<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-13 23:50:34"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="-" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>agtatgtattaagcaatatcataaaattaactaatatccttagcatgcagcatttgcaattaccataacccttggttgcatcaccaagcacatcaatgaggactcacacctcctcatcatacttatttgggaatttagttcattggattgcatatattaacatatttcaagattcatcatatttattcccctcgtgtccttacgtgacactccactcctcaatatactatcctggcaccggaacgtggcacccgatccatattctatcctggtgtcagaacgtgacacccgatccatattctatcctggtgtcggaacgtgacacccgatccatattctatcctggtaccggaacgtggcacccgatccatattctatcctggtgtcggaacgtgacacccgatccatattctatcctggtaccggaacgtggcacccgatcccctaatctcaccactttcgttcatcaagccttcttttataccaaggcatcattattaacaaagtagattagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="+" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="29853" stop="38057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30153" g_stop="30387" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30388" i_stop="30576" i_length="189">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.770" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30577" g_stop="30649" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="308" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30650" i_stop="37549" i_length="6900">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37550" g_stop="37757" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="515" r_length="207" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="+" ref_id="SGN-E242359" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30153" e_stop="30387"/>
          <exon e_start="30577" e_stop="30649"/>
          <exon e_start="37550" e_stop="37757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGTATTAAGCAATATCATAAAATCAACTAATATCCTTAGCATGCGGCATTTACAGTTATCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTCATTTGGGAATTTAGTTCATTAGATTGGATATATTAACATATTTCAAGATTCATTATCTTTATTCCCCTCGTTTCTGTACGTCACACTCCGCTCCTCAATATACTATCCTGGTGTCGGAACGTGACACTCCAATCCTCATTCTATCCTGGTACCGAAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTTGGAACGTTACACTCGATCCATATTCTATCCTAGTACCGGAACGTGGCACCCGATCCACATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCAGAACGTGGCACCCGATCCCCTAACCTCACCACTTTCGTTCATCAAGCCTTCTTTTATACGAAGGCATCATCATTATAAAAGTAGATTAGGGTTTCTTTTCAAGATTTAGGATTCAATAGATTCATCATGCTTATTTATTCACAATTACATAATCACATCATTCATGCAAGAATACAATTAAGCATATAGAAGGTTTACAATACTACTAACACATATCATTCGCTATTAAGAGTTTACTACGAATAGCATGAAAACCATAACCTACCTCCACCGAAGAATTGCGATCAACAATCTATCTTCTCAAAATCCTTGCTATCCTCTTCGTTTCTCTCTCTCTCTACTCGTTCTCTTTCTTTTTCTGTCTCTCTTTGTTCATTTAATTTTTCTTATTCAAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAGGCAAGAATAGTCAAAAACGTCCCTTTAAACGTATCAAGAAATCCGACCCAGACTGGGATTGTGCAACCTGCGATGGCCCGTCGTGCCTGTGACGGTCCGTCCAGCAGGTCGTCGCAAGGGTCAGAGACTCAATTTCCACTGAATAATCTGTGACGGTCCGTCACGCCTGTGATGGTCCGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCTAATTTCAGATTTCCTAAGTGTTTTGAAAAGAGACCCTGCGACGGCCCGTCATGCCCATGACGGTCCGTCGTTGGGTTCGTCGCTTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGTTCAAAACGACTAAACAGGTCGTTACAATAGATACCAATTTACCCATCGTTCGTCCCCGAGCGATCACAAGAAGGAAAACAAGGGCGAAAAGGAGTACCTGTATCCGTAAACAGATGTGGGTATTTTTCTCGCATATCCGCCTCCTTCTCCCAAGTGGCTTCTTCAACGGGTCGATTCTTCCATTACACCTTGATGGATGCAATCTCTCTTGACCTCAACTTGCGAACTTCTCGATCTAAAATAGAAACTGAATCCCAACGGATAATGTAGTTTCCATCCCCATGGTATCTTTTCAACATTGACACATGGAATACCGAATGTACTCCGGACAGCCCTGGAGGCAAGGCTAACTCATAAGCCACCTCTCCTACTCGCTTAAGTACTTCAAATGGTCCAATGTACCTTGGACTTAGTTTACCACTTTTACCAAACCGCATCACCCCTTTCATTGGTGAAACTTTCAACAAGACTTGTTCACCCTCCATGAACTCTAAGTCTCTAACCTTTCGATCTGCATATTCTTTTTGTCTACTTTGCACCGCTAGAAGCTTTTCTTGAATAGACTTCACTTTCTCTATCGAATCCCTCAAAAGGTCAGTACCCCAAGGCCTAACCTCTAATGCATCGAACCAACCAATGGGAGACCTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCTGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCGGTCTGAGGATGGAACGTTGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGTGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCAATCGCACCACTTCCGAGATGTAAAGTTTAGCTAACTTCTCGGCATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAACCTATCAACAATTACCCAAATAGAAATAAACTTTCCCAATGTCTTGGGAAGACCAACCACAAAGTCCATTGCAATTCTCTCCAACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTCTTGTGTTCATACTTTACTTGTTGACAGTTTTGACACTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGATACATCTTGGTTGCACCCGGATGTAAAAAATACCTTGAACTATGAGCCTCTATAAGAATAGTGTTGATCAAATCATCGACGCGGGGTACGCATACCCTTCCCTTATTCCTCAAAATACCTTCCTCATCAATTTGTGCTTCCTTAGCCTCTCCTCGCAATACCTTATCTTGAATTCTGCGCAGTTTCTCATCATCACACTGTCTTTCCTTAATCCTTTCAAGAAGGGAAGATCTTGCCTCCACAGAAGCCAACAATCCTCCCTTCTCGTTTACTTCTAATCTCATCAAGTCATTAGCTAGAATCTGAACCTCTCTAGCCAATGGGCATCTAGAAGCTTGCAAGTGAGCTAGACTTCCCATGCTTCCCGCCTTTCTACTTAAAGCATCCGCTACAACATTCGCTTTTCCCGGATGATACAAGATAGTGATATCGTAGTCTTTTAGTAGCTCCATCCATCTCCGCTGCCTCAAGTTCAAATCCTTCTGAGTAAAGACATACTGAAGGCTACGATGATCCATGTGGACCACACACTTAACCCCATATAAATAGTGTCTCCATTGCTTTAATGCAAACACTACCGCAGCCAATTCCAAATCATGAGTTGGATAGTTACGTTCATGCACTTTTAATTGTCTTGAAGCATAAGCAATCACATTCTTCTCTTGCATTAGCACTGCACCCAAACCCGAATAGGATGCATCACAATAAATAATGAATTTCTTACCCTCTACTGGCAAGGTAAGGATAGGTGCGGTAGTCAACAAAGTCATGAGCTTCTGAAAGCTTTCCTCACATTCATCCGACCATACAAATGGAACATTCTGCTTAGTGAAGTTCGTCAATTGGGAAGCAATAGAAGAGAATCCCTTGACAAATCGACGGTGGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCACCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAAGAGAACTTGGCATAATGCTTTTTCTCCCTCAACATTTTCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATATGATCATGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGACAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTATTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCAGTTCAAGATTGATACAGAAGTCAATATCCCTACCGGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAATCTCACGGACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGAACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGAATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCAAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGATACAAGACAAGACCTATACACCCTTTAAACTATGACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAACAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAATCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCTGCTTCAGACCGCCAAGGGAAAGCGTAGCAATGGGCCCTCTCACTCGTTTGTCCGTTGCCCCTTTCATGTTGTGATTTAGTGGCTCCAGGTTGCCCATCACCTCGGCCGTTCTGGTCACCACCATTACCTCGACCACTACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGCGCAACCTCCGGAACCTTGTCCTATAGAGTAAGAACCATTAAACTCACCTCCCTTTCAAAACCTTTTTGATGTCGATATCGGGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGTCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAACTCTGACCTCAACCCCTACACAAACCGGCGAATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGTATACCTGGATAATGCACGAAGCATAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTTGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACAAGAAAATCGTAAGCATCCTCACATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTAACGAACATACTGAAAAGTTCATGCTGATCATTTGTTATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCAAATGGAACATCCATGAGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTTTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCACCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATAAGATGGGCTAGGCACTCGTCCTCTTCCCCTAAAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTTCTCGAGCCACAGCCCCAGTGGCTGGCTCAGTCTTTTCTTGTCTGGCCGGTGTTGGTGTTGGCGTAGTCGTTGCTCTAGTTCTAACCATCTGCGAAAGAGAGTGAAGATGGTCAGATACCAATTCGTATCGCCTAGATACTAATTGGACTCAAGTAGTAGCACGAAAGAAAGAATGAAAGAGTGAAGTTTTCCTAAAGTCTTATAGTCTCTCAAGGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCCACTAGACCTATTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACAAAGTTTGTCACGACCGAAATCTGGACCGCGACTGGACCCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAAGGTAGTATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATAAAATCAATAACTATTATTATTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATAATCAAATTACTAAACTAAGAGTATTCTAAGAAGCTAAAAATACATACGCAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGTAGTAAGACTGGCTTGAGTTACTGTTGAGTCGAAGATGACGACACGTTCGCTGCACTCCACAAATAAACAAGAAGAAAACAATAAAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATGTATTAAGCAATATCATAAAATCAACTAATATCCTTAGCATGCAGCATTTACAGTTACCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTCATTTGGGAATTTAGTTCATTAGATTGGATATATAAACATATTTCAAGATTTATTATCTTTATTCCCCTCGTGTCGGTACGTGACACTCCGCTCCTCAATATACTCTCCGGGTGTCGGAACGTGACACTCCGATCCTCATTCTATCCTGGTACCGGAACGTGGCACCTGATCCATATTCTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCTTGGTACCGGAACGTGGCACCCGATCCATATTCTATCTTGGTGTCTGAAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACCACTTTCGTTCATCAACCCTTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGG</genome_strand>
        <mrna_strand>AGTATGTATTAAGCAATATCATAAAATTAACTAATATCCTTAGCATGCAGCATTTGCAATTACCATAACCCTTGGTTGCATCACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTTATTTGGGAATTTAGTTCATTGGATTGCATATATTAACATATTTCAAGATTCATCATATTTATTCCCCTCGTGTCCTTACGTGACACTCCACTCCTCAATATACTATCCTGG.............................................................................................................................................................................................CACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCAGAACGTGACACCCGATCCATATTCTATCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTC-GGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACCACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATTATTAACAAAGTAGATTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="+" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="31878" stop="32655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32178" g_stop="32354" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32178" e_stop="32354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCTGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="+" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="33359" stop="34672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33659" g_stop="34372" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33659" e_stop="34372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTGGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCACCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAAGAGAACTTGGCATAATGCTTTTTCTCCCTCAACATTTTCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATATGATCATGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGACAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTATTCAATAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTT-AGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="+" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="33359" stop="34555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33659" g_stop="34255" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33659" e_stop="34255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTGGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCACCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAAGAGAACTTGGCATAATGCTTTTTCTCCCTCAACATTTTCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATATGATCATGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGACAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTT-AGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="+" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="33359" stop="34485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33659" g_stop="34185" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33659" e_stop="34185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTGGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCACCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAAGAGAACTTGGCATAATGCTTTTTCTCCCTCAACATTTTCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATATGATCATGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGACAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTT-AGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="+" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="33430" stop="34710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33730" g_stop="34410" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33730" e_stop="34410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCACCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAAGAGAACTTGGCATAATGCTTTTTCTCCCTCAACATTTTCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATATGATCATGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGACAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTATTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTG</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTT-AGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="+" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="33430" stop="34389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33730" g_stop="34089" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33730" e_stop="34089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCACCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAAGAGAACTTGGCATAATGCTTTTTCTCCCTCAACATTTTCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATATGATCATGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTT-AGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="+" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="33880" stop="35100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34180" g_stop="34838" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34180" e_stop="34838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTATTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCAGTTCAAGATTGATACAGAAGTCAATATCCCTACCGGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAATCTCACGGACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGAACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGAATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCAAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCAC-AAAAGATACAAGACAAGACCTATACACCCTTTAAACTATGAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAAC-AGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="-" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="35976" stop="33968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35676" g_stop="35504" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35503" i_stop="34760" i_length="744">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34759" g_stop="34232" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35676" e_stop="35504"/>
          <exon e_start="34759" e_stop="34232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTATGCTTCGTGCATTATCCAGGTATACCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGTAGGGGTTGAGGTCAGAGTTGCGGATTTCGGCCTTACAGATAGCGGCAACGACAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCCCGATATCGACATCAAAAAGGTTTTGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTATAGGACAAGGTTCCGGAGGTTGCGCAGTTCGACCCATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTCATGGCAGAGGCCGTTATTCTGGAGGACGTAGTGGTCGAGGTAATGGTGGTGACCAGAACGGCCGAGGTGATGGGCAACCTGGAGCCACTAAATCACAACATGAAAGGGGCAACGGACAAACGAGTGAGAGGGCCCATTGCTACGCTTTCCCTTGGCGGTCTGAAGCAGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGATTTGTGATTGCATGGCTTCTGTATTATTTGATCCCGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTTAATTTACATTGTGAATTGTTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTCATAGTTTAAAGGGTGTATAGGTCTTGTCTTGTATCTTTTGTGGGGAGCAATACTTATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTTGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGATTCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTTCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTAGTCCGTGAGATTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCCGGTAGGGATATTGACTTCTGTATCAATCTTGAACTGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAATAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="+" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="33949" stop="35310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34249" g_stop="35010" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34249" e_stop="35010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTATTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCAGTTCAAGATTGATACAGAAGTCAATATCCCTACCGGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAATCTCACGGACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGAACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGAATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCAAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGATACAAGACAAGACCTATACACCCTTTAAACTATGACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAACAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCGGGATCAAATAATACAGAAGCCATGCAATCACAAATCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="+" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="33949" stop="35209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34249" g_stop="34909" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34249" e_stop="34909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTATTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCAGTTCAAGATTGATACAGAAGTCAATATCCCTACCGGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAATCTCACGGACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGAACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGAATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCAAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGATACAAGACAAGACCTATACACCCTTTAAACTATGACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAACAATTCACAATGTAAATTAAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="+" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="34353" stop="35278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34652" g_stop="34982" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34652" e_stop="34982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCAAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGATACAAGACAAGACCTATACACCCTTTAAACTATGACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAACAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAATCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="+" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="34559" stop="35717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34859" g_stop="35417" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34859" e_stop="35417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGTATGTCAAACAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAATCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCTGCTTCAGACCGCCAAGGGAAAGCGTAGCAATGGGCCCTCTCACTCGTTTGTCCGTTGCCCCTTTCATGTTGTGATTTAGTGGCTCCAGGTTGCCCATCACCTCGGCCGTTCTGGTCACCACCATTACCTCGACCACTACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGCGCAACCTCCGGAACCTTGTCCTATAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="+" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="35280" stop="36599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35580" g_stop="36299" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35580" e_stop="36299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGTATACCTGGATAATGCACGAAGCATAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTTGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACAAGAAAATCGTAAGCATCCTCACATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTAACGAACATACTGAAAAGTTCATGCTGATCATTTGTTATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCAAATGGAACATCCATGAGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTTTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCACCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATAAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="+" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="35283" stop="36546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35583" g_stop="36246" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35583" e_stop="36246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGTATACCTGGATAATGCACGAAGCATAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTTGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACAAGAAAATCGTAAGCATCCTCACATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTAACGAACATACTGAAAAGTTCATGCTGATCATTTGTTATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCAAATGGAACATCCATGAGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTTTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCA-ATCCCTCATTCTGCACTTGTTCAGTTTCACCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="-" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="36602" stop="35450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36303" g_stop="35750" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36303" e_stop="35750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTAGCCCATCTTATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGTGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAAACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCTCATGGATGTTCCATTTGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATAACAAATGATCAGCATGAACTTTTCAGTATGTTCGTTAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATGTGAGGATGCTTACGATTTTCTTGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACAAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="+" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="35638" stop="36668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35938" g_stop="36370" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35938" e_stop="36370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTAACGAACATACTGAAAAGTTCATGCTGATCATTTGTTATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCAAATGGAACATCCATGAGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTTTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCACCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATAAGATGGGCTAGGCACTCGTCCTCTTCCCCTAAAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTT</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="-" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="36962" stop="36077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36662" g_stop="36377" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36662" e_stop="36377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAATAGGTCTAGTGGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGACTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTAGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCGGCCAGACAAGAAAAGACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0082D04-OWlfs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0082D04.1" temp_strand="-" temp_description="C07HBa0082D04.1  CU024881.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0082D04 sequenced_by:sanger upload_account_name:uk">
        <position start="37608" stop="36772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37308" g_stop="37072" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0082D04.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0082D04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37308" e_stop="37072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTG-TTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="30153" PGL_stop="37757"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33659" e_stop="35417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="33659" e_stop="35417" e_length="1759"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33659" stop="34372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33659" stop="34255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33659" stop="34185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33730" stop="34410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33730" stop="34089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34180" stop="34838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34249" stop="35010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34249" stop="34909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34652" stop="34982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34859" stop="35417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTGGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCACCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAAGAGAACTTGGCATAATGCTTTTTCTCCCTCAACATTTTCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATATGATCATGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGACAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTATTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCAGTTCAAGATTGATACAGAAGTCAATATCCCTACCGGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAATCTCACGGACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGAACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGAATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCAAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGATACAAGACAAGACCTATACACCCTTTAAACTATGACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAACAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAATCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCTGCTTCAGACCGCCAAGGGAAAGCGTAGCAATGGGCCCTCTCACTCGTTTGTCCGTTGCCCCTTTCATGTTGTGATTTAGTGGCTCCAGGTTGCCCATCACCTCGGCCGTTCTGGTCACCACCATTACCTCGACCACTACGTCCTCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAACATTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGCGCAACCTCCGGAACCTTGTCCTATAGAGTAAGAACCATTAAACTCACC</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  T  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  K  R  T  W  H  N  A  F  S  P  S  T  F  S  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  *  S  *  R  D  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  V  G  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  G  M  H  L  V  *  *  S  L  Y  S  I  T  L  E  V  V  P  L  T  L  L  T  L  R  E  P  F  Y  K  G  V  *  K  W  G  V  C  P  V  Q  D  *  Y  R  S  Q  Y  P  Y  R  V  A  Y  Q  E  D  L  Q  G  T  H  P  K  S  H  G  L  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  N  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  N  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  Q  E  L  H  Q  N  Q  P  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  I  Q  D  K  T  Y  T  P  F  K  L  *  Q  T  H  P  P  E  *  K  H  E  *  V  C  Q  T  I  H  N  V  N  *  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  R  D  Q  I  I  Q  K  P  C  N  H  K  S  E  D  Y  L  *  *  Q  H  Q  M  P  L  L  Q  T  A  K  G  K  R  S  N  G  P  S  H  S  F  V  R  C  P  F  H  V  V  I  *  W  L  Q  V  A  H  H  L  G  R  S  G  H  H  H  Y  L  D  H  Y  V  L  Q  N  N  G  L  C  H  D  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  I  S  *  Y  V  Q  S  P  H  I  H  S  T  L  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  R  N  L  R  N  L  V  L  *  S  K  N  H  *  T  H  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  W  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  P  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  R  E  L  G  I  M  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  T  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  S  V  V  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  G  C  T  W  S  N  E  A  F  I  Q  *  L  L  K  L  C  L  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  C  A  Q  F  K  I  D  T  E  V  N  I  P  T  G  W  H  T  R  K  I  C  R  E  H  I  Q  N  L  T  D  Y  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  R  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  H  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  K  N  Y  I  K  I  N  H  F  *  D  N  Q  V  Y  I  S  I  A  P  H  K  R  Y  K  T  R  P  I  H  P  L  N  Y  D  R  L  T  H  R  S  R  N  T  N  R  Y  V  K  Q  F  T  M  *  I  K  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  G  I  K  *  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  C  F  R  P  P  R  E  S  V  A  M  G  P  L  T  R  L  S  V  A  P  F  M  L  *  F  S  G  S  R  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  A  M  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  S  L  N  M  S  N  L  P  T  S  I  A  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  R  R  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  N  C  A  T  S  G  T  L  S  Y  R  V  R  T  I  K  L  T </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  G  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  E  N  L  A  *  C  F  F  S  L  N  I  F  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  M  I  M  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  Q  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  S  S  R  L  I  Q  K  S  I  S  L  P  G  G  I  P  G  R  S  A  G  N  T  S  K  I  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  E  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  E  S  V  P  G  L  A  N  V  T  I  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  D  T  R  Q  D  L  Y  T  L  *  T  M  T  D  S  P  T  G  V  E  T  R  I  G  M  S  N  N  S  Q  C  K  L  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  I  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  Q  G  K  A  *  Q  W  A  L  S  L  V  C  P  L  P  L  S  C  C  D  L  V  A  P  G  C  P  S  P  R  P  F  W  S  P  P  L  P  R  P  L  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  Q  Y  L  L  I  C  P  I  S  P  H  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G  G  G  P  P  T  T  V  C  S  E  D  *  M  G  R  T  A  Q  P  P  E  P  C  P  I  E  *  E  P  L  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0082D04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35091" stop="35345"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSGSRLPITSAVLVTTITSTTTSSRITASAMTTSTSNIWRSVTLFWTISLNMSNLPTSIALSGFMHRSLREVLTGRRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0082D04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34387" stop="34632"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPSSRLIQKSISLPGGIPGRSAGNTSKISRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLERRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0082D04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33924" stop="34163"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEIQIWLKNPVHQAHERSRGIRKTKRHHYKFVMPIPRSKSSLWHIRCPYFQLMTTGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0082D04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33687" stop="33923"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LANPTKLLISDTLVGLTQFFTVSILEGSTITPPLETTCPKKDTASSQNSHLRELGIMLFLPQHFQYHSQMLFMFLLAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0082D04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34365" stop="34565"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCGSHSIRGYRNGACAQFKIDTEVNIPTGWHTRKICREHIQNLTDYRNRLNRRYLGSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0082D04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33856" stop="34053"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFFSLNIFNTILKCSSCSFLLFEYTNISSINMIMKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35580" e_stop="36370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="35580" e_stop="36370" e_length="791"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35580" stop="36299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35583" stop="36246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35938" stop="36370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAATTCGCTCTTGTGGACTGAAACACAGTTGGGTGGTATACCTGGATAATGCACGAAGCATAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTTGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACAAGAAAATCGTAAGCATCCTCACATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTAACGAACATACTGAAAAGTTCATGCTGATCATTTGTTATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCAAATGGAACATCCATGAGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTTTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCACCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATAAGATGGGCTAGGCACTCGTCCTCTTCCCCTAAAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTT</gDNA_template>
            <first_frame> A  N  S  L  L  W  T  E  T  Q  L  G  G  I  P  G  *  C  T  K  H  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  L  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  K  K  I  V  S  I  L  T  F  R  T  L  E  D  W  R  F  Q  F  N  E  H  T  E  K  F  M  L  I  I  C  Y  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  K  W  N  I  H  E  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  S  F  T  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  H  S  S  S  S  P  K  G  R  P  P  T  T  S  T  T  A  P  C  R  C  S   </first_frame>
            <second_frame>  R  I  R  S  C  G  L  K  H  S  W  V  V  Y  L  D  N  A  R  S  I  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  C  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  H  S  A  P  L  K  T  G  G  F  N  L  T  N  I  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  *  D  G  L  G  T  R  P  L  P  L  K  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </second_frame>
            <third_frame>   E  F  A  L  V  D  *  N  T  V  G  W  Y  T  W  I  M  H  E  A  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  F  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  Q  E  N  R  K  H  P  H  I  P  H  P  *  R  L  E  V  S  I  *  R  T  Y  *  K  V  H  A  D  H  L  L  L  *  A  Q  *  S  D  V  E  T  C  L  F  Q  M  E  H  P  *  G  E  P  *  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  G  V  F  G  P  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  Q  F  H  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  K  M  G  *  A  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  L  P  L  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0082D04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35892" stop="36146"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNKKIVSILTFRTLEDWRFQFNEHTEKFMLIICYYRPSSQTWKRAYFKWNIHEGSHSSRMLYLRSLRCWCRKHWGCLALIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0082D04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36147" stop="36368"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWQSLILHLFSFTILPFSYYFLSRWRSHCPSIRWARHSSSSPKGRPPTTSTTAPCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0082D04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35581" stop="35790"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIRSCGLKHSWVVYLDNARSIASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGASVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="32178" e_stop="32354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="32178" e_stop="32354" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32178" stop="32354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCTGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  L  L  R  V  G  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  L  P  T  L  E  S  F  S  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  C  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  F  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0082D04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="30153" e_stop="30387"/>
            <exon e_start="30577" e_stop="30649"/>
            <exon e_start="37550" e_stop="37757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.770" e_score="0.928"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.959"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="30153" e_stop="30387" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.770">
            <gDNA_intron_boundary i_start="30388" i_stop="30576" i_length="189"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="30577" e_stop="30649" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30650" i_stop="37549" i_length="6900"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="37550" e_stop="37757" e_length="208"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30153" stop="30387"/>
              <exon start="30577" stop="30649"/>
              <exon start="37550" stop="37757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTATGTATTAAGCAATATCATAAAATCAACTAATATCCTTAGCATGCGGCATTTACAGTTATCATAACCCTTGGTTACAACACCAAGCACATCAATGAGGACTCACACCTCCTCATCATACTCATTTGGGAATTTAGTTCATTAGATTGGATATATTAACATATTTCAAGATTCATTATCTTTATTCCCCTCGTTTCTGTACGTCACACTCCGCTCCTCAATATACTATCCTGG : TACCGGAACGTGGCACCCGATCCACATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTG : GTGTCGGAACGTGACACCCGATCCATATTCTATCTTGGTACCGGAACGTGGCACCCGATCCATATTCTATCTTGGTGTCTGAAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACCACTTTCGTTCATCAACCCTTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGG</gDNA_template>
            <first_frame> S  M  Y  *  A  I  S  *  N  Q  L  I  S  L  A  C  G  I  Y  S  Y  H  N  P  W  L  Q  H  Q  A  H  Q  *  G  L  T  P  P  H  H  T  H  L  G  I  *  F  I  R  L  D  I  L  T  Y  F  K  I  H  Y  L  Y  S  P  R  F  C  T  S  H  S  A  P  Q  Y  T  I  L   : V  P  E  R  G  T  R  S  T  F  Y  P  G  V  G  T  *  H  P  I  H  I  L  S  W :   C  R  N  V  T  P  D  P  Y  S  I  L  V  P  E  R  G  T  R  S  I  F  Y  L  G  V  *  N  V  T  P  D  P  Y  S  I  L  V  P  E  R  G  T  R  S  P  N  L  T  T  F  V  H  Q  P  F  F  Y  T  K  A  S  S  L  T  K  *  I  R </first_frame>
            <second_frame>  V  C  I  K  Q  Y  H  K  I  N  *  Y  P  *  H  A  A  F  T  V  I  I  T  L  G  Y  N  T  K  H  I  N  E  D  S  H  L  L  I  I  L  I  W  E  F  S  S  L  D  W  I  Y  *  H  I  S  R  F  I  I  F  I  P  L  V  S  V  R  H  T  P  L  L  N  I  L  S  W  :  Y  R  N  V  A  P  D  P  H  S  I  L  V  S  E  R  D  T  R  S  I  F  Y  P   : G  V  G  T  *  H  P  I  H  I  L  S  W  Y  R  N  V  A  P  D  P  Y  S  I  L  V  S  E  T  *  H  P  I  H  I  L  S  W  Y  R  N  V  A  P  D  P  L  I  S  P  L  S  F  I  N  P  S  F  I  P  R  H  H  H  *  Q  S  R  L   </second_frame>
            <third_frame>   Y  V  L  S  N  I  I  K  S  T  N  I  L  S  M  R  H  L  Q  L  S  *  P  L  V  T  T  P  S  T  S  M  R  T  H  T  S  S  S  Y  S  F  G  N  L  V  H  *  I  G  Y  I  N  I  F  Q  D  S  L  S  L  F  P  S  F  L  Y  V  T  L  R  S  S  I  Y  Y  P  G :   T  G  T  W  H  P  I  H  I  L  S  W  C  R  N  V  T  P  D  P  Y  S  I  L  :  V  S  E  R  D  T  R  S  I  F  Y  L  G  T  G  T  W  H  P  I  H  I  L  S  W  C  L  K  R  D  T  R  S  I  F  Y  P  G  T  G  T  W  H  P  I  P  *  S  H  H  F  R  S  S  T  L  L  L  Y  Q  G  I  I  I  N  K  V  D  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0082D04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30299" stop="30387"/>
                    <exon start="30577" stop="30649"/>
                    <exon start="37550" stop="37690"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGYINIFQDSLSLFPSFLYVTLRSSIYYPGTGTWHPIHILSWCRNVTPDPYSILVSERDTRSIFYLGTGTWHPIHILSWCLKRDTRSIFYPGTGTWHPIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="35676" PGL_stop="34232"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35676" e_stop="35504"/>
            <exon e_start="34759" e_stop="34232"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.884"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.884">
            <gDNA_exon_boundary e_start="35676" e_stop="35504" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35503" i_stop="34760" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="34759" e_stop="34232" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35676" stop="35504"/>
              <exon start="34759" stop="34232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTATGCTTCGTGCATTATCCAGGTATACCACCCAACTGTGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGTAGGGGTTGAGGTCAGAGTTGCGGATTTCGGCCTTACAGATAGCGGCAACGACAAAATCCTTCCAAG : AAATGGTTGATTTTGATGTAATTCTTGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGATTCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTTCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTAGTCCGTGAGATTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCCGGTAGGGATATTGACTTCTGTATCAATCTTGAACTGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAATAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  Y  A  S  C  I  I  Q  V  Y  H  P  T  V  F  Q  S  T  R  A  N  S  P  V  C  V  G  V  E  V  R  V  A  D  F  G  L  T  D  S  G  N  D  K  I  L  P  R :   N  G  *  F  *  C  N  S  W  Y  D  L  A  F  S  A  I  C  N  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  F  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  F  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  S  P  *  D  F  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  Q  S  *  T  G  H  T  P  H  F  Y  T  P  L  *  N  G  S  R  R  V  K  R  V  K  G  T  T  S  R  V  I  E  *  R  L  H  *  T  K  C  I  P  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  M  L  R  A  L  S  R  Y  T  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  *  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  T  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  M  V  T  L  A  K  P  G  T  D  S  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  S  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  I  L  D  V  F  P  A  D  L  P  G  M  P  P  G  R  D  I  D  F  C  I  N  L  E  L  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  C  F  V  H  Y  P  G  I  P  P  N  C  V  S  V  H  K  S  E  F  A  G  L  C  R  G  *  G  Q  S  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  :  K  W  L  I  L  M  *  F  L  V  *  L  G  F  L  R  N  L  Q  S  W  I  V  M  L  K  W  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  *  S  V  R  F  W  M  C  S  L  Q  I  F  L  V  C  H  P  V  G  I  L  T  S  V  S  I  L  N  W  A  H  A  P  F  L  Y  P  L  I  E  W  L  P  Q  S  *  E  S  *  R  H  N  F  K  S  Y  *  I  K  A  S  L  D  Q  V  H  P  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0082D04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35567" stop="35504"/>
                    <exon start="34759" stop="34233"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLRSELRISALQIAATTKSFQEMVDFDVILGMTWLSPQFAILDCNAKMVTLAKPGTDSLVWEGDYTSNPVRIISFLRSKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREILDVFPADLPGMPPGRDIDFCINLELGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="36303" PGL_stop="35750"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36303" e_stop="35750"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="36303" e_stop="35750" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36303" stop="35750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTAGCCCATCTTATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGTGAAACTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAAACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCTCATGGATGTTCCATTTGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATAACAAATGATCAGCATGAACTTTTCAGTATGTTCGTTAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATGTGAGGATGCTTACGATTTTCTTGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACAAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> A  *  P  I  L  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  *  N  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  G  P  N  T  P  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  *  N  R  H  V  S  T  S  D  Y  W  A  Y  N  N  K  *  S  A  *  T  F  Q  Y  V  R  *  I  E  T  S  S  L  Q  G  C  G  M  *  G  C  L  R  F  S  C  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  Y  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  L  M  D  V  P  F  E  I  G  T  F  P  R  L  T  T  G  P  I  I  T  N  D  Q  H  E  L  F  S  M  F  V  K  L  K  P  P  V  F  K  G  A  E  C  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  Q  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  V  K  L  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  A  K  H  P  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  S  W  M  F  H  L  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  C  S  L  N  *  N  L  Q  S  S  R  V  R  N  V  R  M  L  T  I  F  L  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  K  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0082D04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36302" stop="35751"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSYTRAVTPPPTEEVIREGEDGETEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATMAPLMDVPFEIGTFPRLTTGPIITNDQHELFSMFVKLKPPVFKGAECEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHIECQQTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="36662" PGL_stop="36377"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36662" e_stop="36377"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="36662" e_stop="36377" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36662" stop="36377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAATAGGTCTAGTGGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGACTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTAGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCGGCCAGACAAGAAAAGACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  G  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  T  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  R  Q  E  K  T  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  I  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  D  Y  K  T  L  G  K  L  H  S  F  I  L  S  F  V  L  L  L  E  S  N  *  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  R  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  *  V  *  W  S  L  K  E  R  *  G  D  A  F  T  F  P  *  E  T  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  S  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  G  Q  T  R  K  D  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0082D04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="37308" PGL_stop="37072"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37308" e_stop="37072"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="37308" e_stop="37072" e_length="237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37308" stop="37072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTTATTTGTG</gDNA_template>
            <first_frame> *  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  T  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  L  F  S  S  C  L  F  V </first_frame>
            <second_frame>  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  H  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  C  F  L  L  V  Y  L   </second_frame>
            <third_frame>   M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  I  V  F  F  L  F  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0082D04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 241 chains have been computed
$ 
$ memory statistics:
$ 42824 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 2253 bytes was the average size of a spliced alignment
$ 10656 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2131 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 266 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-13 23:54:07
-->
