggttttgtgagcccccagaagaggggttaatgtgtgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0023C09-wx1xK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0023C09.1" temp_strand="-" temp_description="C07HBa0023C09.1  AC210349.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0023C09 upload_account_name:france">
        <position start="19140" stop="11251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18840" g_stop="18677" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18676" i_stop="18593" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18592" g_stop="18423" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="334" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18422" i_stop="18338" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18337" g_stop="18266" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="406" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18265" i_stop="17674" i_length="592">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17673" g_stop="17523" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="557" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17522" i_stop="14734" i_length="2789">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14733" g_stop="14625" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="666" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14624" i_stop="14544" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14543" g_stop="14426" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="784" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14425" i_stop="12810" i_length="1616">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12809" g_stop="12662" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="932" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="12661" i_stop="11806" i_length="856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="11805" g_stop="11557" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="933" r_stop="1181" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0023C09.1" gen_strand="-" ref_id="SGN-M4003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1181</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0023C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18840" e_stop="18677"/>
          <exon e_start="18592" e_stop="18423"/>
          <exon e_start="18337" e_stop="18266"/>
          <exon e_start="17673" e_stop="17523"/>
          <exon e_start="14733" e_stop="14625"/>
          <exon e_start="14543" e_stop="14426"/>
          <exon e_start="12809" e_stop="12662"/>
          <exon e_start="11805" e_stop="11557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAGGTAAATTCAATATACACAAACTTGAGGTTGTATCATGTGGATTTATGAATAATAAGTCTGTTTATGATTTCAATGTGTTTTCAGGGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAGGTAAGTATTTGAATTGTGAAAGAATTGGAATGGAATTGTGGTTTCTTTGTTTCTATTGATGTGTGATTAATTGCTGAGGTTGCAGGGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAGGTTGGTATTGTTTTTTGTAGCTTCTTCACTCATTTCAGCTGCAATTTTTTTATAAGCTTTATCTTAGGTACAACAGAAAATGTTGATGAAAAATCATTGCTTATGTAATTAGCTAACACATTTATTAGAGAAAATGATGACATACCGGTGACATTTCGTTGGGTTAATTAGCCACCTCATAGAAGATTCTTCTCTATGATTCACTTGAAAACATGTCCAAATGATACTTGAGATCTTAGCAGTAACTCGCCCATAAACAATTTAGTGGTTCAACAATGGAAGAGATATCAAGTAATCCTTTTGGACTGTTGTTTTCTTTTAAGAGAGGGCATCAATTTATTATTTTGTCTCAATACTGATTCTTGAAAGTTTTTTCTTGGATTTTTTTGACAAACTATATGGTCTTGTTTCCCAAGTGGTTTTCTTTGGTGTCTCCTCTGCATTATAGGCTCTAAATATGCTGTTTGCATGTATCTTTTGAGTCTGCTTTATAGTTTTCTGCAGAAGATGTCCCCTATCTTCTCTAGTCAGTGTCTGGAATAGTTTACCAATCTGCTAATTCTGGGATGTGTTCCTTTATTGTCTCACTCAGGTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAGGTAAGATAGCTCCAAGCTGATATTTCTTCCTTATATTATGCTCACGGAAGGTACCTTGGTCATAGAGTAAATTTCTTTGCAAAGCATGGCTTTGCACTATGTTTTCTTGTCTCATCTATGCGTATAGTTGCTGGATAAATTTCTTGCATTACATGTCATGGCATTTCATAAGGTGCAGGACATGGTTACTACAATGGAAAAATGCTTCTTTCCCTTTCCTTTCTTAATTTACTGCTGCTTGTTGCCATACACGTTTGATTCGTTAATTGAGGGATGAGAATTTCTCAATATCCTTGAAATGTTGAATTTACTGCCATGAGATTTACTTATTTGTAGAGGTTTGCACCTCTTTTGTGAAGTTTGATGCATCAGTAGTTTAGGTCTCACTTCTCAGTCTGATAGGTACTGGTTAGATGGTTTTTGTTGAAAAGTTTGAGAATGTGCGGGGGCATCAGTTTCGCCTGGGATAGATGGTAGAAAATGTTGACTTGTCCATGTGGAACTTTTCTTTTCTCTTCCCAACCTCTTCAAATGCTCTGAAGTAACCATAACAAGATAAAGAATAAATCCCTTTGATCTTTTCGACATTATCGTTTGGTTGCGAAGATGATATGTTGTTTGTTTACTATGTGCAAGTAAATAAAACATTACAAGATGTTGTTCACGAACTACTTCCAATCACTTAGTTCAAATTTAGCCATTACTTACACTTCGTGTCCCTTTCAGGAAACGCTGTAAACCTCTAACTCAAATTTTGGCAATTACTATAGTAGATTTTTAGTTAAATGACCCCCTGAATTGAACATGGGTTTGTCCTTTAGATTATTCAACAATAAACCTTCATTTGAAATAACAAGACAAAATAAGAATCTCTAAGCTTAGTCAACTTTCAACCTTTCATGTTAGTCCATATAATTTTCATTCTTATAAAAGTAAATTTTAATAGTAAAATTTACCTATTTCATCCTTATAGGATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAGGTTTGAGCCTTTATAAGAAAAATGTTGAACTAGTAGACACTCAAGTTAGTGGTAGTTCGCGAAATGGACATCCATCATAATCGGAATAGTTGAATAAGGATTAGTTGTAACCTAGAGCAAATGCTCGTATTTTATTTACATTCCATTGCGTTGCATTTGATTGAAAATTGTTCCTGTTCAATTGATATGTCCTATGTATGAAATTACTAGGAGCATGGTGTTCCAACTAAAGCCATTTTCGACCCTCTATATAGTATATTCAGCATTCTTAGTAGTTATTTGCTTCTTTTGGCCTTCTCTGAGGACCATATGAGTATGGTGTGAACTCTTCAGAAAATAGATCTCTAAAATCAGTCACAGGTTTAAGTGTTTTGCCTAGAGTACCACGTCATCCTTTGCTTTCTAACCATTAAAGTTTCTAATAAGTTAGTACTTATATTACTCAGAGCGACTTATAGATTCTTGCCCCATTATTTACGTGATACATCTCAATTCTTGGCACATCTGCTATTGTATTTTATGGGGAAGATTCTCTTTGGTAAGTAAGACAGTAGCGTTTTGCTCTGTGGGTCTCCTTTTAAACTTCAGGCTTAGAGTTCTTAGCTGCCCCTTGCTGAAGACATTCATCCCTTGCCTTATGCTTTTCGGGGTTGTTTGGTTTAGAGACAAAATTTTCAGGGGTTAGTAATGTAAGGATTAAGTAACAAAGAGATTAATAATCCAAGAATTTTTTCTTCTTGTATGTTTAGTTTGATATTTTTCCAAATAGTGTAAAATGTATATCATGAAATATGTTTTTACTTCTTAAAACCAAAAAAAAAAAATAGCTTATTTGTTATTATGATGTCGTTTTAATGTTTTTAGTCCATGGATTACTAATCCCCACATTCTTATTCCACATCATATCTGGTATAAAATAATTCATAGATTCCCGCATAACTTGTGTCTTATGCAAATATTATTTATGAGAAAAACATAAGTAGCAAAAAAGTTTATGCCAAAAACATAAGTAGCAACCAAGCATTGTCTAAATTAATGCTGGATTTTATGCAAAGGTTAAATTTCTTGACAGTAATTAGGGATTCAATCAGTTTCAAAAAAATTAGGGATTCAATCAGGATCTTATTCTGTAATTATACACTTACCAAAATCATTTACGTTGTAATTGCTATAAATTCCCATTTCAAACTATCCCTTGCTGTGTTAGCTTTATGTATGCACTATGCAGTAATTGCTAGTTTGCTGGTTCTATTTTGCCTTTCTTACCTTTAAATTTGGAGACTCTTTTAGGATGATTGGGCATGTGGCTGTCTGCATGTCTTGATCCTTGTCATTCTGACTCTTCCTTGCTTTTATGTGTCAGTACTGTTTTACATATCATATTGAGAAATCTGAGAGTTTGCGTGACATTTTTTTTGTACCCCATGATTTGTGTCTCTAACATAGTAAGACCACCTCTTGGTGTCAAGACTGTGCTGGGGAACTTGCATTCAGTGGTTTAATCTTTATTAATACTCTCTACTTCATCTAATCCAGTTAATGAGAAATCTGCTCGCTTTGTTTCACCTGAATTTACATGCCAGTTTGGTTCTTTAAATTGTAGAGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAGGTATGTTTCGTTTGAATGGTGTAATCTTCTCTTTATTTTTGAAACACTCTTAATCTTTCAACATTTGCTCTATTTTGACAGGTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAGGTAATGATATCCTGATGACGGATGCCTTTTTATAGCTTGTAGCTGTTATTTTTATCATTTGCTTGTCCTTTTTTTTCTCCTCCAGTTTCATTTCACCCCTCTAGAACAAGATTTTACGTCAGCATATGGTATTGACTAAGGCATGCATTTATAGAAGGCGTAGAACTATCTGGTGCTTGCTAGTGATGCTCCTACATGCAAGAATAACTAAAACAAAAAATTCTTGTTTCTTTAAAAAATTGCTGCTTGGTTCACTGATCTATTTGGAGAAACATAAAGGTTGATTCCTTTTGTCAGAAAAAAAGAGGGATGTTAGTGGCTTTTAGACGTCTTTAACCTGTAAGCAATTTGAAGGCGCTGGAACCTTTTTAAAGATCGTGGGCATGTTCCCTTTGTCGTATTTCTCCTTTTCGCCCCTCCCTAATTAAAGAATATGGTTCCTTTTGAGCTGAAATATTACTGCTATGCCATTTAGTTCGTAAGGCCTATCATACATATCTGAACCGCAGGCCCTTCCTCTTGTACTTCTCTTCCCACTTGTGAAACATCTCAGTCCCCTTCTTCACTGGAATCTGAGTTTGGATTTGTCTGATGATGCACTCGCCCACCATAAGCCTTTTCTCCCTACTTTAGGAAGCATTTTCACCTTCCCTTTAACCAGACTAGGACCTTCATATTTGGAATGCACTTTTTTTCCATTCAAGAGGAATGGTATAAAATAAAAGCTCTTGAACTTTATTGCGTTAGGAGCTGTGAAGGTCTGAAGGAGTCTGTATTTAGACTCTAAGTATCATGAACCTCCTATCCAGCTTCAATCTTGTGTCTTCTTCAACTTCGATTAACACTGGCCTGTTTCCAGAAATCCTCAGAAGCTCTGGCTCAGAACTGAACTGGCAAGGCAACCAGTCTAATCCAGACTGTATCCAACACCAACCCTGAGTGTCTGCCCGACCAGTGAGTTACTCCATACTTTTGAAACACCATCTTTGCTTGGTCTGATGGCCCGCGCCTCCTTCTGAGAGGAATTTAAGAAACCCCTCTACCTTTGAACGGTTGACAACCATGTGGATTAACCCACTTCTAGACCAATTTGATCTTCGGTTGTTTTAGGCTCTTCCCCAATCAATGTACCAAAAACCTCTATATAAAGTGTTAGCTTTTTCTCACGATACGCCCTCAACCTCCATCTCTTGCTATCCCTTGCTTTCTTTATCGGAGTTGCCAGCGGTTGTTAATATGACCAATTTGAGCAGAGTTTTGGATAACCCCTTTTACATGTACCCAAGTTTTATGAATGGAATTTTGACTTGCTTCTGTCATTGTCAAGCTAACTGGAGAACTCTTGACCAGAAAAATACGAAAGGGTAAGATTTAGTAAAGTAATTGTTTTTTCTGGTTTAATTAAGGAGCAAATCCTAAAGAACACTTGTTTGACTTTAGATATGTGCTGCAAGATATATCATTTAGTCCTTTATTCTCTCTTTCCTGCTGTTTATATATAGTGATAATACAATTTGCTGGTTCTATTTCTGTGCTTGGCGGAATGACTTGCTTCTTTTTGCCAGCTATAAGTCTCTACTGGCTGAACTGTTGTTCATCTTCTAATGTTGCTACAGTTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGGTAGATCGCCTGCTCTTTTCATCTTCAATGTTGCAAGTGTGTTCTTTTATATTATTACTCCTACCTAGTATTCTTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTTTTCCAGTACCCTATTTTTTACCTTAGTTATCTGTTTGTGTTAGTATTTATTTGCCTTTACTCATTCTAGTTCTATCTCTTTTATTAATTCATGCATCAATTATACCTAACAAGTAAGTGAATGTCCTAGTATTGGTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTCCAGTCCCCTATTTTTTACCTTAGTGATCTGTTTGAGTTAGTATTCATTTGCCTTTACTCATTTTCTGTTACTATCTCTTTATTTTTAAATTTGTAATTCAATTATACCTAACAAGTTAGTGAATGTCCGTTTTGGATCCCTTTTAGATGTAAGCTGTTTGATCATTGCTCATTTTCCTTTACTCATTTTCTTTTTCTCTCTCTTCTTTGTTTGTACATCAATTAGACCTAACAAGAAAATGAATGTCCCTTTTTGGTCACTTTTCGATGTAAGCTGTTTGAGTCATTTTTCTTTTTCCATTTCCTATTTCTATTCTTTTTTATTTGTACATCAATTAGACCTAACAGTGAATGTTCCTTTTGGGTCCCATTTAGATCTAAGTGGTGTGTTAATGCTTTTATTTGAGATTCTGATATTGCAATATATCAATCTCTAATCAAAGCTAAGATTTTGATTCCTTCTATACTAGCACGACCTAAAAAGTAGCGTGTTTTATTTTTCTTCCAATTATTCAGTCGGTGTGTAGATGTTGTTCAGATGGGTCAATTGTATCTTGCTAACAACTTTAGTTTTTCAGCTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG</genome_strand>
        <mrna_strand>CGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG....................................................................................GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG.....................................................................................GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAG.................................................................................GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-G74Xcc/sgn_marker_seqs" ref_id="SGN-M1715" ref_strand="+" ref_description="SGN-M1715 T1030 [cos_markers]">
      <seq>tgacttcaaaaaccagaagaacttgcataagaggtatgcctaccaaatagtactgcaaacaagagaaatgttgcgagcactgccctcccttgttgacattgttgttcccgaagggaagcacttcactgtatgtggtgatgtacatggtcagttttatgacctcctaaatattttcgagctcaatgggcttccatcagaagacaatccgtatctgttcaatggtgattttgttgatagagggtctttctctctagaggtcatattgacattatttgccttcaagtgcatgtgtccatcagctatacacctggcgagaggaaatcacgaaagcaagagcatgaacaaaatatatgggtttgagggcgaggtcagatccaagttaagtgaaatatttgtggaactctttgcagaagtgttctgttgcttacctttggcccatgtcataaatgagaaagtctttgtagtacatggaggtctttttagtgttgatggcgtgaagctctctgatattagagcaattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0023C09-wx1xK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0023C09.1" temp_strand="-" temp_description="C07HBa0023C09.1  AC210349.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0023C09 upload_account_name:france">
        <position start="14957" stop="11281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14657" g_stop="14625" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14624" i_stop="14544" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14543" g_stop="14426" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="151" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14425" i_stop="12810" i_length="1616">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12809" g_stop="12662" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="299" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12661" i_stop="11806" i_length="856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11805" g_stop="11581" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="524" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0023C09.1" gen_strand="-" ref_id="SGN-M1715" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0023C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14657" e_stop="14625"/>
          <exon e_start="14543" e_stop="14426"/>
          <exon e_start="12809" e_stop="12662"/>
          <exon e_start="11805" e_stop="11581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTCAAAAACCAGAAGAACTTGCATAAGAGGTATGTTTCGTTTGAATGGTGTAATCTTCTCTTTATTTTTGAAACACTCTTAATCTTTCAACATTTGCTCTATTTTGACAGGTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAGGTAATGATATCCTGATGACGGATGCCTTTTTATAGCTTGTAGCTGTTATTTTTATCATTTGCTTGTCCTTTTTTTTCTCCTCCAGTTTCATTTCACCCCTCTAGAACAAGATTTTACGTCAGCATATGGTATTGACTAAGGCATGCATTTATAGAAGGCGTAGAACTATCTGGTGCTTGCTAGTGATGCTCCTACATGCAAGAATAACTAAAACAAAAAATTCTTGTTTCTTTAAAAAATTGCTGCTTGGTTCACTGATCTATTTGGAGAAACATAAAGGTTGATTCCTTTTGTCAGAAAAAAAGAGGGATGTTAGTGGCTTTTAGACGTCTTTAACCTGTAAGCAATTTGAAGGCGCTGGAACCTTTTTAAAGATCGTGGGCATGTTCCCTTTGTCGTATTTCTCCTTTTCGCCCCTCCCTAATTAAAGAATATGGTTCCTTTTGAGCTGAAATATTACTGCTATGCCATTTAGTTCGTAAGGCCTATCATACATATCTGAACCGCAGGCCCTTCCTCTTGTACTTCTCTTCCCACTTGTGAAACATCTCAGTCCCCTTCTTCACTGGAATCTGAGTTTGGATTTGTCTGATGATGCACTCGCCCACCATAAGCCTTTTCTCCCTACTTTAGGAAGCATTTTCACCTTCCCTTTAACCAGACTAGGACCTTCATATTTGGAATGCACTTTTTTTCCATTCAAGAGGAATGGTATAAAATAAAAGCTCTTGAACTTTATTGCGTTAGGAGCTGTGAAGGTCTGAAGGAGTCTGTATTTAGACTCTAAGTATCATGAACCTCCTATCCAGCTTCAATCTTGTGTCTTCTTCAACTTCGATTAACACTGGCCTGTTTCCAGAAATCCTCAGAAGCTCTGGCTCAGAACTGAACTGGCAAGGCAACCAGTCTAATCCAGACTGTATCCAACACCAACCCTGAGTGTCTGCCCGACCAGTGAGTTACTCCATACTTTTGAAACACCATCTTTGCTTGGTCTGATGGCCCGCGCCTCCTTCTGAGAGGAATTTAAGAAACCCCTCTACCTTTGAACGGTTGACAACCATGTGGATTAACCCACTTCTAGACCAATTTGATCTTCGGTTGTTTTAGGCTCTTCCCCAATCAATGTACCAAAAACCTCTATATAAAGTGTTAGCTTTTTCTCACGATACGCCCTCAACCTCCATCTCTTGCTATCCCTTGCTTTCTTTATCGGAGTTGCCAGCGGTTGTTAATATGACCAATTTGAGCAGAGTTTTGGATAACCCCTTTTACATGTACCCAAGTTTTATGAATGGAATTTTGACTTGCTTCTGTCATTGTCAAGCTAACTGGAGAACTCTTGACCAGAAAAATACGAAAGGGTAAGATTTAGTAAAGTAATTGTTTTTTCTGGTTTAATTAAGGAGCAAATCCTAAAGAACACTTGTTTGACTTTAGATATGTGCTGCAAGATATATCATTTAGTCCTTTATTCTCTCTTTCCTGCTGTTTATATATAGTGATAATACAATTTGCTGGTTCTATTTCTGTGCTTGGCGGAATGACTTGCTTCTTTTTGCCAGCTATAAGTCTCTACTGGCTGAACTGTTGTTCATCTTCTAATGTTGCTACAGTTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGGTAGATCGCCTGCTCTTTTCATCTTCAATGTTGCAAGTGTGTTCTTTTATATTATTACTCCTACCTAGTATTCTTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTTTTCCAGTACCCTATTTTTTACCTTAGTTATCTGTTTGTGTTAGTATTTATTTGCCTTTACTCATTCTAGTTCTATCTCTTTTATTAATTCATGCATCAATTATACCTAACAAGTAAGTGAATGTCCTAGTATTGGTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTCCAGTCCCCTATTTTTTACCTTAGTGATCTGTTTGAGTTAGTATTCATTTGCCTTTACTCATTTTCTGTTACTATCTCTTTATTTTTAAATTTGTAATTCAATTATACCTAACAAGTTAGTGAATGTCCGTTTTGGATCCCTTTTAGATGTAAGCTGTTTGATCATTGCTCATTTTCCTTTACTCATTTTCTTTTTCTCTCTCTTCTTTGTTTGTACATCAATTAGACCTAACAAGAAAATGAATGTCCCTTTTTGGTCACTTTTCGATGTAAGCTGTTTGAGTCATTTTTCTTTTTCCATTTCCTATTTCTATTCTTTTTTATTTGTACATCAATTAGACCTAACAGTGAATGTTCCTTTTGGGTCCCATTTAGATCTAAGTGGTGTGTTAATGCTTTTATTTGAGATTCTGATATTGCAATATATCAATCTCTAATCAAAGCTAAGATTTTGATTCCTTCTATACTAGCACGACCTAAAAAGTAGCGTGTTTTATTTTTCTTCCAATTATTCAGTCGGTGTGTAGATGTTGTTCAGATGGGTCAATTGTATCTTGCTAACAACTTTAGTTTTTCAGCTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATC</genome_strand>
        <mrna_strand>TGACTTCAAAAACCAGAAGAACTTGCATAAGAG.................................................................................GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7327" PGL_stop="1204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7327" e_stop="7074"/>
            <exon e_start="6678" e_stop="6589"/>
            <exon e_start="6087" e_stop="6009"/>
            <exon e_start="5786" e_stop="5709"/>
            <exon e_start="4319" e_stop="4271"/>
            <exon e_start="3116" e_stop="3067"/>
            <exon e_start="2342" e_stop="2193"/>
            <exon e_start="1727" e_stop="1647"/>
            <exon e_start="1541" e_stop="1204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.373" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.852" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7327" e_stop="7074" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7073" i_stop="6679" i_length="395"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6678" e_stop="6589" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.373" acc_prob="0.965">
            <gDNA_intron_boundary i_start="6588" i_stop="6088" i_length="501"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6087" e_stop="6009" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.984">
            <gDNA_intron_boundary i_start="6008" i_stop="5787" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5786" e_stop="5709" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="5708" i_stop="4320" i_length="1389"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4319" e_stop="4271" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.852" acc_prob="0.751">
            <gDNA_intron_boundary i_start="4270" i_stop="3117" i_length="1154"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3116" e_stop="3067" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3066" i_stop="2343" i_length="724"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2342" e_stop="2193" e_length="150"/>
          </exon>
          <intron i_serial="7" don_prob="0.936" acc_prob="0.920">
            <gDNA_intron_boundary i_start="2192" i_stop="1728" i_length="465"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="1727" e_stop="1647" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.922" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1646" i_stop="1542" i_length="105"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="1541" e_stop="1204" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7327" stop="7074"/>
              <exon start="6678" stop="6589"/>
              <exon start="6087" stop="6009"/>
              <exon start="5786" stop="5709"/>
              <exon start="4319" stop="4271"/>
              <exon start="3116" stop="3067"/>
              <exon start="2342" stop="2193"/>
              <exon start="1727" stop="1647"/>
              <exon start="1541" stop="1204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7360" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG : GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG : AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG : CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG : GATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTG : AAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAG : GTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGG : CTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCCAGAAGAACTAGTCCTCATTCTTCAGCGCGCTTCTATATCG : GTGCAAGAGATGGCTGGATTTGTGTACAACCCTTTGACGGGTCGCTGGTCCTTGTCCGATGACATCAGTGTTAATTTCATCGCTTTCGGAACAAAATCAGCCAAGAAGGATGAAACTCTAGATTAAGTTACGATATAGCTGTCAATTTTATTCTGCTGTTAATCTCTTAACCCATTCTGTATGTAATCTCTTTTTCAGTTTTGTTGGATGATGAATGCAATTTCTATATGTTAGAATATGAACATCCACATCACAAGTTCTTAACTTGAATGAAAATGTACCATTTCGAAATTTCAAATACATGTGTATTATCTTTGATTGATAAAATTTGTAACTTC</gDNA_template>
            <first_frame> V  L  N  R  L  R  S  L  C  R  V  S  Q  L  S  D  V  R  F  D  K  L  R  D  P  V  S  I  F  S  T  S  Q  N  Q  V  T  W  R  S  Y  S  E  A  S  Q  P  T  P  I  N  P  P  P  P  P  P  P  S  P  N  T  S  T  T  T  S  S  S  L  N  E  F  E  L  A  K  F  S  A  I  A  E  T  W :   W  D  A  E  G  P  F  K  P  L  H  L  M  N  P  T  R  L  A  F  I  R  S  T  L  C  R  H  F  R :   K  D  P  N  C  T  R  P  F  E  G  L  K  F  V  D  V  G  C  G  G  G  I  L  S  E  :  P  L  A  R  M  G  A  T  V  T  G  V  D  A  V  D  K  N  I  K  I  A  R  L  H  A  :  D  L  D  P  Q  T  S  S  I  E  Y  R  C  T  T  A   : E  S  L  V  E  E  Q  R  Q  F  D  A  V  I  A  L  E  :  V  I  E  H  V  A  D  P  A  G  F  C  K  S  L  S  A  L  T  I  P  G  G  A  T  V  I  S  T  I  N  R  S  M  R  A  Y  A  T  A  I  V  A  A  E  Y  L  L  H  W  :  L  P  K  G  T  H  Q  W  S  S  F  L  T  P  E  E  L  V  L  I  L  Q  R  A  S  I  S  :  V  Q  E  M  A  G  F  V  Y  N  P  L  T  G  R  W  S  L  S  D  D  I  S  V  N  F  I  A  F  G  T  K  S  A  K  K  D  E  T  L  D  *  V  T  I  *  L  S  I  L  F  C  C  *  S  L  N  P  F  C  M  *  S  L  F  Q  F  C  W  M  M  N  A  I  S  I  C  *  N  M  N  I  H  I  T  S  S  *  L  E  *  K  C  T  I  S  K  F  Q  I  H  V  Y  Y  L  *  L  I  K  F  V  T   </first_frame>
            <second_frame>  F  *  T  D  *  D  L  S  V  E  S  L  N  S  A  T  S  V  L  I  N  S  E  T  R  F  P  F  S  P  P  H  K  I  R  *  H  G  D  L  I  P  K  L  L  S  Q  L  R  *  I  L  H  H  H  L  L  H  P  L  I  L  L  Q  Q  L  Q  V  L  S  M  N  L  N  L  P  N  S  L  P  L  P  K  P   : G  G  M  Q  K  D  P  L  S  H  Y  I  *  *  T  L  Q  D  L  L  L  L  G  P  L  F  V  G  T  S   : E  R  I  Q  I  A  L  D  L  L  K  D  *  S  L  L  M  L  V  V  E  A  E  F  Y  L  S :   L  W  L  E  W  E  L  R  S  R  E  L  M  L  W  T  K  I  L  R  L  L  A  F  M  R :   I  W  I  H  K  L  L  Q  L  N  I  G  A  Q  Q  L  :  K  A  W  L  K  N  R  D  N  S  M  L  *  L  R  *  R :   *  L  S  M  *  Q  I  L  L  D  S  A  N  H  Y  Q  R  *  P  F  L  V  V  L  Q  *  Y  Q  R  L  I  V  Q  *  E  H  M  Q  R  Q  L  L  Q  Q  S  I  S  Y  I  G :   F  Q  K  V  H  I  N  G  Q  A  F  *  P  Q  K  N  *  S  S  F  F  S  A  L  L  Y  R :   C  K  R  W  L  D  L  C  T  T  L  *  R  V  A  G  P  C  P  M  T  S  V  L  I  S  S  L  S  E  Q  N  Q  P  R  R  M  K  L  *  I  K  L  R  Y  S  C  Q  F  Y  S  A  V  N  L  L  T  H  S  V  C  N  L  F  F  S  F  V  G  *  *  M  Q  F  L  Y  V  R  I  *  T  S  T  S  Q  V  L  N  L  N  E  N  V  P  F  R  N  F  K  Y  M  C  I  I  F  D  *  *  N  L  *  L  </second_frame>
            <third_frame>   F  E  P  T  E  I  S  L  *  S  L  S  T  Q  R  R  P  F  *  *  T  Q  R  P  G  F  H  F  L  H  L  T  K  S  G  N  M  A  I  L  F  R  S  F  S  A  N  S  D  K  S  S  T  T  T  S  S  I  P  *  Y  F  Y  N  N  F  K  F  S  Q  *  I  *  T  C  Q  I  L  C  H  C  R  N  L  :  V  G  C  R  R  T  L  *  A  I  T  S  D  E  P  Y  K  T  C  F  Y  *  V  H  S  L  S  A  L  Q  :  K  G  S  K  L  H  *  T  F  *  R  T  E  V  C  *  C  W  L  W  R  R  N  F  I  *   : A  F  G  S  N  G  S  Y  G  H  G  S  *  C  C  G  Q  K  Y  *  D  C  S  P  S  C   : G  F  G  S  T  N  F  F  N  *  I  S  V  H  N  S  * :   K  P  G  *  R  T  E  T  I  R  C  C  D  C  A  R   : G  D  *  A  C  S  R  S  C  W  I  L  Q  I  I  I  S  V  D  H  S  W  W  C  Y  S  D  I  N  D  *  S  F  N  E  S  I  C  N  G  N  C  C  S  R  V  S  P  T  L   : A  S  K  R  Y  T  S  M  V  K  L  S  N  P  R  R  T  S  P  H  S  S  A  R  F  Y  I   : G  A  R  D  G  W  I  C  V  Q  P  F  D  G  S  L  V  L  V  R  *  H  Q  C  *  F  H  R  F  R  N  K  I  S  Q  E  G  *  N  S  R  L  S  Y  D  I  A  V  N  F  I  L  L  L  I  S  *  P  I  L  Y  V  I  S  F  S  V  L  L  D  D  E  C  N  F  Y  M  L  E  Y  E  H  P  H  H  K  F  L  T  *  M  K  M  Y  H  F  E  I  S  N  T  C  V  L  S  L  I  D  K  I  C  N  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0023C09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7327" stop="7074"/>
                    <exon start="6678" stop="6589"/>
                    <exon start="6087" stop="6009"/>
                    <exon start="5786" stop="5709"/>
                    <exon start="4319" stop="4271"/>
                    <exon start="3116" stop="3067"/>
                    <exon start="2342" stop="2193"/>
                    <exon start="1727" stop="1647"/>
                    <exon start="1541" stop="1416"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLNRLRSLCRVSQLSDVRFDKLRDPVSIFSTSQNQVTWRSYSEASQPTPINPPPPPPPSPNTSTTTSSSLNEFELAKFSAIAETWWDAEGPFKPLHLMNPTRLAFIRSTLCRHFRKDPNCTRPFEGLKFVDVGCGGGILSEPLARMGATVTGVDAVDKNIKIARLHADLDPQTSSIEYRCTTAESLVEEQRQFDAVIALEVIEHVADPAGFCKSLSALTIPGGATVISTINRSMRAYATAIVAAEYLLHWLPKGTHQWSSFLTPEELVLILQRASISVQEMAGFVYNPLTGRWSLSDDISVNFIAFGTKSAKKDETLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="18880" PGL_stop="9099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18880" e_stop="18677"/>
            <exon e_start="18592" e_stop="18423"/>
            <exon e_start="18337" e_stop="18266"/>
            <exon e_start="17673" e_stop="17523"/>
            <exon e_start="14733" e_stop="14625"/>
            <exon e_start="14543" e_stop="14426"/>
            <exon e_start="12809" e_stop="12662"/>
            <exon e_start="11805" e_stop="11557"/>
            <exon e_start="11043" e_stop="10918"/>
            <exon e_start="10785" e_stop="10685"/>
            <exon e_start="9683" e_stop="9609"/>
            <exon e_start="9447" e_stop="9099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.966"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.941"/>
          <exon-intron don_prob="0.989" acc_prob="0.982" e_score="0.987"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="18880" e_stop="18677" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18676" i_stop="18593" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18592" e_stop="18423" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="18422" i_stop="18338" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18337" e_stop="18266" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18265" i_stop="17674" i_length="592"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17673" e_stop="17523" e_length="151"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.969">
            <gDNA_intron_boundary i_start="17522" i_stop="14734" i_length="2789"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14733" e_stop="14625" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14624" i_stop="14544" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14543" e_stop="14426" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.954">
            <gDNA_intron_boundary i_start="14425" i_stop="12810" i_length="1616"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12809" e_stop="12662" e_length="148"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.814">
            <gDNA_intron_boundary i_start="12661" i_stop="11806" i_length="856"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="11805" e_stop="11557" e_length="249"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.920">
            <gDNA_intron_boundary i_start="11556" i_stop="11044" i_length="513"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="11043" e_stop="10918" e_length="126"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10917" i_stop="10786" i_length="132"/>
          </intron>
          <exon e_serial="10" e_score="0.941">
            <gDNA_exon_boundary e_start="10785" e_stop="10685" e_length="101"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="10684" i_stop="9684" i_length="1001"/>
          </intron>
          <exon e_serial="11" e_score="0.987">
            <gDNA_exon_boundary e_start="9683" e_stop="9609" e_length="75"/>
          </exon>
          <intron i_serial="11" don_prob="0.989" acc_prob="0.982">
            <gDNA_intron_boundary i_start="9608" i_stop="9448" i_length="161"/>
          </intron>
          <exon e_serial="12" e_score="0.926">
            <gDNA_exon_boundary e_start="9447" e_stop="9099" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18880" stop="18677"/>
              <exon start="18592" stop="18423"/>
              <exon start="18337" stop="18266"/>
              <exon start="17673" stop="17523"/>
              <exon start="14733" stop="14625"/>
              <exon start="14543" stop="14426"/>
              <exon start="12809" stop="12662"/>
              <exon start="11805" stop="11557"/>
              <exon start="11043" stop="10918"/>
              <exon start="10785" stop="10685"/>
              <exon start="9683" stop="9609"/>
              <exon start="9447" stop="9099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4003-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18840" stop="18677"/>
              <exon start="18592" stop="18423"/>
              <exon start="18337" stop="18266"/>
              <exon start="17673" stop="17523"/>
              <exon start="14733" stop="14625"/>
              <exon start="14543" stop="14426"/>
              <exon start="12809" stop="12662"/>
              <exon start="11805" stop="11557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14657" stop="14625"/>
              <exon start="14543" stop="14426"/>
              <exon start="12809" stop="12662"/>
              <exon start="11805" stop="11581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1715" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTAGCAAAGTCTCAGTCTTCTTTGACAAACCCCCAAAGCGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG : GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG : GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAG : GTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG : AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAG : GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG : TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG : CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG : GGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAG : ATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAG : ATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG : CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGA</gDNA_template>
            <first_frame> L  *  Q  S  L  S  L  L  *  Q  T  P  K  A  P  *  K  E  Y  S  *  K  F  Q  Y  C  D  F  A  R  N  I  Y  S  A  S  L  Q  S  P  L  L  C  P  V  W  K  L  R  T  Q  T  P  P  E  L  K  N  S  S  N  S  Q  M  K  H  S  K  :  G  I  S  I  R  K  L  L  I  C  T  H  K  R  L  S  *  T  V  R  M  R  C  T  M  L  T  V  R  L  L  T  P  N  W  R  N  M  E  A  Q  Y  R  M  E  L  E  L  L  K  L  T  L  D  I  Q  R :   V  I  I  G  E  E  L  H  I  W  Q  W  G  S  S  K  M  H  S  R  I  F  N  R :   S  R  N  Y  V  Q  T  T  Q  M  L  P  K  N  *  R  N  V  R  K  L  S  *  S  *  N  L  K  K  L  F  L  S  Q  N  L  R  G  V  Q  *  L  T  L  L  I  I  V  L  *  :  R  W  S  L  N  M  L  V  Q  E  *  R  E  M  L  *  H  *  I  L  *  R  R  C  W  M  T  S  K  T  R  R  T  C  I  R   : G  M  P  T  K  *  Y  C  K  Q  E  K  C  C  E  H  C  P  P  L  L  T  L  L  F  P  K  G  S  T  S  L  Y  V  V  M  Y  M  V  S :   F  M  T  S  *  I  F  S  S  S  M  G  F  H  Q  K  T  I  R  I  C  S  M  V  I  L  L  I  E  G  L  S  L  *  R  S  Y  *  H  Y  L  P  S  S  A  C  V  H  Q  :  L  Y  T  W  R  E  E  I  T  K  A  R  A  *  T  K  Y  M  G  L  R  A  R  S  D  P  S  *  V  K  Y  L  W  N  S  L  Q  K  C  S  V  A  Y  L  W  P  M  S  *  M  R  K  S  L  *  Y  M  E  V  F  L  V  L  M  A  *  S  S  L  I  L  E  Q  L  I  G  F  V  S  P  Q  K  R  :  G  *  C  V  N  C  C  G  V  I  H  N  L  S  L  V  E  D  L  V  N  E  V  L  V  F  L  S  G  E  T  *  L  K  D  S  C  R  K  I  I  *  :  I  *  W  C  D  L  M  K  *  R  M  K  V  M  R  L  S  M  T  A  N  S  *  R  C  F  P  L  P  I  I  V  T  R :   W  V  T  R  V  L  L  Y  D  L  R  L  P  I  *  S  Q  I  L  *  H  F  Q  Q  C :   H  I  L  M  S  N  Q  W  H  M  P  T  T  S  F  A  C  F  L  K  N  S  G  T  *  R  S  V  L  Q  S  M  R  P  F  V  *  L  T  K  S  I  H  I  R  R  Q  K  S  *  Y  L  Q  P  I  S  C  S  V  I  I  R  T  T  S  *  L  A  R  S  M  *  G  S  S  P  P  L  F  *  L  R  R  K  H  F  L  Y  D  N  N  V  V  W  W  I  V  L  C  I  I  Y  I  P  L  C  K  I  V  T  L  L  I  S  F  R </first_frame>
            <second_frame>  F  S  K  V  S  V  F  F  D  K  P  P  K  R  H  K  K  S  I  H  E  N  S  S  I  V  T  S  H  A  T  S  T  Q  P  A  S  S  R  H  C  Y  A  R  Y  G  S  *  E  L  K  R  L  P  S  *  R  T  Q  A  T  R  K  *  S  I  Q  R :   A  *  V  F  A  S  Y  *  S  V  H  T  S  D  *  V  E  R  *  E  C  G  V  L  C  *  P  C  V  C  S  L  Q  I  G  G  I  W  K  R  N  T  G  W  N  *  S  Y  *  N  *  P  *  I  F  K   : G  L  L  *  E  R  S  C  I  F  G  N  G  E  V  Q  R  C  T  Q  G  F  S  T   : G  Q  E  I  M  S  K  R  P  R  C  Y  Q  K  I  E  G  M  *  E  S  C  H  E  A  K  I  *  R  S  Y  F  C  P  R  I  S  E  A  F  S  S  *  L  Y  *  L  S  F  C  R :   G  G  A  S  I  C  W  C  K  N  R  G  R  C  C  N  I  R  F  C  E  E  D  A  G  *  L  Q  K  P  E  E  L  A  *  E  :  V  C  L  P  N  S  T  A  N  K  R  N  V  A  S  T  A  L  P  C  *  H  C  C  S  R  R  E  A  L  H  C  M  W  *  C  T  W  S   : V  L  *  P  P  K  Y  F  R  A  Q  W  A  S  I  R  R  Q  S  V  S  V  Q  W  *  F  C  *  *  R  V  F  L  S  R  G  H  I  D  I  I  C  L  Q  V  H  V  S  I  S :   Y  T  P  G  E  R  K  S  R  K  Q  E  H  E  Q  N  I  W  V  *  G  R  G  Q  I  Q  V  K  *  N  I  C  G  T  L  C  R  S  V  L  L  L  T  F  G  P  C  H  K  *  E  S  L  C  S  T  W  R  S  F  *  C  *  W  R  E  A  L  *  Y  *  S  N  *  S  V  L  *  A  P  R  R  G :   V  N  V  *  I  V  V  E  *  S  T  T  S  A  W  *  R  T  *  *  T  R  C  W  S  F  F  R  G  R  R  N  *  K  I  L  A  G  K  *  S  R :   F  S  G  A  I  S  *  S  E  G  *  R  L  *  D  *  A  *  R  Q  T  H  N  G  V  F  R  S  Q  L  L  *  P   : D  G  *  Q  G  C  F  Y  T  I  *  G  S  R  Y  E  A  K  Y  C  D  I  F  S  S   : A  T  S  *  C  Q  T  N  G  I  C  Q  Q  L  P  S  H  V  F  L  K  T  L  E  P  N  V  Q  Y  Y  N  R  C  D  L  L  S  D  *  P  R  A  Y  T  S  G  G  K  R  A  S  T  Y  S  Q  L  A  A  V  S  L  F  G  Q  L  P  D  L  P  A  A  C  E  D  P  H  L  L  C  F  D  *  G  V  N  T  F  S  T  I  T  M  S  C  G  G  L  S  S  V  L  F  I  F  L  F  V  R  L  L  H  F  S  F  L  L   </second_frame>
            <third_frame>   L  A  K  S  Q  S  S  L  T  N  P  Q  S  A  I  K  R  V  F  M  K  I  P  V  L  *  L  R  T  Q  H  L  L  S  Q  P  P  V  A  I  V  M  P  G  M  E  A  E  N  S  N  A  S  R  A  E  E  L  K  Q  L  A  N  E  A  F  K   : G  H  K  Y  S  Q  A  I  D  L  Y  T  Q  A  I  E  L  N  G  E  N  A  V  Y  Y  A  N  R  A  F  A  H  S  K  L  E  E  Y  G  S  A  I  Q  D  G  T  R  A  I  E  I  D  P  R  Y  S  K  :  G  Y  Y  R  R  G  A  A  Y  L  A  M  G  K  F  K  D  A  L  K  D  F  Q  Q  :  V  K  K  L  C  P  N  D  P  D  A  T  K  K  L  K  E  C  E  K  A  V  M  K  L  K  F  E  E  A  I  S  V  P  E  S  Q  R  R  S  V  A  D  S  I  D  Y  R  S  V   : E  V  E  P  Q  Y  A  G  A  R  I  E  G  D  V  V  T  L  D  F  V  K  K  M  L  D  D  F  K  N  Q  K  N  L  H  K  R :   Y  A  Y  Q  I  V  L  Q  T  R  E  M  L  R  A  L  P  S  L  V  D  I  V  V  P  E  G  K  H  F  T  V  C  G  D  V  H  G  Q  :  F  Y  D  L  L  N  I  F  E  L  N  G  L  P  S  E  D  N  P  Y  L  F  N  G  D  F  V  D  R  G  S  F  S  L  E  V  I  L  T  L  F  A  F  K  C  M  C  P  S   : A  I  H  L  A  R  G  N  H  E  S  K  S  M  N  K  I  Y  G  F  E  G  E  V  R  S  K  L  S  E  I  F  V  E  L  F  A  E  V  F  C  C  L  P  L  A  H  V  I  N  E  K  V  F  V  V  H  G  G  L  F  S  V  D  G  V  K  L  S  D  I  R  A  I  D  R  F  C  E  P  P  E  E   : G  L  M  C  E  L  L  W  S  D  P  Q  P  Q  P  G  R  G  P  S  K  R  G  V  G  L  S  F  G  G  D  V  T  K  R  F  L  Q  E  N  N  L   : D  L  V  V  R  S  H  E  V  K  D  E  G  Y  E  I  E  H  D  G  K  L  I  T  V  F  S  A  P  N  Y  C  D  Q  :  M  G  N  K  G  A  F  I  R  F  E  A  P  D  M  K  P  N  I  V  T  F  S  A  V  :  P  H  P  D  V  K  P  M  A  Y  A  N  N  F  L  R  M  F  S  *  K  L  W  N  L  T  F  S  I  T  I  D  A  T  F  C  L  T  D  Q  E  H  T  H  Q  E  A  K  E  L  V  L  T  A  N  *  L  Q  C  H  Y  S  D  N  F  L  T  C  P  Q  H  V  R  I  L  T  S  F  V  L  I  K  A  *  T  L  S  L  R  *  Q  C  R  V  V  D  C  P  L  Y  Y  L  Y  S  S  L  *  D  C  Y  T  S  H  F  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0023C09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18800" stop="18677"/>
                    <exon start="18592" stop="18423"/>
                    <exon start="18337" stop="18266"/>
                    <exon start="17673" stop="17523"/>
                    <exon start="14733" stop="14625"/>
                    <exon start="14543" stop="14426"/>
                    <exon start="12809" stop="12662"/>
                    <exon start="11805" stop="11557"/>
                    <exon start="11043" stop="10918"/>
                    <exon start="10785" stop="10685"/>
                    <exon start="9683" stop="9609"/>
                    <exon start="9447" stop="9388"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1500</number_coding_nucleotides>
                  <number_encoded_amino_acids>500</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTQHLLSQPPVAIVMPGMEAENSNASRAEELKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHSKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATKKLKECEKAVMKLKFEEAISVPESQRRSVADSIDYRSVEVEPQYAGARIEGDVVTLDFVKKMLDDFKNQKNLHKRYAYQIVLQTREMLRALPSLVDIVVPEGKHFTVCGDVHGQFYDLLNIFELNGLPSEDNPYLFNGDFVDRGSFSLEVILTLFAFKCMCPSAIHLARGNHESKSMNKIYGFEGEVRSKLSEIFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKLSDIRAIDRFCEPPEEGLMCELLWSDPQPQPGRGPSKRGVGLSFGGDVTKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVPHPDVKPMAYANNFLRMFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 45 chains have been computed
$ 
$ memory statistics:
$ 8480 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2120 bytes was the average size of a spliced alignment
$ 7312 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3656 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 45 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-10 08:47:02
-->
