<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 09:16:27"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0062O11-RYHjf/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-cNniGk/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cNniGk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340177" ref_strand="+" ref_description="SGN-U340177        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | HAC13 protein (HAC13), identical to HAC13 (Arabidopsis thaliana) gi:21105767:gb:AAM34782; contains Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin family | chr1:11846227-11856241 REVERSE | Aliases: F6N18.13, F6N18_13(evalue: 3e-13, score=70.9) genbank/nr: gi|6714281|gb|AAF25977.1| F6N18.13 [Arabidopsis thaliana] (evalue: 2e-11, score=70.9)">
      <seq>ctgtaggcacgagcagaaagcactgatctggaaaagactacaggaaaatctatgggttctattgatctcttggatcagtcccagatcttctcaaagaaagtcatccaaaaaagtggaaccaagaatctgatggtcgacgttcatgaggatgataattccagttcaaaggccaaagttctgaaggtcaaatgtgcttcaaccgacaaacttcctgataaacctactcctgcgacctcacttaattctgacataccagtgacttcggatgctgaaattggaactttaccaccccccataaaatttaataaaattaagttttcaaataagatgagagccgaggatgattccaatgaagcttacaagccttccattctggtaaggccaccaatggagactgcagagtcacatcgcagcaagaaaattgtaattaagcaactcaaggactcaacaagtgtggatgaaggcttcctggatggaagcagtggcatggagtacaggaagacaaagaaaatcaacgaattgtcgtacatggggcagcaagagagggaatacttatatgaagagactttaggaaggaaaaaaatggatgataaacgattatgggaagaagaggagaggaggagaattgctgtcagacagagagaagaaagagccaagatatatgagcgacagaaggcattagaagaacaagagaaattagcggcgattgaaagctatcaagacgccataagaagagaaagggaggaagaagaacgtcttaaagaaaaaaagaagaaaaagaagaagactgaaataagagatgattacttggatgattttcttcccagaagaaacgacagaaggataccagatcgagacagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-RYHjf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="27476" stop="28933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27775" g_stop="28633" g_length="859"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="862" r_length="862" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-U340177" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27775" e_stop="28633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGGCACGAGCAGAAAGCACTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTATTGATATCTTGGATCAGTCCCAGATCTTCTCAAAGAAA---ATCCAAAAAAGTGGAACCAAGAATCTGATGGTCGACGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGCTTCAACCGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATACCAGTGACTTCGGATGCTGAAATTGGAACTTTACCACCCCCCATAAAATTTAATAAAATTAAGTTTTCAAATAAGATGAGAGCCGAGGATGATTCCAATGAAGCTTACAAGCCTTCCATTCTGGTAAGGCCACCAATGGAGACTGCAGAGTCACATCGCAGCAAGAAAATTGTAATTAAGCAACTCAAGGACTCAACAAGTGTGGATGAAGGCTTCCTGGATGGAAGCAGTGGCATGGAGTACAGGAAGACAAAGAAAATCAATGAATTGTCGTACATGGGGCAGCAAGAGAGGGAATACTTATATGAAGAGACTTTAGGAAGGAAAAAAATGGATGATAAACGATTATGGGAAGAAGAGGAGAGGAGGAGAATTGCTGTCAGACAGAGAGAAGAAAGAGCCAAGATATATGAGCGACAGAAGGCATTAGAAGAACAAGAGAAATTAGCGGCGATTGAAAGCTATCAAGACGCCATAAGAAGAGAAAGGGAGGAAGAAGAACGTCTTAAAGAAAAAAAGAAGAAAAAGAAGAAGACTGAAATAAGAGATGATTACTTGGATGATTTTCTTCCCAGAAGAAACGACAGAAGGATACCAGATCGAGACAGAT</genome_strand>
        <mrna_strand>CTGTAGGCACGAGCAGAAAGCACTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTATTGATCTCTTGGATCAGTCCCAGATCTTCTCAAAGAAAGTCATCCAAAAAAGTGGAACCAAGAATCTGATGGTCGACGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGCTTCAACCGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATACCAGTGACTTCGGATGCTGAAATTGGAACTTTACCACCCCCCATAAAATTTAATAAAATTAAGTTTTCAAATAAGATGAGAGCCGAGGATGATTCCAATGAAGCTTACAAGCCTTCCATTCTGGTAAGGCCACCAATGGAGACTGCAGAGTCACATCGCAGCAAGAAAATTGTAATTAAGCAACTCAAGGACTCAACAAGTGTGGATGAAGGCTTCCTGGATGGAAGCAGTGGCATGGAGTACAGGAAGACAAAGAAAATCAACGAATTGTCGTACATGGGGCAGCAAGAGAGGGAATACTTATATGAAGAGACTTTAGGAAGGAAAAAAATGGATGATAAACGATTATGGGAAGAAGAGGAGAGGAGGAGAATTGCTGTCAGACAGAGAGAAGAAAGAGCCAAGATATATGAGCGACAGAAGGCATTAGAAGAACAAGAGAAATTAGCGGCGATTGAAAGCTATCAAGACGCCATAAGAAGAGAAAGGGAGGAAGAAGAACGTCTTAAAGAAAAAAAGAAGAAAAAGAAGAAGACTGAAATAAGAGATGATTACTTGGATGATTTTCTTCCCAGAAGAAACGACAGAAGGATACCAGATCGAGACAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cNniGk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327395" ref_strand="+" ref_description="SGN-U327395        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | HAC13 protein (HAC13), identical to HAC13 (Arabidopsis thaliana) gi:21105767:gb:AAM34782; contains Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin family | chr1:11846227-11856241 REVERSE | Aliases: F6N18.13, F6N18_13(evalue: 3e-48, score=188) genbank/nr: gi|6714281|gb|AAF25977.1| F6N18.13 [Arabidopsis thaliana] (evalue: 2e-46, score=188)">
      <seq>ttcgagtctggaaggcatgctaaagagcatgcaccaccaacaaagcgccgaagagggggagaggttggtttgtcaaatattttagaagaaattgttgatacactgaagaacaatgtgaacgtatcatacctcttcttgaagccagtgacccgaaaggaagctccagattatcacaagtatgtaaaacgccctatggacctatctaccatcaaagagaaagccaggaaactggaatataaaaaccgtgggcaattcaggcatgatgtggcacagatcactatcaatgcacatttgtacaatgatgggcgcaacccaggtattcctccccttgcggatcagcttctagagatttgtgactacttgctggaagagaatgagtccatcttagctgaagctgaatctggtattgagtgatgatacttcatatttgaaccttgtttctgttcgattttaagttcaattaagcaagctttcattggttactcacaatctagtgtctattgttcagcgatctaaaggatagatcttctagatgtgtcagttgcagccaccccaacatatgtatcagataaacaagacgcgactgaagggattattgtatcctaactgtataatgagatttagtagctgatgattctgtgtaccgaccatgttgttttaatccatggtcaaggaaggcaacgcgctgatgggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-RYHjf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="28354" stop="30442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28654" g_stop="28716" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28717" i_stop="29509" i_length="793">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29510" g_stop="30142" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="696" r_length="633" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-U327395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28654" e_stop="28716"/>
          <exon e_start="29510" e_stop="30142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGTCTGGAAGGCATGCTAAAGAGCATGCACCACCAACAAAGCGCCGAAGAGGGGGAGAGGTAACTAAATCTATTATGCTTGTTTTTGTCTCATCTTCTGCAGGTAATAATAGTGATAGTCAATTACTATGTCCACAGATGCCACAGATCTAGATCAACCGTTACTATAGCCACAGATGCCACAGATCTAGATCATATTATCCTTCTTGCATTTTGTGTTATGTCCGAATGGTCTAACTGACCTTTCTCTCATGTTCTTGTTGACTAATTTGGTTGCATGGCGGTGTTCATAGAATTTTCCAATAAGAAGTGAATAGTACTGGGTAAGAGAATACTCGTCTAGGTACCGTCATGGTGGGTGGAAGTTTCTAATTAGTTCTCTTTTTCGAAAAACTGAGACTCATGCCTCCTTGTATGTGAAATAGAAAGGTAATAAGATAAAGGTCTACTTACTCTATAGGAATATAGATCGCTACTCTAGTAAGTGTTGTTTGAACAATCATTTAGTCAAACAATAACATACTGGCTGGTCTGGTTTTTCTGATACGGCTGATTGTCACATCTTAAGCAATATACATTTTCTGTATGCATAATTCTGTCATTATTGGTCAATTAGCTGCAGTTAGAAGTAGAACTGCAAGTCTTAAGCAATATACATTTTCTGTATGCATAATTCTGTCATTAGTGGTCAATTAACTGCAGTTAGAAGTAGAACTGCAAGATTTTAGCAAGAGAACCTCTGATCTTATTTGATCTGTTCATTCTAAGAGTTGCCTACTTCTTTTATAATACAAAGGGACAGTAGTACAGTAGTTTTTTCATTTAACTGAGATGTGGTTGAATTTGTTTGAAGGTTGGTTTGTCAAATATTTTAGAAGAAATTGTTGATACACTGAAGAACAATGTGAACGTATCATACCTCTTCTTGAAGCCAGTGACCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAACGCCCTATGGACCTATCTACCATCAAAGAGAAAGCCAGGAAACTGGAATATAAAAACCGTGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGATGGGCGCAACCCAGGTATTCCTCCCCTTGCGGATCAGCTTCTAGAGATTTGTGACTACTTGCTGGAAGAGAATGAGTCCATCTTAGCTGAAGCTGAATCTGGTATTGAGTGATGATACTTCATATTTGAACCTTGTTTCTGTTCGATTTTAAGTTCAATTAAGCAAGCTTTCATTGGTTACTCACAATCTAGTGTCTATTGTTCAGCGATCTAAAGGATAGATCTTCTAGATGTGTCAGTTGCAGCCACCCCAACATATGTATCAGATAAACAAGACGCGACTGAAGGGATTATTGTATCCTAACTGTATAATGAGATTTAGTAGCTGATGATTCTGTGTACCGACCATGTTGTTTTAATCCATGGTCAAGGAAGGCAACGCGCTGATGGGTGT</genome_strand>
        <mrna_strand>TTCGAGTCTGGAAGGCATGCTAAAGAGCATGCACCACCAACAAAGCGCCGAAGAGGGGGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTTTGTCAAATATTTTAGAAGAAATTGTTGATACACTGAAGAACAATGTGAACGTATCATACCTCTTCTTGAAGCCAGTGACCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAACGCCCTATGGACCTATCTACCATCAAAGAGAAAGCCAGGAAACTGGAATATAAAAACCGTGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGATGGGCGCAACCCAGGTATTCCTCCCCTTGCGGATCAGCTTCTAGAGATTTGTGACTACTTGCTGGAAGAGAATGAGTCCATCTTAGCTGAAGCTGAATCTGGTATTGAGTGATGATACTTCATATTTGAACCTTGTTTCTGTTCGATTTTAAGTTCAATTAAGCAAGCTTTCATTGGTTACTCACAATCTAGTGTCTATTGTTCAGCGATCTAAAGGATAGATCTTCTAGATGTGTCAGTTGCAGCCACCCCAACATATGTATCAGATAAACAAGACGCGACTGAAGGGATTATTGTATCCTAACTGTATAATGAGATTTAGTAGCTGATGATTCTGTGTACCGACCATGTTGTTTTAATCCATGGTCAAGGAAGGCAACGCGCTGATGGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cNniGk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U316446" ref_strand="+" ref_description="SGN-U316446        Tomato 200607 #1 [27 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin-binding protein, similar to calmodulin-binding protein TCB60 GI:1698548 from (Nicotiana tabacum) | chr5:23331942-23335351 REVERSE | Aliases: MUA2.16, MUA2_16(evalue: 0, score=805) genbank/nr: gi|1698548|gb|AAB37246.1| calmodulin-binding protein (evalue: 0, score=970)">
      <seq>aaactgttaaaactaataaagacagtgttcagttcttgagagagaaagagaaatctcttaggttcaactaaagtttcaagaattaccaatcagggaaaaaagaaggtatttgtctaaatgcagactaggtatatggagaggacaaaatctatgaagaggagcttggagggtgatgatgaacagcctcctgagcgtaaaagacctgctttagctagtgttattgtggaagctctcaaggtggatagtcttcaaaagctctgctcatctttggaaccgattcttcggagagttgttagtgaagaggtggaacgagcattggctaagttaggccctgccagaattgctggaaggtcatctcctaagagaattgaagggcccgatggaagtaacttgcagcttcagtttaggtctaggctatctttgcctctgttcactggaggcaaagtagaaggagagcatggtgctgctatccatgttgtcttaattgacacaactactggccatcttgtgactgctggtcctgaatcatgtataaaactggacgttgttgtgctagaaggtgatttcaacaatgaagaagatgaaggatggacacaagaagaatttgacggtcatgttgttaaagagcgtgaaggaaagagacctcttttaactggtgacttgcaaattacactcaaggaaggcgttggaactttgggggatctcacatttacagacaattcaagttggataaggagcaggaagttcagacttggcatgaaagttgcttctggatattgtgaaggagtacgcatacgagaagccaagactgaggctttcactgttaaagatcaccgtggagaattgtacaagaaacattatccaccagctctaaatgatgatgtctggagattggagaagattggcaaggatggttctttccacaagaggctaaacaaggccgggatatttactgttgaagacttccttaggcttgtggtccgagacccacagaaactaagaagtatccttggaagtggtatgtcaaataagatgtgggaggctctaatagagcatgcaaagacctgtgtcttgagtgggaagctttatgtctattattctgatgattcgaggaacgttggtgttgttttcaacaatatttatgagctgaatggccttatagctggtgaacaatactattcggcagattcactttcagacagccagaaggtatacgtagattctttggtcaagaaggcatatgataattggaatcaagtcgttgaatatgatggcaagtcatttctgaacatcaagcaaaatcaaaatccaagctcttctaggaacgagcttcctgttgggccagtggattaccccaacaccttggttaatcagcttccgcagtcacgccatcctgttccagttcaatccgagcaatcttctatggatcccaacttgctaattggaggttcaggttacaatgacaacatggttgctaggatgcctacccaaagtcctatgatgaattctaattcccgctcacagtttgagagcactccatttgcgcctcagcaccaaataaccagcagtcatcagctccagagtacgagatatgacaacaatgttggcctggctcttggtcctccacaatcatcttcattccagacaattacctcatctctcccacaaaccaatcttaatccttttgatgattggtcgcacaacagggacaagggagttgacgaattcttgtctgaggaggaaattcgaatgagaagcaatgaaattcttgagaatgatgatatgcaacatttgctaagacttttcagcatgggaggccatggttctataaatgtgcctgaagatggatatggtttcccatctttcatgccttcgccatctcctagtttcagttatgatgaagaccgcacacggccaggaaaagctgttgttggttggctgaaaattaaggctgcaatgaggtgggggttctttgtgcggaagaaggcagctgagaggcgtgcacagctcgtggaactggatgatgaataaaatctggtgtggaaacattagggcatttagacttaaccatcgaccatttgaataactattcacaaggccgtggtcatgcaggcccgagtaattagctttcgactctagacggtatattttccgagggattagtcaattcgattgtttttcttttttcatgtacagaagcctgtacagtaaattctcttttaacactctcattgttaactccatcgtgcttactctctttatctgtttcaagatgtaatgtaatgtataagtcctgcagacccaagggaaatatgctttcaagaacacctgtgtgttgaattctatatgaacttttatggtaaaaatgatgctgtttggctttgaaaaaaaaaaaaaaaaaaaactcagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-RYHjf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="31427" stop="39535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31727" g_stop="31819" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31820" i_stop="32031" i_length="212">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32032" g_stop="32153" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="215" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32154" i_stop="32743" i_length="590">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32744" g_stop="32819" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="291" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32820" i_stop="33544" i_length="725">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33545" g_stop="33603" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="350" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33604" i_stop="35966" i_length="2363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35967" g_stop="36460" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="844" r_length="494" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36461" i_stop="36544" i_length="84">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36545" g_stop="36705" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="845" r_stop="1005" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36706" i_stop="36808" i_length="103">
            <donor d_prob="0.248" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36809" g_stop="37012" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1006" r_stop="1209" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37013" i_stop="37247" i_length="235">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="37248" g_stop="37485" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1210" r_stop="1447" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="37486" i_stop="38296" i_length="811">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="38297" g_stop="39232" g_length="936"/>
          <reference_exon_boundary r_type="cDNA" r_start="1448" r_stop="2383" r_length="936" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2385" polyA_stop="2405"/>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-U316446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2383</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31727" e_stop="31819"/>
          <exon e_start="32032" e_stop="32153"/>
          <exon e_start="32744" e_stop="32819"/>
          <exon e_start="33545" e_stop="33603"/>
          <exon e_start="35967" e_stop="36460"/>
          <exon e_start="36545" e_stop="36705"/>
          <exon e_start="36809" e_stop="37012"/>
          <exon e_start="37248" e_stop="37485"/>
          <exon e_start="38297" e_stop="39232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGTTAAAACTAATAAAGACAGTGTTCAGTTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAGGTGAATTTTACTGAAAACCCCACTTGTAAAGTTGTGATCTTTATGGATATTATGTGGATATTTTTTTTGTGTGTAAATAAATTAGGGTTTTGATGTGGGGATCTTGAATTTTGTGTATTTGGGTGTTGTGGGAAATTTTCTTGAATGAACTTAAAGATCTGTTGGATTGTTTTGTTGATTGTTGTTTGTTTTGTTATTTGTGGTGAATTTAGGGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAGGTAAAGCTTTGTAACTTAATTTTTCTTGAATTTGAGTGATTTTTTTTGTTAATTTTGGTACATGAAGTTGGTCACTTGTGGGATTTCACTTAGGTATGTTGTTGTTGTTACATGAAGGGTTATTTGCTAGTTATTTAACTTGAATCTGTGCTAAGTCTATCACTTTGGATGTTTTATGCAGAAACTGAAATTTATCATTGTAATTGTTGAAAGGTTAATCCTGTTGAAGTAAAAGTTAGAATGTTTAATCCTGTTGAAGTAAAAATTTATCACAGTTTGACCAATGTGTATGGGTTAGTATATAGGAAACAATATACTAACAAGCAACATGTATTTTAACGATTCTCTTTCTGCTGTGTTTTCTTGTTATTTTGGGTTTCTTCTTCTTTTAATGGGGAAGGCTTTTAATGGGCGATGCTCTGTCAGTTAAAGCGATGGGCTCTGGAGACAACTAAGTACATACTTTTGTGGCGTTACTTACTTGTGGTTTTTCCTCACATTGCTAAAATAGTCAACTACAGAAGTTTACCTGTATGTTTTTTTTCTCTTCTTAAAAGAAATTTGAGATTATCAAATGATATTTTATGCAGTGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTTGTAAGATATATAACATTAGGATTTATTTATTTTCCTGTCATTCCTTTCATAATCTTCAATTGGTTGATAGTGTCATCCTGCTAGGAAATATGTTTCCACATTAAGTTTATCATCTATGTAAAAGAAAGTCTGTTTTGGAGGTCAGGTCTCCATGCTTTTTTGTTGCATCATAATTTTTTGCTCTTTTTGTTTTTATGTGGAATTTGAACTTGGGAATTCATCTTGACCAGTTGCCGATATTTTCTCTGATAAGGGTTATTTAGTGGGAAATCTATTTGTTCTTTCTTTTATGTTTAATATTGTACCTGTTGTATTATTCTATTATATGTTATATCACACTTTCCCTATTATTTGCTATTACTTGGTTGCTATGTCTTGTTTAATGTTGTCTTATCCTTTTCAAATTGCTTTGTTATGCGTTACTGAGCTGAGGGTCTTTCAGAAACAACCTCTCTATCTCTACGAGATAGGATAAGGTCTGTGTATTCTCTACCCTCCCAGACCCCACTGTGGGAATACAGCGGATATGATGTTGTTGTTATTGTATAGTTGATTATGCTAGTAGGGTGAAAAGATGAATGGCCCTTCACATGTAACTACATATAGTGTGTACATGTATTTGTATAAAATCCAATATTCTAACATGTGGTGAGAATTATCTTTTGTGGTTTCAGTTACTTGATGTCTAGGCTTCTTATTGGATATTCACCATTTGATCTGAACAGGTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAGGTTAGGCTATGAACTATGTTGTTTTGTATCCAAGTCTTGTTTTTTTCTTATGGACACCATTTGGAATTTTTTTTGCTTTTTTATGCTTCTAGGTGGAGAGAATTTCTTCCTATTTTATTGAAAAAGACAGAATAGCTAATTAGACACCCTTAAGTTGCACTAGATTGTGTTCCCGCCCCCCAGCTTTACAGGATTTCATTTAGGCAAGTATGTGTTCAATATTAGTGTTTTTAACCCTTTTGACCACCCTGTGTGGTCCTTGATCACTATCCACATGAGATAATATGCCAGACCATCATCTATATTTACAAAAGCAATTATCCATCCCCATTTTTTCGTTCCTTATCTTCCCCATCCCTCTAAGTCATTCCCATATCTCTTCCCCATCCACCATCACCTCGCACCACTACCCACCTCTAGCAACTTCTTGAAATCAAAATACTTTTAGATCTTTGAATTTGATTCACTGTTGATAACAATGCATTGTGGGTCATAAAAAAGATTATTTGATGGATTAGAAATCAACAAGGTATGAGGAAATTTTGACTTGAATCCTTCTCTAGCTGAGAGAGATGAAGTCATGTAGATCATTTGGACCTTGTGGTTATATTGCACAGTATCTGTGCATTCATGTTATTGATTTATCAAAAAAGATTAAAGACAGATTCTTGTAGAATTTTCAAGGATCCTAAATAAGTTGGTTCAATCTTTGGTCTTAGCTTAGTACCTTTTTTCTACAAATACACAGTTCAGCTGCAGTGTGCATTATGTTGTGGTCCTTTTTCTGAACATGGAGTGATGCTTATTATCTAATTTAAAGAAGAGTATTCCAACTATGTGCTACAATAATCTATACAAAGTTGTGTGTTCTTTCCTAGTTGTGCACGTTGAATGGAATTTGGAGGATATTAAGCTTATAACTACATTAAAAAAAAAGATTTTGGAGGACATGTGTTCCTTTTGTCTACCTTGACTATTCCACTGGGCACTTGTATCCTCTTGGAAACTCTGTCCAGCGTGTTTAAGCACAATTGGAAGAAATTACCCTGTATATATGCCTCTGCTGGAACTGGAAGACAGAGACATTGCGGTTCCAGTTTCATTGACCACCTGGAACCTGGCCATAAGTCAACCTCGGTGCTTACATGTGTTAAAATACCTTATTCTGATTTCACCATAATGGATGGATGTGATTCAACCACGTCACAAAAATTGTACCTGTTTGAAAACACCGAGTAAAGAAAATGTTAAAACTTGTATTTGGTTCTTTAGTATCTCATACCCTTTTTTAGTTTTACCCGGAGTGATTTTATTTTGAGTGCTTTTATGATGTTGGGTAAGGAACTGTTGGAGCCCCCATGCAAAAAGAAAACATAAATCCCTGCTTTCAAGCATGAACGCATCTACAAAGGGAAAAAGAAATGGAAAATAGAACATAGTCTGTATTTAGTTTTGTTTATGTTATCTCTTGGAAGGTCTATTAAACCTTGTTTAAGTTATATCTGTAAACATTTCATGAGTAAATGGCTTCCATTCTTGTCGAAACATAAGTTGGTAGGGCTGCTCAAAACATAAAACTAAAAAATAAACAATATTGGACAAGATGTATGGACTATGTGATTAAACTGGATATGTTGTTGGACAATATGTATAAAAAATATGTACATTATTTGAGTATTGCATATCAGCTAGTTGAGGAGATTGGGGTTCAAAATCCTAACTGAGACAGAAAATATCTGGTGATTTCTTTCATCTTCCTAGGCATTGGACAGGGTTACTCGGTATTTATGGTGGTGGAAGGTAGTGGGTACCTGGTGGAATAGTTGAGGTGGATGCAAGCTGGTATTTACATTATATAATATAAAATGAGCACGTCTAATGAGGCAGTTTCAAATATGTGATTTCTGCATTGCATTGTCTTGTTTTTGTTCATTCTTCTTTTATGCTTACAAAAAGCAGACGAGGGAGTATGCTAAGCTTCTTTCTTTTGCGTGCATATTCACTTTCCAAGCAAATCCATGATATGAGAAACACAAATAGTTTATGCACCTCCGGGCTCTGGACATATATTTTTGTGCTACTACTATCTGAAGTTTCTTGGTAAATCTTAAGCATATCAAGGTTGGATCAAGAAGATGTAAGAATTTCTGGTCATATGCAATCAAAATAGGATGTACTGTATGATAATTTTAACCTTGTCAAAAAAGTATGTATACTACTAAATTTATTGATGTTTCACTGAATATGCAATGTAGTTTTTAGAAGATTCCAAAAAAGTATGTTTATTGCTAAATTTATTGATGTTTCACTGAATATGCATTGTAGTTTTCAGAAGATGCCATCCTAAAATCTTCAGGTTTCAGGTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGACCTCTTTTAACTGGTGACTTGCAAATTACACTCAAGGAAGGCGTTGGAACTTTGGGGGATCTCACATTTACAGACAATTCAAGTTGGATAAGGAGCAGGAAGTTCAGACTTGGCATGAAAGTTGCTTCTGGATATTGTGAAGGAGTACGCATACGAGAAGCCAAGACTGAGGCTTTCACTGTTAAAGATCACCGTGGAGAATGTAGGCTGCTTAGTCTAAACTTTTTGTTGTTACTCTTCTCTATTCTACTGTTATTGACTCTGTCTGAACTTCTTACTCCTGCAGTGTACAAGAAACATTATCCACCAGCTCTAAATGATGATGTCTGGAGATTGGAGAAGATTGGCAAGGATGGTTCTTTCCACAAGAGGCTAAACAAGGCCGGGATATTTACTGTTGAAGACTTCCTTAGGCTTGTGGTCCGAGACCCACAGAAACTAAGAAGTGTGAGTGTATAGTGAGATATAACAAGGAAAATGAAAAAAATAGATATATTTTAACTTAACATTTCATTGCACTTTGTCTTCAATCTGACTTGTATTTCGGCAGATCCTTGGAAGTGGTATGTCAAATAAGATGTGGGAGGCTCTAATAGAGCATGCAAAGACCTGTGTCTTGAGTGGGAAGCTTTATGTCTATTATTCTGATGATTCGAGGAACGTTGGTGTTGTTTTCAACAATATTTATGAGCTGAATGGCCTTATAGCTGGTGAACAATACTATTCGGCAGATTCACTTTCAGACAGCCAGAAGGTTGTTTATTTTCTTTTATATACTGTTCCTTTGATTTTGAGTTCTCTTTGGGGTTGATATTATTGGATTTCTAACATACTGTGTTAACTCTCTAAGCTATCAGCCTGGTCATTCAACTGACTTTTTCAAAATCTAGAATTGCAATCGAATTTGAAGTGTATTTCATTTAATTGTGGTTCTTACCTTTTGATAAAGAATGTGCCAGCTCTTATATGGACTTTAAATGTTCTTGTAGGTATACGTAGATTCTTTGGTCAAGAAGGCATATGATAATTGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAGGTAACCTGTTAATTTCAAAATTTTTATACTTCTATTGGTGGTAATCAGGGAGTGGTTATCTTCTTTCTTTCGAATAGTTCTGTTTGTTTCATTGCTTTGCCTGGTCTATGAGTCATTGCTGGTATCCTTAGCTGTAATTTGGCTGCTACACATACCATCAATGACTCTTGTACTTTGGCCACTCCCCTCATTTTCATTTGTTTTTGCTTTACAAGCTACATTCGCCGATAGCATTTGTGGAAACGATGTTTCTTAATCGAGAATGTGCAGTGATTTGGAAGGTTGCAGAGTTGTGACAATGGATTGTAGACTAAAAGGAACTTGTCTAATGGATTGTTAAAATGTAATGAGGAAATATTGTTGTGATGTACCGAGACCTTACCCCGTGCCTTTTTGAGGTTGACAGACTGTTTTTAAGAGATCCTTGACTCAAAAGGAAAGTATACTCCACAAGAATAAAAGAAAAGAGACATCAAAGTAGCAAGATACAAACAAATGCTACGACCGCCAGTAATATGAATACTACAAAGAGGACAAGAGGAGACCAGCTCACTCCCTCTCACACAGAAAATGACGACACTCATCTACTTACTAATCTTCTACCCTAATCCTCAACCTCCACACTTTCCTATCTAAAGTCATGTCCTCAGTCAAATGAATTGTGTCATGTCCTATTTGATCGTGTCTGTAGTTTGGTTTCTTAGACTCTTGGAGACCTTTTGTGGTTAAGCTCTCTCTTTCTCCCTTTCCAAACTTATCCTCTGCACTATAAATATCATAATACTGTCATCTTTTAATATTGGTGCAACAGGTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTAACCATCGACCATTTGAATAACTATTCACAAGGCCGTGGTCATGCAGGCCCGAGTAATTAGCTTTCGACTCTAGACGGTATATTTTCCGAGGGATTAGTCAATTCGATTGTTTTTCTTTTTTCATGTACAGAAGCCTGTACAGTAAATTCTCTTTTAACACTCTCATTGTTAACTCCATCGTGCTTACTCTCTTTATCTGTTTCAAGATGTAATGTAATGTATAAGTCCTGCAGACCCAAGGGAAATATGCTTTCAAGAACACCTGTGTGTTGAATTCTATATGAACTTTTATGGTAAAAATGATGCTGTTTGGCTTT</genome_strand>
        <mrna_strand>AAACTGTTAAAACTAATAAAGACAGTGTTCAGTTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAG....................................................................................................................................................................................................................GGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGACCTCTTTTAACTGGTGACTTGCAAATTACACTCAAGGAAGGCGTTGGAACTTTGGGGGATCTCACATTTACAGACAATTCAAGTTGGATAAGGAGCAGGAAGTTCAGACTTGGCATGAAAGTTGCTTCTGGATATTGTGAAGGAGTACGCATACGAGAAGCCAAGACTGAGGCTTTCACTGTTAAAGATCACCGTGGAGAAT....................................................................................TGTACAAGAAACATTATCCACCAGCTCTAAATGATGATGTCTGGAGATTGGAGAAGATTGGCAAGGATGGTTCTTTCCACAAGAGGCTAAACAAGGCCGGGATATTTACTGTTGAAGACTTCCTTAGGCTTGTGGTCCGAGACCCACAGAAACTAAGAAGT.......................................................................................................ATCCTTGGAAGTGGTATGTCAAATAAGATGTGGGAGGCTCTAATAGAGCATGCAAAGACCTGTGTCTTGAGTGGGAAGCTTTATGTCTATTATTCTGATGATTCGAGGAACGTTGGTGTTGTTTTCAACAATATTTATGAGCTGAATGGCCTTATAGCTGGTGAACAATACTATTCGGCAGATTCACTTTCAGACAGCCAGAAG...........................................................................................................................................................................................................................................GTATACGTAGATTCTTTGGTCAAGAAGGCATATGATAATTGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTAACCATCGACCATTTGAATAACTATTCACAAGGCCGTGGTCATGCAGGCCCGAGTAATTAGCTTTCGACTCTAGACGGTATATTTTCCGAGGGATTAGTCAATTCGATTGTTTTTCTTTTTTCATGTACAGAAGCCTGTACAGTAAATTCTCTTTTAACACTCTCATTGTTAACTCCATCGTGCTTACTCTCTTTATCTGTTTCAAGATGTAATGTAATGTATAAGTCCTGCAGACCCAAGGGAAATATGCTTTCAAGAACACCTGTGTGTTGAATTCTATATGAACTTTTATGGTAAAAATGATGCTGTTTGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cNniGk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324083" ref_strand="+" ref_description="SGN-U324083        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (XTR3), identical to endoxyloglucan transferase GI:5533317 from (Arabidopsis thaliana) | chr5:23322114-23323647 REVERSE | Aliases: MUA2.12, MUA2_12(evalue: 3e-99, score=358) genbank/nr: gi|42795462|gb|AAS46241.1| xyloglucan endotransglucosylase-hydrolase XTH3 [Lycopersicon esculentum] (evalue: 1e-104, score=382)">
      <seq>taaaatggcattattttcatcaagaaattcatcaagatctaggtcctctcttccatatttggtgtttctcttaattgctgccttttttgtcttcaaggtagatatactcatatctcagtcttttagttcagcccgtcgcaacctggaaaaaactcctaatcgtatcgttgtgaacccccaaaaatcatcggaagaacgtgttgttgacagcctccctgtagttttagtaaatggtacatttgaccagcatattatgatatcatggggagatgacagaggaaaaatacttgaaaatggagagcttttaacactctccttagacaagaagtctggatcaggctttcagtctaaaaaagagtacctctttgctaaaattgatatgcaaattaagctcgtccctggaaattctgctggcactgttactacgttttacctatcatcacaagggaacaagcatgatgaaatagattttgaattcttggggaattcaacagggaacccttatactcttcatacaaatgtttttagtttaggcaaaggcaatagggaacaacaattcttcttgtggtttgatccaactgcagattatcacacatattcaatcctatggaattctaaatgtattatattctatgttgatgatataccaattagagaatacaaaaatccagagagacttggtctttcatatttaaaataccaaccaatgagactatactcaagtctatggaacgcagatgattgggctacacaaggtggtcgtatcaaaaccaattgggaactagcaccttttgtagcgtcctacaaaaatttcacatatgaagcttgtatttattcaagattaactagttcatcttcatgtgatatcgactctccaactcctatcaacaacgcttggttaacatatgagttagatcgaacaagtcgtgttagaatgaaagctttgcagaaaaaacatatgatttatgattattgcaacgataaatggagatttcctaaaggtcctgctcctgaatgcaagctttttcaataacattatagttttttttgtttattatgtataatgtttaatatattttgtatttttgaattttaggtttaaattcctaggagaaaagaaaaaaaaaggaacattttagttcctttttagaaaattaaagttacttttagtttgggccattgggcctagctagaactttgagtatttttcaaaaaaaaaatagttatatttgctaaatatgatttataagttatatttattcagataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-RYHjf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="49262" stop="54371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49562" g_stop="49658" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49659" i_stop="50555" i_length="897">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50556" g_stop="50668" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="210" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50669" i_stop="51377" i_length="709">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51378" g_stop="51600" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="433" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51601" i_stop="52257" i_length="657">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52258" g_stop="52451" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="627" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52452" i_stop="53431" i_length="980">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53432" g_stop="54070" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="1266" r_length="639" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1267" polyA_stop="1279"/>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-U324083" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1266</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49562" e_stop="49658"/>
          <exon e_start="50556" e_stop="50668"/>
          <exon e_start="51378" e_stop="51600"/>
          <exon e_start="52258" e_stop="52451"/>
          <exon e_start="53432" e_stop="54070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGCATTATTTTCATCAAGAAATTCATCAAGATCTAGGTCCTCTCTTCCATATTTGGTGTTTCTCTTAATTGCTGCCTTTTTTGTCTTCAAGGTACTCTTCTATTTCTTTAATTAATTAATTAATTATTCATCATCTCAAAAATTGAATATATATTTGTTGATTAATGTTCAGTATTGAAAAAACATCAAATTTTAATGAATAAATTTTGTAAGTAGTAATTGAAAATTGACTTGTCGGAAATATTTCTGTGAGTTATAATTGATGGTGTATTTCGATAGGAACTTTTGGAATACCCCTTAAATAGTGGTTAAACATGCAATGTTTAATGTTGAAAAAATATTAAGTTCTGATAAATAACTTTTGATAGAACAAATTGAAAATTTGACTTGTCGAAAATGTTTCTGATAGCTATTTGATGGTATTTCGATAAGAACTTTTGAACCCCTTTATAAATAGTGGTTGAAGAAGTATTGGCATGAATTTAAATTTTGTTATTCAATGCTTAATACTGAAAAAGAAAACCATTAAGTTTAATTTTAACGAATAACTTTCGATAGAACTAATCGAAAATTGACTTGTCAAAAATATTTCTTTCAAGCTATTTGATGGAATTTTGCTAGAAACTTTCCACTCCCCTTATAAATAGTGGTTAAACCTACATTGACATGAATTTGGATTTTGTTATTCAATGTCCAATATTGAAAAAATCATCAAAATTCAACGGATAACTTTTGATAGAACTAAAAAAAATTGACTTGTCGAAAATATTTCTGCTAGCTATTTGACGGAATTTCGATAAGAACCTTCAGACCCCTTGAATAGTGGTTAAGCATACATTGACATGAATTTGAATTTTATCATATCATACAATGTTCAATATTGAAAAAACATCAAATTTTCAACGAATAACTTTCGATAGAATTATCCAATTAAAAAATTAACTAGTTTCGAAATATTTTTAATGATTTTTTTCGATTACATGAGCAGGTAGATATACTCATATCTCAGTCTTTTAGTTCAGCCCGTCGCAACCTGGAAAAAACTCCTAATCGTATCGTTGTGAACCCCCAAAAATCATCGGAAGAACGTGTTGTTGACAGGTACAAAAATATTTTTTTATTTTTCTTATAAAATGAATAAATAATATTTGTACAATTATAATTCATCTTATTAGGAGTAAAAAAATAAAATTTCAAGTTAGATTATATTTACGTATAAAAATAATATCATTTTTCACGACATAATATCAATAATAGTGACTAACAAATATAACATGAGAGAACTATTCACTTATGTGACATATATAATGAGCTTTGAAAGAGGGAAGTATTTGAAATATAAATTTGGCTTAAATTATTAATATCATTCTCGAATTATTAAAAAAACATCTTTTTACTTGATTAATTAAACTTAGATATACACCCGATCTTGCAGTAATATGAGTGAAATACATTATTAAATTCTCGTCAAGTTTAGAGCTGCTTTCGGTACTTTTCTCGACTTTTCATTAAGAGTCACATGCTCTTACAAGAGTTTGAAACCACTTGATATGCCATGTTGTATATCGGGAGTATATCTAAGTTTAGTTAGCCAAGTAGAACGGTATATATAAGACTGTCAATAGTTTGAAACAAAATTAATAATTTACATCAAGCTCGAAGGTGTTTTCAATACTCATCTCACTTTAAAATAAAATAAATAAGAGAATTTAATTTATATACATCCATAAAGTTCAAAATATGAATTTTCTTCCTTTTTTTTTAATGGCAAACAACTAATTTTTTTTTTTATTTTGAAAATTTGCTGCAGCCTCCCTGTAGTTTTAGTAAATGGTACATTTGACCAGCATATTATGATATCATGGGGAGATGACAGAGGAAAAATACTTGAAAATGGAGAGCTTTTAACACTCTCCTTAGACAAGAAGTCTGGATCAGGCTTTCAGTCTAAAAAAGAGTACCTCTTTGCTAAAATTGATATGCAAATTAAGCTCGTCCCTGGAAATTCTGCTGGCACTGTTACTACGTTTTACGTAAGCCTTCTTTACTAACCTTTGCATGAAAAAAAAATCGATTTTTCTTATGATATACTCTTGGTCCTTCAATTATTGATATATTATTTGACATGTGTCCTATCGGTCCATTTATATGAAAAATATGACATATTTAGAAAAAAAAATACAAATCATGTTATCATCAATTATAGAGTATTAGTATAAACTTAACATAACAGATGCTTAATAACATAGTGGAGCATTCAACAATTATGTTATACTTTTGGTCCTTCAATTATTGATGTATTATGATTTTGGTCCTTGTATTATCTGGTTAAGCATCTTTGACCTTCGATCAATGGAAATGTTTCTTATCGATCCATTTATGAGAGAATTATGATCTATTGAGAAAAATTTTCGAATAATGTTATCATCAATTATAGAGTATCAGTACAAACTTAACGTAACATATCCTTAATTATATAGTGGAGCATTTAACAATTATTGATATATATGACTTTGGTCTTTGTGTTAGCTTATTAAGTACATTTGACCTTCAATCCACGGAAATGTGTCTTATCGATCAATTTATGTGAGAAGTATGACATATTTGAATAATTTTTCGAATTATGCAATCATCAACTATATGAAGTAACAATACAAACTTAACGTCTTTTTTTTTTCTTTTGTTTGTAGCTATCATCACAAGGGAACAAGCATGATGAAATAGATTTTGAATTCTTGGGGAATTCAACAGGGAACCCTTATACTCTTCATACAAATGTTTTTAGTTTAGGCAAAGGCAATAGGGAACAACAATTCTTCTTGTGGTTTGATCCAACTGCAGATTATCACACATATTCAATCCTATGGAATTCTAAATGTATTATGTAAGTACTTTTATTATATTTGTCTCTGTTCATTTTTACTTATTTACTATACTAACTTTCTTGCTTTACGTTTCTCTTAGTATAACTCTCTTCGCCGGTCTCTACTTGTCACTAATTGTTCAACAATATTTGTTCAGTTTGGAAAATCAAAAGATAATTTATCGTTTTTTTTCTATTTTACCTTGTTGTTAAATGTTAGTCAATATCTAATACGTGTCTTAAATTTAATATATTTAAAAGATAATATAGTAATATTACTTGTGTTACTTACTGTTTCTTGAGGTGCGTGTCAAGTCAATATTAAATAATATTATTGGACAGAGGGAGTACGTTTACTTTGCTTTAGAAAATTCCATTTCAAAGTTTTTTTTTTCACTTGAAGTTTACCTAAACTAGTTAATTACATAATCCATTTTCATATCAATGAGTGAGATGACAATTTCTATGATCTCGGGATAATGCACAAATACTTCCTCAACTTTTGTTCGTAATCTCAGAGACACATTTATACTATACTAAGGTCCTGTTACCTTCTTGAACTTATTTTATTAATAATTTTCTATCCCTTTTCGGCTTACGTGGCACTATTTTGTGGGCCCAACGCTGGTTGACTTTTTTTTCCCAAGTTTGTGTCATGTAGGACGAAAAGGGGTAGAAAATTATTTATAAAATAAGTTCAGGGGAGTAATAAGACCTTAGTATAGTATAAGTGTGTCTCTGGAATTTCGGGCATAGGTTGAGGGGGTATTTGTACATTTTTTCTATAATCTTTATCGATGCTTATTTCATGAAATAGTTTTGAGGTTGAGTTATGCTCAACATCCATTATTTTTCATGATTTTATAATAAGTAGAATGCCAATTCATCTCCTTATATGATCTTCGATCCTTACCCGTTTGAGCTAGCTATTGAAATATTGATTGCAATATCAAAAGTATTACATTTTCTTATGAGATATTTCCTCATTTTTGTTAATGTAGATTCTATGTTGATGATATACCAATTAGAGAATACAAAAATCCAGAGAGACTTGGTCTTTCATATTTAAAATACCAACCAATGAGACTATACTCAAGTCTATGGAACGCAGATGATTGGGCTACACAAGGTGGTCGTATCAAAACCAATTGGGAACTAGCACCTTTTGTAGCGTCCTACAAAAATTTCACATATGAAGCTTGTATTTATTCAAGATTAACTAGTTCATCTTCATGTGATATCGACTCTCCAACTCCTATCAACAACGCTTGGTTAACATATGAGTTAGATCGAACAAGTCGTGTTAGAATGAAAGCTTTGCAGAAAAAACATATGATTTATGATTATTGCAACGATAAATGGAGATTTCCTAAAGGTCCTGCTCCTGAATGCAAGCTTCTTCAATAACATTATAGTTTTTTTTGTTTATTATGTATAATGTTTAATATATTTTGTATTTTTGAATTTTAGGTTTAAATTCCTAGGAGAAAAGAAAAAAAAAGGAACATTTTAGTTCCTTTTTAGAAAATTAAAGTTACTTTTAGTTTGGGCCATTGGGCCTAGCTAGAACTTTGAGTATTTTTCAAAAAAAAAATAGTTATATTTGCTAAATATGATTTATAAGTTATATTTATTCAGAT</genome_strand>
        <mrna_strand>TAAAATGGCATTATTTTCATCAAGAAATTCATCAAGATCTAGGTCCTCTCTTCCATATTTGGTGTTTCTCTTAATTGCTGCCTTTTTTGTCTTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATATACTCATATCTCAGTCTTTTAGTTCAGCCCGTCGCAACCTGGAAAAAACTCCTAATCGTATCGTTGTGAACCCCCAAAAATCATCGGAAGAACGTGTTGTTGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCCTGTAGTTTTAGTAAATGGTACATTTGACCAGCATATTATGATATCATGGGGAGATGACAGAGGAAAAATACTTGAAAATGGAGAGCTTTTAACACTCTCCTTAGACAAGAAGTCTGGATCAGGCTTTCAGTCTAAAAAAGAGTACCTCTTTGCTAAAATTGATATGCAAATTAAGCTCGTCCCTGGAAATTCTGCTGGCACTGTTACTACGTTTTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCATCACAAGGGAACAAGCATGATGAAATAGATTTTGAATTCTTGGGGAATTCAACAGGGAACCCTTATACTCTTCATACAAATGTTTTTAGTTTAGGCAAAGGCAATAGGGAACAACAATTCTTCTTGTGGTTTGATCCAACTGCAGATTATCACACATATTCAATCCTATGGAATTCTAAATGTATTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTATGTTGATGATATACCAATTAGAGAATACAAAAATCCAGAGAGACTTGGTCTTTCATATTTAAAATACCAACCAATGAGACTATACTCAAGTCTATGGAACGCAGATGATTGGGCTACACAAGGTGGTCGTATCAAAACCAATTGGGAACTAGCACCTTTTGTAGCGTCCTACAAAAATTTCACATATGAAGCTTGTATTTATTCAAGATTAACTAGTTCATCTTCATGTGATATCGACTCTCCAACTCCTATCAACAACGCTTGGTTAACATATGAGTTAGATCGAACAAGTCGTGTTAGAATGAAAGCTTTGCAGAAAAAACATATGATTTATGATTATTGCAACGATAAATGGAGATTTCCTAAAGGTCCTGCTCCTGAATGCAAGCTTTTTCAATAACATTATAGTTTTTTTTGTTTATTATGTATAATGTTTAATATATTTTGTATTTTTGAATTTTAGGTTTAAATTCCTAGGAGAAAAGAAAAAAAAAGGAACATTTTAGTTCCTTTTTAGAAAATTAAAGTTACTTTTAGTTTGGGCCATTGGGCCTAGCTAGAACTTTGAGTATTTTTCAAAAAAAAAATAGTTATATTTGCTAAATATGATTTATAAGTTATATTTATTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cNniGk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320001" ref_strand="+" ref_description="SGN-U320001        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | xyloglucan:xyloglucosyl transferase / xyloglucan endotransglycosylase / endo-xyloglucan transferase (XTR3), identical to endoxyloglucan transferase GI:5533317 from (Arabidopsis thaliana) | chr5:23322114-23323647 REVERSE | Aliases: MUA2.12, MUA2_12(evalue: 8e-98, score=353) genbank/nr: gi|1244752|gb|AAB18364.1| xyloglucan endotransglycosylase-related protein >gi|2129773|pir||S71222 xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-) XTR-3 - Arabidopsis thaliana (fragment) (evalue: 6e-96, score=353)">
      <seq>gaaatacttactcttacacttgataatatttcaggttctggatttcaatcaaagaaggaatatttatttgggaaaattgatatgcaaataaaattagttcaagggaactctgctggcactgtcaccgcatactatttgtcatcacaaggatcaagtcatgatgagatagattttgagtttcttggtaatttaagtggagagccatatacactacatacaaatgtgtatacacaaggcaaaggtgatagagagcaacaatttcacttgtggtttgatcctactaatgattttcatacttattctatcctttggaatccacaaactattgtattttcagtggacaatgtaccaataagggagttcaaaaatatggaaaacattggagttgcatttccaaaatctcaatcaatgaaactttattcaagtttatggaatgctgatgaatgggccacaaggggtgggcttatcaagactgattgggcccaagccccatttacagcctcttatagaaatttcaatgccaatatttgcaataataataataataataattcttgcaaatatttggtagaaaatttggatcctgtgaatgaagaaaaattgagaagggtgcaacaaaaatacatgatatataattattgtactgataataagagatatcctcaaggttttcctctagagtgtagtgttacttaattaattaattaatttaatttaattaatgtaggtagaaaagttggtataataatattaatagcctcctctagttttgtctctttcaagtttattatatattgtggcccaagtaataagggaggactactattgtaatatttatatgttatgtttttaatattggaagttgaaagtgtttatgtacttataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-RYHjf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="59419" stop="61728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59719" g_stop="59853" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59854" i_stop="59953" i_length="100">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59954" g_stop="60147" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="329" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60148" i_stop="60871" i_length="724">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60872" g_stop="61428" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="886" r_length="557" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="887" polyA_stop="906"/>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-U320001" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59719" e_stop="59853"/>
          <exon e_start="59954" e_stop="60147"/>
          <exon e_start="60872" e_stop="61428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATACTTACTCTTACACTTGATAATATTTCAGGTTCTGGATTTCAATCAAAGAAGGAATATTTATTTGGGAAAATTGATATGCAAATAAAATTAGTTCAAGGGAACTCTGCTGGCACTGTCACCGCATACTATGTAATATTTTATTTTTACAAAAAAAAATCAAAAAAATTGGCTATTTTTGTTAATTGTTATGTTTTTTTTAATGTGGGTATTTTTTTTTTTTTTAATTTAGTTGTCATCACAAGGATCAAGTCATGATGAGATAGATTTTGAGTTTCTTGGTAATTTAAGTGGAGAGCCATATACACTACATACAAATGTGTATACACAAGGCAAAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTGCTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGTGTAAGTACTCTAAAACAATATTTTATTTTATTTTATAAAAAAATTTGATAATATTTCATTCATCTGTCCATTTTTACTCGTCTGTTTTTATTTTATAACAAGTTCATCTGTCCATTTTTACTTGTCAGTTAGATAATATTTCATTCATCTGTCCATTTTTACTAGTCTGTTATACGAAAACAGTTTGTTATTGTTTGGAATATCCTTATTAATTAGATACTATATACTTTGGTCCTTGTTATATCCTTGTCAATTAGATACTATATACTATGTATTTAATATCTAATATATTTTCTAAAATATTAAATTTAATGTATTTAAGAAAAAGGTGAGATAATGACATTGTTTAAACTACTTATCATTTTTCTTTTAATCTATCAAGTCAATAGTGATAATTATGATTTGAACAACTAAAAATTAATAGTGGATAAATATGATTGGACAGAGAACGTATCAAGTTTTTCTTTCCGAAATGTGTTTTGCTTACTATGAAAATAGTTCCTAGGTCATCTGATAAGAGTTCTCAAGTTCTGATAGTCCATGTTTCACTTGTTTCACTCTTAACGAGAGTTCTCAGGTTGATAATTGAGTTTCGTGAATTTTTAATGAAAAAGTATATTTAAAAATAGAAGTTATGATATATCAGATAATATATAGTATAAATAACTTTAGTTATCTTCTAGATGATCTGACAGTTGAAAAGTTTATTGTAATTTTTCTTCAGATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATTTCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTAGTTAATTAATTAATT-A---AATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCTAAGTGATAAGGGAGGACTACTATTGTAATATTTATATGTTTATGTTTTTAATAATGGAAGTTGAAAGTGTTTATGTACTTAAAA</genome_strand>
        <mrna_strand>GAAATACTTACTCTTACACTTGATAATATTTCAGGTTCTGGATTTCAATCAAAGAAGGAATATTTATTTGGGAAAATTGATATGCAAATAAAATTAGTTCAAGGGAACTCTGCTGGCACTGTCACCGCATACTAT....................................................................................................TTGTCATCACAAGGATCAAGTCATGATGAGATAGATTTTGAGTTTCTTGGTAATTTAAGTGGAGAGCCATATACACTACATACAAATGTGTATACACAAGGCAAAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTACTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGTGGACAATGTACCAATAAGGGAGTTCAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGGGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAAT-A--ATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATATCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTACTTAATTAATTAATTAATTTAATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCCAAGTAATAAGGGAGGACTACTATTGTAATATTTATATG-TTATGTTTTTAATATTGGAAGTTGAAAGTGTTTATGTACTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-cNniGk/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328742" ref_strand="+" ref_description="SGN-U328742        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | integral membrane family protein, contains TIGRFAM TIGR01569 : plant integral membrane protein TIGR01569; contains Pfam PF04535 : Domain of unknown function (DUF588) | chr4:13133645-13135033 FORWARD | Aliases: F14M19.9(evalue: 7e-30, score=127) genbank/nr: gi|18416627|ref|NP_567729.1| expressed integral membrane protein common family [Arabidopsis thaliana] gi|21618058|gb|AAM67108.1| unknown [Arabidopsis thaliana](evalue: 5e-28, score=127)">
      <seq>cttaaaaaataccataaagatcatttggattttgtgagagtagagtttttgttgaggatttttgcaattattttgttgtttttgcctgcttgtcttgttggatttgattttcaaactaaagttgtttttttaactgtccacataaaagcaaacttcaaatatttggatgcattgagtgctttggtatggattgatgctgctgctgccatttacaatgtacttcaactgctgagatgtttttatattactacttcaaaggtggatattaatcaaatttctcccaagaattattggttctttttcttattagaccaggtagttgtgtacattgtatttgcagcaaattcagcagcaattgaagcatcagcaattgcattaattggaattaaaagcttacaatggatgaaaatatgcaatagatttactagattttgtatccaaattggagctgctttaatattgggctatattgctgtccttatattatttctagtttcatcaatttctgcttttcaattatttaggttatactcacctaaacattttcttaaacttaaaacaaaattaattgatgattcttatgttgttcatcaaaacgtgttgcagaacgatctacaaaataattgatatcgatatagtttgcttccttagtactaagtactttgttatgtaaaaataaatttatgatgaattaatttgactatgcttatactcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0062O11-RYHjf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0062O11.1" temp_strand="+" temp_description="C07HBa0062O11.1  htgs_phase:2 submitted_to_sgn_as:HBa0062O11 upload_account_name:france gi|15987773|gb|AF411808.1| Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence">
        <position start="63121" stop="66966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63420" g_stop="63595" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63596" i_stop="64402" i_length="807">
            <donor d_prob="0.384" d_score="0.94"/>
            <acceptor a_prob="0.310" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64403" g_stop="64541" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="315" r_length="139" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64542" i_stop="66267" i_length="1726">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66268" g_stop="66669" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="716" r_length="401" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="717" polyA_stop="738"/>
      <MATCH_line gen_id="C07HBa0062O11.1" gen_strand="+" ref_id="SGN-U328742" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0062O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63420" e_stop="63595"/>
          <exon e_start="64403" e_stop="64541"/>
          <exon e_start="66268" e_stop="66669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAAAATAACATAAAGATCATATGGATATTGTGAGAGTAGAGTTTTTGTTGAGGCTTTTGGCAATTTTGTTGTTGGTTTTGACTGCTTGTCTTGTTGGATTTGATTCTCAAACTAAAGTTGTTTTTTTAACTGTTCAAATAAAAGCAAACTTCAAATATTTGGGTGCATTGAGGTGAGTATTTTATTTGATGTGGTTTTATCTCTATTGTTTGATCTGAGGGTGGAAATCGTCTTATCGTTGGATGATATTAAGTATAAAAAATAGATTCCGAATTTATTGTATCATGGTAATATAATCTTGAACGTGTGTGATTTCAAAAAAAATTTAAATTTTGAATCTGTCTCTCGATATGTTTTCAAAAAAAATTTCATGTTTCTTTGTTCAAAGGGCTCTTTGTAACATGTCTCTTTGATATATTATAATCTCTTTTTAGTTGTCATGTCGCATTTTTTAAAAGTTAATTTGACTAATTTTTAAAGTTACATTAGATTATATTGTTTTGATATTTTAAACAAAAGATATGGTGGGTCATTTGAAGGATGAATGGCGGAGGGCAACTTTTTAGAGTGGGCGCTCTGTGCGGTACTCTTTATTTTTATGATTAAGATATTTAAAAACTATATAAAAAGTATTATAAATTGCAATTTTTGCATATGAATATGATGAAAAAATGCATCGTAAAATGTTAGTCAAAACTCTTATCGTTTGACTGTAAAAAAGAAAACCATGACCACTAAAAATAAACGTAGGAAATATGAAAGTCAATTATTTAGTCAAACCACGCGAATAATAAAAACAGTCTCTCTACCTTCAGAAGACGAAATTAAGGGTATCACATATGCATCACCCTCTTCAGATCTTATCCGCGGGATTATATATATTAGATATATTATTGTTGTTATTTATATTTATTGGCATATTATTGCATAATTTTTTTCTTAAATCTAATTGTTTGTTTTTATTAATTTGGCATATAAGTGTTTTGGTATGGATTGATGCTGCTGCTGCCATTTATAATGTACTTCAACTGCTGAGATGTTTTTTCATTGCTACTTCAAAGGTGGATATTAAACAAATTTCTCACAAGAATTATTGGTTCTTTTTCTTATTAGACCAGGTAATTAATTAATTAATTTTAATTAACTCTCTCTCTTTGATTTTTAATTGTATATTTTTTCTATGATTTTTCCTTTATCTTACTATATTTATTCCCTTTGTCCACTTTTATTTGTCATGTTATATTTTTCGAAAGTCAATTTAATTAATTTTCAATTAATTAGATATTTTAAACAAAAAATTTTGATATTCAAAAACTATATGAAAAGTCAAATTGCATTTTTTGATATGATAAAAAAAATTATATCTTAAAATATTAGTCAAAGTTTTTATAGTTTGTCTCTAAAAATAAAAATCATGACAAATAATAGTGAACGAAGCTCACGGAGGGAGTATTATATTGTTGATCACAACATAAGGTAAGAAGTTTATATTCATACCTAGTTTCTCACGTGGTGTCTGGTATTCATTTTGTAATCCGATTTTGAATGAAGTACACTAACGTCTAGATTCACGTTGAGAAGTCAAAATTTTGAGATATATATATATATATAAAAGGCCTTCAATTAAAACGATTTCATACATAAAATAATACCTCTAGTTAAAAACGAAGGATTACTTGTCACTCCTAATACCTTCACCAAAATAATAGCTGAAAAGATGGATTATTGTTGAGATATTAATGCTATTTAATGTGGTAATTAACCTAACGTATTATTGAATTCATTGGTTTCGTTTAATTTTTGTGGGAAAATGCACAAGTACCCTCCTTAATCTATGCCCGAAATTTCAGAGACACGCTTATAATATACTAAGGTCCTATTACCTCCTTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTAGGCCTACGTGAAACTAGTTTGAAAGAAAAAATCAATCAGTGTTGTGCCCACAAGATAGTGCCACGTAAATCGAAAAGGGCTAGAATATTATTAATAAAATAAATTCAGTGGGATAATAGGACCGTTGTATAGTATAAGTGTGTCTCTGAGATTTTGGACATAGATTGAGGGGTACTTGTTTATCCCAATTTTTGTCTTGTGCTTTAATTTGTGTTTATTTATTGACTTTTTATAGATTATGATATGTTATTAATAAATGAAAATGCAAGACTTCAATTACAGTAATCTTGTGATACTTGCCTTTTCTTTCCTTTTAGGGTAGAAAATCACATCTAACTACTTTTTTTATTTGTTTCCATTGATATTCCCAAATAATAATGATATGATTATAATTTAAGTGTATGCAGACGTTATCTTATTCATATTTTGGAAATAGAGATATTCCATATAGACCCTCCTAACTAAAGAAATAAATACACAAGTCCATACAATAATATAGAGAAAGAAATAACAGAAATAAAAACGTTATAGAATAATATTTATTCCTTTTATTTCAATTTATGTGACACATTTCGAATTCTGAGGTTCAAACAAGTGTATCTTTGATCGTAAAATTTTTTATATATCTTTTAATTTTGTTTTTGGTAAGTAATCACTTTGAGACAGCTTTTTGAATCTTTTAAATATTTTGAATCATTAATTATTCTGACTTACCGTATTTTTTACGTGGTTTACAAATATAAAAATTTTATTTTTAAAAAAATCAAAGATTTCACGAATAACTTCTCAAACGACAAACTTAAACCATATGACTATCGGAAATCAAAACGCATGTATCACGTGAAACAGAAAAAGTATTATAGACAACCTTTCAAATCATCGTATGTGACAAAATTATATAATAATTATTATTTTTGCAGGTAGTTGTGTACATTGTATTTGCAGCAAATTCAGCAGCAATTGAAGCATCAGCAATTGCATTAATTGGAATTAAAAGCTTACAATGGATGAAAATATGCAATAGATTTACTAGATTTTGTATCCAAATTGGAGCTGCTTTAATATTGGGCTATATTGCTGTTCTTATATTATTTCTAGTTTCATCAATTTCTGCTTTTCAATTATTTAGGTTATATTCACCTAAACATTTTCTTAAACTTAAAACAAAATTAATTGATGATTCTTATGTTGTTCATCAAAACGTGTTGCAGAACGATCTACAAAATAATTGATATCGATGTAGTTTGCTTCCTTAGTACATAAGTACTTTGTTATGTAAAAATAAATTTATGATGAATTAATTCGACTATGCTTTTATTTTT</genome_strand>
        <mrna_strand>CTTAAAAAATACCATAAAGATCATTTGGATTTTGTGAGAGTAGAGTTTTTGTTGAGGATTTTTGCAATTATTTTGTTGTTTTTGCCTGCTTGTCTTGTTGGATTTGATTTTCAAACTAAAGTTGTTTTTTTAACTGTCCACATAAAAGCAAACTTCAAATATTTGGATGCATTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTGGTATGGATTGATGCTGCTGCTGCCATTTACAATGTACTTCAACTGCTGAGATGTTTTTATATTACTACTTCAAAGGTGGATATTAATCAAATTTCTCCCAAGAATTATTGGTTCTTTTTCTTATTAGACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTGTGTACATTGTATTTGCAGCAAATTCAGCAGCAATTGAAGCATCAGCAATTGCATTAATTGGAATTAAAAGCTTACAATGGATGAAAATATGCAATAGATTTACTAGATTTTGTATCCAAATTGGAGCTGCTTTAATATTGGGCTATATTGCTGTCCTTATATTATTTCTAGTTTCATCAATTTCTGCTTTTCAATTATTTAGGTTATACTCACCTAAACATTTTCTTAAACTTAAAACAAAATTAATTGATGATTCTTATGTTGTTCATCAAAACGTGTTGCAGAACGATCTACAAAATAATTGATATCGATATAGTTTGCTTCCTTAGTAC-TAAGTACTTTGTTATGTAAAAATAAATTTATGATGAATTAATTTGACTATGCTTATACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="27775" PGL_stop="28633"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27775" e_stop="28633"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="27775" e_stop="28633" e_length="859"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27775" stop="28633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340177" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGAGGCACGAGCAGAAAGCACTGATCTGGAAAAGACTACAGGAAAATCTATGGGTTCTATTGATATCTTGGATCAGTCCCAGATCTTCTCAAAGAAAATCCAAAAAAGTGGAACCAAGAATCTGATGGTCGACGTTCATGAGGATGATAATTCCAGTTCAAAGGCCAAAGTTCTGAAGGTCAAATGTGCTTCAACCGACAAACTTCCTGATAAACCTACTCCTGCGACCTCACTTAATTCTGACATACCAGTGACTTCGGATGCTGAAATTGGAACTTTACCACCCCCCATAAAATTTAATAAAATTAAGTTTTCAAATAAGATGAGAGCCGAGGATGATTCCAATGAAGCTTACAAGCCTTCCATTCTGGTAAGGCCACCAATGGAGACTGCAGAGTCACATCGCAGCAAGAAAATTGTAATTAAGCAACTCAAGGACTCAACAAGTGTGGATGAAGGCTTCCTGGATGGAAGCAGTGGCATGGAGTACAGGAAGACAAAGAAAATCAATGAATTGTCGTACATGGGGCAGCAAGAGAGGGAATACTTATATGAAGAGACTTTAGGAAGGAAAAAAATGGATGATAAACGATTATGGGAAGAAGAGGAGAGGAGGAGAATTGCTGTCAGACAGAGAGAAGAAAGAGCCAAGATATATGAGCGACAGAAGGCATTAGAAGAACAAGAGAAATTAGCGGCGATTGAAAGCTATCAAGACGCCATAAGAAGAGAAAGGGAGGAAGAAGAACGTCTTAAAGAAAAAAAGAAGAAAAAGAAGAAGACTGAAATAAGAGATGATTACTTGGATGATTTTCTTCCCAGAAGAAACGACAGAAGGATACCAGATCGAGACAGAT</gDNA_template>
            <first_frame> V  E  A  R  A  E  S  T  D  L  E  K  T  T  G  K  S  M  G  S  I  D  I  L  D  Q  S  Q  I  F  S  K  K  I  Q  K  S  G  T  K  N  L  M  V  D  V  H  E  D  D  N  S  S  S  K  A  K  V  L  K  V  K  C  A  S  T  D  K  L  P  D  K  P  T  P  A  T  S  L  N  S  D  I  P  V  T  S  D  A  E  I  G  T  L  P  P  P  I  K  F  N  K  I  K  F  S  N  K  M  R  A  E  D  D  S  N  E  A  Y  K  P  S  I  L  V  R  P  P  M  E  T  A  E  S  H  R  S  K  K  I  V  I  K  Q  L  K  D  S  T  S  V  D  E  G  F  L  D  G  S  S  G  M  E  Y  R  K  T  K  K  I  N  E  L  S  Y  M  G  Q  Q  E  R  E  Y  L  Y  E  E  T  L  G  R  K  K  M  D  D  K  R  L  W  E  E  E  E  R  R  R  I  A  V  R  Q  R  E  E  R  A  K  I  Y  E  R  Q  K  A  L  E  E  Q  E  K  L  A  A  I  E  S  Y  Q  D  A  I  R  R  E  R  E  E  E  E  R  L  K  E  K  K  K  K  K  K  K  T  E  I  R  D  D  Y  L  D  D  F  L  P  R  R  N  D  R  R  I  P  D  R  D  R  </first_frame>
            <second_frame>  W  R  H  E  Q  K  A  L  I  W  K  R  L  Q  E  N  L  W  V  L  L  I  S  W  I  S  P  R  S  S  Q  R  K  S  K  K  V  E  P  R  I  *  W  S  T  F  M  R  M  I  I  P  V  Q  R  P  K  F  *  R  S  N  V  L  Q  P  T  N  F  L  I  N  L  L  L  R  P  H  L  I  L  T  Y  Q  *  L  R  M  L  K  L  E  L  Y  H  P  P  *  N  L  I  K  L  S  F  Q  I  R  *  E  P  R  M  I  P  M  K  L  T  S  L  P  F  W  *  G  H  Q  W  R  L  Q  S  H  I  A  A  R  K  L  *  L  S  N  S  R  T  Q  Q  V  W  M  K  A  S  W  M  E  A  V  A  W  S  T  G  R  Q  R  K  S  M  N  C  R  T  W  G  S  K  R  G  N  T  Y  M  K  R  L  *  E  G  K  K  W  M  I  N  D  Y  G  K  K  R  R  G  G  E  L  L  S  D  R  E  K  K  E  P  R  Y  M  S  D  R  R  H  *  K  N  K  R  N  *  R  R  L  K  A  I  K  T  P  *  E  E  K  G  R  K  K  N  V  L  K  K  K  R  R  K  R  R  R  L  K  *  E  M  I  T  W  M  I  F  F  P  E  E  T  T  E  G  Y  Q  I  E  T  D </second_frame>
            <third_frame>   G  G  T  S  R  K  H  *  S  G  K  D  Y  R  K  I  Y  G  F  Y  *  Y  L  G  S  V  P  D  L  L  K  E  N  P  K  K  W  N  Q  E  S  D  G  R  R  S  *  G  *  *  F  Q  F  K  G  Q  S  S  E  G  Q  M  C  F  N  R  Q  T  S  *  *  T  Y  S  C  D  L  T  *  F  *  H  T  S  D  F  G  C  *  N  W  N  F  T  T  P  H  K  I  *  *  N  *  V  F  K  *  D  E  S  R  G  *  F  Q  *  S  L  Q  A  F  H  S  G  K  A  T  N  G  D  C  R  V  T  S  Q  Q  E  N  C  N  *  A  T  Q  G  L  N  K  C  G  *  R  L  P  G  W  K  Q  W  H  G  V  Q  E  D  K  E  N  Q  *  I  V  V  H  G  A  A  R  E  G  I  L  I  *  R  D  F  R  K  E  K  N  G  *  *  T  I  M  G  R  R  G  E  E  E  N  C  C  Q  T  E  R  R  K  S  Q  D  I  *  A  T  E  G  I  R  R  T  R  E  I  S  G  D  *  K  L  S  R  R  H  K  K  R  K  G  G  R  R  T  S  *  R  K  K  E  E  K  E  E  D  *  N  K  R  *  L  L  G  *  F  S  S  Q  K  K  R  Q  K  D  T  R  S  R  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27775" stop="28632"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEARAESTDLEKTTGKSMGSIDILDQSQIFSKKIQKSGTKNLMVDVHEDDNSSSKAKVLKVKCASTDKLPDKPTPATSLNSDIPVTSDAEIGTLPPPIKFNKIKFSNKMRAEDDSNEAYKPSILVRPPMETAESHRSKKIVIKQLKDSTSVDEGFLDGSSGMEYRKTKKINELSYMGQQEREYLYEETLGRKKMDDKRLWEEEERRRIAVRQREERAKIYERQKALEEQEKLAAIESYQDAIRREREEEERLKEKKKKKKKTEIRDDYLDDFLPRRNDRRIPDRDR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="28654" PGL_stop="30142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28654" e_stop="28716"/>
            <exon e_start="29510" e_stop="30142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28654" e_stop="28716" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28717" i_stop="29509" i_length="793"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29510" e_stop="30142" e_length="633"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28654" stop="28716"/>
              <exon start="29510" stop="30142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327395" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGAGTCTGGAAGGCATGCTAAAGAGCATGCACCACCAACAAAGCGCCGAAGAGGGGGAGAG : GTTGGTTTGTCAAATATTTTAGAAGAAATTGTTGATACACTGAAGAACAATGTGAACGTATCATACCTCTTCTTGAAGCCAGTGACCCGAAAGGAAGCTCCAGATTATCACAAGTATGTAAAACGCCCTATGGACCTATCTACCATCAAAGAGAAAGCCAGGAAACTGGAATATAAAAACCGTGGGCAATTCAGGCATGATGTGGCACAGATCACTATCAATGCACATTTGTACAATGATGGGCGCAACCCAGGTATTCCTCCCCTTGCGGATCAGCTTCTAGAGATTTGTGACTACTTGCTGGAAGAGAATGAGTCCATCTTAGCTGAAGCTGAATCTGGTATTGAGTGATGATACTTCATATTTGAACCTTGTTTCTGTTCGATTTTAAGTTCAATTAAGCAAGCTTTCATTGGTTACTCACAATCTAGTGTCTATTGTTCAGCGATCTAAAGGATAGATCTTCTAGATGTGTCAGTTGCAGCCACCCCAACATATGTATCAGATAAACAAGACGCGACTGAAGGGATTATTGTATCCTAACTGTATAATGAGATTTAGTAGCTGATGATTCTGTGTACCGACCATGTTGTTTTAATCCATGGTCAAGGAAGGCAACGCGCTGATGGGTGT</gDNA_template>
            <first_frame> F  E  S  G  R  H  A  K  E  H  A  P  P  T  K  R  R  R  G  G  E  :  V  G  L  S  N  I  L  E  E  I  V  D  T  L  K  N  N  V  N  V  S  Y  L  F  L  K  P  V  T  R  K  E  A  P  D  Y  H  K  Y  V  K  R  P  M  D  L  S  T  I  K  E  K  A  R  K  L  E  Y  K  N  R  G  Q  F  R  H  D  V  A  Q  I  T  I  N  A  H  L  Y  N  D  G  R  N  P  G  I  P  P  L  A  D  Q  L  L  E  I  C  D  Y  L  L  E  E  N  E  S  I  L  A  E  A  E  S  G  I  E  *  *  Y  F  I  F  E  P  C  F  C  S  I  L  S  S  I  K  Q  A  F  I  G  Y  S  Q  S  S  V  Y  C  S  A  I  *  R  I  D  L  L  D  V  S  V  A  A  T  P  T  Y  V  S  D  K  Q  D  A  T  E  G  I  I  V  S  *  L  Y  N  E  I  *  *  L  M  I  L  C  T  D  H  V  V  L  I  H  G  Q  G  R  Q  R  A  D  G  C </first_frame>
            <second_frame>  S  S  L  E  G  M  L  K  S  M  H  H  Q  Q  S  A  E  E  G  E  R :   L  V  C  Q  I  F  *  K  K  L  L  I  H  *  R  T  M  *  T  Y  H  T  S  S  *  S  Q  *  P  E  R  K  L  Q  I  I  T  S  M  *  N  A  L  W  T  Y  L  P  S  K  R  K  P  G  N  W  N  I  K  T  V  G  N  S  G  M  M  W  H  R  S  L  S  M  H  I  C  T  M  M  G  A  T  Q  V  F  L  P  L  R  I  S  F  *  R  F  V  T  T  C  W  K  R  M  S  P  S  *  L  K  L  N  L  V  L  S  D  D  T  S  Y  L  N  L  V  S  V  R  F  *  V  Q  L  S  K  L  S  L  V  T  H  N  L  V  S  I  V  Q  R  S  K  G  *  I  F  *  M  C  Q  L  Q  P  P  Q  H  M  Y  Q  I  N  K  T  R  L  K  G  L  L  Y  P  N  C  I  M  R  F  S  S  *  *  F  C  V  P  T  M  L  F  *  S  M  V  K  E  G  N  A  L  M  G   </second_frame>
            <third_frame>   R  V  W  K  A  C  *  R  A  C  T  T  N  K  A  P  K  R  G  R   : G  W  F  V  K  Y  F  R  R  N  C  *  Y  T  E  E  Q  C  E  R  I  I  P  L  L  E  A  S  D  P  K  G  S  S  R  L  S  Q  V  C  K  T  P  Y  G  P  I  Y  H  Q  R  E  S  Q  E  T  G  I  *  K  P  W  A  I  Q  A  *  C  G  T  D  H  Y  Q  C  T  F  V  Q  *  W  A  Q  P  R  Y  S  S  P  C  G  S  A  S  R  D  L  *  L  L  A  G  R  E  *  V  H  L  S  *  S  *  I  W  Y  *  V  M  I  L  H  I  *  T  L  F  L  F  D  F  K  F  N  *  A  S  F  H  W  L  L  T  I  *  C  L  L  F  S  D  L  K  D  R  S  S  R  C  V  S  C  S  H  P  N  I  C  I  R  *  T  R  R  D  *  R  D  Y  C  I  L  T  V  *  *  D  L  V  A  D  D  S  V  Y  R  P  C  C  F  N  P  W  S  R  K  A  T  R  *  W  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28654" stop="28716"/>
                    <exon start="29510" stop="29860"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FESGRHAKEHAPPTKRRRGGEVGLSNILEEIVDTLKNNVNVSYLFLKPVTRKEAPDYHKYVKRPMDLSTIKEKARKLEYKNRGQFRHDVAQITINAHLYNDGRNPGIPPLADQLLEICDYLLEENESILAEAESGIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="31727" PGL_stop="39232"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31727" e_stop="31819"/>
            <exon e_start="32032" e_stop="32153"/>
            <exon e_start="32744" e_stop="32819"/>
            <exon e_start="33545" e_stop="33603"/>
            <exon e_start="35967" e_stop="36460"/>
            <exon e_start="36545" e_stop="36705"/>
            <exon e_start="36809" e_stop="37012"/>
            <exon e_start="37248" e_stop="37485"/>
            <exon e_start="38297" e_stop="39232"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.248" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31727" e_stop="31819" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31820" i_stop="32031" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32032" e_stop="32153" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="32154" i_stop="32743" i_length="590"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32744" e_stop="32819" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32820" i_stop="33544" i_length="725"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33545" e_stop="33603" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33604" i_stop="35966" i_length="2363"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35967" e_stop="36460" e_length="494"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.963">
            <gDNA_intron_boundary i_start="36461" i_stop="36544" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36545" e_stop="36705" e_length="161"/>
          </exon>
          <intron i_serial="6" don_prob="0.248" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36706" i_stop="36808" i_length="103"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="36809" e_stop="37012" e_length="204"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.985">
            <gDNA_intron_boundary i_start="37013" i_stop="37247" i_length="235"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="37248" e_stop="37485" e_length="238"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37486" i_stop="38296" i_length="811"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="38297" e_stop="39232" e_length="936"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31727" stop="31819"/>
              <exon start="32032" stop="32153"/>
              <exon start="32744" stop="32819"/>
              <exon start="33545" stop="33603"/>
              <exon start="35967" stop="36460"/>
              <exon start="36545" stop="36705"/>
              <exon start="36809" stop="37012"/>
              <exon start="37248" stop="37485"/>
              <exon start="38297" stop="39232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTGTTAAAACTAATAAAGACAGTGTTCAGTTCTTGAGAGAGAAAGAGAAATCTCTTAGGTTCAACTAAAGTTTCAAGAATTACCAATCAG : GGAAAAAAGAAGGTATTTGTCTAAATGCAGACTAGGTATATGGAGAGGACAAAATCTATGAAGAGGAGCTTGGAGGGTGATGATGAACAGCCTCCTGAGCGTAAAAGACCTGCTTTAGCTAG : TGTTATTGTGGAAGCTCTCAAGGTGGATAGTCTTCAAAAGCTCTGCTCATCTTTGGAACCGATTCTTCGGAGAGTT : GTTAGTGAAGAGGTGGAACGAGCATTGGCTAAGTTAGGCCCTGCCAGAATTGCTGGAAG : GTCATCTCCTAAGAGAATTGAAGGGCCCGATGGAAGTAACTTGCAGCTTCAGTTTAGGTCTAGGCTATCTTTGCCTCTGTTCACTGGAGGCAAAGTAGAAGGAGAGCATGGTGCTGCTATCCATGTTGTCTTAATTGACACAACTACTGGCCATCTTGTGACTGCTGGTCCTGAATCATGTATAAAACTGGACGTTGTTGTGCTAGAAGGTGATTTCAACAATGAAGAAGATGAAGGATGGACACAAGAAGAATTTGACGGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGACCTCTTTTAACTGGTGACTTGCAAATTACACTCAAGGAAGGCGTTGGAACTTTGGGGGATCTCACATTTACAGACAATTCAAGTTGGATAAGGAGCAGGAAGTTCAGACTTGGCATGAAAGTTGCTTCTGGATATTGTGAAGGAGTACGCATACGAGAAGCCAAGACTGAGGCTTTCACTGTTAAAGATCACCGTGGAGAAT : TGTACAAGAAACATTATCCACCAGCTCTAAATGATGATGTCTGGAGATTGGAGAAGATTGGCAAGGATGGTTCTTTCCACAAGAGGCTAAACAAGGCCGGGATATTTACTGTTGAAGACTTCCTTAGGCTTGTGGTCCGAGACCCACAGAAACTAAGAAGT : ATCCTTGGAAGTGGTATGTCAAATAAGATGTGGGAGGCTCTAATAGAGCATGCAAAGACCTGTGTCTTGAGTGGGAAGCTTTATGTCTATTATTCTGATGATTCGAGGAACGTTGGTGTTGTTTTCAACAATATTTATGAGCTGAATGGCCTTATAGCTGGTGAACAATACTATTCGGCAGATTCACTTTCAGACAGCCAGAAG : GTATACGTAGATTCTTTGGTCAAGAAGGCATATGATAATTGGAATCAAGTCGTTGAATATGATGGCAAGTCATTTCTGAACATCAAGCAAAATCAAAATCCAAGCTCTTCTAGGAACGAGCTTCCTGTTGGGCCAGTGGATTACCCCAACACCTTGGTTAATCAGCTTCCGCAGTCACGCCATCCTGTTCCAGTTCAATCCGAGCAATCTTCTATGGATCCCAACTTGCTAATTGGAG : GTTCAGGTTACAATGACAACATGGTTGCTAGGATGCCTACCCAAAGTCCTATGATGAATTCTAATTCCCGCTCACAGTTTGAGAGCACTCCATTTGCGCCTCAGCACCAAATAACCAGCAGTCATCAGCTCCAGAGTACGAGATATGACAACAATGTTGGCCTGGCTCTTGGTCCTCCACAATCATCTTCATTCCAGACAATTACCTCATCTCTCCCACAAACCAATCTTAATCCTTTTGATGATTGGTCGCACAACAGGGACAAGGGAGTTGACGAATTCTTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTAACCATCGACCATTTGAATAACTATTCACAAGGCCGTGGTCATGCAGGCCCGAGTAATTAGCTTTCGACTCTAGACGGTATATTTTCCGAGGGATTAGTCAATTCGATTGTTTTTCTTTTTTCATGTACAGAAGCCTGTACAGTAAATTCTCTTTTAACACTCTCATTGTTAACTCCATCGTGCTTACTCTCTTTATCTGTTTCAAGATGTAATGTAATGTATAAGTCCTGCAGACCCAAGGGAAATATGCTTTCAAGAACACCTGTGTGTTGAATTCTATATGAACTTTTATGGTAAAAATGATGCTGTTTGGCTTT</gDNA_template>
            <first_frame> K  L  L  K  L  I  K  T  V  F  S  S  *  E  R  K  R  N  L  L  G  S  T  K  V  S  R  I  T  N  Q  :  G  K  K  K  V  F  V  *  M  Q  T  R  Y  M  E  R  T  K  S  M  K  R  S  L  E  G  D  D  E  Q  P  P  E  R  K  R  P  A  L  A  S :   V  I  V  E  A  L  K  V  D  S  L  Q  K  L  C  S  S  L  E  P  I  L  R  R  V  :  V  S  E  E  V  E  R  A  L  A  K  L  G  P  A  R  I  A  G  R :   S  S  P  K  R  I  E  G  P  D  G  S  N  L  Q  L  Q  F  R  S  R  L  S  L  P  L  F  T  G  G  K  V  E  G  E  H  G  A  A  I  H  V  V  L  I  D  T  T  T  G  H  L  V  T  A  G  P  E  S  C  I  K  L  D  V  V  V  L  E  G  D  F  N  N  E  E  D  E  G  W  T  Q  E  E  F  D  G  H  V  V  K  E  R  E  G  K  R  P  L  L  T  G  D  L  Q  I  T  L  K  E  G  V  G  T  L  G  D  L  T  F  T  D  N  S  S  W  I  R  S  R  K  F  R  L  G  M  K  V  A  S  G  Y  C  E  G  V  R  I  R  E  A  K  T  E  A  F  T  V  K  D  H  R  G  E   : L  Y  K  K  H  Y  P  P  A  L  N  D  D  V  W  R  L  E  K  I  G  K  D  G  S  F  H  K  R  L  N  K  A  G  I  F  T  V  E  D  F  L  R  L  V  V  R  D  P  Q  K  L  R  S  :  I  L  G  S  G  M  S  N  K  M  W  E  A  L  I  E  H  A  K  T  C  V  L  S  G  K  L  Y  V  Y  Y  S  D  D  S  R  N  V  G  V  V  F  N  N  I  Y  E  L  N  G  L  I  A  G  E  Q  Y  Y  S  A  D  S  L  S  D  S  Q  K  :  V  Y  V  D  S  L  V  K  K  A  Y  D  N  W  N  Q  V  V  E  Y  D  G  K  S  F  L  N  I  K  Q  N  Q  N  P  S  S  S  R  N  E  L  P  V  G  P  V  D  Y  P  N  T  L  V  N  Q  L  P  Q  S  R  H  P  V  P  V  Q  S  E  Q  S  S  M  D  P  N  L  L  I  G   : G  S  G  Y  N  D  N  M  V  A  R  M  P  T  Q  S  P  M  M  N  S  N  S  R  S  Q  F  E  S  T  P  F  A  P  Q  H  Q  I  T  S  S  H  Q  L  Q  S  T  R  Y  D  N  N  V  G  L  A  L  G  P  P  Q  S  S  S  F  Q  T  I  T  S  S  L  P  Q  T  N  L  N  P  F  D  D  W  S  H  N  R  D  K  G  V  D  E  F  L  S  E  E  E  I  R  M  R  S  N  E  I  L  E  N  D  D  M  Q  H  L  L  R  L  F  S  M  G  G  H  G  S  I  N  V  P  E  D  G  Y  G  F  P  S  F  M  P  S  P  S  P  S  F  S  Y  D  E  D  R  T  R  P  G  K  A  V  V  G  W  L  K  I  K  A  A  M  R  W  G  F  F  V  R  K  K  A  A  E  R  R  A  Q  L  V  E  L  D  D  E  *  N  L  V  W  K  H  *  G  I  *  T  *  P  S  T  I  *  I  T  I  H  K  A  V  V  M  Q  A  R  V  I  S  F  R  L  *  T  V  Y  F  P  R  D  *  S  I  R  L  F  F  F  F  H  V  Q  K  P  V  Q  *  I  L  F  *  H  S  H  C  *  L  H  R  A  Y  S  L  Y  L  F  Q  D  V  M  *  C  I  S  P  A  D  P  R  E  I  C  F  Q  E  H  L  C  V  E  F  Y  M  N  F  Y  G  K  N  D  A  V  W  L  </first_frame>
            <second_frame>  N  C  *  N  *  *  R  Q  C  S  V  L  E  R  E  R  E  I  S  *  V  Q  L  K  F  Q  E  L  P  I  R :   E  K  R  R  Y  L  S  K  C  R  L  G  I  W  R  G  Q  N  L  *  R  G  A  W  R  V  M  M  N  S  L  L  S  V  K  D  L  L  *  L   : V  L  L  W  K  L  S  R  W  I  V  F  K  S  S  A  H  L  W  N  R  F  F  G  E  L :   L  V  K  R  W  N  E  H  W  L  S  *  A  L  P  E  L  L  E   : G  H  L  L  R  E  L  K  G  P  M  E  V  T  C  S  F  S  L  G  L  G  Y  L  C  L  C  S  L  E  A  K  *  K  E  S  M  V  L  L  S  M  L  S  *  L  T  Q  L  L  A  I  L  *  L  L  V  L  N  H  V  *  N  W  T  L  L  C  *  K  V  I  S  T  M  K  K  M  K  D  G  H  K  K  N  L  T  V  M  L  L  K  S  V  K  E  R  D  L  F  *  L  V  T  C  K  L  H  S  R  K  A  L  E  L  W  G  I  S  H  L  Q  T  I  Q  V  G  *  G  A  G  S  S  D  L  A  *  K  L  L  L  D  I  V  K  E  Y  A  Y  E  K  P  R  L  R  L  S  L  L  K  I  T  V  E  N  :  C  T  R  N  I  I  H  Q  L  *  M  M  M  S  G  D  W  R  R  L  A  R  M  V  L  S  T  R  G  *  T  R  P  G  Y  L  L  L  K  T  S  L  G  L  W  S  E  T  H  R  N  *  E  V :   S  L  E  V  V  C  Q  I  R  C  G  R  L  *  *  S  M  Q  R  P  V  S  *  V  G  S  F  M  S  I  I  L  M  I  R  G  T  L  V  L  F  S  T  I  F  M  S  *  M  A  L  *  L  V  N  N  T  I  R  Q  I  H  F  Q  T  A  R  R :   Y  T  *  I  L  W  S  R  R  H  M  I  I  G  I  K  S  L  N  M  M  A  S  H  F  *  T  S  S  K  I  K  I  Q  A  L  L  G  T  S  F  L  L  G  Q  W  I  T  P  T  P  W  L  I  S  F  R  S  H  A  I  L  F  Q  F  N  P  S  N  L  L  W  I  P  T  C  *  L  E  :  V  Q  V  T  M  T  T  W  L  L  G  C  L  P  K  V  L  *  *  I  L  I  P  A  H  S  L  R  A  L  H  L  R  L  S  T  K  *  P  A  V  I  S  S  R  V  R  D  M  T  T  M  L  A  W  L  L  V  L  H  N  H  L  H  S  R  Q  L  P  H  L  S  H  K  P  I  L  I  L  L  M  I  G  R  T  T  G  T  R  E  L  T  N  S  C  L  R  R  K  F  E  *  E  A  M  K  F  L  R  M  M  I  C  N  I  C  *  D  F  S  A  W  E  A  M  V  L  *  M  C  L  K  M  D  M  V  S  H  L  S  C  L  R  H  L  L  V  S  V  M  M  K  T  A  H  G  Q  E  K  L  L  L  V  G  *  K  L  R  L  Q  *  G  G  G  S  L  C  G  R  R  Q  L  R  G  V  H  S  S  W  N  W  M  M  N  K  I  W  C  G  N  I  R  A  F  R  L  N  H  R  P  F  E  *  L  F  T  R  P  W  S  C  R  P  E  *  L  A  F  D  S  R  R  Y  I  F  R  G  I  S  Q  F  D  C  F  S  F  F  M  Y  R  S  L  Y  S  K  F  S  F  N  T  L  I  V  N  S  I  V  L  T  L  F  I  C  F  K  M  *  C  N  V  *  V  L  Q  T  Q  G  K  Y  A  F  K  N  T  C  V  L  N  S  I  *  T  F  M  V  K  M  M  L  F  G  F </second_frame>
            <third_frame>   T  V  K  T  N  K  D  S  V  Q  F  L  R  E  K  E  K  S  L  R  F  N  *  S  F  K  N  Y  Q  S   : G  K  K  E  G  I  C  L  N  A  D  *  V  Y  G  E  D  K  I  Y  E  E  E  L  G  G  *  *  *  T  A  S  *  A  *  K  T  C  F  S  *  :  C  Y  C  G  S  S  Q  G  G  *  S  S  K  A  L  L  I  F  G  T  D  S  S  E  S   : C  *  *  R  G  G  T  S  I  G  *  V  R  P  C  Q  N  C  W  K  :  V  I  S  *  E  N  *  R  A  R  W  K  *  L  A  A  S  V  *  V  *  A  I  F  A  S  V  H  W  R  Q  S  R  R  R  A  W  C  C  Y  P  C  C  L  N  *  H  N  Y  W  P  S  C  D  C  W  S  *  I  M  Y  K  T  G  R  C  C  A  R  R  *  F  Q  Q  *  R  R  *  R  M  D  T  R  R  I  *  R  S  C  C  *  R  A  *  R  K  E  T  S  F  N  W  *  L  A  N  Y  T  Q  G  R  R  W  N  F  G  G  S  H  I  Y  R  Q  F  K  L  D  K  E  Q  E  V  Q  T  W  H  E  S  C  F  W  I  L  *  R  S  T  H  T  R  S  Q  D  *  G  F  H  C  *  R  S  P  W  R  I :   V  Q  E  T  L  S  T  S  S  K  *  *  C  L  E  I  G  E  D  W  Q  G  W  F  F  P  Q  E  A  K  Q  G  R  D  I  Y  C  *  R  L  P  *  A  C  G  P  R  P  T  E  T  K  K   : Y  P  W  K  W  Y  V  K  *  D  V  G  G  S  N  R  A  C  K  D  L  C  L  E  W  E  A  L  C  L  L  F  *  *  F  E  E  R  W  C  C  F  Q  Q  Y  L  *  A  E  W  P  Y  S  W  *  T  I  L  F  G  R  F  T  F  R  Q  P  E   : G  I  R  R  F  F  G  Q  E  G  I  *  *  L  E  S  S  R  *  I  *  W  Q  V  I  S  E  H  Q  A  K  S  K  S  K  L  F  *  E  R  A  S  C  W  A  S  G  L  P  Q  H  L  G  *  S  A  S  A  V  T  P  S  C  S  S  S  I  R  A  I  F  Y  G  S  Q  L  A  N  W  R :   F  R  L  Q  *  Q  H  G  C  *  D  A  Y  P  K  S  Y  D  E  F  *  F  P  L  T  V  *  E  H  S  I  C  A  S  A  P  N  N  Q  Q  S  S  A  P  E  Y  E  I  *  Q  Q  C  W  P  G  S  W  S  S  T  I  I  F  I  P  D  N  Y  L  I  S  P  T  N  Q  S  *  S  F  *  *  L  V  A  Q  Q  G  Q  G  S  *  R  I  L  V  *  G  G  N  S  N  E  K  Q  *  N  S  *  E  *  *  Y  A  T  F  A  K  T  F  Q  H  G  R  P  W  F  Y  K  C  A  *  R  W  I  W  F  P  I  F  H  A  F  A  I  S  *  F  Q  L  *  *  R  P  H  T  A  R  K  S  C  C  W  L  A  E  N  *  G  C  N  E  V  G  V  L  C  A  E  E  G  S  *  E  A  C  T  A  R  G  T  G  *  *  I  K  S  G  V  E  T  L  G  H  L  D  L  T  I  D  H  L  N  N  Y  S  Q  G  R  G  H  A  G  P  S  N  *  L  S  T  L  D  G  I  F  S  E  G  L  V  N  S  I  V  F  L  F  S  C  T  E  A  C  T  V  N  S  L  L  T  L  S  L  L  T  P  S  C  L  L  S  L  S  V  S  R  C  N  V  M  Y  K  S  C  R  P  K  G  N  M  L  S  R  T  P  V  C  *  I  L  Y  E  L  L  W  *  K  *  C  C  L  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32056" stop="32153"/>
                    <exon start="32744" stop="32819"/>
                    <exon start="33545" stop="33603"/>
                    <exon start="35967" stop="36460"/>
                    <exon start="36545" stop="36705"/>
                    <exon start="36809" stop="37012"/>
                    <exon start="37248" stop="37485"/>
                    <exon start="38297" stop="38880"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1911</number_coding_nucleotides>
                  <number_encoded_amino_acids>637</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQTRYMERTKSMKRSLEGDDEQPPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARIAGRSSPKRIEGPDGSNLQLQFRSRLSLPLFTGGKVEGEHGAAIHVVLIDTTTGHLVTAGPESCIKLDVVVLEGDFNNEEDEGWTQEEFDGHVVKEREGKRPLLTGDLQITLKEGVGTLGDLTFTDNSSWIRSRKFRLGMKVASGYCEGVRIREAKTEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDPQKLRSILGSGMSNKMWEALIEHAKTCVLSGKLYVYYSDDSRNVGVVFNNIYELNGLIAGEQYYSADSLSDSQKVYVDSLVKKAYDNWNQVVEYDGKSFLNIKQNQNPSSSRNELPVGPVDYPNTLVNQLPQSRHPVPVQSEQSSMDPNLLIGGSGYNDNMVARMPTQSPMMNSNSRSQFESTPFAPQHQITSSHQLQSTRYDNNVGLALGPPQSSSFQTITSSLPQTNLNPFDDWSHNRDKGVDEFLSEEEIRMRSNEILENDDMQHLLRLFSMGGHGSINVPEDGYGFPSFMPSPSPSFSYDEDRTRPGKAVVGWLKIKAAMRWGFFVRKKAAERRAQLVELDDE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38976" stop="39188"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSTLDGIFSEGLVNSIVFLFSCTEACTVNSLLTLSLLTPSCLLSLSVSRCNVMYKSCRPKGNMLSRTPVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="49562" PGL_stop="54070"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49562" e_stop="49658"/>
            <exon e_start="50556" e_stop="50668"/>
            <exon e_start="51378" e_stop="51600"/>
            <exon e_start="52258" e_stop="52451"/>
            <exon e_start="53432" e_stop="54070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49562" e_stop="49658" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.965">
            <gDNA_intron_boundary i_start="49659" i_stop="50555" i_length="897"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50556" e_stop="50668" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.939">
            <gDNA_intron_boundary i_start="50669" i_stop="51377" i_length="709"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51378" e_stop="51600" e_length="223"/>
          </exon>
          <intron i_serial="3" don_prob="0.943" acc_prob="0.995">
            <gDNA_intron_boundary i_start="51601" i_stop="52257" i_length="657"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52258" e_stop="52451" e_length="194"/>
          </exon>
          <intron i_serial="4" don_prob="0.909" acc_prob="0.983">
            <gDNA_intron_boundary i_start="52452" i_stop="53431" i_length="980"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="53432" e_stop="54070" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49562" stop="49658"/>
              <exon start="50556" stop="50668"/>
              <exon start="51378" stop="51600"/>
              <exon start="52258" stop="52451"/>
              <exon start="53432" stop="54070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324083" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGGCATTATTTTCATCAAGAAATTCATCAAGATCTAGGTCCTCTCTTCCATATTTGGTGTTTCTCTTAATTGCTGCCTTTTTTGTCTTCAAG : GTAGATATACTCATATCTCAGTCTTTTAGTTCAGCCCGTCGCAACCTGGAAAAAACTCCTAATCGTATCGTTGTGAACCCCCAAAAATCATCGGAAGAACGTGTTGTTGACAG : CCTCCCTGTAGTTTTAGTAAATGGTACATTTGACCAGCATATTATGATATCATGGGGAGATGACAGAGGAAAAATACTTGAAAATGGAGAGCTTTTAACACTCTCCTTAGACAAGAAGTCTGGATCAGGCTTTCAGTCTAAAAAAGAGTACCTCTTTGCTAAAATTGATATGCAAATTAAGCTCGTCCCTGGAAATTCTGCTGGCACTGTTACTACGTTTTAC : CTATCATCACAAGGGAACAAGCATGATGAAATAGATTTTGAATTCTTGGGGAATTCAACAGGGAACCCTTATACTCTTCATACAAATGTTTTTAGTTTAGGCAAAGGCAATAGGGAACAACAATTCTTCTTGTGGTTTGATCCAACTGCAGATTATCACACATATTCAATCCTATGGAATTCTAAATGTATTAT : ATTCTATGTTGATGATATACCAATTAGAGAATACAAAAATCCAGAGAGACTTGGTCTTTCATATTTAAAATACCAACCAATGAGACTATACTCAAGTCTATGGAACGCAGATGATTGGGCTACACAAGGTGGTCGTATCAAAACCAATTGGGAACTAGCACCTTTTGTAGCGTCCTACAAAAATTTCACATATGAAGCTTGTATTTATTCAAGATTAACTAGTTCATCTTCATGTGATATCGACTCTCCAACTCCTATCAACAACGCTTGGTTAACATATGAGTTAGATCGAACAAGTCGTGTTAGAATGAAAGCTTTGCAGAAAAAACATATGATTTATGATTATTGCAACGATAAATGGAGATTTCCTAAAGGTCCTGCTCCTGAATGCAAGCTTCTTCAATAACATTATAGTTTTTTTTGTTTATTATGTATAATGTTTAATATATTTTGTATTTTTGAATTTTAGGTTTAAATTCCTAGGAGAAAAGAAAAAAAAAGGAACATTTTAGTTCCTTTTTAGAAAATTAAAGTTACTTTTAGTTTGGGCCATTGGGCCTAGCTAGAACTTTGAGTATTTTTCAAAAAAAAAATAGTTATATTTGCTAAATATGATTTATAAGTTATATTTATTCAGAT</gDNA_template>
            <first_frame> *  N  G  I  I  F  I  K  K  F  I  K  I  *  V  L  S  S  I  F  G  V  S  L  N  C  C  L  F  C  L  Q   : G  R  Y  T  H  I  S  V  F  *  F  S  P  S  Q  P  G  K  N  S  *  S  Y  R  C  E  P  P  K  I  I  G  R  T  C  C  *  Q  :  P  P  C  S  F  S  K  W  Y  I  *  P  A  Y  Y  D  I  M  G  R  *  Q  R  K  N  T  *  K  W  R  A  F  N  T  L  L  R  Q  E  V  W  I  R  L  S  V  *  K  R  V  P  L  C  *  N  *  Y  A  N  *  A  R  P  W  K  F  C  W  H  C  Y  Y  V  L   : P  I  I  T  R  E  Q  A  *  *  N  R  F  *  I  L  G  E  F  N  R  E  P  L  Y  S  S  Y  K  C  F  *  F  R  Q  R  Q  *  G  T  T  I  L  L  V  V  *  S  N  C  R  L  S  H  I  F  N  P  M  E  F  *  M  Y  Y  :  I  L  C  *  *  Y  T  N  *  R  I  Q  K  S  R  E  T  W  S  F  I  F  K  I  P  T  N  E  T  I  L  K  S  M  E  R  R  *  L  G  Y  T  R  W  S  Y  Q  N  Q  L  G  T  S  T  F  C  S  V  L  Q  K  F  H  I  *  S  L  Y  L  F  K  I  N  *  F  I  F  M  *  Y  R  L  S  N  S  Y  Q  Q  R  L  V  N  I  *  V  R  S  N  K  S  C  *  N  E  S  F  A  E  K  T  Y  D  L  *  L  L  Q  R  *  M  E  I  S  *  R  S  C  S  *  M  Q  A  S  S  I  T  L  *  F  F  L  F  I  M  Y  N  V  *  Y  I  L  Y  F  *  I  L  G  L  N  S  *  E  K  R  K  K  K  E  H  F  S  S  F  L  E  N  *  S  Y  F  *  F  G  P  L  G  L  A  R  T  L  S  I  F  Q  K  K  N  S  Y  I  C  *  I  *  F  I  S  Y  I  Y  S  D </first_frame>
            <second_frame>  K  M  A  L  F  S  S  R  N  S  S  R  S  R  S  S  L  P  Y  L  V  F  L  L  I  A  A  F  F  V  F  K  :  V  D  I  L  I  S  Q  S  F  S  S  A  R  R  N  L  E  K  T  P  N  R  I  V  V  N  P  Q  K  S  S  E  E  R  V  V  D  S :   L  P  V  V  L  V  N  G  T  F  D  Q  H  I  M  I  S  W  G  D  D  R  G  K  I  L  E  N  G  E  L  L  T  L  S  L  D  K  K  S  G  S  G  F  Q  S  K  K  E  Y  L  F  A  K  I  D  M  Q  I  K  L  V  P  G  N  S  A  G  T  V  T  T  F  Y  :  L  S  S  Q  G  N  K  H  D  E  I  D  F  E  F  L  G  N  S  T  G  N  P  Y  T  L  H  T  N  V  F  S  L  G  K  G  N  R  E  Q  Q  F  F  L  W  F  D  P  T  A  D  Y  H  T  Y  S  I  L  W  N  S  K  C  I  I :   F  Y  V  D  D  I  P  I  R  E  Y  K  N  P  E  R  L  G  L  S  Y  L  K  Y  Q  P  M  R  L  Y  S  S  L  W  N  A  D  D  W  A  T  Q  G  G  R  I  K  T  N  W  E  L  A  P  F  V  A  S  Y  K  N  F  T  Y  E  A  C  I  Y  S  R  L  T  S  S  S  S  C  D  I  D  S  P  T  P  I  N  N  A  W  L  T  Y  E  L  D  R  T  S  R  V  R  M  K  A  L  Q  K  K  H  M  I  Y  D  Y  C  N  D  K  W  R  F  P  K  G  P  A  P  E  C  K  L  L  Q  *  H  Y  S  F  F  C  L  L  C  I  M  F  N  I  F  C  I  F  E  F  *  V  *  I  P  R  R  K  E  K  K  R  N  I  L  V  P  F  *  K  I  K  V  T  F  S  L  G  H  W  A  *  L  E  L  *  V  F  F  K  K  K  I  V  I  F  A  K  Y  D  L  *  V  I  F  I  Q   </second_frame>
            <third_frame>   K  W  H  Y  F  H  Q  E  I  H  Q  D  L  G  P  L  F  H  I  W  C  F  S  *  L  L  P  F  L  S  S  R :   *  I  Y  S  Y  L  S  L  L  V  Q  P  V  A  T  W  K  K  L  L  I  V  S  L  *  T  P  K  N  H  R  K  N  V  L  L  T   : A  S  L  *  F  *  *  M  V  H  L  T  S  I  L  *  Y  H  G  E  M  T  E  E  K  Y  L  K  M  E  S  F  *  H  S  P  *  T  R  S  L  D  Q  A  F  S  L  K  K  S  T  S  L  L  K  L  I  C  K  L  S  S  S  L  E  I  L  L  A  L  L  L  R  F  T :   Y  H  H  K  G  T  S  M  M  K  *  I  L  N  S  W  G  I  Q  Q  G  T  L  I  L  F  I  Q  M  F  L  V  *  A  K  A  I  G  N  N  N  S  S  C  G  L  I  Q  L  Q  I  I  T  H  I  Q  S  Y  G  I  L  N  V  L   : Y  S  M  L  M  I  Y  Q  L  E  N  T  K  I  Q  R  D  L  V  F  H  I  *  N  T  N  Q  *  D  Y  T  Q  V  Y  G  T  Q  M  I  G  L  H  K  V  V  V  S  K  P  I  G  N  *  H  L  L  *  R  P  T  K  I  S  H  M  K  L  V  F  I  Q  D  *  L  V  H  L  H  V  I  S  T  L  Q  L  L  S  T  T  L  G  *  H  M  S  *  I  E  Q  V  V  L  E  *  K  L  C  R  K  N  I  *  F  M  I  I  A  T  I  N  G  D  F  L  K  V  L  L  L  N  A  S  F  F  N  N  I  I  V  F  F  V  Y  Y  V  *  C  L  I  Y  F  V  F  L  N  F  R  F  K  F  L  G  E  K  K  K  K  G  T  F  *  F  L  F  R  K  L  K  L  L  L  V  W  A  I  G  P  S  *  N  F  E  Y  F  S  K  K  K  *  L  Y  L  L  N  M  I  Y  K  L  Y  L  F  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49563" stop="49658"/>
                    <exon start="50556" stop="50668"/>
                    <exon start="51378" stop="51600"/>
                    <exon start="52258" stop="52451"/>
                    <exon start="53432" stop="53837"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1029</number_coding_nucleotides>
                  <number_encoded_amino_acids>343</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMALFSSRNSSRSRSSLPYLVFLLIAAFFVFKVDILISQSFSSARRNLEKTPNRIVVNPQKSSEERVVDSLPVVLVNGTFDQHIMISWGDDRGKILENGELLTLSLDKKSGSGFQSKKEYLFAKIDMQIKLVPGNSAGTVTTFYLSSQGNKHDEIDFEFLGNSTGNPYTLHTNVFSLGKGNREQQFFLWFDPTADYHTYSILWNSKCIIFYVDDIPIREYKNPERLGLSYLKYQPMRLYSSLWNADDWATQGGRIKTNWELAPFVASYKNFTYEACIYSRLTSSSSCDIDSPTPINNAWLTYELDRTSRVRMKALQKKHMIYDYCNDKWRFPKGPAPECKLLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="59719" PGL_stop="61428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59719" e_stop="59853"/>
            <exon e_start="59954" e_stop="60147"/>
            <exon e_start="60872" e_stop="61428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.770" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.990" e_score="0.995"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59719" e_stop="59853" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.770" acc_prob="0.982">
            <gDNA_intron_boundary i_start="59854" i_stop="59953" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="59954" e_stop="60147" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.990">
            <gDNA_intron_boundary i_start="60148" i_stop="60871" i_length="724"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="60872" e_stop="61428" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59719" stop="59853"/>
              <exon start="59954" stop="60147"/>
              <exon start="60872" stop="61428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320001" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATACTTACTCTTACACTTGATAATATTTCAGGTTCTGGATTTCAATCAAAGAAGGAATATTTATTTGGGAAAATTGATATGCAAATAAAATTAGTTCAAGGGAACTCTGCTGGCACTGTCACCGCATACTAT : TTGTCATCACAAGGATCAAGTCATGATGAGATAGATTTTGAGTTTCTTGGTAATTTAAGTGGAGAGCCATATACACTACATACAAATGTGTATACACAAGGCAAAGGTGATAGAGAGCAACAATTTCACTTGTGGTTTGATCCTGCTAATGATTTTCATACTTATTCTATCCTTTGGAATCCACAAACTATTGT : ATTTTCAGTGGACAATGTACCAATAAGGGAGTTTAAAAATATGGAAAACATTGGAGTTGCATTTCCAAAATCTCAATCAATGAAACTTTATTCAAGTTTATGGAATGCTGATGAATGGGCCACAAGAGGTGGGCTTATCAAGACTGATTGGGCCCAAGCCCCATTTACAGCCTCTTATAGAAATTTCAATGCCAATATTTGCAATAATAATAATAATAATAATGATTCTTGCAAATATTTGGTAGAAAATTTGGATCCTGTGAATGAAGAAAAATTGAGAAGGGTGCAACAAAAATACATGATATATAATTATTGTACTGATAATAAGAGATTTCCTCAAGGTTTTCCTCTAGAGTGTAGTGTTAGTTAATTAATTAATTAAATTTAATTAATGTAGGTAGAAAAGTTGGTATAATAATATTAATAGCCTCCTCTAGTTTTGTCTCTTTCAAGTTTATTATATATTGTGGCCTAAGTGATAAGGGAGGACTACTATTGTAATATTTATATGTTTATGTTTTTAATAATGGAAGTTGAAAGTGTTTATGTACTTAAAA</gDNA_template>
            <first_frame> E  I  L  T  L  T  L  D  N  I  S  G  S  G  F  Q  S  K  K  E  Y  L  F  G  K  I  D  M  Q  I  K  L  V  Q  G  N  S  A  G  T  V  T  A  Y  Y  :  L  S  S  Q  G  S  S  H  D  E  I  D  F  E  F  L  G  N  L  S  G  E  P  Y  T  L  H  T  N  V  Y  T  Q  G  K  G  D  R  E  Q  Q  F  H  L  W  F  D  P  A  N  D  F  H  T  Y  S  I  L  W  N  P  Q  T  I  V :   F  S  V  D  N  V  P  I  R  E  F  K  N  M  E  N  I  G  V  A  F  P  K  S  Q  S  M  K  L  Y  S  S  L  W  N  A  D  E  W  A  T  R  G  G  L  I  K  T  D  W  A  Q  A  P  F  T  A  S  Y  R  N  F  N  A  N  I  C  N  N  N  N  N  N  N  D  S  C  K  Y  L  V  E  N  L  D  P  V  N  E  E  K  L  R  R  V  Q  Q  K  Y  M  I  Y  N  Y  C  T  D  N  K  R  F  P  Q  G  F  P  L  E  C  S  V  S  *  L  I  N  *  I  *  L  M  *  V  E  K  L  V  *  *  Y  *  *  P  P  L  V  L  S  L  S  S  L  L  Y  I  V  A  *  V  I  R  E  D  Y  Y  C  N  I  Y  M  F  M  F  L  I  M  E  V  E  S  V  Y  V  L  K  </first_frame>
            <second_frame>  K  Y  L  L  L  H  L  I  I  F  Q  V  L  D  F  N  Q  R  R  N  I  Y  L  G  K  L  I  C  K  *  N  *  F  K  G  T  L  L  A  L  S  P  H  T  I :   C  H  H  K  D  Q  V  M  M  R  *  I  L  S  F  L  V  I  *  V  E  S  H  I  H  Y  I  Q  M  C  I  H  K  A  K  V  I  E  S  N  N  F  T  C  G  L  I  L  L  M  I  F  I  L  I  L  S  F  G  I  H  K  L  L   : Y  F  Q  W  T  M  Y  Q  *  G  S  L  K  I  W  K  T  L  E  L  H  F  Q  N  L  N  Q  *  N  F  I  Q  V  Y  G  M  L  M  N  G  P  Q  E  V  G  L  S  R  L  I  G  P  K  P  H  L  Q  P  L  I  E  I  S  M  P  I  F  A  I  I  I  I  I  I  M  I  L  A  N  I  W  *  K  I  W  I  L  *  M  K  K  N  *  E  G  C  N  K  N  T  *  Y  I  I  I  V  L  I  I  R  D  F  L  K  V  F  L  *  S  V  V  L  V  N  *  L  I  K  F  N  *  C  R  *  K  S  W  Y  N  N  I  N  S  L  L  *  F  C  L  F  Q  V  Y  Y  I  L  W  P  K  *  *  G  R  T  T  I  V  I  F  I  C  L  C  F  *  *  W  K  L  K  V  F  M  Y  L  K </second_frame>
            <third_frame>   N  T  Y  S  Y  T  *  *  Y  F  R  F  W  I  S  I  K  E  G  I  F  I  W  E  N  *  Y  A  N  K  I  S  S  R  E  L  C  W  H  C  H  R  I  L   : F  V  I  T  R  I  K  S  *  *  D  R  F  *  V  S  W  *  F  K  W  R  A  I  Y  T  T  Y  K  C  V  Y  T  R  Q  R  *  *  R  A  T  I  S  L  V  V  *  S  C  *  *  F  S  Y  L  F  Y  P  L  E  S  T  N  Y  C  :  I  F  S  G  Q  C  T  N  K  G  V  *  K  Y  G  K  H  W  S  C  I  S  K  I  S  I  N  E  T  L  F  K  F  M  E  C  *  *  M  G  H  K  R  W  A  Y  Q  D  *  L  G  P  S  P  I  Y  S  L  L  *  K  F  Q  C  Q  Y  L  Q  *  *  *  *  *  *  *  F  L  Q  I  F  G  R  K  F  G  S  C  E  *  R  K  I  E  K  G  A  T  K  I  H  D  I  *  L  L  Y  *  *  *  E  I  S  S  R  F  S  S  R  V  *  C  *  L  I  N  *  L  N  L  I  N  V  G  R  K  V  G  I  I  I  L  I  A  S  S  S  F  V  S  F  K  F  I  I  Y  C  G  L  S  D  K  G  G  L  L  L  *  Y  L  Y  V  Y  V  F  N  N  G  S  *  K  C  L  C  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59719" stop="59853"/>
                    <exon start="59954" stop="60147"/>
                    <exon start="60872" stop="61241"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EILTLTLDNISGSGFQSKKEYLFGKIDMQIKLVQGNSAGTVTAYYLSSQGSSHDEIDFEFLGNLSGEPYTLHTNVYTQGKGDREQQFHLWFDPANDFHTYSILWNPQTIVFSVDNVPIREFKNMENIGVAFPKSQSMKLYSSLWNADEWATRGGLIKTDWAQAPFTASYRNFNANICNNNNNNNDSCKYLVENLDPVNEEKLRRVQQKYMIYNYCTDNKRFPQGFPLECSVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="63420" PGL_stop="66669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63420" e_stop="63595"/>
            <exon e_start="64403" e_stop="64541"/>
            <exon e_start="66268" e_stop="66669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.384" acc_prob="0.310" e_score="0.909"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="0.950"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="63420" e_stop="63595" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.384" acc_prob="0.310">
            <gDNA_intron_boundary i_start="63596" i_stop="64402" i_length="807"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="64403" e_stop="64541" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64542" i_stop="66267" i_length="1726"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="66268" e_stop="66669" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63420" stop="63595"/>
              <exon start="64403" stop="64541"/>
              <exon start="66268" stop="66669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328742" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTAAAATAACATAAAGATCATATGGATATTGTGAGAGTAGAGTTTTTGTTGAGGCTTTTGGCAATTTTGTTGTTGGTTTTGACTGCTTGTCTTGTTGGATTTGATTCTCAAACTAAAGTTGTTTTTTTAACTGTTCAAATAAAAGCAAACTTCAAATATTTGGGTGCATTGAG : TGTTTTGGTATGGATTGATGCTGCTGCTGCCATTTATAATGTACTTCAACTGCTGAGATGTTTTTTCATTGCTACTTCAAAGGTGGATATTAAACAAATTTCTCACAAGAATTATTGGTTCTTTTTCTTATTAGACCAG : GTAGTTGTGTACATTGTATTTGCAGCAAATTCAGCAGCAATTGAAGCATCAGCAATTGCATTAATTGGAATTAAAAGCTTACAATGGATGAAAATATGCAATAGATTTACTAGATTTTGTATCCAAATTGGAGCTGCTTTAATATTGGGCTATATTGCTGTTCTTATATTATTTCTAGTTTCATCAATTTCTGCTTTTCAATTATTTAGGTTATATTCACCTAAACATTTTCTTAAACTTAAAACAAAATTAATTGATGATTCTTATGTTGTTCATCAAAACGTGTTGCAGAACGATCTACAAAATAATTGATATCGATGTAGTTTGCTTCCTTAGTACATAAGTACTTTGTTATGTAAAAATAAATTTATGATGAATTAATTCGACTATGCTTTTATTTTT</gDNA_template>
            <first_frame> F  L  K  *  H  K  D  H  M  D  I  V  R  V  E  F  L  L  R  L  L  A  I  L  L  L  V  L  T  A  C  L  V  G  F  D  S  Q  T  K  V  V  F  L  T  V  Q  I  K  A  N  F  K  Y  L  G  A  L  S :   V  L  V  W  I  D  A  A  A  A  I  Y  N  V  L  Q  L  L  R  C  F  F  I  A  T  S  K  V  D  I  K  Q  I  S  H  K  N  Y  W  F  F  F  L  L  D  Q  :  V  V  V  Y  I  V  F  A  A  N  S  A  A  I  E  A  S  A  I  A  L  I  G  I  K  S  L  Q  W  M  K  I  C  N  R  F  T  R  F  C  I  Q  I  G  A  A  L  I  L  G  Y  I  A  V  L  I  L  F  L  V  S  S  I  S  A  F  Q  L  F  R  L  Y  S  P  K  H  F  L  K  L  K  T  K  L  I  D  D  S  Y  V  V  H  Q  N  V  L  Q  N  D  L  Q  N  N  *  Y  R  C  S  L  L  P  *  Y  I  S  T  L  L  C  K  N  K  F  M  M  N  *  F  D  Y  A  F  I  F </first_frame>
            <second_frame>  F  *  N  N  I  K  I  I  W  I  L  *  E  *  S  F  C  *  G  F  W  Q  F  C  C  W  F  *  L  L  V  L  L  D  L  I  L  K  L  K  L  F  F  *  L  F  K  *  K  Q  T  S  N  I  W  V  H  *   : V  F  W  Y  G  L  M  L  L  L  P  F  I  M  Y  F  N  C  *  D  V  F  S  L  L  L  Q  R  W  I  L  N  K  F  L  T  R  I  I  G  S  F  S  Y  *  T  R :   *  L  C  T  L  Y  L  Q  Q  I  Q  Q  Q  L  K  H  Q  Q  L  H  *  L  E  L  K  A  Y  N  G  *  K  Y  A  I  D  L  L  D  F  V  S  K  L  E  L  L  *  Y  W  A  I  L  L  F  L  Y  Y  F  *  F  H  Q  F  L  L  F  N  Y  L  G  Y  I  H  L  N  I  F  L  N  L  K  Q  N  *  L  M  I  L  M  L  F  I  K  T  C  C  R  T  I  Y  K  I  I  D  I  D  V  V  C  F  L  S  T  *  V  L  C  Y  V  K  I  N  L  *  *  I  N  S  T  M  L  L  F   </second_frame>
            <third_frame>   F  K  I  T  *  R  S  Y  G  Y  C  E  S  R  V  F  V  E  A  F  G  N  F  V  V  G  F  D  C  L  S  C  W  I  *  F  S  N  *  S  C  F  F  N  C  S  N  K  S  K  L  Q  I  F  G  C  I  E  :  C  F  G  M  D  *  C  C  C  C  H  L  *  C  T  S  T  A  E  M  F  F  H  C  Y  F  K  G  G  Y  *  T  N  F  S  Q  E  L  L  V  L  F  L  I  R  P   : G  S  C  V  H  C  I  C  S  K  F  S  S  N  *  S  I  S  N  C  I  N  W  N  *  K  L  T  M  D  E  N  M  Q  *  I  Y  *  I  L  Y  P  N  W  S  C  F  N  I  G  L  Y  C  C  S  Y  I  I  S  S  F  I  N  F  C  F  S  I  I  *  V  I  F  T  *  T  F  S  *  T  *  N  K  I  N  *  *  F  L  C  C  S  S  K  R  V  A  E  R  S  T  K  *  L  I  S  M  *  F  A  S  L  V  H  K  Y  F  V  M  *  K  *  I  Y  D  E  L  I  R  L  C  F  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0062O11.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63432" stop="63595"/>
                    <exon start="64403" stop="64541"/>
                    <exon start="66268" stop="66579"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKDHMDIVRVEFLLRLLAILLLVLTACLVGFDSQTKVVFLTVQIKANFKYLGALSVLVWIDAAAAIYNVLQLLRCFFIATSKVDIKQISHKNYWFFFLLDQVVVYIVFAANSAAIEASAIALIGIKSLQWMKICNRFTRFCIQIGAALILGYIAVLILFLVSSISAFQLFRLYSPKHFLKLKTKLIDDSYVVHQNVLQNDLQNN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 11648 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 1941 bytes was the average size of a spliced alignment
$ 11952 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1992 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 11 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 09:16:42
-->
