<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-21 23:05:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322064" ref_strand="+" ref_description="SGN-E322064 [cTOB-29-G12]">
      <seq>taattttcactgcaaagcttgctattaatgtcttcccatggttaaggtttgtgccaacgaaaactaataggagaagattgtacatctataacacagttcgtagttcgttaaaatcaatcattgagaaacgagagaaagaggtacaatctggaaaatcacacaacgaagatctattgggtttgttgatgaaatctaatcaggaagaacagcaagggaataagaactcgaataaaggaatgagtacagaggatatgatagaagagtgtaactctttctactttgctggtcaagagactactgcaactttgttaacatggactgcaattgtgttgactatgcatccagattggcaagagaaagctaggaaagaagttcttcaagtcattggaaaagatgaacctaagtttgatcaactcaaccacctaaagattgtaacaatgattttgcacgaggttctgaggctctatccatcaggttctctcgttagagaaacaaacaaaaaaacaaagctcggagggtatacaatcccagcaggtgcgcaacttttagtgcctctacaaacaattcatcgggatacagaggcatggggtgaagatgcattaattttcaatccagaaaggttttcagaaggggtatcaaaagcatcaaaggacctgatgtacttcccatttggttggggttctcggatatgccttggaaatgatgtttcgatgattcaagggaagctttgtttggctaaaatcttacagaactactcatttgagctttccccatcctatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="1" stop="1225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="32" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="46" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33" i_stop="106" i_length="74">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107" g_stop="491" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="431" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="575" g_stop="925" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="782" r_length="351" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E322064" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="32"/>
          <exon e_start="107" e_stop="491"/>
          <exon e_start="575" e_stop="925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTATTAATGTCTTCCCATGGTTAAGGTAGTTGCAATTAACTAATGCCTTTCAGTCTGTTTTTCGCTATGGGTCTTAACAATTGATGATGTATGTAATAGGTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATTGTAAGATTTCCCATCCATCACACTTTTTATTCCGTTATTATCTAATTATTAATTTGTTTGATAGGAGGAAAATGGTACTGTAGGTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCT</genome_strand>
        <mrna_strand>AAGCTTGCTATTAATGTCTTCCCATGGTTAAG..........................................................................GTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATT...................................................................................GTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAAATGATGTTTCGATGATTCAAGGGAAGCTTTGTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390548" ref_strand="+" ref_description="SGN-E390548 [TUS-44-E1]">
      <seq>attttcacttctgagagagcaatgtgaactaattttcactgcaaagcttgctattaatgtcttcccatggttaaggtttgtgccaacgaaaactaataggagaagattgtacatctataacacagttcgtagttcgttaaaatcaatcattgagaaacgagagaaagaggtacaatctggaaaatcacacaacgaagatctattgggtttgttgatgaaatctaatcaggaagaacagcaagggaataagaactcgaataaaggaatgagtacagaggatatgatagaagagtgtaactctttctactttgctggtcaagagactactgcaactttgttaacatggactgcaattgtgttgactatgcatccagattggcaagagaaagctaggaaagaagttcttcaagtcattggaaaagatgaacctaagtttgatcaactcaaccacctaaagattgtaacaatgattttgcacgaggttctgaggctctatccatcaggttctctcgttagagaaacaaacaaaaaaacaaagctcggagggtatacaatcccagcaggtgcgcaacttttagtgcctctacaaacaattcctcgggatacagaggcatggggtgaaaatgctttaattttcaatccaaaaaggttttcaaaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="1" stop="1076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="32" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="75" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33" i_stop="106" i_length="74">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107" g_stop="491" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="460" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="575" g_stop="776" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="662" r_length="202" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E390548" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="32"/>
          <exon e_start="107" e_stop="491"/>
          <exon e_start="575" e_stop="776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTATTAATGTCTTCCCATGGTTAAGGTAGTTGCAATTAACTAATGCCTTTCAGTCTGTTTTTCGCTATGGGTCTTAACAATTGATGATGTATGTAATAGGTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATTGTAAGATTTCCCATCCATCACACTTTTTATTCCGTTATTATCTAATTATTAATTTGTTTGATAGGAGGAAAATGGTACTGTAGGTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGG</genome_strand>
        <mrna_strand>AAGCTTGCTATTAATGTCTTCCCATGGTTAAG..........................................................................GTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATT...................................................................................GTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCCTCGGGATACAGAGGCATGGGGTGAAAATGCTTTAATTTTCAATCCAAAAAGGTTTTCAAAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378004" ref_strand="+" ref_description="SGN-E378004 [TUS-20-N10]">
      <seq>ttttcacttctgagagagcaatgtgaactaattttcactgcaaagcttgctattaatgtcttcccatggttaaggtttgtgccaacgaaaactaataggagaagattgtacatctataacacagttcgtagttcgttaaaatcaatcattgagaaacgagagaaagaggtacaatctggaaaatcacacaacgaagatctattgggtttgttgatgaaatctaatcaggaagaacagcaagggaataagaactcgaataaaggaatgagtacagaggatatgatagaagagtgtaactctttctactttgctggtcaagagactactgcaactttgttaacatggactgcaattgtgttgactatgcatccagattggcaagagaaagctaggaaagaagttcttcaagtcattggaaaagatgaacctaagtttgatcaactcaaccacctaaagattgtaacaatgattttgcacgaggttctgaggctctatccatcaggttctctcgttagagaaacaaacaaaaaaacaaagctcggagggtatacaatcccagcaggtgcgcaacttttagtgcctctacaaacaattcatcgggatacagaggcatggggtgaagatgcattaattttcaatccaaaaaggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="1" stop="1066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="32" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="74" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33" i_stop="106" i_length="74">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107" g_stop="491" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="459" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="575" g_stop="766" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="651" r_length="192" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E378004" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="32"/>
          <exon e_start="107" e_stop="491"/>
          <exon e_start="575" e_stop="766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTATTAATGTCTTCCCATGGTTAAGGTAGTTGCAATTAACTAATGCCTTTCAGTCTGTTTTTCGCTATGGGTCTTAACAATTGATGATGTATGTAATAGGTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATTGTAAGATTTCCCATCCATCACACTTTTTATTCCGTTATTATCTAATTATTAATTTGTTTGATAGGAGGAAAATGGTACTGTAGGTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTT</genome_strand>
        <mrna_strand>AAGCTTGCTATTAATGTCTTCCCATGGTTAAG..........................................................................GTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATT...................................................................................GTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAAAAAGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448985" ref_strand="+" ref_description="SGN-E448985 [cSTS-5-C21]">
      <seq>gggaagttggtattttcacttctgagagagcaatgtgaactaattttcactgcaaagcttgctattaatgtcttcccatggttaaggtttgtgccaacgaaaactaataggagaagattgtacatctataacacagttcgtagttcgctaaaagcaataattgagaaacgagagaaagaggtacaatctggaaaatcacacaatgaagatctgttgggtttgctaatgaaatctaatcaggaagaacagcaagggaataagaactcgaacaaaggaatgagtacagaggatatgatagaagagtgcaactctttctattttgctggtcaagagactactgcaactttgttaacatggactgcaattgtcttgactatgcatccagattggcaagagaaagccaggaaagaagttcttgaagtcattggaaaagatgagcctaagtttgatcaactcaaccatctaaagattgtaactatgatcttgcacgaggttctgaggttatatccatcangttctcttgttagagaaacaaacaaaaagacaaagcttggagagtatacaatcccagcaggtgcgcaacttttagttcctctacaaacaatccatcgcgatacagaggcatggggagaagatgctctaattttcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="1" stop="1055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="32" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="86" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33" i_stop="106" i_length="74">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107" g_stop="491" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="471" r_length="385" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.916" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="575" g_stop="755" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="652" r_length="181" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E448985" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="32"/>
          <exon e_start="107" e_stop="491"/>
          <exon e_start="575" e_stop="755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTATTAATGTCTTCCCATGGTTAAGGTAGTTGCAATTAACTAATGCCTTTCAGTCTGTTTTTCGCTATGGGTCTTAACAATTGATGATGTATGTAATAGGTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATTGTAAGATTTCCCATCCATCACACTTTTTATTCCGTTATTATCTAATTATTAATTTGTTTGATAGGAGGAAAATGGTACTGTAGGTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATC</genome_strand>
        <mrna_strand>AAGCTTGCTATTAATGTCTTCCCATGGTTAAG..........................................................................GTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGCTAAAAGCAATAATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAATGAAGATCTGTTGGGTTTGCTAATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAACAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGCAACTCTTTCTATTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTCTTGACTATGCATCCAGATTGGCAAGAGAAAGCCAGGAAAGAAGTTCTTGAAGTCATTGGAAAAGATGAGCCTAAGTTTGATCAACTCAACCATCTAAAGATT...................................................................................GTAACTATGATCTTGCACGAGGTTCTGAGGTTATATCCATCANGTTCTCTTGTTAGAGAAACAAACAAAAAGACAAAGCTTGGAGAGTATACAATCCCAGCAGGTGCGCAACTTTTAGTTCCTCTACAAACAATCCATCGCGATACAGAGGCATGGGGAGAAGATGCTCTAATTTTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322024" ref_strand="+" ref_description="SGN-E322024 [cTOB-29-F12]">
      <seq>taattttcactgcaaagcttgctattaatgtcttcccatggttaaggtttgtgccaacgaaaactaataggagaagattgtacatctataacacagttcgtagttcgttaaaatcaatcattgagaaacgagagaaagaggtacaatctggaaaatcacacaacgaagatctattgggtttgttgatgaaatctaatcaggaagaacagcaagggaataagaactcgaataaaggaatgagtacagaggatatgatagaagagtgtaactctttctactttgctggtcaagagactactgcaactttgttaacatggactgcaattgtgttgactatgcatccagattggcaagagaaagctaggaaagaagttcttcaagtcattggaaaagatgaacctaagtttgatcaactcaaccacctaaagattgtaacaatggatttgcacgaggttctgaggctctatccatcagggtctctcgttagagaaacaaacaaaaaaacaaagctcggagggtatacaatcccagcaggtgcgcaacttttagtgcctctacaaacaattcatcgggatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="1" stop="1020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="32" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="46" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33" i_stop="106" i_length="74">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107" g_stop="491" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="431" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="575" g_stop="720" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="577" r_length="146" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E322024" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="32"/>
          <exon e_start="107" e_stop="491"/>
          <exon e_start="575" e_stop="720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTATTAATGTCTTCCCATGGTTAAGGTAGTTGCAATTAACTAATGCCTTTCAGTCTGTTTTTCGCTATGGGTCTTAACAATTGATGATGTATGTAATAGGTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATTGTAAGATTTCCCATCCATCACACTTTTTATTCCGTTATTATCTAATTATTAATTTGTTTGATAGGAGGAAAATGGTACTGTAGGTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATAC</genome_strand>
        <mrna_strand>AAGCTTGCTATTAATGTCTTCCCATGGTTAAG..........................................................................GTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATT...................................................................................GTAACAATGGATTTGCACGAGGTTCTGAGGCTCTATCCATCAGGGTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241934" ref_strand="+" ref_description="SGN-E241934 [cLED-27-N8]">
      <seq>ttttcacttctgagagagcaatgtgaactaattttcactgcaaagcttgctattaatgtcttcccatggttaaggtttgtgccaacgaaaactaataggagaagattgtacatctataacacagttcgtagttcgttaaaatcaatcattgagaaacgagagaaagaggtacaatctggaaaatcacacaacgaagatctattgggtttgttgatgaaatctaatcaggaagaacagcaagggaataagaactcgaataaaggaatgagtacagaggatatgatagaagagtgtaactctttctactttgctggtcaagagactactgcaactttgttaacatggactgcaattgtgttgactatgcatccagattggcaagagaaagctaggaaagaagttcttcaagtcattggaaaagatgaacctaagtttgatcaactcaaccacctaaagattgtaacaatgattttgcacgaggttctgaggctctatccatcaagttctctcgttagagaaacaaacaaaaaaacaaagctcggagggtatacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="1" stop="968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="32" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="74" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33" i_stop="106" i_length="74">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107" g_stop="491" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="459" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="575" g_stop="668" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="553" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E241934" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="32"/>
          <exon e_start="107" e_stop="491"/>
          <exon e_start="575" e_stop="668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTATTAATGTCTTCCCATGGTTAAGGTAGTTGCAATTAACTAATGCCTTTCAGTCTGTTTTTCGCTATGGGTCTTAACAATTGATGATGTATGTAATAGGTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATTGTAAGATTTCCCATCCATCACACTTTTTATTCCGTTATTATCTAATTATTAATTTGTTTGATAGGAGGAAAATGGTACTGTAGGTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAA</genome_strand>
        <mrna_strand>AAGCTTGCTATTAATGTCTTCCCATGGTTAAG..........................................................................GTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATT...................................................................................GTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAAGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231852" ref_strand="+" ref_description="SGN-E231852 [cLED-7-G18]">
      <seq>ttttcacttctgagagagcaatgtgaactaattttcactgcaaagcttgctattaatgtcttcccatggttaaggtttgtgccaacgaaaactaataggagaagattgtacatctataacacagttcgtagttcgttaaaatcaatcattgagaaacgagagaaagaggtacaatctggaaaatcacacaacgaagatctattgggtttgttgatgaaatctaatcaggaagaacagcaagggaataagaactcgaataaaggaatgagtacagaggatatgatagaagagtgtaactctttctactttgctggtcaagagactactgcaactttgttaacatggactgcaattgtgttgactatgcatccagattggcaagagaaagctaggaaagaagttcttcaagtcattggaaaagatgaacctaagtttgatcaactcaaccacctaaagattgtaacaatgattttgcacgaggttctgaggctctatccatcaggttctctcgttagagaaacaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="1" stop="941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="32" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="74" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33" i_stop="106" i_length="74">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107" g_stop="491" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="459" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="575" g_stop="641" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="526" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E231852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="32"/>
          <exon e_start="107" e_stop="491"/>
          <exon e_start="575" e_stop="641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCTATTAATGTCTTCCCATGGTTAAGGTAGTTGCAATTAACTAATGCCTTTCAGTCTGTTTTTCGCTATGGGTCTTAACAATTGATGATGTATGTAATAGGTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATTGTAAGATTTCCCATCCATCACACTTTTTATTCCGTTATTATCTAATTATTAATTTGTTTGATAGGAGGAAAATGGTACTGTAGGTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACA</genome_strand>
        <mrna_strand>AAGCTTGCTATTAATGTCTTCCCATGGTTAAG..........................................................................GTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATT...................................................................................GTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390565" ref_strand="+" ref_description="SGN-E390565 [TUS-44-I3]">
      <seq>ccatggttaaggtttgtgccaacgaaaactaataggagaagattgtacatctataacacagttcgtagttcgttaaaatcaatcattgagaaacgagagaaagaggtacaatctggaaaatcacacaacgaagatctattgggtttgttgatgaaatctaatcaggaagaacagcaagggaataagaactcgaataaaggaatgagtacagaggatatgatagaagagtgtaactctttctactttgctggtcaagagactactgcaactttgttaacatggactgcaattgtgttgactatgcatccagattggcaagagaaagctaggaaagaagttcttcaagtcattggaaaagatgaacctaagtttgatcaactcaaccacctaaagattgtaacaatgattttgcgcgaggttctgaggctctatccatcaggttctctcgttagagaaacaaacaaaaaaacaaagctcggagggtatacaatcccagcaggtgcgcaacttttagtgcctctacaaacaattcatcgggatacagaggcatggggtgaagatgcattaatttttcatccagaaaggttttcagaaggggtatcaaaagcatcaaaggacctgatgtacttcccatttggtttggggttctcggatttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="1" stop="1136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22" g_stop="32" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33" i_stop="106" i_length="74">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107" g_stop="491" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="396" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="575" g_stop="836" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="659" r_length="263" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E390565" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22" e_stop="32"/>
          <exon e_start="107" e_stop="491"/>
          <exon e_start="575" e_stop="836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGTTAAGGTAGTTGCAATTAACTAATGCCTTTCAGTCTGTTTTTCGCTATGGGTCTTAACAATTGATGATGTATGTAATAGGTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATTGTAAGATTTCCCATCCATCACACTTTTTATTCCGTTATTATCTAATTATTAATTTGTTTGATAGGAGGAAAATGGTACTGTAGGTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGG-TTGGGGTTCTCGGATATGCC</genome_strand>
        <mrna_strand>CCATGGTTAAG..........................................................................GTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATT...................................................................................GTAACAATGATTTTGCGCGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTTCATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTTGGGGTTCTCGGATTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377340" ref_strand="+" ref_description="SGN-E377340 [TUS-21-E2]">
      <seq>catggttaaggtttgtgccaacgaaaactaataggagaagattgtacatctataacacagttcgtagttcgttaaaatcaatcattgagaaacgagagaaagaggtacaatctggaaaatcacacaacgaagatctattgggtttgttgatgaaatctaatcaggaagaacagcaagggaataagaactcgaataaaggaatgagtacagaggatatgatagaagagtgtaactctttctactttgctggtcaagagactactgcaactttgttaacatggactgcaattgtgttgactatgcatccagattggcaagagaaagctaggaaagaagttcttcaagtcattggaaaagatgaacctaagtttgatcaactcaaccacctaaagattgtaacaatgattttgcacgaggttctgaggctctatccatcaggttctctcgttagagaaacaaacaaaaaaacaaagctcggagggtatacaatcccagcaggtgcgcaacttttagtgcctctacaaacaattcatcgggatacagaggcatggggtgaagatgcattaattttcaatccagaaaggttttcagaaggggtatcaaaagcatcaaaggacctgatgtacttcccatttggttggggttctcggatatgccttggaatgaatgtttcgatgattcaagggaagcttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="1" stop="1174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23" g_stop="32" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33" i_stop="106" i_length="74">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107" g_stop="491" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="395" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="575" g_stop="874" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="695" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E377340" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23" e_stop="32"/>
          <exon e_start="107" e_stop="491"/>
          <exon e_start="575" e_stop="874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTTAAGGTAGTTGCAATTAACTAATGCCTTTCAGTCTGTTTTTCGCTATGGGTCTTAACAATTGATGATGTATGTAATAGGTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATTGTAAGATTTCCCATCCATCACACTTTTTATTCCGTTATTATCTAATTATTAATTTGTTTGATAGGAGGAAAATGGTACTGTAGGTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTT</genome_strand>
        <mrna_strand>CATGGTTAAG..........................................................................GTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATT...................................................................................GTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236534" ref_strand="+" ref_description="SGN-E236534 [cLED-13-M7]">
      <seq>catggttaaggtttgtgccaacgaaaactaataggagaagattgtacatctataacacagttcgtagttcgttaaaatcaatcattgagaaacgagagaaagaggtacaatctggaaaatcacacaacgaagatctattgggtttgttgatgaaatctaatcaggaagaacagcaagggaataagaactcgaataaaggaatgagtacagaggatatgatagaagagtgtaactctttctactttgctggtcaagagactactgcaactttgttaacatggactgcaattgtgttgactatgcatccagattggcaagagaaagctaggaaagaagttcttcaagtcattggaaaagatgaacctaagtttgatcaactcaaccacctaaagattgtaacaatgattttgcacgaggttctgaggctctatccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="1" stop="914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23" g_stop="32" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33" i_stop="106" i_length="74">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107" g_stop="491" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="395" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="575" g_stop="614" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="435" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E236534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23" e_stop="32"/>
          <exon e_start="107" e_stop="491"/>
          <exon e_start="575" e_stop="614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTTAAGGTAGTTGCAATTAACTAATGCCTTTCAGTCTGTTTTTCGCTATGGGTCTTAACAATTGATGATGTATGTAATAGGTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATTGTAAGATTTCCCATCCATCACACTTTTTATTCCGTTATTATCTAATTATTAATTTGTTTGATAGGAGGAAAATGGTACTGTAGGTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCAT</genome_strand>
        <mrna_strand>CATGGTTAAG..........................................................................GTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATT...................................................................................GTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242229" ref_strand="+" ref_description="SGN-E242229 [cLED-37-O10]">
      <seq>catggttaaggtttgtgccaacgaaaactaataggagaagattgtacatctataacacagttcgtagttcgttaaaatcaatcattgagaaacgagagaaagaggtacaatctggaaaatcacacaacgaagatctattgggtttgttgatgaaatctaatcaggaagaacagcgagggaataagaactcgaataaaggaatgagtacagaggatatgatagaagagtgtaactctttctactttgctggtcaagagactactgcaactttgttaacatggactgcaattgtgttgactatgcatccagattggcaagagaaagctaggaaagaagttcttcaagtcattggaaaagatgaacctaagtttgatcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="1" stop="775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23" g_stop="32" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33" i_stop="106" i_length="74">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107" g_stop="475" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="379" r_length="369" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E242229" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23" e_stop="32"/>
          <exon e_start="107" e_stop="475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTTAAGGTAGTTGCAATTAACTAATGCCTTTCAGTCTGTTTTTCGCTATGGGTCTTAACAATTGATGATGTATGTAATAGGTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACT</genome_strand>
        <mrna_strand>CATGGTTAAG..........................................................................GTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCGAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324239" ref_strand="+" ref_description="SGN-E324239 [cTOC-4-A4]">
      <seq>catggttaaagtttgtgccaacgaaaactaataggagaagattgtacatctataacacagttcgtagttcgttaaaatcaatcattgagaaacgagagaaagaggtacaatctggaaaatcacacaacgaagatctattgggtttgttgatgaaatctaatcaggaagaacagcaagggaataagaactcgaataaaggaatgagtacagaggatatgatagaagagtgtaactctttctactttgctggtcaagagactactgcaactttgttaacatggactgcaattgtgttgactatgcatccagattggcaagagaaagctaggaaagaagttcttcaagtcattggaaaagatgaacctaagtttgatcaactcaaccacctaaagattgtaacaatgattttgcacgaagttctgaggctctatccatcaagttctctcgttagagaaacaaacaaaaaaacaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="1" stop="954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107" g_stop="491" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="395" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="575" g_stop="654" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="475" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E324239" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107" e_stop="491"/>
          <exon e_start="575" e_stop="654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATTGTAAGATTTCCCATCCATCACACTTTTTATTCCGTTATTATCTAATTATTAATTTGTTTGATAGGAGGAAAATGGTACTGTAGGTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCT</genome_strand>
        <mrna_strand>GTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATT...................................................................................GTAACAATGATTTTGCACGAAGTTCTGAGGCTCTATCCATCAAGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279984" ref_strand="+" ref_description="SGN-E279984 [cLEL-7-C9](-)">
      <seq>taataattagttaataacggaatataaagtgtgatggatgggacatcttacaatctttaggtggttgagttgatcgaacttaggttcatcttttccaatgacttgaagaacttctttcctagctttctcttgccaatctggatgcatagtcaacacaattgcagtccatgttaacaaagttgcagtagtctcttgaccagcaaagtagaaagagttacgctcttctatcatatcctctgtggtcattcctttattcgagttcttattcccgtgctgttcttcctgattagatttcatcaacaaacccaatagatcctggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="842" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="542" g_stop="221" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E279984" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="542" e_stop="221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAATTAGATAATAACGGAATAAAAAGTGTGATGGATGGGAAATCTTACAATCTTTAGGTGGTTGAGTTGATCAAACTTAGGTTCATCTTTTCCAATGACTTGAAGAACTTCTTTCCTAGCTTTCTCTTGCCAATCTGGATGCATAGTCAACACAATTGCAGTCCATGTTAACAAAGTTGCAGTAGTCTCTTGACCAGCAAAGTAGAAAGAGTTACACTCTTCTATCATATCCTCTGTACTCATTCCTTTATTCGAGTTCTTATTCCCTTGCTGTTCTTCCTGATTAGATTTCATCAACAAACCCAATAGATCTTCGTTG</genome_strand>
        <mrna_strand>TAATAATTAGTTAATAACGGAATATAAAGTGTGATGGATGGGACATCTTACAATCTTTAGGTGGTTGAGTTGATCGAACTTAGGTTCATCTTTTCCAATGACTTGAAGAACTTCTTTCCTAGCTTTCTCTTGCCAATCTGGATGCATAGTCAACACAATTGCAGTCCATGTTAACAAAGTTGCAGTAGTCTCTTGACCAGCAAAGTAGAAAGAGTTACGCTCTTCTATCATATCCTCTGTGGTCATTCCTTTATTCGAGTTCTTATTCCCGTGCTGTTCTTCCTGATTAGATTTCATCAACAAACCCAATAGATCCTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283623" ref_strand="+" ref_description="SGN-E283623 [cLES-1-M11]">
      <seq>taatcaggaagaacagcaagggaatatgaactcgaataaaggaatgagtacagaggatatgatagaagagtgtaactctttctactttgctggtcaagagactactgcaactttgttaacatggactgcaattgtgttgactatgcatccagattggcaagagaaagctaggaaagaagttcttcaagtcattggaaaagatgaacctaagtttgatcaactcaaccacctaaagattgtaacaatgattttgcacgaagttctgaggctctatccatcaggttctctcgttagagaaacaaacaaaaaaacaaagctcggagggtatacaatcccagcaggtgcgcaacttttagtgcctctacaaacaattcatcgggatacagaggcatggggtgaagatgcattaattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="1" stop="1051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="254" g_stop="491" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="575" g_stop="751" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="415" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E283623" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="254" e_stop="491"/>
          <exon e_start="575" e_stop="751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATTGTAAGATTTCCCATCCATCACACTTTTTATTCCGTTATTATCTAATTATTAATTTGTTTGATAGGAGGAAAATGGTACTGTAGGTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTC</genome_strand>
        <mrna_strand>TAATCAGGAAGAACAGCAAGGGAATATGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATT...................................................................................GTAACAATGATTTTGCACGAAGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324479" ref_strand="+" ref_description="SGN-E324479 [cTOC-6-B12]">
      <seq>agcgaactagtccgagtttttttttttttttttttctctaacgggagaacttgatggatagagcctgaggaccttttgcaaaatcattgttacctacaataccattttcctcctatcaaacaaattaataattagataataacggaataaaaagtgtgatggatgggaaatcttacaatctttaggtggttgagttgatcaaacttaggttcatcttttccaatgacttgaagaacttctttcctagctttctcttgccaatctggatgcatagtcaacacaattgcagtccatgttaacaaagttgcagtagtctcttgaccaacaaagtaaaaagagttacactcttctatcatatcctctgtactcattcctttattcgagttcttattcccttgctgttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="958" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="669" g_stop="261" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E324479" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="669" e_stop="261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTATACCCTCCGAGCTTTGTTTTTTTGTTTGTTTCTCTAACGAGAGAACCTGATGGATAGAGCCTCAGAACCTCGTGCAAAATCATTGTTACCTACAGTACCATTTTCCTCCTATCAAACAAATTAATAATTAGATAATAACGGAATAAAAAGTGTGATGGATGGGAAATCTTACAATCTTTAGGTGGTTGAGTTGATCAAACTTAGGTTCATCTTTTCCAATGACTTGAAGAACTTCTTTCCTAGCTTTCTCTTGCCAATCTGGATGCATAGTCAACACAATTGCAGTCCATGTTAACAAAGTTGCAGTAGTCTCTTGACCAGCAAAGTAGAAAGAGTTACACTCTTCTATCATATCCTCTGTACTCATTCCTTTATTCGAGTTCTTATTCCCTTGCTGTTCTTC</genome_strand>
        <mrna_strand>AGCGAA-CTAGTCCGAG-TTTTTTTTTTTTTTTTTTTCTCTAACGGGAGAACTTGATGGATAGAGCCTGAGGACCTTTTGCAAAATCATTGTTACCTACAATACCATTTTCCTCCTATCAAACAAATTAATAATTAGATAATAACGGAATAAAAAGTGTGATGGATGGGAAATCTTACAATCTTTAGGTGGTTGAGTTGATCAAACTTAGGTTCATCTTTTCCAATGACTTGAAGAACTTCTTTCCTAGCTTTCTCTTGCCAATCTGGATGCATAGTCAACACAATTGCAGTCCATGTTAACAAAGTTGCAGTAGTCTCTTGACCAACAAAGTAAAAAGAGTTACACTCTTCTATCATATCCTCTGTACTCATTCCTTTATTCGAGTTCTTATTCCCTTGCTGTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377339" ref_strand="+" ref_description="SGN-E377339 [TUS-21-E2](-)">
      <seq>agttcttcaagtcattggaaaagatgaacctaagtttgatcaactcaaccacctaaagattgtaacaatgattttgcacgaggttctgaggctctatccatcaggttctctcgttagagaaacaaacaaaaaaacaaagctcggagggtatacaatcccagcaggtgcgcaacttttagtgcctctacaaacaattcatcgggatacagaggcatggggtgaagatgcattaattttcaatccagaaaggttttcagaaggggtatcaaaagcatcaaaggacctgatgtacttcccatttggttggggttctcggatatgccttggaatgaatgtttcgatgattcaagggaagcttgttttggctaaaatcttacagaactactcatttgagctttccccatcctatgctcatggtccaacaatgccagctcttgttctacaaccacaatatggtgctcctatgattgttcgaaagctagaatgatcaataaatcacttctatcttgtcaactataagcacaattacaggatgcttaaatttaatgtttcaatcagtttattggttggttaatggttactgaatttagacaaatctcttcgagttttttatatgttatgaagctaactatgctcctctgtttcctcctcttaaaataaacaagaaccaattacgctccttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="131" stop="1497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="431" g_stop="491" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="575" g_stop="1204" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="691" r_length="630" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E377339" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="431" e_stop="491"/>
          <exon e_start="575" e_stop="1204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATTGTAAGATTTCCCATCCATCACACTTTTTATTCCGTTATTATCTAATTATTAATTTGTTTGATAGGAGGAAAATGGTACTGTAGGTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATCAGTTTATTGGTTGGTTAATGGTTACTGAATTTAGACAAATCTCTTCGAGTTTTTTATATGTTATGAAGCTAACTATGCTCCTCTGTTTCCTCCTCTTAAAATAAACAAGAACCAATTACGCTCCTTCATTTACTG</genome_strand>
        <mrna_strand>AGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATT...................................................................................GTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATCAGTTTATTGGTTGGTTAATGGTTACTGAATTTAGACAAATCTCTTCGAGTTTTTTATATGTTATGAAGCTAACTATGCTCCTCTGTTTCCTCCTCTTAAAATAAACAAGAACCAATTACGCTCCTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390547" ref_strand="+" ref_description="SGN-E390547 [TUS-44-E1](-)">
      <seq>caactcaaccacctaaagatgttaacaatgattttgcacgaggttctgaggctctatccatcaggttctctcgttagagaaacaaacaaaaaaacaaagctcggagggtatacaatcccagcaggtgcgcaacttttagtgcctctacaaacaattcatcgggatacagaggcatggggtgaagatgcattaattttcaatccagaaaggttttcagaaggggtatcaaaagcatcaaaggacctgatgtacttcccatttggttggggttctcggatatgccttggaatgaatgtttcgatgattcaagggaagcttgttttggctaaaatcttacagaactactcatttgagctttccccatcctatgctcatggtccaacaatgccagctcttgttctacaaccacaatatggtgctcctatgattgttcgaaagctagaatgatcaataaatcacttctatcttgtcaactataagcacaattacaggatgcttaaatttaatgtttcaatcagtttattggttggttaatggttactgaatttagacaaatctcttcgagttttttatatgttatgaagctaactatgctcctctgtttcctcctcttaaaataaacaagaaccaattacgctcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="171" stop="1492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="471" g_stop="491" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="575" g_stop="1192" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="639" r_length="618" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="652"/>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E390547" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="471" e_stop="491"/>
          <exon e_start="575" e_stop="1192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCAACCACCTAAAGATTGTAAGATTTCCCATCCATCACACTTTTTATTCCGTTATTATCTAATTATTAATTTGTTTGATAGGAGGAAAATGGTACTGTAGGTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATCAGTTTATTGGTTGGTTAATGGTTACTGAATTTAGACAAATCTCTTCGAGTTTTTTATATGTTATGAAGCTAACTATGCTCCTCTGTTTCCTCCTCTTAAAATAAACAAGAACCAATTACGCTC</genome_strand>
        <mrna_strand>CAACTCAACCACCTAAAGATG...................................................................................TTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATCAGTTTATTGGTTGGTTAATGGTTACTGAATTTAGACAAATCTCTTCGAGTTTTTTATATGTTATGAAGCTAACTATGCTCCTCTGTTTCCTCCTCTTAAAATAAACAAGAACCAATTACGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378003" ref_strand="+" ref_description="SGN-E378003 [TUS-20-N10](-)">
      <seq>accacctaaaagattgtaacaaatgattttgcacgaggttctaaggctctatccatcaggttctctcgttagagaaacaaacaanaaaacaaagctcggagggtatacaatcccagcaggtgcgcaacttttagtgcctctacaaacaattcatcgggatacagaggcatggggtgaagatgcattaattttcaatccagaaaggttttcagaaggggtatcaaaagcatcaaaggacctgatgtacttcccatttggttggggttctcggatatgccttggaatgaatgtttcgatgattcaagggaagcttgttttggctaaaatcttacagaactactcatttgagctttccccatcctatgctcatggtccaacaatgccagctcttgttctacaaccacaatatggtgctcctatgattgttcgaaagctagaatgatcaataaatcacttctatcttgtcaactataagcacaattacaggatgcttaaatttaatgtttcaatcagtttattggttggttaatggttactgaatttagacaaatctcttcgagttttttatatgttatgaagctaactatgctcctctgtttcctcctcttaaaataaacaagaaccaattacgctccttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="275" stop="1497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="478" g_stop="491" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="575" g_stop="1204" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="646" r_length="631" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E378003" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="478" e_stop="491"/>
          <exon e_start="575" e_stop="1204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCT-AAAGATTGTAAGATTTCCCATCCATCACACTTTTTATTCCGTTATTATCTAATTATTAATTTGTTTGATAGGAGGAAAATGGTACTGTAGGTAAC-AATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATCAGTTTATTGGTTGGTTAATGGTTACTGAATTTAGACAAATCTCTTCGAGTTTTTTATATGTTATGAAGCTAACTATGCTCCTCTGTTTCCTCCTCTTAAAATAAACAAGAACCAATTACGCTCCTTCATTTACTG</genome_strand>
        <mrna_strand>ACCACCTAAAAGATT...................................................................................GTAACAAATGATTTTGCACGAGGTTCTAAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAANAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATCAGTTTATTGGTTGGTTAATGGTTACTGAATTTAGACAAATCTCTTCGAGTTTTTTATATGTTATGAAGCTAACTATGCTCCTCTGTTTCCTCCTCTTAAAATAAACAAGAACCAATTACGCTCCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318745" ref_strand="+" ref_description="SGN-E318745 [cTOB-9-P14]">
      <seq>ctaaagattgtaacaatgattttgcacgaggttctgaggctctatccatcaggttctctcgttagagaaaccaaacaaaaaaacaaagctcggagggtatacaatcccagcaggtgcgcaacttttagtgcctctacaaacaattcatcgggatacagaggcatggggtgaagatgcattaattttcaatccagaaaggttttcagaaggggtatcaaaagcatcaaaggacctgatgtacttcccatttggttggggttctcggatatgccttggaatgaatgtttcgatgattcaagggaagcttgttttggctaaaatcttacagaactactcatttgagctttccccatcctatgctcatggtccaacaatgccagctcttgttctacaaccacaatatggtgctcctatgattgttcgaaagctagaatgatcaataaatcacttctatcttgtcaactataagcacaattacaggatgcttaaatttaatgtttcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="275" stop="1369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="483" g_stop="491" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="575" g_stop="1069" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="505" r_length="496" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E318745" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="483" e_stop="491"/>
          <exon e_start="575" e_stop="1069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGATTGTAAGATTTCCCATCCATCACACTTTTTATTCCGTTATTATCTAATTATTAATTTGTTTGATAGGAGGAAAATGGTACTGTAGGTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAA-CAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATC</genome_strand>
        <mrna_strand>CTAAAGATT...................................................................................GTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACCAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203228" ref_strand="+" ref_description="SGN-E203228 [cLEB-3-P22](-)">
      <seq>tatccatcaggttctctcgttagggaaacaaacaaaaaaacaaagctcggagggtatacaatcccagcaggtgcgcaacttttagtgcctctacaaacaattcatcgggatacagaggcatggggtgaagatgcattaattttcaatccagaaaggttttcagaaggggtatcaaaagcatcaaaggacctgatgtacttcccatttggttggggttctcggatatgccttggaatgaatgtttcgatgattcaagggaagcttgttttggctaaaatcttacagaactactcatttgagctttccccatcctatgctcatggtccaacaatgccagctcttgttctacaaccacaatatggtgctcctatgattgttcgaaagctagaatgatcaataaatcacttctatcttgtcaactttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="308" stop="1343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="608" g_stop="1032" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="453"/>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E203228" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="608" e_stop="1032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAA</genome_strand>
        <mrna_strand>TATCCATCAGGTTCTCTCGTTAGGGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390799" ref_strand="+" ref_description="SGN-E390799 [TUS-44-I3](-)">
      <seq>tagagaaacaaacaaaaaaacaaagctcggagggtatacaatcccagcaggtgcgcaacttttagtgcctctacaaacaattcatcgggatacagaggcatggggtgaagccgccctaattttcaatccagaaaggttttcagaaggggtatcaaaagcatcaaaggacctgatgtacttcccatttggttggggttctcggatatgccttggaatgaatgtttcgatgattcaagggaagcttgttttggctaaaatcttacagaactactcatttgagctttccccatcctatgctcatggtccaacaatgccagctcttgttctacaaccacaatatggtgctcctatgattgttcgaaagctagaatgatcaataaatcacttctatcttgtcaactataagcacaattacaggatgcttaaatttaatgtttcaatcagtttattggttggttaatggttactgaatttagacaaatctcttcgagttttttatatgttatgaagctaactatgctcctctgtttcctcctcttaaaataaacaagaaccaattacgctccttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="328" stop="1497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="628" g_stop="1204" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E390799" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="628" e_stop="1204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATCAGTTTATTGGTTGGTTAATGGTTACTGAATTTAGACAAATCTCTTCGAGTTTTTTATATGTTATGAAGCTAACTATGCTCCTCTGTTTCCTCCTCTTAAAATAAACAAGAACCAATTACGCTCCTTCATTTACTG</genome_strand>
        <mrna_strand>TAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGCCGCCCTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATCAGTTTATTGGTTGGTTAATGGTTACTGAATTTAGACAAATCTCTTCGAGTTTTTTATATGTTATGAAGCTAACTATGCTCCTCTGTTTCCTCCTCTTAAAATAAACAAGAACCAATTACGCTCCTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220928" ref_strand="+" ref_description="SGN-E220928 [cLEL-22-C18](-)">
      <seq>aaccaaaaaacaaagctcgaagggtatacaatcccagcaggtgcacaacttttagtgcctctacaaacaattcatcgggatacaaaggcatggggtgaagatgcattaattttcaatccagaaaggttttcagaaggggtatcaaaagcatcaaaggacctgatgtacttcccatttggttagggttctcggatatgccttggaatgaatgtttcgataattcaaggaaagcttgttttggctaaaatcttacagaactactcatttgagctttccccatcctatgctcatggtccaacaatgccagctcttgttctacaaccacaatatggtgctcctatgattgttcgaaagctagaatgatcaataaatcacttctatcttgtcaactataagcacaattacaggatgcttaaatttaatgtttcaatcagtttattggttggttaatggttactgaatttagacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="338" stop="1408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="638" g_stop="1107" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="471" polyA_stop="485"/>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E220928" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="638" e_stop="1107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATCAGTTTATTGGTTGGTTAATGGTTACTGAATTTAGACAA</genome_strand>
        <mrna_strand>AACCAAAAAACAAAGCTCGAAGGGTATACAATCCCAGCAGGTGCACAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAAAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTAGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATAATTCAAGGAAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATCAGTTTATTGGTTGGTTAATGGTTACTGAATTTAGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283624" ref_strand="+" ref_description="SGN-E283624 [cLES-1-M11](-)">
      <seq>ggcatggggtgaagatgcattaattttcaatccagaaaggttttcagaaggggtatcaaaagcatcaaaggacctgatgtacttcccatttggttggggttctcggatatgccttggaatgaatgtttcgatgattcaagggaagcttgttttggctaaaatcttacagaactactcatttgagctttccccatcctatgctcatggtccaacaatgccagctcttgttctacaaccacaatatggtgctcctatgattgttcgaaagctagaatgatcaataaatcacttctatcttgtcaactataagcacaattacaggatgcttaaatttaatgtttcaatcagtttattggttggttaatggttactgaatttagacaaatctcttcgagttttttatatgttatgaagctaactatgctcctctgtttcctcctcttaaaataaacaagaaccaattacgctccttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="424" stop="1497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="724" g_stop="1204" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E283624" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="724" e_stop="1204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATCAGTTTATTGGTTGGTTAATGGTTACTGAATTTAGACAAATCTCTTCGAGTTTTTTATATGTTATGAAGCTAACTATGCTCCTCTGTTTCCTCCTCTTAAAATAAACAAGAACCAATTACGCTCCTTCATTTACTG</genome_strand>
        <mrna_strand>GGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATCAGTTTATTGGTTGGTTAATGGTTACTGAATTTAGACAAATCTCTTCGAGTTTTTTATATGTTATGAAGCTAACTATGCTCCTCTGTTTCCTCCTCTTAAAATAAACAAGAACCAATTACGCTCCTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221346" ref_strand="+" ref_description="SGN-E221346 [cLEL-22-C18](-)">
      <seq>ggcatggggtgaaaatgcattaattttcaatccagaaaggttttcagaaggggtatcaaaagcatcaaaggacctaatgtacttcccatttggttggggttctcggatatgccttggaatgaatgtttcgatgattcaagggaagcttgttttggctaaaatcttacagaactactcatttgagctttccccatcctatgctcatggtccaacaatgccagctcttgttctacaaccacaatatggtgctcctatgattgttcgaaagctagaatgatcaataaatcacttctatcttgtcaactataagcacaattacaggatgcttaaatttaatgtttcaatcagtttattggttggttaatggttactgaatttagccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="424" stop="1408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="724" g_stop="1107" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="385" polyA_stop="399"/>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E221346" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="724" e_stop="1107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATCAGTTTATTGGTTGGTTAATGGTTACTGAATTTAGACAA</genome_strand>
        <mrna_strand>GGCATGGGGTGAAAATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTAATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATCAGTTTATTGGTTGGTTAATGGTTACTGAATTTAGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="-" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>agtatgtattaagcaatatcataaaattaactaatatccttagcatgcagcatttgcaattaccataacccttggttgcatcaccaagcacatcaatgaggactcacacctcctcatcatacttatttgggaatttagttcattggattgcatatattaacatatttcaagattcatcatatttattcccctcgtgtccttacgtgacactccactcctcaatatactatcctggcaccggaacgtggcacccgatccatattctatcctggtgtcagaacgtgacacccgatccatattctatcctggtgtcggaacgtgacacccgatccatattctatcctggtaccggaacgtggcacccgatccatattctatcctggtgtcggaacgtgacacccgatccatattctatcctggtaccggaacgtggcacccgatcccctaatctcaccactttcgttcatcaagccttcttttataccaaggcatcattattaacaaagtagattagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="6445" stop="5264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6159" g_stop="5925" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5924" i_stop="5850" i_length="75">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.697" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5849" g_stop="5564" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="515" r_length="280" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E242359" ref_strand="-">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6159" e_stop="5925"/>
          <exon e_start="5849" e_stop="5564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATATATCAGATAACATCATAAAATCAACTAATATCCTTAGCCTGCAGCATTTACAATTACCATAACCCTTGGTTACAACACCAAGCTCATCAATGAGGACTCACGCCTCCTCATCATACTCATTTGGGAATTAGATTCATTAGATTGAATATATTAACATCTTTCAAGATTCATTATCTTTATTCCTCTCGTGTCGGTACGTGACACTCCGCTCCTCAATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATTCTAGTACCGGAATGTGGCACCCGATCCATATTCTATCCTGGTACCAGAGCGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTAACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCCTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAAG</genome_strand>
        <mrna_strand>AGTATGTATTAAGCAATATCATAAAATTAACTAATATCCTTAGCATGCAGCATTTGCAATTACCATAACCCTTGGTTGCATCACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTTATTTGGGAATTTAGTTCATTGGATTGCATATATTAACATATTTCAAGATTCATCATATTTATTCCCCTCGTGTCCTTACGTGACACTCCACTCCTCAATATACTATCCTGG...........................................................................CACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCAGAACGTGACACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACAC-CCGAT-C-CATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACAC-CCGAT-C-CATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACCACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATTATTAACAAAGTAGATTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="6725" stop="7878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7025" g_stop="7578" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7025" e_stop="7578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTATTAAGAGAAGGGGAGGATGGGGAGAATGAACAATTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAAATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCACCACCTCAGACTTCGGAGGTACAACATGCGGCTGCTGCGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAACATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGTTGAATCTGAGGATACCTATGATTTTCTGGTTGACTGTCATGATCTACTACACAAGATGGGTATAGTATAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGATGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGACATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="+" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="7352" stop="9394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7652" g_stop="7838" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7839" i_stop="8581" i_length="743">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8582" g_stop="9095" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7652" e_stop="7838"/>
          <exon e_start="8582" e_stop="9095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATTCCACCCAACTATGTTTCAGTCCACAAGAACGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAATTGCGGATTTCAGCCTTGCAGGTAGCGGCTACGGCAAAATCTTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTAGAGGGAGTGAAGCCAGATGACTTCACCATGGCAACTACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCAGAAGGTTACTCAGTCTGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGAATTCAGAGAGTGTTATAGATGTGGGGAGACTGGACACATTAAGAGGTATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTTACGGAAGAGGTCGTCATTCTGGAGGACGCAGTGGTCGAGGTAATGGTGGTCACCAAAACGGTTGGATGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACGGAAAGACAGGTGAGAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCAGAAGCGGAGACATCAGATGCTGTCATCACAGGTAATCTTTCGGTTTGTGATTGCATGGCTTTTGTATTGTTTAACCCTGGCTCTACATTTTCATATGTATCTTCCGCATTTGCTAATGGTCTTGATTTACATTGTGAATTGCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTATGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTTTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGTTAAAATGGTGATATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAAACCGGTGCGTATCATCTCATTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTTGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTAGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGGGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="9378" stop="8017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9078" g_stop="8317" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9078" e_stop="8317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCTAGAAACTCACGGACCACCGAAACCGACTCAATCAAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAATGAGATGATACGCACCGGTTTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATATCACCATTTTAACATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGCAATTCACAATGTAAATCAAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTTAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATCAACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="8975" stop="8049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8675" g_stop="8345" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8675" e_stop="8345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAATATCACCATTTTAACATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGCAATTCACAATGTAAATCAAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTTAAACAATACAAAAGCCATGCAATCACAAACCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="9378" stop="8118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9078" g_stop="8418" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9078" e_stop="8418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCTAGAAACTCACGGACCACCGAAACCGACTCAATCAAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAATGAGATGATACGCACCGGTTTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATATCACCATTTTAACATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGCAATTCACAATGTAAATCAAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="9447" stop="8189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9147" g_stop="8489" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9147" e_stop="8489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAACTGCCGGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCTAGAAACTCACGGACCACCGAAACCGACTCAATCAAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAATGAGATGATACGCACCGGTTTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATATCACCATTTTAACATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="9896" stop="8618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9596" g_stop="8917" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9596" e_stop="8917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAAGCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAATCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATTACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACACAGCAGGGGCATTCGTAAGACCAAAATACATCACTACAAATTCGTAATGCCCATACCTTGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGATACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAACTGCCGGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="9967" stop="8655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9667" g_stop="8955" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9667" e_stop="8955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAAGCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAATCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATTACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACACAGCAGGGGCATTCGTAAGACCAAAATACATCACTACAAATTCGTAATGCCCATACCTTGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGATACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAACTGCCGGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="9967" stop="8772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9667" g_stop="9072" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9667" e_stop="9072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAAGCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAATCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATTACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACACAGCAGGGGCATTCGTAAGACCAAAATACATCACTACAAATTCGTAATGCCCATACCTTGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGATACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAACTGCCGGTAGTCTATGCACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="9967" stop="8842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9667" g_stop="9142" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9667" e_stop="9142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAAGCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAATCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATTACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACACAGCAGGGGCATTCGTAAGACCAAAATACATCACTACAAATTCGTAATGCCCATACCTTGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGATACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="9896" stop="8938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9596" g_stop="9238" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9596" e_stop="9238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAAGCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAATCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATTACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACACAGCAGGGGCATTCGTAAGACCAAAATACATCACTACAAATTCGTAATGCCCATACCTTGTTCTAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="11447" stop="10670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11147" g_stop="10971" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11147" e_stop="10971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTTCTCCTATATAATTCCTCGAATGGGGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAACATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231589" ref_strand="+" ref_description="SGN-E231589 [cLED-4-L18]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcatagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="12663" stop="11504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12363" g_stop="11803" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E231589" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12363" e_stop="11803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATTAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCGCCCGTCGTGCCTGCGACAGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCATCACGCCCGTGACGATCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATTTCTAAGTATTTTGAAACGAGACCCTTCGACGGTCTGTCGTGCTCATGACGGTCCGTCGTGGGTTTCGTCGTCTCAACCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACATGTCATTACATTA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGA-TG-GCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCATAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396058" ref_strand="+" ref_description="SGN-E396058 [TUS-18-N22]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtgtttccaaaaataaaatctgctactcacaacgactaaacaggtcgttacatttaggttcttcatagttaactattattattattttacgatttataacactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="12664" stop="11498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12364" g_stop="11807" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E396058" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12364" e_stop="11807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATTAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCGCCCGTCGTGCCTGCGACAGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCATCACGCCCGTGACGATCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATTTCTAAGTATTTTGAAACGAGACCCTTCGACGGTCTGTCGTGCTCATGACGGTCCGTCGTGGGTTTCGTCGTCTCAACCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACATGTCATTAC</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGA-TG-GCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTGTTTCCAAAAATAAAATCTGCTACTCACAACGACTAAACAGGTCGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396054" ref_strand="+" ref_description="SGN-E396054 [TUS-18-N18]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="12664" stop="11500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12364" g_stop="11807" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E396054" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12364" e_stop="11807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATTAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCGCCCGTCGTGCCTGCGACAGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCATCACGCCCGTGACGATCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATTTCTAAGTATTTTGAAACGAGACCCTTCGACGGTCTGTCGTGCTCATGACGGTCCGTCGTGGGTTTCGTCGTCTCAACCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACATGTCATTAC</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGA-TG-GCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241959" ref_strand="+" ref_description="SGN-E241959 [cLED-27-I11]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="12663" stop="11516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12363" g_stop="11816" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E241959" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12363" e_stop="11816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATTAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCGCCCGTCGTGCCTGCGACAGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCATCACGCCCGTGACGATCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATTTCTAAGTATTTTGAAACGAGACCCTTCGACGGTCTGTCGTGCTCATGACGGTCCGTCGTGGGTTTCGTCGTCTCAACCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGA-TG-GCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="12663" stop="11589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12363" g_stop="11889" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12363" e_stop="11889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATTAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCGCCCGTCGTGCCTGCGACAGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCATCACGCCCGTGACGATCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATTTCTAAGTATTTTGAAACGAGACCCTTCGACGGTCTGTCGTGCTCATGA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGA-TG-GCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396070" ref_strand="+" ref_description="SGN-E396070 [TUS-18-P18]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtaccgggggggggagtttctaattgttttgaaactagactcctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K11-6m8vK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0025K11.1" temp_strand="-" temp_description="C07HBa0025K11.1  AC232622.1 htgs_phase:3 submitted_to_sgn_as:gi|205277489|gb|AC232622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence">
        <position start="12664" stop="11650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12364" g_stop="11908" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K11.1" gen_strand="-" ref_id="SGN-E396070" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12364" e_stop="11908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATTAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCGCCCGTCGTGCCTGCGACAGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCATCACGCCCGTGACGATCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATTTCTAAGTATTTTGAAACGAGACCCTTCGA</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGA-TG-GCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCGGGGGGGGGAGTTTCTAATTGTTTTGAAACTAGACTCCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>43</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="1204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="32"/>
            <exon e_start="107" e_stop="491"/>
            <exon e_start="575" e_stop="1204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.916" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1" e_stop="32" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="33" i_stop="106" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107" e_stop="491" e_length="385"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.916">
            <gDNA_intron_boundary i_start="492" i_stop="574" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="575" e_stop="1204" e_length="630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="32"/>
              <exon start="107" stop="491"/>
              <exon start="575" stop="925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="32"/>
              <exon start="107" stop="491"/>
              <exon start="575" stop="776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="32"/>
              <exon start="107" stop="491"/>
              <exon start="575" stop="766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="32"/>
              <exon start="107" stop="491"/>
              <exon start="575" stop="755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="32"/>
              <exon start="107" stop="491"/>
              <exon start="575" stop="720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="32"/>
              <exon start="107" stop="491"/>
              <exon start="575" stop="668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="32"/>
              <exon start="107" stop="491"/>
              <exon start="575" stop="641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22" stop="32"/>
              <exon start="107" stop="491"/>
              <exon start="575" stop="836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23" stop="32"/>
              <exon start="107" stop="491"/>
              <exon start="575" stop="874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23" stop="32"/>
              <exon start="107" stop="491"/>
              <exon start="575" stop="614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23" stop="32"/>
              <exon start="107" stop="475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107" stop="491"/>
              <exon start="575" stop="654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="254" stop="491"/>
              <exon start="575" stop="751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="431" stop="491"/>
              <exon start="575" stop="1204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="471" stop="491"/>
              <exon start="575" stop="1192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="478" stop="491"/>
              <exon start="575" stop="1204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="483" stop="491"/>
              <exon start="575" stop="1069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="608" stop="1032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="628" stop="1204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="638" stop="1107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="724" stop="1204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="724" stop="1107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221346" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCTTGCTATTAATGTCTTCCCATGGTTAAG : GTTTGTGCCAACGAAAACTAATAGGAGAAGATTGTACATCTATAACACAGTTCGTAGTTCGTTAAAATCAATCATTGAGAAACGAGAGAAAGAGGTACAATCTGGAAAATCACACAACGAAGATCTATTGGGTTTGTTGATGAAATCTAATCAGGAAGAACAGCAAGGGAATAAGAACTCGAATAAAGGAATGAGTACAGAGGATATGATAGAAGAGTGTAACTCTTTCTACTTTGCTGGTCAAGAGACTACTGCAACTTTGTTAACATGGACTGCAATTGTGTTGACTATGCATCCAGATTGGCAAGAGAAAGCTAGGAAAGAAGTTCTTCAAGTCATTGGAAAAGATGAACCTAAGTTTGATCAACTCAACCACCTAAAGATT : GTAACAATGATTTTGCACGAGGTTCTGAGGCTCTATCCATCAGGTTCTCTCGTTAGAGAAACAAACAAAAAAACAAAGCTCGGAGGGTATACAATCCCAGCAGGTGCGCAACTTTTAGTGCCTCTACAAACAATTCATCGGGATACAGAGGCATGGGGTGAAGATGCATTAATTTTCAATCCAGAAAGGTTTTCAGAAGGGGTATCAAAAGCATCAAAGGACCTGATGTACTTCCCATTTGGTTGGGGTTCTCGGATATGCCTTGGAATGAATGTTTCGATGATTCAAGGGAAGCTTGTTTTGGCTAAAATCTTACAGAACTACTCATTTGAGCTTTCCCCATCCTATGCTCATGGTCCAACAATGCCAGCTCTTGTTCTACAACCACAATATGGTGCTCCTATGATTGTTCGAAAGCTAGAATGATCAATAAATCACTTCTATCTTGTCAACTATAAGCACAATTACAGGATGCTTAAATTTAATGTTTCAATCAGTTTATTGGTTGGTTAATGGTTACTGAATTTAGACAAATCTCTTCGAGTTTTTTATATGTTATGAAGCTAACTATGCTCCTCTGTTTCCTCCTCTTAAAATAAACAAGAACCAATTACGCTCCTTCATTTACTG</gDNA_template>
            <first_frame> K  L  A  I  N  V  F  P  W  L  R :   F  V  P  T  K  T  N  R  R  R  L  Y  I  Y  N  T  V  R  S  S  L  K  S  I  I  E  K  R  E  K  E  V  Q  S  G  K  S  H  N  E  D  L  L  G  L  L  M  K  S  N  Q  E  E  Q  Q  G  N  K  N  S  N  K  G  M  S  T  E  D  M  I  E  E  C  N  S  F  Y  F  A  G  Q  E  T  T  A  T  L  L  T  W  T  A  I  V  L  T  M  H  P  D  W  Q  E  K  A  R  K  E  V  L  Q  V  I  G  K  D  E  P  K  F  D  Q  L  N  H  L  K  I  :  V  T  M  I  L  H  E  V  L  R  L  Y  P  S  G  S  L  V  R  E  T  N  K  K  T  K  L  G  G  Y  T  I  P  A  G  A  Q  L  L  V  P  L  Q  T  I  H  R  D  T  E  A  W  G  E  D  A  L  I  F  N  P  E  R  F  S  E  G  V  S  K  A  S  K  D  L  M  Y  F  P  F  G  W  G  S  R  I  C  L  G  M  N  V  S  M  I  Q  G  K  L  V  L  A  K  I  L  Q  N  Y  S  F  E  L  S  P  S  Y  A  H  G  P  T  M  P  A  L  V  L  Q  P  Q  Y  G  A  P  M  I  V  R  K  L  E  *  S  I  N  H  F  Y  L  V  N  Y  K  H  N  Y  R  M  L  K  F  N  V  S  I  S  L  L  V  G  *  W  L  L  N  L  D  K  S  L  R  V  F  Y  M  L  *  S  *  L  C  S  S  V  S  S  S  *  N  K  Q  E  P  I  T  L  L  H  L  L </first_frame>
            <second_frame>  S  L  L  L  M  S  S  H  G  *   : G  L  C  Q  R  K  L  I  G  E  D  C  T  S  I  T  Q  F  V  V  R  *  N  Q  S  L  R  N  E  R  K  R  Y  N  L  E  N  H  T  T  K  I  Y  W  V  C  *  *  N  L  I  R  K  N  S  K  G  I  R  T  R  I  K  E  *  V  Q  R  I  *  *  K  S  V  T  L  S  T  L  L  V  K  R  L  L  Q  L  C  *  H  G  L  Q  L  C  *  L  C  I  Q  I  G  K  R  K  L  G  K  K  F  F  K  S  L  E  K  M  N  L  S  L  I  N  S  T  T  *  R  L :   *  Q  *  F  C  T  R  F  *  G  S  I  H  Q  V  L  S  L  E  K  Q  T  K  K  Q  S  S  E  G  I  Q  S  Q  Q  V  R  N  F  *  C  L  Y  K  Q  F  I  G  I  Q  R  H  G  V  K  M  H  *  F  S  I  Q  K  G  F  Q  K  G  Y  Q  K  H  Q  R  T  *  C  T  S  H  L  V  G  V  L  G  Y  A  L  E  *  M  F  R  *  F  K  G  S  L  F  W  L  K  S  Y  R  T  T  H  L  S  F  P  H  P  M  L  M  V  Q  Q  C  Q  L  L  F  Y  N  H  N  M  V  L  L  *  L  F  E  S  *  N  D  Q  *  I  T  S  I  L  S  T  I  S  T  I  T  G  C  L  N  L  M  F  Q  S  V  Y  W  L  V  N  G  Y  *  I  *  T  N  L  F  E  F  F  I  C  Y  E  A  N  Y  A  P  L  F  P  P  L  K  I  N  K  N  Q  L  R  S  F  I  Y   </second_frame>
            <third_frame>   A  C  Y  *  C  L  P  M  V  K  :  V  C  A  N  E  N  *  *  E  K  I  V  H  L  *  H  S  S  *  F  V  K  I  N  H  *  E  T  R  E  R  G  T  I  W  K  I  T  Q  R  R  S  I  G  F  V  D  E  I  *  S  G  R  T  A  R  E  *  E  L  E  *  R  N  E  Y  R  G  Y  D  R  R  V  *  L  F  L  L  C  W  S  R  D  Y  C  N  F  V  N  M  D  C  N  C  V  D  Y  A  S  R  L  A  R  E  S  *  E  R  S  S  S  S  H  W  K  R  *  T  *  V  *  S  T  Q  P  P  K  D   : C  N  N  D  F  A  R  G  S  E  A  L  S  I  R  F  S  R  *  R  N  K  Q  K  N  K  A  R  R  V  Y  N  P  S  R  C  A  T  F  S  A  S  T  N  N  S  S  G  Y  R  G  M  G  *  R  C  I  N  F  Q  S  R  K  V  F  R  R  G  I  K  S  I  K  G  P  D  V  L  P  I  W  L  G  F  S  D  M  P  W  N  E  C  F  D  D  S  R  E  A  C  F  G  *  N  L  T  E  L  L  I  *  A  F  P  I  L  C  S  W  S  N  N  A  S  S  C  S  T  T  T  I  W  C  S  Y  D  C  S  K  A  R  M  I  N  K  S  L  L  S  C  Q  L  *  A  Q  L  Q  D  A  *  I  *  C  F  N  Q  F  I  G  W  L  M  V  T  E  F  R  Q  I  S  S  S  F  L  Y  V  M  K  L  T  M  L  L  C  F  L  L  L  K  *  T  R  T  N  Y  A  P  S  F  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1" stop="32"/>
                    <exon start="107" stop="491"/>
                    <exon start="575" stop="1000"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLAINVFPWLRFVPTKTNRRRLYIYNTVRSSLKSIIEKREKEVQSGKSHNEDLLGLLMKSNQEEQQGNKNSNKGMSTEDMIEECNSFYFAGQETTATLLTWTAIVLTMHPDWQEKARKEVLQVIGKDEPKFDQLNHLKIVTMILHEVLRLYPSGSLVRETNKKTKLGGYTIPAGAQLLVPLQTIHRDTEAWGEDALIFNPERFSEGVSKASKDLMYFPFGWGSRICLGMNVSMIQGKLVLAKILQNYSFELSPSYAHGPTMPALVLQPQYGAPMIVRKLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="669" PGL_stop="221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="669" e_stop="221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="669" e_stop="221" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="669" stop="261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="542" stop="221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGTATACCCTCCGAGCTTTGTTTTTTTGTTTGTTTCTCTAACGAGAGAACCTGATGGATAGAGCCTCAGAACCTCGTGCAAAATCATTGTTACCTACAGTACCATTTTCCTCCTATCAAACAAATTAATAATTAGATAATAACGGAATAAAAAGTGTGATGGATGGGAAATCTTACAATCTTTAGGTGGTTGAGTTGATCAAACTTAGGTTCATCTTTTCCAATGACTTGAAGAACTTCTTTCCTAGCTTTCTCTTGCCAATCTGGATGCATAGTCAACACAATTGCAGTCCATGTTAACAAAGTTGCAGTAGTCTCTTGACCAGCAAAGTAGAAAGAGTTACACTCTTCTATCATATCCTCTGTACTCATTCCTTTATTCGAGTTCTTATTCCCTTGCTGTTCTTCCTGATTAGATTTCATCAACAAACCCAATAGATCTTCGTTG</gDNA_template>
            <first_frame> I  V  Y  P  P  S  F  V  F  L  F  V  S  L  T  R  E  P  D  G  *  S  L  R  T  S  C  K  I  I  V  T  Y  S  T  I  F  L  L  S  N  K  L  I  I  R  *  *  R  N  K  K  C  D  G  W  E  I  L  Q  S  L  G  G  *  V  D  Q  T  *  V  H  L  F  Q  *  L  E  E  L  L  S  *  L  S  L  A  N  L  D  A  *  S  T  Q  L  Q  S  M  L  T  K  L  Q  *  S  L  D  Q  Q  S  R  K  S  Y  T  L  L  S  Y  P  L  Y  S  F  L  Y  S  S  S  Y  S  L  A  V  L  P  D  *  I  S  S  T  N  P  I  D  L  R   </first_frame>
            <second_frame>  L  Y  T  L  R  A  L  F  F  C  L  F  L  *  R  E  N  L  M  D  R  A  S  E  P  R  A  K  S  L  L  P  T  V  P  F  S  S  Y  Q  T  N  *  *  L  D  N  N  G  I  K  S  V  M  D  G  K  S  Y  N  L  *  V  V  E  L  I  K  L  R  F  I  F  S  N  D  L  K  N  F  F  P  S  F  L  L  P  I  W  M  H  S  Q  H  N  C  S  P  C  *  Q  S  C  S  S  L  L  T  S  K  V  E  R  V  T  L  F  Y  H  I  L  C  T  H  S  F  I  R  V  L  I  P  L  L  F  F  L  I  R  F  H  Q  Q  T  Q  *  I  F  V  </second_frame>
            <third_frame>   C  I  P  S  E  L  C  F  F  V  C  F  S  N  E  R  T  *  W  I  E  P  Q  N  L  V  Q  N  H  C  Y  L  Q  Y  H  F  P  P  I  K  Q  I  N  N  *  I  I  T  E  *  K  V  *  W  M  G  N  L  T  I  F  R  W  L  S  *  S  N  L  G  S  S  F  P  M  T  *  R  T  S  F  L  A  F  S  C  Q  S  G  C  I  V  N  T  I  A  V  H  V  N  K  V  A  V  V  S  *  P  A  K  *  K  E  L  H  S  S  I  I  S  S  V  L  I  P  L  F  E  F  L  F  P  C  C  S  S  *  L  D  F  I  N  K  P  N  R  S  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0025K11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="6159" PGL_stop="5564"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6159" e_stop="5925"/>
            <exon e_start="5849" e_stop="5564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.697" e_score="0.889"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.889">
            <gDNA_exon_boundary e_start="6159" e_stop="5925" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.697">
            <gDNA_intron_boundary i_start="5924" i_stop="5850" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="5849" e_stop="5564" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6159" stop="5925"/>
              <exon start="5849" stop="5564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTATATATCAGATAACATCATAAAATCAACTAATATCCTTAGCCTGCAGCATTTACAATTACCATAACCCTTGGTTACAACACCAAGCTCATCAATGAGGACTCACGCCTCCTCATCATACTCATTTGGGAATTAGATTCATTAGATTGAATATATTAACATCTTTCAAGATTCATTATCTTTATTCCTCTCGTGTCGGTACGTGACACTCCGCTCCTCAATATACTATCCTGG : TACCGGAATGTGGCACCCGATCCATATTCTATCCTGGTACCAGAGCGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTAACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCCTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAAG</gDNA_template>
            <first_frame> S  I  Y  Q  I  T  S  *  N  Q  L  I  S  L  A  C  S  I  Y  N  Y  H  N  P  W  L  Q  H  Q  A  H  Q  *  G  L  T  P  P  H  H  T  H  L  G  I  R  F  I  R  L  N  I  L  T  S  F  K  I  H  Y  L  Y  S  S  R  V  G  T  *  H  S  A  P  Q  Y  T  I  L   : V  P  E  C  G  T  R  S  I  F  Y  P  G  T  R  A  W  H  P  I  H  I  L  S  W  C  R  N  V  T  L  R  S  S  Y  T  I  L  V  P  E  R  G  T  R  S  I  F  Y  P  G  V  G  T  *  H  S  D  P  H  I  L  S  W  Y  R  N  V  A  P  D  P  L  I  S  L  L  S  F  I  K  P  S  F  I  P  R  H  H  H  *  Q  S  R  L   </first_frame>
            <second_frame>  V  Y  I  R  *  H  H  K  I  N  *  Y  P  *  P  A  A  F  T  I  T  I  T  L  G  Y  N  T  K  L  I  N  E  D  S  R  L  L  I  I  L  I  W  E  L  D  S  L  D  *  I  Y  *  H  L  S  R  F  I  I  F  I  P  L  V  S  V  R  D  T  P  L  L  N  I  L  S  W  :  Y  R  N  V  A  P  D  P  Y  S  I  L  V  P  E  R  G  T  R  S  I  F  Y  P  G  V  G  T  *  H  S  D  P  H  I  L  S  W  Y  R  N  V  A  P  D  P  Y  S  I  L  V  S  E  R  N  T  P  I  L  I  Y  Y  P  G  T  G  T  W  H  P  I  P  *  S  H  Y  F  R  S  S  S  P  L  L  Y  Q  G  I  I  I  N  K  V  D  *  </second_frame>
            <third_frame>   Y  I  S  D  N  I  I  K  S  T  N  I  L  S  L  Q  H  L  Q  L  P  *  P  L  V  T  T  P  S  S  S  M  R  T  H  A  S  S  S  Y  S  F  G  N  *  I  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  S  C  R  Y  V  T  L  R  S  S  I  Y  Y  P  G :   T  G  M  W  H  P  I  H  I  L  S  W  Y  Q  S  V  A  P  D  P  Y  S  I  L  V  S  E  R  D  T  P  I  L  I  Y  Y  P  G  T  G  T  W  H  P  I  H  I  L  S  W  C  R  N  V  T  L  R  S  S  Y  T  I  L  V  P  E  R  G  T  R  S  P  N  L  T  T  F  V  H  Q  A  L  F  Y  T  K  A  S  S  L  T  K  *  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6013" stop="5925"/>
                    <exon start="5849" stop="5570"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEYINIFQDSLSLFLSCRYVTLRSSIYYPGTGMWHPIHILSWYQSVAPDPYSILVSERDTPILIYYPGTGTWHPIHILSWCRNVTLRSSYTILVPERGTRSPNLTTFVHQALFYTKASSLTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="7025" PGL_stop="7578"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7025" e_stop="7578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="7025" e_stop="7578" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7025" stop="7578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTATTAAGAGAAGGGGAGGATGGGGAGAATGAACAATTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAAATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCACCACCTCAGACTTCGGAGGTACAACATGCGGCTGCTGCGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAACATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGTTGAATCTGAGGATACCTATGATTTTCTGGTTGACTGTCATGATCTACTACACAAGATGGGTATAGTATAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGATGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGACATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  I  K  R  R  G  G  W  G  E  *  T  I  A  K  *  G  I  A  T  P  T  Y  P  R  N  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  R  P  D  T  S  S  V  F  C  T  T  T  S  D  F  G  G  T  T  C  G  C  C  G  S  P  H  G  C  S  I  G  N  R  H  V  S  S  S  D  Y  R  A  Y  N  D  K  *  S  T  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  Y  L  *  F  S  G  *  L  S  *  S  T  T  Q  D  G  Y  S  I  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  *  *  V  S  T  N  R  G  T  T  Y  D  L  D  I  I   </first_frame>
            <second_frame>  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  L  R  E  G  E  D  G  E  N  E  Q  L  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  P  P  Q  T  S  E  V  Q  H  A  A  A  A  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  V  E  S  E  D  T  Y  D  F  L  V  D  C  H  D  L  L  H  K  M  G  I  V  *  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  D  E  C  Q  P  I  E  A  P  P  M  T  W  T  S  F  </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  R  L  R  K  Y  *  E  K  G  R  M  G  R  M  N  N  C  K  M  R  N  C  H  P  N  L  P  Q  K  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  H  H  L  R  L  R  R  Y  N  M  R  L  L  R  L  P  A  W  M  F  H  W  K  *  A  R  F  L  V  *  L  Q  G  L  *  *  Q  M  I  N  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  I  P  M  I  F  W  L  T  V  M  I  Y  Y  T  R  W  V  *  Y  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  M  S  V  N  Q  *  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7026" stop="7463"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSGTRAVTPPPTEEVLREGEDGENEQLQNEELPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPPPQTSEVQHAAAAAPRMDVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGVESEDTYDFLVDCHDLLHKMGIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="7652" PGL_stop="9095"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7652" e_stop="7838"/>
            <exon e_start="8582" e_stop="9095"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.888"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.888">
            <gDNA_exon_boundary e_start="7652" e_stop="7838" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7839" i_stop="8581" i_length="743"/>
          </intron>
          <exon e_serial="2" e_score="0.909">
            <gDNA_exon_boundary e_start="8582" e_stop="9095" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7652" stop="7838"/>
              <exon start="8582" stop="9095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATTCCACCCAACTATGTTTCAGTCCACAAGAACGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAATTGCGGATTTCAGCCTTGCAGGTAGCGGCTACGGCAAAATCTTTTCAAGAAGTGGTAGACTTC : GATGTAATTTTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGTTAAAATGGTGATATTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAAACCGGTGCGTATCATCTCATTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTTGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTAGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGGGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  P  V  F  H  P  T  M  F  Q  S  T  R  T  D  S  P  F  C  E  G  V  E  I  R  I  A  D  F  S  L  A  G  S  G  Y  G  K  I  F  S  R  S  G  R  L   : R  C  N  F  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  I  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  T  G  A  Y  H  L  I  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  P  *  V  S  R  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  G  V  K  S  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  E  E  E  G  W  E  F  S  N  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  S  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  V  K  M  V  I  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  K  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  L  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  P  G  I  P  P  N  Y  V  S  V  H  K  N  G  F  A  V  L  *  R  G  *  D  Q  N  C  G  F  Q  P  C  R  *  R  L  R  Q  N  L  F  K  K  W  *  T  S :   M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  W  *  Y  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  N  R  C  V  S  S  H  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  *  L  S  R  F  R  W  S  V  S  F  *  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  G  S  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7653" stop="7838"/>
                    <exon start="8582" stop="9094"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVTAYEAKFRALSRYSTQLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEVVDFDVILGMTWLSPQFAILDCNVKMVILAKPGTDPLVWEGDYTSKPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPLIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="9667" PGL_stop="8317"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9667" e_stop="8317"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="9667" e_stop="8317" e_length="1351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9667" stop="8955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9667" stop="9072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9667" stop="9142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9596" stop="8917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9596" stop="9238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9147" stop="8489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9078" stop="8317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9078" stop="8418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8675" stop="8345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAAGCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAATCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATGTCATCAATAAATACGATTACAAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACACAGCAGGGGCATTCGTAAGACCAAAATACATCACTACAAATTCGTAATGCCCATACCTTGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGATACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAACTGCCGGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCTAGAAACTCACGGACCACCGAAACCGACTCAATCAAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAATGAGATGATACGCACCGGTTTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATATCACCATTTTAACATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCATAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGCAATTCACAATGTAAATCAAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTTAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGAT</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  K  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  N  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  Y  V  I  N  K  Y  D  Y  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  H  S  R  G  I  R  K  T  K  I  H  H  Y  K  F  V  M  P  I  P  C  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  *  L  P  V  V  Y  A  H  S  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  P  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  *  K  L  T  D  H  R  N  R  L  N  Q  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  *  D  D  T  H  R  F  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  Y  H  H  F  N  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  Q  F  T  M  *  I  K  T  I  S  K  C  G  R  Y  I  *  K  C  R  A  R  V  K  Q  Y  K  S  H  A  I  T  N  R  K  I  T  C  D  D  S  I  *  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  S  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  I  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  T  A  G  A  F  V  R  P  K  Y  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  I  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  K  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  N  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  I  T  I  L  T  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  K  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  I  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  S  R  P  L  A  N  A  E  D  T  Y  E  N  V  E  P  G  L  N  N  T  K  A  M  Q  S  Q  T  E  R  L  P  V  M  T  A  S  D </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  N  S  *  L  N  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  A  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  S  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  C  H  Q  *  I  R  L  Q  R  D  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  N  T  S  L  Q  I  R  N  A  H  T  L  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  Y  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  L  T  A  G  S  L  C  T  F  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  P  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  L  E  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  M  R  *  Y  A  P  V  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  I  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  K  L  H  Q  N  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  P  *  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  A  I  H  N  V  N  Q  D  H  *  Q  M  R  K  I  H  M  K  M  *  S  Q  G  *  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9502" stop="9164"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGINLFLPQHFQYHSQMLLMFLLTFRVYQYVINKYDYKEIQIWLKNPVHQTHEHSRGIRKTKIHHYKFVMPIPCSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8940" stop="8695"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIKGTWVVSSLRCAKKAKHPLLTIFLARRNEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8544" stop="8317"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPIKFTKQDLYTFSTTTDSPTGVETRIGISSNSQCKSRPLANAEDTYENVEPGLNNTKAMQSQTERLPVMTASD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="11147" PGL_stop="10971"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11147" e_stop="10971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="11147" e_stop="10971" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11147" stop="10971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTTCTCCTATATAATTCCTCGAATGGGGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAACATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  L  Y  N  S  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  N  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  F  S  Y  I  I  P  R  M  G  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  T  H  E  T  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  S  P  I  *  F  L  E  W  G  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0025K11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="12364" PGL_stop="11803"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12364" e_stop="11803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="12364" e_stop="11803" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12364" stop="11807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12364" stop="11807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12364" stop="11908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12363" stop="11803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12363" stop="11816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12363" stop="11889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATTAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCGCCCGTCGTGCCTGCGACAGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCATCACGCCCGTGACGATCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTCAGAATTTCTAAGTATTTTGAAACGAGACCCTTCGACGGTCTGTCGTGCTCATGACGGTCCGTCGTGGGTTTCGTCGTCTCAACCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACATGTCATTACATTA</gDNA_template>
            <first_frame> I  D  S  P  S  L  S  F  C  S  F  L  F  L  I  Q  T  L  F  L  L  P  *  L  A  Y  N  *  E  L  K  M  A  I  I  T  H  *  F  T  Q  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  K  P  T  N  F  I  I  K  V  G  I  V  Q  N  V  P  *  N  V  *  R  N  P  T  Q  T  G  I  T  Q  P  V  T  A  P  V  V  P  A  T  V  R  P  A  G  R  R  K  V  Q  R  L  N  F  H  Q  R  V  C  D  G  P  S  R  P  *  R  S  V  L  P  F  R  Y  E  V  Q  R  V  N  F  Q  Y  P  I  S  E  F  L  S  I  L  K  R  D  P  S  T  V  C  R  A  H  D  G  P  S  W  V  S  S  S  Q  P  V  F  P  E  I  K  S  A  A  Q  N  D  *  T  C  H  Y  I  </first_frame>
            <second_frame>  S  I  L  L  L  S  L  S  V  L  F  F  F  L  F  K  P  S  F  F  Y  P  N  *  H  I  I  K  N  *  R  W  Q  *  *  P  T  N  L  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  *  E  *  S  K  T  S  L  K  T  C  K  E  I  R  P  R  L  G  L  R  N  L  *  R  R  P  S  C  L  R  Q  S  V  L  Q  V  V  A  R  F  R  D  S  I  S  T  K  E  S  V  T  V  H  H  A  R  D  D  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  N  F  *  V  F  *  N  E  T  L  R  R  S  V  V  L  M  T  V  R  R  G  F  R  R  L  N  L  F  F  Q  K  *  N  L  L  L  K  T  T  K  H  V  I  T  L </second_frame>
            <third_frame>   R  F  S  F  S  L  F  L  F  F  S  F  S  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  N  N  P  L  I  Y  S  R  L  P  L  L  T  P  K  *  L  D  L  L  T  *  T  H  *  L  Y  N  *  S  R  N  S  P  K  R  P  L  K  R  V  K  K  S  D  P  D  W  D  Y  A  T  C  D  G  A  R  R  A  C  D  S  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  P  K  S  L  *  R  S  I  T  P  V  T  I  R  P  A  I  P  L  R  S  S  E  S  Q  F  S  V  P  N  F  R  I  S  K  Y  F  E  T  R  P  F  D  G  L  S  C  S  *  R  S  V  V  G  F  V  V  S  T  C  F  S  R  N  K  I  C  C  S  K  R  L  N  M  S  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0025K11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 150 chains have been computed
$ 
$ memory statistics:
$ 85368 bytes spliced alignments in total
$ 43 spliced alignments have been stored
$ 1985 bytes was the average size of a spliced alignment
$ 14080 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1760 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 179 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-21 23:10:15
-->
