<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-20 23:15:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0023C09-J59nT/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0023C09-J59nT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0023C09-J59nT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318698" ref_strand="+" ref_description="SGN-U318698        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: EMB3002 | hexaprenyldihydroxybenzoate methyltransferase, identical to hexaprenyldihydroxybenzoate methyltransferase SP:O49354 from (Arabidopsis thaliana) | chr2:13164249-13167009 REVERSE | Aliases: F7F1.13, F7F1_13, EMB3002, EMBRYO DEFECTIVE 3002(evalue: 1e-115, score=413) genbank/nr: gi|15224587|ref|NP_180649.1| dihydroxypolyprenylbenzoate methyltransferase [Arabidopsis thaliana] gi|21264383|sp|O49354|COQ3_ARATH Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor (Dihydroxyhexaprenylbenzoate methyltransferase) (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase) (DHHB methyltransferase) (DHHB-MT) (DHHB-MTase) gi|25408111|pir||C84714 dihydroxypolyprenylbenzoate methyltransferase [imported] - Arabidopsis thaliana gi|3201619|gb|AAC20726.1| dihydroxypolyprenylbenzoate methyltransferase [Arabidopsis thaliana] gi|15027943|gb|AAK76502.1| putative dihydroxypolyprenylbenzoate methyltransferase [Arabidopsis thaliana] gi|20259179|gb|AAM14305.1| putative dihydroxypolyprenylbenzoate methyltransferase [Arabidopsis thaliana](evalue: 7e-114, score=413)">
      <seq>gggcgattggcggccaatcggccgaattgatggcttcgaagctcgttttgaaccgactgagatctctctgtagagtctctcaactcagcgacgtccgttttgataaactcagagacccggtttccattttctccacctcacaaaatcaggtaacatggcgatcttattccgaagcttctcagccaactccgataaatcctccaccaccacctcctccatcccctaatacttctacaacaacttcaagttctctcaatgaatttgaacttgccaaattctctgccattgccgaaacctggtgggatgcagaaggaccctttaagccattacatctgatgaaccctacaagacttgcttttattaggtccactctttgtcggcacttcagaaaggatccaaattgcactagaccttttgaaggactgaagtttgttgatgttggttgtggaggcggaattttatctgagcctttggctcgaatgggagctacggtcacgggagttgatgctgtggacaaaaatattaagattgctcgccttcatgcggatttggatccacaaacttcttcaattgaatatcggtgcacaacagctgaaagcctggttgaagaacagagacaattcgatgctgtgattgcgctagaggtgattgagcatgtagcagatcctgctggattctgcaaatcattatcagcgttgaccattcctggtggtgctacagtgatatcaacgattaatcgttcaatgagagcatatgcaacggcaattgttgcagcagagtatctcctacattggcttccaaaaggtacacatcaatggtcaagctttctaaccccagaagaactagtcctcattcttcagcgcgcttctatatcggtgcaagagatggctggatttgtgtacaaccctttgacgggtcgctggtccttgtccgatgacatcagtgttaatttcatcgctttcggaacaaaatcagccaagaaggatgaaactctagattaagttacgatatagctgtcaattttattctgctgttaatctcttaacccattctgtatgtaatctctttttcagttttgttggatgatgaatgcaatttctatatgttagaatatgaacatccacatcacaagttcttaacttgaatgaaaatgtaccatttcgaaatttcaaatacatgtgtattatctttgattgataaaatttgtaacttcataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0023C09-J59nT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0023C09.1" temp_strand="-" temp_description="C07HBa0023C09.1  AC210349.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0023C09 upload_account_name:france">
        <position start="7645" stop="899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7342" g_stop="7074" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="298" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7073" i_stop="6679" i_length="395">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6678" g_stop="6589" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="388" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6588" i_stop="6088" i_length="501">
            <donor d_prob="0.373" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6087" g_stop="6009" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="467" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6008" i_stop="5787" i_length="222">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5786" g_stop="5709" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="545" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5708" i_stop="4320" i_length="1389">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4319" g_stop="4271" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="594" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4270" i_stop="3117" i_length="1154">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3116" g_stop="3067" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="644" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3066" i_stop="2343" i_length="724">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2342" g_stop="2193" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="794" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2192" i_stop="1728" i_length="465">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="1727" g_stop="1647" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="875" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="1646" i_stop="1542" i_length="105">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1541" g_stop="1204" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="876" r_stop="1213" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1214" polyA_stop="1238"/>
      <MATCH_line gen_id="C07HBa0023C09.1" gen_strand="-" ref_id="SGN-U318698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1184</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0023C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7342" e_stop="7074"/>
          <exon e_start="6678" e_stop="6589"/>
          <exon e_start="6087" e_stop="6009"/>
          <exon e_start="5786" e_stop="5709"/>
          <exon e_start="4319" e_stop="4271"/>
          <exon e_start="3116" e_stop="3067"/>
          <exon e_start="2342" e_stop="2193"/>
          <exon e_start="1727" e_stop="1647"/>
          <exon e_start="1541" e_stop="1204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCGAAGCTCGTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTGGTATTTAATTTTCAAAGTTTCCGCAATTTTTTTTTTGGTATTGGAATGAATGGGCTCAAATGGAGTTGAAATGGTTATTGAGGATTCATATAATCGACCTGAACTACTTTGAAATTGAGGCGTAGATACCGATATATATATATATTTAAAAATGTAGTTTTTTCATTGTATTGACATGAGATGAACTAGTATAATTTTTGAATGTCTAAAAGTTTTAAATTTTAAACATATTTCCAATTTAGCTTTGAAATTAGTCATATTAACTCTGTAAGGAAAAATGTCCCATAAATAATGACTGAGGGGGAGTTTTGGAATTGCAATTTTGAATCTTTTTCATTTGATTTGCTTTTCCACTTTGATATACTGAATTCAATTGTGCGCCTGTGCTAAATCAGGTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAGGTAGTATTGAGGATGTAATGTCTGAAAGATTAGATTGCATATAAAGAGTTATCTCATATTTCATTTAGTACTTGTTGGCGTTCTCTATTTTTAGGACCAATGTTTGATGCTTGTATAATAATGTTGGAGTTGAAGAGATTATGTCGCTTGTGTTAGAGAAGGATTTAGCTAGATTTGTTGTTCATATTCTTCTTTTCGCGAACTATACTTATATTTGCTCTTATGAGGGAATTTCATGATTTGAATGGACATTCTTTTGGCCTTTGCTGGTCTGAGACTAGAGGTGGTTGTTAGGAAAGGAATTAATAGTACAGTATGGGAGAAAAGGGGAAAGGAAATGTAATATGAATAGGAGCTTATAAATAGCACTATTGGATAGAGAAGGTAATGGATAAGCAAAAGGAGAGTATAGCTGAGAAAGGATCCAAATTTCCCTAGGAGCTCCACCTTATTTTCACTCTTCTTGCATCTCTGGAGGCTAAAACTTTTGTATTGTATCAGAAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAGGTATACATTTGTCAAGCTTAATATTCTATTGGAGTCACCTTTACCTTTGCATATGGCAGAATATTTTTCTCCTGTGATTACCATTATTAGCCTAGTATTTTTCTAAGTGCTATTGTTAGCTTAGTTAGACTTAGACAATGTCTTTGTCACTCAATGAAGTGAATATTTATATTAAGCATGCGGCATATAGTCACACACATCTCATTTTTACTCTTAATTCAGCCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCGGTATGTTTACTTGAATGTTTCCAGGATGCACCATTAAACTGCTGTTTTTTTTTTTGCTTGTCTGGTTAATGTACAGTTTAAGGATCTTCCCATACCTGAGATATCATGAGTATTGGCATCAAAATTTACTAGTCTTATATTGATTCGGAGTTTATTGGTTCCTCACCTTGAGGGACACATACAATTTTGCTTCGTCAAATTATAGTTCATTTGAAGGTCACAGTGCTTATGATGGAAGAAAAGTTAAAAATTTAGAAGGGTTTTGAACTGATAACTTGAATGTTCATTGCCTAATTATAGTTAGTCATACTGACAACAAGTGCAAGAAAAAATTCATACGATGTTTATTCATCTTGGTTCAAATCCTACTTAGAGGTCCACTAGAGATAAAAATATGTTGAAGAAACAAGATCTTTCTTTTGATTCCTTTTAGGCAATTTGAAAATTAAAGAAATGGTCAAAGCCTAGGCATCATCGGGTGGAGATGAATCAATAGATTGGGGTTCATTAGGACCAGTGTCTTGTGCTTCCAGGATAGAAATCCTGTTGTTAGTCTCACAGCCGATGTTGTACATTACTACACATTAGAAGGTCCATGGGTTGGCAAGTTACCTATTTAGTAAAGATAGAACTAGACGTTTTGTATAGATTCTGTTATATTTTAAAGAAAATGGCACAGCTCTTTTTGCCTCTTCCACTGTATGAGTTTTCCTTTTTGCACAAACTGGGAACAAGCCAGATAGTTCCTTTATGCTATTGTTTCCCTGCACTCATATATGCTGTGATGTTCTGGAGCTTCACCGACAAAATTTGCACCAAGGCGTTCCCATGGTTGATATACTAAAACCAAAAGGGTGTAAAGTTAAATCATGTTCAAAAGATCGCATTTAAGTTGCAAAAATACCTAATTTTAGTCCATGTGGCTGTGTTGTCTTGGTATTCAATATAATATGTGTAGGATATTAACTCCTGGTATATGTATTCAACCAATATTATTGACTTCCTTAATTTTTTTTATCCAAAAAAATATTTTCAGTATATCCTTATATATATAATATATGTGCTTGTCCTTCCAACAGCCTAAGCAAAACTCTTGAGCCTGTGTCAAAATTTTCAAGGACTATTGTGTCTTTATGCAACAACAGAAGTTCTAGAACCTACTAGAGCATATTCTCTAAAATAATGTTGTTGATGAAGTAGTTGAAGCAATTTCGTAGAACTAATATACTTTCATTATATACAATGGTAGGATTAGCACATATCTCAGCAATAGATTTGCTGTTTGTTAAGCTAGAGTGCTATTTTAAACAGATAGTTTTTGAATTGTGACAGTCAAACCCGTATACATTCTATATGGTGGATGCTTATGAATGCTGATATTTCTTTCAGGATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTGGTACATGCCATACTTGTTTGATGAGAATTTAGTCCAAATATTGGTGACTTCTATATGTGCATGTTAATCTTTCATCTCGATGTACAATGAACAGACATTATCTTTTCTTTTTTATCATGTTGGTGCCTTCTTTAGTAAAGAATAGGAAAACGAGTCTGCATAACATCGGTTTTTGTTATGAATCATGTTAATGATCAAGCACTGGTTTAATCATGCTCAACTTATCAAATAGAAATGAATTTTTGGCATCTTAGCAAAGCCTCACTTTCTTTCCAAAATAGTTGAAGTGACAGATGACCAACTTGTTGTATGTTATTGCAATCTCCATTTGCAATTTTTATTTGTTGTAGTTCCAATTTAAGCTGCAATAGTGTGAAATTACTGCCGTTTAGTTGCATGAACCATAACAGAGACTCCTAGGGTAATTCATGGTCAATTATTATCACTGGTTAACCTCCTCCTCCTTTATGGAGAGTATGGAAGGTGGGTAATTGGTCATGATTGCATACTAATTAGTTGCAGCTTCATGATAATTCAGCTTTGTAGTTGTTATAACCCCTAATTTCCGTTTTCACTCAACTGTGTGGTTGGTTATTTTCTCGCTGTGAAAACTTAGCTGAATTATCATGTGTTCAATGATTGGAACTGTTTTTGGACTTGCAAAAATATCAGTGTGTGAGATTCCTGGTGAAAAAAAAGATATGTGCTTTGATGATTTTGTGGTGAACTTAGTTGCTTCTGTGTCTGTGATTTAGATTCTTTAGACTCTTTTCTTTGTAGTTATGTCCTCTTTCCTGGAAAAAAAACATATCCATCTCATTTTATAGTAGAAAAAAGACCTTTTTCAAGACAACTTGTGCCTAATTAAGTTACATACCAGCTACTTAAAATGTTAAAGGAAATCATGAATCAAGCTCAAGTGTTTTAGTTATATGGAGATTAGTCTATGTCACAAGGACATGGAATTTTTAATGATTTTGTTCTTGTTTATGTTGTTACGTACTTTTCAGCTATGGTGTATAACAATTTTAGCTATTGACACATCTGTTGATTTGAAGAAAAACGAATTCTCTTGTTTTATTTAAAATCTCAATTTAGTTGAATATCAAAGATTGTTCTTCGAAGAATGACCCTATTGAATGTTATGTCGACAGAAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAGGTATGACTTAATAAGTGATAAGCTAACTTTGTTCAAAGATTTATTATCTTCAGTACAATCCATCTGTTTTAGTAGATTGTACTTATATCATTTGTACCTTTTGCTTTGCAAAACTTCCACTATTTATTTGAAGTTAACATAGTACATTGTATAAAAGGCTTGGTCCTTTAAGCAGTTCTATGCTTTTATAGCTTTGTTGCACTTGCTCAAGTCTAATAACTGGCACCCAGGGGTGTGGTCTAGAGGTCAATGGAGTGGGTGAAAACCTTGGAGAGTAGGAGTCAAATCCTAACAAATACCACAATGCTAGGTGATTTCTTTCTATTTGCTGAAGCCTTTGTGGGCAGAGTTACCTGATTCATGTGCTGGTGAAAGGTTGCAGGTACCCGTTGGAATAATCTAGGTCCTCTTGTAAAAGGTAGCAGGTATCTGTTAGAAAAGTCAAGGTCCGCGCAAGCTTACCTGACCATCTTTTAGAAAGTCTAGTAATTGGAGGCTTTTAGAGCTCTCACAGGTCTGTTACACAGGGACAGATACTGACACAGATGGAGGGATGTATGTGATATGATCTCTTCTAGTATGTGTATCTAAGGAATTCTGACTGGTGATGTAAAAATGTAACAACTGGGGCAATATCGAAGTATTCTAATCTCCCCTCTTAAGAGGACCCAACTTCCGATCTGATCTCTTCTAGTATGTGTATCTTATTCTGCCTCTTTTGTAGGTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGGGTAAATATATTTAGTGGATCTTCTAAATTGTATTGGTAATTTTTGGTTGATGCCTTGCAAAACTTAAATGATATTTGTGCATGTGAGATTTGCTAGTTCACTTTGAACAAATAGAGGAAGGTGTATGAAAGGTGTGTCTAGATAGTTCTATGTATTGTTATTCTCTCGCACAAATCGAACTTCCAATTTATGTTGGAGCATTTAATTTGATTCAAATTTGATTATGCTTCAAAGTATTCCAATTACGTTTTGAGGACTCATTTTGCTCTATTTGTTAGGATTCATCTCGATGATATATACTAGCATTATCTGTACATAATAGCAGCCATGTCAAAAGGCAATTTTCTACTAATTGTTGTGTTCTTGTCAGCCATGCTTCCTATGTCTCTGTGTGTGTGTTTCTTGCATTTCTTTTTGGAGGGTTGTACAATTGCAAATTGCTAATGTTATAACTGGACTTTACAGCTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCCAGAAGAACTAGTCCTCATTCTTCAGCGCGCTTCTATATCGGCAAGTGGATTAAACATGCTTCTCTGTTTTTCACCTGTATCTTAATCAAGTCAATATCTATCTGTTTGCGCCCATTTGAAACAGTAATCTTTCTGCATTTTACAGGTGCAAGAGATGGCTGGATTTGTGTACAACCCTTTGACGGGTCGCTGGTCCTTGTCCGATGACATCAGTGTTAATTTCATCGCTTTCGGAACAAAATCAGCCAAGAAGGATGAAACTCTAGATTAAGTTACGATATAGCTGTCAATTTTATTCTGCTGTTAATCTCTTAACCCATTCTGTATGTAATCTCTTTTTCAGTTTTGTTGGATGATGAATGCAATTTCTATATGTTAGAATATGAACATCCACATCACAAGTTCTTAACTTGAATGAAAATGTACCATTTCGAAATTTCAAATACATGTGTATTATCTTTGATTGATAAAATTTGTAACTTC</genome_strand>
        <mrna_strand>ATGGCTTCGAAGCTCGTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG..............................................................................................................................................................................................................................CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCCAGAAGAACTAGTCCTCATTCTTCAGCGCGCTTCTATATCG.........................................................................................................GTGCAAGAGATGGCTGGATTTGTGTACAACCCTTTGACGGGTCGCTGGTCCTTGTCCGATGACATCAGTGTTAATTTCATCGCTTTCGGAACAAAATCAGCCAAGAAGGATGAAACTCTAGATTAAGTTACGATATAGCTGTCAATTTTATTCTGCTGTTAATCTCTTAACCCATTCTGTATGTAATCTCTTTTTCAGTTTTGTTGGATGATGAATGCAATTTCTATATGTTAGAATATGAACATCCACATCACAAGTTCTTAACTTGAATGAAAATGTACCATTTCGAAATTTCAAATACATGTGTATTATCTTTGATTGATAAAATTTGTAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0023C09-J59nT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317380" ref_strand="+" ref_description="SGN-U317380        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: AT2G42810.2 | Symbol: None | similar to serine/threonine protein phosphatase PP1 isozyme 2 (TOPP2) [Arabidopsis thaliana] (TAIR:At5g59160.1); similar to serine/threonine protein phosphatase PP1 isozyme 8 (TOPP8) [Arabidopsis thaliana] (TAIR:At5g27840.2); similar to serine/threonine protein phosphatase PP1 isozyme 8 (TOPP8) [Arabidopsis thaliana] (TAIR:At5g27840.1); similar to serine/threonine protein phosphatase PP1 isozyme 2 (TOPP2) [Arabidopsis thaliana] (TAIR:At5g59160.2); similar to type 5 serine/threonine phosphatase 55 kDa isoform [Lycopersicon esculentum] (GB:AAN64317.1); similar to putative serine/threonine phosphatase [Oryza sativa (japonica cultivar-group)] (GB:AAV44139.1); contains InterPro domain TPR repeat (InterPro:IPR001440); contains InterPro domain Metallo-phosphoesterase (InterPro:IPR004843); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186) | chr2:17819012-17823715 REVERSE | Aliases: None (evalue: 0, score=861) genbank/nr: gi|28141085|gb|AAO26215.1| type 5 protein serine/threonine phosphatase 62 kDa isoform [Lycopersicon esculentum] >gi|28141004|gb|AAO26213.1| type 5 protein serine/threonine phosphatase 62 kDa isoform [Lycopersicon esculentum] (evalue: 0, score=1036)">
      <seq>attcatgaaaattccagtattgtgacttcgcacgcaacatctactcagccagcctccagtcgccattgttatgcccggtatggaagctgagaactcaaacgcctcccgagctgaagaactcaagcaactcgcaaatgaagcattcaaagggcataagtattcgcaagctattgatctgtacacacaagcgattgagttgaacggtgagaatgcggtgtactatgctaaccgtgcgtttgctcacaccaaattggaggaatatggaagcgcaatacaggatggaactagagctattgaaattgaccctagatattcaaagggttattataggagaggagctgcatatttggcaatggggaagttcaaagatgcactcaaggattttcaacaggtcaagaaattatgtccaaacgacccagatgctaccaaaaaattgaaggaatgtgagaaagctgtcatgaagctaaaatttgaagaagctatttctgtcccagaatctcagaggcgttcagtagctgactctattgattatcgttctgtaggatcaggccctggctcatcatatgttcccaccaaaacaactgctgtatcagcggcagcagcactaatgggagttctggtggtatatatggggactaaggcagccacaatggtggcagcagcagcttcggcagccttattggtggtcttgataacatttctttggggacgttgcagtgatggtttctttaccaagagtcgaacacttgaattagaggtggagcctcaatatgctggtgcaagaatagagggagatgttgtaacattagattttgtgaagaagatgctggatgacttcaaaaaccagaagaacttgcataagaggtatgcctaccaaatagtactgcaaacaagagaaatgttgcgagcactgccctcccttgttgacattgttgttcccgaagggaagcacttcactgtatgtggtgatgtacatggtcagttttatgacctcctaaatattttcgagctcaatgggcttccatcagaagacaatccgtatctgttcaatggtgattttgttgatagagggtctttctctctagaggtcatattgacattatttgccttcaagtgcatgtgtccatcagctatacacctggcgagaggaaatcacgaaagcaagagcatgaacaaaatatatgggtttgagggcgaggtcagatccaagttaagtgaaatatttgtggaactctttgcagaagtgttctgttgcttacctttggcccatgtcataaatgagaaagtctttgtagtacatggaggtctttttagtgttgatggcgtgaagctctctgatattagagcaattgatcggttttgtgagcccccagaagaggggttaatgtgtgaattgttgtggagtgatccacaacctcagcctggtagaggacctagtaaacgaggtgttggtctttctttcgggggagacgtaactaaaagattcctgcaggaaaataatctagatttagtggtccgatctcatgaagtgaaggatgaaggttatgagattgagcatgatggcaaactcataacggtgttttccgctcccaattattgtgaccagatgggtaacaagggtgcttttatacgatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaaaccaatggcatatgccaacaacttccttcgcatgttttcttaaaaactctggaacctaacgttcagtattacaatcgatgcgaccttttgtctgactgaccaagagcatacacatcaggaggcaaaagagctagtacttacagccaattagctgcagtgtcattattcggacaacttcctgacttgcccgcagcatgtgaggatcctcacctcctttgttttgattaaggcgtaaacactttctctacgataacaatgtcgtgtggtggattgtcctctgtattatttatattcctctttgtaagattgttacacttctcatttcttttagaatgttcaaattgggaaaagctttgataagtcgaattttggttttttctattttcttagttaaaatagtctataattttttccccacccaatcagccaagtgttactgttacgatgtctattttaccattggattgtcgtttgtctgtgcctgtggccagattactggtgtttcctactgattttgtttcgttattaataatgcttaacagcttctaatgagcaaatcctaacgatttgtaaagtttgtaccattaaacgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0023C09-J59nT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0023C09.1" temp_strand="-" temp_description="C07HBa0023C09.1  AC210349.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0023C09 upload_account_name:france">
        <position start="19125" stop="8528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18825" g_stop="18677" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18676" i_stop="18593" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18592" g_stop="18423" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="319" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18422" i_stop="18338" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18337" g_stop="18266" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="391" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18265" i_stop="17674" i_length="592">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17673" g_stop="17523" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="542" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17522" i_stop="16550" i_length="973">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16549" g_stop="16337" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="755" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16336" i_stop="14734" i_length="1603">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14733" g_stop="14625" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="864" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14624" i_stop="14544" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14543" g_stop="14426" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="865" r_stop="982" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14425" i_stop="12810" i_length="1616">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="12809" g_stop="12662" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="983" r_stop="1130" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="12661" i_stop="11806" i_length="856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="11805" g_stop="11557" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1131" r_stop="1379" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="11556" i_stop="11044" i_length="513">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="11043" g_stop="10918" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1380" r_stop="1505" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="10917" i_stop="10786" i_length="132">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="10785" g_stop="10685" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1506" r_stop="1606" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="10684" i_stop="9684" i_length="1001">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="9683" g_stop="9609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1607" r_stop="1681" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="9608" i_stop="9448" i_length="161">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="9447" g_stop="8873" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1682" r_stop="2256" r_length="575" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2291" polyA_stop="2308"/>
      <MATCH_line gen_id="C07HBa0023C09.1" gen_strand="-" ref_id="SGN-U317380" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2256</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0023C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18825" e_stop="18677"/>
          <exon e_start="18592" e_stop="18423"/>
          <exon e_start="18337" e_stop="18266"/>
          <exon e_start="17673" e_stop="17523"/>
          <exon e_start="16549" e_stop="16337"/>
          <exon e_start="14733" e_stop="14625"/>
          <exon e_start="14543" e_stop="14426"/>
          <exon e_start="12809" e_stop="12662"/>
          <exon e_start="11805" e_stop="11557"/>
          <exon e_start="11043" e_stop="10918"/>
          <exon e_start="10785" e_stop="10685"/>
          <exon e_start="9683" e_stop="9609"/>
          <exon e_start="9447" e_stop="8873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAGGTAAATTCAATATACACAAACTTGAGGTTGTATCATGTGGATTTATGAATAATAAGTCTGTTTATGATTTCAATGTGTTTTCAGGGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAGGTAAGTATTTGAATTGTGAAAGAATTGGAATGGAATTGTGGTTTCTTTGTTTCTATTGATGTGTGATTAATTGCTGAGGTTGCAGGGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAGGTTGGTATTGTTTTTTGTAGCTTCTTCACTCATTTCAGCTGCAATTTTTTTATAAGCTTTATCTTAGGTACAACAGAAAATGTTGATGAAAAATCATTGCTTATGTAATTAGCTAACACATTTATTAGAGAAAATGATGACATACCGGTGACATTTCGTTGGGTTAATTAGCCACCTCATAGAAGATTCTTCTCTATGATTCACTTGAAAACATGTCCAAATGATACTTGAGATCTTAGCAGTAACTCGCCCATAAACAATTTAGTGGTTCAACAATGGAAGAGATATCAAGTAATCCTTTTGGACTGTTGTTTTCTTTTAAGAGAGGGCATCAATTTATTATTTTGTCTCAATACTGATTCTTGAAAGTTTTTTCTTGGATTTTTTTGACAAACTATATGGTCTTGTTTCCCAAGTGGTTTTCTTTGGTGTCTCCTCTGCATTATAGGCTCTAAATATGCTGTTTGCATGTATCTTTTGAGTCTGCTTTATAGTTTTCTGCAGAAGATGTCCCCTATCTTCTCTAGTCAGTGTCTGGAATAGTTTACCAATCTGCTAATTCTGGGATGTGTTCCTTTATTGTCTCACTCAGGTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAGGTAAGATAGCTCCAAGCTGATATTTCTTCCTTATATTATGCTCACGGAAGGTACCTTGGTCATAGAGTAAATTTCTTTGCAAAGCATGGCTTTGCACTATGTTTTCTTGTCTCATCTATGCGTATAGTTGCTGGATAAATTTCTTGCATTACATGTCATGGCATTTCATAAGGTGCAGGACATGGTTACTACAATGGAAAAATGCTTCTTTCCCTTTCCTTTCTTAATTTACTGCTGCTTGTTGCCATACACGTTTGATTCGTTAATTGAGGGATGAGAATTTCTCAATATCCTTGAAATGTTGAATTTACTGCCATGAGATTTACTTATTTGTAGAGGTTTGCACCTCTTTTGTGAAGTTTGATGCATCAGTAGTTTAGGTCTCACTTCTCAGTCTGATAGGTACTGGTTAGATGGTTTTTGTTGAAAAGTTTGAGAATGTGCGGGGGCATCAGTTTCGCCTGGGATAGATGGTAGAAAATGTTGACTTGTCCATGTGGAACTTTTCTTTTCTCTTCCCAACCTCTTCAAATGCTCTGAAGTAACCATAACAAGATAAAGAATAAATCCCTTTGATCTTTTCGACATTATCGTTTGGTTGCGAAGATGATATGTTGTTTGTTTACTATGTGCAAGTAAATAAAACATTACAAGATGTTGTTCACGAACTACTTCCAATCACTTAGTTCAAATTTAGCCATTACTTACACTTCGTGTCCCTTTCAGGAAACGCTGTAAACCTCTAACTCAAATTTTGGCAATTACTATAGTAGATTTTTAGTTAAATGACCCCCTGAATTGAACATGGGTTTGTCCTTTAGATTATTCAACAATAAACCTTCATTTGAAATAACAAGACAAAATAAGAATCTCTAAGCTTAGTCAACTTTCAACCTTTCATGTTAGTCCATATAATTTTCATTCTTATAAAAGTAAATTTTAATAGTAAAATTTACCTATTTCATCCTTATAGGATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAGGTTTGAGCCTTTATAAGAAAAATGTTGAACTAGTAGACACTCAAGTTAGTGGTAGTTCGCGAAATGGACATCCATCATAATCGGAATAGTTGAATAAGGATTAGTTGTAACCTAGAGCAAATGCTCGTATTTTATTTACATTCCATTGCGTTGCATTTGATTGAAAATTGTTCCTGTTCAATTGATATGTCCTATGTATGAAATTACTAGGAGCATGGTGTTCCAACTAAAGCCATTTTCGACCCTCTATATAGTATATTCAGCATTCTTAGTAGTTATTTGCTTCTTTTGGCCTTCTCTGAGGACCATATGAGTATGGTGTGAACTCTTCAGAAAATAGATCTCTAAAATCAGTCACAGGTTTAAGTGTTTTGCCTAGAGTACCACGTCATCCTTTGCTTTCTAACCATTAAAGTTTCTAATAAGTTAGTACTTATATTACTCAGAGCGACTTATAGATTCTTGCCCCATTATTTACGTGATACATCTCAATTCTTGGCACATCTGCTATTGTATTTTATGGGGAAGATTCTCTTTGGTAAGTAAGACAGTAGCGTTTTGCTCTGTGGGTCTCCTTTTAAACTTCAGGCTTAGAGTTCTTAGCTGCCCCTTGCTGAAGACATTCATCCCTTGCCTTATGCTTTTCGGGGTTGTTTGGTTTAGAGACAAAATTTTCAGGGGTTAGTAATGTAAGGATTAAGTAACAAAGAGATTAATAATCCAAGAATTTTTTCTTCTTGTATGTTTAGTTTGATATTTTTCCAAATAGTGTAAAATGTATATCATGAAATATGTTTTTACTTCTTAAAACCAAAAAAAAAAAATAGCTTATTTGTTATTATGATGTCGTTTTAATGTTTTTAGTCCATGGATTACTAATCCCCACATTCTTATTCCACATCATATCTGGTATAAAATAATTCATAGATTCCCGCATAACTTGTGTCTTATGCAAATATTATTTATGAGAAAAACATAAGTAGCAAAAAAGTTTATGCCAAAAACATAAGTAGCAACCAAGCATTGTCTAAATTAATGCTGGATTTTATGCAAAGGTTAAATTTCTTGACAGTAATTAGGGATTCAATCAGTTTCAAAAAAATTAGGGATTCAATCAGGATCTTATTCTGTAATTATACACTTACCAAAATCATTTACGTTGTAATTGCTATAAATTCCCATTTCAAACTATCCCTTGCTGTGTTAGCTTTATGTATGCACTATGCAGTAATTGCTAGTTTGCTGGTTCTATTTTGCCTTTCTTACCTTTAAATTTGGAGACTCTTTTAGGATGATTGGGCATGTGGCTGTCTGCATGTCTTGATCCTTGTCATTCTGACTCTTCCTTGCTTTTATGTGTCAGTACTGTTTTACATATCATATTGAGAAATCTGAGAGTTTGCGTGACATTTTTTTTGTACCCCATGATTTGTGTCTCTAACATAGTAAGACCACCTCTTGGTGTCAAGACTGTGCTGGGGAACTTGCATTCAGTGGTTTAATCTTTATTAATACTCTCTACTTCATCTAATCCAGTTAATGAGAAATCTGCTCGCTTTGTTTCACCTGAATTTACATGCCAGTTTGGTTCTTTAAATTGTAGAGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAGGTATGTTTCGTTTGAATGGTGTAATCTTCTCTTTATTTTTGAAACACTCTTAATCTTTCAACATTTGCTCTATTTTGACAGGTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAGGTAATGATATCCTGATGACGGATGCCTTTTTATAGCTTGTAGCTGTTATTTTTATCATTTGCTTGTCCTTTTTTTTCTCCTCCAGTTTCATTTCACCCCTCTAGAACAAGATTTTACGTCAGCATATGGTATTGACTAAGGCATGCATTTATAGAAGGCGTAGAACTATCTGGTGCTTGCTAGTGATGCTCCTACATGCAAGAATAACTAAAACAAAAAATTCTTGTTTCTTTAAAAAATTGCTGCTTGGTTCACTGATCTATTTGGAGAAACATAAAGGTTGATTCCTTTTGTCAGAAAAAAAGAGGGATGTTAGTGGCTTTTAGACGTCTTTAACCTGTAAGCAATTTGAAGGCGCTGGAACCTTTTTAAAGATCGTGGGCATGTTCCCTTTGTCGTATTTCTCCTTTTCGCCCCTCCCTAATTAAAGAATATGGTTCCTTTTGAGCTGAAATATTACTGCTATGCCATTTAGTTCGTAAGGCCTATCATACATATCTGAACCGCAGGCCCTTCCTCTTGTACTTCTCTTCCCACTTGTGAAACATCTCAGTCCCCTTCTTCACTGGAATCTGAGTTTGGATTTGTCTGATGATGCACTCGCCCACCATAAGCCTTTTCTCCCTACTTTAGGAAGCATTTTCACCTTCCCTTTAACCAGACTAGGACCTTCATATTTGGAATGCACTTTTTTTCCATTCAAGAGGAATGGTATAAAATAAAAGCTCTTGAACTTTATTGCGTTAGGAGCTGTGAAGGTCTGAAGGAGTCTGTATTTAGACTCTAAGTATCATGAACCTCCTATCCAGCTTCAATCTTGTGTCTTCTTCAACTTCGATTAACACTGGCCTGTTTCCAGAAATCCTCAGAAGCTCTGGCTCAGAACTGAACTGGCAAGGCAACCAGTCTAATCCAGACTGTATCCAACACCAACCCTGAGTGTCTGCCCGACCAGTGAGTTACTCCATACTTTTGAAACACCATCTTTGCTTGGTCTGATGGCCCGCGCCTCCTTCTGAGAGGAATTTAAGAAACCCCTCTACCTTTGAACGGTTGACAACCATGTGGATTAACCCACTTCTAGACCAATTTGATCTTCGGTTGTTTTAGGCTCTTCCCCAATCAATGTACCAAAAACCTCTATATAAAGTGTTAGCTTTTTCTCACGATACGCCCTCAACCTCCATCTCTTGCTATCCCTTGCTTTCTTTATCGGAGTTGCCAGCGGTTGTTAATATGACCAATTTGAGCAGAGTTTTGGATAACCCCTTTTACATGTACCCAAGTTTTATGAATGGAATTTTGACTTGCTTCTGTCATTGTCAAGCTAACTGGAGAACTCTTGACCAGAAAAATACGAAAGGGTAAGATTTAGTAAAGTAATTGTTTTTTCTGGTTTAATTAAGGAGCAAATCCTAAAGAACACTTGTTTGACTTTAGATATGTGCTGCAAGATATATCATTTAGTCCTTTATTCTCTCTTTCCTGCTGTTTATATATAGTGATAATACAATTTGCTGGTTCTATTTCTGTGCTTGGCGGAATGACTTGCTTCTTTTTGCCAGCTATAAGTCTCTACTGGCTGAACTGTTGTTCATCTTCTAATGTTGCTACAGTTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGGTAGATCGCCTGCTCTTTTCATCTTCAATGTTGCAAGTGTGTTCTTTTATATTATTACTCCTACCTAGTATTCTTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTTTTCCAGTACCCTATTTTTTACCTTAGTTATCTGTTTGTGTTAGTATTTATTTGCCTTTACTCATTCTAGTTCTATCTCTTTTATTAATTCATGCATCAATTATACCTAACAAGTAAGTGAATGTCCTAGTATTGGTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTCCAGTCCCCTATTTTTTACCTTAGTGATCTGTTTGAGTTAGTATTCATTTGCCTTTACTCATTTTCTGTTACTATCTCTTTATTTTTAAATTTGTAATTCAATTATACCTAACAAGTTAGTGAATGTCCGTTTTGGATCCCTTTTAGATGTAAGCTGTTTGATCATTGCTCATTTTCCTTTACTCATTTTCTTTTTCTCTCTCTTCTTTGTTTGTACATCAATTAGACCTAACAAGAAAATGAATGTCCCTTTTTGGTCACTTTTCGATGTAAGCTGTTTGAGTCATTTTTCTTTTTCCATTTCCTATTTCTATTCTTTTTTATTTGTACATCAATTAGACCTAACAGTGAATGTTCCTTTTGGGTCCCATTTAGATCTAAGTGGTGTGTTAATGCTTTTATTTGAGATTCTGATATTGCAATATATCAATCTCTAATCAAAGCTAAGATTTTGATTCCTTCTATACTAGCACGACCTAAAAAGTAGCGTGTTTTATTTTTCTTCCAATTATTCAGTCGGTGTGTAGATGTTGTTCAGATGGGTCAATTGTATCTTGCTAACAACTTTAGTTTTTCAGCTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGGGTAAGTTCTGATGCAAGTAGAGAATTGTACATGTATGATGTCCTTTCAATATGCTATATCTATACTAATTATTCTGCTTTAAGCTTCTTAATGCTCCATTAATCGTCTGATAAACTCTTCAAACAAAGCTCGGAAAAACTATTCATGCAAGTTTGTGTATCAGAACTACCATTCTCATTTGCTCGGTAGTTATCATCATTACACATTATTTCTGCAAGCCACTTTCTTGATACATGCTAATAAATACTTTTGAGTCCAGACACGACTATTATTTTGAAATAAAGGCAACTATTCTGGTCTTTATCGATGCTTTTGTTGGCCAAACAAATTGAAACTTTCTGCATTTCTGCTTGATCTCAGTTAGTATTAATGTATTGACTTACTTCTTTGATAAGTCATCATCAGTTTTCTGACTTATTAAATATATGTTGCTTATTTCTTTTTTACCTTGGTCGTACATAATAAACATCACCAAGTTGTTTAGGACCTTAGGTTTCATTTGATCTCTTTCAGGGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAGGTACTAATCTTTTTCTTTCTCCCTTATTCTGTTGTTTGACCATGTAGAGAATTGACATTTCACTGTCTATTTTTATTCACTTAATGGATTTTAGCACAAATATTTGATGTTGACATGTGTGGGTGCTTGCAGATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAGGTAATTTGTCTCTATGTATTCCCCTCTCAAGAGTTTATTTGAGCTCATCCTACTTTAGTTCAATTAAAATCTCAATTTGCAAGTCAAAAGAACACCTTTGCCTCAAAAGTCCCTCTAGGTTGAAATGTAGCTCTTCATCAAAATCACTGCAGAGTTTTCGGTGTGTATAGATCTTGTATATCTGTGATTTGTCGGCACTGTTGTTAAAGGCGTGCTGAAGCGAGGCTCAATACTTGTTGAGCGATTCGCCTCGCCTCGCCTCAATGTCGTCATCAAGGTTCTACGACATGCTTTTCCTTGCGAATGAGCCTCTTCCGAAGAGGCGAGACAGTTGGCATTTCACTTTATCGTAATCTTTTTGTTCATATATTTGTCATTCATGCTATAACTATTAGTCTTGGACTATATATATATATATATATATTGTTTCTCCCTTTGTGCTTTTTCTTCATTAAAGTTTATGCTTTATTTGAGCTTGAAGTCCCAACGGATCTTAGAGGTTTTTTGCTTTTAATGACACTGTTTATCGGTCAAGTTTAGTATTGACACAACTTGTAGTCCGTTGCTTCATTTAGTATTTTAAAATGATGGGAAATAATGACTTTCTGCTTCAAGGTAGATTTGGAATTTGTTAGATGTTGACTTTGTCAGTAACTTCGATAGATGGTGTTGTGGACATATTTGCACAGATGGCGTGGTGTCCAGTTTCATTGCAAGTCTTGTTTCTTAGCATCTAATATATTTTCAAGTACATAAACTGATTGCAATATGTACAGATATAGTCATAATATTTGCTACTTTTTTGTGACAATTTACGTGGACAAGTCAGTTTTATAGTAACTGGAACTGTGTTATCTATACATTTGTATTCCTGTAGTAGAGAAGGATCTTGTAATAATTTCTTTGTATGACTAATACACTGTTATATCCTATATGAAGTTTCTTTGATGTGAATGGAAATGTTTTATTCAATATCCTCAAATGCACTTCGCTGGTTGCAGATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTGTCTGTGCCTGTGGCCAGATTACTGGTGTTTCCTACTGATTTTGTTTCGTTATTAATAATGCTTAACAGCTTCTAATGAGTCGAT</genome_strand>
        <mrna_strand>ATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG....................................................................................GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACACCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG.....................................................................................GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAG.................................................................................GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCCTGCAGGAAAATAATCTAG....................................................................................................................................ATTTAGTGGTCCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGATGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTGTCTGTGCCTGTGGCCAGATTACTGGTGTTTCCTACTGATTTTGTTTCGTTATTAATAATGCTTAACAGCTTCTAATGAGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0023C09-J59nT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336066" ref_strand="+" ref_description="SGN-U336066        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G42810.1 | Symbol: PAPP5 | Encodes a phytochrome-specific type 5 phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. It localizes in the cytoplasm in darkness and in the nucleus in light. | chr2:17819012-17823739 REVERSE | Aliases: F7D19.19, F7D19_19, PAPP5 (evalue: 0, score=865) genbank/nr: gi|24954813|gb|AAN64317.1| type 5 serine/threonine phosphatase 55 kDa isoform [Lycopersicon esculentum] gi|28141084|gb|AAO26214.1| type 5 protein serine/threonine phosphatase 55 kDa isoform [Lycopersicon esculentum](evalue: 0, score=960)">
      <seq>gtctcagtcttctttgacaaacccccaaagcgccataaaaagagtattcatgaaaattccagtattgtgacttcgcacgcaacatctactcagccagcctccagtcgccattgttatgcccggtatggaagctgagaactcaaacgcctcccgagctgaagaactcaagcaactcgcaaatgaagcattcaaagggcataagtattcgcaagctattgatctgtacacacaagcgattgagttgaacggtgagaatgcggtgtactatgctaaccgtgcgtttgctcacaccaaattggaggaatatggaagcgcaatacaggatggaactagagctattgaaattgaccctagatattcaaagggttattataggagaggagctgcatatttggcaatggggaagttcaaagatgcactcaaggattttcaacaggtcaagaaattatgtccaaacgacccagatgctaccaaaaaattgaaggaatgtgagaaagctgtcatgaagctaaaatttgaagaagctatttctgtcccagaatctcagaggcgttcagtagctgactctattgattatcgttctgtagaggtggagcctcaatatgctggtgcaagaatagagggagatgttgtaacattagattttgtgaagaagatgctggatgacttcaaaaaccagaagaacttgcataagaggtatgcctaccaaatagtactgcaaacaagagaaatgttgcgagcactgccctcccttgttgacattgttgttcccgaagggaagcacttcactgtatgtggtgatgtacatggtcagttttatgacctcctaaatattttcgagctcaatgggcttccatcagaagacaatccgtatctgttcaatggtgattttgttgatagagggtctttctctctagaggtcatattgacattatttgccttcaagtgcatgtgtccatcagctatacacctggcgagaggaaatcacgaaagcaagagcatgaacaaaatatatgggtttgagggcgaggtcagatccaagttaagtgaaatatttgtggaactctttgcagaagtgttctgttgcttacctttggcccatgtcataaatgagaaagtctttgtagtacatggaggtctttttagtgttgatggcgtgaagctctctgatattagagcaattgatcggttttgtgagcccccagaagaggggttaatgtgtgaattgttgtggagtgatccacaacctcagcctggtagaggacctagtaaacgaggtgttggtctttctttcgggggagacgtaactaaaagattcttgcaggaaaataatctagatttagtggtgcgatctcatgaagtgaaggatgaaggttatgagattgagcatgacggcaaactcataacggtgttttccgctcccaattattgtgaccagatgggtaacaagggtgcttttatacgatttgaggctcccgatatgaagccaaatattgtgacattttcagcagtgccacatcctgatgtcaaaccaatggcatatgccaacaacttccttcgcatgttttcttaaaaactctggaacctaacgttcagtattacaatcgatgcgaccttttgtctgactgaccaagagcatacacatcaggaggcaaaagagctagtacttacagccaattagctgcagtgtcattattcggacaacttcctgacttgcccgcagcatgtgaggatcctcacctcctttgttttgattaaggcgtaaacactttctctacgataacaatgtcgtgtggtggattgtcctctgtattatttatattcctctttgtaagattgttacacttctcatttcttttagaatgttcaaattgggaaaagctttgataagtcgaattttggttttttctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0023C09-J59nT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0023C09.1" temp_strand="-" temp_description="C07HBa0023C09.1  AC210349.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0023C09 upload_account_name:france">
        <position start="19170" stop="8750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18870" g_stop="18677" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18676" i_stop="18593" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18592" g_stop="18423" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="364" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18422" i_stop="18338" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18337" g_stop="18266" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="436" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18265" i_stop="17674" i_length="592">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17673" g_stop="17523" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="587" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17522" i_stop="14734" i_length="2789">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14733" g_stop="14625" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="696" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14624" i_stop="14544" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14543" g_stop="14426" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="814" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14425" i_stop="12810" i_length="1616">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12809" g_stop="12662" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="962" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="12661" i_stop="11806" i_length="856">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="11805" g_stop="11557" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="963" r_stop="1211" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="11556" i_stop="11044" i_length="513">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="11043" g_stop="10918" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1212" r_stop="1337" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="10917" i_stop="10786" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="10785" g_stop="10685" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1338" r_stop="1438" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="10684" i_stop="9684" i_length="1001">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="9683" g_stop="9609" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1439" r_stop="1513" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="9608" i_stop="9448" i_length="161">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="9447" g_stop="9051" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1514" r_stop="1910" r_length="397" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1911" polyA_stop="1946"/>
      <MATCH_line gen_id="C07HBa0023C09.1" gen_strand="-" ref_id="SGN-U336066" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1910</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0023C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18870" e_stop="18677"/>
          <exon e_start="18592" e_stop="18423"/>
          <exon e_start="18337" e_stop="18266"/>
          <exon e_start="17673" e_stop="17523"/>
          <exon e_start="14733" e_stop="14625"/>
          <exon e_start="14543" e_stop="14426"/>
          <exon e_start="12809" e_stop="12662"/>
          <exon e_start="11805" e_stop="11557"/>
          <exon e_start="11043" e_stop="10918"/>
          <exon e_start="10785" e_stop="10685"/>
          <exon e_start="9683" e_stop="9609"/>
          <exon e_start="9447" e_stop="9051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCAGTCTTCTTTGACAAACCCCCAAAGCGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAGGTAAATTCAATATACACAAACTTGAGGTTGTATCATGTGGATTTATGAATAATAAGTCTGTTTATGATTTCAATGTGTTTTCAGGGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAGGTAAGTATTTGAATTGTGAAAGAATTGGAATGGAATTGTGGTTTCTTTGTTTCTATTGATGTGTGATTAATTGCTGAGGTTGCAGGGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAGGTTGGTATTGTTTTTTGTAGCTTCTTCACTCATTTCAGCTGCAATTTTTTTATAAGCTTTATCTTAGGTACAACAGAAAATGTTGATGAAAAATCATTGCTTATGTAATTAGCTAACACATTTATTAGAGAAAATGATGACATACCGGTGACATTTCGTTGGGTTAATTAGCCACCTCATAGAAGATTCTTCTCTATGATTCACTTGAAAACATGTCCAAATGATACTTGAGATCTTAGCAGTAACTCGCCCATAAACAATTTAGTGGTTCAACAATGGAAGAGATATCAAGTAATCCTTTTGGACTGTTGTTTTCTTTTAAGAGAGGGCATCAATTTATTATTTTGTCTCAATACTGATTCTTGAAAGTTTTTTCTTGGATTTTTTTGACAAACTATATGGTCTTGTTTCCCAAGTGGTTTTCTTTGGTGTCTCCTCTGCATTATAGGCTCTAAATATGCTGTTTGCATGTATCTTTTGAGTCTGCTTTATAGTTTTCTGCAGAAGATGTCCCCTATCTTCTCTAGTCAGTGTCTGGAATAGTTTACCAATCTGCTAATTCTGGGATGTGTTCCTTTATTGTCTCACTCAGGTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAGGTAAGATAGCTCCAAGCTGATATTTCTTCCTTATATTATGCTCACGGAAGGTACCTTGGTCATAGAGTAAATTTCTTTGCAAAGCATGGCTTTGCACTATGTTTTCTTGTCTCATCTATGCGTATAGTTGCTGGATAAATTTCTTGCATTACATGTCATGGCATTTCATAAGGTGCAGGACATGGTTACTACAATGGAAAAATGCTTCTTTCCCTTTCCTTTCTTAATTTACTGCTGCTTGTTGCCATACACGTTTGATTCGTTAATTGAGGGATGAGAATTTCTCAATATCCTTGAAATGTTGAATTTACTGCCATGAGATTTACTTATTTGTAGAGGTTTGCACCTCTTTTGTGAAGTTTGATGCATCAGTAGTTTAGGTCTCACTTCTCAGTCTGATAGGTACTGGTTAGATGGTTTTTGTTGAAAAGTTTGAGAATGTGCGGGGGCATCAGTTTCGCCTGGGATAGATGGTAGAAAATGTTGACTTGTCCATGTGGAACTTTTCTTTTCTCTTCCCAACCTCTTCAAATGCTCTGAAGTAACCATAACAAGATAAAGAATAAATCCCTTTGATCTTTTCGACATTATCGTTTGGTTGCGAAGATGATATGTTGTTTGTTTACTATGTGCAAGTAAATAAAACATTACAAGATGTTGTTCACGAACTACTTCCAATCACTTAGTTCAAATTTAGCCATTACTTACACTTCGTGTCCCTTTCAGGAAACGCTGTAAACCTCTAACTCAAATTTTGGCAATTACTATAGTAGATTTTTAGTTAAATGACCCCCTGAATTGAACATGGGTTTGTCCTTTAGATTATTCAACAATAAACCTTCATTTGAAATAACAAGACAAAATAAGAATCTCTAAGCTTAGTCAACTTTCAACCTTTCATGTTAGTCCATATAATTTTCATTCTTATAAAAGTAAATTTTAATAGTAAAATTTACCTATTTCATCCTTATAGGATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAGGTTTGAGCCTTTATAAGAAAAATGTTGAACTAGTAGACACTCAAGTTAGTGGTAGTTCGCGAAATGGACATCCATCATAATCGGAATAGTTGAATAAGGATTAGTTGTAACCTAGAGCAAATGCTCGTATTTTATTTACATTCCATTGCGTTGCATTTGATTGAAAATTGTTCCTGTTCAATTGATATGTCCTATGTATGAAATTACTAGGAGCATGGTGTTCCAACTAAAGCCATTTTCGACCCTCTATATAGTATATTCAGCATTCTTAGTAGTTATTTGCTTCTTTTGGCCTTCTCTGAGGACCATATGAGTATGGTGTGAACTCTTCAGAAAATAGATCTCTAAAATCAGTCACAGGTTTAAGTGTTTTGCCTAGAGTACCACGTCATCCTTTGCTTTCTAACCATTAAAGTTTCTAATAAGTTAGTACTTATATTACTCAGAGCGACTTATAGATTCTTGCCCCATTATTTACGTGATACATCTCAATTCTTGGCACATCTGCTATTGTATTTTATGGGGAAGATTCTCTTTGGTAAGTAAGACAGTAGCGTTTTGCTCTGTGGGTCTCCTTTTAAACTTCAGGCTTAGAGTTCTTAGCTGCCCCTTGCTGAAGACATTCATCCCTTGCCTTATGCTTTTCGGGGTTGTTTGGTTTAGAGACAAAATTTTCAGGGGTTAGTAATGTAAGGATTAAGTAACAAAGAGATTAATAATCCAAGAATTTTTTCTTCTTGTATGTTTAGTTTGATATTTTTCCAAATAGTGTAAAATGTATATCATGAAATATGTTTTTACTTCTTAAAACCAAAAAAAAAAAATAGCTTATTTGTTATTATGATGTCGTTTTAATGTTTTTAGTCCATGGATTACTAATCCCCACATTCTTATTCCACATCATATCTGGTATAAAATAATTCATAGATTCCCGCATAACTTGTGTCTTATGCAAATATTATTTATGAGAAAAACATAAGTAGCAAAAAAGTTTATGCCAAAAACATAAGTAGCAACCAAGCATTGTCTAAATTAATGCTGGATTTTATGCAAAGGTTAAATTTCTTGACAGTAATTAGGGATTCAATCAGTTTCAAAAAAATTAGGGATTCAATCAGGATCTTATTCTGTAATTATACACTTACCAAAATCATTTACGTTGTAATTGCTATAAATTCCCATTTCAAACTATCCCTTGCTGTGTTAGCTTTATGTATGCACTATGCAGTAATTGCTAGTTTGCTGGTTCTATTTTGCCTTTCTTACCTTTAAATTTGGAGACTCTTTTAGGATGATTGGGCATGTGGCTGTCTGCATGTCTTGATCCTTGTCATTCTGACTCTTCCTTGCTTTTATGTGTCAGTACTGTTTTACATATCATATTGAGAAATCTGAGAGTTTGCGTGACATTTTTTTTGTACCCCATGATTTGTGTCTCTAACATAGTAAGACCACCTCTTGGTGTCAAGACTGTGCTGGGGAACTTGCATTCAGTGGTTTAATCTTTATTAATACTCTCTACTTCATCTAATCCAGTTAATGAGAAATCTGCTCGCTTTGTTTCACCTGAATTTACATGCCAGTTTGGTTCTTTAAATTGTAGAGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAGGTATGTTTCGTTTGAATGGTGTAATCTTCTCTTTATTTTTGAAACACTCTTAATCTTTCAACATTTGCTCTATTTTGACAGGTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAGGTAATGATATCCTGATGACGGATGCCTTTTTATAGCTTGTAGCTGTTATTTTTATCATTTGCTTGTCCTTTTTTTTCTCCTCCAGTTTCATTTCACCCCTCTAGAACAAGATTTTACGTCAGCATATGGTATTGACTAAGGCATGCATTTATAGAAGGCGTAGAACTATCTGGTGCTTGCTAGTGATGCTCCTACATGCAAGAATAACTAAAACAAAAAATTCTTGTTTCTTTAAAAAATTGCTGCTTGGTTCACTGATCTATTTGGAGAAACATAAAGGTTGATTCCTTTTGTCAGAAAAAAAGAGGGATGTTAGTGGCTTTTAGACGTCTTTAACCTGTAAGCAATTTGAAGGCGCTGGAACCTTTTTAAAGATCGTGGGCATGTTCCCTTTGTCGTATTTCTCCTTTTCGCCCCTCCCTAATTAAAGAATATGGTTCCTTTTGAGCTGAAATATTACTGCTATGCCATTTAGTTCGTAAGGCCTATCATACATATCTGAACCGCAGGCCCTTCCTCTTGTACTTCTCTTCCCACTTGTGAAACATCTCAGTCCCCTTCTTCACTGGAATCTGAGTTTGGATTTGTCTGATGATGCACTCGCCCACCATAAGCCTTTTCTCCCTACTTTAGGAAGCATTTTCACCTTCCCTTTAACCAGACTAGGACCTTCATATTTGGAATGCACTTTTTTTCCATTCAAGAGGAATGGTATAAAATAAAAGCTCTTGAACTTTATTGCGTTAGGAGCTGTGAAGGTCTGAAGGAGTCTGTATTTAGACTCTAAGTATCATGAACCTCCTATCCAGCTTCAATCTTGTGTCTTCTTCAACTTCGATTAACACTGGCCTGTTTCCAGAAATCCTCAGAAGCTCTGGCTCAGAACTGAACTGGCAAGGCAACCAGTCTAATCCAGACTGTATCCAACACCAACCCTGAGTGTCTGCCCGACCAGTGAGTTACTCCATACTTTTGAAACACCATCTTTGCTTGGTCTGATGGCCCGCGCCTCCTTCTGAGAGGAATTTAAGAAACCCCTCTACCTTTGAACGGTTGACAACCATGTGGATTAACCCACTTCTAGACCAATTTGATCTTCGGTTGTTTTAGGCTCTTCCCCAATCAATGTACCAAAAACCTCTATATAAAGTGTTAGCTTTTTCTCACGATACGCCCTCAACCTCCATCTCTTGCTATCCCTTGCTTTCTTTATCGGAGTTGCCAGCGGTTGTTAATATGACCAATTTGAGCAGAGTTTTGGATAACCCCTTTTACATGTACCCAAGTTTTATGAATGGAATTTTGACTTGCTTCTGTCATTGTCAAGCTAACTGGAGAACTCTTGACCAGAAAAATACGAAAGGGTAAGATTTAGTAAAGTAATTGTTTTTTCTGGTTTAATTAAGGAGCAAATCCTAAAGAACACTTGTTTGACTTTAGATATGTGCTGCAAGATATATCATTTAGTCCTTTATTCTCTCTTTCCTGCTGTTTATATATAGTGATAATACAATTTGCTGGTTCTATTTCTGTGCTTGGCGGAATGACTTGCTTCTTTTTGCCAGCTATAAGTCTCTACTGGCTGAACTGTTGTTCATCTTCTAATGTTGCTACAGTTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGGTAGATCGCCTGCTCTTTTCATCTTCAATGTTGCAAGTGTGTTCTTTTATATTATTACTCCTACCTAGTATTCTTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTTTTCCAGTACCCTATTTTTTACCTTAGTTATCTGTTTGTGTTAGTATTTATTTGCCTTTACTCATTCTAGTTCTATCTCTTTTATTAATTCATGCATCAATTATACCTAACAAGTAAGTGAATGTCCTAGTATTGGTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTCCAGTCCCCTATTTTTTACCTTAGTGATCTGTTTGAGTTAGTATTCATTTGCCTTTACTCATTTTCTGTTACTATCTCTTTATTTTTAAATTTGTAATTCAATTATACCTAACAAGTTAGTGAATGTCCGTTTTGGATCCCTTTTAGATGTAAGCTGTTTGATCATTGCTCATTTTCCTTTACTCATTTTCTTTTTCTCTCTCTTCTTTGTTTGTACATCAATTAGACCTAACAAGAAAATGAATGTCCCTTTTTGGTCACTTTTCGATGTAAGCTGTTTGAGTCATTTTTCTTTTTCCATTTCCTATTTCTATTCTTTTTTATTTGTACATCAATTAGACCTAACAGTGAATGTTCCTTTTGGGTCCCATTTAGATCTAAGTGGTGTGTTAATGCTTTTATTTGAGATTCTGATATTGCAATATATCAATCTCTAATCAAAGCTAAGATTTTGATTCCTTCTATACTAGCACGACCTAAAAAGTAGCGTGTTTTATTTTTCTTCCAATTATTCAGTCGGTGTGTAGATGTTGTTCAGATGGGTCAATTGTATCTTGCTAACAACTTTAGTTTTTCAGCTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGGGTAAGTTCTGATGCAAGTAGAGAATTGTACATGTATGATGTCCTTTCAATATGCTATATCTATACTAATTATTCTGCTTTAAGCTTCTTAATGCTCCATTAATCGTCTGATAAACTCTTCAAACAAAGCTCGGAAAAACTATTCATGCAAGTTTGTGTATCAGAACTACCATTCTCATTTGCTCGGTAGTTATCATCATTACACATTATTTCTGCAAGCCACTTTCTTGATACATGCTAATAAATACTTTTGAGTCCAGACACGACTATTATTTTGAAATAAAGGCAACTATTCTGGTCTTTATCGATGCTTTTGTTGGCCAAACAAATTGAAACTTTCTGCATTTCTGCTTGATCTCAGTTAGTATTAATGTATTGACTTACTTCTTTGATAAGTCATCATCAGTTTTCTGACTTATTAAATATATGTTGCTTATTTCTTTTTTACCTTGGTCGTACATAATAAACATCACCAAGTTGTTTAGGACCTTAGGTTTCATTTGATCTCTTTCAGGGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAGGTACTAATCTTTTTCTTTCTCCCTTATTCTGTTGTTTGACCATGTAGAGAATTGACATTTCACTGTCTATTTTTATTCACTTAATGGATTTTAGCACAAATATTTGATGTTGACATGTGTGGGTGCTTGCAGATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAGGTAATTTGTCTCTATGTATTCCCCTCTCAAGAGTTTATTTGAGCTCATCCTACTTTAGTTCAATTAAAATCTCAATTTGCAAGTCAAAAGAACACCTTTGCCTCAAAAGTCCCTCTAGGTTGAAATGTAGCTCTTCATCAAAATCACTGCAGAGTTTTCGGTGTGTATAGATCTTGTATATCTGTGATTTGTCGGCACTGTTGTTAAAGGCGTGCTGAAGCGAGGCTCAATACTTGTTGAGCGATTCGCCTCGCCTCGCCTCAATGTCGTCATCAAGGTTCTACGACATGCTTTTCCTTGCGAATGAGCCTCTTCCGAAGAGGCGAGACAGTTGGCATTTCACTTTATCGTAATCTTTTTGTTCATATATTTGTCATTCATGCTATAACTATTAGTCTTGGACTATATATATATATATATATATTGTTTCTCCCTTTGTGCTTTTTCTTCATTAAAGTTTATGCTTTATTTGAGCTTGAAGTCCCAACGGATCTTAGAGGTTTTTTGCTTTTAATGACACTGTTTATCGGTCAAGTTTAGTATTGACACAACTTGTAGTCCGTTGCTTCATTTAGTATTTTAAAATGATGGGAAATAATGACTTTCTGCTTCAAGGTAGATTTGGAATTTGTTAGATGTTGACTTTGTCAGTAACTTCGATAGATGGTGTTGTGGACATATTTGCACAGATGGCGTGGTGTCCAGTTTCATTGCAAGTCTTGTTTCTTAGCATCTAATATATTTTCAAGTACATAAACTGATTGCAATATGTACAGATATAGTCATAATATTTGCTACTTTTTTGTGACAATTTACGTGGACAAGTCAGTTTTATAGTAACTGGAACTGTGTTATCTATACATTTGTATTCCTGTAGTAGAGAAGGATCTTGTAATAATTTCTTTGTATGACTAATACACTGTTATATCCTATATGAAGTTTCTTTGATGTGAATGGAAATGTTTTATTCAATATCCTCAAATGCACTTCGCTGGTTGCAGATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTGGTTAGTGACTTTTATCTTGAAATGACCTTTTACTCCTTGATAATTAACACTTTTATTCTCATCTCCTTTAATGGGTTGCCTCATGAGTTGTTTTTACCATGTTATCATCATAACACTGTAGATTAACTCTTGTCATCTTCATTGCGTTGCCTCGTATGCAGCCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCT</genome_strand>
        <mrna_strand>GTCTCAGTCTTCTTTGACAAACCCCCAAAGCGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG....................................................................................GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACACCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG.....................................................................................GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAG.................................................................................GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAG....................................................................................................................................ATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG.................................................................................................................................................................CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0023C09-J59nT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317379" ref_strand="+" ref_description="SGN-U317379        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT2G42810.1 | Symbol: PAPP5 | Encodes a phytochrome-specific type 5 phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. It localizes in the cytoplasm in darkness and in the nucleus in light. | chr2:17819012-17823739 REVERSE | Aliases: F7D19.19, F7D19_19, PAPP5 (evalue: 2e-134, score=474) genbank/nr: gi|24954813|gb|AAN64317.1| type 5 serine/threonine phosphatase 55 kDa isoform [Lycopersicon esculentum] gi|28141084|gb|AAO26214.1| type 5 protein serine/threonine phosphatase 55 kDa isoform [Lycopersicon esculentum](evalue: 1e-155, score=551)">
      <seq>cgccataaaaagagtattcatgaaaattccagtattgtgacttcgcacgcaacatctactcagccagcctccagtcgccattgttatgcccggtatggaagctgagaactcaaacgcctcccgagctgaagaactcaagcaactcgcaaatgaagcattcaaagggcataagtattcgcaagctattgatctgtacacacaagcgattgagttgaacggtgagaatgcggtgtactatgctaaccgtgcgtttgctcactccaaattggaggaatatggaagcgcaatacaggatggaactagagctattgaaattgaccctagatattcaaagggttattataggagaggagctgcatatttggcaatggggaagttcaaagatgcactcaaggattttcaacaggtcaagaaattatgtccaaacgacccagatgctaccaaaaaattgaaggaatgtgagaaagctgtcatgaagctaaaatttgaagaagctatttctgtcccagaatctcagaggcgttcagtagctgactctattgattatcgttctgtagaggtggagcctcaatatgctggtgcaagaatagagggagatgttgtaacattagattttgtgaagaagatgctggatgacttcaaaaaccagaagaacttgcataagaggtatgcctaccaaatagtactgcaaacaagagaaatgttgcgagcactgccctcccttgttgacattgttgttcccgaagggaagcacttcactgtatgtggtgatgtacatggtcagttttatgacctcctaaatattttcgagctcaatgggcttccatcagaagacaatccggatctgttcaatggtgattttgttgatagagggtctttctctctagaggtcatattgacgttatttgccttcaagtgcatgtgtccatcagctatacacctggcgagaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0023C09-J59nT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0023C09.1" temp_strand="-" temp_description="C07HBa0023C09.1  AC210349.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0023C09 upload_account_name:france">
        <position start="19140" stop="11484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18840" g_stop="18677" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18676" i_stop="18593" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18592" g_stop="18423" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="334" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18422" i_stop="18338" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18337" g_stop="18266" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="406" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18265" i_stop="17674" i_length="592">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17673" g_stop="17523" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="557" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17522" i_stop="14734" i_length="2789">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14733" g_stop="14625" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="666" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14624" i_stop="14544" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14543" g_stop="14426" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="784" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14425" i_stop="12810" i_length="1616">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12809" g_stop="12662" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="932" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="12661" i_stop="11806" i_length="856">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="11805" g_stop="11784" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="933" r_stop="954" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0023C09.1" gen_strand="-" ref_id="SGN-U317379" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>954</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0023C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18840" e_stop="18677"/>
          <exon e_start="18592" e_stop="18423"/>
          <exon e_start="18337" e_stop="18266"/>
          <exon e_start="17673" e_stop="17523"/>
          <exon e_start="14733" e_stop="14625"/>
          <exon e_start="14543" e_stop="14426"/>
          <exon e_start="12809" e_stop="12662"/>
          <exon e_start="11805" e_stop="11784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAGGTAAATTCAATATACACAAACTTGAGGTTGTATCATGTGGATTTATGAATAATAAGTCTGTTTATGATTTCAATGTGTTTTCAGGGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAGGTAAGTATTTGAATTGTGAAAGAATTGGAATGGAATTGTGGTTTCTTTGTTTCTATTGATGTGTGATTAATTGCTGAGGTTGCAGGGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAGGTTGGTATTGTTTTTTGTAGCTTCTTCACTCATTTCAGCTGCAATTTTTTTATAAGCTTTATCTTAGGTACAACAGAAAATGTTGATGAAAAATCATTGCTTATGTAATTAGCTAACACATTTATTAGAGAAAATGATGACATACCGGTGACATTTCGTTGGGTTAATTAGCCACCTCATAGAAGATTCTTCTCTATGATTCACTTGAAAACATGTCCAAATGATACTTGAGATCTTAGCAGTAACTCGCCCATAAACAATTTAGTGGTTCAACAATGGAAGAGATATCAAGTAATCCTTTTGGACTGTTGTTTTCTTTTAAGAGAGGGCATCAATTTATTATTTTGTCTCAATACTGATTCTTGAAAGTTTTTTCTTGGATTTTTTTGACAAACTATATGGTCTTGTTTCCCAAGTGGTTTTCTTTGGTGTCTCCTCTGCATTATAGGCTCTAAATATGCTGTTTGCATGTATCTTTTGAGTCTGCTTTATAGTTTTCTGCAGAAGATGTCCCCTATCTTCTCTAGTCAGTGTCTGGAATAGTTTACCAATCTGCTAATTCTGGGATGTGTTCCTTTATTGTCTCACTCAGGTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAGGTAAGATAGCTCCAAGCTGATATTTCTTCCTTATATTATGCTCACGGAAGGTACCTTGGTCATAGAGTAAATTTCTTTGCAAAGCATGGCTTTGCACTATGTTTTCTTGTCTCATCTATGCGTATAGTTGCTGGATAAATTTCTTGCATTACATGTCATGGCATTTCATAAGGTGCAGGACATGGTTACTACAATGGAAAAATGCTTCTTTCCCTTTCCTTTCTTAATTTACTGCTGCTTGTTGCCATACACGTTTGATTCGTTAATTGAGGGATGAGAATTTCTCAATATCCTTGAAATGTTGAATTTACTGCCATGAGATTTACTTATTTGTAGAGGTTTGCACCTCTTTTGTGAAGTTTGATGCATCAGTAGTTTAGGTCTCACTTCTCAGTCTGATAGGTACTGGTTAGATGGTTTTTGTTGAAAAGTTTGAGAATGTGCGGGGGCATCAGTTTCGCCTGGGATAGATGGTAGAAAATGTTGACTTGTCCATGTGGAACTTTTCTTTTCTCTTCCCAACCTCTTCAAATGCTCTGAAGTAACCATAACAAGATAAAGAATAAATCCCTTTGATCTTTTCGACATTATCGTTTGGTTGCGAAGATGATATGTTGTTTGTTTACTATGTGCAAGTAAATAAAACATTACAAGATGTTGTTCACGAACTACTTCCAATCACTTAGTTCAAATTTAGCCATTACTTACACTTCGTGTCCCTTTCAGGAAACGCTGTAAACCTCTAACTCAAATTTTGGCAATTACTATAGTAGATTTTTAGTTAAATGACCCCCTGAATTGAACATGGGTTTGTCCTTTAGATTATTCAACAATAAACCTTCATTTGAAATAACAAGACAAAATAAGAATCTCTAAGCTTAGTCAACTTTCAACCTTTCATGTTAGTCCATATAATTTTCATTCTTATAAAAGTAAATTTTAATAGTAAAATTTACCTATTTCATCCTTATAGGATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAGGTTTGAGCCTTTATAAGAAAAATGTTGAACTAGTAGACACTCAAGTTAGTGGTAGTTCGCGAAATGGACATCCATCATAATCGGAATAGTTGAATAAGGATTAGTTGTAACCTAGAGCAAATGCTCGTATTTTATTTACATTCCATTGCGTTGCATTTGATTGAAAATTGTTCCTGTTCAATTGATATGTCCTATGTATGAAATTACTAGGAGCATGGTGTTCCAACTAAAGCCATTTTCGACCCTCTATATAGTATATTCAGCATTCTTAGTAGTTATTTGCTTCTTTTGGCCTTCTCTGAGGACCATATGAGTATGGTGTGAACTCTTCAGAAAATAGATCTCTAAAATCAGTCACAGGTTTAAGTGTTTTGCCTAGAGTACCACGTCATCCTTTGCTTTCTAACCATTAAAGTTTCTAATAAGTTAGTACTTATATTACTCAGAGCGACTTATAGATTCTTGCCCCATTATTTACGTGATACATCTCAATTCTTGGCACATCTGCTATTGTATTTTATGGGGAAGATTCTCTTTGGTAAGTAAGACAGTAGCGTTTTGCTCTGTGGGTCTCCTTTTAAACTTCAGGCTTAGAGTTCTTAGCTGCCCCTTGCTGAAGACATTCATCCCTTGCCTTATGCTTTTCGGGGTTGTTTGGTTTAGAGACAAAATTTTCAGGGGTTAGTAATGTAAGGATTAAGTAACAAAGAGATTAATAATCCAAGAATTTTTTCTTCTTGTATGTTTAGTTTGATATTTTTCCAAATAGTGTAAAATGTATATCATGAAATATGTTTTTACTTCTTAAAACCAAAAAAAAAAAATAGCTTATTTGTTATTATGATGTCGTTTTAATGTTTTTAGTCCATGGATTACTAATCCCCACATTCTTATTCCACATCATATCTGGTATAAAATAATTCATAGATTCCCGCATAACTTGTGTCTTATGCAAATATTATTTATGAGAAAAACATAAGTAGCAAAAAAGTTTATGCCAAAAACATAAGTAGCAACCAAGCATTGTCTAAATTAATGCTGGATTTTATGCAAAGGTTAAATTTCTTGACAGTAATTAGGGATTCAATCAGTTTCAAAAAAATTAGGGATTCAATCAGGATCTTATTCTGTAATTATACACTTACCAAAATCATTTACGTTGTAATTGCTATAAATTCCCATTTCAAACTATCCCTTGCTGTGTTAGCTTTATGTATGCACTATGCAGTAATTGCTAGTTTGCTGGTTCTATTTTGCCTTTCTTACCTTTAAATTTGGAGACTCTTTTAGGATGATTGGGCATGTGGCTGTCTGCATGTCTTGATCCTTGTCATTCTGACTCTTCCTTGCTTTTATGTGTCAGTACTGTTTTACATATCATATTGAGAAATCTGAGAGTTTGCGTGACATTTTTTTTGTACCCCATGATTTGTGTCTCTAACATAGTAAGACCACCTCTTGGTGTCAAGACTGTGCTGGGGAACTTGCATTCAGTGGTTTAATCTTTATTAATACTCTCTACTTCATCTAATCCAGTTAATGAGAAATCTGCTCGCTTTGTTTCACCTGAATTTACATGCCAGTTTGGTTCTTTAAATTGTAGAGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAGGTATGTTTCGTTTGAATGGTGTAATCTTCTCTTTATTTTTGAAACACTCTTAATCTTTCAACATTTGCTCTATTTTGACAGGTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAGGTAATGATATCCTGATGACGGATGCCTTTTTATAGCTTGTAGCTGTTATTTTTATCATTTGCTTGTCCTTTTTTTTCTCCTCCAGTTTCATTTCACCCCTCTAGAACAAGATTTTACGTCAGCATATGGTATTGACTAAGGCATGCATTTATAGAAGGCGTAGAACTATCTGGTGCTTGCTAGTGATGCTCCTACATGCAAGAATAACTAAAACAAAAAATTCTTGTTTCTTTAAAAAATTGCTGCTTGGTTCACTGATCTATTTGGAGAAACATAAAGGTTGATTCCTTTTGTCAGAAAAAAAGAGGGATGTTAGTGGCTTTTAGACGTCTTTAACCTGTAAGCAATTTGAAGGCGCTGGAACCTTTTTAAAGATCGTGGGCATGTTCCCTTTGTCGTATTTCTCCTTTTCGCCCCTCCCTAATTAAAGAATATGGTTCCTTTTGAGCTGAAATATTACTGCTATGCCATTTAGTTCGTAAGGCCTATCATACATATCTGAACCGCAGGCCCTTCCTCTTGTACTTCTCTTCCCACTTGTGAAACATCTCAGTCCCCTTCTTCACTGGAATCTGAGTTTGGATTTGTCTGATGATGCACTCGCCCACCATAAGCCTTTTCTCCCTACTTTAGGAAGCATTTTCACCTTCCCTTTAACCAGACTAGGACCTTCATATTTGGAATGCACTTTTTTTCCATTCAAGAGGAATGGTATAAAATAAAAGCTCTTGAACTTTATTGCGTTAGGAGCTGTGAAGGTCTGAAGGAGTCTGTATTTAGACTCTAAGTATCATGAACCTCCTATCCAGCTTCAATCTTGTGTCTTCTTCAACTTCGATTAACACTGGCCTGTTTCCAGAAATCCTCAGAAGCTCTGGCTCAGAACTGAACTGGCAAGGCAACCAGTCTAATCCAGACTGTATCCAACACCAACCCTGAGTGTCTGCCCGACCAGTGAGTTACTCCATACTTTTGAAACACCATCTTTGCTTGGTCTGATGGCCCGCGCCTCCTTCTGAGAGGAATTTAAGAAACCCCTCTACCTTTGAACGGTTGACAACCATGTGGATTAACCCACTTCTAGACCAATTTGATCTTCGGTTGTTTTAGGCTCTTCCCCAATCAATGTACCAAAAACCTCTATATAAAGTGTTAGCTTTTTCTCACGATACGCCCTCAACCTCCATCTCTTGCTATCCCTTGCTTTCTTTATCGGAGTTGCCAGCGGTTGTTAATATGACCAATTTGAGCAGAGTTTTGGATAACCCCTTTTACATGTACCCAAGTTTTATGAATGGAATTTTGACTTGCTTCTGTCATTGTCAAGCTAACTGGAGAACTCTTGACCAGAAAAATACGAAAGGGTAAGATTTAGTAAAGTAATTGTTTTTTCTGGTTTAATTAAGGAGCAAATCCTAAAGAACACTTGTTTGACTTTAGATATGTGCTGCAAGATATATCATTTAGTCCTTTATTCTCTCTTTCCTGCTGTTTATATATAGTGATAATACAATTTGCTGGTTCTATTTCTGTGCTTGGCGGAATGACTTGCTTCTTTTTGCCAGCTATAAGTCTCTACTGGCTGAACTGTTGTTCATCTTCTAATGTTGCTACAGTTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAGGTAGATCGCCTGCTCTTTTCATCTTCAATGTTGCAAGTGTGTTCTTTTATATTATTACTCCTACCTAGTATTCTTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTTTTCCAGTACCCTATTTTTTACCTTAGTTATCTGTTTGTGTTAGTATTTATTTGCCTTTACTCATTCTAGTTCTATCTCTTTTATTAATTCATGCATCAATTATACCTAACAAGTAAGTGAATGTCCTAGTATTGGTTGGGTGGAACTTGAAGGTTTTCTGGATGCAAGTCCAGTCCCCTATTTTTTACCTTAGTGATCTGTTTGAGTTAGTATTCATTTGCCTTTACTCATTTTCTGTTACTATCTCTTTATTTTTAAATTTGTAATTCAATTATACCTAACAAGTTAGTGAATGTCCGTTTTGGATCCCTTTTAGATGTAAGCTGTTTGATCATTGCTCATTTTCCTTTACTCATTTTCTTTTTCTCTCTCTTCTTTGTTTGTACATCAATTAGACCTAACAAGAAAATGAATGTCCCTTTTTGGTCACTTTTCGATGTAAGCTGTTTGAGTCATTTTTCTTTTTCCATTTCCTATTTCTATTCTTTTTTATTTGTACATCAATTAGACCTAACAGTGAATGTTCCTTTTGGGTCCCATTTAGATCTAAGTGGTGTGTTAATGCTTTTATTTGAGATTCTGATATTGCAATATATCAATCTCTAATCAAAGCTAAGATTTTGATTCCTTCTATACTAGCACGACCTAAAAAGTAGCGTGTTTTATTTTTCTTCCAATTATTCAGTCGGTGTGTAGATGTTGTTCAGATGGGTCAATTGTATCTTGCTAACAACTTTAGTTTTTCAGCTATACACCTGGCGAGAGGAAA</genome_strand>
        <mrna_strand>CGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG....................................................................................GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG.....................................................................................GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAG.................................................................................GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGGATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACGTTATTTGCCTTCAAGTGCATGTGTCCATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACACCTGGCGAGAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0023C09-J59nT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331654" ref_strand="+" ref_description="SGN-U331654        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ggttattctttttttaatcaatgacctcttatagctgcacgaaagcaaaaaaatgaaaaataaaataaaaggaagcttggaggaaagaatacccgcaaatgtctttgttttattaatttatagctacatgaagagaaaaaagtatttataagctagtagaagaagtacaaacaaatacatattcaggtttggcctttaaaccctctgttatgggaggaactttggaacaaaaagtgaagaaaattcctgtaacattccttccatagtctctctgggaaattgattatcaacacttgcctatctgttcattatagtctctctgggatattgattatcaacacttgcctatctgttcattcttactgccatgtttattattgtaacaaatgaggaatgttgtgtttgtactgttttaaactatatatgaaaacaaaaggatagtctcgtgcgctaacctctcgttacttaggggtccagggaagggctggaaccatattgggtatatgtacacaatcttactacttggcatttcagtaagaagttgtttccacagcttgaaacaatgactttgtggttgcagtacaccacttatcattgtgccaagcccaccttctattaaatcatctttgaatgaacgcaaaaatatattttgacttcaatcagtgcccaatgtagtcaacttggcattcttcacaagtttttgtacagtgtgtgagcttcatgaccactttctcagcttctaattgtgttacttgcaggcatgggcacttaatttttttcagaaactgaaggccgtcttgaagtttgatcattcaattcaaagagtcactggtctcgccccaccttctgatgagatgtgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0023C09-J59nT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0023C09.1" temp_strand="+" temp_description="C07HBa0023C09.1  AC210349.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0023C09 upload_account_name:france">
        <position start="29067" stop="30530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29367" g_stop="30230" g_length="864"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="863" r_length="863" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0023C09.1" gen_strand="+" ref_id="SGN-U331654" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0023C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29367" e_stop="30230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATTCTTTTTTTAATCAATGACCTCTTATAGCTGCACGAAAGCAAAAAAATGAAAAATAAAATAAAAGGAAGCTTGGAGGAAAGAATACCCGCAAATGTCTTTGTTTTATTAATTTATAGCTACATGAAGAGAAAAAAGTATTTATAAGCTAGTAGAAGAAGTACAAACAAATACATATTCAGGTTTGGCCTTTAAACCCTCTGTTATGGGAGGAACTTTGGAACAAAAAGTGAAGAAAATTCCTGTAACATTCCTTCCATAGTCTCTCTGGGAAATTGATTATCAACACTTGCCTATCTGTTCATTATAGTCTCTCTGGGATATTGATTATCAACACTTGCCTATCTGTTCATTCTTACTGCCATGTTTATTATTGTAACAAATGAGGAATGTTGTGTTTGTACTGTTTTAAACTATATATGAAAACAAAAGGATAGTCTCGTGCGCTAACCTCTCGTTACTTAGGGGTCCAGGGAAGGGCTGGAACCATATTGGGTATATGTACACAATCTTACTACTTGGCATTTCAGTAAGAAGTTGTTTCCACAGCTTGAAACAATGACTTTGTGGTTGCAGTACACCACTTATCATTGTGCCAAGCCCACCTTCTATTAAATCATCTTTGAATGAACGCAAAAATATATTTTGACTTCAATCAGTGCCCAATGTAGTCAACTTGGCATTCTTCACAAGTTTTTGTACAGTGTGTGAGCTTCATGACCACTTTCTCAGCTTCTAATTGTGTTACTTGCAGGCATGGGCACTTAATTTTTTTCAGAAACTGAAGGCCGTCTTGAAGTTTGATCATTCAAATTCAAAGAGTCACTGGTCTCGCCCAACCTTCTGATGAGATGTGCTTG</genome_strand>
        <mrna_strand>GGTTATTCTTTTTTTAATCAATGACCTCTTATAGCTGCACGAAAGCAAAAAAATGAAAAATAAAATAAAAGGAAGCTTGGAGGAAAGAATACCCGCAAATGTCTTTGTTTTATTAATTTATAGCTACATGAAGAGAAAAAAGTATTTATAAGCTAGTAGAAGAAGTACAAACAAATACATATTCAGGTTTGGCCTTTAAACCCTCTGTTATGGGAGGAACTTTGGAACAAAAAGTGAAGAAAATTCCTGTAACATTCCTTCCATAGTCTCTCTGGGAAATTGATTATCAACACTTGCCTATCTGTTCATTATAGTCTCTCTGGGATATTGATTATCAACACTTGCCTATCTGTTCATTCTTACTGCCATGTTTATTATTGTAACAAATGAGGAATGTTGTGTTTGTACTGTTTTAAACTATATATGAAAACAAAAGGATAGTCTCGTGCGCTAACCTCTCGTTACTTAGGGGTCCAGGGAAGGGCTGGAACCATATTGGGTATATGTACACAATCTTACTACTTGGCATTTCAGTAAGAAGTTGTTTCCACAGCTTGAAACAATGACTTTGTGGTTGCAGTACACCACTTATCATTGTGCCAAGCCCACCTTCTATTAAATCATCTTTGAATGAACGCAAAAATATATTTTGACTTCAATCAGTGCCCAATGTAGTCAACTTGGCATTCTTCACAAGTTTTTGTACAGTGTGTGAGCTTCATGACCACTTTCTCAGCTTCTAATTGTGTTACTTGCAGGCATGGGCACTTAATTTTTTTCAGAAACTGAAGGCCGTCTTGAAGTTTGATCATTC-AATTCAAAGAGTCACTGGTCTCGCCCCACCTTCTGATGAGATGTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0023C09-J59nT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343787" ref_strand="+" ref_description="SGN-U343787        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>atgatcaacaaaatctcaccccgtatcctgtgctgggaatactgaaaggcatggttgcttgctctcctagtatccaaatcaatcaggccattccaaggcctcaagtttgtcctcctcacttcagtcaccaaattgattcggtgcagcaaaattgtttaggtgcaatcaaacaaagccctttcaccctgtataatcagaaagcaaattttgaggagccttttccaggtggatataaatctttcacaatcagcccatatggacctgtaccaacattaatgcatcattactccagccagaatgggggctcgagctctcttgatctgaacagctcaagctgtgccatcaactttccttactcacgtctagattccggaaggaacttccgatcatcgtggtctcagttctctacagaaagcaccccatggttttcagatgcaaaacaaaagaaactactaatggattttcatgaattatattcttcatctgacaggaaacatcattactgcagcagcattactggggatagccgtcaaactgacccttcactatatcttgcatcagagcgcttctgttctttcactcagcgccctcaacatgcattggggaatccagtctctctaccatctttagctaacaatgtccctatgccactccaaataggttccagagtaaacactggctcatataaaagaaatggtgacgtgaccaaaatcatatctactccttgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0023C09-J59nT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0023C09.1" temp_strand="+" temp_description="C07HBa0023C09.1  AC210349.1 htgs_phase:3 submitted_to_sgn_as:C07HBa0023C09 upload_account_name:france">
        <position start="53152" stop="54482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53452" g_stop="54182" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0023C09.1" gen_strand="+" ref_id="SGN-U343787" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0023C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53452" e_stop="54182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATCAACAAAATCTCACCGTGCATCCTGTGCTGGGAATACTGAAAGGCATGGTTGCTTGCTCTCCTAGTATCCAAATCAATCAGGCCATTCCAAGGCCTCAAGTTTGTCCTCCTCACTTCAGTCACCAAATTGATTCGGTGCAGCAAAATTGTTTAGGTGCAATCAAACAAAGCCCTTTCACCCTGTATAATCAGAAAGCAAATTTTGAGGAGCCTTTTCCAGGTGGATATAAATCTTTCACAATCAGCCCATATGGACCTGTACCAACATTAATGCATCATTACTCCAGCCAGAATGGGGGCTCGAGCTCTCTTGATCTGAACAGCTCAAGCTGTGCCATCAACTTTCCTTACTCACGTCTAGATTCCGGAAGGAACTTCCGATCATCGTGGTCTCAGTTCTCTACAGAAAGCACCCCATGGTTTTCAGATGCAAAACAAAAGAAACTACTAATGGATTTTCATGAATTATATTCTTCATCTGACAGGAAACATCATTACTGCAGCAGCATTACTGGGGATAGCCGTCAAACTGACCCTTCACTATATCTTGCATCAGAGCGCTTCTGTTCTTTCACTCAGCGCCCTCAACATGCATTGGGGAATCCAGTCTCTCTACCATCTTTAGCTAACAATGTCCCTATGCCACTCCAAATAGGTTCCAGAGTAAACACTGGCTCATATAAAAGAAATGGTGACGTGACCAAAATCATATCTACTCCTTGTCTT</genome_strand>
        <mrna_strand>ATGATCAACAAAATCTCACCCCGTATCCTGTGCTGGGAATACTGAAAGGCATGGTTGCTTGCTCTCCTAGTATCCAAATCAATCAGGCCATTCCAAGGCCTCAAGTTTGTCCTCCTCACTTCAGTCACCAAATTGATTCGGTGCAGCAAAATTGTTTAGGTGCAATCAAACAAAGCCCTTTCACCCTGTATAATCAGAAAGCAAATTTTGAGGAGCCTTTTCCAGGTGGATATAAATCTTTCACAATCAGCCCATATGGACCTGTACCAACATTAATGCATCATTACTCCAGCCAGAATGGGGGCTCGAGCTCTCTTGATCTGAACAGCTCAAGCTGTGCCATCAACTTTCCTTACTCACGTCTAGATTCCGGAAGGAACTTCCGATCATCGTGGTCTCAGTTCTCTACAGAAAGCACCCCATGGTTTTCAGATGCAAAACAAAAGAAACTACTAATGGATTTTCATGAATTATATTCTTCATCTGACAGGAAACATCATTACTGCAGCAGCATTACTGGGGATAGCCGTCAAACTGACCCTTCACTATATCTTGCATCAGAGCGCTTCTGTTCTTTCACTCAGCGCCCTCAACATGCATTGGGGAATCCAGTCTCTCTACCATCTTTAGCTAACAATGTCCCTATGCCACTCCAAATAGGTTCCAGAGTAAACACTGGCTCATATAAAAGAAATGGTGACGTGACCAAAATCATATCTACTCCTTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7342" PGL_stop="1204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7342" e_stop="7074"/>
            <exon e_start="6678" e_stop="6589"/>
            <exon e_start="6087" e_stop="6009"/>
            <exon e_start="5786" e_stop="5709"/>
            <exon e_start="4319" e_stop="4271"/>
            <exon e_start="3116" e_stop="3067"/>
            <exon e_start="2342" e_stop="2193"/>
            <exon e_start="1727" e_stop="1647"/>
            <exon e_start="1541" e_stop="1204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.373" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.852" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7342" e_stop="7074" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7073" i_stop="6679" i_length="395"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6678" e_stop="6589" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.373" acc_prob="0.965">
            <gDNA_intron_boundary i_start="6588" i_stop="6088" i_length="501"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6087" e_stop="6009" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.984">
            <gDNA_intron_boundary i_start="6008" i_stop="5787" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5786" e_stop="5709" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="5708" i_stop="4320" i_length="1389"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4319" e_stop="4271" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.852" acc_prob="0.751">
            <gDNA_intron_boundary i_start="4270" i_stop="3117" i_length="1154"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3116" e_stop="3067" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3066" i_stop="2343" i_length="724"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2342" e_stop="2193" e_length="150"/>
          </exon>
          <intron i_serial="7" don_prob="0.936" acc_prob="0.920">
            <gDNA_intron_boundary i_start="2192" i_stop="1728" i_length="465"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="1727" e_stop="1647" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.922" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1646" i_stop="1542" i_length="105"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="1541" e_stop="1204" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7342" stop="7074"/>
              <exon start="6678" stop="6589"/>
              <exon start="6087" stop="6009"/>
              <exon start="5786" stop="5709"/>
              <exon start="4319" stop="4271"/>
              <exon start="3116" stop="3067"/>
              <exon start="2342" stop="2193"/>
              <exon start="1727" stop="1647"/>
              <exon start="1541" stop="1204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGCTTCGAAGCTCGTTTTGAACCGACTGAGATCTCTCTGTAGAGTCTCTCAACTCAGCGACGTCCGTTTTGATAAACTCAGAGACCCGGTTTCCATTTTCTCCACCTCACAAAATCAGGTAACATGGCGATCTTATTCCGAAGCTTCTCAGCCAACTCCGATAAATCCTCCACCACCACCTCCTCCATCCCCTAATACTTCTACAACAACTTCAAGTTCTCTCAATGAATTTGAACTTGCCAAATTCTCTGCCATTGCCGAAACCTG : GTGGGATGCAGAAGGACCCTTTAAGCCATTACATCTGATGAACCCTACAAGACTTGCTTTTATTAGGTCCACTCTTTGTCGGCACTTCAG : AAAGGATCCAAATTGCACTAGACCTTTTGAAGGACTGAAGTTTGTTGATGTTGGTTGTGGAGGCGGAATTTTATCTGAG : CCTTTGGCTCGAATGGGAGCTACGGTCACGGGAGTTGATGCTGTGGACAAAAATATTAAGATTGCTCGCCTTCATGCG : GATTTGGATCCACAAACTTCTTCAATTGAATATCGGTGCACAACAGCTG : AAAGCCTGGTTGAAGAACAGAGACAATTCGATGCTGTGATTGCGCTAGAG : GTGATTGAGCATGTAGCAGATCCTGCTGGATTCTGCAAATCATTATCAGCGTTGACCATTCCTGGTGGTGCTACAGTGATATCAACGATTAATCGTTCAATGAGAGCATATGCAACGGCAATTGTTGCAGCAGAGTATCTCCTACATTGG : CTTCCAAAAGGTACACATCAATGGTCAAGCTTTCTAACCCCAGAAGAACTAGTCCTCATTCTTCAGCGCGCTTCTATATCG : GTGCAAGAGATGGCTGGATTTGTGTACAACCCTTTGACGGGTCGCTGGTCCTTGTCCGATGACATCAGTGTTAATTTCATCGCTTTCGGAACAAAATCAGCCAAGAAGGATGAAACTCTAGATTAAGTTACGATATAGCTGTCAATTTTATTCTGCTGTTAATCTCTTAACCCATTCTGTATGTAATCTCTTTTTCAGTTTTGTTGGATGATGAATGCAATTTCTATATGTTAGAATATGAACATCCACATCACAAGTTCTTAACTTGAATGAAAATGTACCATTTCGAAATTTCAAATACATGTGTATTATCTTTGATTGATAAAATTTGTAACTTC</gDNA_template>
            <first_frame> M  A  S  K  L  V  L  N  R  L  R  S  L  C  R  V  S  Q  L  S  D  V  R  F  D  K  L  R  D  P  V  S  I  F  S  T  S  Q  N  Q  V  T  W  R  S  Y  S  E  A  S  Q  P  T  P  I  N  P  P  P  P  P  P  P  S  P  N  T  S  T  T  T  S  S  S  L  N  E  F  E  L  A  K  F  S  A  I  A  E  T  W :   W  D  A  E  G  P  F  K  P  L  H  L  M  N  P  T  R  L  A  F  I  R  S  T  L  C  R  H  F  R :   K  D  P  N  C  T  R  P  F  E  G  L  K  F  V  D  V  G  C  G  G  G  I  L  S  E  :  P  L  A  R  M  G  A  T  V  T  G  V  D  A  V  D  K  N  I  K  I  A  R  L  H  A  :  D  L  D  P  Q  T  S  S  I  E  Y  R  C  T  T  A   : E  S  L  V  E  E  Q  R  Q  F  D  A  V  I  A  L  E  :  V  I  E  H  V  A  D  P  A  G  F  C  K  S  L  S  A  L  T  I  P  G  G  A  T  V  I  S  T  I  N  R  S  M  R  A  Y  A  T  A  I  V  A  A  E  Y  L  L  H  W  :  L  P  K  G  T  H  Q  W  S  S  F  L  T  P  E  E  L  V  L  I  L  Q  R  A  S  I  S  :  V  Q  E  M  A  G  F  V  Y  N  P  L  T  G  R  W  S  L  S  D  D  I  S  V  N  F  I  A  F  G  T  K  S  A  K  K  D  E  T  L  D  *  V  T  I  *  L  S  I  L  F  C  C  *  S  L  N  P  F  C  M  *  S  L  F  Q  F  C  W  M  M  N  A  I  S  I  C  *  N  M  N  I  H  I  T  S  S  *  L  E  *  K  C  T  I  S  K  F  Q  I  H  V  Y  Y  L  *  L  I  K  F  V  T   </first_frame>
            <second_frame>  W  L  R  S  S  F  *  T  D  *  D  L  S  V  E  S  L  N  S  A  T  S  V  L  I  N  S  E  T  R  F  P  F  S  P  P  H  K  I  R  *  H  G  D  L  I  P  K  L  L  S  Q  L  R  *  I  L  H  H  H  L  L  H  P  L  I  L  L  Q  Q  L  Q  V  L  S  M  N  L  N  L  P  N  S  L  P  L  P  K  P   : G  G  M  Q  K  D  P  L  S  H  Y  I  *  *  T  L  Q  D  L  L  L  L  G  P  L  F  V  G  T  S   : E  R  I  Q  I  A  L  D  L  L  K  D  *  S  L  L  M  L  V  V  E  A  E  F  Y  L  S :   L  W  L  E  W  E  L  R  S  R  E  L  M  L  W  T  K  I  L  R  L  L  A  F  M  R :   I  W  I  H  K  L  L  Q  L  N  I  G  A  Q  Q  L  :  K  A  W  L  K  N  R  D  N  S  M  L  *  L  R  *  R :   *  L  S  M  *  Q  I  L  L  D  S  A  N  H  Y  Q  R  *  P  F  L  V  V  L  Q  *  Y  Q  R  L  I  V  Q  *  E  H  M  Q  R  Q  L  L  Q  Q  S  I  S  Y  I  G :   F  Q  K  V  H  I  N  G  Q  A  F  *  P  Q  K  N  *  S  S  F  F  S  A  L  L  Y  R :   C  K  R  W  L  D  L  C  T  T  L  *  R  V  A  G  P  C  P  M  T  S  V  L  I  S  S  L  S  E  Q  N  Q  P  R  R  M  K  L  *  I  K  L  R  Y  S  C  Q  F  Y  S  A  V  N  L  L  T  H  S  V  C  N  L  F  F  S  F  V  G  *  *  M  Q  F  L  Y  V  R  I  *  T  S  T  S  Q  V  L  N  L  N  E  N  V  P  F  R  N  F  K  Y  M  C  I  I  F  D  *  *  N  L  *  L  </second_frame>
            <third_frame>   G  F  E  A  R  F  E  P  T  E  I  S  L  *  S  L  S  T  Q  R  R  P  F  *  *  T  Q  R  P  G  F  H  F  L  H  L  T  K  S  G  N  M  A  I  L  F  R  S  F  S  A  N  S  D  K  S  S  T  T  T  S  S  I  P  *  Y  F  Y  N  N  F  K  F  S  Q  *  I  *  T  C  Q  I  L  C  H  C  R  N  L  :  V  G  C  R  R  T  L  *  A  I  T  S  D  E  P  Y  K  T  C  F  Y  *  V  H  S  L  S  A  L  Q  :  K  G  S  K  L  H  *  T  F  *  R  T  E  V  C  *  C  W  L  W  R  R  N  F  I  *   : A  F  G  S  N  G  S  Y  G  H  G  S  *  C  C  G  Q  K  Y  *  D  C  S  P  S  C   : G  F  G  S  T  N  F  F  N  *  I  S  V  H  N  S  * :   K  P  G  *  R  T  E  T  I  R  C  C  D  C  A  R   : G  D  *  A  C  S  R  S  C  W  I  L  Q  I  I  I  S  V  D  H  S  W  W  C  Y  S  D  I  N  D  *  S  F  N  E  S  I  C  N  G  N  C  C  S  R  V  S  P  T  L   : A  S  K  R  Y  T  S  M  V  K  L  S  N  P  R  R  T  S  P  H  S  S  A  R  F  Y  I   : G  A  R  D  G  W  I  C  V  Q  P  F  D  G  S  L  V  L  V  R  *  H  Q  C  *  F  H  R  F  R  N  K  I  S  Q  E  G  *  N  S  R  L  S  Y  D  I  A  V  N  F  I  L  L  L  I  S  *  P  I  L  Y  V  I  S  F  S  V  L  L  D  D  E  C  N  F  Y  M  L  E  Y  E  H  P  H  H  K  F  L  T  *  M  K  M  Y  H  F  E  I  S  N  T  C  V  L  S  L  I  D  K  I  C  N  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0023C09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7342" stop="7074"/>
                    <exon start="6678" stop="6589"/>
                    <exon start="6087" stop="6009"/>
                    <exon start="5786" stop="5709"/>
                    <exon start="4319" stop="4271"/>
                    <exon start="3116" stop="3067"/>
                    <exon start="2342" stop="2193"/>
                    <exon start="1727" stop="1647"/>
                    <exon start="1541" stop="1416"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MASKLVLNRLRSLCRVSQLSDVRFDKLRDPVSIFSTSQNQVTWRSYSEASQPTPINPPPPPPPSPNTSTTTSSSLNEFELAKFSAIAETWWDAEGPFKPLHLMNPTRLAFIRSTLCRHFRKDPNCTRPFEGLKFVDVGCGGGILSEPLARMGATVTGVDAVDKNIKIARLHADLDPQTSSIEYRCTTAESLVEEQRQFDAVIALEVIEHVADPAGFCKSLSALTIPGGATVISTINRSMRAYATAIVAAEYLLHWLPKGTHQWSSFLTPEELVLILQRASISVQEMAGFVYNPLTGRWSLSDDISVNFIAFGTKSAKKDETLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="18870" PGL_stop="8873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18870" e_stop="18677"/>
            <exon e_start="18592" e_stop="18423"/>
            <exon e_start="18337" e_stop="18266"/>
            <exon e_start="17673" e_stop="17523"/>
            <exon e_start="14733" e_stop="14625"/>
            <exon e_start="14543" e_stop="14426"/>
            <exon e_start="12809" e_stop="12662"/>
            <exon e_start="11805" e_stop="11557"/>
            <exon e_start="11043" e_stop="10918"/>
            <exon e_start="10785" e_stop="10685"/>
            <exon e_start="9683" e_stop="9609"/>
            <exon e_start="9447" e_stop="9051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18870" e_stop="18677" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18676" i_stop="18593" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18592" e_stop="18423" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="18422" i_stop="18338" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18337" e_stop="18266" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18265" i_stop="17674" i_length="592"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17673" e_stop="17523" e_length="151"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.969">
            <gDNA_intron_boundary i_start="17522" i_stop="14734" i_length="2789"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14733" e_stop="14625" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14624" i_stop="14544" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14543" e_stop="14426" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.954">
            <gDNA_intron_boundary i_start="14425" i_stop="12810" i_length="1616"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12809" e_stop="12662" e_length="148"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.814">
            <gDNA_intron_boundary i_start="12661" i_stop="11806" i_length="856"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="11805" e_stop="11557" e_length="249"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.920">
            <gDNA_intron_boundary i_start="11556" i_stop="11044" i_length="513"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="11043" e_stop="10918" e_length="126"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10917" i_stop="10786" i_length="132"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="10785" e_stop="10685" e_length="101"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="10684" i_stop="9684" i_length="1001"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="9683" e_stop="9609" e_length="75"/>
          </exon>
          <intron i_serial="11" don_prob="0.989" acc_prob="0.982">
            <gDNA_intron_boundary i_start="9608" i_stop="9448" i_length="161"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="9447" e_stop="9051" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18870" stop="18677"/>
              <exon start="18592" stop="18423"/>
              <exon start="18337" stop="18266"/>
              <exon start="17673" stop="17523"/>
              <exon start="14733" stop="14625"/>
              <exon start="14543" stop="14426"/>
              <exon start="12809" stop="12662"/>
              <exon start="11805" stop="11557"/>
              <exon start="11043" stop="10918"/>
              <exon start="10785" stop="10685"/>
              <exon start="9683" stop="9609"/>
              <exon start="9447" stop="9051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18840" stop="18677"/>
              <exon start="18592" stop="18423"/>
              <exon start="18337" stop="18266"/>
              <exon start="17673" stop="17523"/>
              <exon start="14733" stop="14625"/>
              <exon start="14543" stop="14426"/>
              <exon start="12809" stop="12662"/>
              <exon start="11805" stop="11784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTCAGTCTTCTTTGACAAACCCCCAAAGCGCCATAAAAAGAGTATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG : GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG : GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAG : GTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG : AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAG : GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG : TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG : CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG : GGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAG : ATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAG : ATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG : CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCT</gDNA_template>
            <first_frame> V  S  V  F  F  D  K  P  P  K  R  H  K  K  S  I  H  E  N  S  S  I  V  T  S  H  A  T  S  T  Q  P  A  S  S  R  H  C  Y  A  R  Y  G  S  *  E  L  K  R  L  P  S  *  R  T  Q  A  T  R  K  *  S  I  Q  R :   A  *  V  F  A  S  Y  *  S  V  H  T  S  D  *  V  E  R  *  E  C  G  V  L  C  *  P  C  V  C  S  L  Q  I  G  G  I  W  K  R  N  T  G  W  N  *  S  Y  *  N  *  P  *  I  F  K   : G  L  L  *  E  R  S  C  I  F  G  N  G  E  V  Q  R  C  T  Q  G  F  S  T   : G  Q  E  I  M  S  K  R  P  R  C  Y  Q  K  I  E  G  M  *  E  S  C  H  E  A  K  I  *  R  S  Y  F  C  P  R  I  S  E  A  F  S  S  *  L  Y  *  L  S  F  C  R :   G  G  A  S  I  C  W  C  K  N  R  G  R  C  C  N  I  R  F  C  E  E  D  A  G  *  L  Q  K  P  E  E  L  A  *  E  :  V  C  L  P  N  S  T  A  N  K  R  N  V  A  S  T  A  L  P  C  *  H  C  C  S  R  R  E  A  L  H  C  M  W  *  C  T  W  S   : V  L  *  P  P  K  Y  F  R  A  Q  W  A  S  I  R  R  Q  S  V  S  V  Q  W  *  F  C  *  *  R  V  F  L  S  R  G  H  I  D  I  I  C  L  Q  V  H  V  S  I  S :   Y  T  P  G  E  R  K  S  R  K  Q  E  H  E  Q  N  I  W  V  *  G  R  G  Q  I  Q  V  K  *  N  I  C  G  T  L  C  R  S  V  L  L  L  T  F  G  P  C  H  K  *  E  S  L  C  S  T  W  R  S  F  *  C  *  W  R  E  A  L  *  Y  *  S  N  *  S  V  L  *  A  P  R  R  G :   V  N  V  *  I  V  V  E  *  S  T  T  S  A  W  *  R  T  *  *  T  R  C  W  S  F  F  R  G  R  R  N  *  K  I  L  A  G  K  *  S  R :   F  S  G  A  I  S  *  S  E  G  *  R  L  *  D  *  A  *  R  Q  T  H  N  G  V  F  R  S  Q  L  L  *  P   : D  G  *  Q  G  C  F  Y  T  I  *  G  S  R  Y  E  A  K  Y  C  D  I  F  S  S   : A  T  S  *  C  Q  T  N  G  I  C  Q  Q  L  P  S  H  V  F  L  K  T  L  E  P  N  V  Q  Y  Y  N  R  C  D  L  L  S  D  *  P  R  A  Y  T  S  G  G  K  R  A  S  T  Y  S  Q  L  A  A  V  S  L  F  G  Q  L  P  D  L  P  A  A  C  E  D  P  H  L  L  C  F  D  *  G  V  N  T  F  S  T  I  T  M  S  C  G  G  L  S  S  V  L  F  I  F  L  F  V  R  L  L  H  F  S  F  L  L  E  C  S  N  W  E  K  L  *  *  V  E  F  W  F  F   </first_frame>
            <second_frame>  S  Q  S  S  L  T  N  P  Q  S  A  I  K  R  V  F  M  K  I  P  V  L  *  L  R  T  Q  H  L  L  S  Q  P  P  V  A  I  V  M  P  G  M  E  A  E  N  S  N  A  S  R  A  E  E  L  K  Q  L  A  N  E  A  F  K   : G  H  K  Y  S  Q  A  I  D  L  Y  T  Q  A  I  E  L  N  G  E  N  A  V  Y  Y  A  N  R  A  F  A  H  S  K  L  E  E  Y  G  S  A  I  Q  D  G  T  R  A  I  E  I  D  P  R  Y  S  K  :  G  Y  Y  R  R  G  A  A  Y  L  A  M  G  K  F  K  D  A  L  K  D  F  Q  Q  :  V  K  K  L  C  P  N  D  P  D  A  T  K  K  L  K  E  C  E  K  A  V  M  K  L  K  F  E  E  A  I  S  V  P  E  S  Q  R  R  S  V  A  D  S  I  D  Y  R  S  V   : E  V  E  P  Q  Y  A  G  A  R  I  E  G  D  V  V  T  L  D  F  V  K  K  M  L  D  D  F  K  N  Q  K  N  L  H  K  R :   Y  A  Y  Q  I  V  L  Q  T  R  E  M  L  R  A  L  P  S  L  V  D  I  V  V  P  E  G  K  H  F  T  V  C  G  D  V  H  G  Q  :  F  Y  D  L  L  N  I  F  E  L  N  G  L  P  S  E  D  N  P  Y  L  F  N  G  D  F  V  D  R  G  S  F  S  L  E  V  I  L  T  L  F  A  F  K  C  M  C  P  S   : A  I  H  L  A  R  G  N  H  E  S  K  S  M  N  K  I  Y  G  F  E  G  E  V  R  S  K  L  S  E  I  F  V  E  L  F  A  E  V  F  C  C  L  P  L  A  H  V  I  N  E  K  V  F  V  V  H  G  G  L  F  S  V  D  G  V  K  L  S  D  I  R  A  I  D  R  F  C  E  P  P  E  E   : G  L  M  C  E  L  L  W  S  D  P  Q  P  Q  P  G  R  G  P  S  K  R  G  V  G  L  S  F  G  G  D  V  T  K  R  F  L  Q  E  N  N  L   : D  L  V  V  R  S  H  E  V  K  D  E  G  Y  E  I  E  H  D  G  K  L  I  T  V  F  S  A  P  N  Y  C  D  Q  :  M  G  N  K  G  A  F  I  R  F  E  A  P  D  M  K  P  N  I  V  T  F  S  A  V  :  P  H  P  D  V  K  P  M  A  Y  A  N  N  F  L  R  M  F  S  *  K  L  W  N  L  T  F  S  I  T  I  D  A  T  F  C  L  T  D  Q  E  H  T  H  Q  E  A  K  E  L  V  L  T  A  N  *  L  Q  C  H  Y  S  D  N  F  L  T  C  P  Q  H  V  R  I  L  T  S  F  V  L  I  K  A  *  T  L  S  L  R  *  Q  C  R  V  V  D  C  P  L  Y  Y  L  Y  S  S  L  *  D  C  Y  T  S  H  F  F  *  N  V  Q  I  G  K  S  F  D  K  S  N  F  G  F  F  </second_frame>
            <third_frame>   L  S  L  L  *  Q  T  P  K  A  P  *  K  E  Y  S  *  K  F  Q  Y  C  D  F  A  R  N  I  Y  S  A  S  L  Q  S  P  L  L  C  P  V  W  K  L  R  T  Q  T  P  P  E  L  K  N  S  S  N  S  Q  M  K  H  S  K  :  G  I  S  I  R  K  L  L  I  C  T  H  K  R  L  S  *  T  V  R  M  R  C  T  M  L  T  V  R  L  L  T  P  N  W  R  N  M  E  A  Q  Y  R  M  E  L  E  L  L  K  L  T  L  D  I  Q  R :   V  I  I  G  E  E  L  H  I  W  Q  W  G  S  S  K  M  H  S  R  I  F  N  R :   S  R  N  Y  V  Q  T  T  Q  M  L  P  K  N  *  R  N  V  R  K  L  S  *  S  *  N  L  K  K  L  F  L  S  Q  N  L  R  G  V  Q  *  L  T  L  L  I  I  V  L  *  :  R  W  S  L  N  M  L  V  Q  E  *  R  E  M  L  *  H  *  I  L  *  R  R  C  W  M  T  S  K  T  R  R  T  C  I  R   : G  M  P  T  K  *  Y  C  K  Q  E  K  C  C  E  H  C  P  P  L  L  T  L  L  F  P  K  G  S  T  S  L  Y  V  V  M  Y  M  V  S :   F  M  T  S  *  I  F  S  S  S  M  G  F  H  Q  K  T  I  R  I  C  S  M  V  I  L  L  I  E  G  L  S  L  *  R  S  Y  *  H  Y  L  P  S  S  A  C  V  H  Q  :  L  Y  T  W  R  E  E  I  T  K  A  R  A  *  T  K  Y  M  G  L  R  A  R  S  D  P  S  *  V  K  Y  L  W  N  S  L  Q  K  C  S  V  A  Y  L  W  P  M  S  *  M  R  K  S  L  *  Y  M  E  V  F  L  V  L  M  A  *  S  S  L  I  L  E  Q  L  I  G  F  V  S  P  Q  K  R  :  G  *  C  V  N  C  C  G  V  I  H  N  L  S  L  V  E  D  L  V  N  E  V  L  V  F  L  S  G  E  T  *  L  K  D  S  C  R  K  I  I  *  :  I  *  W  C  D  L  M  K  *  R  M  K  V  M  R  L  S  M  T  A  N  S  *  R  C  F  P  L  P  I  I  V  T  R :   W  V  T  R  V  L  L  Y  D  L  R  L  P  I  *  S  Q  I  L  *  H  F  Q  Q  C :   H  I  L  M  S  N  Q  W  H  M  P  T  T  S  F  A  C  F  L  K  N  S  G  T  *  R  S  V  L  Q  S  M  R  P  F  V  *  L  T  K  S  I  H  I  R  R  Q  K  S  *  Y  L  Q  P  I  S  C  S  V  I  I  R  T  T  S  *  L  A  R  S  M  *  G  S  S  P  P  L  F  *  L  R  R  K  H  F  L  Y  D  N  N  V  V  W  W  I  V  L  C  I  I  Y  I  P  L  C  K  I  V  T  L  L  I  S  F  R  M  F  K  L  G  K  A  L  I  S  R  I  L  V  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0023C09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18800" stop="18677"/>
                    <exon start="18592" stop="18423"/>
                    <exon start="18337" stop="18266"/>
                    <exon start="17673" stop="17523"/>
                    <exon start="14733" stop="14625"/>
                    <exon start="14543" stop="14426"/>
                    <exon start="12809" stop="12662"/>
                    <exon start="11805" stop="11557"/>
                    <exon start="11043" stop="10918"/>
                    <exon start="10785" stop="10685"/>
                    <exon start="9683" stop="9609"/>
                    <exon start="9447" stop="9388"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1500</number_coding_nucleotides>
                  <number_encoded_amino_acids>500</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTQHLLSQPPVAIVMPGMEAENSNASRAEELKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHSKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATKKLKECEKAVMKLKFEEAISVPESQRRSVADSIDYRSVEVEPQYAGARIEGDVVTLDFVKKMLDDFKNQKNLHKRYAYQIVLQTREMLRALPSLVDIVVPEGKHFTVCGDVHGQFYDLLNIFELNGLPSEDNPYLFNGDFVDRGSFSLEVILTLFAFKCMCPSAIHLARGNHESKSMNKIYGFEGEVRSKLSEIFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKLSDIRAIDRFCEPPEEGLMCELLWSDPQPQPGRGPSKRGVGLSFGGDVTKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVPHPDVKPMAYANNFLRMFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18825" e_stop="18677"/>
            <exon e_start="18592" e_stop="18423"/>
            <exon e_start="18337" e_stop="18266"/>
            <exon e_start="17673" e_stop="17523"/>
            <exon e_start="16549" e_stop="16337"/>
            <exon e_start="14733" e_stop="14625"/>
            <exon e_start="14543" e_stop="14426"/>
            <exon e_start="12809" e_stop="12662"/>
            <exon e_start="11805" e_stop="11557"/>
            <exon e_start="11043" e_stop="10918"/>
            <exon e_start="10785" e_stop="10685"/>
            <exon e_start="9683" e_stop="9609"/>
            <exon e_start="9447" e_stop="8873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.992"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.980"/>
          <exon-intron don_prob="0.989" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18825" e_stop="18677" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18676" i_stop="18593" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="18592" e_stop="18423" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="18422" i_stop="18338" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18337" e_stop="18266" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18265" i_stop="17674" i_length="592"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17673" e_stop="17523" e_length="151"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17522" i_stop="16550" i_length="973"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16549" e_stop="16337" e_length="213"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="16336" i_stop="14734" i_length="1603"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14733" e_stop="14625" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14624" i_stop="14544" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14543" e_stop="14426" e_length="118"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.954">
            <gDNA_intron_boundary i_start="14425" i_stop="12810" i_length="1616"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="12809" e_stop="12662" e_length="148"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.814">
            <gDNA_intron_boundary i_start="12661" i_stop="11806" i_length="856"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="11805" e_stop="11557" e_length="249"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.920">
            <gDNA_intron_boundary i_start="11556" i_stop="11044" i_length="513"/>
          </intron>
          <exon e_serial="10" e_score="0.992">
            <gDNA_exon_boundary e_start="11043" e_stop="10918" e_length="126"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10917" i_stop="10786" i_length="132"/>
          </intron>
          <exon e_serial="11" e_score="0.980">
            <gDNA_exon_boundary e_start="10785" e_stop="10685" e_length="101"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="10684" i_stop="9684" i_length="1001"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="9683" e_stop="9609" e_length="75"/>
          </exon>
          <intron i_serial="12" don_prob="0.989" acc_prob="0.982">
            <gDNA_intron_boundary i_start="9608" i_stop="9448" i_length="161"/>
          </intron>
          <exon e_serial="13" e_score="0.995">
            <gDNA_exon_boundary e_start="9447" e_stop="8873" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18825" stop="18677"/>
              <exon start="18592" stop="18423"/>
              <exon start="18337" stop="18266"/>
              <exon start="17673" stop="17523"/>
              <exon start="16549" stop="16337"/>
              <exon start="14733" stop="14625"/>
              <exon start="14543" stop="14426"/>
              <exon start="12809" stop="12662"/>
              <exon start="11805" stop="11557"/>
              <exon start="11043" stop="10918"/>
              <exon start="10785" stop="10685"/>
              <exon start="9683" stop="9609"/>
              <exon start="9447" stop="8873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317380" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCATGAAAATTCCAGTATTGTGACTTCGCACGCAACATCTACTCAGCCAGCCTCCAGTCGCCATTGTTATGCCCGGTATGGAAGCTGAGAACTCAAACGCCTCCCGAGCTGAAGAACTCAAGCAACTCGCAAATGAAGCATTCAAAG : GGCATAAGTATTCGCAAGCTATTGATCTGTACACACAAGCGATTGAGTTGAACGGTGAGAATGCGGTGTACTATGCTAACCGTGCGTTTGCTCACTCCAAATTGGAGGAATATGGAAGCGCAATACAGGATGGAACTAGAGCTATTGAAATTGACCCTAGATATTCAAAG : GGTTATTATAGGAGAGGAGCTGCATATTTGGCAATGGGGAAGTTCAAAGATGCACTCAAGGATTTTCAACAG : GTCAAGAAATTATGTCCAAACGACCCAGATGCTACCAAAAAATTGAAGGAATGTGAGAAAGCTGTCATGAAGCTAAAATTTGAAGAAGCTATTTCTGTCCCAGAATCTCAGAGGCGTTCAGTAGCTGACTCTATTGATTATCGTTCTGTAG : GATCAGGCCCTGGCTCATCATATGTTCCCACCAAAACAACTGCTGTATCAGCGGCAGCAGCACTAATGGGAGTTCTGGTGGTATATATGGGGACTAAGGCAGCCACAATGGTGGCAGCAGCAGCTTCGGCAGCCTTATTGGTGGTCTTGATAACATTTCTTTGGGGACGTTGCAGTGATGGTTTCTTTACCAAGAGTCGAACACTTGAATTAG : AGGTGGAGCCTCAATATGCTGGTGCAAGAATAGAGGGAGATGTTGTAACATTAGATTTTGTGAAGAAGATGCTGGATGACTTCAAAAACCAGAAGAACTTGCATAAGAG : GTATGCCTACCAAATAGTACTGCAAACAAGAGAAATGTTGCGAGCACTGCCCTCCCTTGTTGACATTGTTGTTCCCGAAGGGAAGCACTTCACTGTATGTGGTGATGTACATGGTCAG : TTTTATGACCTCCTAAATATTTTCGAGCTCAATGGGCTTCCATCAGAAGACAATCCGTATCTGTTCAATGGTGATTTTGTTGATAGAGGGTCTTTCTCTCTAGAGGTCATATTGACATTATTTGCCTTCAAGTGCATGTGTCCATCAG : CTATACACCTGGCGAGAGGAAATCACGAAAGCAAGAGCATGAACAAAATATATGGGTTTGAGGGCGAGGTCAGATCCAAGTTAAGTGAAATATTTGTGGAACTCTTTGCAGAAGTGTTCTGTTGCTTACCTTTGGCCCATGTCATAAATGAGAAAGTCTTTGTAGTACATGGAGGTCTTTTTAGTGTTGATGGCGTGAAGCTCTCTGATATTAGAGCAATTGATCGGTTTTGTGAGCCCCCAGAAGAGG : GGTTAATGTGTGAATTGTTGTGGAGTGATCCACAACCTCAGCCTGGTAGAGGACCTAGTAAACGAGGTGTTGGTCTTTCTTTCGGGGGAGACGTAACTAAAAGATTCTTGCAGGAAAATAATCTAG : ATTTAGTGGTGCGATCTCATGAAGTGAAGGATGAAGGTTATGAGATTGAGCATGACGGCAAACTCATAACGGTGTTTTCCGCTCCCAATTATTGTGACCAG : ATGGGTAACAAGGGTGCTTTTATACGATTTGAGGCTCCCGATATGAAGCCAAATATTGTGACATTTTCAGCAGTG : CCACATCCTGATGTCAAACCAATGGCATATGCCAACAACTTCCTTCGCATGTTTTCTTAAAAACTCTGGAACCTAACGTTCAGTATTACAATCGATGCGACCTTTTGTCTGACTGACCAAGAGCATACACATCAGGAGGCAAAAGAGCTAGTACTTACAGCCAATTAGCTGCAGTGTCATTATTCGGACAACTTCCTGACTTGCCCGCAGCATGTGAGGATCCTCACCTCCTTTGTTTTGATTAAGGCGTAAACACTTTCTCTACGATAACAATGTCGTGTGGTGGATTGTCCTCTGTATTATTTATATTCCTCTTTGTAAGATTGTTACACTTCTCATTTCTTTTAGAATGTTCAAATTGGGAAAAGCTTTGATAAGTCGAATTTTGGTTTTTTCTATTTTCTTAGTTAAAATAGTCTATAATTTTTTCCCCACCCAATCAGCCAAGTGTTACTGTTACGATGTCTATTTTACCATTGGATTGTCGTTTGTCTGTGCCTGTGGCCAGATTACTGGTGTTTCCTACTGATTTTGTTTCGTTATTAATAATGCTTAACAGCTTCTAATGAGTCGAT</gDNA_template>
            <first_frame> I  H  E  N  S  S  I  V  T  S  H  A  T  S  T  Q  P  A  S  S  R  H  C  Y  A  R  Y  G  S  *  E  L  K  R  L  P  S  *  R  T  Q  A  T  R  K  *  S  I  Q  R :   A  *  V  F  A  S  Y  *  S  V  H  T  S  D  *  V  E  R  *  E  C  G  V  L  C  *  P  C  V  C  S  L  Q  I  G  G  I  W  K  R  N  T  G  W  N  *  S  Y  *  N  *  P  *  I  F  K   : G  L  L  *  E  R  S  C  I  F  G  N  G  E  V  Q  R  C  T  Q  G  F  S  T   : G  Q  E  I  M  S  K  R  P  R  C  Y  Q  K  I  E  G  M  *  E  S  C  H  E  A  K  I  *  R  S  Y  F  C  P  R  I  S  E  A  F  S  S  *  L  Y  *  L  S  F  C  R :   I  R  P  W  L  I  I  C  S  H  Q  N  N  C  C  I  S  G  S  S  T  N  G  S  S  G  G  I  Y  G  D  *  G  S  H  N  G  G  S  S  S  F  G  S  L  I  G  G  L  D  N  I  S  L  G  T  L  Q  *  W  F  L  Y  Q  E  S  N  T  *  I  R :   G  G  A  S  I  C  W  C  K  N  R  G  R  C  C  N  I  R  F  C  E  E  D  A  G  *  L  Q  K  P  E  E  L  A  *  E  :  V  C  L  P  N  S  T  A  N  K  R  N  V  A  S  T  A  L  P  C  *  H  C  C  S  R  R  E  A  L  H  C  M  W  *  C  T  W  S   : V  L  *  P  P  K  Y  F  R  A  Q  W  A  S  I  R  R  Q  S  V  S  V  Q  W  *  F  C  *  *  R  V  F  L  S  R  G  H  I  D  I  I  C  L  Q  V  H  V  S  I  S :   Y  T  P  G  E  R  K  S  R  K  Q  E  H  E  Q  N  I  W  V  *  G  R  G  Q  I  Q  V  K  *  N  I  C  G  T  L  C  R  S  V  L  L  L  T  F  G  P  C  H  K  *  E  S  L  C  S  T  W  R  S  F  *  C  *  W  R  E  A  L  *  Y  *  S  N  *  S  V  L  *  A  P  R  R  G :   V  N  V  *  I  V  V  E  *  S  T  T  S  A  W  *  R  T  *  *  T  R  C  W  S  F  F  R  G  R  R  N  *  K  I  L  A  G  K  *  S  R :   F  S  G  A  I  S  *  S  E  G  *  R  L  *  D  *  A  *  R  Q  T  H  N  G  V  F  R  S  Q  L  L  *  P   : D  G  *  Q  G  C  F  Y  T  I  *  G  S  R  Y  E  A  K  Y  C  D  I  F  S  S   : A  T  S  *  C  Q  T  N  G  I  C  Q  Q  L  P  S  H  V  F  L  K  T  L  E  P  N  V  Q  Y  Y  N  R  C  D  L  L  S  D  *  P  R  A  Y  T  S  G  G  K  R  A  S  T  Y  S  Q  L  A  A  V  S  L  F  G  Q  L  P  D  L  P  A  A  C  E  D  P  H  L  L  C  F  D  *  G  V  N  T  F  S  T  I  T  M  S  C  G  G  L  S  S  V  L  F  I  F  L  F  V  R  L  L  H  F  S  F  L  L  E  C  S  N  W  E  K  L  *  *  V  E  F  W  F  F  L  F  S  *  L  K  *  S  I  I  F  S  P  P  N  Q  P  S  V  T  V  T  M  S  I  L  P  L  D  C  R  L  S  V  P  V  A  R  L  L  V  F  P  T  D  F  V  S  L  L  I  M  L  N  S  F  *  *  V  D </first_frame>
            <second_frame>  F  M  K  I  P  V  L  *  L  R  T  Q  H  L  L  S  Q  P  P  V  A  I  V  M  P  G  M  E  A  E  N  S  N  A  S  R  A  E  E  L  K  Q  L  A  N  E  A  F  K   : G  H  K  Y  S  Q  A  I  D  L  Y  T  Q  A  I  E  L  N  G  E  N  A  V  Y  Y  A  N  R  A  F  A  H  S  K  L  E  E  Y  G  S  A  I  Q  D  G  T  R  A  I  E  I  D  P  R  Y  S  K  :  G  Y  Y  R  R  G  A  A  Y  L  A  M  G  K  F  K  D  A  L  K  D  F  Q  Q  :  V  K  K  L  C  P  N  D  P  D  A  T  K  K  L  K  E  C  E  K  A  V  M  K  L  K  F  E  E  A  I  S  V  P  E  S  Q  R  R  S  V  A  D  S  I  D  Y  R  S  V   : G  S  G  P  G  S  S  Y  V  P  T  K  T  T  A  V  S  A  A  A  A  L  M  G  V  L  V  V  Y  M  G  T  K  A  A  T  M  V  A  A  A  A  S  A  A  L  L  V  V  L  I  T  F  L  W  G  R  C  S  D  G  F  F  T  K  S  R  T  L  E  L   : E  V  E  P  Q  Y  A  G  A  R  I  E  G  D  V  V  T  L  D  F  V  K  K  M  L  D  D  F  K  N  Q  K  N  L  H  K  R :   Y  A  Y  Q  I  V  L  Q  T  R  E  M  L  R  A  L  P  S  L  V  D  I  V  V  P  E  G  K  H  F  T  V  C  G  D  V  H  G  Q  :  F  Y  D  L  L  N  I  F  E  L  N  G  L  P  S  E  D  N  P  Y  L  F  N  G  D  F  V  D  R  G  S  F  S  L  E  V  I  L  T  L  F  A  F  K  C  M  C  P  S   : A  I  H  L  A  R  G  N  H  E  S  K  S  M  N  K  I  Y  G  F  E  G  E  V  R  S  K  L  S  E  I  F  V  E  L  F  A  E  V  F  C  C  L  P  L  A  H  V  I  N  E  K  V  F  V  V  H  G  G  L  F  S  V  D  G  V  K  L  S  D  I  R  A  I  D  R  F  C  E  P  P  E  E   : G  L  M  C  E  L  L  W  S  D  P  Q  P  Q  P  G  R  G  P  S  K  R  G  V  G  L  S  F  G  G  D  V  T  K  R  F  L  Q  E  N  N  L   : D  L  V  V  R  S  H  E  V  K  D  E  G  Y  E  I  E  H  D  G  K  L  I  T  V  F  S  A  P  N  Y  C  D  Q  :  M  G  N  K  G  A  F  I  R  F  E  A  P  D  M  K  P  N  I  V  T  F  S  A  V  :  P  H  P  D  V  K  P  M  A  Y  A  N  N  F  L  R  M  F  S  *  K  L  W  N  L  T  F  S  I  T  I  D  A  T  F  C  L  T  D  Q  E  H  T  H  Q  E  A  K  E  L  V  L  T  A  N  *  L  Q  C  H  Y  S  D  N  F  L  T  C  P  Q  H  V  R  I  L  T  S  F  V  L  I  K  A  *  T  L  S  L  R  *  Q  C  R  V  V  D  C  P  L  Y  Y  L  Y  S  S  L  *  D  C  Y  T  S  H  F  F  *  N  V  Q  I  G  K  S  F  D  K  S  N  F  G  F  F  Y  F  L  S  *  N  S  L  *  F  F  P  H  P  I  S  Q  V  L  L  L  R  C  L  F  Y  H  W  I  V  V  C  L  C  L  W  P  D  Y  W  C  F  L  L  I  L  F  R  Y  *  *  C  L  T  A  S  N  E  S   </second_frame>
            <third_frame>   S  *  K  F  Q  Y  C  D  F  A  R  N  I  Y  S  A  S  L  Q  S  P  L  L  C  P  V  W  K  L  R  T  Q  T  P  P  E  L  K  N  S  S  N  S  Q  M  K  H  S  K  :  G  I  S  I  R  K  L  L  I  C  T  H  K  R  L  S  *  T  V  R  M  R  C  T  M  L  T  V  R  L  L  T  P  N  W  R  N  M  E  A  Q  Y  R  M  E  L  E  L  L  K  L  T  L  D  I  Q  R :   V  I  I  G  E  E  L  H  I  W  Q  W  G  S  S  K  M  H  S  R  I  F  N  R :   S  R  N  Y  V  Q  T  T  Q  M  L  P  K  N  *  R  N  V  R  K  L  S  *  S  *  N  L  K  K  L  F  L  S  Q  N  L  R  G  V  Q  *  L  T  L  L  I  I  V  L  *  :  D  Q  A  L  A  H  H  M  F  P  P  K  Q  L  L  Y  Q  R  Q  Q  H  *  W  E  F  W  W  Y  I  W  G  L  R  Q  P  Q  W  W  Q  Q  Q  L  R  Q  P  Y  W  W  S  *  *  H  F  F  G  D  V  A  V  M  V  S  L  P  R  V  E  H  L  N  *  :  R  W  S  L  N  M  L  V  Q  E  *  R  E  M  L  *  H  *  I  L  *  R  R  C  W  M  T  S  K  T  R  R  T  C  I  R   : G  M  P  T  K  *  Y  C  K  Q  E  K  C  C  E  H  C  P  P  L  L  T  L  L  F  P  K  G  S  T  S  L  Y  V  V  M  Y  M  V  S :   F  M  T  S  *  I  F  S  S  S  M  G  F  H  Q  K  T  I  R  I  C  S  M  V  I  L  L  I  E  G  L  S  L  *  R  S  Y  *  H  Y  L  P  S  S  A  C  V  H  Q  :  L  Y  T  W  R  E  E  I  T  K  A  R  A  *  T  K  Y  M  G  L  R  A  R  S  D  P  S  *  V  K  Y  L  W  N  S  L  Q  K  C  S  V  A  Y  L  W  P  M  S  *  M  R  K  S  L  *  Y  M  E  V  F  L  V  L  M  A  *  S  S  L  I  L  E  Q  L  I  G  F  V  S  P  Q  K  R  :  G  *  C  V  N  C  C  G  V  I  H  N  L  S  L  V  E  D  L  V  N  E  V  L  V  F  L  S  G  E  T  *  L  K  D  S  C  R  K  I  I  *  :  I  *  W  C  D  L  M  K  *  R  M  K  V  M  R  L  S  M  T  A  N  S  *  R  C  F  P  L  P  I  I  V  T  R :   W  V  T  R  V  L  L  Y  D  L  R  L  P  I  *  S  Q  I  L  *  H  F  Q  Q  C :   H  I  L  M  S  N  Q  W  H  M  P  T  T  S  F  A  C  F  L  K  N  S  G  T  *  R  S  V  L  Q  S  M  R  P  F  V  *  L  T  K  S  I  H  I  R  R  Q  K  S  *  Y  L  Q  P  I  S  C  S  V  I  I  R  T  T  S  *  L  A  R  S  M  *  G  S  S  P  P  L  F  *  L  R  R  K  H  F  L  Y  D  N  N  V  V  W  W  I  V  L  C  I  I  Y  I  P  L  C  K  I  V  T  L  L  I  S  F  R  M  F  K  L  G  K  A  L  I  S  R  I  L  V  F  S  I  F  L  V  K  I  V  Y  N  F  F  P  T  Q  S  A  K  C  Y  C  Y  D  V  Y  F  T  I  G  L  S  F  V  C  A  C  G  Q  I  T  G  V  S  Y  *  F  C  F  V  I  N  N  A  *  Q  L  L  M  S  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0023C09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18800" stop="18677"/>
                    <exon start="18592" stop="18423"/>
                    <exon start="18337" stop="18266"/>
                    <exon start="17673" stop="17523"/>
                    <exon start="16549" stop="16337"/>
                    <exon start="14733" stop="14625"/>
                    <exon start="14543" stop="14426"/>
                    <exon start="12809" stop="12662"/>
                    <exon start="11805" stop="11557"/>
                    <exon start="11043" stop="10918"/>
                    <exon start="10785" stop="10685"/>
                    <exon start="9683" stop="9609"/>
                    <exon start="9447" stop="9388"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1713</number_coding_nucleotides>
                  <number_encoded_amino_acids>571</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTQHLLSQPPVAIVMPGMEAENSNASRAEELKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHSKLEEYGSAIQDGTRAIEIDPRYSKGYYRRGAAYLAMGKFKDALKDFQQVKKLCPNDPDATKKLKECEKAVMKLKFEEAISVPESQRRSVADSIDYRSVGSGPGSSYVPTKTTAVSAAAALMGVLVVYMGTKAATMVAAAASAALLVVLITFLWGRCSDGFFTKSRTLELEVEPQYAGARIEGDVVTLDFVKKMLDDFKNQKNLHKRYAYQIVLQTREMLRALPSLVDIVVPEGKHFTVCGDVHGQFYDLLNIFELNGLPSEDNPYLFNGDFVDRGSFSLEVILTLFAFKCMCPSAIHLARGNHESKSMNKIYGFEGEVRSKLSEIFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKLSDIRAIDRFCEPPEEGLMCELLWSDPQPQPGRGPSKRGVGLSFGGDVTKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVPHPDVKPMAYANNFLRMFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0023C09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9206" stop="8919"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRRKHFLYDNNVVWWIVLCIIYIPLCKIVTLLISFRMFKLGKALISRILVFSIFLVKIVYNFFPTQSAKCYCYDVYFTIGLSFVCACGQITGVSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="29367" PGL_stop="30230"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29367" e_stop="30230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="29367" e_stop="30230" e_length="864"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29367" stop="30230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331654" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTATTCTTTTTTTAATCAATGACCTCTTATAGCTGCACGAAAGCAAAAAAATGAAAAATAAAATAAAAGGAAGCTTGGAGGAAAGAATACCCGCAAATGTCTTTGTTTTATTAATTTATAGCTACATGAAGAGAAAAAAGTATTTATAAGCTAGTAGAAGAAGTACAAACAAATACATATTCAGGTTTGGCCTTTAAACCCTCTGTTATGGGAGGAACTTTGGAACAAAAAGTGAAGAAAATTCCTGTAACATTCCTTCCATAGTCTCTCTGGGAAATTGATTATCAACACTTGCCTATCTGTTCATTATAGTCTCTCTGGGATATTGATTATCAACACTTGCCTATCTGTTCATTCTTACTGCCATGTTTATTATTGTAACAAATGAGGAATGTTGTGTTTGTACTGTTTTAAACTATATATGAAAACAAAAGGATAGTCTCGTGCGCTAACCTCTCGTTACTTAGGGGTCCAGGGAAGGGCTGGAACCATATTGGGTATATGTACACAATCTTACTACTTGGCATTTCAGTAAGAAGTTGTTTCCACAGCTTGAAACAATGACTTTGTGGTTGCAGTACACCACTTATCATTGTGCCAAGCCCACCTTCTATTAAATCATCTTTGAATGAACGCAAAAATATATTTTGACTTCAATCAGTGCCCAATGTAGTCAACTTGGCATTCTTCACAAGTTTTTGTACAGTGTGTGAGCTTCATGACCACTTTCTCAGCTTCTAATTGTGTTACTTGCAGGCATGGGCACTTAATTTTTTTCAGAAACTGAAGGCCGTCTTGAAGTTTGATCATTCAAATTCAAAGAGTCACTGGTCTCGCCCAACCTTCTGATGAGATGTGCTTG</gDNA_template>
            <first_frame> G  Y  S  F  F  N  Q  *  P  L  I  A  A  R  K  Q  K  N  E  K  *  N  K  R  K  L  G  G  K  N  T  R  K  C  L  C  F  I  N  L  *  L  H  E  E  K  K  V  F  I  S  *  *  K  K  Y  K  Q  I  H  I  Q  V  W  P  L  N  P  L  L  W  E  E  L  W  N  K  K  *  R  K  F  L  *  H  S  F  H  S  L  S  G  K  L  I  I  N  T  C  L  S  V  H  Y  S  L  S  G  I  L  I  I  N  T  C  L  S  V  H  S  Y  C  H  V  Y  Y  C  N  K  *  G  M  L  C  L  Y  C  F  K  L  Y  M  K  T  K  G  *  S  R  A  L  T  S  R  Y  L  G  V  Q  G  R  A  G  T  I  L  G  I  C  T  Q  S  Y  Y  L  A  F  Q  *  E  V  V  S  T  A  *  N  N  D  F  V  V  A  V  H  H  L  S  L  C  Q  A  H  L  L  L  N  H  L  *  M  N  A  K  I  Y  F  D  F  N  Q  C  P  M  *  S  T  W  H  S  S  Q  V  F  V  Q  C  V  S  F  M  T  T  F  S  A  S  N  C  V  T  C  R  H  G  H  L  I  F  F  R  N  *  R  P  S  *  S  L  I  I  Q  I  Q  R  V  T  G  L  A  Q  P  S  D  E  M  C  L </first_frame>
            <second_frame>  V  I  L  F  L  I  N  D  L  L  *  L  H  E  S  K  K  M  K  N  K  I  K  G  S  L  E  E  R  I  P  A  N  V  F  V  L  L  I  Y  S  Y  M  K  R  K  K  Y  L  *  A  S  R  R  S  T  N  K  Y  I  F  R  F  G  L  *  T  L  C  Y  G  R  N  F  G  T  K  S  E  E  N  S  C  N  I  P  S  I  V  S  L  G  N  *  L  S  T  L  A  Y  L  F  I  I  V  S  L  G  Y  *  L  S  T  L  A  Y  L  F  I  L  T  A  M  F  I  I  V  T  N  E  E  C  C  V  C  T  V  L  N  Y  I  *  K  Q  K  D  S  L  V  R  *  P  L  V  T  *  G  S  R  E  G  L  E  P  Y  W  V  Y  V  H  N  L  T  T  W  H  F  S  K  K  L  F  P  Q  L  E  T  M  T  L  W  L  Q  Y  T  T  Y  H  C  A  K  P  T  F  Y  *  I  I  F  E  *  T  Q  K  Y  I  L  T  S  I  S  A  Q  C  S  Q  L  G  I  L  H  K  F  L  Y  S  V  *  A  S  *  P  L  S  Q  L  L  I  V  L  L  A  G  M  G  T  *  F  F  S  E  T  E  G  R  L  E  V  *  S  F  K  F  K  E  S  L  V  S  P  N  L  L  M  R  C  A   </second_frame>
            <third_frame>   L  F  F  F  *  S  M  T  S  Y  S  C  T  K  A  K  K  *  K  I  K  *  K  E  A  W  R  K  E  Y  P  Q  M  S  L  F  Y  *  F  I  A  T  *  R  E  K  S  I  Y  K  L  V  E  E  V  Q  T  N  T  Y  S  G  L  A  F  K  P  S  V  M  G  G  T  L  E  Q  K  V  K  K  I  P  V  T  F  L  P  *  S  L  W  E  I  D  Y  Q  H  L  P  I  C  S  L  *  S  L  W  D  I  D  Y  Q  H  L  P  I  C  S  F  L  L  P  C  L  L  L  *  Q  M  R  N  V  V  F  V  L  F  *  T  I  Y  E  N  K  R  I  V  S  C  A  N  L  S  L  L  R  G  P  G  K  G  W  N  H  I  G  Y  M  Y  T  I  L  L  L  G  I  S  V  R  S  C  F  H  S  L  K  Q  *  L  C  G  C  S  T  P  L  I  I  V  P  S  P  P  S  I  K  S  S  L  N  E  R  K  N  I  F  *  L  Q  S  V  P  N  V  V  N  L  A  F  F  T  S  F  C  T  V  C  E  L  H  D  H  F  L  S  F  *  L  C  Y  L  Q  A  W  A  L  N  F  F  Q  K  L  K  A  V  L  K  F  D  H  S  N  S  K  S  H  W  S  R  P  T  F  *  *  D  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0023C09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="53452" PGL_stop="54182"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53452" e_stop="54182"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="53452" e_stop="54182" e_length="731"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53452" stop="54182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343787" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATCAACAAAATCTCACCGTGCATCCTGTGCTGGGAATACTGAAAGGCATGGTTGCTTGCTCTCCTAGTATCCAAATCAATCAGGCCATTCCAAGGCCTCAAGTTTGTCCTCCTCACTTCAGTCACCAAATTGATTCGGTGCAGCAAAATTGTTTAGGTGCAATCAAACAAAGCCCTTTCACCCTGTATAATCAGAAAGCAAATTTTGAGGAGCCTTTTCCAGGTGGATATAAATCTTTCACAATCAGCCCATATGGACCTGTACCAACATTAATGCATCATTACTCCAGCCAGAATGGGGGCTCGAGCTCTCTTGATCTGAACAGCTCAAGCTGTGCCATCAACTTTCCTTACTCACGTCTAGATTCCGGAAGGAACTTCCGATCATCGTGGTCTCAGTTCTCTACAGAAAGCACCCCATGGTTTTCAGATGCAAAACAAAAGAAACTACTAATGGATTTTCATGAATTATATTCTTCATCTGACAGGAAACATCATTACTGCAGCAGCATTACTGGGGATAGCCGTCAAACTGACCCTTCACTATATCTTGCATCAGAGCGCTTCTGTTCTTTCACTCAGCGCCCTCAACATGCATTGGGGAATCCAGTCTCTCTACCATCTTTAGCTAACAATGTCCCTATGCCACTCCAAATAGGTTCCAGAGTAAACACTGGCTCATATAAAAGAAATGGTGACGTGACCAAAATCATATCTACTCCTTGTCTT</gDNA_template>
            <first_frame> M  I  N  K  I  S  P  C  I  L  C  W  E  Y  *  K  A  W  L  L  A  L  L  V  S  K  S  I  R  P  F  Q  G  L  K  F  V  L  L  T  S  V  T  K  L  I  R  C  S  K  I  V  *  V  Q  S  N  K  A  L  S  P  C  I  I  R  K  Q  I  L  R  S  L  F  Q  V  D  I  N  L  S  Q  S  A  H  M  D  L  Y  Q  H  *  C  I  I  T  P  A  R  M  G  A  R  A  L  L  I  *  T  A  Q  A  V  P  S  T  F  L  T  H  V  *  I  P  E  G  T  S  D  H  R  G  L  S  S  L  Q  K  A  P  H  G  F  Q  M  Q  N  K  R  N  Y  *  W  I  F  M  N  Y  I  L  H  L  T  G  N  I  I  T  A  A  A  L  L  G  I  A  V  K  L  T  L  H  Y  I  L  H  Q  S  A  S  V  L  S  L  S  A  L  N  M  H  W  G  I  Q  S  L  Y  H  L  *  L  T  M  S  L  C  H  S  K  *  V  P  E  *  T  L  A  H  I  K  E  M  V  T  *  P  K  S  Y  L  L  L  V   </first_frame>
            <second_frame>  *  S  T  K  S  H  R  A  S  C  A  G  N  T  E  R  H  G  C  L  L  S  *  Y  P  N  Q  S  G  H  S  K  A  S  S  L  S  S  S  L  Q  S  P  N  *  F  G  A  A  K  L  F  R  C  N  Q  T  K  P  F  H  P  V  *  S  E  S  K  F  *  G  A  F  S  R  W  I  *  I  F  H  N  Q  P  I  W  T  C  T  N  I  N  A  S  L  L  Q  P  E  W  G  L  E  L  S  *  S  E  Q  L  K  L  C  H  Q  L  S  L  L  T  S  R  F  R  K  E  L  P  I  I  V  V  S  V  L  Y  R  K  H  P  M  V  F  R  C  K  T  K  E  T  T  N  G  F  S  *  I  I  F  F  I  *  Q  E  T  S  L  L  Q  Q  H  Y  W  G  *  P  S  N  *  P  F  T  I  S  C  I  R  A  L  L  F  F  H  S  A  P  S  T  C  I  G  E  S  S  L  S  T  I  F  S  *  Q  C  P  Y  A  T  P  N  R  F  Q  S  K  H  W  L  I  *  K  K  W  *  R  D  Q  N  H  I  Y  S  L  S  </second_frame>
            <third_frame>   D  Q  Q  N  L  T  V  H  P  V  L  G  I  L  K  G  M  V  A  C  S  P  S  I  Q  I  N  Q  A  I  P  R  P  Q  V  C  P  P  H  F  S  H  Q  I  D  S  V  Q  Q  N  C  L  G  A  I  K  Q  S  P  F  T  L  Y  N  Q  K  A  N  F  E  E  P  F  P  G  G  Y  K  S  F  T  I  S  P  Y  G  P  V  P  T  L  M  H  H  Y  S  S  Q  N  G  G  S  S  S  L  D  L  N  S  S  S  C  A  I  N  F  P  Y  S  R  L  D  S  G  R  N  F  R  S  S  W  S  Q  F  S  T  E  S  T  P  W  F  S  D  A  K  Q  K  K  L  L  M  D  F  H  E  L  Y  S  S  S  D  R  K  H  H  Y  C  S  S  I  T  G  D  S  R  Q  T  D  P  S  L  Y  L  A  S  E  R  F  C  S  F  T  Q  R  P  Q  H  A  L  G  N  P  V  S  L  P  S  L  A  N  N  V  P  M  P  L  Q  I  G  S  R  V  N  T  G  S  Y  K  R  N  G  D  V  T  K  I  I  S  T  P  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0023C09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53454" stop="54182"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQQNLTVHPVLGILKGMVACSPSIQINQAIPRPQVCPPHFSHQIDSVQQNCLGAIKQSPFTLYNQKANFEEPFPGGYKSFTISPYGPVPTLMHHYSSQNGGSSSLDLNSSSCAINFPYSRLDSGRNFRSSWSQFSTESTPWFSDAKQKKLLMDFHELYSSSDRKHHYCSSITGDSRQTDPSLYLASERFCSFTQRPQHALGNPVSLPSLANNVPMPLQIGSRVNTGSYKRNGDVTKIISTPCL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 12688 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2114 bytes was the average size of a spliced alignment
$ 10136 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2534 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 10 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-20 23:15:57
-->
